LOCUS       DATIQC010000001         3186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_530003, whole genome shotgun sequence.
ACCESSION   DATIQC010000001 DATIQC010000000
VERSION     DATIQC010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3186
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530003"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..852
                     /locus_tag="VLM17_00005"
     CDS             <1..852
                     /locus_tag="VLM17_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HSR63978.1"
                     /translation="GTDDGAIVRRALAWIHRDFGYTLAMPMLGRDAVDEFLFVQKAGY
                     CEHFSSSFVVLMRAAGIPARVVTGYVGGYRNPIGDYWAVRRSDAHAWAEVWLAGRGWV
                     RVDPTAAVAPERIYDTLADRAPGAGGLFGTSLTPAYEFGDWLRRGWNDFLLGYDATRQ
                     RQLLQALGMADTDTGRLLAFFVAIAVLAIGWMVWLTARAERERDPVLRAFRRLAARYA
                     RLGLARAPHEPASTWAARVGAVRPAEAPALHGLIGRFDNWRYAGATGPHAARALARAL
                     RRHRPQS"
     gene            866..1351
                     /locus_tag="VLM17_00010"
     CDS             866..1351
                     /locus_tag="VLM17_00010"
                     /inference="COORDINATES: protein motif:HMM:NF015782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein"
                     /protein_id="HSR63979.1"
                     /translation="MNARLASLSLLAALLAACATQPTPLQGQYSPITPRDATDRDSTG
                     TMVRWGGRIVQVEPQENRTCFEMLSTGLDGSGRPYWQTDNVGGRFIACRTGFYDPALF
                     EKNREVTFTGKVSGYDLRKVGGYDYRFPHVEADVVYLWPVRQRVDVITRPAPWPWWGW
                     W"
     gene            complement(1471..1824)
                     /locus_tag="VLM17_00015"
     CDS             complement(1471..1824)
                     /locus_tag="VLM17_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HSR63980.1"
                     /translation="MSSDTIFHKIIRREIPADIVYEDDELVAFRDIAPQAPVHVLFVP
                     KVDFATLNDVPMAQAGVVGRLAVAAAEYARREGFADTGYRIVMNCNAEAGQTVFQIHL
                     HLLAGAPLGRFGTPR"
     gene            complement(1835..2431)
                     /gene="recR"
                     /locus_tag="VLM17_00020"
     CDS             complement(1835..2431)
                     /gene="recR"
                     /locus_tag="VLM17_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HSR63981.1"
                     /translation="MSALLEQLIEALRVLPGVGRKSAQRMAYHVLERERAGGERLAEA
                     LAAAVERIGHCARCRDFSETEVCATCASGSRDAHLLCVVESPADRLAIEQATGYRGLY
                     FVLQGRLSPLDGIGPRELGLDRLGARLAEGEVQELIIATNPTVEGEATAHYLAQLARQ
                     RGVRPSRLAHGVPLGGELEYVDRGTLSHAFGTRSEMPQ"
     gene            complement(2568..2888)
                     /locus_tag="VLM17_00025"
     CDS             complement(2568..2888)
                     /locus_tag="VLM17_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HSR63982.1"
                     /translation="MKGNIAQLMQQAQRMQENMQRAQEELAKAEVTGSAGGGMVSVTI
                     SGRMECRKVRIDPSVLSDPEMAEDLVAAAFNDAVNKANAMSQEKLGAATAGMPMPPGM
                     KFPF"
     gene            complement(2895..>3186)
                     /locus_tag="VLM17_00030"
     CDS             complement(2895..>3186)
                     /locus_tag="VLM17_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HSR63983.1"
                     /translation="ALLRLSLTHADDHLQSPALAKALADALAPALGATPQIRFETVTA
                     RAGETLHQRSARERDARQDAAEAAFLADPGIQQLMSRHGATLVPDSIRPFEE"
BASE COUNT          420 a         1156 c         1122 g          488 t
ORIGIN      
        1 ggcacggacg atggcgcgat cgtgcgacgc gcgctcgcct ggatccaccg cgacttcggc
       61 tacacgctgg cgatgccgat gctcggccgc gacgcggtcg acgagttcct gttcgtgcag
      121 aaggccggct actgcgagca cttcagctct tccttcgtgg tgctgatgcg ggccgcgggc
      181 atccccgcgc gcgtcgtcac cggctatgtc ggcggctacc gcaatccgat cggcgactac
      241 tgggcggtgc gccgctcgga tgcgcatgcg tgggcggaag tgtggctggc ggggcgcggc
      301 tgggtgcgcg tggatcccac cgccgcggtc gcgccggagc gcatctacga caccctcgcc
      361 gaccgcgcgc cgggcgcggg cggcctgttc ggcacctcgc tcacgccggc ctacgaattc
      421 ggcgactggc tgcgccgcgg ctggaacgac ttcctgctcg gctacgacgc gacccgccag
      481 cgccagctgc tgcaggcgct gggcatggcc gacaccgaca ccgggcggct gctggccttc
      541 ttcgtcgcga tcgccgtgct cgcgatcggc tggatggtct ggctgaccgc gcgcgccgag
      601 cgcgagcgcg acccggtgct gcgcgccttc cgccggctgg ccgcgcggta cgcccgcctg
      661 ggcctggcgc gcgcgccgca cgagccggcc agcacgtggg cggcgcgggt cggcgccgtc
      721 cgtccggccg aggcgcccgc cctgcacgga ctcatcggcc gtttcgacaa ctggcgctac
      781 gctggcgcca ccggaccgca cgcagcgcgg gccctcgccc gggccctgcg ccggcaccgc
      841 ccgcaatcct gacccggaga tgcagatgaa cgcccgcctt gccagcctca gcctgcttgc
      901 cgcgttgctc gccgcctgcg ccacccagcc gacgccgctg cagggccagt acagcccgat
      961 caccccccgc gatgccaccg accgcgacag caccggcacg atggtgcgct ggggcggccg
     1021 catcgtgcag gtcgagcccc aggaaaaccg cacctgcttc gagatgctgt cgaccggcct
     1081 cgacggttcg ggccgcccgt actggcagac cgacaacgtc ggcggccgct tcatcgcctg
     1141 ccgcaccggg ttctacgacc cggcgctgtt cgagaagaac cgcgaggtca ccttcaccgg
     1201 caaggtgagc ggttacgacc tgcgcaaggt cggcggctac gactaccgct tcccgcacgt
     1261 cgaagccgac gtggtctacc tgtggccggt gcgccagcgg gtcgacgtga tcacccgccc
     1321 ggcgccgtgg ccgtggtggg gatggtggtg agacgttgac caggctccgc ctggtaaacc
     1381 ccgccaatgc gctcccacgc ccccgttccg cttcgcgcga atcgcccccg gcccaggggg
     1441 cttttgccag gttccaatgg gattgtgcgt tcaacgcggc gtgccgaagc gccccagcgg
     1501 cgcgccggcc agcaggtgca ggtggatctg gaacaccgtc tgcccggcct cggcgttgca
     1561 gttcatgacg atgcgatagc cggtatcggc gaagccttcg cgcctggcgt actccgcggc
     1621 cgccaccgcc agccggccca ccaccccggc ctgcgccatc ggcacgtcgt tgagcgtggc
     1681 gaaatccacc ttcggcacga acagcacgtg caccggggcc tgcggcgcga tgtcgcggaa
     1741 ggcgaccagc tcgtcgtcct cgtagacgat gtcggcggga atctcgcggc ggatgatctt
     1801 gtggaagatg gtgtcgctgg acatcggcgc ctccttattg cggcatctcg ctgcgggtgc
     1861 cgaatgcgtg cgacagcgtg ccgcggtcga cgtattcgag ttcgccgccc agcggcacgc
     1921 cgtgcgcgag ccggctcggg cgcacgccgc gctggcgcgc gagctgggcg aggtagtgcg
     1981 cggtcgcctc gccttccacc gtcgggttgg tggcgatgat cagctcctgc acctcgccct
     2041 cggcgaggcg cgcgccgagg cggtcgaggc cgagctcgcg cgggccgatg ccgtcgagcg
     2101 ggctcagccg gccctgcagc acgaagtaca acccgcggta gccggtcgcc tgctcgatcg
     2161 ccaggcggtc ggcgggcgac tcgaccacgc acagcaggtg cgcgtcgcgc gatccactgg
     2221 cgcaggtcgc gcacacctcg gtctcgctga agtcgcggca gcgcgcgcag tggccgatgc
     2281 gctcgaccgc cgccgccagc gcttccgcca gccgctcacc gccggcgcgc tcgcgttcga
     2341 gcacgtggta ggccatgcgc tgcgccgact tgcgcccgac gccgggcagc acgcgcaggg
     2401 cttcgatgag ttgttcgagg agcgcgctca ttcaggagtt ccgattcagg cgcacatgga
     2461 tgtgcgcttg cgctgcacca tcggtgcggc gcggtgccgg gcgaaaacca cgcttttcgc
     2521 ccggcacgcg gatgtggcgg cagggacgcc acatcatccg cacaagatca gaacggaaac
     2581 ttcatcccgg gcggcatcgg catgccggcc gtcgccgcgc cgagcttttc ctgcgacatc
     2641 gcgttggcct tgttgaccgc gtcgttgaag gcggcggcga ccaggtcctc cgccatctcc
     2701 gggtcggaca gcacgctcgg atcgatgcgc accttgcggc attccatgcg gccgctgatc
     2761 gtcacgctga ccatgccgcc accggccgag ccggtgacct ccgccttggc cagttcttcc
     2821 tgcgcgcgct gcatgttctc ctgcatgcgc tgcgcctgct gcatcagttg ggcgatgttg
     2881 cctttcatct cggatcactc ttcaaaagga cggatggaat cgggcaccag ggtggcgccg
     2941 tgccgcgaca tcagctgctg gatgccggga tcggcgagga acgcggcctc ggccgcgtcc
     3001 tggcgcgcgt cgcgctcgcg cgcgctgcgc tggtgcaggg tttcgccggc gcgcgccgtg
     3061 acggtctcga aacggatctg cggggtggcg ccgagcgcgg gcgcgagcgc gtccgcaagc
     3121 gccttagcca gcgcggggga ctgcaggtga tcgtcggcgt gagtcagcga caggcgcagc
     3181 aacgcg
//
LOCUS       DATIQC010000002         8459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_424056, whole genome shotgun sequence.
ACCESSION   DATIQC010000002 DATIQC010000000
VERSION     DATIQC010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8459
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424056"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VLM17_00035"
     CDS             <1..354
                     /locus_tag="VLM17_00035"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR63984.1"
                     /translation="PESVSAILRRLRAAGVEAVLDDFGAGTSALGSVHEFPLRMVKID
                     REVIAQLDRGNPNRGRATVGAVLALTQALGMDAVAEGVETDVQRAFLSRMGCVYGQGH
                     LFGRAQPLAFWLQRR"
     gene            complement(373..2010)
                     /locus_tag="VLM17_00040"
     CDS             complement(373..2010)
                     /locus_tag="VLM17_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR63985.1"
                     /translation="MSQLRRSLLVAGLCVALAAPLHAEDVPATAAAAQPPALPAQLAD
                     FDAYVDNVRATFDVPAIAVAIVRDGQVVLERGYGPRTLGKPGPADAHTLFAIASNTKA
                     FTAASLSILADEGKLALDDRVVDHLPWFRMADAYVTREMRLRDLLAHRSGLSLGAGDL
                     LYWPTTDYSTEEVARRLKDVPLTGEFRGQYAYDNILFGVAQLVVEQASGMSYEQFLQT
                     RIFGPLGMTETRFNADHLQPGDNVATGYAKADFSTLEPASLLTWRNVSGAGGIYSSVH
                     DMAKWMRMQLAGGRYTDARGHEQQLFSARRQQEMWSVLTPMPVADPAVPELAPAKPNF
                     LGYGEGWNLSDYRGHKLAWHTGGWPGMVSRLTLLPQEHAGVIVLTSQEVGGAFNAVTM
                     RALDALLDAPKTDWTAAYAAALARQRGKADEDWKKHLAARDTKSKPSLPLSAYAGTYR
                     DPWYGDVGIAMEGGKPVLRFGHTPELVGDVSLWQHDTFLVRWRDRALNADAFLSFALT
                     PDGKVREARMEPISPLTDFSFDFQDLRLVPVEAKQAR"
     gene            2166..2987
                     /locus_tag="VLM17_00045"
     CDS             2166..2987
                     /locus_tag="VLM17_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006449923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HSR63986.1"
                     /translation="MDLLDRPPTAVDGIRVGIGGWTYAPWRDNFYPKGLVQRRELEYA
                     SRHVSAIEVNGTWYGAQKPATYAKWRDEAPDGFVFAAKAPQRITMARALAKTGPQAED
                     FLAGIATLGDKLGPVVWQFERGRRIDLGELAEFAALLPRSVEGRRLRHVLDVRDPACI
                     GADYLALARRHAIATVFTDSPEHPSFADLTADFVYARLMRSRAEVATGYPDAELDDWA
                     RRAREWAAGEDPADLPRIAPPQDAPASREVFVFFISAAKERNPAAAMALLRRLGA"
     gene            2990..3298
                     /locus_tag="VLM17_00050"
     CDS             2990..3298
                     /locus_tag="VLM17_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR63987.1"
                     /translation="MHLVQLFLPLRDDAGRGFGRALFDEVRATLAERFGGSTAFVRSP
                     AAGLWEGDDGTLEHDDVVLVEVLVDTLDHGWWRDYRHALERRFRQDAILVRALPAETL
                     "
     gene            complement(3304..4194)
                     /locus_tag="VLM17_00055"
     CDS             complement(3304..4194)
                     /locus_tag="VLM17_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007969434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR63988.1"
                     /translation="MNSLPASRAPVASASVLTPVELGVLGAIWGASFLFMRIAAKDFG
                     PFALVEVRLALGALVLLPFLWKARAQFPLRLWPKLALIGAINSATPFLLFAWGAERAP
                     AGIGAIANAMTVLFTALVGFLFFGEKIGRTRALALVVGFAGVVVLASGRTRGANIGGA
                     VAAGATASFLYGIGINLVRRHLTGLPPAAVASATLGTSALLTLPFALAQWPAHAIPAT
                     SWLAAGMLGVLCTGAAFVLYYRLIARIGASRASTVTYLIPVFGVAWAWLLLGEPLTAT
                     MAVSGLLILGSVALSQRAKG"
     gene            complement(4191..5210)
                     /locus_tag="VLM17_00060"
     CDS             complement(4191..5210)
                     /locus_tag="VLM17_00060"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone reductase"
                     /protein_id="HSR63989.1"
                     /translation="MGASTMRAAVYSRVGPAREVLSVAPRPLPVPGPGEVRVRLAWSG
                     VNPSDVKSRAGTRSRTLPFAEITPHSDGAGHIDAVGPGVDARRVGERVWVWNGAWGRA
                     RGTAAESIVLAAAQAVPLPDNVALDAGACLGIPALTAAHAVLMQGGVAGQAVLVAGGA
                     GAVGHYAVQMAKLAGARQVIATVSGVEKAELARAAGADAVVDYRREDVAARVRELTGG
                     KGVDRIVEVDFAANVVQDFAAIARGGRIVVYGSGKPDIPVPFVPAILENVELSFFIVY
                     HLPDAARATAVERLTAWLAAGALWHNIALRLPLEAIAGAHEAVESGRVAGNVVLDLAS
                     PLERP"
     gene            complement(5212..5535)
                     /locus_tag="VLM17_00065"
     CDS             complement(5212..5535)
                     /locus_tag="VLM17_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR63990.1"
                     /translation="MSLPSTFAAHAIDALPAIAVGAGCSRRDLPGVAGVRAWIVDMAP
                     GSAWPRVDVHPAGECYVVLQGEVVEGGARFGAGTCVSFAPGSRHRPRTDTGVRLYGFN
                     PPEAR"
     gene            5647..6531
                     /locus_tag="VLM17_00070"
     CDS             5647..6531
                     /locus_tag="VLM17_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSR63991.1"
                     /translation="MALRSDWLPALAAFEAAARHQNFAHAAEELHLTASAVSHHVRRL
                     ESRLGVALFQRHARGVALTAEGRQLADTAGSALADMEDVLRNLRAGGGEDTVVRVAAL
                     HSWTCGWLLPRLPAFAAAHPDIRISIETGFALARFDDSGPDLGVRHGPGHWPGLSARL
                     LLEEDMFPVAAPAMPGVDRVRGAADIARLPLLADTARQGWPDWFRAAGVRNAQVVERY
                     RFSDSNAALTAAANGLGVALAREHIVPPFLADGRLVALPGPRMRARWSYYVIHPSHRR
                     LRPAARLFADWLLALPEA"
     gene            complement(6563..6910)
                     /locus_tag="VLM17_00075"
     CDS             complement(6563..6910)
                     /locus_tag="VLM17_00075"
                     /inference="COORDINATES: protein motif:HMM:NF016854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HSR63992.1"
                     /translation="MTPEEAEHLHDLFAGFGEVSLRPMFGAHGVYRDGTIFALAIDGG
                     LYLKVDAHSRARFEAAGCAPFVYRMKGRPLPLSYWSAPAEAVESAEAMRPWAELAWAA
                     AARKRAGGGRRRR"
     gene            6993..7940
                     /locus_tag="VLM17_00080"
     CDS             6993..7940
                     /locus_tag="VLM17_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019659149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR63993.1"
                     /translation="MPMTDTRRAFLQIHACVLLWGFTAILGKLITLPALPLVWWRMLL
                     VVGALALVPRVWRGLRAMPARLLLAYAGIGVLVSLHWLTFYGAIKLANASVGATCMAL
                     ATVFTALIEPKLAHRRFSRAEFALGVAVLPGVALVVGGVPHGMRSGIVVGTISALFVA
                     LFGSLNKRLVEHADPLTVTALELGAGTLALGVLAPLMPAIFPAFAGPLLVVPGLHDLL
                     FLLSLSMLCTLLPFTLSLVALRHMSAFAAQLAVNLEPVYAIVLAVLLLGEQHELTPRF
                     YAGVAIILGAVLLFPLLARPQRIGHAEVLATAEAKELTE"
     gene            8014..>8459
                     /locus_tag="VLM17_00085"
     CDS             8014..>8459
                     /locus_tag="VLM17_00085"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR63994.1"
                     /translation="MVLEYYGLAEPPFSITPDPRFVFLSERHRDALAHLLYGIGQGGG
                     GGFVQLTGEVGTGKTTLCRLLLEQVPETTRVALVLNPRQTPVELLETICEELHLGIDG
                     KRGSAKALVDALNAYLLDAYAQGLRVVLIVDEAQDLSAEALEQVRLL"
BASE COUNT         1134 a         3111 c         3038 g         1176 t
ORIGIN      
        1 cccgaatcgg tcagcgcgat cctgcgccgg ctgcgcgcgg ccggcgtgga agccgtcctc
       61 gacgacttcg gcgcgggcac ctcggcgctg ggctcggtgc acgagttccc gctgcgcatg
      121 gtcaagatcg accgcgaggt gatcgcccag ctcgaccgcg gcaatcccaa ccgtggacgc
      181 gccaccgtcg gcgcggtgct cgcgctgacc caggcgctgg gcatggacgc ggtcgccgag
      241 ggcgtcgaga ccgacgtcca gcgcgccttc ctgtcgcgca tgggctgcgt ctacggccag
      301 ggccacctgt tcggtcgcgc gcagccgctg gcgttctggc tgcagcgccg ctgacgcccc
      361 tgcgggaccg ggctaccttg cctgtttcgc ctccaccggg acgagccgca ggtcctggaa
      421 gtcgaagctg aagtcggtca gcggcgagat cggctccatc cgcgcctcgc gcaccttgcc
      481 gtcgggcgtc agcgcgaagc tcaggaacgc gtccgcgttg agcgcgcggt cgcgccagcg
      541 cacgaggaag gtgtcgtgct gccagaggct gacgtcgccg accagttccg gcgtgtggcc
      601 gaaacgcagg accggcttgc cgccttccat ggcgatgccg acgtcgccgt accaggggtc
      661 gcggtaggtg ccggcgtaag ccgacagcgg caacgagggc ttcgacttcg tgtcgcgcgc
      721 cgcgaggtgc ttcttccagt cctcgtcggc ctttccgcgc tgcctggcca gcgccgccgc
      781 ataggccgcg gtccagtcgg ttttcggcgc gtcgagcagc gcatcgagcg cgcgcatggt
      841 caccgcgttg aacgcaccgc cgacttcctg gctggtcagc acgatcacgc cggcgtgctc
      901 ctgcggcagc agcgtcagcc gcgagaccat ccccggccag ccgccggtgt gccaggcgag
      961 cttgtggccg cggtagtcgg acaggttcca gccttccccg tagccgagga aattgggctt
     1021 ggccggcgcg agctccggca ccgcggggtc ggcgaccggc atcggcgtca gcaccgacca
     1081 catctcctgc tggcgcctgg cgctgaacaa ctgctgttcg tggccccggg cgtcggtgta
     1141 gcggccgccg gccagctgca tgcgcatcca cttcgccatg tcgtgcacgc tggaatagat
     1201 cccgcccgcg ccggacacgt tgcgccaggt cagcagcgag gcgggttcga gcgtgctgaa
     1261 gtccgccttc gcgtagccgg tcgccacatt gtcgccgggc tgcaggtgat cggcgttgaa
     1321 gcgcgtttcg gtcatgccga gcgggccgaa gatgcgcgtc tgcaggaact gttcgtagga
     1381 catcccgctc gcctgctcga ccaccagctg ggcgacgccg aacaggatgt tgtcgtaggc
     1441 gtactggccg cggaactcgc cggtcagcgg cacgtccttg agccggcgcg cgacctcctc
     1501 cgtgctgtag tcggtggtcg gccagtacag caggtcgccg gcgcccaggc tgaggccgct
     1561 gcggtgcgcg agcaggtcgc ggaggcgcat ctcgcgcgtc acgtaggcat cggccatccg
     1621 gaaccacggc aggtggtcga ccacccggtc gtcgagggcc agcttgcctt cgtcggcgag
     1681 gatggacagc gaggccgcgg tgaacgcctt ggtgttggaa gcgatcgcga acagcgtgtg
     1741 cgcatcggcg ggcccgggct tgccgagcgt gcgcggcccg tagccgcgtt ccagcacgac
     1801 ctgcccgtcc ctgacgatgg cgaccgcgat cgccggcacg tcgaaggtcg cgcggacgtt
     1861 gtcgacgtag gcgtcgaagt cggcgagctg cgcgggcagc gcgggcggct gcgcggcggc
     1921 agccgtcgcc ggcacatcct ccgcatgcag cggcgcggcg agcgcgacgc acaggccagc
     1981 caccagcaac gaacgacgca actgcgacat cgcattctcc tgcacggatt tggaagcctc
     2041 ctccgccgga ggaggatgga gcgaggccgt agcaccggcg ggccccggct gccggcatgc
     2101 cgcagtatcc catccgtccc ccgcgcgtcg acgtgccatc ggccatgccg cgctaagctg
     2161 ccggcatgga cctgctcgac cgcccgccca ccgccgtcga tggcatccgc gtcggcatcg
     2221 gcggctggac ctacgcgccg tggcgcgaca acttctatcc gaagggcctg gtgcagcggc
     2281 gcgagctgga atacgccagc cgccacgtca gcgcgatcga ggtcaacggc acctggtatg
     2341 gcgcgcagaa gccggcgacg tatgcgaagt ggcgcgacga ggcgccggac ggcttcgtgt
     2401 tcgcggccaa ggcgccgcag cgcatcacca tggcgagggc gctggcgaag accggtccgc
     2461 aggccgagga cttcctcgcc ggcatcgcca ccctcggcga caagctcgga ccggtcgttt
     2521 ggcagttcga gcgcgggcgc cgcatcgacc tcggcgagct cgccgaattc gccgccctgc
     2581 tgccacgctc ggtcgaaggc cggcgcctgc gccacgtcct agacgtgcgc gacccggcct
     2641 gcatcggcgc cgactacctc gcgctcgcgc gacggcatgc gatcgcgacg gtgttcaccg
     2701 actcgcccga gcatccgtcc ttcgcggacc tcaccgccga tttcgtctat gcgcggctga
     2761 tgcgttcgcg cgccgaggtg gcgacgggct atccggacgc cgagctcgac gactgggccc
     2821 ggcgcgcgcg cgaatgggcc gccggcgaag acccggccga cctcccgcgc atcgcgccgc
     2881 cgcaggacgc accggcgtcg cgcgaggtgt tcgtcttctt catcagcgcc gcgaaggaac
     2941 gcaatccggc ggccgcgatg gcgctgctgc ggcggctggg cgcctagcga tgcacctcgt
     3001 ccagctgttc ctgccgctgc gcgacgacgc cggacgcggg ttcgggcggg cgctgttcga
     3061 cgaggtgcgc gccacgctcg ccgaacgttt cggcggcagc accgcgttcg tgcgctcgcc
     3121 cgcggccggc ctgtgggaag gcgacgacgg caccctggag cacgacgacg tcgtgctggt
     3181 cgaagtcctc gtcgacacgc tcgaccacgg ctggtggcgc gactaccgcc acgcactcga
     3241 gcggcgcttc cggcaggacg cgatcctcgt gcgcgcgctg cccgccgaga cgctgtagcc
     3301 ggttcagccc ttcgcgcgct ggctcagcgc cacgctgccg aggatgagca ggccgctcac
     3361 cgccatcgtc gccgtcagcg gctcgcccag cagcagccat gcccacgcca cgccgaacac
     3421 cgggatcagg taggtcacgg tcgaggcgcg gctggcgccg atgcgcgcga tcaggcggta
     3481 gtagaggacg aaggcggcgc cggtgcagag cacgccgagc atgcccgccg ccagccacga
     3541 ggtcgccggg atggcatgcg ccggccactg cgccagcgcg aacggcaggg tcagcagcgc
     3601 ggaggtcccg agggtcgccg aggcgaccgc cgcgggcggc agcccggtga ggtggcggcg
     3661 caccaggttg atgccgatgc cgtagaggaa cgaggccgtc gcgcccgccg cgaccgcgcc
     3721 gccgatgttg gcgccgcgcg tcctgccgct cgccagcacc accacgccgg cgaatcccac
     3781 caccagcgcc agcgcgcgcg tgcggccgat cttctcgccg aagaacagga agccgaccag
     3841 ggcggtgaac aggaccgtca tcgcgttggc gatcgcgccg atgccggcgg gcgcgcgctc
     3901 ggcgccccag gcgaacagca ggaaaggcgt cgccgaattg atcgcgccga tcagtgccag
     3961 cttcggccac aggcgcaagg gaaactgcgc gcgcgccttc cacaggaacg gcagcagcac
     4021 cagtgcgccg agcgccaggc gcacctcgac cagcgcgaac gggccgaagt ccttcgccgc
     4081 gatgcgcatg aacaggaacg acgcgcccca gatcgcgccg agcacgccga gttccacggg
     4141 ggtcaggacg ctggcggagg cgacgggggc acggctggcg ggaagggagt tcatgggcgc
     4201 tccagggggg aagccaggtc gagcacgacg ttgccggcga cgcgacccga ttcgactgct
     4261 tcgtgcgcgc cggcgatcgc ctccagcggc aggcgcagcg cgatgttgtg ccacagcgca
     4321 ccggcggcga gccacgccgt caaccgttcc accgcggtcg cgcgcgcggc gtcgggcagg
     4381 tggtagacga tgaagaacga cagctcgacg ttctcgagga tcgcaggaac gaacggcacc
     4441 gggatatccg gtttcccgct gccgtagacg acgatgcggc cgccgcgcgc gatcgccgcg
     4501 aagtcctgga cgacgttcgc ggcgaagtcg acctcgacga tgcggtcgac gcccttgccc
     4561 ccggtcagct cgcgcacgcg cgcggcgacg tcctcgcgcc ggtagtcgac caccgcatcg
     4621 gcgcccgcgg cgcgcgccag ctccgccttc tccacgccgc tcaccgtggc gatgacctgc
     4681 cgcgcgccgg ccagtttcgc catctgcacg gcgtagtggc cgaccgcgcc ggcgccgccg
     4741 gccaccagca cggcctggcc ggcgacgccg ccctgcatca gcaccgcgtg cgccgcggtc
     4801 agcgcgggaa tgccgaggca ggcgccggcg tccagcgcca cgttgtccgg caacggcacc
     4861 gcctgcgccg cggccagcac gatcgattcc gcggccgtgc cccgtgcccg gccccaggcg
     4921 ccattccaca cccacacccg ctcgccgacg cgcctcgcat cgacgcccgg acccaccgcg
     4981 tcgatgtggc cggcgccgtc gctgtgcggg gtgatctcgg cgaacggcag cgtgcggctg
     5041 cgggtaccgg cgcggctctt cacgtcggac ggattcacgc ccgaccatgc gaggcgcacg
     5101 cgcacctcgc ccgggcccgg cacgggcagc gggcgcggtg cgaccgacag cacctcgcgc
     5161 gccgggccga cccgcgagta caccgcggca cgcatcgtgg acgcgcccat gtcagcgcgc
     5221 ctccggcggg ttgaagccgt acaggcgcac gccggtatcg gtgcgcgggc ggtggcggct
     5281 gccgggcgcg aagctcacgc aggtgccggc gccgaagcgc gcaccgcctt cgaccacttc
     5341 cccctgcagg accacgtagc actcgccggc cggatgcaca tcgaccctgg gccaggcact
     5401 gccaggcgcc atgtcgacga tccaggcgcg gacgccggcc accccgggga ggtcgcgccg
     5461 gctgcagccg gcgccgacgg cgatggccgg cagcgcgtcg atggcgtgcg cggcgaaggt
     5521 ggagggcagc gacatcggat cctcggcaca agcggaattg gcggttgcgg gccattgtcc
     5581 cccgcgccac cggcgggaca agcgcatact ttcgaacgga cccgcaaatc tggcttgagg
     5641 ctcggcatgg ccctgcgctc ggactggctg cccgcgctcg ccgcgttcga ggcggccgcg
     5701 cgccaccaga acttcgccca tgcggcggag gaactgcacc tcaccgccag cgcggtcagc
     5761 caccacgtgc gccggctcga gtcgcgcctt ggcgtggccc tgttccagcg ccacgcgcgc
     5821 ggcgtcgccc tgactgccga aggccgccag ctcgccgaca ccgccggcag cgccctcgcc
     5881 gacatggagg acgtgctgcg caacctgcgc gcgggcggcg gcgaagacac ggtggtgcgg
     5941 gtggcggcgc tgcattcgtg gacctgcggc tggctgctgc cgcggctgcc ggcgttcgcc
     6001 gcggcgcatc cggacatccg catcagcatc gagaccgggt tcgcgctcgc ccgcttcgac
     6061 gacagcggtc cggacctggg cgtgcgccac ggccccgggc actggcccgg gctcagcgcg
     6121 cggctgctgc tggaggagga catgttcccg gtggcggcgc cggccatgcc cggcgtggac
     6181 cgcgtgcgcg gcgcggcgga catcgcgcgc ctgccgctgc tggccgacac cgcgcggcag
     6241 ggctggccgg actggttccg tgcggccggg gtgcgcaacg cgcaggtggt cgagcgttac
     6301 cgcttcagcg actcgaatgc cgcactgacc gccgcggcca acggcctcgg cgtggcactc
     6361 gcgcgcgagc acatcgtgcc gccgttcctc gcggacggcc gcctggtcgc cctgcccggc
     6421 ccgcgcatgc gcgcgcgctg gagctactac gtgatccatc cctcgcaccg gcggctgcgg
     6481 ccggcggcgc ggctgttcgc ggactggctg ctggccctgc cggaggcgtg agtgcagccg
     6541 cttgcggcag cggccgccac cgtcagcgac ggcgcctgcc gccgccggcg cgcttgcgcg
     6601 ccgccgccgc ccacgccagt tccgcccacg gccgcatcgc ctccgccgat tccaccgcct
     6661 cggccggtgc ggaccagtag ctgagcggca acggccgacc cttcatgcgg tagacgaatg
     6721 gcgcgcagcc ggcggcctcg aagcgcgcgc ggctgtgcgc gtcgaccttg aggtacaggc
     6781 caccgtcgat ggcgagcgcg aagatcgtgc cgtcgcggta cacgccgtgg gcgccgaaca
     6841 tcggccgcag cgacacttcg ccgaagccgg cgaacaggtc gtgcaggtgt tccgcttcct
     6901 cgggtgtcac gtggtcttcc ctcgtcgatc cgtgatccgc cgcgcggttc cggccgccgg
     6961 cggcggagcg gccacgggcg ataatcgcac ccatgccgat gaccgacacg cgcagggcct
     7021 tcctgcagat ccacgcctgc gtcctgctgt ggggcttcac cgccatcctg ggcaagctca
     7081 tcaccctgcc ggcgctgccg ctggtgtggt ggcgcatgct gctggtggtc ggcgcgctcg
     7141 cgctcgtgcc gcgcgtgtgg cgcggcctgc gcgcgatgcc ggcgcggctg ctgctcgcgt
     7201 acgccggcat cggcgtactg gtgtcgctgc actggctgac cttctacggc gcgatcaagc
     7261 tggcgaacgc ctccgtcggc gcgacctgca tggcgctggc cacggtgttc accgccctga
     7321 tcgagccgaa gctcgcgcac cggcgcttct cgcgcgccga attcgcgctc ggggtcgcgg
     7381 tgctgccggg cgtcgcgctg gtggtcggcg gcgtgccgca cgggatgcgc tcgggcatcg
     7441 tggtcggcac gatctcggcg ctgttcgtgg cgttgttcgg ctcgctcaac aagcggcttg
     7501 tggagcatgc cgatccgctc acggtgacgg cgctggaact cggcgccggc acgctggcac
     7561 tgggcgtgct cgcaccgctg atgcccgcca tcttccccgc cttcgccgga ccgctgctgg
     7621 tggtgccggg cctgcacgac ctgctcttcc tgctctcgct gtcgatgctg tgcacgctgc
     7681 tgccgttcac gttgtcgctg gtcgcgctgc ggcacatgag cgcattcgcg gcgcagctgg
     7741 cggtgaacct ggagccggtg tacgcgatcg tgctcgccgt cctgctgctc ggcgaacagc
     7801 atgaactcac gccccggttc tacgcgggcg tggccatcat cctcggcgcg gtgctgttgt
     7861 tcccgttgct ggcgcggccg cagcggatcg gccacgccga ggtgctggcc acggccgaag
     7921 cgaaggaact gaccgagtag cccggcgctt gcgtgcccgc cccgagccgt ttcgtggcag
     7981 gctagcggca gttccccgcc cacgggtccg cgcatggtcc tcgagtacta cggcctggcc
     8041 gagccgccgt tctcgatcac gcccgacccg cgcttcgtct tcctcagcga gcgccaccgc
     8101 gacgccctcg cgcacctgct gtacggcatc ggccagggcg gcggcggcgg cttcgtgcag
     8161 ctgaccggcg aggtcggcac cggcaagacc acgctgtgcc ggttgctgct ggagcaggtc
     8221 cccgaaacca cccgcgtcgc cctcgtgctc aacccgcggc agacgccggt cgagctgctg
     8281 gagacgatct gcgaggaact gcacctcggc atcgatggca agcgcggcag cgcgaaggcg
     8341 ctggtggacg cgctcaacgc ctacctgctc gacgcctacg cgcagggcct gcgggtggtg
     8401 ctgatcgtgg acgaggcgca ggacctgtcg gccgaggcgc tcgagcaggt gcgcctgct
//
LOCUS       DATIQC010000003         1996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_636092, whole genome shotgun sequence.
ACCESSION   DATIQC010000003 DATIQC010000000
VERSION     DATIQC010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_636092"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1996)
                     /locus_tag="VLM17_00090"
     CDS             complement(<1..>1996)
                     /locus_tag="VLM17_00090"
                     /inference="COORDINATES: protein motif:HMM:NF023266.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HSR63995.1"
                     /translation="NDVAVANSPEVKSEKLGNGWKKVTFARTEALPSYLVAFAVGPWD
                     VPQGPDIAPNGERANPVPLRGVAAQGQGGKMHYSLAHTPEIVRALEDYFGIPYPFAKL
                     DNVAAPDFWAGAMENAGLIVYRDSLMFPDETSAVSRRQSFWGVSAHELAHQWFGDLVT
                     MQWWDDTWLNEGFATWMGNKIHGRLQPQAHTDRGLLEGAIGAMGADSLASTRRVHEPI
                     RNFTDIQSAFDGITYQKGGATLNMFEQFIGPEQFRTGIRNYLRAHARGNATSADLIHA
                     VAAQSSDPDGVAKAFFSFIDQPGVPFVKVDLACGHGKPALVLSQQRYLPIGSTASSAQ
                     TWGIPLTVRYADSSGVHEQKALVTGGQARVELADAASCPAWVMPNAHGNGYYRFALAP
                     ALQQALSKAFAQLDEREQRMAADSVVSAYGAGALSPSQLLAALPQFASANVRQTVTAG
                     MYSTEWMAEHLLGDDAARKAFHARVAAIYRPRLDQLGLTPKAGEADDDALLRGSLVGF
                     FANTLEDPAVRAAMNQRGRAVLGLGGDGQPAPGALRLDAVSQDLRSTSLAVAVEEGGR
                     PAFDAAEKAFRASQDAVLRSQLLSAMGGTRDPALNERARALVTEPGLLRRNEIFSAVG
                     GQSDEAATRPALRDWIDARFKELEARLAPAGAAMVGLYADG"
BASE COUNT          269 a          710 c          721 g          296 t
ORIGIN      
        1 tgccgtcggc atacaggccg accatcgccg cgccggcggg ggcgaggcgc gcctcgagct
       61 ccttgaagcg cgcatcgatc cagtcgcgca acgcgggccg cgtcgccgcc tcgtcggact
      121 ggccaccgac cgcggagaag atctcgttgc ggcggagcag gccgggctcg gtcaccagcg
      181 cgcgtgcgcg ctcgttcagc gcagggtccc gcgtgccgcc catcgccgac agcagctggc
      241 tgcgcagcac cgcgtcctgg ctggcacgga aggctttctc ggcggcatcg aacgccggcc
      301 tgccgccctc ctccaccgcc accgcgagcg aggtcgagcg caggtcctgc gacacagcat
      361 cgaggcgcaa cgcgcccggc gcaggctggc cgtcgccacc gaggccgagc accgcgcggc
      421 cgcgctggtt catcgccgcg cgcaccgcgg gatcctccag cgtgttggcg aagaagccga
      481 ccaggctgcc gcgcagcagc gcatcgtcgt cggcttcgcc ggccttcggc gtcaggccga
      541 gttggtcgag gcgcggacgg tagatcgcgg cgacccgggc gtggaaggcc ttgcgcgcgg
      601 cgtcgtcgcc gagcaggtgc tcggccatcc actcggtcga gtacatgccg gcggtgacgg
      661 tctggcgcac gttcgccgac gcgaactgcg gcaacgcggc cagcagttgc gacggcgaca
      721 gcgcgccggc gccgtaggcc gaaaccaccg agtcggcggc catgcgctgc tcgcgctcgt
      781 cgagctgcgc gaacgccttc gacagcgcct gctgcagcgc gggcgcgagc gcgaagcggt
      841 agtagccgtt gccgtgcgcg ttcggcatca cccaggccgg gcacgacgcg gcatcggcca
      901 gctcgacgcg cgcctgcccg ccggtgacca gcgccttctg ctcgtgcacg ccgctggagt
      961 cggcatagcg caccgtgagc gggatgcccc aggtctgcgc gctgctggcg gtcgagccga
     1021 tcggcaggta gcgctgctgc gacagcacca gcgcgggctt gccgtggccg cacgcgaggt
     1081 cgaccttgac gaacggcacg cccggctggt cgatgaagct gaagaaggcc ttggcgacgc
     1141 cgtcgggatc gctgctctgc gcggcgaccg cgtggatcag gtcggcgctg gtcgcattgc
     1201 cgcgcgcgtg cgccctgagg tagttgcgga tgccggtgcg gaactgctcg gggccgatga
     1261 actgctcgaa catgttgagc gtggcgccgc ccttctggta ggtgatgccg tcgaaggccg
     1321 actggatgtc ggtgaagttc cggatcggct cgtgcacgcg gcgggtgctg gcgaggctgt
     1381 cggcgcccat cgcgccgatc gcgccttcca gcaggccgcg gtcggtgtgc gcctgcggct
     1441 gcagccggcc atggatcttg ttgcccatcc aggtggcgaa accttcgttg agccaggtgt
     1501 cgtcccacca ctgcatcgtc accaggtcgc cgaaccactg gtgcgcgagc tcgtgcgcgc
     1561 tcacgcccca gaacgactgc cggcgcgaca ccgcggaggt ttcgtcgggg aacatcaggc
     1621 tgtcgcggta gacgatcagg ccggcgttct ccatcgcgcc cgcccagaag tccggcgcgg
     1681 cgacgttgtc gagcttggcg aacggatacg gaatgccgaa gtagtcctcc agcgcgcgca
     1741 cgatctctgg ggtgtgcgcg agcgagtagt gcatcttccc gccctgcccc tgcgcggcca
     1801 cgccgcgcag cggaacggga ttcgcgcgct cgccgttcgg cgcgatgtcc ggcccctgcg
     1861 gcacgtccca cggcccgacc gcgaacgcga ccaggtagct cggcagcgcc tcggtgcgcg
     1921 cgaacgtgac cttcttccag ccgttgccga gcttctcgct cttcacctcg gggctgttgg
     1981 cgacggccac gtcgtt
//
LOCUS       DATIQC010000004         3651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_176881, whole genome shotgun sequence.
ACCESSION   DATIQC010000004 DATIQC010000000
VERSION     DATIQC010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3651
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176881"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /locus_tag="VLM17_00095"
     CDS             complement(<1..491)
                     /locus_tag="VLM17_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005990351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HSR63996.1"
                     /translation="MELGMVGLGRMGANMARRLLRGGHAVTGFDPKAEARDAIAKDGA
                     GSADSLQALVAALPAPRAVWVMVPAGKITDDTIDTLASLLSPGDAIVDGGNSNYRDTL
                     RRAAALQARGIGFVDAGTSGGVWGLEQGYSLMVGGDNATVERLRPVLETLAPAKDRGW
                     GHVG"
     gene            604..1437
                     /locus_tag="VLM17_00100"
     CDS             604..1437
                     /locus_tag="VLM17_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR63997.1"
                     /translation="MQDLRVTLVQGATRWLDPAANRAHYGQLVAPLHGHTDLVLLPET
                     FTSGFSNEAIHDAETMEGPTVAWIREQAARLGAAVCGSVQLREGDGVFNRLLFATPDG
                     ALRHYDKRHLFRYAREHERYAGGRERLTVEWRGWRICPLVCYDLRFPVFSRNRFDAER
                     PGALDYDLLVYVANWPSARAHAWKTLLRARAIENLCFVAGLNRVGTDGNGLHYAGDSA
                     VLDFLGQPLSECTDEEVVVTATLPAAELQAHRTRFPAMLDADAFSMADGSLAAESAPT
                     G"
     gene            complement(1427..1774)
                     /locus_tag="VLM17_00105"
     CDS             complement(1427..1774)
                     /locus_tag="VLM17_00105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR63998.1"
                     /translation="MVATFRLDPSLTQGLQMGDRWVSPPEFYFAQPGTQFVVEAKAQN
                     LDARGARLDVSGNWAATNPEMVAITRQPDGVMLVVREPGESDVTLRAGSGVVTLHISA
                     EQLPDSMRVRISQ"
     gene            complement(1948..>3651)
                     /locus_tag="VLM17_00110"
     CDS             complement(1948..>3651)
                     /locus_tag="VLM17_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR63999.1"
                     /translation="NIGVPTDADGASNGVVSPAGCDPFDGFVLTVGSGAASPTDRLQF
                     TQMEANFSLFAGLSLQTWLELMISDDTPFDRFLDRNPEAFRGFAGSAIPLCTATGNRQ
                     PCLTQVEGFNRAAPSSAQLDRLLGFDLFFGTNLTNRNRNFRTARCGGCHAGGTLTDDG
                     IAMTGRLTVPDFMPKFSTPGTLLARRPVGRPRQLTGFLLEAAVNDNAEGAIRRNLINQ
                     TQADASGLSHPQGAAFFDNGMYDIGVRPTNEDLLRGGTDGYGWPLSLATLMLKNAGGT
                     NVIPGTSLPTFDPDASSDCAPNCATGGLFASTAQDAHINPGFSGRLLNPQLPPHLAPW
                     INPPQLGRSHPELGEVGAGLNAVTTVDIVDSYLDLLGPFNPRARLNPEKNAAQGFLFG
                     TAPGVNRVGRMGSAKVPDLRNVELTGPYFHNGGKLTLRQVVNFYAHGGDFPVTNGAHR
                     DFNIVDLDHDVQSTLSAADRVALTAFLLSLTDERVAHEQAPFDRPEIFLAVDGRAPDN
                     SGGRGTLITQSSGTSVCGAAICFRRLTAVGAEGHAARLPSFLDVSATPVTGSNNDHFD
                     Q"
BASE COUNT          491 a         1266 c         1362 g          532 t
ORIGIN      
        1 ccgacgtggc cccagccgcg gtccttcgcc ggcgccagcg tctcgaggac cgggcgcagg
       61 cgctcgaccg tggcgttgtc gccgccgacc atcaggctgt agccctgttc gagcccccac
      121 accccgccgc tggtgccggc gtcgacgaag ccgatgcccc gggcctgcag cgcggccgcg
      181 cggcgcagcg tgtcccggta gttggaattg ccgccgtcga cgatggcgtc gccgggcgag
      241 agcagcgacg ccagcgtgtc gatcgtgtcg tcggtgatct tccccgccgg caccatcacc
      301 cacaccgcgc gcggggcggg cagggcggcg accagcgcct gcagcgaatc ggcgctgccc
      361 gcgccgtcct tcgcgatggc gtcgcgcgcc tcggccttgg gatcgaagcc cgtgaccgcg
      421 tgcccgccgc gcagcagccg ccgcgccatg ttcgcgccca tgcggccgag gccgaccatg
      481 ccaagttcca tgtggttcct ccgaagcgtt gcggcgccat gatggcgcgg gagccgtggc
      541 cgtcctgtcg tcgcggcgtg gccgggatta tgctgggcac gaccttccaa cgcgccatcc
      601 cgcatgcagg atctccgcgt caccctcgtc cagggcgcca cccgctggct ggacccggcg
      661 gccaaccgcg cgcattacgg gcagctggtc gcgccgctgc acggccacac cgacctcgtc
      721 ctgctgccgg agaccttcac cagcggtttc tccaacgagg cgatccacga cgccgaaacg
      781 atggaagggc cgaccgtcgc ctggatccgc gaacaggccg cgcgcctcgg cgccgccgtg
      841 tgcggcagcg tgcagctacg cgagggcgac ggggtcttca accggttgct gttcgcgacg
      901 ccggacggcg cgctgcgcca ttacgacaag cgccacctgt tccgctacgc cagggagcac
      961 gagcgctacg ccggcggccg ggaacgcctc accgtcgaat ggcgcggctg gcggatctgc
     1021 cccctggtct gctacgacct gcgcttcccg gtgttctcgc gcaaccgctt cgacgccgag
     1081 cgcccgggcg cgctcgacta cgacctgctg gtgtacgtgg cgaactggcc gtcggcgcgc
     1141 gcccacgcgt ggaagacgct gctgcgcgcg cgggcgatcg agaacctgtg cttcgtcgcc
     1201 ggactcaacc gcgtcggcac cgatggcaac ggcctgcact acgccggcga cagcgccgtg
     1261 ctcgacttcc tcggccagcc gctgagcgaa tgcaccgacg aggaagtcgt cgtcaccgcc
     1321 acgctgcccg ccgcggaact gcaggcgcat cgcacgcgct tcccggcgat gctcgacgcc
     1381 gacgcgttct cgatggcgga tggctccctc gccgcggaaa gcgcgcctac tggctgatcc
     1441 gcacgcgcat cgagtccggc agctgctcgg cgctgatgtg cagcgtcacg acgccgctgc
     1501 cggcgcgcaa ggtgacgtcg ctttcgcccg gttcgcgcac caccagcatg accccgtcgg
     1561 gctggcgggt gatcgcgacc atttccgggt tggtggccgc ccagttgccg ctgacgtcca
     1621 gtcgcgcgcc gcgcgcgtcg aggttctgcg ccttggcctc gaccacgaac tgcgtaccgg
     1681 gctgggcgaa gtagaactcc ggcggcgaga cccagcggtc gcccatctgg aggccctggg
     1741 tcagggacgg gtcgagccgg aaggtggcca ccatgcgggg gatcggcgcc gcctgggggg
     1801 acgccggcgc ggaggtcgga ggaggcgccg acgcgagcgg cccggcgtcc ccgggggaaa
     1861 cggcgcggcg ggtgagcgcg aagccggtcg cggccaacat caccagcagg cccgcctgcc
     1921 acagcattcg tcgggtggag gatgcgttca ttggtcgaag tggtcgttgt tgctgccggt
     1981 gaccggcgtg gcggagacgt cgaggaagga aggcagccgc gcggcatgcc cctccgcgcc
     2041 gaccgcggtc aagcggcgga agcagatcgc cgcgccgcac acgctggtgc cgctgctctg
     2101 ggtgatcagg gtgccgcggc cgccgctgtt gtcgggcgcg cgtccgtcca ccgccaggaa
     2161 gatctccggg cggtcgaacg gcgcctgctc gtgggcgacc cgctcgtcgg tcaggctgag
     2221 caggaaggcg gtgagcgcga cgcggtcggc cgcggacagc gtcgactgca cgtcgtggtc
     2281 gaggtcgacg atgttgaagt cccggtgcgc cccgttcgtg accgggaagt cgccgccgtg
     2341 cgcgtagaag ttcaccacct ggcgcagggt gagcttgccg ccgttgtgga agtacgggcc
     2401 ggtgagctcg acgttgcgca ggtccggcac cttggcgctg cccatgcggc cgacccggtt
     2461 cacgcccggc gcggtgccga acaggaagcc ctgcgccgcg ttcttctccg gattgagccg
     2521 cgcgcgcggg ttgaacggcc cgagcaggtc gaggtagctg tcgacgatgt ccaccgtggt
     2581 gaccgcgttg aggccggccc cgacctcgcc gagttccggg tgcgacctgc ccagctgggg
     2641 cggattgatc cacggcgcca ggtgcggcgg cagctgcggg ttgagcaggc gtccgctgaa
     2701 gcccgggttg atgtgcgcgt cctgcgcggt ggaggcgaac agcccgccgg tcgcgcagtt
     2761 cggcgcgcag tcgctgctgg cgtcggggtc gaaggtcggc agcgacgtgc cgggaatcac
     2821 gttcgtgccg ccggcgttct tcagcatcag cgtggccagc gacagcggcc agccgtagcc
     2881 gtcggtgccg ccgcgcagca ggtcctcgtt cgtcggccgc acgccgatgt cgtacatgcc
     2941 gttgtcgaag aacgccgcgc cctgcgggtg cgacaggccg ctggcgtccg cttgcgtctg
     3001 gttgatcagg ttgcggcgga tggcgccctc ggcgttgtcg ttgaccgccg cctcgagcag
     3061 gaacccggtg agctggcggg gacgcccgac cggccggcgg gcgagcaggg tgcccggagt
     3121 ggagaacttc ggcatgaagt cgggcacggt cagccggccg gtcatcgcga tcccatcgtc
     3181 ggtgagcgtg ccgccggcgt ggcagccgcc gcagcgggcg gtgcggaagt tgcggttgcg
     3241 attggtgagg ttggtgccga agaacaggtc gaagccgagc agccggtcga gctgcgccga
     3301 ggagggcgcg gcgcggttga aaccctcgac ctgggtcagg cacggctggc ggttgccggt
     3361 cgccgtgcac agcgggatcg ccgagccggc gaagccgcgg aaggcttccg gattgcggtc
     3421 gaggaagcgg tcgaagggcg tgtcgtcgga gatcatcagc tccagccagg tctgcagcga
     3481 gagcccggcg aacaggctga agttcgcttc catctgggtg aactgcaggc ggtcggtcgg
     3541 cgaggccgcg ccgctgccga ccgtcagcac gaagccgtcg aacggatcgc acccggccgg
     3601 cgagaccacg ccgttgctgg cgccgtcggc gtcggtgggc acgccgatgt t
//
LOCUS       DATIQC010000005         2746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_247737, whole genome shotgun sequence.
ACCESSION   DATIQC010000005 DATIQC010000000
VERSION     DATIQC010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2746
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247737"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VLM17_00115"
     rRNA            <1..364
                     /locus_tag="VLM17_00115"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            530..642
                     /gene="rrf"
                     /locus_tag="VLM17_00120"
     rRNA            530..642
                     /gene="rrf"
                     /locus_tag="VLM17_00120"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(1022..1672)
                     /gene="rpiA"
                     /locus_tag="VLM17_00125"
     CDS             complement(1022..1672)
                     /gene="rpiA"
                     /locus_tag="VLM17_00125"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005994531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HSR64000.1"
                     /translation="MSEGKRLAGEKAIEFVEDDMIIGVGTGSTVAFFIDALARVRHRI
                     AGAVSSSEQSTARLRQHGIEVLDLNHTGPLSLYVDGADECDPQRRLIKGGGAALTREK
                     IIAEASRTFVCIIDPSKQVDVLGRFPLPVEVIPMARSLVARELVALTGGQPVWREGVV
                     TDNGNWVLDLHGLAITDPLALESAVNQIPGVVTVGLFARRPADIVIVGDQTPRVLR"
     gene            complement(1675..2142)
                     /locus_tag="VLM17_00130"
     CDS             complement(1675..2142)
                     /locus_tag="VLM17_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HSR64001.1"
                     /translation="MSPRTRHWLMKSEPGDFSIDDLARVGVEPWTGVRNYQARNFMRQ
                     MQAGDGVLFYHSNTEVPGVYGVAEVASAAYPDPTQFDRRSKYYDEKATREQPRWDLVD
                     VRYARTLKRPVSLDAIRAKADVLGEDFALIRKGSRLSVLPVSAAQWKTILSLE"
     gene            complement(2139..2726)
                     /locus_tag="VLM17_00135"
     CDS             complement(2139..2726)
                     /locus_tag="VLM17_00135"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006451378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HSR64002.1"
                     /translation="MTDRPSLRRQLRAARRALPATERIAAAEALAARLLALPFAPSAG
                     HVAGYWAMDGEIALHAWQLRLPPGCTYCLPVLGDDDCLRFAPWRPGSPLRENRFGIPE
                     PDLAPGELIAPERMALVVVPLVGFDAEGQRLGMGGGWYDRTFAFRRTQAAPPWLAGAG
                     FALQRLDALPAEPWDVGLDAVCTERGAFLTHRIPA"
BASE COUNT          442 a          903 c          973 g          428 t
ORIGIN      
        1 ccaagggtat ggctgttcgc catttaaagt ggtacgcgag ctgggttcag aacgtcgtga
       61 gacagttcgg tccctatctg tcgtgggcgt tggagatttg agaggggctg ctcctagtac
      121 gagaggaccg gagtggacga atctctggtg ttccggttgt cacgccagtg gcattgccgg
      181 gtagctatat tcggaagcga taaccgctga aagcatctaa gcgggaagcg cgcctcaaga
      241 tgagatctcc cggggcacaa gccccctgaa ggaaccatca agaccaggtg gttgataggc
      301 agggtgtgta agcgcagcaa tgcgttgagc taacctgtac taatgatccg tgcggcttga
      361 ccatataacc tcaagtggcc ttggactcga cgacgcgtcg acgttcggac caatgctcgc
      421 tacattccac cccattcgcc gaaggcggaa actccagttt ccaccggacg caaccgagcg
      481 agagcgtgag cgcgaccgga tcctccggcc cgcgaccctc caccctctcc ctggtgataa
      541 tagctgcgtg gtcccacccg atcccattcc gaactcggaa gtgaaacgcg caaacgccga
      601 tggtagtgtg catccgcatg cgagagtagg tcatcgccag ggtctttacc ccaaaaaccc
      661 ccagcctcgg ctgggggttt ttcttttgcc tggcggaaac catgcgtcgg ctcgccggga
      721 accccgcgcg cgcgtcgatc gacttttggg aggggcaggc tgcgggacct gtccgcgggt
      781 cctgcacggc cgccgcgcac gccaaggatc tcaccgcccc acgatgcttg cggggatccg
      841 aaggagggcg gtcgctggcc cagcccgcgg ggacgttcac gcgtcagccg tgcgaccggc
      901 ggacttccga ctcgtggacg caggcacggg gcccgatggt acgtggcccg atggcacgtg
      961 gccctgggtg caggcttcgt cgggcaggga gcctcgcagc cgaccggcgc cgagcggcgg
     1021 atcagcgcag aacgcgtggc gtctggtcgc ccacgatcac gatgtcggcc ggtcgccggg
     1081 cgaacaggcc gacggtgacg acgccgggga tctggttgac cgcggattcc agcgcgagcg
     1141 gatcggtgat cgccagtccg tggaggtcca gcacccagtt gccgttgtcg gtgaccaccc
     1201 cttcgcgcca gaccggctgc ccgccggtga gcgcgaccag ttcgcgcgcg accaggctgc
     1261 gcgccatcgg gatgacctcg accggcagcg ggaagcggcc gagcacgtcg acctgcttgg
     1321 acgggtcgat gatgcacacg aaggtgcggc tggcttcggc gatgatcttc tcgcgggtga
     1381 gcgcggcgcc gccgcccttg atcaggcggc gctgcggatc gcactcgtcg gcgccgtcga
     1441 cgtacagcga cagcggcccg gtgtggttga ggtcgagcac ctcgatgccg tgctggcgca
     1501 ggcgcgcggt gctctgctcg gaactcgaga ccgcgccggc gatgcggtgg cggacgcgtg
     1561 cgagcgcgtc gatgaagaag gccacggtcg aaccggtgcc cacgccgatg atcatgtcgt
     1621 cctcgacgaa ctcgatcgcc ttttcgccgg cgaggcgctt gccttcggac atgctcactc
     1681 cagggacagg atggtcttcc actgcgccgc gctcaccggc agcaccgaca gccggctgcc
     1741 cttgcggatc aacgcgaagt cttcgcccag tacgtcggcc ttggcgcgga tggcgtcgag
     1801 cgacaccggg cgcttcagcg tgcgcgcgta gcgcacgtcg acgaggtccc agcgcggctg
     1861 ctcgcgcgtg gccttctcgt cgtagtactt cgagcggcgg tcgaactggg tcggatccgg
     1921 ataggccgcg cttgccacct cggcgacgcc atacacgccg ggcacctcgg tgttggagtg
     1981 gtagaacagc accccgtcgc cggcctgcat ctggcgcatg aagttgcgcg cctggtagtt
     2041 gcgcacgccg gtccacggct cgacgccgac gcgggcgagg tcgtcgatcg agaaatcgcc
     2101 cggctcggac ttcatcagcc aatggcgggt gcgggggctc atgcggggat ccggtgggtg
     2161 aggaacgcac cgcgttcggt gcacaccgcg tccaggccca cgtcccaggg ctcggcaggc
     2221 agcgcgtcga ggcgctgcag ggcgaagccg gcgccggcca gccagggcgg cgccgcctgc
     2281 gtgcggcgga acgcgaaagt gcgatcgtac cagccgccgc ccatgccgag ccgctggccc
     2341 tccgcgtcga aaccgaccag cggcaccacg accagcgcca tccgctccgg cgcgatcagt
     2401 tcgccgggcg ccaggtccgg ctcggggatg ccgaagcggt tttcgcgcag cggcgagccc
     2461 ggccgccacg gcgcgaagcg caggcagtcg tcgtcgccga gcaccggcag gcagtacgtg
     2521 cagccgggcg ggaggcgcaa ctgccaggcg tgcagggcga tctcgccatc catcgcccag
     2581 tagccggcga cgtgccccgc cgaaggcgcg aacggcagcg cgagcaggcg tgcggccagc
     2641 gcttcggcgg cggcgatgcg ttcggtggcg ggcaatgcgc ggcgcgcggc gcgcagttgc
     2701 cggcgcaggc tggggcgatc ggtcatcgcg tgattttacc ggcgcc
//
LOCUS       DATIQC010000006         1848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_389110, whole genome shotgun sequence.
ACCESSION   DATIQC010000006 DATIQC010000000
VERSION     DATIQC010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389110"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VLM17_00140"
     CDS             <1..257
                     /locus_tag="VLM17_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012337770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HSR64003.1"
                     /translation="RIIGNAPDKAAVVSFLVEWAHAHDLATLLDLEGVAVRSGHHCAH
                     PLMHYYGVPATCRASLAFYNTHEEIEAFIAALRRVRRLLG"
     gene            317..583
                     /locus_tag="VLM17_00145"
     CDS             317..583
                     /locus_tag="VLM17_00145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64004.1"
                     /translation="MSDDIAALLREIRDNQREALQVQREHVRLYTEQLGRVERINDRA
                     EAIQARAGRSVRLVLGVAVPLLVLLILFMLWPYARYYLFLLAHR"
     gene            580..1116
                     /locus_tag="VLM17_00150"
     CDS             580..1116
                     /locus_tag="VLM17_00150"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64005.1"
                     /translation="MTDLHFRAACEDDIPAIVALVESAYRGDASRAGWTTEADLLDGR
                     RTGADDVGACIRRPGSVILLAERACDHGLELLACAHVAGEDRAGYFGMFSVRPTLQGA
                     GIGKALLAEAERLARDAWKLPAMRMTVIDVREELIAFYERRGYRRTGITRPFPYGDER
                     FGLPKRQDLRFEVLEKAF"
     gene            1249..1569
                     /locus_tag="VLM17_00155"
     CDS             1249..1569
                     /locus_tag="VLM17_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014508448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HSR64006.1"
                     /translation="MGDWVRVCTTAELLPGESRVAWDGDTAIVVFNYDGDFYALEDRC
                     SHEDFELSSGPFDAEDATIECVLHGSKFDVRDGRALNPPAYAPVAKFPVRVEDGVVWT
                     RDHR"
BASE COUNT          263 a          638 c          665 g          282 t
ORIGIN      
        1 tgcgcatcat cggcaacgcg ccggacaagg cggcggtggt gtccttcctg gtggagtggg
       61 cccatgcgca cgacctcgcc accctgctcg acctggaagg cgtcgcggtg cgctccggcc
      121 accactgcgc gcacccgctg atgcactact acggggtgcc ggcgacctgc cgcgcttcgc
      181 tggcgttcta caacacgcac gaggaaatcg aggctttcat cgcggcgctg cgcagggtgc
      241 ggcggctgct cggatgagca gcgctgcggc tgcgccggag gcaggctaga ctcgtcgcgc
      301 caccggggaa tccgccatgt ccgacgacat cgccgcgctg ctgcgcgaga tccgcgacaa
      361 ccagcgcgag gcgctgcagg tgcaacgcga gcacgtccgc ctgtacaccg agcaactcgg
      421 ccgggtggag cgcatcaacg accgcgccga ggccatccag gcgcgcgccg gccgcagcgt
      481 ccggctggtg ctgggtgtcg ccgtgccgct gctcgtgctg ctgatcctgt tcatgctgtg
      541 gccctacgcc cgctactacc tcttcctgct cgcgcatcga tgaccgacct gcatttccgc
      601 gccgcctgcg aggacgacat cccggcgatc gtcgccctgg tcgaatccgc ctatcgcggc
      661 gacgccagcc gcgccggctg gaccaccgaa gccgacctgc tcgatggtcg ccgcaccggc
      721 gcggacgacg tcggcgcctg catccgccgc ccgggcagcg tcatcctgct tgccgaacgc
      781 gcatgcgatc acggccttga gctgcttgcc tgcgcgcacg tggccggcga ggaccgcgcg
      841 ggctatttcg gcatgttctc ggtgcgtccg acgctgcagg gcgccggcat cggcaaggcg
      901 ctgctggcgg aagccgagcg cctggcgcgc gacgcctgga aactcccggc gatgcggatg
      961 acggtgatcg acgtgcgcga ggagctcatc gccttctacg agcgccgcgg ctaccgccgg
     1021 accggcatca ccaggccgtt cccctacggg gacgagcgct tcggcctgcc caagcgccag
     1081 gacctgcgct tcgaggtgct cgaaaaggcg ttctgaggcg tgctttgcgt tgcggcgtgc
     1141 ggtttgctgc ttgcggtccg cgatgcgcgg attgccgcat cggtccggga gcgcgggcgt
     1201 gagggacggc ctccagtagg cgatcggcag cggcatggga gcggatggat gggcgactgg
     1261 gtgcgtgtgt gtacgacggc ggaactgctt ccgggcgagt ccagggtcgc ctgggacggg
     1321 gacacggcga tcgtggtgtt caactacgac ggtgatttct acgcgctgga ggaccgctgc
     1381 tcgcacgagg atttcgagct ttccagtggc ccgttcgatg cggaggacgc gaccatcgag
     1441 tgcgtgctgc acgggtcgaa gttcgacgtg cgcgacgggc gcgcgctcaa cccgccggcc
     1501 tacgcgccgg tggccaagtt cccggtgagg gtggaggacg gcgtggtgtg gacgcgggac
     1561 caccgctgag ggcgattgcg gcgcgaacgg cacgcagccc aggggagggt ttccggccgt
     1621 tgcatcgacg tcaggccgcg acggcatggc tcgtcgccgg catagccatc gagcgcccag
     1681 ccgagcgcga agcatgaccc tcccaaccgg acgccgaacc aggccctcaa cggactgccg
     1741 gctgcatcct gatcagcagc gcctccccgg caccgtcgac gacgtggcgc aggcgctccg
     1801 cgcctgcgct gaacaccgcg gtgtccccgg ccgcgaggtc gggcaggc
//
LOCUS       DATIQC010000007         4621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_495044, whole genome shotgun sequence.
ACCESSION   DATIQC010000007 DATIQC010000000
VERSION     DATIQC010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4621
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495044"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..667
                     /gene="rlmB"
                     /locus_tag="VLM17_00160"
     CDS             <1..667
                     /gene="rlmB"
                     /locus_tag="VLM17_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HSR64007.1"
                     /translation="GSKNPRLAEIEGNARRAGIDVRRVAQQALDGVAGGLRHQGAVAR
                     YAAAKTWDENELPQLVEAAAGRALVLVLDGVQDPHNLGACLRSAAAAGVTAVVIPKDK
                     AVPVNATVRKTSAGAADSIPIIRATNLARCMRDLQQLGVWIYGLAGDAGTSLYGIDLR
                     GNVALVLGGEADGLRRLTREQCDQLVMIPMPGAATGQRVESLNVSVATGVALFEVVRQ
                     RQS"
     gene            669..941
                     /locus_tag="VLM17_00165"
     CDS             669..941
                     /locus_tag="VLM17_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007508616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64008.1"
                     /translation="MHGDWAVALAWYDVAGLLGSAMVLVAFFLLQAGRLSGTGLRYQL
                     LNLLGAAGVLLSLFGGFNPAVLVLEGTWMLVSAYGIVRSLRARQAG"
     gene            complement(919..1599)
                     /gene="rnt"
                     /locus_tag="VLM17_00170"
     CDS             complement(919..1599)
                     /gene="rnt"
                     /locus_tag="VLM17_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008572178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016896 - RNA exonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HSR64009.1"
                     /translation="MMQEVLATPQPPRIRRMAERFRGYLPVVVDAETGGFDWNRHALL
                     ELAAIPLELDPAGLLVPGEVACAHFEPAPGMEIDPKSLEVTGIRIDHPFRMAKPEKEA
                     LDHVFAAVRAALRRHDCQRAILVGHNAHFDLNFLNAAVARTGHKRNPFHPFSVFDTVS
                     LAGVAYGQTVLGRAMQAAGLAWNSDEAHSAVYDAERTAELFCKIANAWSGGMATPGAD
                     ALSPPGAP"
     gene            complement(1650..2360)
                     /gene="phoU"
                     /locus_tag="VLM17_00175"
     CDS             complement(1650..2360)
                     /gene="phoU"
                     /locus_tag="VLM17_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HSR64010.1"
                     /translation="MITQPHDHIVRSFDEEQQRLMKDLLRMGGMAAAQLEAALDVIER
                     RDDRAADRIVANDEAIDALEHEVSHDVMKLALRGPLARDLREILAALRIASDIERIGD
                     YAANLAKRSRVLNLAPPLPHTRGLDALGRLAVQQVRDVLAAYQARDAAAAQRVRNRDA
                     ELDTLHTSLFRELLTYMMEDARAITPCTHLLFMAKNLERIGDHATNIAENVWFLVHGE
                     GLLPPREKRDEAGLAPPP"
     gene            complement(2389..3186)
                     /gene="pstB"
                     /locus_tag="VLM17_00180"
     CDS             complement(2389..3186)
                     /gene="pstB"
                     /locus_tag="VLM17_00180"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007966219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HSR64011.1"
                     /translation="MNDAREATRDAVEAPAAKLVARGVDFHYDRFHAVHDVSLDIPEH
                     RVTALIGPSGCGKSTLLRVFNRIYSLYPKQRASGEVMLDGENILDPRYPLNRLRTKVG
                     MVFQKPVPFPMTIHENVAYGIRHHERLSKADMDARVEQALRQSALWDEVKDKLKANAL
                     GLSGGQQQRLCIARAIALRPEVLLLDEPTSALDPISTSRIEQLIDELKRDFTIVIVTH
                     NMQQAARLSDYTAFMYLGDLVEHGPTDVLFSNPSKQQTEDYITGRFG"
     gene            complement(3206..4057)
                     /gene="pstA"
                     /locus_tag="VLM17_00185"
     CDS             complement(3206..4057)
                     /gene="pstA"
                     /locus_tag="VLM17_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003487152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HSR64012.1"
                     /translation="MARPLYALRSAKNILAHVLALLATAFGLFWLVWILWTTLRQGMS
                     ALDLHLFTSMTPPPGESGGLLNAFVGSALMSLLGILLGAPVGILAGTYLAEYSNRAWI
                     GETVRFVNDILLSAPSIVLGLFVYALVVAPMGHFSALAGAISLAVIVLPVVVRTTDEM
                     LRLVPVQMREAALSLGVPQWKVTLQVLYRSALPGILTGVLLALARISGETAPLLFTAL
                     NNQYWSTDLLQPMANVPVVIFQFAMSPYDSWHSLAWAGALVLTLFVLVVGLTARAIVA
                     RTRITHD"
     gene            complement(4059..>4621)
                     /locus_tag="VLM17_00190"
     CDS             complement(4059..>4621)
                     /locus_tag="VLM17_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HSR64013.1"
                     /translation="LFVLVPQLSEHVFPWIDAHLGQWPLVGPLFSGPPLGLGMLTAGL
                     VLAIMIVPFIASVMREVFLTVPSRLKESAYALGSTRWEVVWDVVLPSTRSAVIGGIFL
                     GLGRALGETMAVTFVLGNAHDLTASLLMPGNSIAATIANEFAEADSPMYRSSLVALGF
                     VLFLVTLVVLAIARLMLRRLARREGR"
BASE COUNT          739 a         1534 c         1658 g          690 t
ORIGIN      
        1 gggttcgaag aacccgcgcc tggccgagat cgaaggcaat gcccgccggg ccggcatcga
       61 cgtgcggcgc gtggcgcagc aggcgctgga cggcgtcgcc ggtggactgc gccaccaggg
      121 cgccgtggcg cgctacgccg ccgcgaagac ctgggacgaa aacgagctgc cgcagctggt
      181 cgaggcggcc gcgggtcgcg cgctggtgct ggtgctcgac ggcgtgcagg acccgcacaa
      241 cctcggcgcc tgcctgcgca gcgcggccgc ggccggcgtc accgccgtgg tcatcccgaa
      301 ggacaaggcc gtgccggtga acgcgacggt gcgcaagacc tcagccggcg cggccgacag
      361 catcccgatc atccgcgcga ccaacctcgc gcgctgcatg cgcgacctgc agcagctcgg
      421 cgtgtggatc tacggcctgg ccggcgacgc gggcacgtcc ctgtacggaa tcgacctgcg
      481 cggcaacgtc gcgctggtgc tcggcggcga ggccgacggc ctgcgcaggc tcacccgcga
      541 acagtgcgac cagctggtga tgatcccgat gccgggcgcg gccaccgggc agcgcgtgga
      601 aagcctcaac gtctcggtgg cgaccggcgt ggcgctgttc gaggtcgtgc gccagcggca
      661 atcctgacat gcacggggac tgggccgtcg cgctcgcgtg gtacgacgtc gccggcctgc
      721 tcggcagcgc gatggtgctc gtcgcgttct tcctgcttca ggccgggcgg ctgtcgggta
      781 ctgggctgcg ttaccagctg ctcaacctgc tgggggccgc cggcgtgctg ctgtcgctgt
      841 tcgggggctt caatcccgcg gtcctcgtgc tcgaaggcac gtggatgctg gtcagcgcat
      901 acgggatcgt gcgttcgctc agggcgcgcc aggcgggctg agcgcgtcgg ctccgggcgt
      961 ggccattccg cccgaccacg cgttggcgat cttgcagaac agttccgccg tgcgctccgc
     1021 gtcgtacacc gccgagtgcg cttcgtcgct gttccacgcc aggccggcgg cctgcatcgc
     1081 gcgaccgagc acggtctgcc cgtaggcgac gcccgccagg ctcacggtgt cgaacacgct
     1141 gaacgggtgg aacgggttgc gcttgtgccc ggtgcgcgcg accgccgcgt tgaggaagtt
     1201 gaggtcgaag tgggcgttgt ggcccaccag gatcgcgcgc tggcagtcgt gccggcgcag
     1261 cgcggcgcgc accgccgcga acacgtggtc gagcgcctcc ttctccggct tggccatgcg
     1321 gaagggatgg tcgatgcgga tgccggtgac ttccagcgac ttcggatcga tttccatgcc
     1381 gggcgccggc tcgaaatgcg cgcaggcgac ttcgccaggc accagcaggc cggcggggtc
     1441 gagctcgagc gggatcgcgg ccagttccag caacgcgtga cggttccagt cgaagccgcc
     1501 ggtttccgcg tcgaccacca ccggcaggta gccgcggaaa cgttcggcca tgcggcggat
     1561 gcgcggcggc tgtggcgtgg cgaggacttc ctgcatcatg cggacagggt agcagagcgt
     1621 ccgcgccgcg ccgccgccgc gacgatgcgt cagggcgggg gcgccagccc cgcctcgtcg
     1681 cgtttctcgc gcggcggcag caggccttcg ccgtgcacca ggaaccagac gttctcggcg
     1741 atgttggtcg cgtggtcgcc gatccgctcg aggttcttgg ccatgaacag caggtgcgtg
     1801 cacggcgtga tcgcgcgcgc atcctccatc atgtaggtga gcagttcgcg gaagaggctg
     1861 gtgtgcaacg tgtcgagttc ggcatcgcgg ttgcgcaccc gttgcgccgc ggcggcatcg
     1921 cgggcctggt aggcggccag cacatcgcgc acctgttgca cggcgaggcg gccgagcgcg
     1981 tccagcccgc gggtgtgcgg aaggggcggg gccaggttca gcacgcggga gcgtttcgcg
     2041 agattggccg cgtagtcgcc gatgcgctcg atgtcggacg cgatccgaag cgccgccagg
     2101 atctcgcgca ggtcccgcgc gagcggtccg cggagcgcga gtttcatcac gtcatggctg
     2161 acctcgtgct cgagcgcatc gatggcctcg tcgttggcca cgatgcggtc ggccgcgcgg
     2221 tcgtcgcggc gttcgatgac gtcgagcgcg gcttcgagct gggcggccgc catcccgccc
     2281 atgcgcagca ggtccttcat gaggcgctgc tgttcctcgt cgaagctccg gacgatgtgg
     2341 tcgtggggtt gggtgatcat gaattgctcc attggttggc gcagcccttc aaccgaaccg
     2401 tccggtgatg taatcctcgg tctgctgctt cgaggggttc gagaagagca cgtcggtcgg
     2461 cccatgctcg accaggtcgc cgaggtacat gaaagcggtg tagtccgaca ggcgcgccgc
     2521 ctgctgcatg ttgtgcgtca cgatgacgat ggtgaagtca cgcttcagct cgtcgatcaa
     2581 ctgctcgatg cggctggtgg aaatcgggtc cagcgccgag gttggttcgt cgagcagcag
     2641 cacttccggc cgcagcgcga tcgcgcgcgc gatgcacaaa cgctgctgct ggccgccgga
     2701 caggcccagg gcgttcgcct tcagcttgtc cttcacctcg tcccacagcg cggactggcg
     2761 cagggcctgc tcgacgcgcg cgtccatgtc cgccttcgac aggcgctcgt ggtggcggat
     2821 gccataggcc acgttctcgt ggatcgtcat cgggaacggc accggcttct ggaacaccat
     2881 gccgaccttg gtgcgaaggc ggttgagcgg atagcgcgga tcgaggatgt tctcgccgtc
     2941 gagcatcacc tcgccgctgg cgcgctgctt cggatacagc gaatagatgc ggttgaagac
     3001 gcgcagcagc gtcgacttgc cgcagccgga ggggccgatc agcgcggtca cgcggtgttc
     3061 ggggatgtcg agcgacacgt catggacggc atggaagcgg tcgtagtgga agtccacgcc
     3121 gcgcgcgacc agtttggccg ccggcgcctc gacggcgtcg cgggtggctt cacgggcgtc
     3181 gttcatggcc ggcatcctgg aaaaatcagt catgggtgat ccgcgtgcgg gcgacgatgg
     3241 cgcgagccgt caggcccacg acgaggacga agagggtgag gaccaacgcg ccggcccacg
     3301 ccaggctgtg ccagctgtcg tacggactca tggcgaactg gaagatcacc accggcacgt
     3361 tcgccatggg ctgcagcagg tcggtggacc agtactggtt gttgagcgcg gtgaacagca
     3421 gcggcgcggt ctcgcccgaa atgcgcgcca gcgccagcag cacgccggtg aggatgcccg
     3481 gcagcgcgga gcggtacagc acctgcaatg tcaccttcca ctgcggcacg cccagggaaa
     3541 gcgccgcctc gcgcatctgc acgggcacca gccgcagcat ctcgtccgtg gttctgacca
     3601 ccaccggaag cacgatcacc gcgagggaga tcgcgcccgc gagagcggag aaatggccca
     3661 tcggcgccac caccagcgcg tacacgaaca ggccgagcac gatcgacgga gccgacagca
     3721 ggatgtcgtt gacgaagcgc accgtctcgc cgatccacgc gcggttcgaa tactcggcga
     3781 ggtaggtgcc ggcgaggatg ccgaccggcg caccgagcag gatgcccagc aggctcatca
     3841 gcgcgctgcc gacgaaggcg ttgagcaggc cgccgctttc gcccggcggc ggcgtcatgc
     3901 tggtgaacag gtgcaggtcc agcgccgaca tgccctggcg aagcgtggtc cacaggatcc
     3961 agaccagcca gaacaggccg aacgccgtcg ccagcagggc gaggacgtgg gccaggatgt
     4021 tcttcgccga tcgcaacgca tacagcggac gtgccatctc agcggccctc ccgcctggcc
     4081 agacgacgca gcatcagccg cgcgatcgcg aggacgacca gcgtcaccag gaagagcacg
     4141 aagcccagcg ccaccagcga ggaccggtac atcggcgagt cggcttccgc gaattcgttg
     4201 gcgatggtgg ccgcgatcga attgcccggc atcagcagcg acgccgtcag gtcgtgcgcg
     4261 ttgcccagga cgaaggtcac ggccatcgtc tcgccgagcg cgcggcccag gcccaggaag
     4321 atgccgccga tcaccgccga gcgcgtcgag ggcagcacca cgtcccagac gacctcccag
     4381 cgcgtcgaac cgagcgcata ggccgattcc ttcaagcgcg acggcaccgt caagaagact
     4441 tcgcgcatca ccgaagcgat gaacggaacg atcatgatcg ccagcaccag gcccgcggtg
     4501 agcatgccga ggccgagcgg cggtcccgag aacaacgggc ccaccagcgg ccattggccg
     4561 aggtgcgcgt cgatccaggg gaacacgtgc tcggacaact gcggcaccag cacgaacagg
     4621 c
//
LOCUS       DATIQC010000008         4705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_212467, whole genome shotgun sequence.
ACCESSION   DATIQC010000008 DATIQC010000000
VERSION     DATIQC010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212467"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1999
                     /locus_tag="VLM17_00195"
     CDS             <1..1999
                     /locus_tag="VLM17_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR64014.1"
                     /translation="GQLIAEFDARAHGRVPEPQADAAPVPAPKVELKPLSAPISDAPF
                     GEEEDVSVRAPQEQVRIRADLLDRLVNYAGEVAIYRARLEQQLGAFRGAMVEMEQTNT
                     RLRDQLRRLDSETEAQIIARYQRESEAGDETFDPLELDRFSNLQQLSRGLAESAADLT
                     SLQGSLDDLTRQYETLLLQQSRVSSELQEGLMRTRMVPFDALVPRLRRVLRQAASDTG
                     KQVQLKVEGAQGELDRNVLERMTAPLEHMLRNAVAHGLESPEQRRKAKKGEEGTVRIA
                     VRREGSEMVLEVGDDGAGLDRKAIHKRALERGLIRSDARLADSDLDALIFEPGFSTAT
                     EVSRLAGRGVGMDVVASEVRQLGGALDIRSKQGEGTSFTIRLPQTLAVTQAVFVRIGE
                     TNFAVPIASVRGVGRIPRADLEKGDATYRYGGEDYAIHDLGVLLGQGRAKAEGQLQMP
                     VLLIRSGDLRAAVTIDQVVGNREIVVKPVGPQVASIPGIFGATIMGDGRVVVLLDVAP
                     LVRRQAALPRDHVAAAAPAVDTRKVPLVMVVDDSVTMRKVTGRVLERNNFEVATAKDG
                     LDALERMADVVPDLMLLDIEMPRMDGYELATAMKGDPRLRNVPIIMITSRTGEKHRQR
                     AFEIGVQRYLGKPYQEHELMRNVFELLAETEAERDGSVVHG"
     gene            1992..3356
                     /locus_tag="VLM17_00200"
     CDS             1992..3356
                     /locus_tag="VLM17_00200"
                     /inference="COORDINATES: protein motif:HMM:NF013502.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HSR64015.1"
                     /translation="MAEAKRVALLARPGNARERLQAALQEAGAELVLVADPTATDVEG
                     LRAAGAQAVLVALEPQVEDALDRFDAVLGDPAITVIFDEAELAAQREGWDAARWVRHL
                     AAKLGNREDVLPPGFQPDEVSAIESRLEADAPPPVQYRHADTDLDLSAFTTEALALAD
                     AVPHDAIEAPGADPAHDIRLGTLALTDDLGEAVPDLGDFSFDLDLSALDTASVAPPQP
                     DPGPLSLDPIEPLEPASGQAAPAPQPAAEPVEDAGANDRFRRDLADLEARIAGMELVD
                     TPRAKPARDHGLVLVLAGIGGPDAVRQLLGGLPANFPRAVLIQQRLDGARHDKLVRQM
                     QRATALPVALAEDGMAVEVGHVYVLPAELGLAEGGGRFGGGADALLAHLPAADSAIVL
                     LSGSDPAVVDAAMAHALRGALVVGQAPDGCYDPAAPAALIARGADSGAPPALAKKLAA
                     RWAA"
     gene            3366..3839
                     /locus_tag="VLM17_00205"
     CDS             3366..3839
                     /locus_tag="VLM17_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003482475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSR64016.1"
                     /translation="MSTASHDIRGVLIQVAGARLLLPNATIAEVLSYAEPDAIGNAPH
                     WLLGRIRWRGWQLPLVSFARLSGIAEEQGGLGSKVVILKALGGDTRQPYFALLTQGFP
                     RLVTVSQDALRAEESDPTQLPPGIQARVVLNEDAAVLPDLAQIEQLIGSALAQAA"
     gene            complement(3942..4673)
                     /locus_tag="VLM17_00210"
     CDS             complement(3942..4673)
                     /locus_tag="VLM17_00210"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005931477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HSR64017.1"
                     /translation="MRVIRAFVDRPLAVGGSVVLPDDAAAHLVRVLRLREGDGCVLFN
                     GDGCDYAATLEAAGKREVRVRIDACAAVDNESPLRITLLQGIARGEKMDWILQKAAEL
                     GVAAFVPVASERSEVRLDAERADKRLAHWRSVVRSACEQSGRAVVPAVSAPQSLAAAL
                     AALPTGARFLLDPVADAAIGTLQLQDGACVLAIGPEGGWSPRDREQLTSAGFAGLRLG
                     PRILRTETAGLAAIAALQAGFGDYR"
BASE COUNT          660 a         1755 c         1701 g          589 t
ORIGIN      
        1 cgggcagctg atcgccgagt tcgacgcccg cgcccatggc cgcgtgcccg agccgcaggc
       61 cgacgcggca ccggtgccgg cgccgaaggt cgagctcaag ccgctgtcgg cgccgatcag
      121 cgacgcgccg ttcggcgagg aagaagacgt ttcggtgcgc gcgccgcagg agcaggtgcg
      181 catccgcgcc gacctgctcg accgcctcgt caactacgcg ggcgaggtcg cgatctaccg
      241 cgcccgcctc gagcagcagc tcggcgcgtt ccgcggcgcg atggtggaaa tggagcagac
      301 caacacgcgt ctgcgcgacc agctccgccg cctcgacagc gagaccgagg cgcagatcat
      361 cgcccgctac cagcgcgaga gcgaggccgg cgacgagacc ttcgatccgc tcgagctcga
      421 ccgcttctcc aacctgcagc agctctcgcg cggcctcgcc gagtccgcgg ccgacctgac
      481 ctcgctgcag ggctcgctcg acgacctcac ccgccagtac gaaacgctgc tgctgcagca
      541 gtcgcgcgtc agctcggaac tgcaggaagg cctcatgcgc acgcgcatgg tgccgttcga
      601 cgcgctggtg ccgcgcctgc gccgcgtgct gcgccaggcc gccagcgata ccggcaagca
      661 ggtgcagctg aaggtcgagg gcgcgcaggg cgaactcgac cgcaacgtgc tggagcgcat
      721 gaccgcgccg ctggagcaca tgctccgcaa cgcggtcgcg catggcctcg agtcgcccga
      781 acagcgccgc aaggcgaaga agggcgagga aggcaccgtc cgcatcgcgg tccgccgcga
      841 aggctcggaa atggtgctgg aggtcggcga cgacggcgcc gggctggacc gcaaggccat
      901 ccacaagcgc gcgctcgagc gcggcctgat ccgcagcgac gcgcgcctgg ccgacagcga
      961 cctcgacgcg ctgatcttcg agccgggatt ctcgacggcg accgaggtca gccgcctcgc
     1021 cggccgcggc gtcggcatgg acgtggtggc gagcgaagtc cgccagctcg gcggcgcgct
     1081 cgacatccgc tcgaagcagg gcgaaggcac cagcttcacg atccgcctgc cgcagacgct
     1141 ggcggtcacc caggcggtgt tcgtgcgcat cggcgagacc aacttcgcgg tgccgatcgc
     1201 gtcggtgcgc ggcgtcggcc gcattccgcg cgcggacctg gaaaagggcg acgcgaccta
     1261 ccgatacggc ggcgaggact acgccatcca cgacctcggc gtgctgctcg gccagggccg
     1321 cgcgaaggcc gaaggccagc tgcagatgcc ggtgctgctg atccgctcgg gcgacctgcg
     1381 cgcggcggtc accatcgacc aggtggtcgg caaccgcgaa atcgtggtca agccggtcgg
     1441 cccgcaggtg gcctcgatcc cgggcatctt cggcgcgacc atcatgggtg acggccgcgt
     1501 ggtcgtgctc ctcgacgtcg ccccgctggt gcgccgccag gccgcgctgc cgcgcgacca
     1561 cgtggccgcg gcggcgccgg cggtcgacac ccgcaaggtg ccgctggtga tggtggtcga
     1621 cgactcggtg acgatgcgca aggtcaccgg ccgcgtgctg gagcgcaaca acttcgaggt
     1681 ggcgaccgcg aaggacggcc tggacgcgct cgagcgcatg gccgatgtcg tccccgacct
     1741 gatgctgctc gacatcgaga tgccgcgcat ggacggctac gagctggcga cggcgatgaa
     1801 gggcgacccg cgcctgcgca acgtgccgat catcatgatc acctcgcgca ccggcgagaa
     1861 gcatcgccag cgcgcgttcg agatcggcgt gcagcgctac ctcggcaagc cgtaccagga
     1921 acacgagctg atgcgcaacg tgttcgagct gctggccgaa accgaggccg aacgcgatgg
     1981 cagcgtcgtc catggctgag gccaagcgcg tcgccctgct ggcgcggccc ggcaacgccc
     2041 gcgagcggct gcaggccgcg ctgcaggagg ccggcgccga gctggtgctg gtcgccgatc
     2101 ccaccgcgac cgacgtcgag ggcctgcgcg ccgccggcgc gcaggcggtg ctggtcgcgc
     2161 tcgagccgca ggtggaggac gcactggacc gcttcgacgc ggtcctgggc gaccccgcga
     2221 tcaccgtgat cttcgacgag gccgaactcg ccgcgcagcg cgagggctgg gacgcggcgc
     2281 gctgggtgcg ccacctcgcc gccaagctgg gcaaccgcga ggacgtgctg ccgcccggtt
     2341 tccagcccga tgaggtgtcg gcgatcgaga gccgcctcga agccgacgcc ccgccgccgg
     2401 tgcagtaccg ccacgccgac accgacctcg acctgtccgc cttcaccacc gaggcgctgg
     2461 ccctcgccga cgcggtgccg cacgatgcga tcgaggcgcc cggcgccgat ccggcgcacg
     2521 acatccgctt gggcacgctg gcgctcaccg acgatctcgg cgaggcggtg cccgacctcg
     2581 gcgatttcag cttcgacctc gacctgtcgg cgttggacac tgcgtccgtc gcgccgccac
     2641 agcccgaccc ggggccgctg tcgctggacc cgatcgaacc gctcgagccc gcgtccgggc
     2701 aggcggctcc ggcgccgcag ccggccgcgg aaccggtcga ggatgccggc gccaacgacc
     2761 gcttccgtcg cgatctcgcc gatctcgagg cgcgcatcgc cgggatggag ctggtcgaca
     2821 cgccccgcgc gaagccggcc cgcgaccacg gcctggtgct ggtgctcgcc ggcatcggcg
     2881 gcccggacgc ggtgcgccag ctgctgggcg gcctgccggc gaatttcccg cgcgcggtgc
     2941 tgatccagca gcgcctggac ggcgcgcgcc acgacaagct cgtgcggcag atgcagcgcg
     3001 cgaccgcgct gccggtcgcg ctcgccgagg acggcatggc ggtcgaggtg ggccatgtct
     3061 acgtgctgcc ggccgaactc gggctggccg aaggcggcgg ccgcttcggc ggcggcgccg
     3121 acgcgctgct cgcccacctg cccgcggccg acagcgcgat cgtcctgctc agcggcagcg
     3181 acccggcggt ggtcgacgcg gcgatggcgc atgccctgcg gggcgcgctg gtcgtcggcc
     3241 aggccccgga cggctgctac gacccggccg cgccggctgc actgatcgcg cggggtgccg
     3301 acagcggcgc gccgccggcg ctcgccaaga agctcgccgc ccgctgggcg gcctgaggaa
     3361 accccatgtc cactgccagc cacgacatcc gcggcgtgct catccaggtg gcgggcgcgc
     3421 gcctgctgct gcccaacgcc accatcgccg aggtgctgtc ctacgccgag ccggacgcga
     3481 tcggcaacgc gccccactgg ctgctcggcc gcatccgctg gcgcggctgg cagctgccgc
     3541 tggtgagctt cgcccgcctg tccggcatcg ccgaggaaca gggcggactg ggcagcaagg
     3601 tggtcatcct gaaggcgctc ggcggcgaca cccgccaacc gtacttcgcc ctgctgaccc
     3661 agggcttccc gcgcctggtc acggtgtcgc aggacgccct gcgtgccgag gagagcgacc
     3721 cgacccagct gccgccgggc atccaggccc gcgtcgtcct caacgaggat gcggcggtgc
     3781 tgcccgacct tgcgcagatc gagcagctga tcggcagcgc gctcgcgcag gcggcctgag
     3841 gccacgcgta ccacgatcgt cccgcagcgg tcgttcgacc tggtgcttgt cgtcgttccc
     3901 gcgggggcaa ggtccgggcg cgtcgcggcc ggacggctgg gtcagcggta gtccccgaaa
     3961 cccgcctgca gcgccgcgat cgcggcgagt cccgccgttt cggtgcgcag gatgcgcggc
     4021 cccaggcgca ggccggcgaa accggcgctg gtgagctgct cgcggtcgcg tggcgaccag
     4081 ccgccttccg ggccgatcgc cagcacgcag gcgccgtcct gcagctgcag cgtcccgatc
     4141 gcggcgtcgg cgaccggatc gagcaggaac ctcgcgccgg tcggcaatgc cgcgagcgcg
     4201 gcggccagcg actgcggcgc cgagaccgcc ggcaccacgg cgcggccgct ctgttcgcac
     4261 gccgagcgca ccacgctgcg ccagtgcgcg aggcgcttgt ccgcgcgttc ggcgtcgagg
     4321 cgcacttcgc tgcgctcgct ggccacgggc acgaacgcgg ccacgccgag ctcggcggcc
     4381 ttctgcagta tccagtccat cttctcgccg cgcgcgatgc cctgcagcag ggtgatgcgc
     4441 agcggtgatt cgttgtcgac ggccgcgcag gcgtcgatgc gaacgcgcac ctcgcgcttg
     4501 ccggcggctt ccagcgtcgc ggcgtagtcg catccgtcgc cgttgaacag cacgcagccg
     4561 tcgccttcgc gcagccgcag cacgcgcacc aggtgcgccg ccgcgtcgtc cggcaggacg
     4621 acggagccgc ccaccgcgag cggacggtcg acgaaggcgc ggatcacgcg cattccgtgg
     4681 cctcgacgat cgcctcgcgg gtggc
//
LOCUS       DATIQC010000009         4860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_459844, whole genome shotgun sequence.
ACCESSION   DATIQC010000009 DATIQC010000000
VERSION     DATIQC010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459844"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..536
                     /locus_tag="VLM17_00215"
     CDS             <1..536
                     /locus_tag="VLM17_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter associated domain-containing
                     protein"
                     /protein_id="HSR64018.1"
                     /translation="LVGGIGQANFDLAHLIDGRELRPAVFVSESTHALKLLEIFREEQ
                     QSLALVVDEYGDVTGMVTLNDLMGAVIGRVQSGENADAEALVVARDDGSLLVDGSLPV
                     DDMRELLGGGALPHEDEHDYHTAAGMTIAWFGRIPNTGEHFDWDGWRVEVVDLDGPRV
                     DKLLVQRLPAGEEPDGG"
     gene            526..1134
                     /locus_tag="VLM17_00220"
     CDS             526..1134
                     /locus_tag="VLM17_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis protein"
                     /protein_id="HSR64019.1"
                     /translation="MAAEAGIRALLGALAEGDPDEVLPLGGMLHGLGRRAFGMLLLVA
                     ALPAFIPIPGGGAIGGPLAVLVGLQLLAGRGEPWLPRVLARRGPHRGALARFARKAER
                     PLGWLETVVRPRLPQVLHYRAAAMLSGLLLVAIGLLLSLPIPLTNYLFGGLLLVFALA
                     LLERDGALLLVGWIAGGASVTGALLLSGNLASRATAWVNALF"
     gene            complement(1131..3254)
                     /locus_tag="VLM17_00225"
     CDS             complement(1131..3254)
                     /locus_tag="VLM17_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017168504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR64020.1"
                     /translation="MRGLHARFFAVVAATLLLMLAIVLLMLQRQGAMQREVLAQSRQA
                     MHGLVFERLRRHGEAQVSQLAGALANPLYYFDLDTIGTIARDAMHEPDVRYVLVFDGN
                     GDILHDGSGDVPPFGQAMRDPLAYEAFSARELHVQWTGHVLDVASPIRVGDQRLGGVR
                     VGYSLDPIRDDEAAATHALDARLGEIGQRHLLWIGLLLAALVALGAITGLALQRTLVR
                     PIRQLADAARAIEGGNFGAAVPTSRRGDELGDLMRAFGRMGASIARHDRDIRRMAYTD
                     ALTGLANRLAFRENLDQRLMQLRGAGRQLALLFCDIDDFKRVNDTLGHEAGDEVLVQF
                     ANRIRAAVEQYGADESLIARFGGDEFVILLQSGAAPGAEVRALASELAAVLVDALSRP
                     ILVQGRQVFLGTSIGVTLFPEDAAGGTMLLKNADIAMYQAKVAGKGCYRFYSRAMDQA
                     VERRVRMEQDLRGAWERGELSLAYQPVFRLADGQLVGAEALLRWRHPEQGVVAPSVFI
                     DVAEQSGLIETIGPQALRAACVEAMEWYARRGRGEGLFVSVNVSPRQLRSGVLPEQVA
                     AGMRDSGLPAGLLHLELTETAVIGDELHASAMLSKLRSTGVKVWLDDFGTGFSGLSHL
                     RRVPVDGVKIDRSFVADVLRDPDDLALTTAIIAMAHSLGITVIAEGVEQEGQYNILRE
                     RGCDLAQGYWLGHPLAPDDFAALLA"
     gene            complement(3269..4195)
                     /locus_tag="VLM17_00230"
     CDS             complement(3269..4195)
                     /locus_tag="VLM17_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008265049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate/phosphite/phosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HSR64021.1"
                     /translation="MRQFLSCLLCGVLALAPGARAAEPQPAGDPHVLVMGAVSDDPAG
                     DYGRLKPLLEYAVARMEGVGIREGRILMARDVRQMASYLRRGRVDWVTGSAATGVRLQ
                     MQGGAQPLLLDERDGASRYHAVVFVRSDSRVRRLEDLRGGSIAFADGSSTAAYYMPAL
                     RLLDRQLPLQLLASPLDRPGAGAVGYVFARSQANIAAWVHRGLVEAGTASDADWDNPQ
                     SMPPGFRDGFVVVDRSPEYPRALEVVRGDLAAGVRDRLREVLLQAGTDPDAREPLLEF
                     ARTTRFLPIDADAESGLGRVREGVERVRAEVE"
     gene            complement(4273..>4860)
                     /locus_tag="VLM17_00235"
     CDS             complement(4273..>4860)
                     /locus_tag="VLM17_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003475316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HSR64022.1"
                     /translation="ADVLAAATVHADLAQAVADCQLVYGCTARSRRIALDEYAPRAAA
                     ARLLDAAREGAEVAFVFGRERTGLTNEELQLCHAAVHIPANPDYSSLNLAQAVQVLAY
                     ELRMAMLEAPARVVDGHREAPASHAQLESFFAQLADTLDAIDFHKGRAPDAAMHKLRR
                     IFLRAALDEREVRILRGVLADAQRMARLAAERGAG"
BASE COUNT          640 a         1805 c         1761 g          654 t
ORIGIN      
        1 cgctggtcgg cggcatcggc caggccaact tcgacctggc ccacctgatc gacgggcgcg
       61 agctgcgccc cgcggtgttc gtgtccgagt ccacgcacgc gctcaagctg ctggagatct
      121 tccgcgagga gcagcagtcg ctggcgctgg tggtcgacga atacggcgac gtcaccggca
      181 tggtgacgct caacgacctg atgggcgcgg tgatcggccg cgtgcagtcg ggcgagaacg
      241 ccgatgcgga ggcgctggtg gtggcgcgcg acgacggctc gctgctggtc gacggatcgc
      301 tgccggtgga cgacatgcgc gaactgctcg gcggcggcgc gctgccgcac gaggacgagc
      361 acgactacca caccgccgcc ggcatgacga tcgcctggtt cggccgcatc cccaacaccg
      421 gcgagcactt cgactgggac ggctggcgcg tcgaggtggt cgacctcgat gggccgcgcg
      481 tggacaagtt gctggtgcag cggctgcccg cgggcgagga acccgatggc ggctgaggcc
      541 ggcatccgcg cgctgctcgg cgcgttggcc gagggcgatc ccgacgaggt gctgccgctg
      601 ggcgggatgc tccacgggct cggccggcgg gccttcggca tgctgctgct ggtcgccgcc
      661 ctgcccgcct tcatcccgat ccccggcggc ggcgcgatcg gcggcccgct ggccgtgctg
      721 gtcggcctgc agctgctggc cggccgcggc gagccctggc tgccacgcgt gctggcgcgg
      781 cgcggaccgc atcgcggcgc gctggcgcgc ttcgcgcgca aggccgaacg cccgctcggc
      841 tggctggaaa ccgtggtgcg cccgcggctg ccgcaggtgc tgcactaccg cgccgcggcg
      901 atgctcagcg gcctgttgct ggtggcgatc ggcctgctgc tgtcgttgcc catccctctc
      961 accaactacc tgttcggcgg cctgctgctg gtgttcgccc tggccctgct cgaacgcgac
     1021 ggcgccctgc tgctggtggg atggatcgcc ggtggcgcgt cggtgacggg cgcgctgctg
     1081 ctgtcgggca acctggcctc gcgcgcgacg gcctgggtga acgcgctgtt ctaggccagc
     1141 agcgcggcga agtcgtcggg cgcgagcggg tggccgagcc agtagccctg cgccaggtcg
     1201 cagccgcgct cgcgcaggat gttgtactgg ccttcctgct cgacgccttc ggcgatcacg
     1261 gtgatgccca gcgaatgcgc catcgcgatg atcgcggtcg tgagcgcgag gtcgtccgga
     1321 tcgcgcagca cgtcggccac gaagctgcgg tcgatcttga cgccgtcgac cggcacccgg
     1381 cgcaggtggc tcaggcccga gaagccggtg ccgaaatcgt ccagccagac cttgacgccg
     1441 gtgctgcgca gcttggacag catcgcgctg gcgtgcagtt cgtcgccgat caccgcggtc
     1501 tcggtcagct ccaggtgcag caggccggcc ggcaggccgc tgtcgcgcat cccggccgcg
     1561 acctgctccg gcagcacgcc gctgcgcagc tggcgcggcg atacgttcac cgacacgaac
     1621 aggccctcgc cgcgcccgcg ccgcgcgtac cactccatcg cctccacgca ggccgcgcgc
     1681 agcgcctgcg gaccgatcgt ctcgatcagg ccgctctgtt cggcgacgtc gatgaagacc
     1741 gacggcgcga ccaccccctg ctccgggtgc cgccagcgca gcagcgcctc ggcgccgacc
     1801 agctggccgt cggcgagccg gaacaccggc tggtacgcga ggctgagctc gccccgctcc
     1861 cacgccccgc gcaggtcctg ctccatgcgc acgcgccgct cgaccgcctg gtccatcgcc
     1921 cggctgtaga agcggtagca gcccttgccc gcgaccttcg cctggtacat cgcgatgtcg
     1981 gcgttcttca gcagcatcgt gccgccggcg gcgtcctcgg ggaacagggt tacgccgatc
     2041 gaggtgccga ggaacacctg ccgcccctgc accaggatcg gccgcgacag cgcatcgacg
     2101 agcacggccg ccagctcgct ggccagcgcg cgcacctcgg ctcccggcgc cgcgccggac
     2161 tgcagcagga tcacgaattc gtcgccgccg aaccgcgcga tcaggctctc gtcggcacca
     2221 tactgctcca ccgcggcgcg gatgcggttg gcgaactgga ccagcacctc gtcgcccgct
     2281 tcgtggccga gcgtgtcgtt gacgcgcttg aagtcgtcga tgtcgcagaa cagcagcgcc
     2341 agctggcggc cggcgccacg cagctgcatc agccgctggt cgaggttctc gcggaacgcc
     2401 agccggttgg cgaggccggt gagcgcgtcg gtgtacgcca tccggcggat gtcgcggtcg
     2461 tggcgggcga tgctcgcgcc catgcggccg aacgcgcgca tcaggtcgcc cagttcgtcc
     2521 ccgcggcggc tggtcggcac cgccgcgccg aagttgccgc cctcgatcgc gcgcgcggcg
     2581 tcggccagct ggcggatcgg ccgcaccagg gtccgctgca gggccagccc cgtgatcgcg
     2641 cccagcgcca ccagcgccgc gagcagcagg ccgatccaca gcaggtggcg ttggccgatc
     2701 tcgcccaggc gcgcgtcgag cgcgtgcgtc gccgccgcct cgtcgtcgcg gatcggatcg
     2761 agcgaatagc ccacgcgcac gccgcccagg cgctggtcgc cgacacggat ggggctcgcc
     2821 acgtccagca cgtgcccggt ccattgcacg tgcagctccc gggcggagaa cgcctcgtag
     2881 gccagcgggt cgcgcatcgc ctggccgaac ggcggcacgt cgcccgaacc gtcgtgcagg
     2941 atgtcgccgt tgccgtcgaa caccagcacg tagcgcacgt ccggttcgtg catggcatcg
     3001 cgggcgatgg tgccgatcgt atcgaggtcg aagtagtaca gcgggttggc cagcgccccc
     3061 gccagctggg agacctgcgc ctcgccgtgg cggcgcaggc gttcgaacac cagcccgtgc
     3121 atcgcctggc ggctctgcgc cagcacctcg cgctgcatcg cgccctgccg ttgcagcatc
     3181 agcagcacga tcgccagcat cagcagcaag gtggccgcga ccacggcgaa gaaccgcgcg
     3241 tgcaggccgc gcaggccgaa gggattcctc actcgacctc cgcgcgcacg cgctccacgc
     3301 cctcgcggac gcggcccagg ccggattcgg cgtccgcgtc gatcggcagg aagcgggtgg
     3361 tccgtgcgaa ctccagcagc ggttcgcggg cgtccgggtc cgtgccggcc tgcagcagca
     3421 cctcgcgcag ccgatcgcgc acgccggccg cgaggtcgcc gcgcaccacc tcgagcgcac
     3481 gcggatattc ggggctgcgg tccaccacca cgaaaccgtc ccggaacccc ggcggcatcg
     3541 actgcgggtt gtcccagtcg gcgtcgctgg cggtacccgc ctcgaccagg ccccgatgga
     3601 cccacgccgc gatgttggcc tgcgagcgcg cgaacacgta gcccaccgcc cccgcgcccg
     3661 gccggtccag cggcgaggcc agcagctgca gcgggagctg gcgatcgagc agccgcagcg
     3721 cgggcatgta gtaggcggcg gtggacgacc cgtcggcgaa ggcgatgctg ccgccgcgca
     3781 ggtcctccag gcggcgcacg cggctgtcgc tgcgcacgaa gacgacggcg tggtagcgac
     3841 tcgcgccgtc gcgctcgtcg agcagcagcg gctgcgcgcc gccctgcatc tgcagccgca
     3901 cgcccgtcgc ggcgctgccg gtgacccagt ccacgcggcc gcggcgcagg tagctcgcca
     3961 tctgccgcac gtcgcgcgcc atcaggatgc ggccctcgcg gatgcccacg ccttccatcc
     4021 gcgccaccgc gtactccagc agcggcttga gccggccgta gtctccggcc ggatcgtcgc
     4081 tgaccgcgcc catcaccagt acgtgcggat ccccggccgg ctgcggctcc gcggcacgcg
     4141 cgccgggagc gagcgcgagt acgccgcaca gcaggcagga gaggaactgg cgcacgcggg
     4201 gcgtccggcg aggcaaacag cggcgagcct agccgaattg cggggggcgc ggaacctgcc
     4261 gccgccggat cgtcagccgg cgccacgctc cgcggccagg cgggccatcc gctgcgcgtc
     4321 ggccagcacg ccgcgcagga tgcgcacctc gcgctcgtcg agcgccgccc gcaggaagat
     4381 gcgccgcagc ttgtgcatcg ccgcatcggg cgcgcggccc ttgtggaagt cgatcgcgtc
     4441 gagggtgtcg gcgagctggg cgaagaagct ttccagctgc gcatgcgacg cgggcgcctc
     4501 gcgatgcccg tcgaccaccc tggccggggc ttccagcatc gccatccgca gctcgtaggc
     4561 cagcacctgc accgcctgcg cgaggttgag cgagctgtag tcggggttgg ccgggatgtg
     4621 cacggcggca tggcacagct gcagttcctc gttggtgagg ccggtgcgct cgcggccgaa
     4681 cacgaaggcg acctcggcgc cctcgcgggc ggcatcgagc aggcgcgcgg cggcggcgcg
     4741 cggcgcgtac tcgtccagcg cgatgcgcct gctgcgcgcg gtgcagccgt agaccagctg
     4801 gcagtcggcg acggcctgcg ccaggtcggc gtgcacggtg gccgcggcca gcacgtcggc
//
LOCUS       DATIQC010000010         1728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_530642, whole genome shotgun sequence.
ACCESSION   DATIQC010000010 DATIQC010000000
VERSION     DATIQC010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530642"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..925
                     /locus_tag="VLM17_00240"
     CDS             <1..925
                     /locus_tag="VLM17_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64023.1"
                     /translation="HWWLGGTAVRDLGDLLQERDPEAGPFDAVADADGFVVLFAALQQ
                     GRRTLDLMRWTPAGPQERQELAAWDDFRTTTPRLVRDGDRWVAFWASNALVEFRDPQH
                     GWLGTEGRSEVRMSAGPGPGSRWAAPVRVAASATDIAQMAVAGGDASRVFFAANGLYE
                     NNAGAGIPAQPLRIAGYTAGFLAGSTDTSAVAATRCGGQVAVAWVDARYRRSDRRWWN
                     PLGGFPWGDNPDWANNDLFVATRIPREPGAAASLRPVRLTPRGSQTRDIALAVRNGQL
                     LVLRSGRARVRKAPDDAGAPPAVLQAIVPCD"
     gene            complement(1037..1525)
                     /gene="ybeY"
                     /locus_tag="VLM17_00245"
     CDS             complement(1037..1525)
                     /gene="ybeY"
                     /locus_tag="VLM17_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008571323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HSR64024.1"
                     /translation="MTKGPVRLDVSVGYAVPRAGIPSAVSFRKWVAAALAGRIREADL
                     AIRIVGAREGRALNRHYRGRDYATNVLSFPADVAEGVKLPKGVKMPLLGDLVLCAPVV
                     AREAKEQRKPLAEHYAHLTVHGALHLLGWDHEDAREAECMEQLEREILAGLDIADPYR
                     DE"
     gene            complement(1536..>1728)
                     /locus_tag="VLM17_00250"
     CDS             complement(1536..>1728)
                     /locus_tag="VLM17_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003478696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HSR64025.1"
                     /translation="LTQIDLPRHQKSGLKDALEVLHGVDGISFTFFEARDVVRHPLVA
                     RIVTAYDARDAQNASTGPA"
BASE COUNT          225 a          601 c          661 g          241 t
ORIGIN      
        1 tcactggtgg ctcggcggca ccgccgtgcg cgacctgggc gacctcctgc aggaacggga
       61 ccccgaggcc ggtccgttcg acgccgtggc cgacgcggac ggattcgtgg tgcttttcgc
      121 ggccctgcag cagggacgtc gaacgctgga cctcatgcga tggacgccgg ccgggccgca
      181 ggagcgacag gagctcgccg cctgggatga tttccggacg accaccccgc ggctggtgag
      241 ggacggcgat cgctgggtgg cgttctgggc gagcaatgcc ctggtcgagt tccgcgatcc
      301 gcagcatggc tggctcggga cggaggggcg gtcggaagtg cgcatgtccg ccgggccggg
      361 cccgggcagc cgttgggcgg cgccggtccg cgtcgccgcg tcggcgaccg acatcgcgca
      421 gatggcggtc gccggcgggg atgcgtcgcg cgtgttcttc gccgccaatg gcctgtacga
      481 aaacaacgct ggcgcgggca tcccggcgca gccgctgcgg atcgccggct acacggcggg
      541 attcctcgcc ggcagcaccg acaccagcgc ggtggccgcg acgcggtgcg gcggccaggt
      601 cgcggtggcc tgggtcgatg cccgttaccg ccgcagcgac cgccgctggt ggaatccgct
      661 gggcggattc ccgtggggcg acaacccgga ctgggccaac aacgacctgt tcgtcgccac
      721 gcggatcccg cgcgagccgg gcgcggccgc ttcgctccgg ccggtgcggc tgacgccgcg
      781 cggctcgcag acgcgcgaca tcgcgctcgc cgtgcggaac gggcaactcc tcgtgctgcg
      841 cagcggccgg gcgcgggtgc gcaaggcgcc ggacgacgcc ggcgccccac ccgcggtcct
      901 gcaggcgatc gttccctgcg actgagcctg gaagcccgga ggacacgagg gcagcacgca
      961 gcggcgctgt cgtgcgagcg cgcggtgact tcatcccgca ggtgaggcaa ggcgccgggc
     1021 attcgcccca ggcgcgtcac tcgtcgcgat agggatcggc gatgtccagg ccggcgagga
     1081 tctcgcgctc cagctgttcc atgcactcgg cctcgcgcgc gtcctcgtgg tcccagccga
     1141 gcaggtgcag tgcgccgtgc acggtcaggt gggcgtagtg ctcggcgagc ggcttgcgct
     1201 gttccttcgc ctcgcgcgcg accaccggcg cgcacagcac gaggtcgccg agcagcggca
     1261 tcttcacgcc cttgggcagc ttgacgccct cggcgacatc ggccgggaag ctcagcacgt
     1321 tggtcgcgta gtccctgccc cggtagtggc ggttgagcgc gcggccctcg cgcgcaccga
     1381 cgatgcggat ggcgaggtcg gcctcgcgga tgcgcccggc gagcgcggcc gcgacccact
     1441 tgcggaagct caccgcggag gggatgccgg cgcgcggcac cgcgtagccg acggagacgt
     1501 cgaggcggac gggtcctttc gtcatcggaa atccttcagg ccgggccggt ggaggcgttc
     1561 tgcgcgtcgc gcgcatcgta ggcggtgacg atgcgcgcca ccagcggatg gcgcacgacg
     1621 tcgcgcgcct cgaagaaggt gaagctgatg ccgtccacgc catgcagcac ttccagcgcg
     1681 tccttcagcc cggacttctg gtggcgcggc aggtcgatct gggtcagg
//
LOCUS       DATIQC010000011         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_795, whole genome shotgun sequence.
ACCESSION   DATIQC010000011 DATIQC010000000
VERSION     DATIQC010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_795"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..>1612
                     /gene="nuoG"
                     /locus_tag="VLM17_00255"
     CDS             142..>1612
                     /gene="nuoG"
                     /locus_tag="VLM17_00255"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HSR64026.1"
                     /translation="MTKVIVDGKEIDVPPEYTLLQACEAAGAEIPRFCFHERLSIAGN
                     CRMCLIEVAGIPKPQASCAMGVKDLPPNKDGSPKVLNTKTPMVRKAREGVMEFLLINH
                     PLDCPICDQGGECELQDLSMGYGRSVSRFSERKRVVADEDLGPLVATDMTRCIQCTRC
                     VRFTAEVAGTYELGGMQRGENLQIGTYDGKPLTTELSGNVIDVCPVGALTNKVFRFRA
                     RPWELVAKESLGYHDSLGSNLFLHVRRGDVLRTVPRDNEAVNECWLSDRDRYSHQGLY
                     AEDRALKPMIRVGHSGEASDWREASWDEALARAAQILKDNGADQLGMLVHPATSNEEG
                     ALLARLADALGTGNLDHRIAQRDLSDGAVAEAFAMPVADVEQADAIVIVGSQLRFELP
                     LLHARLRKAVKRGARVHVVNPVDFDFAFEVASKRIVPPSQLADALGQVQLDGASRVAL
                     IVGAVAENGAHAAAIRAAARSFAAAHGAASCRIPQGANAL"
BASE COUNT          262 a          559 c          548 g          243 t
ORIGIN      
        1 gccggtattc gttgtcgatc tcccggatca cagccgtcat tatccgtcct gggcaacgac
       61 aaagcgcgac gactggtgtg gcgagcatgt ccaccgggaa gtttaatcgg ttggcagacg
      121 gaacgagatg aagatcaggc aatgaccaag gttattgtag acggcaaaga gatcgatgtt
      181 ccgccggagt acacgctgct ccaggcctgc gaggctgcgg gcgcggaaat cccgcgcttc
      241 tgcttccacg agcgcctgtc gatcgccggc aattgccgga tgtgcctgat cgaagttgcc
      301 ggcattccca agccgcaggc ctcatgcgcc atgggcgtca aggatttgcc gccgaacaag
      361 gacggttcgc cgaaagtcct caataccaag acgccgatgg tgaggaaggc gcgcgaaggc
      421 gtgatggaat tcctgctgat caaccacccg ctcgactgcc cgatctgcga ccagggcggc
      481 gagtgcgagc tgcaggacct gtcgatgggc tacggccgct cggtctcgcg tttctccgag
      541 cgcaagcgcg tggtggcgga cgaggacctc gggccgctgg tcgccaccga catgacccgc
      601 tgcatccagt gcacgcgctg cgtgcgcttc accgcggaag tcgccggcac ctacgagctg
      661 ggcggcatgc agcgcggcga gaacctgcag atcggcacct atgacggcaa gccgctgacg
      721 accgagctgt cgggcaacgt catcgacgtg tgcccggtcg gcgcgctcac caacaaggtg
      781 ttccgcttcc gcgcccgtcc gtgggagctg gtggcgaagg agtcgctcgg ctaccacgat
      841 tcgctcggca gcaacctgtt cctgcacgtg cgccgcggcg acgtgctgcg caccgtgccg
      901 cgcgacaacg aggcggtcaa cgagtgctgg ctgtccgacc gcgaccgcta ctcgcaccag
      961 ggcctgtacg cggaggatcg cgcgctcaag ccgatgatcc gcgtcggcca ttccggcgag
     1021 gcgtccgact ggcgcgaggc gtcgtgggac gaggcgctcg cgcgcgccgc gcagatcctc
     1081 aaggacaacg gcgccgacca gctcggcatg ctggtccatc cggcgacctc gaacgaggag
     1141 ggcgcgctgc tggcgcgcct ggccgacgcg ctcggcaccg gcaacctcga ccaccgcatc
     1201 gcccagcgcg acctgtccga cggtgcggtc gccgaagcgt tcgcgatgcc ggtcgccgac
     1261 gtcgagcagg ccgacgccat cgtcatcgtc ggttcgcagc tgcgcttcga gctgccgctg
     1321 ctgcatgcgc gcctgcgcaa ggccgtcaag cgcggcgcca gggtgcacgt ggtcaatccg
     1381 gtcgacttcg acttcgcctt cgaagtcgcc agcaagcgca tcgtgccgcc gtcccagctc
     1441 gcggacgcgc tcggccaggt gcagctcgac ggcgccagcc gcgtcgcgct gatcgtcggc
     1501 gcggtggccg agaacggcgc gcacgccgcc gcgatccgcg ccgcggcccg cagcttcgcc
     1561 gccgcgcacg gcgccgcgtc gtgccgcatc ccgcagggcg ccaacgcgct cg
//
LOCUS       DATIQC010000012         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_601377, whole genome shotgun sequence.
ACCESSION   DATIQC010000012 DATIQC010000000
VERSION     DATIQC010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_601377"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..496)
                     /locus_tag="VLM17_00260"
     CDS             complement(5..496)
                     /locus_tag="VLM17_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014647721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HSR64027.1"
                     /translation="MTLLYVLAAILVLVGLAGIVLPALPGVPLVFAGMLLAAWADGFQ
                     RIGWVTLAVLGALALLSMGIDFWATAVGARRVGASRLAVAGALAGTLAGFWFGPIGLF
                     VGPFAGAALGELVALRRLDSDGLGRATRVGIGTWMGIVFGVALKLMLAFAMLGLFAWA
                     WFY"
     gene            complement(663..1151)
                     /locus_tag="VLM17_00265"
     CDS             complement(663..1151)
                     /locus_tag="VLM17_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HSR64028.1"
                     /translation="MNTRLLGACALFAAVAASGCATTSPGYSSSYPYGGSAAPAYGTT
                     ASCYDCGTVSRVEVVSAGTSSVPNATGAVVGGIVGGVAGHELSKNSSQGHQNLATVGG
                     AVAGAVAGNAIQNRAQANNTTYNIYVQMDNGTTQVVTQTGLNGIREGSLVRVDNGVAT
                     LR"
     gene            complement(1305..1721)
                     /locus_tag="VLM17_00270"
     CDS             complement(1305..1721)
                     /locus_tag="VLM17_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64029.1"
                     /translation="MASSASRYLFLFLVGLVVGAFATVVAMRAYDARTDHFPGSVMEV
                     MAWHMGQLKQDTQQHRCAATDTLPHLQALRTMANDIEPAFPSEHDNQRFGQYASDLRA
                     SLDAALASPPLNCPGVGTTLAKVGDGCQACHREFRD"
     gene            1784..>2075
                     /locus_tag="VLM17_00275"
     CDS             1784..>2075
                     /locus_tag="VLM17_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006451918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HSR64030.1"
                     /translation="MDRTWTERFSGIDRLYGQGALARLRGCRIAVVGLGGVGSWAVEA
                     FARSGVGAMVLIDADDLCLSNTNRQLPAVLGQYGHGKAAAMAERCFAINPEIS"
BASE COUNT          319 a          747 c          726 g          283 t
ORIGIN      
        1 tgcctcagta gaaccatgcc cacgcgaaca ggccgagcat ggcgaacgcc agcatcagct
       61 tcagcgcgac cccgaacacg atacccatcc aggtgccgat gcccacgcgc gtcgcgcgcc
      121 cgaggccgtc gctgtcgagc cggcgcaaag cgacgagctc gcccagcgcc gccccggcga
      181 agggcccgac gaacaggccg atcggcccga accagaagcc cgccagcgtt ccggccagcg
      241 cgcctgccac cgccagccgg ctggcaccga cgcgccgcgc gcccaccgcg gtggcccaga
      301 aatcgatgcc catcgacagc agcgccagcg cgccgagcac cgcgagcgtg acccagccga
      361 tgcgctggaa gccgtccgcc catgccgcca gcagcatgcc ggcgaacaca agcggcacgc
      421 ccggcagcgc cggcagcacg atgccggcga ggccgaccag gaccaggatc gcggccagca
      481 cgtagagcag ggtcatcggc ctccctcggt cacgcggcgc gccgatgcgc atgggttccg
      541 cgctgtcgtc gccagcatgc cacggccgcg cgcgccggtc cgcgcgcgcg tccgcccgcc
      601 acggcaagag aaaggcccgc cgaagcgggc cttcgcatcg ctcgtcccga tgcgttcctg
      661 gctcagcgca gcgtcgccac gccgttgtcg acccgcacca gcgaaccctc gcggatgccg
      721 ttgaggcccg tctgggtcac cacctgggtc gtgccgttgt ccatctgcac gtagatgttg
      781 taggtggtgt tgttggcctg cgcacggttc tggatcgcgt tgccggccac cgcaccggcc
      841 accgcgccgc ccaccgtggc gaggttctgg tggccctggc tgctgttctt gctcagttcg
      901 tggccggcga cgccgcccac gatgccgccg accaccgcgc cggtggcgtt cggcacgctg
      961 ctggtgccgg cggagacgac ctcgacgcgg ctcacggtgc cgcagtcgta gcacgaggcg
     1021 gtggtgccgt aggcgggcgc ggcgctaccg ccgtagggat agctggacga atagccgggc
     1081 gaggtggtcg cgcagccgga cgccgcgacc gcggcgaaca gagcgcaggc accgagcaga
     1141 cgagtgttca tgcgacttct cctgtcatgg acgaaggcgg gagccacggc tcgtcgccag
     1201 cgaccatcct gggaagccca cggtgaaagg gcggtcaacc ggcccgcgat ccgcgttccg
     1261 acgtcagcac gcattcaccc gcatgtgcgc gaagcgaaag cccgtcagtc acggaattcg
     1321 cgatggcagg cctggcaacc gtcgccgacc ttggcgagcg tggtgccgac gccggggcag
     1381 ttgagcggcg ggctggcgag cgcggcgtcg aggctggcgc gcaggtcgct ggcgtactgg
     1441 ccgaagcgct ggttgtcgtg ctcgctgggg aaggcgggct cgatgtcgtt ggccatcgtg
     1501 cgcagcgcct gcaggtgcgg cagcgtgtcg gtggcggcgc atcgatgctg ctgggtgtcc
     1561 tgcttgagtt ggcccatgtg ccaggccatc acttccatca cgctgccggg gaagtggtcg
     1621 gtgcgcgcgt cgtacgcacg catggccacc acggttgcga acgcgccgac caccaggccg
     1681 accaggaaca ggaacaggta tcgcgaggcg ctgcttgcca tcgtgcacgg ctccgggcgt
     1741 aaacgccggc gacgatagca cgcccgcccg ctagactttc cgcatggacc gcacctggac
     1801 cgagcgtttt tccggcatcg accgcctgta cgggcaaggc gcgctcgctc gcctgcgcgg
     1861 ctgccgcatc gcggtcgtcg gcctcggggg agtgggctcg tgggcggtgg aggcattcgc
     1921 gcgcagcggc gtcggcgcca tggtcctgat cgacgcggac gacctctgcc tgtccaacac
     1981 caaccgccag cttcccgccg tgctcggcca gtacggacac ggcaaggccg ccgcgatggc
     2041 cgagcgctgc ttcgcaatca atcccgaaat cagcg
//
LOCUS       DATIQC010000013         1737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_318719, whole genome shotgun sequence.
ACCESSION   DATIQC010000013 DATIQC010000000
VERSION     DATIQC010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318719"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(109..>1737)
                     /locus_tag="VLM17_00280"
     CDS             complement(109..>1737)
                     /locus_tag="VLM17_00280"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family zinc carboxypeptidase"
                     /protein_id="HSR64031.1"
                     /translation="AGTRRMRQAETGLRQAAAARVARRSGGPTAQAMTVVSQESIPGY
                     ACYRTVEETYATMDGLVSTHPTLAKVVDIGPTWSGAYRMRALELTNAATDAALPDKPT
                     MVAFASIHAREYTPAELLTRFGEWLANGYGNDAQATWLLDNFKFDLVLQGNQDGRKKA
                     ESGLSWRKNTDTSNGTCSASAYGIDLNRNFNFRWNSVSGGSSADPCASTYHGPKTLSE
                     AETRNLLRYVAGTRDSSGVYRNGALPDRRNDDTVSAAPTDYRGMFLDLHSYNQLVLWP
                     WAFSSSASPNAGPLRTLGRRLAYFNGYTPEQWIGMYAADGTDTDAVYGRLGAPSYTIE
                     FGVAFFEDCNTFETSTYPRNIAAIRYAARNLWAPYVLPSGPDTTSLSVSPGLAVPGTP
                     VTVTATSDDGTFNQSNGAETVQAIASVSAYLDAPPWASGATAAAMAPADGRFDGSRET
                     ATLRIDTSRLSAGRHVVYVRGTDAGGHPGTPQAVYFTVAKVRAEATGTAPPATAVPHP
                     GGTPPRASAPPGMPAQQGPQGGSGRGVAPRTQAF"
BASE COUNT          206 a          585 c          665 g          281 t
ORIGIN      
        1 cgagcaccag cgcgagatcc tgcgcgagct gggctgcctc tacggccagg ggttcctcta
       61 cggccgtccc gccgtggcgc cgctcggcgc gcacgacgtg gcgggtgcct agaaggcctg
      121 cgtgcgcggc gcgacgccgc gccccgaccc gccctgcggt ccctgctgcg cgggcatgcc
      181 cggcggcgcg gatgcgcgcg gcggggtgcc gccggggtgg ggaacggccg tcgccggcgg
      241 cgccgtgcct gtcgcctcgg cacgcacctt ggcgacggtg aagtacaccg cctgcggcgt
      301 gcccggatgg ccgccggcgt cggtgccgcg cacgtacacg acgtggcggc ccgcggagag
      361 ccggctggtg tcgatgcgca gcgtcgcggt ttcacggctg ccatcgaacc gcccgtcggc
      421 gggtgccatg gcggccgccg tcgcgccact cgcccacggc ggcgcgtcga ggtaggcgct
      481 gacggaggcg atcgcctgca ccgtctcggc gccgttgctc tggttgaagg tgccgtcgtc
      541 gctggtcgcg gtgacggtca ccggcgtgcc gggcacggcg agcccgggcg agacgctgag
      601 cgatgtcgtg tccgggcccg agggaaggac gtagggcgcc cacaggttgc gtgccgcata
      661 ccggatcgcg gcgatgttcc gcggataggt cgacgtctcg aacgtgttgc agtcctcgaa
      721 gaaggcgacg ccgaactcga tggtgtagct gggcgcgccg agcctgccgt acacggcgtc
      781 ggtatcggtg ccgtcggcgg cgtacatgcc gatccactgt tcgggggtgt agccgttgaa
      841 gtacgccagc cgccggccga gggtgcgcaa cggccccgcg ttgggactgg cgctgctgct
      901 gaaggcccac ggccacagca ccagctggtt gtagctgtgc aggtcgagga acatgccgcg
      961 gtaatcggtc ggcgcggcgc tgaccgtgtc gtcgttgcgg cggtcgggca gggcaccgtt
     1021 gcggtagacg ccgctgctgt cccgggtgcc cgcgacgtag cgcagaaggt tgcgcgtctc
     1081 cgcttccgac agcgtcttcg ggccgtggta ggtgctggcg cagggatcgg cactggagcc
     1141 ccccgacacg ctgttccagc ggaaattgaa attgcggttg aggtcgatgc cgtaggcgct
     1201 ggcgctgcag gtgccgttgc tggtgtcggt gttcttgcgc cacgacagcc ccgactcggc
     1261 cttcttgcgc ccgtcctggt tgccctgcag caccaggtcg aacttgaagt tgtcgagcag
     1321 ccaggtggcc tgggcgtcgt tgccgtagcc gttggcgagc cattcgccga agcgggtcag
     1381 cagttcggcc ggggtgtact cgcgcgcatg gatggaggcg aacgcgacca tcgtcggctt
     1441 gtcgggcagc gcggcatcgg tggcggcgtt ggtcagctcc agcgcgcgca tgcggtaggc
     1501 gccgctccag gtcggcccga tgtcgaccac cttggccagc gtcgggtggg tcgacaccag
     1561 cccgtccatc gtcgcgtagg tttcctccac cgtgcgatag caggcgtagc cgggaatgct
     1621 ctcctggctg accaccgtca tcgcctgcgc ggtcgggccg ccggaccggc gcgccacgcg
     1681 cgcggcggcc gcctggcgca gtcccgtttc ggcctggcgc atgcgccggg tccccgc
//
LOCUS       DATIQC010000014         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_424714, whole genome shotgun sequence.
ACCESSION   DATIQC010000014 DATIQC010000000
VERSION     DATIQC010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424714"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VLM17_00285"
     CDS             <1..643
                     /locus_tag="VLM17_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005415323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSR64032.1"
                     /translation="LKRLQVDYLDLFFCHRPDIDTPIEETVRAMHNLIQQGKVLYWGT
                     SEWTAQQITEAWGVARAYNLTPPTMEQPQYNLLHRARVEKEYAPLYAELGLGTTTWSP
                     LASGLLTGKYDEGVPADSRLAQDNYAWLQRGVFGDPAERRRDRARAFASQARQLGVAP
                     APLAIAWCLRNPHVSTVILGASRVPQLLENLEALELAERLAPADWQRIEAATA"
     gene            790..1749
                     /locus_tag="VLM17_00290"
     CDS             790..1749
                     /locus_tag="VLM17_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HSR64033.1"
                     /translation="MGLGSLLTVILVIAGIVLLFKTVRMVPQGYEWTVERFGRYTHTL
                     TPGLHFLVPVVYGIGRKVNMMEQVLEVPSQDVITKDNAVVKVDGIVFFQVLDAAKAAY
                     EVATLEIAILNLVMTNIRTAIGSMDLDESLSKRDEINAKVLVAVDQATHPWGIKVNRI
                     ELKDIAPPRDLVEAMARQMKAEREKRANILEAEGFRQAAILKAEGEKQSTILEAEGNR
                     EAAFRQAEARERLAEAEAKATKFVSDAIADGNVQAINYFVAQKYIEAFKSLAEAPNQK
                     FVMMPMESAGVIGSLGGIAELAKEALERPRATINAAPAPRAGG"
     gene            1751..2182
                     /locus_tag="VLM17_00295"
     CDS             1751..2182
                     /locus_tag="VLM17_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HSR64034.1"
                     /translation="MRWEVFAWAAVALVLFALEALAPGAFMLWLGFAAAVVFFVVLVF
                     PGIPLLAQAGAFVVLSFVSIQVYRSWFRRGEPASDQPMLNRRADQLVGRVVPLERAIV
                     NGRGRVQIADAFWDVSGPELPAGAAVRIVAAHGMTLEVREA"
     gene            2298..>2403
                     /locus_tag="VLM17_00300"
     CDS             2298..>2403
                     /locus_tag="VLM17_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005931494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64035.1"
                     /translation="MTQKTILTDTHRALGAKMVDFGGWDMPISYGSQID"
BASE COUNT          375 a          825 c          866 g          337 t
ORIGIN      
        1 gctgaagcgc ctgcaggtcg actatctcga cctcttcttc tgccatcgcc ccgacatcga
       61 cacgccgatc gaagagacgg tgcgggcgat gcacaacctg atccagcagg gcaaggtgct
      121 ctactggggc acgtcggaat ggacggcgca gcagatcacc gaagcctggg gcgtggcgcg
      181 cgcctacaac ctgacgccgc cgacgatgga gcagccgcaa tacaacctgc tgcaccgcgc
      241 gcgcgtcgag aaggaatacg cgccgctgta cgccgagctc gggctcggca cgacgacatg
      301 gtcgccgctg gcctcaggcc tgctcaccgg caagtacgac gagggcgtgc cggccgattc
      361 gcgactcgcc caggacaact acgcctggct gcagcgcggg gtgttcggcg acccggccga
      421 gcgccgccgc gaccgcgcgc gcgccttcgc ctcgcaggcg cgccagctcg gtgtcgcgcc
      481 ggcgccgctg gcgatcgcct ggtgcctgcg caacccgcac gtgtccacgg tgatcctcgg
      541 cgcgagccgg gtgccgcagc tgctggagaa cctggaggcg ctggagctcg ccgagcgcct
      601 cgcgccggcg gactggcagc ggatcgaggc ggccacggcg taaggccgcg ccgccgccgc
      661 cgaggcaggc gccggccagc tgtcgctttg gttgcggccg gagccggacg cgggccctgc
      721 cggaagtccc gatgccgcac cggggcggac cgtcgcatac tcgcgccaac cacaagggag
      781 taggccgcca tgggactggg ttcgctgttg accgtgatcc tcgtgatcgc cggcatcgtg
      841 ctgctgttca agaccgtgcg gatggtgccg cagggctacg aatggacggt ggaacgcttc
      901 ggccgctaca cccacacgct gacgcccggc ctgcacttcc tggtgccggt ggtctacggc
      961 atcggccgca aggtcaacat gatggagcag gtcctggagg tcccgtcgca ggacgtgatc
     1021 accaaggaca acgcggtggt caaggtcgac ggcatcgtgt tcttccaggt gctcgacgcg
     1081 gccaaggcgg cctacgaggt ggcgacgctc gagatcgcga tcctcaacct cgtgatgacc
     1141 aacatccgta ccgcgatcgg ctcgatggac ctcgacgaat cgctgtccaa gcgcgacgag
     1201 atcaacgcca aggtgctggt cgcggtcgac caggcgaccc atccctgggg catcaaggtc
     1261 aaccgcatcg agctcaagga catcgccccg ccgcgcgacc tcgtcgaggc gatggcgcgg
     1321 cagatgaagg ccgagcgcga gaagcgcgcc aacatcctcg aggcggaggg cttccgccag
     1381 gcggcgatcc tcaaggccga gggcgagaag cagtcgacga tcctggaggc ggaaggcaac
     1441 cgcgaggccg ccttccgcca ggccgaggcg cgcgagcgcc tcgccgaggc cgaggccaag
     1501 gcgaccaagt tcgtctccga cgcgatcgcc gatggcaacg tgcaggcgat caactacttc
     1561 gtcgcgcaga agtacatcga ggccttcaag tcgctggccg aggcgccgaa ccagaagttc
     1621 gtgatgatgc cgatggagtc ggccggcgtg atcggttcgc tcggcggcat cgccgagctc
     1681 gcgaaggaag cgctcgagcg gccgcgcgcg acgatcaacg ccgcgccggc gccgcgcgcg
     1741 ggaggctgag atgcgctggg aagtgttcgc gtgggcggcg gtcgcgctgg tgctgttcgc
     1801 gctggaagcg ctggcgccgg gcgcgttcat gctgtggctg ggcttcgccg ccgccgtggt
     1861 gttcttcgtg gtgctggtgt tcccgggcat tccgctgctg gcgcaggccg gtgcgttcgt
     1921 cgtgctcagc ttcgtctcga tccaggtcta ccgcagctgg ttccgccggg gcgagccggc
     1981 gagcgaccag cccatgctca atcgccgcgc cgaccagctg gtcggccggg tggtgccgct
     2041 ggagcgcgcg atcgtcaacg gccgcgggcg ggtgcagatc gccgacgcgt tctgggacgt
     2101 cagcggcccg gaactgccgg ccggcgccgc ggtgcgcatc gtcgccgcgc acgggatgac
     2161 gctggaagtg cgcgaggcgt aggcggtccg ccccgcggcc gacgccggcg cgggtcggag
     2221 cgcaccgcgc cggcggcggg cgcgcgacgg cggcgtttgc gacaatcgtg ggctccctcc
     2281 ccacatccgc gccggccatg acccagaaga ccatcctcac cgacacccac cgcgcgctcg
     2341 gcgccaagat ggtcgacttc ggcggctggg acatgccgat cagctacggc tcgcagatcg
     2401 acg
//
LOCUS       DATIQC010000015         6502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_460072, whole genome shotgun sequence.
ACCESSION   DATIQC010000015 DATIQC010000000
VERSION     DATIQC010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6502
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460072"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /locus_tag="VLM17_00305"
     CDS             <1..1097
                     /locus_tag="VLM17_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HSR64036.1"
                     /translation="RLSAENIPQVAVVMGSCTAGGAYVPAMCDESVIVREQGTIFLGG
                     PPLVKAATGEVVDAESLGGADVHTSVSGVADHFAEDDRDALQIARDIVAGFNRGKRVD
                     VAVQPSREPLFDAGELYGIVPKDTRRPFDIREVIARIVDGSEFREFKARYGRTLVCGF
                     AHIHGYPVGIVANNGILFSESALKGAHFIELCDQRGIPLVFLQNITGFMVGRKYENAG
                     IAKDGAKMVTAVACTSVPKFTVVIGGSFGAGNYAMCGRAYGARFLWMWPNARISVMGG
                     EQAASVLATVKRDALEASGKTWSAEDEEAFKTPIRDQYESQGNPYYATARLWDDGIID
                     PADTRRVLGLGLSAALNAPVERGRFGVFRM"
     gene            1246..1755
                     /locus_tag="VLM17_00310"
     CDS             1246..1755
                     /locus_tag="VLM17_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007967362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HSR64037.1"
                     /translation="MAIFNPQTPAKKEAASFTPDPPPFREAPANADAMPASTPAPAAR
                     AEPQAKESLIASDLTIEGKIEGAGHVRIAGRFKGDVNVQGDLTLDAGAKLTGSVRARK
                     VVIAGELEGNIDGAQRVELLQGGVLVGDVKAGTLTVAAGARMRGQVDFGWEDKAKAGG
                     SAESNAAAA"
     gene            1752..2117
                     /locus_tag="VLM17_00315"
     CDS             1752..2117
                     /locus_tag="VLM17_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64038.1"
                     /translation="MNVARQGSPGATRPCPHCKAVILESASVCPACRGHLRYDEASLQ
                     RAKTRSVPLGIEGTLSAPEGEAVHEYSMVLSIRDERGEEITRQVIGVGALFPGDTRSF
                     TLQVEMTEATGAKATRRRH"
     gene            complement(2224..2469)
                     /locus_tag="VLM17_00320"
     CDS             complement(2224..2469)
                     /locus_tag="VLM17_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6587 family protein"
                     /protein_id="HSR64039.1"
                     /translation="MQAGLLAQYVVVTVAVLLSVVVVARKQFPEGVRRLRIACAIPLV
                     RAGRAPWLQRLGRWLAPAPRGGGGDGCDGCNGCDDRK"
     gene            complement(2469..4352)
                     /gene="feoB"
                     /locus_tag="VLM17_00325"
     CDS             complement(2469..4352)
                     /gene="feoB"
                     /locus_tag="VLM17_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008265453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HSR64040.1"
                     /translation="MNPAHPFAADALLRVALVGNPNCGKTALFNLLTGSRQKVANYAG
                     VTVERKEGRLQAPSGRSYALLDLPGAYSLNAASLDEAITRDLCRGFLPGEPVPDVLVC
                     VVDATNLRLHLRFVLELRELGRPMIVAVNMADAAHRRNIGIDLAALERELGVPVVETV
                     AVRRDGARALIASLDGLAQAPHAPKARLADLGEQALHAETRRLLAVAVTMPRRTAEID
                     DALDRWLLHPVFGLLALATVMFLIFQAVFSWATPLQDGVAAGIAWLGQQVAAMLPEGP
                     LHSLVVDGVFAGAGTVIEFLPQILILFLFILALEESGYLPRAAFLLDRVMFKAGLSGR
                     SFIPLLSSFACAVPGIMATRSIQDPRDRLATILVAPLMTCSARLPVYTLLIGAFIPST
                     KVGGVFNLQGLVLFALYVAGIVSALGVAWVMKRWRRDRSEHALLLELPSYRLPHPRDL
                     AIGLWERARIFLRRVGGIILALTVLLWFLASFPAPPAGATLPAIDYSLAGRLGHAMQH
                     AFAPIGFNWQICVALVPGMAAREVAVSSLATVYALAAGTNDAAAAAQLAPILHAQWSL
                     ATALSLLVWYIYAPQCLSTLAIIRRETHSWKQVGIAAGYLFALAYLMSLATYQLAVAL
                     GAG"
     gene            complement(4349..4594)
                     /locus_tag="VLM17_00330"
     CDS             complement(4349..4594)
                     /locus_tag="VLM17_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010367126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FeoA domain-containing protein"
                     /protein_id="HSR64041.1"
                     /translation="MRLSDLPRRIAAIVQHVEDRAPNDPIARRLRELGFVQGEPVEVM
                     AAGPLGAEPLLVQVGFTRFALRRSEAERVRVRVEVAA"
     gene            4740..5525
                     /locus_tag="VLM17_00335"
     CDS             4740..5525
                     /locus_tag="VLM17_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HSR64042.1"
                     /translation="MSDPLLVQVEAGIARLRLNRPALHNAFDAALIAMLTDALARVGA
                     DPGVRAVVLEGEGASFSAGADLNWMRGMASASEADNRDDALALARLMRALDELPRPTI
                     ARVHGAAFGGGVGLVACCDIAIGAPEAKFGLTESRLGLLPAVISPYVISAIGARQARR
                     WFATAEIFDAREAHRIGLLHEVVEAEALDRAVQRQLDLLRKAGPRAAAAAKALVRRVA
                     AGGGGAAVDAANADLIAALRVSAEGQEGLSAFLDKRRPAWSAE"
     gene            5540..6067
                     /locus_tag="VLM17_00340"
     CDS             5540..6067
                     /locus_tag="VLM17_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR64043.1"
                     /translation="MNDIAKPLVNVDEIELQPRPPQFAATGDAAQRYDARMGMVAPRI
                     GAKLLGYNITAVPPGRRAFPAHNHRVNEEMFFILEGHGELRVGDRTWPVRAGDIVACP
                     PGGPETAHQLANTGDAELKYLAVSTRLSPELCEYPDSGKFGIMADFGKDADGAPQVFR
                     HIGRTGDARGYWEGE"
     gene            6072..>6502
                     /locus_tag="VLM17_00345"
     CDS             6072..>6502
                     /locus_tag="VLM17_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HSR64044.1"
                     /translation="MFQKILIANRGEIACRVIRTCRRLGVRTVAVYSDADADAQHVRL
                     ADAAYPIGGPRPQDSYLRGDAIVEAAKRSGAQAIHPGYGFLSENADFADAVERAGLRF
                     IGPAADSMRRMGSKAGAKDLMASRGVPVVPGYTGEDQDPALL"
BASE COUNT         1014 a         2364 c         2294 g          830 t
ORIGIN      
        1 cgcggctgtc ggcggagaac atcccgcagg tcgcggtggt gatgggcagc tgcaccgccg
       61 gcggcgccta cgtgccggcg atgtgcgacg aatcggtcat cgtcagggaa cagggcacga
      121 tcttcctcgg cggcccgccg ctggtgaagg ccgcgaccgg cgaagtcgtg gacgccgaat
      181 cgctcggcgg cgccgacgtg cacaccagcg tgtcgggagt ggccgaccac ttcgccgagg
      241 acgaccgcga cgcattgcag atcgcgcgcg acatcgtcgc cggcttcaac cgcggcaagc
      301 gggtcgacgt cgcggtgcag ccttcgcgcg agccgctgtt cgacgccggg gagctctacg
      361 gcatcgtgcc gaaggacacc cgccgcccgt tcgacatccg cgaggtcatc gcccgcatcg
      421 tcgacggcag cgaattccgg gaattcaagg cgcgctacgg caggacgctg gtatgcggct
      481 tcgcccacat ccatggttac cccgtcggca tcgtcgcgaa caacggcatc ctgttctccg
      541 agagcgcgct caagggcgcg cacttcatcg aactgtgcga ccagcgcggc atcccgctgg
      601 tattcctgca gaacatcacc ggcttcatgg tcggcaggaa gtacgagaac gccggcatcg
      661 ccaaggatgg cgcgaagatg gtcaccgcgg tggcctgcac gtcggtgccg aagttcaccg
      721 tggtcatcgg cggcagcttc ggcgccggca actacgcgat gtgcggccgc gcctacggcg
      781 cgcgcttcct gtggatgtgg ccgaacgccc gtatttcggt gatgggcggc gaacaggccg
      841 cctcggtttt ggcgaccgtg aagcgcgacg cgctcgaagc atccggcaag acgtggtccg
      901 ccgaggacga agaggcgttc aagacaccga tccgcgacca gtacgagagc cagggcaatc
      961 cctactacgc caccgcgcgg ctgtgggacg acggcatcat cgacccggcc gatacccgcc
     1021 gcgtgctcgg gctcgggctg tcggccgcgc tgaacgcgcc ggtcgagcgt ggccgcttcg
     1081 gcgtgttccg gatgtagcgc gaggcccttc gctgactgga tccgtaacgg cccgcggccc
     1141 gcgtgccgga tgtttttttt gcggcacgac gtcacgggct ggcgtcgtca ggcgcgtgct
     1201 aggctcggcc gctcagggga ttcatcgagc accagaggac agcacatggc gatcttcaac
     1261 ccgcagaccc cggccaaaaa ggaagcggcc tcgttcactc ccgatccgcc gcccttccgc
     1321 gaagccccgg ccaatgcgga cgccatgcct gcctccacgc ccgcgccggc cgcgcgcgcc
     1381 gagccgcagg cgaaggaatc gctgatcgcc tccgacctca ccatcgaggg caagatcgaa
     1441 ggcgccggcc acgtccgcat cgccggccgc ttcaagggcg acgtcaacgt gcagggcgac
     1501 ctgacgctcg acgccggcgc caagctcacc ggctcggtgc gcgcgcgcaa ggtcgtcatc
     1561 gccggcgagc tcgaaggcaa catcgacggc gcgcagcgcg tcgagctgct gcagggcggc
     1621 gtcctggtcg gcgacgtcaa ggccggcacc ctcaccgtcg ccgccggcgc gcgcatgcgc
     1681 ggccaggtcg acttcggctg ggaagacaag gccaaggccg gcggcagcgc cgagagcaac
     1741 gccgcggcgg catgaacgtc gcgcgccagg gcagccccgg cgcgacgcgc ccctgcccgc
     1801 actgcaaggc cgtcatcctc gaaagcgcca gcgtgtgtcc cgcctgccgg ggccacctgc
     1861 gctacgacga ggcgtccctg cagcgcgcga agacgcgcag cgtgccgctc ggcatcgagg
     1921 gcacgctgtc ggcgccggag ggcgaggcgg tgcacgaata ttcgatggtg ctctcgatcc
     1981 gcgacgagcg cggcgaggag atcacgcgcc aggtgatcgg cgtgggcgcc ctgttccccg
     2041 gcgacacgcg cagcttcacc ctgcaggtcg agatgaccga agcgacgggc gcgaaggcga
     2101 cgcggcgtcg gcattaggcg ccgccgggaa ttcggcgaca tcgcgcgggc tcctccgcgg
     2161 cgtcgatccc ctttccggtg aggcagcccg cgacggatgg catcgcccct cgcaacgaag
     2221 tccctacttc ctgtcgtcgc aaccgttgca gccgtcgcag ccgtcaccgc cgccgccacg
     2281 cggcgcgggg gccagccagc gccccaggcg ctgcaaccag ggcgccctgc ccgcgcgcac
     2341 cagcggaatg gcgcaggcga tgcgcaggcg gcgcacgcct tccggaaact gcttgcgcgc
     2401 gaccacgacc acgctcagca gcaccgccac cgtgaccacg acgtactgcg cgagcagccc
     2461 ggcctgcatc accccgctcc gagggccacc gcgagctggt aggtggccag cgacatgagg
     2521 taggccagcg cgaacaggta gccggcggcg atgccgacct gtttccacga gtgcgtctcg
     2581 cgccggatga tcgccagtgt cgacaggcac tgcggcgcgt agatgtacca gaccagcagc
     2641 gacagcgcgg tcgccagcga ccactgcgcg tgcaggatcg gcgcgagctg cgcggccgcc
     2701 gccgcgtcgt tggtgccggc cgcaagcgcg tagacggtgg cgagcgaaga caccgccacc
     2761 tcgcgcgcgg ccatgcccgg caccagcgcg acgcagatct gccagttgaa gccgatcggc
     2821 gcgaacgcgt gctgcatcgc gtggccgagc cgaccggcca ggctgtagtc gatcgcaggc
     2881 agcgtggcgc ccgccggcgg cgccgggaag ctggcgagga accacagcag caccgtcagc
     2941 gcgaggatga tgccgccgac gcggcgcagg aagatgcgcg cgcgctccca caggccgatg
     3001 gcgaggtcgc gcgggtgcgg caggcggtag gacggcagct cgagcagcag cgcgtgctcg
     3061 ctgcggtcgc ggcgccagcg cttcatcacc cacgccaccc ccagcgcgct gacgatgccc
     3121 gccacgtaca gcgcgaacag caccagcccc tgcaggttga acacgccacc gaccttcgtc
     3181 gaggggatga acgcgccgat cagcagcgtg tacaccggca gccgcgccga gcaggtcatc
     3241 agcggcgcga ccaggatggt ggccaggcgg tcgcgcgggt cctggatcga gcgcgtggcc
     3301 atgatcccgg gcaccgcgca ggcgaagctc gacagcagcg ggatgaagct gcgcccggac
     3361 agccccgcct tgaacatcac ccggtcgagc aggaaggccg cgcgcggcag gtaacccgat
     3421 tcctccagcg cgaggatgaa gaggaacagg atcaggatct gcggcaggaa ttcgatgacg
     3481 gtgccggcgc cggcgaacac gccatcgacg acgaggctgt gcagcggccc ctccggcagc
     3541 atcgcggcca cctgctggcc gagccacgcg atgcccgccg ccacgccatc ctgcagcggc
     3601 gtggcccagg agaacaccgc ctggaagatc aggaacatca ccgtcgccag cgccagcagg
     3661 ccgaacaccg ggtgcagcag ccagcggtcg agcgcgtcgt cgatctccgc ggtgcgccgc
     3721 ggcatcgtca ccgccaccgc cagcagccgg cgcgtttccg cgtgcagcgc ctgctcgccc
     3781 aggtcggcga ggcgggcctt gggcgcgtgc ggggcctgcg ccagcccgtc gagcgaggcg
     3841 atgagcgcgc gcgcgccgtc gcgccgcacc gccacggttt ccaccaccgg caccccgagc
     3901 tcgcgctcca gcgccgccag gtcgatgccg atgttgcgcc ggtgcgcggc gtcggccatg
     3961 ttgaccgcga cgatcatcgg ccgcccgagt tcgcgcagtt cgagcacgaa gcgcaggtgc
     4021 agccgcaggt tggtcgcgtc gaccacgcac accagcacgt cgggcaccgg ctcgccgggc
     4081 aggaagcccc ggcacaggtc gcgggtgatc gcctcgtcca ggctcgccgc gttgaggctg
     4141 taggcgccgg gcaggtcgag cagcgcatag ctgcggccgg acggcgcctg caggcggcct
     4201 tccttgcgct cgacggtgac gccggcgtag ttggcgacct tctgccggct gccggtcagc
     4261 aggttgaaca gcgcggtctt gccgcagttc gggttgccga ccagcgccac ccgcagcagc
     4321 gcatccgcgg cgaaggggtg ggccgggttc atgcggccac ctcgacccgt acccgcacgc
     4381 gctcggcctc gctgcggcgc agggcgaagc gggtgaagcc gacctgcacc agcagcggtt
     4441 cggcgcccag cgggccggcc gccatcacct cgaccggctc gccctgcacg aagccgagct
     4501 cgcgcaggcg gcgcgcgatc gggtcgttcg gggcgcggtc ctcgacgtgc tggacgatgg
     4561 cggcgatgcg ccgcggtaga tccgacagtc tcacgagggg aaacccaaat gggaattgtt
     4621 ctcattatag ggccgggcgc gcgcccctgt cttgcgccgg atcaagctcc tccggccgcc
     4681 gcgacccggt gcatgccgcg cctgcggcta tcattcagct tttccacgtg caccgcccca
     4741 tgagcgaccc gctgctcgtc caagtcgagg ccggcatagc ccgcctccgg ctcaaccggc
     4801 ccgcgctgca caatgccttc gatgcggcgc tcatcgccat gctcaccgac gcgctggcgc
     4861 gggtgggcgc cgatcccggc gtgcgcgcgg tggtgctgga gggcgaaggc gcgtcctttt
     4921 cggccggcgc cgacctcaac tggatgcgcg ggatggcgtc ggcgtcggag gcggacaacc
     4981 gcgacgacgc gctcgccctc gcccgcctga tgcgcgcgct cgacgaactg cccaggccca
     5041 ccatcgcgcg cgtgcacggc gcggccttcg gcggcggcgt cggcctggtc gcctgctgcg
     5101 acatcgcgat cggcgcgccg gaagcgaagt tcggcctgac cgaaagccgg ctgggcctgc
     5161 tgccggccgt gatctcgccc tacgtgatct cggcgatcgg cgcccgccag gcgcggcggt
     5221 ggttcgccac cgcggaaatc ttcgacgccc gggaagccca tcgcatcggc ctgctccacg
     5281 aggtggtcga ggcggaggcg ctcgaccggg ccgtgcaacg ccagctcgac ctcctgcgca
     5341 aggccggccc gcgggcagcc gcggcggcga aggcgctggt gcggcgcgtg gccgccggtg
     5401 gcgggggtgc ggcggtggat gccgccaacg ccgacctgat cgccgccctg cgcgtatccg
     5461 ccgaaggcca ggaaggcctg tccgccttcc tcgacaagcg caggcccgcc tggagcgcgg
     5521 agtgaccgga gcacacgcca tgaacgacat cgccaagccg ctggtcaacg tcgacgagat
     5581 cgaactgcag ccgcggccgc cgcagttcgc cgccaccggg gacgccgcgc agcgctacga
     5641 cgcgcgcatg ggcatggtcg ccccgcgcat cggcgcgaag ctgctcggct acaacatcac
     5701 cgcggtgccg cccggcaggc gcgcgttccc cgcgcacaac catcgcgtca acgaggagat
     5761 gttcttcatc ctcgagggcc acggcgaact gcgcgtgggc gaccggacct ggccggtgcg
     5821 cgcgggcgac atcgtcgcct gcccgccggg cggccccgag accgcgcacc agctcgccaa
     5881 caccggcgac gccgaactga aatacctcgc ggtcagcacc aggctctcgc cggaactgtg
     5941 cgaatacccg gattccggca agttcgggat catggccgat ttcggcaagg acgcggacgg
     6001 cgcgccgcag gtcttccgcc acatcgggcg caccggcgac gcgcgcggct actgggaagg
     6061 cgaataacgc gatgttccag aagatcctca tcgccaaccg cggcgagatc gcctgccggg
     6121 tgatccgcac ctgccggcgg ctcggcgtcc gcaccgtcgc ggtgtattcg gacgccgacg
     6181 ccgacgcgca gcacgtgcgc ctcgctgacg cggcctatcc gatcggcggc ccacgcccgc
     6241 aggacagcta cctgcgcggc gacgcgatcg tcgaagcggc gaagcgatcc ggcgcgcagg
     6301 cgatccatcc gggttacggt tttctgtccg agaacgccga cttcgccgac gccgtcgagc
     6361 gcgctgggct tcgcttcatc ggccccgccg ccgactcgat gcgccgcatg ggctcgaagg
     6421 ccggcgcgaa agacctgatg gcgagccgcg gcgtgccggt cgtgccgggc tacacgggcg
     6481 aagaccagga tcccgcgctg ct
//
LOCUS       DATIQC010000016         2980 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_389534, whole genome shotgun sequence.
ACCESSION   DATIQC010000016 DATIQC010000000
VERSION     DATIQC010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2980
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389534"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2007
                     /locus_tag="VLM17_00350"
     CDS             <1..2007
                     /locus_tag="VLM17_00350"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR64045.1"
                     /translation="ELRTPLNSILILGQQLAENPETNLTGRQVEFAKTIHAAGTDLLH
                     LISDILDLSKIESGTVTVDSEEIGFQLLRENLERAFRHEAERRHLDFSVDIAPDVGPA
                     FSTDPKRLQQILKNLLSNALKFTERGSVRLAARVAKGGWSLGHPILDTAATVIAFDVT
                     DTGIGISPEKQKIVFEAFQQADAGTARKYGGTGLGLAISREIAGLLGGELRLTSKPGQ
                     GSTFTLYLPLHYMGAANPIEAHVRDAQPSRPAQHAQAVAEAAAQARLEEVPDDRDALQ
                     PGEPSLLVVEDDPRYATVLRDHARSCGFKVLVANRGNEALRLVRDYRPSAITLDIFLP
                     DMLGWTVLARLKQDSATRHIPVQVITVEEERHHSIERGAFSYLAKPASHETIDAALER
                     IRAYTLAATRRLLIVEDNEAERMSIEELVRHDDVEIDTVSTGAQALEAMRERPYDCVV
                     LDLRLPDMSGFDLLDVVQGDPALRDLPIVVFTGKELTADEDRRLKKAAKSVVIKGVES
                     PERLLDETALFLHRVVADLPPAKRRMVQRLHESDETLKDKRVLVVDDDVRNIFALSSV
                     LERHGMDVVTAGTGQEAIEKVTDDPEIDLVLMDIMMPGMDGYDTMRAIRGDPDSRALP
                     IVALTAKAMKGDREKCLEAGASDYLAKPVVTDQLLGVLRQWLHR"
     gene            1992..>2980
                     /locus_tag="VLM17_00355"
     CDS             1992..>2980
                     /locus_tag="VLM17_00355"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR64046.1"
                     /translation="MAASLNQTPRPVDDGPVNILLVDDQPGRLLTYRAILEPLGEHLV
                     EASSGMEALKRLMDDEYAVILLDVNMPGMDGFETASLIHQHPRFEKTPIIFVTAVNVT
                     DMDRLRGYKLGAVDFVLVPVIPEILRSKVMVLAELYRRRRQLQQANVALEAEKARELE
                     LLNASLRKANAELAARNMDLRNEIADRIRAEGRLREADRRKDDFLATLAHELRNPLAP
                     LLNAVNVRRLASGGADDPLHQVMERQLALLVRLIDDLLDVARVTRGKLVLQRQATTLQ
                     EVLRSAIEIAQPLLDSGNHHLQLDLPAQDVALFVDRVRLSQVFANLLNNAAKYS"
BASE COUNT          507 a         1082 c          996 g          395 t
ORIGIN      
        1 gagctgcgca cgccgctcaa ctcgatcctg atcctcggcc agcagctcgc cgagaacccg
       61 gagacgaacc tgaccggccg ccaggtcgag ttcgccaaga ccattcacgc ggccggcacc
      121 gacctgctgc acctgatcag cgacatcctc gacctgtcga agatcgaatc gggcaccgtc
      181 accgtcgaca gcgaggagat cggcttccag ctgctgcgcg agaacctcga gcgcgcgttc
      241 cgccacgagg ccgagcgccg ccacctcgac ttctcggtcg acatcgcgcc cgacgtcggc
      301 ccggcgttca gcaccgaccc caagcgcctg cagcagatcc tcaagaacct gctgtcgaac
      361 gcgctcaagt tcaccgaacg cggcagcgtg cggctggcgg cgcgcgtggc caagggcggc
      421 tggagcttgg gccacccgat cctggacacc gccgcgacgg tgatcgcctt cgacgtcacc
      481 gacaccggca tcggcatctc gccggagaag cagaagatcg tgttcgaggc gttccagcag
      541 gccgacgccg gcaccgcgcg caagtacggc ggcaccggcc tgggcctcgc catcagccgc
      601 gagatcgccg gcctgctcgg cggcgagctg cgcctgacca gcaagcccgg ccagggcagc
      661 accttcaccc tgtacctgcc gctgcactac atgggcgcgg ccaacccgat cgaagcgcac
      721 gtgcgcgacg cgcagccctc gcgccccgcc cagcacgcgc aagcggtggc cgaggccgcg
      781 gcgcaggcgc ggctggagga ggtgcccgac gatcgcgacg cgctgcaacc gggcgagccg
      841 tcgctgctgg tggtcgagga cgacccgcgc tacgccacgg tgctgcgcga ccacgcccgc
      901 tcgtgcggct tcaaggtgct ggtcgccaac cgcggcaacg aggcgttgcg gctggtgcgc
      961 gactacaggc cgagcgcgat cacgctcgac atcttcctgc ccgacatgct cggctggacg
     1021 gtgctcgcgc gcctgaagca ggactcggcg acgcgccaca tccccgtgca ggtcatcacc
     1081 gtggaggaag agcgccacca cagcatcgag cgcggcgcgt tctcctacct cgccaagcct
     1141 gccagccacg agacgatcga cgcggcgctg gagcgcatcc gcgcgtacac gctggcggcg
     1201 acgcgccgcc tgctgatcgt cgaggacaac gaggccgagc gcatgagcat cgaggagctg
     1261 gtgcgccacg acgacgtcga gatcgacacc gtgtccaccg gcgcgcaggc gctggaggcg
     1321 atgcgcgagc gcccctacga ctgcgtggtg ctcgacctgc gcctgccgga catgagcggc
     1381 ttcgacctgc tcgacgtcgt gcagggcgac cccgcgctgc gcgacctgcc gatcgtggtg
     1441 ttcaccggca aggagctcac cgccgacgag gaccgccggc tgaagaaggc ggccaagtcg
     1501 gtggtgatca agggcgtgga atcgcccgag cgcctgctcg acgagaccgc gctgttcctg
     1561 caccgggtcg tcgccgacct gccgccggcc aagcggcgca tggtccagcg cctgcacgag
     1621 tccgacgaga ccctcaagga caagcgcgtg ctggtggtcg acgacgacgt gcgcaacatc
     1681 ttcgcgctgt ccagcgtgct ggagcgccac ggcatggacg tggtcaccgc aggcaccggc
     1741 caggaggcga tcgagaaggt cacggacgac cccgagatcg acctcgtgct gatggacatc
     1801 atgatgcccg gcatggacgg ctacgacacc atgcgcgcga tccgcggcga ccccgattcg
     1861 cgcgcgctgc cgatcgtcgc gctaaccgcc aaggcgatga agggcgaccg cgagaagtgc
     1921 ctggaagccg gcgcgtcgga ttacctcgcc aagcccgtcg ttaccgacca gctgctcgga
     1981 gtgctgcgcc agtggctgca tcgctgaacc agacgccgcg tccggtggac gacggcccgg
     2041 tcaacatcct gctggtcgac gaccagccgg gccggctgct gacctatcgc gcgatcctcg
     2101 agccactcgg cgagcacctc gtcgaggcca gttcgggcat ggaggcgctc aagcgcctga
     2161 tggacgacga gtacgcggtg atcctgctcg acgtcaacat gccgggcatg gacggcttcg
     2221 agaccgcgag cctgatccac cagcacccgc gcttcgagaa gacgccgatc atcttcgtca
     2281 ccgcggtcaa cgtcaccgac atggaccgcc tgcgcggcta caagctcggc gcggtcgact
     2341 tcgtgctggt gccggtcatc ccggagatcc tgcgcagcaa ggtgatggtg ctggccgagc
     2401 tctaccggcg ccggcgccag ctgcagcagg ccaacgtcgc gctggaggcc gagaaggcgc
     2461 gcgagctgga gctgctcaac gcctcgctgc gcaaggccaa cgccgagctg gccgcgcgca
     2521 acatggacct gcgcaacgag atcgccgacc gcatccgcgc cgaggggcgc ctgcgcgagg
     2581 ccgaccggcg caaggacgac ttcctcgcca ccctcgccca cgagctgcgc aatccactgg
     2641 cgccgctgct caacgcggtc aacgtgcgcc gcctggccag tggcggcgcc gacgatccgc
     2701 tgcaccaggt gatggagcgc cagctcgcgc tgctggtgcg cctgatcgac gacctgctcg
     2761 acgtcgcccg cgtcacccgc ggcaagctgg tgctgcagcg gcaggcgacc acgctgcagg
     2821 aagtgctgcg atcggcgatc gagatcgcgc aacccctgct cgactccgga aaccaccacc
     2881 tgcagctcga tctgccggcg caggacgtgg cgttgttcgt cgaccgggtg cggctgtcgc
     2941 aggtgttcgc caacctgctc aacaacgcgg ccaagtactc
//
LOCUS       DATIQC010000017         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_354173, whole genome shotgun sequence.
ACCESSION   DATIQC010000017 DATIQC010000000
VERSION     DATIQC010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354173"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1024)
                     /gene="glmM"
                     /locus_tag="VLM17_00360"
     CDS             complement(<1..1024)
                     /gene="glmM"
                     /locus_tag="VLM17_00360"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_function: GO:0016868 - intramolecular
                     phosphotransferase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HSR64047.1"
                     /translation="MTRKYFGTDGIRGRVGEGAISADFVLRLGNAYGFALPRNTWRKP
                     LVIIGKDTRISNYMFEAALEAGLVAAGVDVQLMGPMPTPAVAHLTRSLRADGGIVISA
                     SHNPHHDNGIKFFSAAGEKLDDDTELAIEAALDQPFRTVASAELGKAVRTRDALGRYI
                     EHCKNAVPKGFDLGGLRIAMDCANGATYQLGPLVLRELGARVEAIGIDPNGVNINEGV
                     GSTHPDTLAAHVRATGSDLGIAFDGDGDRVLFVDRDGAVCDGDDILYLLATDWQASGR
                     LRGAVVGTLMSNFGLERALGERGIPFVRTRVGDRYVHQGLLQHGGVLGGETSGHILCL
                     DRANTGD"
     gene            complement(1064..1951)
                     /gene="accD"
                     /locus_tag="VLM17_00365"
     CDS             complement(1064..1951)
                     /gene="accD"
                     /locus_tag="VLM17_00365"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HSR64048.1"
                     /translation="MSWLKKLMPARIRTEPATGRKRSVPEGLWEKCGSCGTVLYRPEL
                     EDNLEVCPKCGHHMPIRGRMRLDRFLDAGSGVEIAAGLGPVDVLKFRDQKRYGDRIKA
                     AQKSTGERDALIAMEGTLKARPIVACAFDFAYMGGSMGSVVGERFARAAERALEIGAP
                     LVCFSATGGARMQESLFSLMQMAKTSAALGRLRAAGLPYISVMTHPTTGGVSASLAML
                     GDVNMAEPGALIGFAGPRVIEQTVRETLPEGFQRSEFLLEHGAIDQICDRRELRDRIA
                     DLVALMLKQPKPADDVEAA"
BASE COUNT          290 a          745 c          780 g          305 t
ORIGIN      
        1 cgtcgccggt gttggcgcgg tccaggcaca ggatgtggcc ggacgtctcg ccgccgagca
       61 cgccgccgtg ctgcagcagg ccctggtgca cgtagcgatc gcccacccgg gtgcgcacga
      121 agggaatgcc gcgctcgccg agcgcgcgct cgagtccgaa gttgctcatc agcgtgccga
      181 ccaccgcccc gcgcaggcgc ccgctggcct gccagtccgt ggccagcagg tagaggatgt
      241 cgtcgccgtc gcagaccgcg ccgtcgcggt cgacgaacag cacgcggtcg ccgtcgccgt
      301 cgaaggcgat gccgaggtcg gaacccgtcg cgcgcacgtg cgcggccagc gtgtccggat
      361 gggtcgagcc gacgccctcg ttgatgttga cgccgttcgg atcgatgccg atcgcctcga
      421 cgcgcgcgcc gagctcgcgc aggacgagcg ggccgagctg gtaggtggcg ccgttggcgc
      481 agtccatcgc gatgcgcagg ccgccgaggt cgaacccttt cggcaccgcg ttcttgcaat
      541 gctcgatgta gcggccgagc gcgtcgcggg tgcgcaccgc cttgccgagt tcggccgagg
      601 cgacggtgcg gaagggctgg tcgagcgcgg cctcgatggc gagttcggtg tcgtcgtcga
      661 gcttctcgcc ggcggcggag aagaacttga tgccgttgtc gtggtgcgga ttgtgcgagg
      721 ccgagatgac gatgccgccg tcggcgcgca gcgagcgcgt caggtgcgcg acggccggcg
      781 tcggcatcgg ccccatcagc tgcacgtcca cgccggcggc gaccagcccg gcctcgagcg
      841 cggcctcgaa catgtagttc gagatgcgcg tgtccttgcc gatgatcacc agcggcttgc
      901 gccaggtgtt gcgcggcagg gcgaagccat aggcgttgcc caggcgcagg acgaagtcgg
      961 ccgagatcgc gccctcgccc acccgtccgc ggatgccgtc ggtgccgaaa tacttgcggg
     1021 tcatgcgtgg tcccggtctt ccccggcgtc ctgccggatt ctgtcaggcg gcctcgacgt
     1081 cgtcggccgg cttgggctgc ttcagcatca gcgcgacgag gtcggcgatg cggtcgcgca
     1141 gctcgcggcg gtcgcagatc tggtcgatcg cgccgtgctc gagcaggaac tccgaacgct
     1201 ggaagccttc gggcagggtc tcgcgcacgg tctgctcgat cacgcgcgga ccggcgaagc
     1261 cgatcagcgc gcccggctcg gccatgttga cgtcgccgag catcgccagc gaggccgaca
     1321 cgccgccggt ggtcggatgc gtcatcaccg agatgtacgg caagccggcc gcgcgcaggc
     1381 ggccgagcgc ggcggaggtc ttggccatct gcatcagcga gaacaggctc tcctgcatgc
     1441 gggcgccgcc ggtcgccgag aagcacacca gcggcgcccc gatctccagc gcgcgctcgg
     1501 cggcgcgggc gaagcgctcg ccgaccaccg accccatcga gccgcccatg taggcgaagt
     1561 cgaacgcgca ggcgacgatc ggacgcgcct tcagcgtgcc ctccatcgcg atcagcgcat
     1621 cgcgctcgcc ggtggacttc tgcgcggcct tgatgcggtc gccgtagcgc ttctggtccc
     1681 tgaacttgag cacgtccacc ggaccgagcc cggcggcgat ctcgaccccg ctgccggcat
     1741 cgaggaaccg gtccaggcgc atgcggccgc ggatcggcat gtggtggccg cacttcgggc
     1801 agacctcgag gttgtcctcg agctccggcc ggtacagcac ggtgccgcaa ctgccgcact
     1861 tctcccacaa cccctcgggc acgctgcgct tgcggccggt ggccggctcg gtgcggatgc
     1921 gcgcgggcat gagtttcttc agccaggaca tgcgtgggaa gctcgcggtg gatcggccgg
     1981 acagtttacc gcagggcgct caggcggccg ccggcgcggc gtcgagcgcg gcgcgcaagg
     2041 gggcgaggaa ggcgtcggcg cgcgccgcgg cggcacccgg atcgccaccg gccagcgccg
     2101 cgaccagcgc gctgccgacc
//
LOCUS       DATIQC010000018         3910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_248247, whole genome shotgun sequence.
ACCESSION   DATIQC010000018 DATIQC010000000
VERSION     DATIQC010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248247"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..1134)
                     /locus_tag="VLM17_00370"
     CDS             complement(151..1134)
                     /locus_tag="VLM17_00370"
                     /inference="COORDINATES: protein motif:HMM:NF004785.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HSR64049.1"
                     /translation="MWPPSGPRRMLPLVFALAAWCALAASDGLQPGAFTWAPELSPRG
                     PLVVLVRLQAQRAYVYRNGIRIGVSTVSTGRQGFETPPGIYTVLEKQREHRSNLYDDA
                     PMPYMQRLTWDGMALHGGRVPGYPASHGCIRLPEKFAEPLFLATRPGAVVVVEAEGAA
                     PTIESPGLFARNGPAASPGSQPAAAFVWQPGLAPDGPVSIVVSTRDRQVLVLRNAVRI
                     GQSGFAYDGPAPAGTGAWVLLEGPPDGAIGTAAQPPRLRWMRVATSTTPDDVASEPLD
                     PARLSLPLDFARALYAVLAPGTTVVVTDESFVPGPADVPVLQGDAMPGPRE"
     gene            complement(1204..1899)
                     /locus_tag="VLM17_00375"
     CDS             complement(1204..1899)
                     /locus_tag="VLM17_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019659426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase catalytic domain
                     family protein"
                     /protein_id="HSR64050.1"
                     /translation="MASRIHRSALAFLLLSSAAAAAPATAPVAPLHAPGLDANVLSLA
                     MAAGDCAERRGLVGPARRLAVIDYSLPSKQPRMWVFDLAQRQLLYTELVAHGRGSGEA
                     RATLFSNDDGSYRSSLGLFSTAETYVGGNGYSLRMDGLEPGFNDRARERAIVMHGAWY
                     VDPALASRTGRLGRSQGCPAVRPQVAHQLIDTLKGGQLVFAYYPDADWLRHSTLLHCS
                     APASRGGSGLGQP"
     gene            complement(1951..2091)
                     /locus_tag="VLM17_00380"
     CDS             complement(1951..2091)
                     /locus_tag="VLM17_00380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64051.1"
                     /translation="MEPAAVRARDLVQRGPAAGSGDAWMNGGDMGSWFLRAFRRDRDL
                     RP"
     gene            complement(2109..3095)
                     /locus_tag="VLM17_00385"
     CDS             complement(2109..3095)
                     /locus_tag="VLM17_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017464146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HSR64052.1"
                     /translation="MTAMVLERPGLPLAATTRPLPAPSAGEVRLRIEACGVCRTDLHI
                     ADGELPQAVYPVVPGHEIVARVEALGAGVRAPAIGERVGVPWLAQACGHCGYCREGRE
                     NLCDDARFTGCSRDGGFATHVLAEADFCIRLDALAADAVHVAPLLCAGLIGWRALRAA
                     GPVERLGLYGFGASAHLVAQLARSRGTAVHAFTRPGDDATQAFARGLGACWAGGSDEP
                     PPRPLAAAILFAPVGELVPVALRAVRKGGRVVCAGIHMSDIPRFPYRLLWEERQLLSA
                     ANLTRADAAGFLPAAAAAGVVARVRPYPLAQANAALDDLRHGRLEGAAVLLP"
     gene            complement(3125..3682)
                     /locus_tag="VLM17_00390"
     CDS             complement(3125..3682)
                     /locus_tag="VLM17_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018973041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64053.1"
                     /translation="MRLQPTSGAKCATPRWPHILADGRHVVIRPLASGDREAERAFIS
                     SLSSEARHFRFGCAIGEPGDPLLDQLTRMDATREVAFAAVAAGADAGDGRDRIVGISR
                     YAADADGRRCECAVVVADDWQHHGLGVLLMERLIETARTRGIRQMYSVDPAANAAMRE
                     LAAHLGFHTRRNPEDATEVIHELDL"
BASE COUNT          558 a         1405 c         1457 g          490 t
ORIGIN      
        1 cataagctat tgattgcaaa gatctgcaac aataggcaac agcccggtgg taagacttaa
       61 aatccctcac ccgcaagggt atgtgggttc gatccccact ccgggcacca cgccaggccg
      121 gcgcgttggt tccgcgcgcg cattcgacgt tcattcgcgc ggcccgggca tggcatcgcc
      181 ctgcagcacc ggcacgtccg ccggcccggg cacgaaggat tcgtcggtga ccaccaccgt
      241 cgtgcccggc gctagcaccg cgtacagggc gcgggcgaag tccaacggca gcgacaggcg
      301 cgcgggatcg agcggctcgc tcgcgacatc gtcgggcgtc gtggacgtcg ccacccgcat
      361 ccagcgcagg cgcggcggtt gcgcggcggt tccgatcgct ccatcgggcg gtccttcgag
      421 cagcacccat gcgccggttc cggcgggcgc ggggccgtcg taggcgaagc cggactggcc
      481 gatgcgcacg gcgttgcgca gcaccagcac ctgccggtcg cgcgtgctca ccacgatgct
      541 gacggggcca tcgggtgcca gccccggttg ccatacgaag gctgcagccg gctgcgagcc
      601 gggcgacgcg gccgggccgt tccgtgcgaa caacccgggt gattcgatcg tgggtgcggc
      661 gccctccgcc tcgaccacca cgacggcgcc cggccgcgtg gcgaggaaca gcggttcggc
      721 gaatttctcc ggcagccgga tgcagccgtg cgaggcggga tagcccggca cgcggcctcc
      781 atgcaacgcc atgccgtccc aggtcagccg ctgcatgtag ggcatcggcg cgtcgtcgta
      841 gaggttggag cggtgctcgc gctgcttttc cagcacggtg tagatgccgg gcggtgtctc
      901 gaacccctgg cgcccggtgc tcaccgtcga cacgccgatg cggatgccgt tgcggtacac
      961 gtaggcacgt tgcgcctgca gccgcaccag caccaccagc ggcccgcgcg gcgacagctc
     1021 cggcgcccac gtgaatgcac ccggctgcag gccatcgctc gccgccaggg cgcaccacgc
     1081 cgccagcgcg aacaccagcg gcagcatgcg acgcgggccg gaaggaggcc acatgcgcac
     1141 agcttgcgcc ctttgcgcgt gcgcggtttg atcggcgtca accgcggcgc cgggacgccg
     1201 cggtcagggc tggccgaggc cgcttccgcc gcgggaggcc ggcgccgagc agtgcagcag
     1261 cgtggaatgc cggagccagt cggcatccgg gtaatacgcg aacaccagct ggccgccctt
     1321 gagcgtgtcg atcagctggt gcgcgacctg cggccgcacc gccgggcagc cctggctgcg
     1381 gccgaggcgg ccggtgcggc tggccagcgc cggatcgacg taccacgcgc cgtgcatgac
     1441 gatggcccgc tcgcgcgcgc ggtcgttgaa accgggttcc aggccgtcca tgcgcagcga
     1501 atagccgttg ccgccgacgt aggtttccgc ggtggaaaag aggccgaggc tggagcggta
     1561 gctgccgtcg tcgttggaga acagggtcgc gcgcgcttcg ccgctgccgc gaccgtgggc
     1621 gaccagctcg gtgtagagca actgacgctg ggcgaggtcg aacacccaca tccgcggctg
     1681 cttcgacggc aggctgtaat cgatcaccgc cagccggcgt gccgggccca ccagtccgcg
     1741 tcgttcggcg cagtcgccgg ccgccatggc cagcgacagg acgttggcat cgaggccggg
     1801 ggcgtgcagc ggagccaccg gcgcggtcgc cggggccgcg gcggccgccg acgacagcag
     1861 aaggaacgcg agcgcggaac gatgaatgcg ggacgccatg caggtccgtc gaaagcggag
     1921 ccgccactgt cggtggcgtg gcagggcggg tcaaggacgc aggtcgcgat cgcgcctgaa
     1981 cgcgcgcagg aaccagctcc ccatgtcgcc accgttcatc cacgcatcgc cgctacctgc
     2041 tgctggaccg cgctggacga ggtcgcgcgc gcgcacggcc gctggctcca tggggctgcg
     2101 gcgcttcatc aaggcagcag cacggcggcc ccctcgaggc ggccgtgacg caggtcgtcg
     2161 agcgccgcgt tcgcctgcgc gagcgggtag ggccgcaccc gcgcgaccac gcccgccgcg
     2221 gccgccgcgg gcaggaagcc ggcggcatcg gcgcgcgtga ggttggcggc cgacagcagt
     2281 tgccgctcct cccacagcag ccgataggga aagcgcggga tgtcgctcat gtggatgccg
     2341 gcgcagacca cgcgtccgcc cttgcgcacc gcgcgcaagg cgacgggcac gagctcgccg
     2401 accggcgcga acaggatcgc ggcggcgagc ggccgcggcg gtggctcgtc ggaaccgccg
     2461 gcccagcagg cgccgagccc gcgtgcgaac gcctgcgtcg cgtcgtcgcc cgggcgggtg
     2521 aaggcgtgca ccgccgtgcc ccgcgagcgc gcgagctggg cgacgaggtg cgccgaggcg
     2581 ccgaagccgt acaggccgag ccgctcgacc ggccccgccg cccgcagcgc gcgccagccg
     2641 atcaggccgg cgcacagcag gggcgcgacg tgcacggcat cggcggcgag cgcgtcgagg
     2701 cggatgcaga agtcggcttc cgccagcacg tgcgtggcga agccgccgtc gcgcgagcag
     2761 ccggtgaagc gcgcgtcgtc gcacaggttc tcgcgtccct cgcggcagta cccgcaatgg
     2821 ccgcaggcct gcgccagcca gggcacgccg acgcgttcgc cgatggcggg tgcgcgcacg
     2881 cccgcgccga gcgcctcgac gcgggcgacg atctcgtggc cgggcacgac ggggtacacc
     2941 gcctgcggca gttcgccgtc ggcgatgtgc aggtcggtgc gacagacacc gcaggcttcg
     3001 atgcgcaggc gcacctcgcc cgcggagggc gccggcagcg gccgcgtggt ggcggccagc
     3061 ggcagcccgg gccgctccag caccatggcg gtcatcgtcg gcatgcccgc cgcgccgcgt
     3121 cccgctacag gtcgagttcg tggatcactt cggtcgcgtc ctccggattg cgccgggtgt
     3181 ggaagccgag gtgggccgcg agttcccgca tcgccgcgtt cgccgcggga tcgaccgagt
     3241 acatctgccg gatgccgcgc gtccgcgcgg tctcgatcag gcgttccatc agcagcacgc
     3301 ccaggccgtg gtgctgccag tcgtcggcga cgacgacagc gcactcgcag cgccggccgt
     3361 cggcgtcggc ggcataacgg ctgatgccga cgatgcggtc ccggccgtcg ccggcgtccg
     3421 cgccggccgc gaccgcggcg aaggcgacct cgcgcgtggc gtccatccgg gtcagctggt
     3481 cgagcagcgg gtcgccgggt tccccgatcg cgcagccgaa gcggaaatgg cgggcctcgc
     3541 tggagaggct cgagatgaat gcgcgctccg cctcgcgatc gccggacgcc agcggccgga
     3601 tcaccacgtg gcggccgtca gcaaggatgt gtggccagcg cggcgtggcg cacttcgcgc
     3661 cggaggtggg ctgcaggcgc atggcgtgct ccgcgtcgtg tccctgttcc aagcaacgca
     3721 ggtcatgcgg ccgtcccggt cagccggcgg agcgcgcgca ccgtggccgg accgatgccg
     3781 tcgtgcgcgc cgccgcccag tcggctggcg caccaccgca aggaggagtc gccatgttgc
     3841 cgaaggacct ggtggtgttc ctcgaacagg aaccggacta caccgcgcgc ctggcgttcg
     3901 cgaccggcct
//
LOCUS       DATIQC010000019         3170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_495532, whole genome shotgun sequence.
ACCESSION   DATIQC010000019 DATIQC010000000
VERSION     DATIQC010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495532"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..2963)
                     /locus_tag="VLM17_00395"
     CDS             complement(93..2963)
                     /locus_tag="VLM17_00395"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HSR64054.1"
                     /translation="MTNALAPSYDPSQFEARLYEEWERSGCFKPRGTGEPYVILLPPP
                     NVTGTLHMGHAFQHTLQDALVRYHRMRGFDTLWQLGTDHAGIATEMVVARNLAREGNG
                     ETRDSLGRDGFIAKVWEWKQQSGGTIERQMRRLGSSGDWSRGVFTMDPMAAEAVTEAF
                     VRLHEQGLVYRGQRLVNWDPVLKTAISDLEVVSEEEDGFLWSISYPLADGSGALTVAT
                     TRPETMLGDAAVMVHPEDGRYAHLVGRAVRLPLTGREIPVIADAYVDREFGTGVVKVT
                     PAHDFNDYAVWQRHVNTGVFDALPNRGLINIFTPQAQVVGRGAGSAGDHAVPDANALL
                     NVPEAYHGLDRYDARKAVLADLEAQGLLVETKPHKLQVPRGDRTGQVIEPYLTDQWFV
                     KMDGLAARGLELVEGSDGKPGSIRFVPSNWINTYRHWMQNIQDWCISRQLWWGHRIPA
                     WYDAQGNAYVGRDEAEVRARHGLGDEMALRQDADVLETWFSSALWPISTMGWPDPEAM
                     QARGFERYVPSSVLVTGFDIIFFWVARMIMATDHFVGEVPFRDVYITGLVRDKDGQKM
                     SKSKGNILDPLDIIDGISVDALVAKRTTGLMQPKMAEKIEKATRREFPDGIAAHGADP
                     LRFTMAALAGPGRDIKFDLGRAEGYKNFCNKLWNATRFVLMNTEGAAFAGAPHPVTDA
                     ERWILARLAAVSAEVQEHFAAYRFDLLAQALYEFAWNTFCDWFVELAKPALTGDDAAA
                     AASTRHTLLYVLEALLRLLHPLIPFVTEELWRQVAPRLGIDQATIMLRPYPKAGDVAG
                     DFAAAESDVEWLKAMVSTLRRIRSELNVPPSKQVALLLQGGDAADAARVERFAAQLGF
                     LNRLKRIEAIAGDPPPAATGVVGELRLFVPLAGLVDLDAERARLDKELKRVEGEIAKC
                     RNKLASDTFVQNAPAAVVEQERQRLADWTTQHQALAAQRARL"
BASE COUNT          439 a         1082 c         1137 g          512 t
ORIGIN      
        1 gtagaaggcg ttgtaggcat cccacagcgg cgtccatcgc gcgcggtcct gcgccaccac
       61 cgcgcgcacg accacggcgg gcgccgcgcc gctcacaggc gcgcgcgctg cgcggcgagc
      121 gcctggtgct gcgtggtcca gtcggcaagg cgctggcgct cctgctcgac caccgccgcc
      181 ggcgcgttct gcacgaacgt gtcgctggcg agcttgttgc ggcacttggc gatctcgcct
      241 tcgacgcgct tgagctcctt gtccaggcgc gcgcgttcgg cgtcgaggtc gaccaggcct
      301 gccaggggca cgaacaggcg cagctcgccg accacgccgg tcgcggcggg cggcggatcg
      361 cccgcgatcg cttcgatgcg cttgagacga ttgaggaagc ccagctgtgc ggcgaagcgt
      421 tcgacgcgcg cggcatcggc ggcgtcgccg ccctgcagca gcagcgcgac ctgcttcgac
      481 ggcggcacgt tgagctcgct gcggatgcgg cgcaacgtcg agaccatcgc cttcagccac
      541 tcgacgtcgg actcggccgc cgcgaaatcg ccggcgacgt caccggcttt cgggtacggc
      601 cgcagcatga tcgtggcctg gtcgatgccc aggcgcggcg cgacctgccg ccacagctcc
      661 tcggtcacga agggaatgag cggatgcagc aggcgcagca gcgcctcgag cacgtacaag
      721 agcgtgtggc gcgtgctcgc ggcggccgcg gcatcgtcgc cggtgagggc cggcttggcg
      781 agctcgacga accagtcgca gaacgtgttc caggcgaact cgtacagcgc ctgcgcgagc
      841 aggtcgaagc ggtaggcggc gaagtgctcc tgcacctcgg cgctgacggc ggcgaggcgc
      901 gcgaggatcc agcgctcggc gtcggtcacc gggtgcggcg cgccggcgaa cgccgcgccc
      961 tcggtgttca tcagcacgaa gcgcgtcgcg ttccacagct tgttgcagaa attcttgtag
     1021 ccctcggcgc ggccgaggtc gaacttgatg tcgcggccgg ggccggcgag cgcggccatg
     1081 gtgaagcgca gcgggtcggc gccgtgcgcg gcgatgccat ccgggaattc cctgcgcgtg
     1141 gccttctcga tcttctcggc catcttcggc tgcatcagcc ccgtcgtgcg cttggcgacc
     1201 agggcgtcga cgctgatgcc gtcgatgatg tcgagcggat cgaggatgtt gcccttcgat
     1261 ttcgacatct tctgcccgtc cttgtcgcgg acgaggccgg tgatgtagac gtcgcggaac
     1321 ggcacctcgc cgacgaagtg gtcggtcgcc atgatcatgc gcgcgaccca gaagaagatg
     1381 atgtcgaagc cggtgacgag cacgctcgag ggcacgtagc gttcgaagcc gcgcgcctgc
     1441 atcgcctccg ggtccggcca gcccatggtg ctgatcggcc acagcgcgga ggagaaccag
     1501 gtctcgagca cgtcggcgtc ctggcggagc gccatctcgt cgccgagccc gtggcgcgcg
     1561 cgcacttcgg cctcatcgcg accgacgtag gcgttgccct gcgcgtcgta ccacgcgggg
     1621 atgcggtggc cccaccacag ctggcgcgag atgcaccagt cctggatgtt ctgcatccag
     1681 tggcggtagg tgttgatcca gttcgacggc acgaagcgga tcgaacccgg ctttccatcg
     1741 ctaccttcga cgagctcgag gccgcgcgcg gcgaggccgt ccatcttcac gaaccactgg
     1801 tcggtgaggt agggctcgat cacctggccg gtgcggtcgc cgcgcggcac ctgcagcttg
     1861 tgcggcttcg tctcgaccag caggccctgc gcctcgaggt cggccagcac ggccttgcgc
     1921 gcgtcgtagc ggtcgaggcc gtggtaggcc tcgggcacgt tgagcagcgc attcgcgtcc
     1981 ggcacggcgt ggtcgcccgc gctgcccgcg ccgcggccca cgacctgcgc ctgcggggtg
     2041 aagatgttga tcaggccgcg gttgggcagc gcatcgaaca cgccggtgtt cacgtgccgc
     2101 tgccacaccg cgtagtcgtt gaagtcgtgc gcgggcgtca ccttgaccac gccggtgccg
     2161 aattcgcggt cgacgtaggc atcggcgatc accgggatct cgcgtccggt cagcggcagg
     2221 cgcacggccc tgccgaccag gtgcgcgtag cgcccgtctt ccggatgcac catcaccgcg
     2281 gcgtcgccga gcatggtttc ggggcgggtg gtggcgacgg tcagcgcgcc gctgccgtcg
     2341 gcgagcggat acgagatcga ccacaggaag ccgtcctcct cctcgctcac gacctcgagg
     2401 tcggagatcg cggtcttcag caccggatcc cagttgacca ggcgttggcc gcggtagacc
     2461 aggccctgct cgtgcaggcg cacgaaggct tcggtgaccg cctcggccgc catcgggtcc
     2521 atggtgaaca cgccgcgcga ccagtccccc gacgagccca ggcggcgcat ctgccgttcg
     2581 atggtgccgc cggactgctg cttccactcc cagaccttgg cgatgaaacc gtcgcgcccg
     2641 agcgaatcgc gcgtctcgcc gttgccttcg cgggcgaggt tgcgcgcgac caccatctcg
     2701 gtggcgatgc cggcgtggtc ggtgcccagc tgccacagcg tgtcgaagcc gcgcatgcgg
     2761 tggtagcgga ccagcgcgtc ctgcagcgtg tgctggaagg cgtggcccat gtgcagggtg
     2821 ccggtgacgt tcggcggcgg cagcaggatg acgtagggct cgcccgtgcc gcgcggcttg
     2881 aagcatccgc tgcgttccca ttcctcgtag aggcgggctt cgaattgcga gggatcgtag
     2941 ctgggggcga gggcgttggt catcgtggcg cttgcaggtc ggcctccctc tcccgcttgc
     3001 gggagagggc cggggtgagg gtgttttgcc cgagggccct catccgccct tcgggcacct
     3061 cctcccgcag gcgggagaag gaacatcaca tgtcgtgctt gttcaactcg aacccgcgcg
     3121 cctggtactg cttccagcgc gcgcgcagcg ggccgcgcgc ctcggcgtcg
//
LOCUS       DATIQC010000020         3481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_531011, whole genome shotgun sequence.
ACCESSION   DATIQC010000020 DATIQC010000000
VERSION     DATIQC010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3481
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531011"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..1183
                     /gene="moeB"
                     /locus_tag="VLM17_00400"
     CDS             56..1183
                     /gene="moeB"
                     /locus_tag="VLM17_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HSR64055.1"
                     /translation="MAVRELSVTEALARQRAGALLVDVRAAHERELGMAEGARGIARE
                     DLEAEPGACLPDPDAELLLICQSGRRSQLAAAALQACGYRNVRSVAGGTSAWEAASLP
                     MARPALDADFAERYSRHLRLPEVGLGGQRRLQAARVLLVGAGGLGSPAAFYLAAAGVG
                     TLRLVDDDVVDRSNLQRQILHADARIGMPKVESAAQALSALNPRTRIEAMRERVTGGN
                     VEAVLDGVDVVVDGADNFPARYLLNDACVKLGKPLVYGAVHRFEGQVSVFDAGRARGV
                     APCYRCLFPEPPPPEAAPNCSEAGVLGVLPGVVGLLQATEAIKLLLGIGHPLSGRLLQ
                     FDALAMRFRETRLSPDPECALCAPGRAFPGYIDYARFCAGG"
     gene            complement(1226..1999)
                     /locus_tag="VLM17_00405"
     CDS             complement(1226..1999)
                     /locus_tag="VLM17_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64056.1"
                     /translation="MSVNESRDMNRDPITGTPGSHPLGTGVGAAGGALAGAAIGSLFG
                     PIGTLVGGALGTIGGGAAGHTAAERVDPTGEATYWRENVSTRPYYKSTYDFDTDYAPA
                     YAYGSDARARHADRRWDDRLENDLASGWDKAKAKSRLTWAEAKDAVRDAWNRDDRTYR
                     TYEASDRYYSQQFGSRDRDARYDYETDYRPAYRYGTWARTAYPERQWDSSVESDLERG
                     WDAAKGTSRMAWNDAKGTVREAWDGLERAIPGDSDHDGL"
     gene            2180..2773
                     /locus_tag="VLM17_00410"
     CDS             2180..2773
                     /locus_tag="VLM17_00410"
                     /inference="COORDINATES: protein motif:HMM:NF015596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64057.1"
                     /translation="MQRAATLALLAIAIGTAATGCKREAPAGGNEPAATATAATTPGA
                     QAPPPAATQPPASAENGMPSAAQSGMPATENGFDLDVAESADHGKYIVDGTGKTVYML
                     AKDNGTTSTCQNACATEWPPLLAQGEPKTMDPELSDGDIGVIQRGDGTQQVTFAGHPL
                     YHYARDTAAGQLNGAGKHDEFGDWSLLSPEGKPLAAK"
     gene            2895..3335
                     /locus_tag="VLM17_00415"
     CDS             2895..3335
                     /locus_tag="VLM17_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64058.1"
                     /translation="MKLAARTMLATALLACAGVVGAQDHPYSEGPVVEVTAVKLQDGQ
                     FENYLQFLDTGWKSVMEGAKKAGIVKDYAVYGAEAHNPQEADLYLVVTYPNMAVFDGM
                     QKRMDAITAKATGMTVPQSEEASGKRTVMRTILGQELLRELRLR"
BASE COUNT          475 a         1286 c         1220 g          500 t
ORIGIN      
        1 tcggcggtcc ggcccgcggg ccttccggcg ccgcgcgagg cgcgataatc ccgccatggc
       61 cgtgcgcgaa ctgtccgtca ccgaagcact cgcgcgccag cgcgccggcg cgctcctcgt
      121 cgacgtgcgt gccgcgcacg agcgcgaact cggcatggcc gaaggcgcgc gcggcatcgc
      181 gcgcgaggac ctcgaggccg aaccgggtgc gtgcctcccc gatcccgacg cggaactgct
      241 gctcatctgc cagagcggac ggcgctcgca actcgcagcc gcggcgctgc aggcctgcgg
      301 ctatcgcaac gtgcggtcgg tggccggcgg caccagcgcc tgggaggccg cgtcgttgcc
      361 catggcgcgt cccgccctgg atgccgactt cgccgagcgt tactcgcgcc acctgcgcct
      421 ccccgaagtg ggcctcggcg gacagcggcg cctgcaggcc gcgcgcgtgc tgctggtggg
      481 cgccggcggg ctcgggtccc cggccgcgtt ctacctcgcc gcggccggcg tcggcaccct
      541 gcgcctggtg gacgacgacg tcgtcgaccg cagcaacctg cagcggcaga tcctgcatgc
      601 cgatgcgcgc atcggcatgc cgaaggtgga gtccgccgcg caggcgctgt ccgcgctgaa
      661 cccgcgcacc cgcatcgaag ccatgcgcga gcgcgtcacc ggcggcaacg tcgaggcggt
      721 gctcgacggg gtcgacgtgg tggtcgacgg cgccgacaac ttccccgcgc gctacctgct
      781 caacgacgcc tgcgtgaagc tcggcaagcc gctggtgtac ggcgcggtgc accgcttcga
      841 aggccaggtg tcggtgttcg acgccggtcg cgcgcgcggc gtcgccccgt gctaccgctg
      901 cctgttcccg gagccaccgc cgcccgaggc cgcgcccaac tgttcggagg ccggcgtgct
      961 cggggtgctg cccggggtgg tcggcctgct gcaggcgacc gaggcgatca agctgctgct
     1021 cggcatcggc cacccgctca gcgggcggct gctgcagttc gacgcgctcg cgatgcgctt
     1081 ccgcgagacg cgcctgtcgc ccgatccgga gtgcgcgttg tgcgcgccgg gaagggcgtt
     1141 tcccggctac atcgactacg cgcgcttctg cgccggcggt tgaagcgcgc ggacgcggcg
     1201 catccgcgcg ctccgatgtc ccgccttaca ggccgtcgtg gtcgctgtcg ccgggaatcg
     1261 cacgctccag gccgtcccat gcctcgcgca cggtgccctt ggcgtcgttc cacgccatgc
     1321 gcgacgtgcc cttggccgcg tcccagccgc gttccaggtc ggactcgacg ctgctgtccc
     1381 actgccgctc cgggtacgcg gtgcgcgccc aggtgccgta gcggtacgcc ggccggtagt
     1441 cggtctcgta gtcgtagcgc gcgtcgcgat cgcggctgcc gaactgctgg ctgtaataac
     1501 gatcgctcgc ctcgtaggtg cggtaggtgc ggtcgtcgcg gttccatgcg tcgcgcaccg
     1561 cgtccttcgc ttccgcccag gtcaggcgcg acttcgcctt ggccttgtcc cagccgctgg
     1621 ccaggtcgtt ctcgaggcgg tcgtcccagc ggcgatcggc atggcgcgca cgggcgtcgc
     1681 tgccgtaggc gtaggcgggc gcgtagtcgg tatcgaaatc gtaggtcgac ttgtaatacg
     1741 ggcgcgtcga cacgttctcg cgccagtagg tcgcttcccc cgtcggatcg acgcgctcgg
     1801 cggccgtgtg ccccgccgcg ccgccgccga tcgtaccgag cgcgccgccc accagcgtac
     1861 cgatcggacc gaacagcgat ccgatcgcgg cgcccgcgag cgcaccaccg gccgcgccca
     1921 cgccggtgcc aagcggatgc gaaccgggcg tgccggtgat cggatcgcga ttcatgtcgc
     1981 ggctttcgtt cacgctcatg gaattctcct gtcgatgaca tcggcggtcg gtgccgaccc
     2041 gccgcactct gccgccgctg tcgttcagtg catgtgtgcg gatgcgactt tcgctgcgct
     2101 tcgcgcattc agggcctcct cacggatcgg cgacggcgcg cggcagagcc ttgcgccatt
     2161 gcgccgacgg agaatccaga tgcaacgtgc cgccacgctc gcgctgctcg ccattgcgat
     2221 cggcaccgcc gccaccggct gcaagcgcga ggcgcccgcc ggtggaaacg aacccgccgc
     2281 cacggccacc gccgcgacca cgcccggcgc gcaggcgccg ccgcccgcgg cgacgcagcc
     2341 acccgcgtcc gccgaaaacg gcatgccgtc cgcggcccag tccggcatgc cggcgaccga
     2401 gaacggtttc gacctcgacg tcgccgaatc cgccgaccac ggcaagtaca tcgtcgacgg
     2461 caccggcaag accgtctaca tgctcgccaa ggacaacggc accaccagca cctgccagaa
     2521 cgcatgcgcg acggagtggc cgccgctgct cgcgcagggc gagccgaaga cgatggatcc
     2581 cgagctctcg gacggcgaca tcggcgtgat ccagcgcggc gacgggaccc agcaggtcac
     2641 cttcgccggc cacccgctgt accactacgc gcgggacacc gccgccgggc agctcaatgg
     2701 cgcgggcaag cacgacgagt tcggcgactg gtcgctgctg tcgccggagg gcaagccgct
     2761 cgcggcgaag tgagcgccgc ctgccgctgg tcggaaacct gaccggccgc ctgccggcgc
     2821 ctcgttgcgt cggttgccgc ggcatcgcgc ccggcgccgg cggtcgccgc cggcttccct
     2881 gcgggagcac ggtcatgaaa cttgcggcac ggacgatgct ggccacggca ctgctggcct
     2941 gcgcgggcgt ggtgggcgcc caggaccatc cctacagcga gggaccggtg gtggaggtca
     3001 ccgcggtcaa gctgcaggac ggccagttcg agaattacct gcagttcctc gacaccggct
     3061 ggaagtcggt gatggagggc gcgaagaagg ccggcatcgt gaaggactac gctgtgtacg
     3121 gggcggaggc gcacaacccg caggaagcgg acctgtacct cgtggtgacc tatcccaaca
     3181 tggccgtgtt cgacggcatg cagaagcgca tggacgcgat caccgccaag gccaccggca
     3241 tgaccgtgcc gcagagcgag gaggccagcg gcaagcgcac cgtcatgcgc accatcctcg
     3301 gccaggagct gctgcgcgaa ctgcgcctca ggtaacccgt gccccggtcc gcgggtacca
     3361 tcggccccgg accggggggg cacatggaca tcgaggcatc gcaggcaccg tcgtttcccg
     3421 cgctggacgc agccgatcgt ggtgcgatcg acgcgctcgc cgcggccttc ttcgccgcgt
     3481 t
//
LOCUS       DATIQC010000021         1646 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_36417, whole genome shotgun sequence.
ACCESSION   DATIQC010000021 DATIQC010000000
VERSION     DATIQC010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36417"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            423..1247
                     /locus_tag="VLM17_00420"
     CDS             423..1247
                     /locus_tag="VLM17_00420"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSR64059.1"
                     /translation="MQDLLVRATSLGDWDAGVRCAARIAASQRAALTALYVVPGGLPA
                     MPASAWDGGEMAAAYAVELAREVREAEQRAPAFAAWASSMGVPHPTWLASAGEAADAF
                     AYVGNWHDLLVLPLDNDGEDPWSAAGGVARIVLRAALPCLVLPRGADVPERCDVAAVA
                     FNGSVESIRALHAALPLLREARRVVMLAGDRQQPLAPLPDFPLEAWCERHLPHVEYAP
                     LDPGAEGAGILQAAQAAGAQLLAMGAYGRSRFSEWVLGGVTRHMLLNAGIPLLMRH"
     gene            1387..>1646
                     /locus_tag="VLM17_00425"
     CDS             1387..>1646
                     /locus_tag="VLM17_00425"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSR64060.1"
                     /translation="MNTAQTLAALRALAHESRLAAFRALVEAGHEGLAVGALRERLQL
                     PPATLTAHLNVLRAAGLVADAREGRSIRVRADYARMDALIGYL"
BASE COUNT          209 a          624 c          585 g          228 t
ORIGIN      
        1 ctgggcagcg atcaccacgc ccaccagcat gccgatcacc ccccagatca gcgtgaccac
       61 gctgaactgc atcaccaccc ggtcgttgta gcagccgggc gtcgctgggg cgcggacggg
      121 cgcgccggcg gaggcggggg agtcgtaggt catgggagga aggcggaaaa ggtgcggcgg
      181 cattgttccg cgccggtctt caccggctct tgatctggat caaatgccgc ggcgcatggc
      241 cgcccgcatg cgaccgccgt cacgccgcgc ctgcgtcatc ccttcaggag aggggcgaaa
      301 ggcgtgcggc cgcgcgcccg gcccgccgcc ccctgcagct tgagccggat caatgcatcg
      361 cgctgccctg cgcggaacat gaaccaccgc cggcaagcgg ccggcgccta cggagaacgg
      421 ccatgcagga cctcctcgtc cgtgccacca gcctcggcga ctgggatgcc ggggtgcgtt
      481 gcgccgcccg gatcgccgcc agccagcgcg ccgcgctcac cgcgctctac gtggtcccgg
      541 gcggcctgcc cgcgatgccg gcctccgcct gggacggcgg cgagatggcc gccgcctacg
      601 cggtcgaact cgcgcgcgaa gtccgcgagg cggagcagcg cgcgcccgcg ttcgccgcct
      661 gggccagctc gatgggcgtg ccccatccca cctggctggc cagcgccggc gaggccgccg
      721 atgccttcgc ctacgtgggc aactggcacg acctgctggt gctgccgctc gacaacgacg
      781 gcgaggaccc gtggagcgcg gccggcggcg tcgcccgcat cgtcctgcgc gccgcgctgc
      841 cgtgcctggt gctgccgcgc ggggccgacg tacccgagcg ctgcgacgtg gccgcggtcg
      901 ccttcaacgg ctcggtcgaa tcgatccgcg cgctgcatgc ggcgctgccg ctgctgcgcg
      961 aggcgcgccg ggtggtgatg ctggccggcg atcgccagca accgcttgcg ccgttgccgg
     1021 atttcccgct cgaagcctgg tgcgagcgcc acctgccgca tgtcgaatac gcgccgctgg
     1081 atccgggtgc cgaaggcgcc gggatcctgc aggccgcgca ggccgccggc gcccagctgc
     1141 tggcgatggg cgcctatggc cgctcgcgct tctccgagtg ggtgctcggg ggcgttaccc
     1201 ggcacatgct gctcaacgcc ggcattccac tgctgatgcg gcactagctc gtcgcggcac
     1261 ccgcgtcgcc ccgaactgcc ggcccggcgg gcgctgccgg cggcggatgg acgtgcatcg
     1321 acgttcgcgt tccccgcagg cggcggcggg gcttgcgctt ttcgataatt ccagaataat
     1381 ggaattatga acaccgccca gaccctcgcc gcgctccggg cgctcgccca cgaaagccgc
     1441 ctggccgcgt tccgcgcact cgtggaggcc ggccacgagg ggctcgccgt cggcgcgctg
     1501 cgcgaaaggc tccagttgcc gcccgccacc ctgaccgcgc acctcaacgt gctgcgcgcc
     1561 gccggcctgg tggcggacgc ccgcgaaggc cgctcgatcc gcgtccgcgc cgattacgcg
     1621 cgcatggacg ccctgatcgg ctatct
//
LOCUS       DATIQC010000022         3303 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_672395, whole genome shotgun sequence.
ACCESSION   DATIQC010000022 DATIQC010000000
VERSION     DATIQC010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_672395"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1834)
                     /locus_tag="VLM17_00430"
     CDS             complement(<1..1834)
                     /locus_tag="VLM17_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HSR64061.1"
                     /translation="MSRFRRVLRWALFAVAGISLLGLIALGTLYYVVSSKLPDVDALR
                     HVEYQEPLYVYARDGKLMALFGETRRYPVDIAQVPQRQKQAFIAIEDNRFYQHHGVDY
                     KGVFRAVWLLATTHDKRVPGGSTITQQVARQFFLSSEYSYTRKLAEMLLAIKMERELG
                     KDEIFGLYLNKSFFGNRAYGIAAAAEFYYGKKLSDLSLDEMATLASIPKFPSSGNPIT
                     NPERAKLRRDYVLQRMRELGFIGRAEEAAAQAAPMHAAPHERPVEVYAPYVAEMVRQE
                     MVARYGGDVLTRGYHVTTTIDPVLQAAAQQALREGLESYDHRHGWRGAEQHFDLAADE
                     SAAQAGARVRTIAAQGGLLPAVVLRAEGDGVVVALGDGSMLTLDAGASRWTGKSPAAL
                     LKRGDQVRVRQPFAEDGAKGKPAPGWQLEQLPRAQSALVSLDADTGALRALIGGYSFA
                     ANKFNRATQARRQPGSSFKPFLYAAAFERGFNPASIVLDAPVVFKDRRGHLWRPQNDT
                     GDFAGPMRLREALVQSRNLVSVRLLDAIGVDYARRYISHFGIDEALLPPNLSMSLGTA
                     SLAPMMIARGYAVFANGGFRVTPYFIDEVRDRDGKLVFKEKPVVA"
     gene            2092..3150
                     /locus_tag="VLM17_00435"
     CDS             2092..3150
                     /locus_tag="VLM17_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilM"
                     /protein_id="HSR64062.1"
                     /translation="MGLITKSQSPLVGVDISSTAVKLLQLSRVGNRYRVEHYAVEPLP
                     PNAVVEKNIVEVEAVGDAIRRAMARSGSRAKYAAAAVAGSAVITKLIPMPGDLDEDDM
                     ESQIELEAVNYIPYPIEEVNLDFEVLGPMPGNPEMMQVLLAASRTENVGTRVSALELG
                     GLTAKVMDVEAFAIENAFALIADGLNAPRDGLMALVDVGATMTTLNILRNGRSIYSRE
                     QVFGGKQLTDEVMRRYGLSYEEAGLAKRQGGLPESYEIEVLEPFKEALVQQISRLLQF
                     FYAGSEFNRVDQIVLAGGCASIPGVADMVEEQLGVPTVVANPLAQMTLGPRVQAHALA
                     QDAPALMIACGLALRSFD"
     gene            3150..>3303
                     /locus_tag="VLM17_00440"
     CDS             3150..>3303
                     /locus_tag="VLM17_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005911890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HSR64063.1"
                     /translation="MARINLLPWRAERRKLRQKEFGTMLGLSAIGGVVLWFLVNSYYN
                     AQISGQN"
BASE COUNT          528 a         1088 c         1192 g          495 t
ORIGIN      
        1 aggcgaccac cggcttttcc ttgaagacca gcttgccgtc gcggtcgcgc acttcgtcga
       61 tgaagtacgg cgtcacccgg aagccgccgt tggcgaagac cgcgtagccg cgcgcgatca
      121 tcatcggcgc cagcgacgcg gtgcccagcg acatcgacag gttcggcggc agcagcgcct
      181 cgtcgatgcc gaagtggctg atgtagcggc gcgcgtagtc gacgccgatc gcgtcgagca
      241 ggcgcaccga gacgaggttg cgcgactgca ccagcgcctc gcgcaggcgc atcgggccgg
      301 cgaagtcgcc ggtgtcgttc tgcgggcgcc acaggtggcc gcggcggtcc ttgaacacca
      361 ccggcgcgtc gagcacgatc gacgcggggt tgaagccgcg ttcgaatgcc gccgcataca
      421 ggaaaggctt gaagctcgag cccggctgcc ggcgcgcctg ggtcgcgcgg ttgaacttgt
      481 tggcggcgaa gctgtagccg ccgatgagcg cgcgcagcgc gccggtgtcg gcgtccagcg
      541 aaaccagcgc cgactgcgcg cgcggcagct gctcgagctg ccaacccggc gcgggcttgc
      601 ccttggcgcc gtcttccgcg aacggctggc gcacgcgcac ctggtcgccg cgcttgagca
      661 gcgcggccgg actctttccg gtccagcggc tggcgcccgc gtccagcgtg agcatgctgc
      721 cgtcgccgag cgcgaccacg acgccatccc cctccgcgcg cagcaccacc gccggcagca
      781 acccgccctg cgcggcgatg gtgcgcacgc gcgcgccggc ctgggcggcg gattcgtcgg
      841 cggccaggtc gaagtgctgc tcggcgccgc gccagccgtg gcggtggtcg tagctctcca
      901 ggccctcgcg caacgcctgc tgcgccgccg cctgcaggac cggatcgatg gtggtggtga
      961 cgtggtagcc gcgggtgagc acgtcgccgc cgtagcgcgc caccatctcc tggcggacca
     1021 tctcggccac gtagggcgcg tagacctcga cggggcgctc atgcggcgcg gcgtgcatcg
     1081 gcgccgcctg cgcggcggcc tcctcggcgc ggccgatgaa gccgagctcg cgcatgcgct
     1141 gcagcacgta gtcgcggcgc agcttggcgc gctcggggtt ggtgatcggg ttgccgctgg
     1201 acgggaactt cgggatcgag gccagggtgg ccatctcgtc cagcgacaga tcggacagct
     1261 tcttgccgta gtagaactcg gcggccgcgg cgatgccgta ggcgcggttg ccgaagaagc
     1321 tcttgttgag gtacaggccg aagatctcgt ccttgcccag ctcgcgctcc atcttgatcg
     1381 cgagcagcat ctcggccagc ttgcgggtgt agctgtactc ggagctgagg aagaactggc
     1441 gcgccacctg ctgggtgatc gtcgagccgc ccggcacccg cttgtcgtgg gtggtcgcca
     1501 gcagccagac cgcgcggaac acgcccttat agtcgacgcc gtggtgctgg tagaagcggt
     1561 tgtcctcgat cgcgatgaag gcctgcttct ggcgctgcgg gacctgggcg atgtccaccg
     1621 ggtagcggcg ggtctcgccg aacagggcca tcagcttgcc gtcccgggca tagacgtaga
     1681 gcggttcctg gtattcgacg tggcgcaggg cgtccacgtc cggcagcttg gaggagacca
     1741 cgtagtacag cgtgccgagg gcgatcaggc cgagcaggga aatgccggcc acggcgaaaa
     1801 gcgcccagcg gagcacgcgg cggaaacggg acatcgggcg gaattcctcg cggtacgtgt
     1861 tgcagatgcg aaacagccgg gagtatagag gaggcgttcc ggccgaccgt gcggccggtc
     1921 tccctgcgga aagccgttga acggcggacg ggtgcagagg ggcaggcccg ccttgaaaag
     1981 gcgggcggac agggcatggc ggccgggggg attgccatgc cgtaaaaagt ccgttattta
     2041 atgctctggg gcacgtagtg cgcgtaagcg cccgtgaata ggggagaaaa cgtgggactg
     2101 atcacaaaga gccagtcgcc cctcgtgggc gtcgacatca gttcgaccgc ggtcaagctc
     2161 ctgcaattgt cgcgggttgg caatcgctat cgggtcgagc actacgcggt cgagcccctc
     2221 ccgcccaacg cggtggtgga gaagaacatc gtcgaggtcg aggccgtggg cgacgccatc
     2281 cggcgggcca tggcgcgttc gggcagccgc gccaagtacg cggccgccgc ggtggccggc
     2341 tcggcggtga tcaccaagct gatcccgatg cccggcgacc tcgacgagga cgacatggag
     2401 tcgcagatcg agctcgaggc ggtcaactac atcccgtacc cgatcgagga agtgaacctc
     2461 gatttcgagg tgctgggccc gatgccgggc aatcccgaaa tgatgcaggt gctgctcgcg
     2521 gcctcgcgga ccgagaacgt cggcacgcgg gtctcggcgc tggagctggg cggcctgacc
     2581 gcgaaggtca tggacgtcga ggccttcgcc atcgagaacg ccttcgccct gatcgccgac
     2641 ggcctcaacg cgccgcgcga cggcctgatg gcgctggtcg acgtgggcgc gaccatgacg
     2701 acgctcaaca tcctgcgcaa cggccgcagc atctacagcc gcgagcaggt gttcggcggc
     2761 aagcagctca ccgacgaggt catgcgccgc tacggcctca gctacgagga agcgggcctg
     2821 gccaagcgcc agggcgggct cccggagagc tacgagatcg aagtgctgga gccgttcaag
     2881 gaggcgctgg tccagcagat cagccgcctg ctccagttct tctacgccgg cagcgagttc
     2941 aaccgcgtcg accagatcgt gctggccggc ggctgcgcct cgatccccgg cgtggccgac
     3001 atggtcgagg agcagctggg cgtgccgacc gtggtcgcca atccgctggc gcagatgacc
     3061 ctcggcccgc gcgtgcaggc gcacgccctg gcccaggacg cccccgcgct gatgatcgcc
     3121 tgcggcctcg ccctgaggag cttcgactga tggcacggat caacctgctc ccatggcgcg
     3181 ccgagcggcg caagctgcgc cagaaggaat tcggcaccat gctcgggctg tcggccatcg
     3241 gcggcgtggt gttgtggttc ctggtcaaca gttactacaa cgcgcagatc agcggccaga
     3301 acg
//
LOCUS       DATIQC010000023         9527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_36474, whole genome shotgun sequence.
ACCESSION   DATIQC010000023 DATIQC010000000
VERSION     DATIQC010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9527
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36474"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1127)
                     /locus_tag="VLM17_00445"
     CDS             complement(<1..1127)
                     /locus_tag="VLM17_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008208733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR64064.1"
                     /translation="MHWIDGEARAAANGRWHAVFDPATGQPSDEVAAGDARDIASAVE
                     AAQRAFPAWSALPNSERARWLEALADALQSRLDAFADAESRDGGKPIRLAGEVEIPRA
                     VSNLRFFAHAATQFASESHHGQAGLNYTLRQPLGVVGTISPWNLPLYLFTWKIAPALA
                     AGNTVVAKPSEVTPATATMLGALAAEIGFPKGVLNIVHGLGPDVGEPLVTHPRVKAVS
                     FTGSTAVGRRIAGLAGPLLKKVSLELGGKNPTLVFADSDWRASLDTIVRSAFQNAGQI
                     CLCGSRILVERPIHDEFRAALLDRVQALRVGDSGDPGTEVGPLVSQAHFDKVVAALER
                     ARAEGGRVLCGGHALDRPGWYVAPTLIEGLGPDCASNREEI"
     gene            complement(1308..2093)
                     /locus_tag="VLM17_00450"
     CDS             complement(1308..2093)
                     /locus_tag="VLM17_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007081979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR64065.1"
                     /translation="MDLDLTGRHALVCGASEGIGRAAAHELALLGADVTVLARREDSL
                     RDVAAALPRKAAQVHGFIAADVADTGRLRAQAEALASGRPVHILVNNTGGPPPGPVHT
                     ADVTAFLDAFNKHLVANHTLAQALLPGMRAAQWGRIVNVISTSVREPIEGLGVSNTVR
                     GAVASWAKTLSREVAPFGITVNNVLPGFTETGRIAQLVRNRAQSSGKAEADVAAEMRA
                     IVPAGRFARPEELGGVIAFLCTPAADYINGVNLPVDGGRMHAM"
     gene            complement(2093..2728)
                     /locus_tag="VLM17_00455"
     CDS             complement(2093..2728)
                     /locus_tag="VLM17_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010379580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HSR64066.1"
                     /translation="MYLPRAFAGTDLADLDALLAAHPFITLVTLRDGLPVADHVPVLY
                     RRVGARVELRGHVARANPLARGPGGPALAIAHGPHAYVSPAWYPDKEAAARVPTWNYV
                     VAHLAGALSLFEEEAALAAVVDELSRVHEARLGSDWRYGHDREEHRRQLRGITGFRLV
                     AERVELKCKLSQNHPDANRASVAAALAAQDDAGARAVGALMAQSLQAKEHA"
     gene            complement(2728..3039)
                     /locus_tag="VLM17_00460"
     CDS             complement(2728..3039)
                     /locus_tag="VLM17_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64067.1"
                     /translation="MDDGRAHDEWWLATIGRTVVWARLRVLGAGTAEVFDSDGAILPF
                     DSEDSARGALLDAEFVAFDGLGEDDIEARGFAPGELAPPAAGSDEALRPRMVQQFPPL
                     R"
     gene            complement(3060..3368)
                     /locus_tag="VLM17_00465"
     CDS             complement(3060..3368)
                     /locus_tag="VLM17_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64068.1"
                     /translation="MILFLALCFVAMAIAGATAFVIFWPLALVHVRDRQPGIAAELGT
                     GAFLRPSALLWLLRGGYRSVRDPSLSGLATPARVSLIVILAGLALAGLLWLLSLVLPA
                     "
     gene            complement(3388..4788)
                     /gene="asnS"
                     /locus_tag="VLM17_00470"
     CDS             complement(3388..4788)
                     /gene="asnS"
                     /locus_tag="VLM17_00470"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HSR64069.1"
                     /translation="MTVVSVEHALAGKLPAGGEVTVRGWVRTRRDSKAGLSFVNVSDG
                     SCFAPIQVVAPATLSNYEDEVKRLTAGCSVIATGTLAPSQGQGQAFEIQATRVEVIGW
                     VDDPETYPIQPKAHSLEFLREVAHLRPRTNLFGSVTRIRDCLAKAVHRFFHEHGFYWI
                     NTPIVTTSDAEGAGQMFRVSTLDLANLPRGEGGSVDFSRDFFGRETFLTVSGQLNVEA
                     YCLALSKVYTFGPTFRAENSNTTRHLAEFWMIEPEIAFADLSEDARLAEDFLKYLFRA
                     VLAERADDMAFIAERVQPDAITRLEAFVNAPFERIDYTDAIALLQKSGQKFDFPVEWG
                     LDLQTEHERWLTEEHVGRPVVVMNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDARMAQFGLDPVHYQWYRDFRRYGTVPHAGFGLGFERLVVYVCGLSN
                     IRDAIPYPRAPGHAEF"
     gene            4898..5239
                     /locus_tag="VLM17_00475"
     CDS             4898..5239
                     /locus_tag="VLM17_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003473772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HSR64070.1"
                     /translation="MAVSLAPAALDRVRGYIAGSPGALGLRFGVRRTGCSGWGYAVDM
                     AREQGADDRVFEQDGVRIYVDADSLPLVDGTEIDFLKQGLNEQFVFRNPNVAGECGCG
                     ESFTTDAGKVA"
     gene            5329..7116
                     /locus_tag="VLM17_00480"
     CDS             5329..7116
                     /locus_tag="VLM17_00480"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HSR64071.1"
                     /translation="MLRMLALAALVATAFTAMPGRAQAQDPATALHALFDAEWERGMV
                     ESPENASINGDNRFNDRWSDNSLAAIAKRQAEDRAALDALHAIDRARLSPADQLNYDT
                     FEWLQQRAVERQKFKEYLQPVNHQGGVQTADGLAEYLPFATTKDYRDWLERMDAIPTV
                     VDQTIALMREGGKTGNTPPKVLMQRVPAQIAAQIVDDPSKSPFYRPFLKFRDSVPAAD
                     RPALQAEAQRIIREKIVPAYRTFAAFVDEDYLPKSRDSIAATALPDGKAYYDFLARYY
                     TTTDLTAEQIHAIGLKEVARLRAEMEQVKAATGFKGTLAEFFTYLRTDPRFFEKTPEG
                     LLERYRATAKRIDPELVKAFRTIPREPYGVRPIPDNVAPDTTTAYYQPGSNDGSRPGY
                     YYVNLYKPDVRPTWEMMPLTLHEAVPGHHFQFARGLELPDAPMFRRTAYFVGYSEGWG
                     LYAERLGYDMGLYDDPYDHFGQLTYEMWRAVRLVVDTGMHSMGWSRQQAIDYFKANCA
                     KTDQDIVNEVDRYLGTPGQALAYKIGQLKILELRERARQALGPDFDVRDYDDAVLETG
                     SVPLAALEKHIDAWIATRKAAAGQKAGTH"
     gene            7402..7818
                     /gene="rpsF"
                     /locus_tag="VLM17_00485"
     CDS             7402..7818
                     /gene="rpsF"
                     /locus_tag="VLM17_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HSR64072.1"
                     /translation="MRHYEIVFLVHPDQSEQVPAMIERYKGLIENGGGTIHRLEDWGR
                     RQLAYPIDNLVKAHYVLFNVEASQDVLNELAEGFRFNDAILRHLVIRRDEPVTEQSLI
                     MKNKDEKGDKPERGERRRRDDDNAPAADADNSAEAA"
     gene            7830..8060
                     /gene="rpsR"
                     /locus_tag="VLM17_00490"
     CDS             7830..8060
                     /gene="rpsR"
                     /locus_tag="VLM17_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006914321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HSR64073.1"
                     /translation="MSKFFRRRKFCKFTAEGVKEIDYKDLNTLRQNLTETGKIVPSRI
                     TGTKSRYQRQLATAVKRARFLALIPYTDNHNA"
     gene            8215..8667
                     /gene="rplI"
                     /locus_tag="VLM17_00495"
     CDS             8215..8667
                     /gene="rplI"
                     /locus_tag="VLM17_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006376492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HSR64074.1"
                     /translation="MELILLQKVTNLGNLGDKVNVKPGYGRNFLVPQGKAVPATAANL
                     AEFEAKRADYEAKAQALASEAESRRGKLEGASVTVYANASTEGKLYGSVGPRDIAEAL
                     TRLGMPVEKSEVVMGEGPLRHVGEYEVVVHLHADVETPVKVIVQPEAA"
     gene            complement(8734..8973)
                     /locus_tag="VLM17_00500"
     CDS             complement(8734..8973)
                     /locus_tag="VLM17_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64075.1"
                     /translation="MDLALYTSTAGRCVLVPDCFLPSAESERRYGPLRRCGSVHLPEP
                     VVDALWRRVLSDLDRRPFAVLRRNDARRLLDTVDG"
     gene            complement(9036..>9527)
                     /locus_tag="VLM17_00505"
     CDS             complement(9036..>9527)
                     /locus_tag="VLM17_00505"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSR64076.1"
                     /translation="GFYQPAVAPAPAAGEAYEPLPVPLPAEQASNASGMGREDTAAAN
                     APHPPVPARAPAPSRPVQPAPGTEVATAGASDPLPLVHPAPRYPADALRNQESGTVLL
                     NVQVGADGVPTLVEVVRSSRSRSLDRAASEAVRQWRFRPAQRNGQPVPGSVQVPVGFS
                     LSE"
BASE COUNT         1494 a         3365 c         3377 g         1291 t
ORIGIN      
        1 aagatttcct cgcggttgct cgcgcagtcg ggcccgaggc cttcgatcag ggtgggcgcc
       61 acgtaccagc cgggccggtc gagcgcgtgg cctccgcaca gcacgcggcc accctcggcg
      121 cgtgcgcgtt cgagtgcggc cacgaccttg tcgaagtgcg cctgcgacac cagggggccg
      181 acctcggtcc ccggatcgcc cgaatcgccg accctcaacg cctgcacgcg gtcgagcagc
      241 gcggcgcgga attcgtcgtg gatcgggcgc tcgaccagga tgcgcgagcc gcacaggcag
      301 atctggcccg cgttctggaa cgccgagcgc acgatggtgt cgagcgacgc gcgccagtcg
      361 ctgtcggcga acaccagcgt cgggttcttg ccgccgagct ccagcgacac cttcttcagc
      421 agcgggccgg cgaggccggc gatgcggcgg ccgaccgcgg tgctgccggt gaaggaaacc
      481 gccttgaccc gcggatgcgt caccagcggt tcgccgacgt cgggaccgag gccgtgcacg
      541 atgttgagca cgcccttcgg aaaaccgatt tccgcggcga gcgcgccgag catcgtcgcc
      601 gtcgccggcg tcacttccga cggcttggcg acgaccgtgt tgcccgccgc cagcgccggc
      661 gcgatcttcc aggtgaacag gtacagcggc aggttccacg gcgagatcgt gccgaccacg
      721 ccgagcggct ggcgcagggt gtagttcagg ccggcctggc cgtggtgcga ttcgctcgcg
      781 aactgcgtcg ccgcatgggc gaagaaacgc aggttggaga ccgcgcgcgg gatctcgact
      841 tcgcccgcca ggcggatggg cttgccgcca tcgcgcgatt cggcgtcggc gaaggcgtcc
      901 agccgcgact gcagcgcatc cgccagcgcc tccagccagc gggcccgctc gctgttgggc
      961 agcgccgacc aggcggggaa tgcgcgttgc gcggcttcga cggcgctcgc gatgtcgcgc
     1021 gcatcgccgg cggcgacttc gtcgctaggc tggccggtgg caggatcgaa gacggcatgc
     1081 cagcggccat tcgccgccgc acgggcttca ccgtcgatcc agtgcatcca tcgcatccgc
     1141 caagcttaac ccgacggcgt gcgcggccga agcgtcacgc gcagggcgcg gcgccgcggc
     1201 cgcggccgcg gtggaaatca gctgcgcggc gcagggcacg cggtcggcat cgcggcggca
     1261 caccctggcg ttcactgcca ttgcggctcc cgaccccggc caacgtgcta catcgcgtgc
     1321 atgcgtcccc cgtcaaccgg caggttgacg ccgttgatgt agtccgccgc gggggtgcag
     1381 aggaaggcga tcaccccgcc cagttcttcc ggcctcgcga agcggcccgc cggcacgatc
     1441 gcgcgcattt ccgccgcgac gtccgcctcc gccttgccgc tggactgggc gcggttgcgc
     1501 accagttgtg cgatccggcc ggtctcggtg aacccgggca gcacgttgtt gacggtgatg
     1561 ccgaagggcg ccacctcgcg cgaaagggtc ttcgcccagc tcgccaccgc gccacggacg
     1621 gtattggaga cgccgaggcc ttcgatcggc tcgcgcacgg aggtcgagat cacgttgacg
     1681 atgcgtcccc actgcgccgc gcgcatgccg ggcagcagcg cctgcgccag ggtgtggttg
     1741 gcgaccaggt gcttgttgaa ggcgtcgagg aaggccgtca cgtccgccgt gtgcaccggt
     1801 cccggcggcg gccccccggt gttgttgacg aggatgtgca cgggccggcc ggaggcgagc
     1861 gcctcggcct gcgcacgcag gcgcccggtg tcggcgacgt cggcggcgat gaagccgtgc
     1921 acctgcgccg ccttgcgcgg caaggcggcg gcgacatcgc gcaggctgtc ctcgcgccgc
     1981 gccagcacgg tcacgtcggc gccgagcagg gcgagttcgt gcgcggcggc gcgaccgatg
     2041 ccttcggagg cgccgcacac gagcgcgtgg cgaccggtca ggtccaggtc catcaggcgt
     2101 gctccttcgc ttgcagggac tgcgccatca acgcgccgac ggcgcgggcg ccggcgtcgt
     2161 cctgcgccgc cagcgcggcg gcgacgctgg cgcggttggc atcgggatga ttctggctga
     2221 gcttgcactt cagttcgacg cgctcggcga ccaggcggaa gccggtgatg ccgcgcagct
     2281 gcctgcggtg ctcctcgcgg tcgtgcccgt agcgccagtc gctgccgagg cgggcctcgt
     2341 gcacgcggct gagctcgtcg accacggctg ccagcgccgc ctcctcttcg aacagcgaga
     2401 gcgcgcccgc gaggtgggcg accacgtagt tccacgtggg cacgcgcgcg gccgcttcct
     2461 tgtccggata ccaggcgggc gaaacatagg catgcggccc gtgggcgatg gccagcgccg
     2521 gaccaccggg gccccgcgcc agcggattgg cgcgcgcgac gtggccgcgc agttccacgc
     2581 gcgcgccgac gcgccggtac agcaccggca cgtggtcggc gacgggcagg ccgtcgcgga
     2641 gcgtgaccag ggtgatgaag ggatgcgcgg cgagcagcgc gtcgaggtcc gcgaggtcgg
     2701 tgccggcgaa ggcgcggggc aggtacatca gcgcagcggc gggaactgct gcaccatgcg
     2761 cggccgcaac gcctcgtcgc tgccggccgc cggtggcgcg agttcgccgg gcgcgaagcc
     2821 gcgcgcctcg atgtcgtcct cgccgaggcc gtcgaaggcg acgaattccg catccagcag
     2881 ggcgccgcgt gcgctgtcct cgctgtcgaa cggcaggatg gcgccgtcgc tgtcgaacac
     2941 ctccgcggtg ccggcgccga gcacgcgcag gcgcgcccac accacggtgc ggccgatggt
     3001 ggcgagccac cattcgtcgt gcgcgcggcc gtcgtccatg ttgcggtcgg tcgcctcgct
     3061 catgccggga gcaccagcga cagcagccac agcagcccgg cgagcgcgag gccggcgagg
     3121 atcacgatca gggaaacgcg cgcgggcgtg gccagcccgc tcagcgacgg gtcgcgcacc
     3181 gagcggtagc cgccgcgcag cagccagagc agcgcggaag gcctgaggaa ggcgccggtg
     3241 ccgagttccg cggcgatgcc cggctggcgg tcgcgcacgt gcaccagcgc aagcggccag
     3301 aagatcacga acgcggtcgc gcccgcgatg gccatggcga cgaagcagag ggcgaggaac
     3361 aggatcacgc ggcgcgacct cgcggcatca gaattccgcg tgtccgggcg cgcgcggata
     3421 ggggatcgcg tcgcggatgt tcgacaggcc gcacacgtac acgaccagcc gctcgaagcc
     3481 gagcccgaag cccgcgtgcg gcacggtgcc gtagcggcgg aagtcgcggt accactggta
     3541 atggacgggg tcgaggccga actgcgccat gcgcgcgtcc agcacgtcga ggcgttcctc
     3601 gcgctgcgag ccgccgatga tctcgccgat gcctggcgcc agcacgtcca tcgcggcgac
     3661 ggttttcccg tcgtcgttca ggcgcatgta gaaggccttg atgtgttccg ggtagttcat
     3721 gaccacgacc gggcggccga cgtgttcctc ggtcagccag cgctcgtgct cggtctgcag
     3781 gtccaggccc cattcgaccg ggaagtcgaa cttctgcccc gacttctgca gcagcgcgat
     3841 cgcgtcggtg tagtcgatgc gctcgaacgg cgcgttgacg aaggcttcca gccgggtgat
     3901 ggcgtcgggc tgcacgcgct cggcgatgaa ggccatgtcg tccgcccgct cggccagcac
     3961 cgcgcggaac aggtacttga ggaagtcctc ggcgagcctc gcgtcctcgc tcaggtcggc
     4021 gaaggcgatc tccggctcga tcatccagaa ctcggcgagg tgccgggtcg tgttgctgtt
     4081 ctcggcgcgg aacgtcgggc cgaaggtgta gaccttgctc agcgcgaggc agtaggcctc
     4141 gacgttgagc tggccggaca cggtgaggaa ggtttccctg ccgaagaagt cgcgcgagaa
     4201 gtcgaccgag ccgccttcgc cgcgcggcag gttggcgagg tccagcgtcg acacgcggaa
     4261 catctgcccg gcgccctcgg cgtcggaggt ggtcacgatc ggcgtgttga tccagtagaa
     4321 gccgtgctcg tggaagaacc ggtgcacggc cttggccagg cagtcgcgga tgcgcgtgac
     4381 cgagccgaac aggttggtgc gcgggcgcag gtgggcgacc tcgcgcagga attcgagcga
     4441 atgcgccttg ggctggatcg ggtaggtctc gggatcgtcg acccagccga tcacctcgac
     4501 ccgggtcgcc tggatctcga acgcctggcc ctggccctgg gagggcgcga gcgtgccggt
     4561 ggcgatcacc gagcagccgg cggtgaggcg tttcacctcg tcctcgtagt tggacagggt
     4621 ggccggcgcg acgacctgga tcggcgcgaa gcaggaaccg tcgctcacgt tgacgaagga
     4681 caggcccgcc ttggaatcgc gccgggtgcg cacccagccg cggaccgtga cttcgccgcc
     4741 ggcgggcaac ttgcccgcga gcgcgtgttc gacgctcacc accgtcatgc cttgattcct
     4801 cgcctcgccg gaggcatctc ctgaacggcg cagtgtaccg tgcgtcccgg cgccggcgcg
     4861 cgccgctaga atgccgacac gctggaggag accccgcatg gccgtttcgc tcgcccccgc
     4921 cgccctcgac cgcgtgcgcg gctacatcgc cggcagcccc ggtgcgctcg gcctgcgctt
     4981 cggcgtgcgc cgcaccggct gctcgggctg gggctacgcg gtggacatgg cgcgcgagca
     5041 gggcgcggac gaccgcgtgt tcgagcagga cggcgtccgc atctacgtcg acgccgacag
     5101 cctgccgctg gtcgacggca ccgagatcga cttcctcaag caggggctca acgagcagtt
     5161 cgtgttccgc aacccgaacg tggccggcga gtgcggctgc ggcgagagct tcaccacgga
     5221 cgccggcaag gtcgcctgag cggccgcggt cgcgccggcc caaccttcgg caggtcgggc
     5281 agggccctcc gggcgctaga ctccggggac tcgtcccgga gcccgcccat gttgcgaatg
     5341 cttgccctgg ccgcgctcgt cgcgacggcc ttcaccgcca tgcccggtcg ggcgcaggcg
     5401 caggatccgg cgacggccct gcatgcgctg ttcgacgccg aatgggaacg cggcatggtc
     5461 gagtcgccgg agaacgccag catcaacggc gacaaccgct tcaacgaccg ctggagcgac
     5521 aacagcctgg ccgcgatcgc gaagcgccag gccgaggacc gcgccgcact ggacgcattg
     5581 cacgcgatcg accgtgcccg gctctcgccg gccgaccagc tcaactacga caccttcgag
     5641 tggctgcagc agcgcgccgt ggagcggcag aagttcaagg aatacctgca gccggtgaac
     5701 caccagggcg gcgtgcagac cgccgacggc ctcgccgaat acctgccgtt cgccacgacc
     5761 aaggactacc gcgactggct cgagcgcatg gacgccatcc cgacggtcgt cgaccagacc
     5821 atcgcgctga tgcgcgaggg cgggaagacc ggcaacacgc cgccgaaggt gctgatgcaa
     5881 cgcgtgccgg cacagatcgc cgcgcagatc gtggacgacc cgtcgaagag cccgttctac
     5941 cggccgttcc tgaagttccg cgacagcgtg cccgccgccg accggcccgc gctgcaggcc
     6001 gaggcgcagc ggatcatccg cgagaagatc gtgcccgcat accgcacctt cgcggccttc
     6061 gtcgacgagg actacctgcc gaagtcgcgc gactcgatcg ccgccaccgc gctgcccgac
     6121 ggcaaggcct actacgactt cctggcccgc tactacacga ccaccgacct caccgcggag
     6181 cagatccacg ccatcggcct gaaggaggtc gcgcgcctgc gcgcggagat ggagcaggtc
     6241 aaggccgcta ccggcttcaa gggcacgctc gccgagttct tcacctacct gcgcaccgat
     6301 ccgcgcttct tcgagaagac gccggaaggg ctgctggagc gctaccgcgc caccgccaag
     6361 cgcatcgacc cggaactggt gaaggccttc cgcaccatcc cgcgcgagcc ctacggcgtg
     6421 cggccgattc ccgacaacgt cgcgcccgac accaccaccg cgtactacca gccgggttcg
     6481 aacgacggca gccgcccggg ctactactac gtcaacctgt acaagcccga cgtgcggccg
     6541 acctgggaaa tgatgccgct gaccctgcac gaggcggtgc cgggccacca cttccagttc
     6601 gcgcgcgggc tggagctgcc ggacgcgccg atgttccgcc ggaccgcgta cttcgtcggc
     6661 tacagcgaag ggtggggcct gtatgcggag cgcctcggct acgacatggg cctgtacgac
     6721 gatccctacg accacttcgg ccagctgacc tacgagatgt ggcgcgcggt gcggctggtg
     6781 gtcgacaccg gcatgcattc gatgggctgg agccgccagc aggcgatcga ctacttcaag
     6841 gccaactgcg cgaagaccga ccaggacatc gtcaacgagg tcgaccgcta cctgggcacg
     6901 cccggacagg cgctggccta caagatcggc cagctcaaga tcctggagct gcgcgagcgg
     6961 gcccggcagg ccctggggcc ggatttcgac gtgcgcgatt acgacgacgc cgtgctggag
     7021 accgggtccg tgccgctggc ggcgctcgag aagcacatcg acgcctggat cgcgacccgc
     7081 aaggcggcgg ccgggcagaa ggcgggcacg cactaggtcc cttccggctg cagcccgggc
     7141 ggggccaagg ccgcacccgg gatgtgcccg gccccagccc cgggtgcgct gcgcccgcca
     7201 gggccacggg cgccgccccg gcgggccgtt cgcgttcgcc aagacttgcc gctaagccat
     7261 tgaacctgcc ataatttccg gctcccgagg cccgcctcgg gtcccttgct ccaccgcgca
     7321 cgcctccggg cgacgacggg gagctgtccg ggccgcatcg cgctgacgaa acgcgtcgac
     7381 ccacatccgc gaggaaccac catgcgtcat tacgaaatcg tgttcctggt ccatccggac
     7441 cagagcgagc aggtcccggc gatgatcgag cgctacaagg gcctgatcga gaacggcgga
     7501 ggcaccatcc accgcctcga ggactggggt cgccgccagc tggcgtaccc gatcgacaac
     7561 ctggtcaagg cccactacgt gctgttcaac gtcgaggcca gccaggacgt gctcaacgag
     7621 ctggccgaag gcttccgctt caacgacgcg atcctgcgcc acctggtcat ccgccgcgac
     7681 gagccggtga ccgagcagtc gctgatcatg aagaacaagg acgagaaggg cgacaagccc
     7741 gagcgcggcg agcgccgccg ccgtgacgac gacaacgccc cggccgccga cgccgacaac
     7801 tccgccgaag ccgcctgagg agccctgaca tgtccaagtt cttccgccgc cgcaagttct
     7861 gcaagttcac cgccgagggc gtcaaggaga tcgactacaa ggatctcaac accctgcgcc
     7921 agaacctgac cgagaccggc aagatcgtgc cgagccgcat caccggcacc aagtcgcgct
     7981 accagcgcca gctcgccacc gccgtcaagc gcgcgcgctt cctggcgctg atcccgtaca
     8041 ccgacaacca caacgcttga tgcgggtcct tccgcaagag cccgcacatc catgtgcgga
     8101 cttctcacgg aaagacatcg cttcgaccaa gtgaatcggc tcgtctaaac cgtccattcg
     8161 gacagcacac gttgcggcgt catcgaacgc cgctaacgaa tacggagcaa gaaaatggaa
     8221 ctgatccttc tgcagaaggt gaccaacctc ggcaacctcg gcgacaaggt caacgtgaag
     8281 ccgggctatg gccgcaactt cctcgtcccg cagggcaagg ccgtgccggc caccgccgcc
     8341 aacctggccg agttcgaggc caagcgtgcg gattacgaag ccaaggcgca ggccctggcc
     8401 agcgaggccg agtcgcgccg cggcaagctc gagggcgcca gcgtcaccgt gtatgcgaac
     8461 gcctccaccg aaggcaagct gtacggttcg gtcggcccgc gcgacatcgc cgaggcgctg
     8521 accaggctcg gcatgccggt cgagaagtcg gaagtggtga tgggcgaagg cccgctgcgc
     8581 cacgtcggcg agtacgaggt cgtggtgcac ctgcacgccg acgtcgagac gccggtcaag
     8641 gtgatcgtgc agccggaagc cgcgtaagcc ggccctccgc tgcgaagatg cgaacgggcg
     8701 ccgcgaggcg cccgtttcgt tttgcgcgtt ccctcagccg tcgacggtgt cgagcaggcg
     8761 ccgcgcgtcg ttccggcgca acacggcgaa cgggcgccgg tcgaggtcgg acagcacgcg
     8821 gcgccagagg gcgtcgacca cgggctccgg caggtgcacg ctgccgcagc gccgcagcgg
     8881 tccgtaccgc cgctcggact cggccgaggg caggaagcag tcgggaacca gcacgcagcg
     8941 cccggcggtc gaggtgtaaa gcgcgagatc catggcctat tccccatccc ctgtgtgcgc
     9001 tggaacgccg ggcggggcgg ggaccggccg cgccttcact cgctgaggct gaagcccacc
     9061 ggcacctgca cgctgccggg caccggctgg ccgttgcgct gggcggggcg gaaccgccat
     9121 tggcgcacgg cctcgctggc ggcgcggtcc aggctgcggg accggctgct gcgcaccacc
     9181 tcgaccagcg tgggcacgcc gtcggcgccg acctgcacgt tcagcagcac cgtaccggat
     9241 tcctggttgc gcagcgcgtc cgccggatag cgcggcgccg gatggaccag cggcagcgga
     9301 tcgctggccc cggccgtcgc cacctcggtg ccaggggcgg gctggacggg gcgcgatggc
     9361 gccggcgcgc gggcgggcac gggcggatgc ggcgcgttcg cggccgcggt gtcctcgcgg
     9421 cccatgccgc tggcgttgct ggcctgctct gcgggcaggg gcacgggcaa cggctcgtag
     9481 gcctcgccgg cagccggggc gggtgcgacg gcgggctggt agaagcc
//
LOCUS       DATIQC010000024        10931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_354431, whole genome shotgun sequence.
ACCESSION   DATIQC010000024 DATIQC010000000
VERSION     DATIQC010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 10931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10931
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354431"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1066)
                     /gene="hisD"
                     /locus_tag="VLM17_00510"
     CDS             complement(<1..1066)
                     /gene="hisD"
                     /locus_tag="VLM17_00510"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HSR64077.1"
                     /translation="MRRVRWAGLDAGARAALLQRPAQAVAGDVQATVAAVVEGVRARG
                     DAALREYAARFDRVALDDFQVTAREWQAADRIAPALQAAIADAAARIGAYHARGMAQG
                     YAVETAPGVRCERVLRPIRRVGLYVPAGTAPLPSTVLMLGVPARLAGCREVLLCTPPR
                     ADGSADPVVLHAARACGLTRILKLGGAQAIAAMAFGTASIPRCDKLFGPGNAFVTEAK
                     RQVSMRADGAAIDMPAGPSEVLVIADAGANPAFVAADLLSQAEHGPDSQVLLLSDDDV
                     LLEAVERELARQLAMLPRADIARRALGASSAIRVGSLDEAFDISNAYAPEHLILALRA
                     PRAWLDRVEAAGSVFLGDLAP"
     gene            complement(1078..1980)
                     /gene="hisG"
                     /locus_tag="VLM17_00515"
     CDS             complement(1078..1980)
                     /gene="hisG"
                     /locus_tag="VLM17_00515"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HSR64078.1"
                     /translation="MSPAAPAAVRDRLRIAIQKNGRLSEPARALLASCGLAWRESRDR
                     LFCYGESLPIDLLLVRDDDIPALIADGICDLGIVGRNVLREQSLAGGGAAAPGEWRAL
                     GFGGCRLALAIPQEESWRDPMQLAGCRIATSYPATLAAWLRDQAIEAEVVTLSGSVEI
                     APRLGKADAVCDLVSSGATLAANQLRPVATLLESEAVLAGPAAPFGDARTELSTLLLR
                     RLDGVLRVKDSKLLLCQAARGALEDVLQLLPDADAPTVTAIGGDRLALQALCRGALTW
                     QRLEDLKRAGAQALMVLPIERMLA"
     gene            complement(1989..2312)
                     /locus_tag="VLM17_00520"
     CDS             complement(1989..2312)
                     /locus_tag="VLM17_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005416326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YerC/YecD family TrpR-related protein"
                     /protein_id="HSR64079.1"
                     /translation="MKQRPQPLPERDAESDLDRLATAFAALAKVEDVRAFLEDLCTPA
                     ELEAMSDRWKVVPLLLENRPYREIHERTLVSVTTIGRVARTIERGAGGYDAAVRRLRR
                     TASHH"
     gene            complement(2554..4452)
                     /locus_tag="VLM17_00525"
     CDS             complement(2554..4452)
                     /locus_tag="VLM17_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HSR64080.1"
                     /translation="MDDAVKLDGRSLTRAQLVAVARGAQVELDADALQAVDRAAGFLA
                     EQIRREEPIYGVSTGFGSNADKLLGGHPMRDAGLEARSPRRNLHVELQNNLIVTHAVC
                     VGEPFAADVVRAMLCIRINTLLKGHSGIRVQTLQALAALLNAGVVPVVPQLGSVGTSG
                     DLAPLSHLAIVLLGGGEAFLGGERLPGAEALRRAGLAPVALSYKEGLALNNGTAQMLA
                     CGVLALQRLEDLVDTADLAAAMTIDAFAGRLGAFAEEVHALRPHPGQVEAAAHLRRLL
                     EGSTLADIAYHLVPRFRQWQPTSWDTPGSRALTFDIGWDWVPLSQRHGREKFYTRFRP
                     FRGGKKHQPQDSYSLRCVPQVHGAVRDALAQAARVLDVELNSVTDNPLVFPDARADHV
                     EQQVVSAGHFHGMPLALAMSYVKAAVPVLASISERRLNKLVDPATNDGLPPFLIGNED
                     GTESGYMIVQYTAAAIVNDLASRAMPASVYSIPTSANAEDHVSMGANEARHVLAMADD
                     LGKVLALELYTAAQALDLRRGMIDAARELASRTDAAGFATRIQGGLQPGDADRQAFLA
                     DVEGLRSELATAPAFRPGRVVVAAHAAIRAEIPFLGHDRALDGEVATAVRLVHEGHVL
                     RAAREALR"
     gene            complement(4452..5846)
                     /gene="hisS"
                     /locus_tag="VLM17_00530"
     CDS             complement(4452..5846)
                     /gene="hisS"
                     /locus_tag="VLM17_00530"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HSR64081.1"
                     /translation="MAAQPIKPRTPPGVMELLPREQIAFQRMLDAIRATFERFGFLPV
                     ETPVMELSEVLLTKSGGETERQVYFVQSTGALEKADGGLPELALRFDLTVPLARYVAE
                     HEHELAFPFRRYQMQRVYRGERAQRGRFREFYQCDIDVVGKDSLSPRYDAEIPAVIAA
                     VFEQLAIGDFTIQLNHRKLLRGWFEGLGIAEGERQVAVLRELDKLDKRGEDAVRATLA
                     GEGFALAAEVAEKLLAFSRIRARGHDAALAALDALGAGTPLFEEGRAELRQVFAQLRA
                     LGVPDARYALNLSIARGLDYYTGIVYETTLDAHPQIGSICSGGRYDNLASHYTKSKLP
                     GVGISIGLTRLFFQLREAGIVGATESSVDVLVALLDDAGLAPALALSQRLRAAGLNVE
                     TQLEPRKLAKQLQYADRAGIRFVAMRGEDEAARGMVAVKDLRRGEQFEVAEDELAAAL
                     QVEREQLRAQPGMA"
     gene            6005..6081
                     /locus_tag="VLM17_00535"
     tRNA            6005..6081
                     /locus_tag="VLM17_00535"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6039..6041,aa:Pro,seq:cgg)
     gene            6186..7067
                     /locus_tag="VLM17_00540"
     CDS             6186..7067
                     /locus_tag="VLM17_00540"
                     /inference="COORDINATES: protein motif:HMM:TIGR04390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiO family outer membrane beta-barrel protein"
                     /protein_id="HSR64082.1"
                     /translation="MPRSAPARPRPAFRLPSASFAAACHPFAGLLSAGLLAFAMGPAR
                     AATDVAGQLMPPAGQTGFVEVGGEHQLLDHGYGDWSGAYLRGVWTAPSKDVVTFELVD
                     SRRFGEHGAYAALGATHDFDDRWYGSATLGGGDGAFYWPDWRIDVALSRKWGASRSVV
                     TTLGYTQYNAPDGHVDRTGLLGFAWYAPHHLVLEGGWRPNRSSPGGVRSDAGFAALTW
                     GEDGRQYLSLRHDRGREAYQTIGEDVLLVDFPSHVTALTWRRWVTARCGFNLRYEAYA
                     SSNYDRHGGEAGVFCGY"
     gene            7057..7881
                     /locus_tag="VLM17_00545"
     CDS             7057..7881
                     /locus_tag="VLM17_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64083.1"
                     /translation="MATEAASVANTAATPAIDDPLFDTLRRRGYRGTAIPAHRALASE
                     QVRRRTVVGALLLALLFDAALLALAVPLAEFWRRLIDGWLSAIGGPVASTLLWRPLLG
                     GWSAPFPDIALGAGAPTGLQWLDALLVGVMLLLASLLLPHRARPLAYLLRLVALVQFS
                     ANVYFYVTPSQFPYSLRGHVTTLCAGAYVLMLLTPWVHALTYYPFDHRWSRKLFLTLA
                     TLAFFAVYTPVSLALHAWILHEASLVAMPVLYLVFGYPVDIFLLVGLYGWGMSWKH"
     gene            7884..9131
                     /locus_tag="VLM17_00550"
     CDS             7884..9131
                     /locus_tag="VLM17_00550"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR64084.1"
                     /translation="MPAFLDSLLAAAIAAVLVYTGRHYLFTLKRLFSPVNDLYCDIED
                     AQWPTVTVQVAAHNEEAVIAHCLEALLASSYPADKLVLMPVNDRSGDRTREIIDAFVA
                     RHPGRIVPFHRASGKPGKAAALKDALALVQSDVLVVFDADYVPSRGLVKRLVAPFFDP
                     EIGAVMGRVVPLNAGTNLLTRLLEMERSGGYQVDQQARMQLGLVPLYGGTTGGVRVAA
                     LHAIGGWHDDTLAEDTDLTYRLLLAGWKTAYQNRAECYEEVPETWRMRIRQIRRWAKG
                     HNQALRRHLLGLLRSPRVSLREKLDGALLLGVYVMAPVLAIAWLLVLALFYTGHLLFA
                     GASLLMLCFFLYGSLGNFAAFFELAAGSHLDRRRDNARLLPLVLLSFTVSLVAVTRAM
                     CSAALDAVARRELVWHKTGRFRK"
     gene            9128..10228
                     /locus_tag="VLM17_00555"
     CDS             9128..10228
                     /locus_tag="VLM17_00555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64085.1"
                     /translation="MTPALWLLLLFAANVALFCLPLLPAFAEMRKRGNAPLFIPADDE
                     AGIGYFAERFRQRLAADWNSATLFEPGGPGDAGYVATLGAAHAALPASIAIQYRMAEG
                     ELRGAARLDAAEQPTVVGGTLRLARGTHLLGEAYAHARLDAPGGSVLRAVLCDGELVL
                     GPGSGILRWAHARRIATGDGSRAMGRLSATESLSLGRGCQFERLSAPELRFGGGAAAQ
                     DPTPASTRGWVADRRARVVRESLDRLLCNGDVSIPPGSLVDGQLIVRGRLTLGAGCHV
                     RGGIKVHGPVALGDDVVVSGAVFASGDATFGMRCSVDGPVSSAGVVRLGAGCRIGRME
                     HPTSLVAPVVSVAPGCTCHGSIWARTNGRVDA"
     gene            10228..>10931
                     /locus_tag="VLM17_00560"
     CDS             10228..>10931
                     /locus_tag="VLM17_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64086.1"
                     /translation="MRRLRLLLRPRALLPLLAGIAVLFALGRIAYQVVGEPPPEQALF
                     LLVDDHSTLDAPQVGLWRDAADEVGIPLRVLRASEFLRPQPWPATPVGIVLPDGLLRR
                     ASRSLTERLADYARGGGRLMVVYDAATQTPGGGDAADHRALLADAVGIDYALYRALGQ
                     GQTVHEAVQGDPALLRALHVPPGKYMPVAAPGPATITSYRYGAIAYPAFATRGRYAGR
                     VLLQGRSGNLVAGLRD"
BASE COUNT         1415 a         3983 c         3948 g         1585 t
ORIGIN      
        1 ccggggcgag gtcgccgagg aagacggaac cggcggcctc gacccggtcc agccaggcgc
       61 gcggcgcgcg cagcgcgagg atcaggtgct cgggtgcgta ggcattgctg atgtcgaacg
      121 cctcgtccag cgacccgacc cggatcgcgc tcgacgcccc cagcgcgcgt cgcgcaatgt
      181 cggcccgcgg cagcatcgcc agctgccgcg cgagttcgcg ctcgaccgcc tccagcagga
      241 catcgtcgtc ggacagcagc agcacctgcg aatccgggcc gtgttcggcc tgcgacagca
      301 ggtcggcggc gacgaaggcg ggattcgcgc cggcatcggc gatgaccagc acttccgacg
      361 ggccggccgg catgtcgatc gccgcgccgt cggcgcgcat cgacacctgg cgcttggctt
      421 cggtgacgaa ggcattgccc ggcccgaaca gcttgtcgca gcgcggaatg ctggcggtgc
      481 cgaaggccat cgccgcgatc gcctgcgcgc cgccgagctt gaggatgcgg gtgaggccgc
      541 aggcgcgtgc ggcgtggagg accaccggat cggcggaacc gtccgcgcgt ggcggcgtgc
      601 acagcagcac ctcgcggcag ccggccagcc gtgcgggaac gccgagcatc agcaccgtgg
      661 agggcagcgg cgcggtcccc gcgggcacgt acaggccgac gcggcggatc ggccgcagca
      721 cgcgctcgca gcgcacgccg ggggccgttt cgacggcgta gccttgcgcc atgccgcgcg
      781 cgtggtaggc gccgatacgc gcggcggcat cggcgatggc ggcctgcagc gcgggcgcga
      841 tccggtccgc cgcctgccat tcgcgcgcgg tcacctggaa atcgtcgagg gcgacgcggt
      901 cgaagcgtgc ggcatattcg cgcagcgcgg catccccgcg cgcacgcacg ccttcgacga
      961 cggccgcgac cgtcgcctgc acgtccccgg cgaccgcctg cgccggccgc tgcagcagtg
     1021 ctgcgcgcgc gccggcatcc aggcccgccc atcggacacg acgcagcagc ggcgggctca
     1081 tgccagcatc ctttcgatcg gcaacaccat cagggcctgc gcgcccgcgc gcttgaggtc
     1141 ctccagccgc tgccaggtga gcgcgccgcg gcacagcgcc tgcagcgcca gccggtcgcc
     1201 gccgatggcg gtgaccgtcg gcgcgtccgc gtcgggcagg agttgcagca cgtcttccag
     1261 cgcaccacgc gcggcctggc acagcaggag cttgctgtcc ttcacccgca gcacgccatc
     1321 gaggcggcgc agcagcagcg tggacagctc cgtacgcgcg tcgccgaagg gcgcggccgg
     1381 cccggccagc accgcctcgc tttccagcag cgtcgcaacc ggcctgagct ggtttgccgc
     1441 gagggtggcg ccgctcgaga ccaggtcgca gacggcatcg gccttgccga gccgcggggc
     1501 gatctcgacc gagcccgaaa gcgtcaccac ctccgcctcg atcgcctggt cgcgcagcca
     1561 cgcggcaagc gtcgccggat agctggtggc gatgcggcag ccggcgagct gcatggggtc
     1621 gcgccagctt tcctcctgcg ggatggcgag tgcgaggcgg caaccgccga agccgagcgc
     1681 gcgccattcg cccggggcgg ccgcaccccc gcctgccagc gactgctcgc gcagcacgtt
     1741 gcgcccgacg atgccgaggt cgcagatgcc gtcggcgatc agcgcgggga tgtcgtcgtc
     1801 gcgcaccagc agcaggtcga tcggcagcga ttcgccgtag cagaacaggc ggtcgcggct
     1861 ctcgcgccag gcgaggccgc aggacgcgag cagcgcgcgc gcgggttcgc tcaggcgtcc
     1921 gttcttctgg atggcgatgc gcagacggtc gcgcaccgcc gcgggggcgg cgggactcat
     1981 gcggtgcctc aatggtggga agcggtgcgg cgcaggcggc gaacggcggc gtcgtagcca
     2041 ccggcgccgc gctcgatggt gcgcgcgacg cggccgatcg tcgtgacgct gaccagcgtg
     2101 cgctcgtgga tctcgcggta gggccggttt tccagcagca gcggcacgac cttccagcga
     2161 tcgctcatcg cctccagctc ggccggcgtg cacaggtcct cgaggaaggc gcggacgtct
     2221 tccaccttgg cgagcgcggc gaaggccgtg gccaaccggt cgaggtcgga ttcggcgtcg
     2281 cgttccggca ggggctgggg gcgttgcttc atgtgagaat gtattagcgt gttaatacat
     2341 tgccgaacgc gggcggcgct gtcaagccgc ctgcgtcgat ccgcagcggg aattcatgtt
     2401 cggaaggcgg atcccgtgat gccggacgag gaagcgcgct ccgatcggcg acgactcgca
     2461 acgcttccgt ccggcatgcc gccggctctc gcaatcgcgc ccctccgggc ttcggggggc
     2521 cggcgggcaa tcgcgcccgc cgccatcgat gcgtcagcgc aaggcttcgc gcgccgcgcg
     2581 cagcacgtgg ccctcgtgca ccagtcgcac cgccgtggcg acttcgccgt cgagggcgcg
     2641 gtcatggccc aggaacggga tctcggcgcg gatggccgca tgcgccgcca ccaccaccct
     2701 gcccggccgg aacgccggag cggtcgccag ttccgaccgc aggccttcga cgtcggcgag
     2761 gaaggcctgg cgatcagcgt ccccaggctg caagccgccc tggatcctgg tcgcgaagcc
     2821 ggcggcgtcg gtacgcgacg cgagttcgcg ggcggcgtcg atcatgcccc ggcgcaggtc
     2881 gagcgcctgc gcggcggtgt agagctcgag ggcgaggacc ttgccgaggt cgtccgccat
     2941 cgccagcacg tggcgcgcct cgttggcgcc catcgacacg tggtcctcgg cattcgccga
     3001 agtggggatc gaatagaccg acgccggcat cgcgcggctc gcgaggtcgt tgacgatcgc
     3061 cgccgcggtg tactgcacga tcatgtagcc ggactcggtg ccgtcctcgt tgccgatcag
     3121 gaacggcggc aggccgtcgt tggtggccgg atcgaccagc ttgttgaggc ggcgttcgct
     3181 gatcgacgcg agcaccggga cggcggcctt gacgtagctc atcgccagcg ccagcggcat
     3241 gccgtggaag tggccggccg acaccacctg ctgctcgacg tggtcggccc gcgcgtcggg
     3301 gaacaccagc gggttgtcgg tgacggagtt gagttcgacg tcgagcacgc gcgcggcctg
     3361 cgccagcgcg tcgcgcaccg cgccatgcac ctgcggcacg cagcgcagcg agtagctgtc
     3421 ctgcggctgg tgcttcttgc cgccgcggaa cggcctgaag cgggtgtaga acttctcgcg
     3481 cccgtggcgc tgcgacaacg gcacccagtc ccagccgatg tcgaaggtga gcgcgcgcga
     3541 accgggggtg tcccagctcg tcggctgcca ttggcggaag cgcggcacga ggtggtaggc
     3601 gatgtcggcg agcgtcgatc cctccaggag gcggcgcagg tgcgcggcgg cctcgacctg
     3661 gccgggatgc gggcgcaggg cgtgcacctc ctccgcgaag gcgcccaggc ggccggcgaa
     3721 ggcatcgatg gtcatcgccg cggcgaggtc ggcggtgtcg accaggtcct ccagccgctg
     3781 cagcgcgagc acgccgcagg ccagcatctg cgcggtgccg ttgttgagcg cgagaccctc
     3841 cttgtaggac agcgccaccg gcgcgaggcc ggcgcggcgc aacgcttcgg cgccgggaag
     3901 gcgctcgccg cccaggaatg cctcgccgcc gccgagcagg acgatggcca ggtgcgacag
     3961 cggcgccagg tcgcccgagg tgccgaccga accgagctgc ggcaccaccg gcaccacgcc
     4021 ggcgttgagc agcgcggcca gcgcctgcag cgtctgcacg cggatgccgg agtggccctt
     4081 gagcaacgtg ttgatgcgga tgcacagcat cgcccgcacc acgtccgccg cgaacggttc
     4141 gccgacgcag acggcgtggg tgacgatcag gttgttctgc agctccacgt gcaggttgcg
     4201 cctcggcgaa cgcgcctcga ggccggcatc gcgcatcgga tggccgccga gcagcttgtc
     4261 ggcgttgctg ccgaagccgg tcgacacgcc gtagatgggt tcctcccggc ggatctgctc
     4321 ggcgaggaag ccggcggcgc ggtcgaccgc ctgcagcgcg tccgcgtcga gttcgacctg
     4381 cgcgccgcgc gccaccgcca ccagctgcgc gcgggtcagc gagcgcccgt ccagcttcac
     4441 cgcgtcgtcc atcacgccat ccccggctgc gcgcgcagct gttcgcgttc gacctgcagg
     4501 gcagccgcca gctcgtcctc ggcgacctcg aactgctcgc cgcgccgcag gtccttcacc
     4561 gccaccatgc cgcgcgcggc ctcgtcctcg ccgcgcatcg cgacgaagcg gatgcccgcg
     4621 cggtcggcgt actgcagctg cttcgccagc ttgcgcggct ccagctgggt ctcgacgttg
     4681 agcccggccg cgcgcaggcg ctgcgacagt gcaagcgccg gtgcgagccc cgcgtcgtcc
     4741 agcagcgcga cgagcacgtc gaccgagctc tccgtggcgc cgacgatgcc cgcctcgcgc
     4801 agctggaaga acaggcgggt cagcccgatc gagatgccga cgcccggcag cttcgacttc
     4861 gtgtagtggc tggcgaggtt gtcgtagcgg ccacccgagc agatcgagcc gatctgcggg
     4921 tgcgcatcca gcgtggtctc gtagacgatg cccgtgtagt agtccaggcc gcgcgcgatc
     4981 gacaggttga gcgcgtagcg cgcgtccggg acgccgagcg cgcgcagctg ggcgaacacc
     5041 tggcgcagct cggcgcggcc ttcctcgaac agcggcgtgc cggccccgag cgcgtccagc
     5101 gccgccagcg cggcgtcgtg gccacgcgcg cggatgcgcg agaacgccag cagcttctcc
     5161 gccacctcgg cggccagcgc gaagccctcg cccgccagcg tcgcgcgcac agcgtcctcg
     5221 ccgcgcttgt cgagcttgtc gagctcgcgc agcaccgcga cctgtcgctc gccttcggcg
     5281 atgccgaggc cctcgaacca gccgcgcagc aacttgcggt ggttgagctg gatggtgaag
     5341 tcgccgatcg ccagctgctc gaacaccgcc gcgatcaccg ccgggatctc ggcgtcgtag
     5401 cgcggcgaca ggctgtcctt gccgacgacg tcgatgtcgc actggtagaa ctcgcggaag
     5461 cggccgcgct gggcgcgctc gccgcggtac acgcgctgca tctggtagcg gcggaacgga
     5521 aatgccagtt cgtgttcgtg ctcggcgacg tagcgcgcca gcggcacggt caggtcgaag
     5581 cgcagcgcca gctccggcaa ccccccgtcg gccttctcca gggccccggt ggactgcacg
     5641 aagtagacct gccgctcggt ctcgccgccg gacttggtca gcagcacctc cgacagctcc
     5701 atcaccgggg tttccaccgg caggaagccg aagcgctcga aggtggcgcg gatcgcgtcg
     5761 agcatgcgct ggaaggcgat ctgctcgcgc ggcagcagtt ccatcacgcc ggggggcgtg
     5821 cggggcttga tcggctgggc ggccaaggcg ggactccgtc ggagggcgtg cgcgccgaca
     5881 tcgacgcgcg cgcgaggccg catagtctaa ggcagcgccc cggccaccct gccggaaccc
     5941 gaaccgcgcc gccccggatg cttgcctgcg cgcatggccg ctcgctagaa tgcgcggctc
     6001 ccgtcggggt gtagctcagc ctggtagagc gctacgttcg ggacgtagaa gtcgcaggtt
     6061 caaatcctgt ctccccgacc attcgcgaaa gccgcccccg ggcggctttc tgcgtttccg
     6121 gtcgccgccc cgcgggagtg gcacgcctgt tgcatactcc ggcggacatc catcacatcc
     6181 tcgccatgcc ccgttccgcc ccggcgcgcc cgcgccccgc gttccgcctg ccctccgcct
     6241 cgtttgccgc cgcctgccac ccgttcgccg gcctgctgtc cgccggcctg ctggcgttcg
     6301 ccatgggccc ggcgcgggcc gccaccgacg tcgcggggca actcatgccg ccggcgggcc
     6361 agaccggctt cgtcgaggtc ggcggcgaac accagctgct cgaccacggc tacggcgact
     6421 ggagcggcgc ctacctgcgc ggcgtgtgga cggcgccgtc gaaggacgtg gtcaccttcg
     6481 aactggtcga cagccgccgc ttcggcgagc acggtgcgta tgccgcgctc ggcgccaccc
     6541 acgacttcga cgaccgctgg tacggctcgg ccacgctcgg cggcggcgac ggcgccttct
     6601 actggccgga ctggcgcatc gacgtcgcgc tgagccgcaa gtggggcgcc agccgcagcg
     6661 tcgtcaccac gctcggctac acccagtaca acgcccccga cggccacgtc gaccgcaccg
     6721 ggctgctcgg cttcgcctgg tacgcgccgc accacctcgt gctggaaggc ggctggcggc
     6781 cgaaccgcag ttcgccgggc ggggtgcgct cggatgccgg cttcgccgcg ctgacctggg
     6841 gcgaggacgg caggcagtac ctgtcgctgc gccacgaccg cgggcgcgag gcctaccaga
     6901 ccatcggcga ggacgtgctg ctggtggact tcccgagcca cgtgacggcg ctgacctggc
     6961 ggcgctgggt gaccgcgcgc tgcggcttca acctgcgcta cgaggcctac gcgagcagca
     7021 actacgaccg ccatggcggc gaggccggcg tgttctgtgg ctactgaggc cgcgtccgtc
     7081 gcgaacacgg cggcgacgcc ggcgatcgac gacccgctgt tcgacaccct gcgccggcgc
     7141 ggctaccgcg gcacggcgat cccggcgcat cgcgcgctcg cgtcggagca ggtgcgccgg
     7201 cggacggtgg tcggggcgct gctgctcgcg ctgctgttcg acgcggcgct gctggccctg
     7261 gcggtgccgc tggcggagtt ctggcggcgg ctgatcgacg gctggctgtc ggcgatcggc
     7321 gggccggtcg cctcgaccct gctgtggcgg ccgctgctgg gcggctggtc ggcgcccttc
     7381 cccgacatcg cgctcggcgc cggtgcgccg accggcctgc aatggctcga tgcactgctg
     7441 gtcggcgtga tgctgctgct ggccagcctg ctgttgccgc accgtgcgcg cccgctcgcc
     7501 tacctgctgc ggctggtcgc gctggtgcag ttcagcgcca atgtctactt ctacgtaacg
     7561 cccagccagt tcccctattc cctgcgcggg cacgtcacca ccctgtgcgc cggcgcgtac
     7621 gtgctgatgc tgctcacgcc gtgggtgcat gcgctgacct actacccgtt cgaccaccgc
     7681 tggtcgcgca aactcttcct gaccctggcg acgctcgcgt tcttcgccgt ctacacgccg
     7741 gtctcgctgg cgctgcacgc gtggatcctg cacgaggcct cgctggtggc gatgccggtg
     7801 ctgtacctcg tattcggcta tccggtcgac atcttcctgc tggtcggcct gtacggctgg
     7861 ggcatgagct ggaagcactg accgtgcccg ccttcctcga cagcctgctc gccgccgcga
     7921 tcgccgcggt gctggtgtac accggccggc actacctgtt caccctcaag cgcctgttct
     7981 cgccggtcaa cgacctgtac tgcgacatcg aggacgcgca gtggcccacg gtgacggtgc
     8041 aggtcgccgc gcacaacgag gaggcggtga tcgcccactg cctcgaggcg ctgctggctt
     8101 ccagctatcc ggcggacaag ctggtgctga tgccggtcaa cgaccgttcc ggcgatcgca
     8161 cgcgcgagat catcgatgcc ttcgtcgccc gccatccggg ccgcatcgtt cccttccatc
     8221 gcgcctccgg caagccgggc aaggcggcgg cgctgaagga tgcgctggcc ctcgtgcaga
     8281 gcgatgtgct ggtggtgttc gacgccgact acgtgccctc gcgcggcctg gtcaagcgtc
     8341 tcgtcgcgcc gttcttcgat ccggaaatcg gcgcggtgat gggccgggtg gtaccgctca
     8401 atgcgggcac caacctgctc acccgcctgc tggagatgga gcgctccggc ggctaccagg
     8461 tcgaccagca ggcgcgcatg cagctcggcc tcgtgccgct gtacggcggc accaccggcg
     8521 gcgtgcgggt ggcggcgctg catgcgatcg gcggctggca cgacgacacc ctcgccgagg
     8581 acaccgacct cacctaccgc ctgctgctcg ccggctggaa gaccgcgtac cagaaccgcg
     8641 ccgagtgcta cgaggaagta ccggaaacct ggcgcatgcg catccgccag atccggcgct
     8701 gggccaaggg ccacaaccag gcgttgcgcc ggcacctgct cggcctgttg cgcagcccgc
     8761 gcgtgagcct gcgcgagaag ctcgacggcg cgctgctgct cggcgtgtac gtgatggcac
     8821 cggtgctggc gatcgcctgg ctgctggtgc tggccctgtt ctacaccggg cacctgctgt
     8881 tcgccggcgc ctcgctgctg atgctgtgct tcttcctgta cggcagcctc ggcaacttcg
     8941 ccgcgttctt cgagctcgcc gccggcagcc atctcgaccg gcggcgcgac aacgcccgcc
     9001 tgctgccgct ggtcttgctg agcttcaccg tcagcctggt ggccgtgacc cgcgcgatgt
     9061 gctcggcggc gctggacgcc gtcgcccgcc gcgagctggt gtggcacaag accggacgct
     9121 tccgcaaatg acgccggcgc tgtggctgct gctgctgttc gcggcgaacg tggcgctgtt
     9181 ctgcctgccg ctgctgccgg ccttcgcgga gatgcgcaag cgcggcaacg cgccgctgtt
     9241 catccccgcc gacgacgaag ccggcatcgg ctatttcgcc gagcgcttcc gccagcgcct
     9301 cgccgccgac tggaacagcg cgacgctgtt cgagcccggt ggccccgggg atgcgggcta
     9361 cgtcgcgacg ctgggggcag cgcacgccgc gctgccggcc tcgatcgcca tccagtaccg
     9421 catggccgaa ggcgaactgc gcggcgcggc gcggctggac gcggcggagc agccgacggt
     9481 ggtcggcgga acgctgcggc tcgcccgcgg cacccacctg ctcggcgagg cctacgcgca
     9541 cgcgcgcctg gatgcgccgg gcggcagcgt gttgcgtgcg gtgctgtgcg acggcgaact
     9601 cgtgctcggg ccgggcagcg gcatcctgcg ctgggcgcat gcgcggcgca tcgccaccgg
     9661 agacggctcg cgcgcgatgg gccggctgtc ggcgacggaa tcgctttcgc tcggacgtgg
     9721 ctgccagttc gagcggctga gcgcgccgga gctgcgcttc ggcggcggcg cggcggcgca
     9781 ggacccgacg ccggcgtcga cgcgcgggtg ggtcgccgat cgccgcgcgc gggtcgtccg
     9841 cgaatcgctc gaccgcctgc tgtgcaacgg cgacgtctcg atcccgccgg gctcgctggt
     9901 cgacggccag ctgatcgtgc gcggccgcct caccctcggc gccggctgcc acgtgcgcgg
     9961 cgggatcaag gtgcatggcc ccgtcgcgct cggcgacgac gtcgtcgtca gtggcgcggt
    10021 gttcgcttcg ggcgatgcga cgttcggcat gcgctgcagc gtcgatggcc cggtgtcctc
    10081 cgccggcgtc gtgcgcctgg gggccggctg ccgcatcggg cgcatggagc accccacctc
    10141 gctggtcgcg ccggttgttt cggtcgcgcc cggctgcacc tgtcacggat cgatatgggc
    10201 acgcacgaac gggcgcgtgg acgcatgatg cgcaggctgc gactgctgct gcggccgcgc
    10261 gcgctgttgc cgctgctggc gggcatcgcg gtgctgttcg cgctcggccg gatcgcctac
    10321 caggtcgtcg gggaaccccc gcccgaacag gcgctgttcc tgctggtcga cgatcacagc
    10381 acgctggacg cgccgcaggt cggcctgtgg cgggacgccg cggatgaagt cggaatcccc
    10441 ttgcgggtgt tgcgcgcgtc cgaattcctg cgcccgcaac cctggccggc gacgccggtc
    10501 ggcatcgtcc tgcccgacgg gctgctgcgg cgtgcgtcgc gctcgctgac cgaacgcctc
    10561 gccgactacg cgcgcggcgg cggccgcctg atggtggtct acgacgccgc cacgcagacg
    10621 cccggcggcg gcgacgccgc cgaccatcgc gcgctgctgg cggacgcggt cggcatcgat
    10681 tacgcgctgt accgcgcact cggccagggg cagaccgtgc acgaagccgt gcagggcgat
    10741 cccgccttgc tgcgcgcact gcacgtgccg ccgggcaagt acatgccggt cgccgcgcca
    10801 gggccggcga cgatcacgag ctaccggtac ggcgcgatcg cctaccccgc cttcgccacg
    10861 cgcgggcgct acgccgggcg cgtgctgctg cagggccgca gcggcaacct cgtcgccggc
    10921 ctgcgcgact t
//
LOCUS       DATIQC010000025         4143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_142477, whole genome shotgun sequence.
ACCESSION   DATIQC010000025 DATIQC010000000
VERSION     DATIQC010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142477"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VLM17_00565"
     CDS             <1..596
                     /locus_tag="VLM17_00565"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSR64087.1"
                     /translation="RQEKVVRPRPTENAMPRLRWFLSGALAMLLALAAGMAAFVGSGR
                     YPIGADRPHLPLTLTLVDALRDRATEAAAKTIVVPRLGDPKQLAEGAAHYDEMCTGCH
                     LAPGRTTSELRAGLYPQPPDLPHDGIDDPAEAFWIIKHGIKLTAMPAWGKTHTDAQIW
                     ALVAFVDKLPTITPAQYRALTTRAEGAMPPEHAHDAR"
     gene            complement(656..2533)
                     /locus_tag="VLM17_00570"
     CDS             complement(656..2533)
                     /locus_tag="VLM17_00570"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HSR64088.1"
                     /translation="MPSRSHRGHLAGLLLTIALPCAAAGPAARGHCAAGADDMVGPRN
                     TRIDAVAHGLVPAVVSDRSVPQEIGARMRHYEVPGVSVAVIHDGRIEWARGWGVRDRD
                     SCAPVTPRTVFQAASISKSVAALAAMRLVQSGKLDLDQDINHALTSWTLPSDPALAPG
                     FVTLRQLLSHTAGTTVHGFPGYAWGEALPALTQILDGAPPANSPAVRMELPPGRQFRY
                     SGGGYLVAQQAMTDVAKLPYATLVAREVFGPLHMDRSGVAPEPPASAHGDVASGHNGM
                     RVVPGRFHRYPELAAAAVWTTPSDLARLLIGVQRAAAGAPSPILSQANARQMLARQTD
                     GGDIAAGWGLGFALAGEGAERRFGHDGRNEGFESTMTAYVERGDGVVVLTNGDRGKAL
                     ADEIVRAVANVYGFAGLGSRRVAEVAVPAETLARDAGFYSAGPIQVSIEHRDTHLYAR
                     IDGGSGEQLLALSPNRFITTYGGIVGEFQPGATPGAPAAGLRIIEGGPPVTLARTTLP
                     TDTLGKVRAFVRGAMNGWSTADPLVPAADGALVAEIALPAGSFDFKIAAEDWAQADFG
                     GTGDSAPIAGHVESLPLVAKGANLHLVIDAPGVYRFTVAAPGSDAPRLGVARVGDAAA
                     R"
     gene            complement(2841..>4143)
                     /locus_tag="VLM17_00575"
     CDS             complement(2841..>4143)
                     /locus_tag="VLM17_00575"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64089.1"
                     /translation="AQASPAELAGADGRRGQFYFNYVLQPIKNASGQVAAIFMEGNDV
                     TAAVKANHALREASRRKDEFLAMLAHELRNPLAPISAAADLLAVAGRDPDLVARMSAI
                     IARQVEHMTGLVDDLLDVSRVTRGLIRLHEQPLDIVSVVGDAVEQVRGLFLARHQHLT
                     LHLPAEAALVSGDRARLVQVLANLLNNAAKYTPEKGRIELRAEVEGQEVEIAVQDDGV
                     GIAPELLPHVFDLFTQAERSLDRTQGGLGLGLALVRSMVELHGGSVHAQSDGPGAGSR
                     FVVRLPCLGTQAAVADARREPVKPAPPRAPMRLLVVDDNVDAANSLCLLLEALGHHAM
                     VEHDAHGALARARSERPQLLFLDIGLPDMDGLELARRLRAMPETADAMFVAVTGYGQP
                     EDQVRTQAAGFDHHMTKPVKLPAILALIDECARRNVVSRAR"
BASE COUNT          557 a         1533 c         1486 g          567 t
ORIGIN      
        1 gccggcagga gaaggtggtg cgcccacgcc ccacggagaa cgccatgccc cgccttcgct
       61 ggttcctgtc cggcgcgctc gcgatgctgt tggcgttggc ggcgggcatg gcggcgttcg
      121 tcggttccgg ccgctacccg atcggtgccg accgcccgca cctgccgttg acgctcacgc
      181 tggtcgatgc gctgcgcgat cgcgccaccg aagccgcggc gaagacgatc gtggtgcccc
      241 ggctgggcga ccctaagcag ctcgccgaag gcgccgcgca ctacgacgag atgtgcaccg
      301 gctgccacct cgcgcccggc cgcaccacct ccgagctgcg cgcgggcctg tacccgcagc
      361 cgccggacct gccgcacgac ggcatcgatg accccgccga ggcgttctgg atcatcaagc
      421 acggcatcaa gctgaccgcg atgccggcct ggggcaagac ccacaccgat gcgcagatct
      481 gggcgctggt cgcgttcgtg gacaagctgc cgacgatcac gcccgcgcaa taccgcgcgc
      541 tgacgacgcg cgcggaaggc gcgatgccgc cggagcacgc gcacgacgcg cgctagcggc
      601 ccccgtccca tcgcctcggg cgggcggccc caccgggcag ctcccgctgc ctgcctcagc
      661 gcgcggctgc gtcgccgacg cgcgccacac ccagccgggg ggcatcgctg cccggcgccg
      721 ccacggtgaa gcggtacacg cctggcgcat cgatgacgag gtgcaggttc gcgcccttgg
      781 ccacgagcgg cagcgactcg acgtggccgg cgatcggcgc gctgtccccg gtgccgccga
      841 agtcggcctg cgcccagtct tcggcggcga tcttgaagtc gaagctgccg gccggcagcg
      901 cgatctcggc gacgagcgcg ccgtccgccg cgggcaccag cggatccgcc gtggaccacc
      961 cgttcatcgc gccgcgcacg aacgcgcgca ccttgccgag ggtgtcggtg ggtagggtcg
     1021 tgcgcgccag ggtgacgggc gggccgccct cgatgatgcg caggcccgcg gcgggcgcgc
     1081 cgggggtggc gcctggctgg aactccccga cgattccgcc ataggtggtg atgaagcggt
     1141 tgggcgagag tgcgagcagc tgctcgccgc tgccgccgtc gatgcgcgcg tacagatgcg
     1201 tgtcgcggtg ctcgatcgaa acctggatcg gcccggcgct gtagaaaccc gcgtcgcgcg
     1261 ccagggtctc cgcgggcacc gcgacctcgg ccacgcggcg gctgcccagc cccgcgaaac
     1321 cgtagacgtt cgcgaccgca cgcacgatct catcggccag cgccttgccg cggtcgccat
     1381 tggtcagcac cacgacgcca tcgccgcgct cgacgtacgc ggtcatcgtc gactcgaatc
     1441 cttcgttgcg gccgtcgtgg ccgaagcgcc gctcggcgcc ctcgcccgcc agcgcgaagc
     1501 ccagtcccca gcccgcggcg atgtcgccgc catcggtctg ccgcgcgagc atctggcgcg
     1561 cattggcctg cgacaggatc ggggacggcg cgccggccgc agcgcgctgc acgccgatga
     1621 gcaggcgcgc gagatccgac ggcgtggtcc ataccgcggc ggcggccagc tcggggtagc
     1681 ggtggaagcg cccgggcacc actcgcatgc cgttatggcc gctggcgacg tcaccatgcg
     1741 cggacgccgg cggttccggc gcgacgccgc tgcggtccat gtgcagcggt ccgaacacct
     1801 cgcgcgcgac cagggtggca tacggcagtt tcgccacgtc ggtcatcgcc tgctgcgcga
     1861 cgaggtagcc gccgccggaa taacggaact gcctgcccgg tggcagctcc atgcgcacgg
     1921 ctgggctgtt ggccggcggc gcgccgtcga ggatctgcgt cagcgcgggc aacgcctcgc
     1981 cccacgcata accggggaag ccgtgcacgg tggtgccggc ggtgtggctg agcaactggc
     2041 gcagggtgac gaagcctggc gccagcgccg gatccgacgg caacgtccag gacgtcagcg
     2101 catggttgat gtcctggtcg aggtcgagct tgccggactg caccagccgc atcgccgcga
     2161 gcgccgccac gctcttgctg atcgaggcgg cctggaacac ggtgcgcggc gtcaccggcg
     2221 cgcagctgtc gcggtcgcgc accccccagc cccgcgccca ctcgatccgg ccgtcgtgga
     2281 tcacggccac gctcacgccc ggtacttcgt aatggcgcat gcgcgctccg atctcctgcg
     2341 gcacggaccg gtcggagacg acggccggca cgaggccgtg cgcgaccgca tcgatgcgcg
     2401 tgttgcgagg cccgaccatg tcgtcggccc cggccgcgca gtggccccgg gcggcaggcc
     2461 cggccgccgc gcacggcagg gcgatcgtca gcaagaggcc ggccaggtgg ccgcggtgcg
     2521 agcgagacgg catgcgaagt ttcctgtatg ggtgcgagcg ctgcgagcgc agctgcgagg
     2581 cattccgccg tggcgtcacg ccacgaccgg cagcggcggc ctgcggtgcc gccggcaccg
     2641 cgccgcctcc gccagggaga aacgaacggg cacggccgca gtcacgtcga ttgcctcgcg
     2701 catccgtttc ccctttgacg gcggtcgccg gcgcggtttg cgcgcggtcc tgcacggtca
     2761 ggcgacgatg cgggacaagc gcaagccgcg caaggccgtc gccgcatggg cgcgcacccg
     2821 gcgccggagt cgcagcgtgg tcaacgcgcc cgcgagacta cgttccggcg ggcgcactcg
     2881 tcgatcagcg ccaggatggc cggcagcttc acgggcttgg tcatgtggtg gtcgaagcct
     2941 gccgcctgcg tgcgtacctg gtcctccggc tggccgtatc cggtgaccgc gacgaacatc
     3001 gcatccgccg tctccggcat cgcgcgcagg cgtcgcgcca gctccaggcc gtccatgtcg
     3061 ggcagcccga tgtcgaggaa cagcagctgt ggccgttcgc tgcgcgcccg cgcgagggcc
     3121 ccgtgcgcgt cgtgctccac catggcgtgg tggcccagcg cctccagcag caggcacagc
     3181 gagttcgccg cgtcgacgtt gtcgtcgacc accagcagtc gcatcggtgc gcgcggcggc
     3241 gccggcttga ccggctcgcg gcgtgcgtcc gccaccgccg cctgcgtgcc caggcagggc
     3301 aggcgcacga cgaagcggct gcccgcgccc ggtccgtcgc tctgcgcatg gacgctgccg
     3361 ccatgcaact ccaccatgct ccgcaccagc gccaggccca aacccagccc tccctgcgtg
     3421 cgatcgagcg agcgttcggc ctgggtgaac aggtcgaaga cgtgcggcag cagttccggc
     3481 gcgatgccca cgccatcgtc ctgcaccgcg atctcgacct cctgcccctc cacttcggcc
     3541 cgcagttcga tccgtccttt ctcgggggtg tacttggcgg cgttgttgag caggttggcg
     3601 agcacctgga cgagccgcgc gcgatcgccg gacaccaggg ccgcctccgc gggcaggtgc
     3661 agggtcaggt gctggtgccg ggccaggaac aggccccgca cctgttcgac cgcatcgccg
     3721 acgacgctga cgatgtcgag cggctgctcg tgcagccgga tcaggccgcg ggtgacgcgc
     3781 gagacgtcca gcaggtcgtc caccagcccg gtcatgtgct ccacctggcg ggcgatgatg
     3841 gcgctcatcc tcgccaccag gtcgggatcc cggccggcca cggcgagcag gtcggcggcg
     3901 gcgctgatcg gcgcgagcgg gttgcgcagc tcgtgcgcca gcatcgcgag gaattcgtcc
     3961 ttgcgccggc tggcctcgcg caacgcatgg ttggccttca ccgcggcggt gacgtcgttg
     4021 ccctccatga agatggcggc gacctgcccg gaggcgttct tgatcggctg cagcacgtag
     4081 ttgaaataga actggccgcg cctgccgtcg gcgccggcca gttccgccgg cgacgcctgc
     4141 gcg
//
LOCUS       DATIQC010000026         6443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_566571, whole genome shotgun sequence.
ACCESSION   DATIQC010000026 DATIQC010000000
VERSION     DATIQC010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6443
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566571"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..90
                     /locus_tag="VLM17_00580"
     CDS             <1..90
                     /locus_tag="VLM17_00580"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901090.1"
                     /note="catalyzes the formation of
                     pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose
                     1-diphosphate from nictinate D-ribonucleotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide diphosphorylase"
                     /protein_id="HSR64090.1"
                     /translation="DGVDYISIGALTKHVRAIDLSMKLGPPPR"
     gene            complement(204..1001)
                     /locus_tag="VLM17_00585"
     CDS             complement(204..1001)
                     /locus_tag="VLM17_00585"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HSR64091.1"
                     /translation="MTGGDMKLVFPGGEHPQVLLGPGVNRVGSDPHANIVLDRPGVQP
                     QHCELHVTAHGVTLHVPHGTTVSVNGRAVDGLIALRPGDSVSFDRIQARLATIDAASP
                     SHRHEGSLPAPANDDPGATAVRPVLPKYVLRGVSGEGFGRSYPLVGPTVVGRAPECVL
                     RLDEAGLSRQHARLVPTNDGLQIEDLGSTNGTFVNGKRVQRAFAKPGDEVGFDTLRFH
                     LSAPGQPDPQHVAASKVAKPRPSVSPWWWVGVAALGLAAIWVAALLR"
     gene            1090..1416
                     /locus_tag="VLM17_00590"
     CDS             1090..1416
                     /locus_tag="VLM17_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009598110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3301 domain-containing protein"
                     /protein_id="HSR64092.1"
                     /translation="MPTLLLLMILFGTGFAFWSTARAAAERAGEVGRGACEAAGVQWL
                     DQTVHASGLRLCRGEDGRLGFERSFRFEYSEDGVDRHVGRLVLRGDRLVSFSGPARAT
                     PVVRLH"
     gene            complement(1494..1931)
                     /locus_tag="VLM17_00595"
     CDS             complement(1494..1931)
                     /locus_tag="VLM17_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HSR64093.1"
                     /translation="MTDAAHARTSHRPYLLRALYEWIADNGMTPHLLVDAAQPGVQVP
                     SHAVKDGKVVLNIAARAVATLELGNEVVRFTARFGGVSYPVVVPVAAVLAIYARETGP
                     GMALPDDNLATGGVEEEPSLPPEDGGDAPEPPRRGPPHLRVVK"
     gene            complement(2050..2685)
                     /locus_tag="VLM17_00600"
     CDS             complement(2050..2685)
                     /locus_tag="VLM17_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003468210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HSR64094.1"
                     /translation="MATSPRMRNALTLFSSVDDVLCHRVRLVLAAKGVTYDLIPVDPQ
                     NPPEDLIDLNPYHSVPTLVERELVLYAASVVSEYLDERYPHPPLMPVDPLSRARLRLA
                     MLRIEHDWVPQVQAIQLGNKQQAEAGRKRLKELLTASVPLFKASKFFLNPEMSLADCA
                     MAPIIWRLDALGVGLPKDGKAIEDYGNRIFRNPGFTRSLTPQERNLRELPA"
     gene            complement(2921..3676)
                     /locus_tag="VLM17_00605"
     CDS             complement(2921..3676)
                     /locus_tag="VLM17_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006449542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HSR64095.1"
                     /translation="MTKLRQLSTRLLPALFAAGLLLAGPALAEEGEAFPHAGTDITDK
                     ASLQRGAQLFMNYCSGCHSLKYLRYQRMGEDLGLTADEVQDNLNLHGGKIGDHVEVSM
                     TEDMGKQAFGKMPPDLSLVARVRGTDWVAAYLRSFYLDESRPVGWNNTVFPNASMPNP
                     LWQMQGLQHAEYGKADASGERPVEKLVLATPGAQTPEQFDQTVRDITTFLEYAGEPAA
                     LQRQDLGVWAVLFLAFFTFLAWLLKKEYWRDVH"
     gene            complement(3669..4940)
                     /locus_tag="VLM17_00610"
     CDS             complement(3669..4940)
                     /locus_tag="VLM17_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007965674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HSR64096.1"
                     /translation="MANFLTRTATGVMDWVNARAPGMMPVYRKHMTEYYAPKNFNFWY
                     YFGSLALLVLVNQIVTGIFLTMHFKPAADQAFASVEYIMRDVEWGWLIRYMHTTGASL
                     FFIVVYLHMFRGLMYGSYKKPRELVWLLGMVIYLVLMAEAFMGYVLPWGQMSFWGAKV
                     IISLFGAIPVIGQGLTEWIMGDYLPSDATLNRFFALHVIALPLVLLLLIVLHLGALHE
                     VGSNNPDGVEIKKSPKGNRWSTTAPADGIPFHPYYTVKDLFGVGIFLTIAAFIIFFAP
                     TFGGWFLEHDNFTEANRLVTPSHIKPVWYFTPYYAMLRVVPSFFAIKLWGVLVMFGAI
                     VLLFLVPWLDKSQVKSFRYRGKLSWAMLAMLVVCFVWLGKIGAGPGTDPVETIIGRIL
                     TFLYFVFFITMPLWTKHDKTKPVPERVTTHD"
     gene            complement(4944..5570)
                     /gene="petA"
                     /locus_tag="VLM17_00615"
     CDS             complement(4944..5570)
                     /gene="petA"
                     /locus_tag="VLM17_00615"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009598116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HSR64097.1"
                     /translation="MGNDGVENQGRRRFLTATTAVVGAVGAGFVAVPFIKSWNPSAKA
                     KLAGAPITADITALAEGTRMVLEWRGQPIWIVKRSKAILDALPQLDSRLRDPQSKNLD
                     QQPGYVLKGDYHFRSIKPDISVLVGLCTHLGCSPEMKAEIKPEPFDPNWKGGYFCPCH
                     KSRFDMSGRVFDGVPAPINLLVPPHHYESDTSIVIGVDPSSSNSAGGA"
     gene            complement(5703..>6443)
                     /locus_tag="VLM17_00620"
     CDS             complement(5703..>6443)
                     /locus_tag="VLM17_00620"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010486123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HSR64098.1"
                     /translation="IPTPLPAAAGAAGTSVPVAGSPVSASVPAGPAPKPAAMPGTPAQ
                     AAASYAPPRRLVTGQVYAYVEDGVRHYTSRPPRGGAGISGLRTIRYSFMETCYACAAR
                     PGVDFRTLSLNTSSYQAEIAQAARDYGVEEAVVRAIIHAESAFNPNALSRVGAQGLMQ
                     LMPGTARRFGVGNAFDAAQNIRGGVQYLAWLLKRFNGNVALAAAGYNAGEGAVDKYGG
                     VPPYTETQRYVQRVGILAERYRGLIAAR"
BASE COUNT         1001 a         2137 c         2312 g          993 t
ORIGIN      
        1 gacggcgtcg actacatctc gatcggcgcg ctgaccaagc acgtgcgcgc gatcgacctg
       61 tcgatgaaac tcgggccgcc gccgcgctga ctcgcggcgc tgccgggtgg tagcccggac
      121 aagcgcagcg cacccggggc aaggtcctga tgtcgcggtt cccgggtgcg cccttcgggt
      181 ttacccgggc tatgcgctcc ggatcagcgc agcagcgccg ccacccagat cgccgccagg
      241 ccgagcgcgg cgacgccgac ccaccaccat ggcgacaccg acgggcgcgg cttggccacc
      301 ttgctggcgg ccacgtgctg gggatcgggc tggcccggcg cggagaggtg gaagcgcagg
      361 gtgtcgaagc cgacctcgtc gcccggcttg gcgaaggcgc gctgcacgcg cttgccgttg
      421 acgaaggtcc cgttggtcga gccgaggtcc tcgatctgca ggccgtcgtt ggtcggcacc
      481 agccgcgcgt gctggcgcga caggccggcc tcgtccaggc gcagcacgca ttcgggcgcg
      541 cgcccgacca cggtcgggcc gaccagcgga tagctgcggc cgaagccttc gcccgaaact
      601 ccgcgcagca cgtacttcgg cagcaccggc cgcaccgcgg tggcgccggg gtcgtcgttg
      661 gccggcgccg gcaggctgcc ttcgtgccgg tgcgacggcg aggccgcgtc gatcgtcgcc
      721 aggcgcgcct ggatgcggtc gaaactgacg ctgtcgcccg ggcgcagcgc gatcaggccg
      781 tcgaccgcgc ggccgttgac gctgaccgtc gtgccgtgcg gcacgtgcag ggtgacgccg
      841 tgcgcggtga cgtgcagttc gcagtgctgc ggctgcacgc cgggacggtc gaggacgatg
      901 ttggcgtgcg ggtcggatcc cacccggttg accccggggc cgagcagcac ttgcggatgt
      961 tcaccgccgg gaaagacgag cttcatgtcg ccaccggtca tgggaaagga cgagagcgtg
     1021 gtcacgcaag cgtgaagacg atgcaaagtt tagcttgccc gccaaggctg gcgaccgcaa
     1081 agtgaataca tgcccacttt gcttctgttg atgatcctgt ttgggaccgg gttcgcgttc
     1141 tggagcaccg cgcgcgcggc ggccgaacgc gccggcgagg tcggccgcgg cgcctgcgag
     1201 gcggccgggg tccaatggct ggaccagacc gtgcacgcca gcggcctgcg cctgtgccgc
     1261 ggcgaggacg gacggctggg cttcgagcgg agcttccgtt tcgaatactc cgaggacggc
     1321 gtggaccggc atgtcggccg gctggtgctg cggggcgacc ggctggtgtc cttcagcggg
     1381 ccggcccggg cgaccccggt ggtccggctg cactaggggc ccgcgtcgcc gccggacgcc
     1441 gaccgtccgg cgcgatccgg ccggaccgca gcccggcggc ggccgttccg cggctacttg
     1501 accacccgca ggtgcggggg accgcgccgc ggcggctcgg gcgcgtcgcc gccgtcctcg
     1561 ggcggcagcg acggctcttc ctccaccccg ccggtcgcga ggttgtcgtc cggcaacgcc
     1621 atgcccggcc cggtttcgcg cgcgtagatc gccagcaccg cggccaccgg gaccaccacc
     1681 ggatagctga cgccgccgaa gcgcgcggtg aagcgcacca cctcgttgcc cagttccagc
     1741 gtggcgaccg cgcgggcggc gatgttgagc acgaccttgc cgtccttgac cgcgtgcgaa
     1801 ggcacctgca cgccgggttg cgccgcatcg acgagcaggt gcggggtcat gccgttgtcg
     1861 gcgatccact cgtacagcgc ccgcagcagg taagggcgat ggctggtcct ggcgtgggcg
     1921 gcatcggtca tggcgcgagt gtagcgggtc gaatgcggaa gtctgcggac cggcgcctcg
     1981 gaaccggctc gtctgccgga aacgaaaaag cccgcgggaa gcgggctttt tcgaggattc
     2041 cccgcgccct caggcgggca gctcgcgcag gttgcgttcc tgcggggtga ggctgcgggt
     2101 gaagcccgga ttgcggaaga tgcggttgcc gtaatcctcg atcgccttgc cgtccttcgg
     2161 caggccgacc ccgagcgcgt ccagccgcca gatgatcggt gccatcgcgc agtcggccag
     2221 gctcatctcg ggattgagga agaacttgct ggccttgaac agcggcaccg acgcggtcag
     2281 cagttccttg aggcgcttgc ggccggcttc ggcctgctgc ttgttgccga gctggatcgc
     2341 ctgcacctgc ggcacccagt cgtgctcgat gcgcagcatg gccaggcgca ggcgcgcgcg
     2401 cgacagcgga tcgaccggca tcagcggcgg atgggggtag cgctcgtcga ggtattcgct
     2461 gacgaccgac gcggcgtaca gcaccagctc gcgctcgacc aaggtcggca ccgagtggta
     2521 ggggttgagg tcgatcaggt cctcgggcgg gttctgcgga tcgaccggga tcaggtcgta
     2581 ggtgacgccc ttggcggcca gcaccaggcg cacgcggtgg cagaggacgt cgtcgacgga
     2641 ggaaaacagg gtcagtgcgt tacgcatgcg cggactcgtc gccatcatgg gctctctccc
     2701 gcgattggat ccgccaatcg catccggcgc cgcccacccc gtgcaggcgg tcgccccgtg
     2761 ttccgatctt tccccttccc ctacttacct tgacccggcc gcaccggcaa gtccggtgcg
     2821 gcgggtactc cgctcgaaat ccaacgcgac atatctactt cagcggttgt tccttgaaaa
     2881 gtccgcacgt ggatgtgcgg gctcttgcga gggactcgca tcaatgcacg tcgcgccagt
     2941 actccttctt cagcagccag gcgaggaagg tgaagaacgc caggaacagc accgcccaca
     3001 cgccgaggtc ctggcgctgg agcgcggcgg gctcgccggc gtactcgagg aacgtggtga
     3061 tgtcgcgcac ggtctggtcg aactgctcgg gcgtctgcgc gcccggcgtg gccagcacca
     3121 gcttctcgac cgggcgttcg ccgctggcgt cggccttgcc gtattcggcg tgctgcaggc
     3181 cctgcatctg ccacagcggg ttcggcatcg aggcgttcgg gaacaccgtg ttgttccagc
     3241 ccaccggacg cgactcgtcg aggtagaacg acctgaggta cgcggcgacc cagtcggtgc
     3301 cgcgcacgcg cgccaccagg ctcaggtccg gcggcatctt gccgaaggcc tgcttgccca
     3361 tgtcctcggt catcgagact tcgacatggt cgccgatctt gccgccgtgc aggttgaggt
     3421 tgtcctgcac ctcgtccgcg gtcaggccga ggtcctcgcc catgcgctgg tagcgcaggt
     3481 acttgagcga atggcagccc gagcagtagt tcatgaacaa ctgcgcgcca cgctgcagcg
     3541 acgccttgtc ggtgatgtcg gtgccggcgt gcgggaaagc ctcgccttcc tcggcgagcg
     3601 cgggaccggc gaggaggagg ccggcggcga acagtgccgg cagcaggcgg gtcgaaagct
     3661 ggcgcagctt agtcatgcgt cgtcacccgt tccggcaccg gcttggtctt gtcgtgcttg
     3721 gtccacagcg gcatggtgat gaagaacacg aagtacagga aggtcaggat gcggccgatg
     3781 atcgtctcga ccgggtcggt gcccgggccc gcgccgatct tgccgagcca cacgaagcag
     3841 acgacgagca tggccagcat cgcccacgac agcttgccgc ggtagcggaa cgacttgacc
     3901 tggctcttgt ccagccacgg cactaggaac agcaggacga tcgcgccgaa catcaccagc
     3961 acgccccaca gcttgatcgc gaagaacgag gggacgacgc gcagcatcgc gtagtacggg
     4021 gtgaagtacc acaccggctt gatgtgcgac ggcgtcacca ggcggttggc ctcggtgaag
     4081 ttgtcgtgct cgaggaacca gccgccgaag gtcggcgcga agaagatgat gaaggcggcg
     4141 atggtcagga agatgccgac gccgaacagg tccttgaccg tgtagtacgg atggaagggg
     4201 atgccgtcgg ccggcgcggt ggtcgaccag cggttgccct tcgggctctt cttgatctcg
     4261 acgccgtccg ggttgttcga gccgacttcg tgcaacgcgc ccaggtgcag cacgatcagg
     4321 aggagcagga cgagcggcag cgcgatgaca tgcagcgcga agaagcggtt gagcgtcgcg
     4381 tcgctgggca ggtagtcgcc catgatccac tcggtcaggc cctgcccgat caccgggatc
     4441 gcgccgaaca gcgaaatgat caccttcgcg ccccagaacg acatctggcc ccacggcagc
     4501 acgtagccca tgaaggcctc ggccatcagc acgaggtaga tgaccatgcc gagcagccac
     4561 accagttcgc gcggcttctt gtacgagccg tacatcaggc cgcggaacat gtgcaggtag
     4621 acgacgatga agaacagcga ggcgccggtc gtgtgcatgt accggatcag ccagccccac
     4681 tccacgtcgc gcatgatgta ctcgaccgac gcgaacgcct ggtccgcggc cggcttgaag
     4741 tgcatcgtca ggaagatgcc ggtgacgatc tggttgacca gcaccagcag cgcgagcgag
     4801 ccgaagtagt accagaagtt gaagttcttc ggcgcgtagt actcggtcat gtgcttgcgg
     4861 tacaccggca tcatgccggg cgcgcgcgcg ttgacccagt ccatcacgcc ggtggcggta
     4921 cgggtgagga aattcgccat ggattacgcg ccccccgcgc tgttggacga cgaggggtcg
     4981 acgccgatga cgatcgacgt gtcgctctcg tagtggtgcg gcggcaccag caggttgatc
     5041 ggcgcgggaa cgccgtcgaa gacgcggccc gacatgtcga agcgcgactt gtggcagggg
     5101 cagaagtagc cgcccttcca gttcgggtcg aacggctcgg gcttgatctc ggccttcatc
     5161 tccggcgagc agcccaggtg cgtgcacagg ccgaccagca ccgagatgtc cggcttgatc
     5221 gagcggaagt ggtagtcgcc cttgagcacg tagcccggct gctggtcgag gttcttcgac
     5281 tgcgggtcgc gcaggcggct gtccagctgc ggcagcgcgt cgaggatggc cttggaccgc
     5341 ttgacgatcc agatcggctg gccgcgccac tcgagcacca tgcgggtgcc ctcggccagc
     5401 gcggtgatgt cggcggtgat cggcgcgccg gccagcttgg ccttggcgct cggattccac
     5461 gacttgatga acggtaccgc cacgaacccg gcgcccaccg cacccaccac ggccgtggtc
     5521 gcggtcagga accggcgtcg gccctggttt tcgaccccat cattgcccat caggcactcc
     5581 gcaagacttt cgaatcacag gctggcgagg cccgcgggcg cgggcgtcgc aaagacggtg
     5641 aagtgtagcg gaacgctgaa tgccacgaca atgtttgggc cgggcgcgcc cggccgggcc
     5701 gctcagcgcg cggcgatcag gccgcggtag cgctcggcga ggatgccgac ccgctgcacg
     5761 tagcgctggg tttcggtgta gggcgggacg ccgccgtact tgtcgaccgc cccctcgccg
     5821 gcgttgtagc cggccgcggc gagggcgacg ttgccgttga agcgcttgag cagccaggcg
     5881 aggtactgca ccccgccgcg gatgttctgc gcggcatcga aggcgttgcc gacgccgaag
     5941 cggcgcgcgg tgcccggcat cagctgcatc aggccctgcg cgcccacccg cgagagcgcg
     6001 ttcgggttga acgccgactc cgcatggatg atcgcccgca ccaccgcttc ctcgacgccg
     6061 taatccctgg ccgcctgggc gatttccgcc tggtaggaag aggtgttgag gctgagggtg
     6121 cggaagtcca cgcccgggcg cgcggcgcag gcgtagcagg tctccatgaa gctgtagcgg
     6181 atcgtgcgca gcccgctgat ccccgcgccc ccgcgcggcg gccggctcgt gtagtggcgg
     6241 acgccgtcct cgacgtaggc atagacctgg ccggtgacca ggcggcgcgg cggagcgtag
     6301 gaagccgcgg cctgcgcggg cgtgcccggc atggcggccg gcttcggcgc cggacccgcc
     6361 ggcacgctgg ccgacaccgg cgacccggcc acgggaaccg acgtgccggc agcgccggcg
     6421 gcggccggca gcggcgtcgg gat
//
LOCUS       DATIQC010000027         2007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_283949, whole genome shotgun sequence.
ACCESSION   DATIQC010000027 DATIQC010000000
VERSION     DATIQC010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283949"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(87..986)
                     /gene="htpX"
                     /locus_tag="VLM17_00625"
     CDS             complement(87..986)
                     /gene="htpX"
                     /locus_tag="VLM17_00625"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HSR64099.1"
                     /translation="MLKRLMLFLLTNLAVLALVSVVMSLLGVNASQFGGLLVMAALFG
                     FGGSIVSLLLSKWVARTFTRAQVIETPRNEGEQWLLSTVRRHAEKAGIGMPEVAIYDA
                     PEINAFATGANRNHALVAVSTGLLRAMERNEAEAVLGHEVSHVANGDMVTMALLQGVL
                     NTFVIVLARVVGRVVDGFLGGDREGPGFGYYIIVFLLEMVFGLFASMIAMWFSRHREF
                     RADAGGATLAGRDKMIAALERLAQTYGTSTLPKQVAAFGISGGVGRGFQRLLMSHPPL
                     DERIAALRDALLDGRAVREGVVA"
     gene            1089..1982
                     /gene="gluQRS"
                     /locus_tag="VLM17_00630"
     CDS             1089..1982
                     /gene="gluQRS"
                     /locus_tag="VLM17_00630"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016904480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HSR64100.1"
                     /translation="MQGYRGRFAPSPTGPLHFGSLLAALGSWLLARHAGGEWLVRIED
                     IDPPREVAGAADAQLRTLAAFGFESDLPVVRQAGRGAAYRAALDRLLARGDAFVCHCS
                     RSALAADGGVHRACVAGAARGDPAVRFRVPEGVVGFDDAIQGHVTQDVARAVGDFVLR
                     RAEGLWAYQLAVVVDDAAQGITDVVRGADLLDSTPRQILLQRALGLPRPRYAHLPLVV
                     DAEGRKLSKSLAAIAVDDADPLPALRAAWRALGQEPGALGAARSSAALLEAARRGFDP
                     ARIPRGPWAAAAHNTTATGAA"
BASE COUNT          273 a          739 c          723 g          272 t
ORIGIN      
        1 gtaggaccgg cggccgcagc cgtcgatcca gggaaaaagc ccgcgtccgg cgggcttttt
       61 ccttgcctgg ccccggcgct tccgcctcac gccacaacgc cctcgcgcac cgcgcgcccg
      121 tccagcagcg cgtcgcgcag cgcggcgatg cgctcgtcca gcggcggatg gctcatcagc
      181 aggcgctgga agccacggcc gaccccgccg ctgatgccga aggccgccac ctgcttgggc
      241 agcgtgctgg tgccgtaggt ctgcgccagg cgctcgagcg cggcgatcat cttgtcgcgc
      301 ccggccagcg tggcgccgcc ggcatcggcg cggaactcgc gatggcgcga gaaccacatg
      361 gcgatcatgc tggcgaacag gccgaacacc atctccagca ggaacacgat gatgtagtag
      421 ccgaagccgg gcccttcgcg gtcgccgccc aggaagccgt cgacgacgcg gccgaccacc
      481 cgcgcgagca cgatcacgaa cgtgttgagc acgccctgca gcagcgccat cgtcaccatg
      541 tcgccattgg cgacgtggct gacctcgtgg ccgagcacgg cctcggcctc gttgcgctcc
      601 atcgcccgca gcaggccggt cgagaccgcg accagcgcgt ggttgcggtt ggccccggtg
      661 gcgaaggcat tgatctccgg cgcgtcgtag atggcgacct cgggcatgcc gatgccggcc
      721 ttctcggcgt ggcggcggac ggtggacagc agccactgct cgccttcgtt gcgcggggtt
      781 tcgatcacct gcgcgcgggt gaaggtcctg gccacccact tcgacagcag cagcgagacg
      841 atcgagccgc cgaaaccgaa cagcgcggcc atcaccagca ggccgccgaa ctggctggca
      901 ttgacgccga gcagcgacat caccacgctg accagggcga gcacggccag gttggtgagc
      961 aggaacaaca tgaggcgctt gagcatgccg ggcttccatc gcggccgcgc accgtgcgcg
     1021 gcgtccgcgt gaaggtgcgg tagtcgcttg ccgaattcaa gtcgatgacg tcattcccga
     1081 cagcttccat gcagggctac cgcgggcgct tcgcgccctc gcccaccggc ccgctccact
     1141 tcggctcgct gctcgcggcc ctgggcagct ggctgctcgc gcgccacgcc ggcggcgagt
     1201 ggctggtgcg gatcgaggac atcgatccgc cgcgcgaggt cgccggggcg gcggatgcgc
     1261 agctgcgcac gctggcggcc ttcggcttcg aatccgacct gccggtcgtc cgccaggcgg
     1321 gccgcggcgc ggcgtaccgc gccgcgctgg accgcctgct cgcccgcggc gacgccttcg
     1381 tctgccactg cagccgcagc gcgctcgcgg ccgatggcgg cgtgcaccgc gcctgcgtgg
     1441 cgggcgcggc gcgcggcgat ccggcggtgc ggttccgcgt gccggagggc gtcgtgggct
     1501 tcgacgatgc gatccagggg catgtcaccc aggacgtcgc ccgcgccgtc ggggacttcg
     1561 tcctgcgccg cgccgaaggg ctctgggcgt accagctcgc ggtcgtcgtc gacgacgccg
     1621 cgcagggcat caccgacgtg gtccggggcg ccgacctgct cgattcgacg ccgcggcaga
     1681 tcctgctgca gcgcgcgctc gggctgccgc ggccgcgcta tgcgcacctg cccctggtcg
     1741 tcgacgcgga gggcaggaag ctgtcgaaat cgctggccgc gatcgcagtc gacgacgccg
     1801 atccgctgcc cgccctgcgc gcggcgtgga gggcgctggg gcaggaacca ggcgccctgg
     1861 gcgccgcccg ctcgagcgcg gcgctgctgg aggcggcccg gcgcggcttc gatccagccc
     1921 ggatcccgcg cgggccgtgg gctgccgcgg cgcacaacac gactgcaaca ggcgctgcct
     1981 agaatcaggc cgggccacta cagtccg
//
LOCUS       DATIQC010000028         2293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_495917, whole genome shotgun sequence.
ACCESSION   DATIQC010000028 DATIQC010000000
VERSION     DATIQC010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495917"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            299..874
                     /locus_tag="VLM17_00635"
                     /pseudo
     CDS             299..874
                     /locus_tag="VLM17_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019238012.1"
                     /note="This protein belongs to the uracil DNA glycosylase
                     superfamily, members of which act in excision repair of
                     DNA. However, it belongs more specifically to UdgX branch,
                     whose founding member was found to bind uracil in DNA
                     (where it does not belong), without cleaving it, appears
                     to promote DNA repair by a pathway involving RecA, rather
                     than base excision.; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UdgX family uracil-DNA binding protein"
     gene            complement(829..1416)
                     /locus_tag="VLM17_00640"
     CDS             complement(829..1416)
                     /locus_tag="VLM17_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64101.1"
                     /translation="MGIPALLWWLLGGVVFPAWLLSGCADYLCHARTDIAHTSGRHES
                     ALHLLQTAEIGLPVLLFLFFEVDALVLSVLLAGVVAHTATSWADLRWATPRREITPGE
                     QYVHSFLNVLPWIALSLVAVLHWPVVAAMFDPAVASDWGLRLRRPAFPLPLLAAVLAA
                     SLLLGVLPGLWEYARTVAAARHASSSSARSATKPR"
     gene            complement(1422..1784)
                     /locus_tag="VLM17_00645"
     CDS             complement(1422..1784)
                     /locus_tag="VLM17_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64102.1"
                     /translation="MDAMLMLRTAAWLFVLAALGGLTMAGIRFVGQRNPPVWLSMLHG
                     FAAGAGATLLAYAVATAVVPGAAKASLLLFLVAAGGGVLMALAYQWQRRLLPAWLVLV
                     HALVAVAGFVLLLVAAFG"
     gene            complement(1892..>2293)
                     /locus_tag="VLM17_00650"
     CDS             complement(1892..>2293)
                     /locus_tag="VLM17_00650"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSR64103.1"
                     /translation="IAARHAPLVEAIKPFAAEQLSAEEMDGARAAAAIMAMNNIYYRA
                     THLIHNDEYGTMRAGLRMNILARPGLDKAGFELCCLAVSAINGCGACLDSHERTVREH
                     GVTAQGVQSALKIASVLHAVAVTAEQAQAAA"
BASE COUNT          355 a          834 c          837 g          267 t
ORIGIN      
        1 cgcgacggcg tgccgctggc gtcgctggcg ggcggtgagg tgctgttcga cgcggatctc
       61 gcgccggacg aacagcagcg cgcccgcaag gtgctgttgc gcgaaccgga gccggcgttc
      121 gtcttcgaca tccaggcacc ggtggcctga ccttcaggcc ccttgcaccg gtcgccgccg
      181 aagatgcggc atggccacgc gcaagccgcc cgtgcgtctc cccgcccgac gggcgccggc
      241 caggcccccg cgccggcgcg tcgtgcccga gggcagcgcc cccgaacccg ccgacggcag
      301 cctcgccgcc ttgcgcgagg ccgcggccgg atgcaggcgc tgtcccttgt ggaagccagc
      361 cacgcagacg gtattcggcg aaggcccggc gaaggcgcgc gtgctggtcg tgggcgagca
      421 gaccggcgac caggaggacc tggccgggcg cccgttcgtc gggccggcgg ggcaactgtt
      481 cgaccgcgcg ctggaggaac tgggcatcga ccgaagccgg ttctacgtga ccaatgcggt
      541 gaagcacttc aagttcgagc gccgcggcaa ggtgcgcctg cacaagagcc ccaatcccgc
      601 cgagcaggcc gcgtgccgga tctggctgga aggcgagctc gcgcgcatca agcccgatac
      661 cgtcgtctgc ctcggcgcga tcgccgcgcg caacgtgctg ggaacgaagt tccgcctgat
      721 ggcgcagcgc ggcacctggc aggcgctcgc cgagggcacg cgcgtggtcg cgaccgtgca
      781 tccgtccttc gtgctgcgcc agcgtggtcc ggacgcgcgg cacgcggcct atcgcggctt
      841 cgtcgccgac ctcgcgctgc tgctggatgc gtgacgcgcc gccgcgacgg tgcgcgcgta
      901 ttcccacaac cccggcagca cgccgagcag cagcgacgcg gcgagcaccg ccgccagcag
      961 cggcagcggg aaggcgggtc ggcgcaggcg caggccccag tcggaagcga ccgccggatc
     1021 gaacatcgcc gcgaccaccg gccagtgcag caccgccacc agcgacagcg cgatccacgg
     1081 cagcacgttg aggaagctgt gcacgtactg ctcgcccggc gtgatctcgc gtcgcggcgt
     1141 cgcccagcgc aggtcggccc acgaggtggc ggtgtgcgcg acgacgccgg ccagcagcac
     1201 cgaaagcacc agcgcatcga cttcgaagaa caggaacagc agcaccggaa ggccgatctc
     1261 cgccgtctgc agcaggtgca gcgccgactc gtggcggccg gaggtgtgcg cgatgtcggt
     1321 acgcgcgtgg cagaggtaat cggcgcagcc ggacagcagc caggccggga acaccacgcc
     1381 gccgagcagc caccacagca gcgccgggat gcccatgcgc ttcagccgaa cgccgccacc
     1441 agcagcagca cgaagccggc cacggcgacc agtgcatgca ccagcaccag ccacgccggc
     1501 agcaggcggc gttgccattg gtaggccagc gccatcagca cgcccccgcc cgcggcgacg
     1561 aggaacagca gcagcgaggc cttggcggca ccgggcacga ccgcggtcgc cacagcgtac
     1621 gcgagcaggg tggcaccggc gccggcggcg aagccatgca gcatcgacag ccacaccggc
     1681 ggattgcgct ggccgacgaa gcggatgccc gccatggtga gtccgccgag ggcggcgagc
     1741 acgaacagcc aggcggccgt gcgcagcatc agcatcgcgt ccatggcggg ctcgctcggt
     1801 ggggtccggc cgacgctagg actgcgccgg tgagcaggac gtcaagcggc ggtgcgccga
     1861 gttcgccgcc gccggacgcg gcccgcgacc atcaggcggc ggcctgcgcc tgttccgcgg
     1921 tgaccgcgac cgcgtgcagc accgacgcga tcttcagcgc gctctgcacg ccctgcgcgg
     1981 tcacgccgtg ctcgcgcacg gtgcgctcgt gcgagtcgag gcaggcgccg cagccgttga
     2041 tcgccgacac cgcgaggcag cacagctcga agcccgcctt gtccaggccg ggccgcgcga
     2101 ggatgttcat gcgcaggccg gcgcgcatgg tgccgtactc gtcgttgtgg atcaggtgcg
     2161 tcgcgcggta gtagatgttg ttcatcgcca tgatcgcggc ggcggcgcgc gccccgtcca
     2221 tctcctcggc cgacagctgt tcggcggcga acggcttgat cgcctcgacc agcggcgcat
     2281 ggcgggcggc gat
//
LOCUS       DATIQC010000029         2180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_425390, whole genome shotgun sequence.
ACCESSION   DATIQC010000029 DATIQC010000000
VERSION     DATIQC010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425390"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1088
                     /gene="ispG"
                     /locus_tag="VLM17_00655"
                     /gene_synonym="gcpE"
     CDS             <1..1088
                     /gene="ispG"
                     /locus_tag="VLM17_00655"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HSR64104.1"
                     /translation="LVRVTVNTPEAAAAVPRIVDRLGMMGVQVPLIGDFHYNGHQLLA
                     KEPACAEALAKYRINPGNVGFGRKKDLQFAQLVEFAIAHGKPVRIGANWGSLDQALAA
                     QLMDENHLREVPLDAAEVLREALIRSALDSAQRAVELGLPAERIILSAKVSGVQELIA
                     VYRAMAARSDFALHLGLTEAGIGSKGVVASSAALAVLLQEGIGDTIRISLTPEPGAPR
                     SNEVVVAQELLQTMGLRAFTPMVTACPGCGRTTSEFFQELAQVVQEHVRAKMPEWKIT
                     HPGAENLTLAVMGCVVNGPGESRHANIGISLPGTGEAPSAPVFVDGEKTVTLRGDSIA
                     GDFVALIDAYVERRFGTAGAASTPHAG"
     gene            1027..1821
                     /locus_tag="VLM17_00660"
     CDS             1027..1821
                     /locus_tag="VLM17_00660"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HSR64105.1"
                     /translation="MPMSNAGSEPQGPRPPHTPAEVARTARQEARFGAAFFRVYGPRL
                     LLAFLGVLLPLWGFGALVAELREGEPFAFDQPVLELLHGQASPALDRFALAASAVGYA
                     WGVMPFDVLFVLALAWRRHFREGLFAGLALLGSALLNLGAKHSFRRVRPALWTSIAPE
                     HSYSFPSGHAMGSMTLALTLLLLCWSARTPWGTPWRWWATVLGGLFVLSVGWARIYLG
                     VHYPSDILAGWCAAAVWTAGAYGLVFRGTLKPWTKSPPRPVPEPSA"
     gene            complement(1822..>2180)
                     /locus_tag="VLM17_00665"
     CDS             complement(1822..>2180)
                     /locus_tag="VLM17_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008921974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64106.1"
                     /translation="TEMFYWVTIMFSQTLGTALGDWTADTAGLGYTGAALVFGALLAL
                     VAAAYFWTRISHTALFWAAFVLTRPLGAVLGDFLDKPVARGGLALSRYDASLALLVAM
                     AILVVVLPHRAARSAH"
BASE COUNT          301 a          779 c          776 g          324 t
ORIGIN      
        1 aactcgtgcg cgtcaccgtc aacaccccgg aggccgccgc cgccgtgccg cgcatcgtcg
       61 accgcctcgg gatgatgggc gtgcaggtgc cgctgatcgg cgacttccac tacaacggcc
      121 accagctgct ggcgaaggag ccggcctgcg ccgaggcact ggccaagtac cggatcaacc
      181 ccggcaacgt cggcttcggc aggaagaagg acctgcagtt cgcgcagctg gtcgagttcg
      241 cgatcgcgca cggcaagccg gtccgcatcg gcgccaactg gggatcgctc gaccaggcgc
      301 tcgccgccca gctgatggac gagaaccacc tgcgcgaggt accgctcgac gccgccgaag
      361 tgctgcgcga ggcgctgatc cgctcggcgc tggattccgc gcagcgcgcc gtcgagctcg
      421 ggctgccggc cgagcgcatc atcctcagcg ccaaggtcag cggcgtgcag gaactgatcg
      481 cggtctatcg cgcgatggcc gcgcgctcgg acttcgccct gcacctgggc ctgaccgagg
      541 ccgggatcgg cagcaagggc gtcgtcgcct ccagcgccgc gctcgccgtg ctgctgcagg
      601 aaggcatcgg cgacaccatc cgcatctcgc tgacgcccga gcccggcgcg ccgcgcagca
      661 acgaggtcgt ggtcgcgcag gagctgctgc agacgatggg gctgcgcgcg ttcacgccga
      721 tggtcaccgc ctgcccgggt tgcggccgca cgacgtcgga gttcttccag gaactggcgc
      781 aggtggtgca ggagcacgtg cgcgcgaaga tgccggagtg gaagatcacc catcccggcg
      841 cggagaacct gacgctggcg gtgatgggct gcgtggtcaa cggtcccggt gaatcgcgcc
      901 acgccaacat cggcatctcg ctgccgggca ccggcgaggc gccgtcggcg ccggtcttcg
      961 tcgacggtga aaagaccgtc accctgcgcg gcgatagcat cgccggcgac ttcgtcgcgt
     1021 tgatcgatgc ctatgtcgaa cgccggttcg gaaccgcagg ggccgcgtcc accccacacg
     1081 ccggctgagg tcgcgcgcac cgcgcggcag gaagcgcgct tcggtgccgc tttcttccgc
     1141 gtctacgggc cgcgcctgct gctggccttc ctcggcgtgc tgcttccgct gtgggggttc
     1201 ggcgcgctcg tcgcggaact gcgcgaaggc gagccgttcg cgttcgacca gcccgtcctg
     1261 gaactgctcc acgggcaggc gtcgcccgcg ctcgaccggt tcgcgctcgc cgcgtccgcg
     1321 gtcggctatg cctggggcgt gatgccgttc gacgtgctgt tcgtgctcgc gctcgcctgg
     1381 cgccggcatt tccgcgaagg actgttcgcc gggctcgcgc tgctcggttc ggcgctgctc
     1441 aacctcgggg ccaagcactc gttccggcgg gtgcgcccgg cgctgtggac gtcgatcgcg
     1501 ccggagcaca gctacagctt ccccagcggg cacgccatgg gctcgatgac gctggcgctc
     1561 acgttgctgc tgctgtgctg gagcgcacgc acgccctggg gcacgccgtg gcgctggtgg
     1621 gcgacggtgc tgggcgggct gttcgtgctg tcggtgggct gggcgcgcat ctacctcggc
     1681 gtgcattacc cctccgacat cctcgccggc tggtgcgcgg ccgcggtgtg gaccgccggc
     1741 gcctacggac tggtgttccg cgggacgctc aagccgtgga cgaagtcgcc gcccaggccg
     1801 gtgcccgaac cgtccgcctg atcagtgcgc gctgcgcgcc gcgcggtgcg gcagcaccac
     1861 cacgaggatg gccattgcca ccagcagcgc cagcgaggcg tcgtagcggc tgagcgcgag
     1921 accgcccctg gcgacgggtt tgtccaggaa atcgcccagc accgcgccca gcgggcgggt
     1981 cagcacgaag gccgcccaga acagcgcggt gtgcgagatg cgcgtccaga aatacgctgc
     2041 cgccacgagc gccagcagcg cgccgaacac cagcgcggcg ccggtgtagc cgagcccggc
     2101 cgtgtccgcg gtccagtcgc cgagcgcggt gcccagcgtc tgcgagaaca tgatcgtcac
     2161 ccagtagaac atctccgttc
//
LOCUS       DATIQC010000030         2257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_248803, whole genome shotgun sequence.
ACCESSION   DATIQC010000030 DATIQC010000000
VERSION     DATIQC010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_248803"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..470)
                     /locus_tag="VLM17_00670"
     CDS             complement(<1..470)
                     /locus_tag="VLM17_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HSR64107.1"
                     /translation="MSPCQPATVAVRAGIDRDTAFGAVTPPLVLSSNFSFEGFNARRR
                     YDYTRSGNPTRDLLAEALAELEGGAGGVVTATGMAAITLVLHACLRPGDTLVVPHDAY
                     GGSWRLFNALANKGAFELVTADLTDPRALTPALAPGPALVWIETPSNPLLRITD"
     gene            complement(467..1420)
                     /locus_tag="VLM17_00675"
                     /pseudo
     CDS             complement(467..1420)
                     /locus_tag="VLM17_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481467.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
     regulatory      complement(1592..1718)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            1824..>2257
                     /locus_tag="VLM17_00680"
     CDS             1824..>2257
                     /locus_tag="VLM17_00680"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytase"
                     /protein_id="HSR64108.1"
                     /translation="MRLPALSAAALLLAACTLPPPRPTSPAPAAAAVPSALAAAWSSA
                     SAPAGAIASWTDEDGGPRVITTTPDGRLAIRDGDTGALLDDPRAATLRFDDPAAIAVF
                     GDHLFVAERGRHRVQVLSLPAFAPVASMGADALVAPAGLWLD"
BASE COUNT          306 a          814 c          838 g          299 t
ORIGIN      
        1 atgtcggtga tgcgcagcag cgggttggat ggtgtctcga tccacaccag cgccggcccg
       61 ggcgcgagcg ccggggtgag cgcgcgcggg tcggtgaggt cggcggtcac cagctcgaac
      121 gcgcccttgt tcgcgagtgc gttgaacagg cgccagctgc cgccgtaggc gtcgtgcggg
      181 acgaccagcg tgtcgccggg ccggaggcag gcgtgcagca cgagggtgat cgccgccatg
      241 ccggtggcgg tgaccacgcc gcccgcgccg ccctcgagtt cggcgagtgc ctcggcgagc
      301 aggtcgcggg tgggattgcc gctgcgggtg tagtcgtagc gccgcctggc gttgaagcct
      361 tcgaagctga agttggagga cagcaccagc ggcggcgtca cggcgccgaa ggcggtgtcg
      421 cgatcgatgc cggcgcgcac ggcgacggtg gcgggctggc aggggctcat gcggcgatct
      481 ccggacaggc gcaggaaacg acgtcggcca gcacgcgagc gatgacgtcg tgttccttga
      541 ggaacgcatc gtggccgtac agcgactgca gcacgtgcag gcgcgcgccc ggcaggcgtt
      601 cgaccagcgc gtacgcatcc gccacgggga ccagccggtc ctgcgcgatc gcgaccacgg
      661 tgaccggcgc ctgcacccgc tccggatcga gcttctgcag gtcgatcgat tcgaacagtc
      721 gcaggaaggc ggtcggcgcg gtgcgcgcga cgtacttcgc accgcagtgc cgcaggtagt
      781 cctcggcgcc gacgcgcacc tggccatcga cgacctgcgc gccggcgaat cgcgcgtcga
      841 attcctccgg cgtgcgatag ccgagcagcg cgagctggcg cgccagcgac agcccgtcga
      901 cctcgtcgca ctgcaacgcg cccagcgcca ccgcctgccg ctgcagcgca cgccacgcgc
      961 tcgcatacgg atgcgcgcgg tgcgtaccgc tgatcgcgca caggcgctgc aggcgtcgcg
     1021 gatggcgcgc ggcgaactgg aggcccacca tcgccccata cgaggcgccg acgaaggcgt
     1081 cgagcgcggc gacgccgagc gcgtcgagca cgcgcgcgat cgcgtcggcc tggtcggccg
     1141 gatcgatcgg cacgtcgagc gcgccgtcgg cgccgagcca gtcgatggcg agcacgcgca
     1201 cccgcgacgg atcgagcgcc ttgccctcgc ccacctgcgc atcccaccag cccggctgcg
     1261 cgaacgtcgc gctcgccgcg acgtggcggt cggcggaaat gccgccggcg acgaacacca
     1321 cgggcgttgc ggcatcgccg agcgcttccc agcggatgcg gaggcgatgc gatccggcat
     1381 ggcgcagggc gagcgtgacg tcgaggtcgc cgcgcaccgc gcaggcgcta tgcgcgagga
     1441 ctggagcgaa cggggaccgg gacacggtgg gtgcgcgcgg caccggggat tggctggggc
     1501 tcatcggcgg catccggttg ggaagggcca cgaggcccgc ggggaaaccg gatgcaacag
     1561 ccacgacgcc acgcgggagg agcgtggcgc gcaaccatct accggcggac gcgcaggtcc
     1621 ccgcaggact tggcaccttc cccatccgcg aacgcgtcgc ggatggcggg gttgccccgg
     1681 cgtcttcggg cctgtccctc agccggtctc gatggatggc cgcagcttgc cggcgatttc
     1741 gatcgatgtc aatcgcttca tccgcatcga gcgatggatg tttgcgagcg gcgtcttcac
     1801 acgtcgttgc cgagactgcg ccgatgcgcc tgcccgccct gtccgcggcc gccctgctgc
     1861 tggccgcctg caccctcccg cctccgcgtc cgacgtcgcc cgcacccgcc gcggccgccg
     1921 taccatccgc gctcgccgcg gcgtggtcgt ccgcgtcggc tcccgccggc gccatcgcca
     1981 gttggaccga cgaggatggc ggcccccgcg tgatcacgac cacgcccgac ggccggctgg
     2041 cgatccgcga cggcgatacc ggtgcgctgc tcgacgaccc gcgcgccgcc acgctgcgct
     2101 tcgacgatcc ggccgccatc gcggtgttcg gcgaccatct gttcgtcgcc gagcgcgggc
     2161 gccatcgcgt gcaggtgctg tcgctgccgg cgttcgcccc cgtggcgagc atgggtgccg
     2221 acgcgctcgt cgcgcccgcg ggcctgtggc tcgacga
//
LOCUS       DATIQC010000031         1734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_637514, whole genome shotgun sequence.
ACCESSION   DATIQC010000031 DATIQC010000000
VERSION     DATIQC010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_637514"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..830)
                     /locus_tag="VLM17_00685"
     CDS             complement(<1..830)
                     /locus_tag="VLM17_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HSR64109.1"
                     /translation="MTRWKDNLANGVPRLAVGVHDMAMVWLTWVGLHQLRFAVAPSVP
                     PLPLFSPEIGLVLLAQGAVFWHVGLYRGIWRFASVPDLLNILKASVFGLMGIAAALFL
                     YNRLDQVPRSVLVLYPLALTALLGMPRLLYRSWKDFHNARRAKAGLRVLILGAGSAGE
                     ALVRDLRRVGTYVPVGFLDDAGKLRGSVLHGLPVLGRIEDVERVAPETAANLLVIAMP
                     SLDAPAMRRIVAACERTSLPFRTVPRLDDLLEGRSLPGDLKEVAIEDLLGRQPVTPDW
                     "
     gene            complement(827..>1734)
                     /locus_tag="VLM17_00690"
     CDS             complement(827..>1734)
                     /locus_tag="VLM17_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64110.1"
                     /translation="RRLLDHPGERRSHVAATPRGGGVGIVVAMCGALVAGAVIFPAER
                     ALALAIVGGLALVAAVGWIDDHRPLSPWLRLLAHALSAAGLGFGMFATGTGLPFALVG
                     AAAALVLTNVWNFMDGIDAIAASQALLVALACALYAGGGPVAWWALALAAACAGFLPF
                     NLPPARIFLGDVGSGALGFLLAALIAAAGARRPADAPLLLLPLSAFLVDATLTLARRI
                     WRGERWWLPHAQHAYQGLARACHRHGPVTAAYALWTVAGVALMRAGAGAGPAVKMLAL
                     SGACLGGAIAWKWSQRTPSPQEAKE"
BASE COUNT          288 a          645 c          625 g          176 t
ORIGIN      
        1 ttccagtcgg gcgtcacggg ctggcggccg agcaggtcct cgatcgccac ctccttgagg
       61 tcgccgggca gcgagcggcc ctcgagcagg tcgtccagcc gcggcaccgt gcggaacggc
      121 aggctggtgc gctcgcaggc ggcgacgatg cggcgcatcg ccggcgcatc cagcgacggc
      181 atcgcgatca ccagcaggtt ggccgccgtc tccggcgcga cccgctcgac gtcctcgatc
      241 cgcccgagca ccggcaggcc atgcagcacg ctgccgcgca gcttgcccgc gtcgtcgagg
      301 aagccgaccg ggacataggt gcccacccgc cgcaggtcgc gcaccaatgc ctcgcccgcg
      361 ctgcccgcgc cgaggatgag cacgcgcaga ccggccttgg cccggcgcgc gttgtggaag
      421 tccttccacg accggtaaag caggcgcggc atgccgagga gtgcggtgag cgccagcgga
      481 tacagcacca gcaccgaacg cggcacctgg tccagccggt tgtagaggaa cagcgcggcg
      541 gcgatgccca tcaggccgaa gacgctggcc ttgaggatgt tgagcaggtc gggaacgctg
      601 gcgaagcgcc agatgccgcg atacaggccg acgtgccaga acaccgcgcc ctgggcgagc
      661 aggaccaggc cgatctcggg cgagaacagc ggcagcggcg gcaccgacgg ggcgaccgcg
      721 aaacgcagct ggtgcaggcc gacccaggtc agccagacca tggccatgtc gtggacaccg
      781 acggccagcc gcgggactcc gttggcgaga ttgtctttcc agcgagtcat tccttagcct
      841 cctgggggga cggagtccgc tgcgaccact tccatgcgat cgcgccgccc aggcaagcgc
      901 cggacagcgc cagcatctta accgctggac cggcgccggc gcccgcccgc atgagcgcga
      961 cgcccgcaac ggtccagagt gcatacgccg ccgtcaccgg tccatggcgg tggcacgccc
     1021 gggccaggcc ctggtaggca tgctgggcat gcggcaacca ccagcgctcg ccgcgccaga
     1081 tgcgccttgc gagcgtgagc gtggcgtcaa cgaggaaggc ggacagcggc aacagcagca
     1141 ggggcgcgtc ggcgggcctg cgcgcgcccg ccgccgcgat gagcgccgcc agcaggaagc
     1201 ccagcgcccc gctgcccacg tcgccgagga agatgcgtgc cggcggcagg ttgaagggca
     1261 ggaaacccgc gcacgccgcc gccagcgcca gcgcccacca ggcgaccggc ccgccgccgg
     1321 cgtacagcgc gcaggccagc gccacgagca gcgcctggct ggccgcgatg gcatcgatgc
     1381 catccatgaa gttccacacg ttggtcagca ccagcgccgc cgccgcgccg accagggcga
     1441 acggcaggcc ggtgccggtg gcgaacatgc cgaagcccag gccggccgcg gacagcgcgt
     1501 gcgccagcag ccgcaaccat ggcgacaggg ggcggtggtc gtcgatccac ccgaccgcgg
     1561 cgaccagcgc cagcccgccg acgatcgcca gcgcgagcgc gcgctcggcg ggaaagatca
     1621 ccgcccccgc caccagcgcg ccgcacatcg ccacgacgat gccgacgccg ccgccgcgcg
     1681 gtgtcgcggc gacatggctg cgacgctcgc cggggtggtc gagcaggcgg cgtc
//
LOCUS       DATIQC010000032         2753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_284258, whole genome shotgun sequence.
ACCESSION   DATIQC010000032 DATIQC010000000
VERSION     DATIQC010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2753
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284258"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..922)
                     /locus_tag="VLM17_00695"
     CDS             complement(<1..922)
                     /locus_tag="VLM17_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR64111.1"
                     /translation="MSADAAGLLPAAPPHAPMDPGVATLTAEEFALFAQVGRVRAVEP
                     GERLFRRGDLGTTMYVVSQGEVDLDFGEDLAAKRLGPYEFFGELGLLIGDHARSADAT
                     AVGHGLLLELRKDEFEPIAERAPALLAHFLRRAIQRVVLNEQTLIGRLRRRNVELQHA
                     LDSLRATTRRLSQTEKLTRTDELTGLANRRGFQLHLAERRRNGALAHRGLLLIDCDHF
                     KDINDTHGHLVGDRVLQGVANILRSAAGPDDFPARIGGDEFCMLVNADAPADLLRIAN
                     FVVGTAHALDELKTAPPQIATLSIGATLITP"
     gene            complement(988..1434)
                     /locus_tag="VLM17_00700"
     CDS             complement(988..1434)
                     /locus_tag="VLM17_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64112.1"
                     /translation="MRHRLSTLLFLALVVATPAFANDDGVPATAGEIVQSQQALRAQL
                     GQRNGQYANLDPATTDKIRVAQDQVFQLLTGVGSLDQLDDAHRSELTRLLGDIKALLA
                     TQPAPGMLCRRERQIGSNMIKQRCYKADDQAAQQARQQMMDLGRTH"
     gene            complement(1525..>2753)
                     /gene="aceA"
                     /locus_tag="VLM17_00705"
     CDS             complement(1525..>2753)
                     /gene="aceA"
                     /locus_tag="VLM17_00705"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HSR64113.1"
                     /translation="RDYNAEDVLRLRGSLAIEHTLARRGAERLWSLLHELPYVAALGA
                     LTGNQAVQQVKAGLTAIYLSGWQVAADANGAGEMYPDQSLYPANSVPQVVKRINGTLL
                     RADQLHHAEGDDSIDFLQPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLASV
                     KKCGHMGGKVLVPTREAVEKLVAARLAADVCGVPTLVVARTDAEAADLLTSDVDANDR
                     PFCTGERTVEGFYKTRKGLDQAVSRGLAYAPYADLVWCETGKPDLKFARAFAEAIHAK
                     FPGKLLAYNCSPSFNWKQHLDDATIAKFQHELAAMGYRFQFITLAGFHALNHSMFQLA
                     HGYARRQMSAFVELQQAEFAAAEQGFTAVKHQREVGTGYFDAVTQTIQGAQSSTVALK
                     GSTEEEQFRPAPRVAA"
BASE COUNT          370 a          910 c         1041 g          432 t
ORIGIN      
        1 gcggggtgat cagggtggcg ccgatgctga gcgtggcgat ctgcggcggc gcggtcttga
       61 gctcgtcgag cgcgtgcgcg gtgccgacga cgaagttggc gatgcgcagc aggtcggccg
      121 gcgcatcggc gttcaccagc atgcagaact cgtcgccgcc gatgcgcgcg ggaaagtcgt
      181 ccggcccggc ggccgagcgc aggatgttgg ccacgccctg cagcacgcgg tcgccgacca
      241 gatggccgtg ggtgtcgttg atgtccttga aatggtcgca gtcgatcagc agcaggccgc
      301 ggtgggcgag cgcgccgttg cggcggcgct cggccaggtg cagctggaag ccgcgccggt
      361 tggccaggcc ggtgagttcg tcggtgcggg tgagcttttc ggtctgcgag aggcggcggg
      421 tggtggcgcg caggctgtcg agcgcgtgct gcaactcgac gttgcgccgg cgcaggcggc
      481 cgatcagtgt ctgctcgttg agcacgacgc gctggatcgc gcggcgcagg aagtgcgcga
      541 gcagcgcggg cgcgcgctcg gcgatcggct cgaactcgtc cttgcggagc tccagcagca
      601 ggccatggcc gacggcggtg gcgtcggcgc tgcgcgcgtg gtcgccgatc agcaggccga
      661 gctcgccgaa gaactcgtag ggcccgaggc gcttggcggc caggtcctcg ccgaagtcga
      721 ggtcgacctc gccctgcgag accacgtaca tggtggtgcc gaggtcgccg cggcggaaca
      781 gccgttcgcc cggttcgacc gcgcgcacgc ggccgacctg ggcgaacagc gcgaattcct
      841 cggcggtcag cgtggcgacg cccgggtcca tcggggcgtg cggcggcgcg gccggcagca
      901 ggcccgcggc atcggcgctc atcttcggat ccaacagccc tgtcggcggc gaggatagca
      961 ccgccccgcc gcccgggccg cgacgcctca gtgcgtgcgg ccgaggtcca tcatctgctg
     1021 ccgtgcctgc tgcgccgcct ggtcgtcggc cttgtagcag cgctgcttga tcatgttcga
     1081 gccgatctgg cgttcccgcc ggcacagcat gcccggggcc ggctgggtgg cgagcagcgc
     1141 cttgatgtcg ccgagcaggc gcgtgagttc ggaacggtgc gcgtcgtcga gctggtcgag
     1201 ggagccgacc ccggtcagca gctggaacac ctggtcctgg gcgacccgga tcttgtccgt
     1261 ggtggccgga tcgaggttgg cgtactggcc gttgcgctgg ccgagctggg cgcgcaacgc
     1321 ctgctgcgac tgcacgatct cgcccgccgt ggccgggacg ccgtcgtcgt tggcgaaggc
     1381 cggggtggcg accacgagtg cgaggaacag cagcgtggaa agacggtgac gcatcgggac
     1441 gttctcgagg tggggtggag gcggcaggtc agcacaggcc tccccccgtg tccataggcc
     1501 gaaaggccat tcccgccgtg ccattcaggc cgcgacgcgc ggcgccggcc ggaactgctc
     1561 ctcctcggtc gagcccttga gggcgacggt ggacgactgc gcgccctgga tggtctgggt
     1621 gacggcatcg aaatagccgg tcccgacttc gcgctggtgc ttgaccgcgg tgaagccctg
     1681 ctccgcggcg gcgaattcgg cctgctgcag ctcgacgaag gcgctcatct gccggcgcgc
     1741 gtagccatgc gcgagctgga acatcgagtg gttgagcgcg tggaagccgg ccagggtgat
     1801 gaactggaac cggtagccca ttgcggcgag ttcgtgctgg aacttcgcga tcgtcgcgtc
     1861 gtcgaggtgc tgcttccagt tgaacgacgg cgaacagttg taggcgagca gcttgccggg
     1921 gaacttcgca tggatcgcct cggcgaaggc gcgcgcgaac ttcaggtcgg gcttgccggt
     1981 ctcgcaccag acgaggtcgg cgtacggggc gtaggccagg ccgcgcgaga ccgcctggtc
     2041 gaggcccttg cgggtcttgt agaagccttc gacggtgcgt tcgccggtgc agaacgggcg
     2101 atcgttggcg tcgacgtcgc tggtgagcag gtcggcggcc tcggcgtcgg tgcgcgcgac
     2161 gaccagcgtc ggcacgccgc acacgtccgc ggcgaggcgc gccgcgacca gcttctcgac
     2221 cgcctcgcgg gtgggcacca gcaccttgcc gcccatgtgc ccgcacttct tcaccgacgc
     2281 gagctggtcc tcgaagtgca cgccggccgc gcccgcctcg atcatcgcct tcatcagttc
     2341 gaacgcgttg agcacgccgc cgaagccggc ctcggcgtcg gcgacgatcg gctgcaggaa
     2401 gtcgatgctg tcgtcgccct cggcgtggtg cagctggtcg gcgcgcagca gcgtgccgtt
     2461 gatgcgcttg accacctgcg gcaccgagtt ggccggatac agcgactggt ccggatacat
     2521 ctcgccggca ccgttggcat ccgcggcgac ctgccagccg ctgaggtaga tcgccgtcag
     2581 gcccgccttc acctgctgca ccgcctggtt gccggtcagc gcgccgagcg cggcgacgta
     2641 cggcagctcg tgcagcagcg accacagccg ctccgcgcca cggcgcgcga gcgtgtgctc
     2701 gatcgcgagc gagccgcgca gcctgagcac gtcttccgcg ttgtagtcgc gct
//
LOCUS       DATIQC010000033         2350 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_1717, whole genome shotgun sequence.
ACCESSION   DATIQC010000033 DATIQC010000000
VERSION     DATIQC010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1717"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1039
                     /locus_tag="VLM17_00710"
     CDS             <1..1039
                     /locus_tag="VLM17_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HSR64114.1"
                     /translation="GAGGSIGAELCRQCARHGAARIALVEIDELALTTIEAELIRHFP
                     QVHCIPVLGDCGDPAVIRRALELGAPDAVFHAAAYKQVPLLQAQLREAVRNNVLATET
                     VARASQQAGAGTFVLISTDKAVDPVNVLGATKRLAEMVCQALADPHATRSVAVRFGNV
                     LDSAGSVVPLFREQIRHGGPVTVTDTDVTRYFMTIPEACQLILQAAALGAQQVVYTLD
                     MGEPVSIRMLAEQMIRLAGKVPERDVAIVYTGLRAGEKLHENLFHADERYRPTAHPKI
                     LQAEARAIAPEQVLAASERLRDAMVRYDLEELGQLLRETVPEFAPCDETQPPATATVV
                     AFPARQSRKIR"
     gene            1036..1956
                     /gene="galU"
                     /locus_tag="VLM17_00715"
     CDS             1036..1956
                     /gene="galU"
                     /locus_tag="VLM17_00715"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003474698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HSR64115.1"
                     /translation="MTQSTAGHPRIRKAVFPVAGLGTRFLPATKTVPKEMLPVIDRPL
                     IQYAVDEAIEAGCDTLVFVTNRYKHAVADYFDKAYELEQKLERSGKTEQLELVRSVLP
                     DGVRAVFVTQAEALGLGHAVLCAKPVIGDEPFAVLLPDDLIWNRGGAGALKQMADLAE
                     QSGASVLATQNVAREKTGSYGIVATEDFAGRQGRITAIVEKPQPAVAPSTLAVVGRYV
                     LSPRIFDLLETTTPGAGGEIQLTDAISALLSEEPVLAYRFKGTRFDCGTHIGLVEATI
                     RYALDHEALSDAARDMMQKALSELGVIELG"
     gene            complement(2002..>2350)
                     /locus_tag="VLM17_00720"
     CDS             complement(2002..>2350)
                     /locus_tag="VLM17_00720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64116.1"
                     /translation="GLLLLDGWLRRVNAQLAASDPDTVRHWLRGLLAGLGAALAVPAA
                     LLGLGLRRLGFRTRVEGRFPPRGWQTLRDVRVLHDAIALRWARRTETLGSAALALAAL
                     LVLWAGWAWWRFG"
BASE COUNT          370 a          866 c          809 g          305 t
ORIGIN      
        1 cggcgcgggc ggttcgatcg gcgccgagct gtgccgccag tgcgcgcgcc acggcgccgc
       61 ccgcatcgcg ctggtggaga tcgacgaact cgcgctgacc accatcgagg ccgagctcat
      121 ccggcatttc ccgcaggtgc actgcatccc ggtgctcggc gactgcggcg atccggcggt
      181 gatccgccgc gcgctcgaac tcggcgcccc cgacgcggtg ttccacgccg ccgcctacaa
      241 gcaggtgccg ctgctgcagg cgcaactgcg ggaagcggtg cgcaacaacg tactggcgac
      301 cgagaccgtc gcgcgcgcca gccagcaggc gggcgcgggc accttcgtgc tgatctccac
      361 cgacaaggcg gtcgatccgg tcaacgtgct cggcgccacc aagcgcctgg ccgaaatggt
      421 ctgccaggcg ctggccgatc cgcacgcgac gcgctcggtg gcggtgcggt tcggcaacgt
      481 gctcgattcg gccggcagcg tggtcccgct gttccgcgag cagatccgcc acggcggccc
      541 ggtgacggtg accgacacgg acgtcacccg ctacttcatg accatccccg aggcctgcca
      601 gctgatcctg caggccgccg cgctcggtgc gcagcaggtc gtctacacgc tggacatggg
      661 cgagccggtg tccatccgca tgctggccga gcagatgatc cgcctcgccg gcaaggtgcc
      721 ggaacgcgac gtcgccatcg tctacaccgg cctgcgcgcg ggcgagaaac tgcacgagaa
      781 cctcttccac gccgacgagc gctatcggcc caccgcgcac cccaagatcc tgcaggccga
      841 ggcgcgcgcg atcgccccgg agcaggtgct ggccgcgagt gaacgcctgc gtgacgcgat
      901 ggtccgttac gatctggagg agctgggcca gctgctgcgc gaaacggttc ccgaattcgc
      961 gccctgcgac gagacgcagc ccccggcgac ggcgaccgtg gtcgcctttc ccgctcgcca
     1021 gtcacggaag attcgatgac gcaatccact gcaggccacc cccgcatccg caaggccgtc
     1081 ttcccggtcg ccggcctggg gacgcgcttc ctccccgcca cgaagaccgt gccgaaggaa
     1141 atgctgccgg tgatcgaccg gccgctgatc cagtacgcgg tcgacgaggc gatcgaggcg
     1201 ggctgcgaca cgctggtgtt cgtcaccaac cgctacaagc acgcggtcgc cgattacttc
     1261 gacaaggcct acgaactcga gcagaagctc gagcgcagcg gcaagaccga acagctcgaa
     1321 ctggtgcgca gcgtgctgcc cgacggcgtg cgcgcggtgt tcgtgaccca ggccgaggcg
     1381 ctgggactgg gccacgccgt gctgtgcgcc aagccggtga tcggcgacga gccgttcgcg
     1441 gtgctgctgc cggacgacct gatctggaac cgcggcggcg cgggcgcgct gaaacagatg
     1501 gccgacctcg ccgaacagag cggcgcgagc gtgctggcca cgcagaacgt cgcgcgcgag
     1561 aagaccggca gctacggcat cgtcgccacc gaggatttcg ccggccgcca ggggcgcatc
     1621 accgcgatcg tcgagaagcc gcagccggcg gtggcgccga gcaccctggc ggtggtcggc
     1681 cgctacgtgc tgtcgccgcg catcttcgac ctgctggaaa cgaccacgcc gggcgccggc
     1741 ggcgaaatcc agctgaccga cgcgatctcc gcattgctgt cggaggagcc ggtcctggcc
     1801 tatcgcttca agggcacgcg cttcgactgc ggtacccaca tcggcctggt cgaggccacc
     1861 atccgctacg cgctcgacca cgaggcgctc agcgacgccg cccgcgacat gatgcagaag
     1921 gcgttgtccg aactgggcgt gatcgaactg ggctgatccg ctgggctgat ccgcgcaggg
     1981 cggggattcg cggtcgtccc ctcagccgaa gcgccaccac gcccacccgg cccacagcac
     2041 cagcagggcc gccagcgcca gcgcggcgct gccgagggtt tcggtgcgtc gcgcccagcg
     2101 cagcgcgatc gcgtcgtgca gcacgcggac gtcccgcagg gtctgccagc cgcgcggggg
     2161 gaagcgcccc tcgacccgcg tcctgaagcc gagcctgcgc agtcccagtc caagcagcgc
     2221 cgccggcacc gccagcgccg cgcccaggcc ggccagcagg ccgcgcagcc agtgccggac
     2281 ggtgtccgga tcgctggccg ccagttgcgc gttgacccgg cgcagccagc cgtcgagcag
     2341 gagcaacccc
//
LOCUS       DATIQC010000034         2664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_107648, whole genome shotgun sequence.
ACCESSION   DATIQC010000034 DATIQC010000000
VERSION     DATIQC010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107648"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..690
                     /locus_tag="VLM17_00725"
     CDS             <1..690
                     /locus_tag="VLM17_00725"
                     /inference="COORDINATES: protein motif:HMM:NF044456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5110 domain-containing protein"
                     /protein_id="HSR64117.1"
                     /translation="GPEHEARRRAAIEERYRLLPYLYTVAEDNARTGAPIMRPVFFEF
                     PQATAFYGDDRDFLLGPDLLVAPAVDERLDPRTLALPPGAWYDARGGVLHGNGGTVAL
                     AADPQATPLFVRAGAIVPMQPLVQSTAQRPAGALELHVWLPPDAATPCRGTLYQDDGE
                     SLAYRRGSFLRLDYHCGVTRDGVDVHARVLHGGYAPWWTQTRIVVHGREVAPVVVDGV
                     GPWDVRLRFMH"
     gene            complement(801..>2664)
                     /gene="dnaE"
                     /locus_tag="VLM17_00730"
     CDS             complement(801..>2664)
                     /gene="dnaE"
                     /locus_tag="VLM17_00730"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HSR64118.1"
                     /translation="PGRTGALLGSSGVGKSTLVNALIGEERFKTRDVRAHDSRGRHTT
                     RHRNLILLPERRGLLVDTPGMRELQLWVQNEGGRETFEDIIALAALFRPGPLGSGMDR
                     DWVDRKHGNTEVSYPHPLLEPVLAPTYGVIVYQEQVMQIAQVLAGYSLGGADLLRRAM
                     GKKKPEEMAKERAKFEAGAKERGVDPTVASSIFDLMEKFAEYGFNKSHSAAYALVAYQ
                     TAWLKVHYPAEFMAAVLSSDMDNTDKVVGFLDEARALQLTVLPPDVNASAYMFEAVAA
                     DTIRYGIGAVKGVGRGVCDAIVEARADGPYADLLDFCKRVDSSRLNKRALEALVQAGA
                     LDALGRNRASLMLQLPEVLKATEQLSREREAGQVSLFGASFGGHEAATPALKLDLPQA
                     DEWPLLQKLQGERETLGHYLSGHPLDPYREDLRALVGHELGDLDRLWSERPDEERRGW
                     RPEMTVVIAGQVTGMRKRGDSQAFVQIEDGRGRIECAFFAEAYYEYAPLLTRDRILVI
                     EGGLREDEFSGGFSLRARRCWDFNQVCSQHAQRMSVRVDLREGDALAQFTRVLQAHAG
                     PTPLLVEAITETALGRLNLNGSRGLRVDATLPGLLRSLPGVRAVRLAIARPWAN"
BASE COUNT          362 a          961 c          940 g          401 t
ORIGIN      
        1 ggccccgaac acgaggcaag gcgccgcgcg gcgatcgagg agcgctaccg gctgctgccg
       61 tacctgtaca ccgtcgccga ggacaacgcg cgcaccggcg cgccgatcat gcgtccggtg
      121 ttcttcgagt tcccgcaggc gacggcgttc tacggcgacg accgcgactt cctgctcggc
      181 ccggacctgc tggtcgcgcc agcggtcgac gaacgcctcg acccgcgcac gctcgcgctg
      241 ccgccgggcg cgtggtacga cgcgcgcggc ggcgtgctgc acgggaacgg cggtaccgtc
      301 gcgctcgcgg cagacccgca ggcgacgccg ctgttcgtgc gggccggggc gatcgtgccg
      361 atgcagccgc tggtgcagtc caccgcgcag cggccggcgg gggcgctgga gctgcacgtg
      421 tggttgccgc ccgacgccgc gacgccctgt cgcggcacgc tgtaccagga cgacggcgaa
      481 tcgctggcct accggcgcgg cagcttcctg cgcctcgatt accactgtgg cgtgacgcgc
      541 gatggtgtcg acgtccacgc ccgcgtgctg catggcggct acgcgccctg gtggacgcag
      601 acacgcatcg tcgtgcacgg ccgcgaggtc gcgccggtgg tggtcgacgg ggtcgggccg
      661 tgggacgtgc ggttgcgctt catgcactag tcgggtgccg tacccgcatt gatccgggtg
      721 cggcctgcgg cagcatccgg gtcatggcgt agcccgggca agcgaagcgc accgggcctg
      781 cggcctggtc cgggctgcgc tcagttcgcc cagggcctgg cgatcgccag gcgcaccgcg
      841 cgcacgccgg gcaggctgcg cagcaggccg ggcagggtgg cgtcgacgcg caggccgcgg
      901 ctgccgttga ggttcaaccg cccgagcgcc gtttcggtga tcgcttccac cagcagcggc
      961 gtcggcccgg catgcgcctg caggacgcgg gtgaactggg cgagcgcgtc gccttcgcgc
     1021 aggtccacgc gcacgctcat gcgttgcgca tgctggctgc agacctggtt gaagtcccag
     1081 cagcggcgcg cgcgcagcga gaagccgccg ctgaactcgt cctcgcgcag gccgccttcg
     1141 atcaccagga tgcggtcgcg cgtgagcagc ggtgcgtatt cgtaataggc ctcggcgaag
     1201 aacgcgcact cgatgcgccc gcgtccgtcc tcgatctgca cgaacgcctg cgaatcgccg
     1261 cgcttgcgca tgccggtgac ctgcccggcg atcaccacgg tcatctccgg ccgccagccg
     1321 cggcgctcct cgtccgggcg ctcgctccac aggcggtcga ggtcgccgag ctcgtgcccg
     1381 accagcgcgc gcaggtcctc gcgatacgga tcgagcgggt gcccgctgag gtagtggccg
     1441 agcgtctcgc gctcgccctg cagcttctgc agcagcggcc actcgtcggc ctgcggcagg
     1501 tcgagcttga gcgccggtgt cgccgcttca tgcccaccga aggacgcgcc gaacagcgag
     1561 acctgtccgg cctcacgctc gcgcgagagc tgctcggtcg ccttgagcac ctccggcagc
     1621 tgcagcatca gggacgcgcg gttcctgccg agcgcatcga gcgcgccggc ctggaccagc
     1681 gcttccagcg cgcgcttgtt gagcctgctc gaatccacgc gcttgcagaa gtcgagcagg
     1741 tcggcgtacg ggccgtccgc gcgcgcctcg acgatggcat cgcacacgcc gcggccgacg
     1801 cccttcaccg cgccgatgcc gtagcggatg gtgtccgcgg ccacggcctc gaacatgtac
     1861 gccgacgcgt tgacgtccgg cggcagcacg gtcagctgca gggcgcgcgc ctcgtcgagg
     1921 aagcccacca ccttgtcggt gttgtccatg tcggaggaca gcaccgccgc catgaactcg
     1981 gcggggtagt gcaccttcag ccacgcggtc tggtaggcga ccagcgcgta ggcggccgag
     2041 tgcgacttgt tgaagccgta ctcggcgaac ttctccatca ggtcgaagat cgacgaggcg
     2101 accgtgggat cgacgccgcg ttccttcgcg ccggcctcga acttggcgcg ctccttcgcc
     2161 atctcctcgg gcttcttctt gcccatcgcg cggcgcagca ggtcggcgcc gccgagcgag
     2221 tagcccgcca gcacctgcgc gatctgcatc acctgctcct ggtacacgat cacgccgtag
     2281 gtcggcgcga gcaccggttc cagcagcgga tgcggatacg agacttcggt gttgccgtgc
     2341 ttgcggtcga cccagtcgcg gtccatcccc gagcccaggg gaccgggacg gaacagcgcg
     2401 gccagcgcga tgatgtcctc gaaggtctcg cggccaccct cgttctgcac ccagagctgc
     2461 agttcgcgca tccctggcgt gtcgacgagc aggccgcggc gttcgggcag cagaatcagg
     2521 ttgcgatggc gcgtggtgtg gcggccgcgc gaatcgtgcg cgcgcacgtc gcgcgtcttg
     2581 aagcgctcct cgccgatcaa cgcgttcacc agggtcgact tccccactcc cgacgatccc
     2641 aacagcgcgc cggtccgacc ggga
//
LOCUS       DATIQC010000035         3008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_567046, whole genome shotgun sequence.
ACCESSION   DATIQC010000035 DATIQC010000000
VERSION     DATIQC010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567046"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VLM17_00735"
     CDS             complement(<1..290)
                     /locus_tag="VLM17_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014503257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR64119.1"
                     /translation="MQTWAIANQKGGVGKTTTSLCLARGLARDGARVLLIDLDPHASL
                     TRAFGIPSDPPPAGSHDLFNSMGHDIAGVVRDTAVANLQLVAAQPALATRERR"
     gene            complement(290..1243)
                     /gene="motD"
                     /locus_tag="VLM17_00740"
     CDS             complement(290..1243)
                     /gene="motD"
                     /locus_tag="VLM17_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotD"
                     /protein_id="HSR64120.1"
                     /translation="MARRGHQHEEHLNHEAWAIPYGDLITLLLAFFVVMYAVSSINEG
                     KYRVMADALSSAFGGTPHSISPIQLGEHQLRGSAFDRPSVVTPGAKASGPTAPSPVSM
                     RAVHQVVDLPTFARGFHKAGEGNGDGQRGEQLRVLGERLQHALSGLVERRLVTVRRAH
                     NYLEVEIQSDVLFDSGIALPDAGARATIAEIADILRTEPNAVRVEGYTDDQPIHTLQF
                     DSNWELSAARAASVVHVMIASGVAPSRLAVVGYGDQQPVADNATAAGRNANRRVLLVI
                     LAAPQSVDAVPDDRVAEAAARDPDVAVASQALGGAKHAGVD"
     gene            complement(1245..1985)
                     /locus_tag="VLM17_00745"
     CDS             complement(1245..1985)
                     /locus_tag="VLM17_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein"
                     /protein_id="HSR64121.1"
                     /translation="MDRLSIIGVTLALAALMGGSVLKGAGLSSLWSPAAFVIVVLGTT
                     ASILVQTPMATFRRALQIVRWVFQPPAQEREAVIRQLVEWSTIARKQGLLALEQQVAA
                     QPDPFLKKGLQMVVDGVEPESIRQMLEIELHGQGQRDLAAAKVFEGMGIYSPTLGIIG
                     AVLGLIAVMKNLADPSKLGHGIAAAFTATIYGIGMANLFLLPMASKLKGVIHGQTAER
                     EMVVEGLIAIAQGENPRNIETRLAGFVH"
     gene            complement(2160..>3008)
                     /locus_tag="VLM17_00750"
     CDS             complement(2160..>3008)
                     /locus_tag="VLM17_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019182910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSR64122.1"
                     /translation="EALADPLVHLVRNAIDHGIEMPAARLAAGKPETGSVRLSAQQEG
                     DHVSIVVRDDGAGIDPEKIRRSAIDKGLIESDAAGRLTPEECLQLIFLPGFSTRTEVS
                     DLSGRGVGMDVVQSKIRELSGQVQIQSEIGRGSCFTIRVPLTLAILPTLLVELEGDVY
                     ALPLVRVVEVLAANPGRALMVDGQPMLDLRQQPMPLVSLRGWLGLDEVPLSAQTCVVL
                     QSGEQRYCLAVDRVRGREEVVIKALPRTLRGLPGYAGASLVGDGRMGLILDVDGLLRT
                     GLAKER"
BASE COUNT          415 a         1066 c         1091 g          436 t
ORIGIN      
        1 cgccgctccc gcgtcgccag cgcgggctgc gcggcgacca gctgcaggtt ggcgaccgcg
       61 gtgtcgcgca ccacgccggc gatgtcgtgg cccatcgaat tgaacaggtc gtggctgccg
      121 gccggcggcg ggtcggacgg gatgccgaac gcacgggtga gcgaagcgtg cgggtcgagg
      181 tcgatcagca gcacgcgcgc gccgtcgcgg gcgagtccgc gcgcgaggca cagcgaggtg
      241 gtggtcttgc cgaccccgcc cttctggttg gcgatggccc aggtctgcat cagtccactc
      301 ctgcgtgctt ggcgccgccc agtgcctgcg aggcaacggc cacgtcggga tcgcgggcgg
      361 cggcctcggc gacgcgatcg tccggcaccg cgtccaccga ttgcggcgcg gccaggatca
      421 ccagcagcac gcgccggttg gcgttgcgcc ccgccgcggt ggcgttgtcg gcgaccggct
      481 gctggtcgcc gtagccgacc accgcaaggc gcgagggcgc gacgccgctg gcgatcatca
      541 cgtgcaccac gctggcggcg cgcgcggcgg acagttccca gttggaatcg aactgcaggg
      601 tgtggatcgg ctggtcgtcg gtgtagccct ccacgcgcac cgcgttgggc tcggtgcgca
      661 ggatgtcggc gatctcggcg atggtcgcgc gcgcgcccgc gtccggcagg gcgatgccgc
      721 tgtcgaacag cacgtcgctc tggatctcga cctcgaggta gttgtgcgcg cggcgcacgg
      781 tgaccagcct gcgctcgacc agccccgaca gcgcgtgctg caggcgctcg ccgagcacgc
      841 gcagctgttc gccgcgctgg ccgtcgccgt tgccttcgcc cgccttgtgg aagccgcgcg
      901 cgaaggtcgg caggtcgacg acctggtgca ccgcgcgcat cgacacgggg ctcggcgcgg
      961 tggggccgct ggccttggcg ccgggggtga cgaccgacgg ccggtcgaag gccgagccgc
     1021 gcaactggtg ctcgccgagc tggatcggcg agatcgaatg cggggtgccg ccgaacgccg
     1081 acgacagcgc gtcggccatg acccggtact tgccctcgtt gatcgaggac accgcgtaca
     1141 tcaccacgaa gaaggcgagc agcagggtga tgaggtcgcc gtaggggatc gcccacgcct
     1201 cgtggttgag gtgctcctcg tgctggtggc cgcgacgcgc catctcagtg cacgaacccg
     1261 gcgaggcggg tctcgatgtt gcgcgggttc tcgccctggg cgatcgcgat caggccctcg
     1321 acgaccattt cccgctcggc ggtctggccg tggatcacgc ccttgagctt gctcgccatc
     1381 ggcagcagga acaggttcgc catgccgatg ccgtagatcg tcgcggtgaa cgcggcggcg
     1441 atgccgtggc cgagcttgct cgggtcggcg aggttcttca tcaccgcgat caggccgagc
     1501 accgcgccga tgatgccgag cgtgggcgaa tagatgccca tgccctcgaa caccttcgcg
     1561 gcggcgaggt cgcgctggcc ctggccgtgc agctcgatct ccagcatctg ccggatcgat
     1621 tccggttcga cgccgtcgac caccatctgc aggcccttct tcaggaacgg atcgggctgc
     1681 gccgcgacct gctgctcgag cgcgagcagg ccctgcttgc gcgcgatcgt gctccactcg
     1741 accagctggc ggatcaccgc ctcgcgctcc tgcgccggcg gctggaacac ccagcgcacg
     1801 atctgcagcg cgcgccggaa ggtcgccatc ggcgtctgca ccaggatcga ggcggtggtg
     1861 ccgagcacga cgatcacgaa cgcggccggc gaccacaggc tcgagagccc cgcgcccttg
     1921 agcacgctgc cgcccatcag ggcggccagc gccagcgtca cgccgatgat gctgagacgg
     1981 tccatgcagg cgttatcggt cgggggaggg ggcgacttga gcgacgggga aggctggctg
     2041 gcatttcagg tgcgtcaccc gggcagggcc gcaggccgca cccgggaagg agggtcgcgg
     2101 tccggtcccg ggtgcgcttc gcctgcccgg gcgaccctga tccgcaggga cgacgatgcc
     2161 tagcgttcct tggccaggcc cgtccgcaac aggccgtcga cgtcgaggat cagtcccatc
     2221 cggccgtcgc cgaccaggct ggcgcccgca tagccgggca acccgcgcag ggtccgcggc
     2281 agcgccttga tcaccacttc ctcgcgcccg cgcacgcggt ccaccgccag gcagtagcgc
     2341 tgctcgcccg actgcagcac cacgcaggtc tgggcggaga gcggcacctc gtccaggccg
     2401 agccagccgc gcaggctgac cagcggcatc ggctgctggc gcaggtcgag catgggctgg
     2461 ccgtcgacca tcagcgcgcg gccggggttg gccgcgagca cctcgaccac gcgcacgagc
     2521 ggcaacgcat agacgtcgcc ctcgagttcg accagcagcg tcggcaggat cgccagcgtc
     2581 agcggcacgc ggatggtgaa gcagctgccg cgcccgatct ccgactggat ctgcacctgc
     2641 ccgctcagtt cgcggatctt cgactgcacc acgtccatgc cgacgccgcg ccccgacagg
     2701 tcgctgacct cggtgcgggt ggagaagccg ggcaggaaga tcagctgcag gcactcctcc
     2761 ggcgtcagcc ggccggcggc gtcggactcg atcaggccct tgtcgatcgc gctgcggcgg
     2821 atcttctcgg ggtcgatgcc ggcgccgtcg tcgcgcacca cgatcgacac gtggtcgcct
     2881 tcctgctgcg cggacaggcg cacgctgccg gtttccggct tgccggcggc caggcgcgcg
     2941 gccggcatct cgatgccgtg gtcgatcgcg ttgcgcacca ggtgcaccag cggatcggcc
     3001 agcgcctc
//
LOCUS       DATIQC010000036         2628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_531768, whole genome shotgun sequence.
ACCESSION   DATIQC010000036 DATIQC010000000
VERSION     DATIQC010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531768"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..547)
                     /locus_tag="VLM17_00755"
     CDS             complement(<1..547)
                     /locus_tag="VLM17_00755"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: protein motif:HMM:TIGR00080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HSR64123.1"
                     /translation="MARSGSDYSRERERMVARQVVARGVHDEDVLEAMRTVPREEFVA
                     GPLREFAYEDAPLPIEAGQTISQPYIVALMLEAAAIEAGDRVLEIGAGSGYAAAVMAQ
                     IAGRVYAIERQPELGRIARERFERLGYDNIVLKVGDGTRGWPEHAPFDAILAAAGGPE
                     VPDVLLDQLAPGGRLVMPVGHS"
     gene            773..2404
                     /locus_tag="VLM17_00760"
     CDS             773..2404
                     /locus_tag="VLM17_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005995434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HSR64124.1"
                     /translation="MHRRDFLKVSGVGLTALMLPFGTRVIAAEALLATMDPARKKAIA
                     DAALTAARAAGATYCDARIGRYLRQFVITREDKVQNVVNTESTGIGIRVLADGSWGFA
                     ATNDLTPDGAAAAAKQAVAIARANARTRTAPVELAPQKGVGEVSWRTPVRKNAMEVPI
                     KDKVDLLLGVNAAATRAGADFVNSMLFLVNEQKYFASSDGSYVDQDIHRIWAPMTATA
                     IDKASGKFKTRDGLSSPMGMGFEYLDGDGSGKYVSPNGIVNYGASYDMVEDAVAAAKQ
                     AREKLKAPSVTPGKYDLVLDPSHLWLTIHESVGHPTELDRVLGYEANFAGTSFVGLDK
                     VRDHFQYGSEHVSIVADKVQPHSLGAVGWDDEGVPAQKWDLIRDGKLVNLQAIRDQAH
                     LLGLDHSQGCCYADSWSSVQFQRMPNVSLQAGAKPLTPAEMIKDVENGIYIIGDGSFS
                     IDQQRYNAQFGGQLFYEIKNGRITRMLEDVTYQMRTPEFWNACAGVCDQRDYRLNGSF
                     FDGKGQPQQVSAVSHGAATARFNGINVISSARSLG"
     gene            2422..>2628
                     /locus_tag="VLM17_00765"
     CDS             2422..>2628
                     /locus_tag="VLM17_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007962710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HSR64125.1"
                     /translation="MSILTEAQAKAILDKVLALSKADECTARLAGSIDGNVRFALNNV
                     STSGVVSDTELAVQVAFGKRTGVAT"
BASE COUNT          436 a          946 c          887 g          359 t
ORIGIN      
        1 ggctgtgccc gaccggcatc accaggcgcc cgccgggcgc gagctggtcc agcagcacgt
       61 ccggcacttc cggaccgccc gcggcggcga ggatcgcatc gaagggcgcg tgttccggcc
      121 agccgcgcgt accgtctccg accttgagca cgatgttgtc gtaacccagt cgctcgaagc
      181 gctcgcgggc gatgcgcccg agttcgggct ggcgttcgat cgcatacacg cggccggcga
      241 tctgcgccat caccgcggcc gcgtagcccg agcccgcgcc gatctccagc acccggtcgc
      301 cggcttcgat cgccgccgcc tcgagcatca gcgcgacgat gtagggctgg gagatcgtct
      361 gccccgcctc gatcggcagc ggcgcgtcct cgtaggcgaa ctcgcgcagc ggcccggcga
      421 cgaattcctc gcgcggcacc gtgcgcatcg cctcgagcac gtcctcgtcg tgcacgccgc
      481 gggccaccac ctgccgcgcg accatgcgtt cgcgttcgcg ggaatagtcg gagccggagc
      541 gcgccatggc tgcggtgccc tgcctgcggc gatgccgcga agctagcgcc gcggcggtga
      601 aggcagggcg acggggaagc gtgccggtgg tcgcgctccg cggcgcgcgt gatcgacagg
      661 gtgccaaagg tcacttgacc cgttttcgcg cgcaccggca gagtcggccg gttcgtccct
      721 gcatgcccgc ctccgcaccg gacgccggcg cgcgccaacc gtggagccac cgatgcacag
      781 acgcgatttc ctcaaggtga gcggcgtggg cctgaccgcc ctgatgctgc ccttcggcac
      841 ccgcgtgatc gccgccgaag ccctgctggc gacgatggac ccggcgcgca agaaggccat
      901 cgccgacgcc gcgctgaccg cggccagggc cgccggcgcc acgtactgcg acgcgcgcat
      961 cggccgctac ctgcgccagt tcgtgatcac ccgcgaggac aaggtgcaga acgtcgtcaa
     1021 caccgagtcc accggcatcg gcatccgcgt gctcgcggac ggttcgtggg gcttcgccgc
     1081 caccaacgac ctcacccccg acggcgcggc agccgccgcg aagcaggcgg tcgcgatcgc
     1141 gcgggcgaac gcacggacgc gcaccgcgcc ggtcgagctc gcgccgcaga agggcgtcgg
     1201 cgaggtgtcc tggcgcacgc cggtccgcaa gaacgcgatg gaagtgccga tcaaggacaa
     1261 ggtcgacctg ctgctcggcg tcaacgccgc ggcgaccagg gccggcgccg acttcgtcaa
     1321 ttcgatgctg ttcctggtca acgagcagaa gtacttcgcc tccagcgacg gctcctacgt
     1381 cgaccaggac atccaccgca tctgggcgcc gatgacggcg accgcgatcg acaaggcgag
     1441 cggcaagttc aagacccgcg atggcctgtc gtcgccgatg ggcatgggct tcgagtacct
     1501 cgacggcgac ggctcgggca agtacgtctc gcccaacggc atcgtcaact acggcgcgtc
     1561 ctacgacatg gtggaggacg cggtcgccgc ggcgaagcag gcgcgcgaga agctcaaggc
     1621 gccgtcggtg acgccgggca agtacgacct cgtgctcgat ccgtcgcacc tgtggctgac
     1681 catccacgag tcggtcggcc acccgaccga gctcgaccgc gtgctcggct acgaggccaa
     1741 cttcgccggc acgagcttcg tcggcctcga caaggtcagg gaccatttcc agtacggcag
     1801 cgagcacgtc agcatcgtcg ccgacaaggt ccagccgcac agcctcggcg cggtcggctg
     1861 ggacgacgag ggcgttccgg cgcagaagtg ggacctgatc cgcgacggca agctggtcaa
     1921 cctgcaggcg atccgcgacc aggcgcacct gctcggcctc gaccattcgc agggctgctg
     1981 ctacgccgac tcgtggtcga gcgtgcagtt ccagcgcatg cccaacgtgt cgctgcaggc
     2041 gggcgcgaag ccgctgaccc cggccgagat gatcaaggac gtcgagaacg gcatctacat
     2101 catcggcgac ggttcgttct cgatcgacca gcagcgctac aacgcgcagt tcggcggcca
     2161 gctgttctac gagatcaaga acggccggat cacccgcatg ctcgaggacg tcacctacca
     2221 gatgcgcacg ccggagttct ggaacgcgtg cgccggggtc tgcgaccagc gcgactaccg
     2281 cctcaacggt tccttcttcg acggcaaggg ccagccgcag caggtttcgg cggtctcgca
     2341 cggcgcggcc acggcccgct tcaacggcat caacgtcatc agcagcgcgc gcagcctcgg
     2401 ctgaccacag ggagacagcg aatgagcatc ctcaccgagg cccaggccaa ggcgatcctc
     2461 gacaaggtcc tggccctgtc gaaggccgac gaatgcaccg cgcggctggc gggatcgatc
     2521 gacggcaacg tccgcttcgc cctcaacaac gtgtccacca gcggcgtggt cagcgatacc
     2581 gaactcgcgg tgcaggtggc gttcggcaag cgcaccggcg tggccacc
//
LOCUS       DATIQC010000037         4944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_213714, whole genome shotgun sequence.
ACCESSION   DATIQC010000037 DATIQC010000000
VERSION     DATIQC010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213714"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..761
                     /locus_tag="VLM17_00770"
     CDS             <1..761
                     /locus_tag="VLM17_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR64126.1"
                     /translation="GMRALGVTLTVQDFGVGGLSFAALAQYPLDRLKVDRSFIRNVAS
                     DPRSAAIVRGIIAMGHRLGMKVVAKGVENEAELGFLRRNHCDYFQGYLFCPPMPAEGL
                     DELIRKRFLLPQLFAATTPERTLLLVDDEENVLRSLARLFRRDGYQILTAGSVREAFD
                     LLASRSVQVIVSDQRMADMNGTEFLTRVRDLHPDTVRMVLSGYTDLATITEAINRGAI
                     YRFLTKPWNDDELREHIRDAFRAHEERAAGNDGY"
     gene            complement(807..2045)
                     /locus_tag="VLM17_00775"
     CDS             complement(807..2045)
                     /locus_tag="VLM17_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64127.1"
                     /translation="MSERNEPKHGTPWSEDILWALSVVDNAALLLDGGDRVTHANAAA
                     RALAARAFPARVDPAPEALLGLLPVGAWEQARRDGRWRGSVVAAGGALAIEFAAYAGA
                     HDGIERRFVMFDDVTARVDRVSELSQRHDELQRTYHRLANTQEQLLQAEKMASIGQLA
                     AGVAHEINNPIGYVHSNLGTLREYCGALTTLVEAYAAECPAEDADAPLRRLRERLDID
                     FILGDLPQLLDESREGIERVTKIVQDLKEFSHVGREEEMRAADLHKGLDSTLNIVWNE
                     LKYKVQLEKHYGELPPVECHASELNQVFLNLLINAGQAIAERGTIVLATGVDEGRVWV
                     SIADSGCGIAEDALQRIFDPFFTTKPIGRGTGLGLAIAYRIVAKHHGRIEVQSRPGFG
                     STFRVVLPVRQPREAVDGVD"
     gene            complement(2042..2377)
                     /locus_tag="VLM17_00780"
     CDS             complement(2042..2377)
                     /locus_tag="VLM17_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HSR64128.1"
                     /translation="MNAAGVLADLEQALQAERQALLDQDAEALMRSTQAKLAAVRALQ
                     GLPADAVAPERVRALSELNLANHVLLSRRRREVGWALRHLGRVESAGVYDASGQSGVR
                     PQARCLGVG"
     gene            complement(2374..2673)
                     /gene="flgM"
                     /locus_tag="VLM17_00785"
     CDS             complement(2374..2673)
                     /gene="flgM"
                     /locus_tag="VLM17_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014503328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HSR64129.1"
                     /translation="MTQKIDGGLPRIDSVATTATSRAGTDRATPVAAPEGDSLRLTGE
                     ASGLQTLARELGAAPAGIDMAKVNAVRAALADGSYQVDPARIADRLLGLERDLAG"
     gene            complement(2762..3421)
                     /gene="flgA"
                     /locus_tag="VLM17_00790"
     CDS             complement(2762..3421)
                     /gene="flgA"
                     /locus_tag="VLM17_00790"
                     /inference="COORDINATES: protein motif:HMM:TIGR03170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HSR64130.1"
                     /translation="MRSIVLLPLLASLLAAPAARAVDAQPLEAIRLAAYQALGADPAR
                     AEATLSPGLHLTACAQPLQAVASGPRTALVRCADAPGWKLYVPVAAHREGDVVVLRTP
                     AAAGVPLSADQLVVQRRTLPDDGQAPASDPAALVGQVPVRALAPGAIPAATDFSAGPP
                     LQRGDPVVLLTRIGGIEVRMAGRALGTTRQGGLVSAENVDSHRVVRGRLSAPGVVELL
                     Q"
     gene            3733..4653
                     /locus_tag="VLM17_00795"
     CDS             3733..4653
                     /locus_tag="VLM17_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HSR64131.1"
                     /translation="MSRDLLDRIDQRIRLAGHNRLALLLFRLGSRQLFGVNVFKVQEV
                     LPRPPLFRLPQLPRAFAGAADVRGRTVPVLDLARAIGQQHEQGEPNYLVVTEFNRSVQ
                     GFLVTGVERIVNIAVEDIQPPPEFGGDCHYLTGITRHHGELIQLIDVESVLAESAPRA
                     QETSTLAPVEVAAEVPHSVLVVDDSRVARNQIRVVLEQLGLEAVLLSDGRQALDHLSQ
                     MAQAGQPPGQRYAMVISDIEMPAMDGYTLTTEIRRNPALSDLFVLLHTSLSGVFNQAM
                     VERVGADDFVPKYSEKELAERIQARVMALA"
     gene            4793..>4944
                     /locus_tag="VLM17_00800"
     CDS             4793..>4944
                     /locus_tag="VLM17_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003482950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body protein"
                     /protein_id="HSR64132.1"
                     /translation="MSDPIQSESFLGIHGTALALREQRLQLLSANLANADTPGFKAQD
                     LDFNAAL"
BASE COUNT          678 a         1780 c         1769 g          717 t
ORIGIN      
        1 cgggaatgcg ggcgctgggc gtcaccctca ccgtgcagga cttcggcgtc ggcgggctca
       61 gcttcgccgc gctcgcgcag tacccgctcg accgcctgaa ggtcgatcgc agcttcatcc
      121 gcaacgtcgc cagcgacccg cgcagcgcgg cgatcgtgcg cggcatcatc gcgatgggcc
      181 atcgcctggg catgaaggtg gtggccaagg gcgtggagaa cgaggccgag ctcggcttcc
      241 tgcgccgcaa ccactgcgac tatttccagg gctacctgtt ctgcccgccg atgccggccg
      301 agggcctgga cgaactgatc cgcaagcgct tcctgctgcc gcagctgttc gccgcgacca
      361 cgcccgagcg caccctgctg ctggtcgacg acgaggagaa cgtgctgcgc tcgctcgcgc
      421 gcctgttccg ccgcgacggc taccagatcc tcaccgccgg cagcgtccgc gaagccttcg
      481 acctgctggc cagccgcagc gtgcaggtga tcgtgtccga ccagcgcatg gccgacatga
      541 acggcaccga gttcctgacc cgcgtgcgcg acctccatcc ggacaccgtc cgcatggtgc
      601 tgtccggcta caccgacctc gccacgatca ccgaggccat caaccgcggc gcgatctacc
      661 ggttcctgac caagccgtgg aacgacgacg agctgcgcga gcacatccgc gacgccttcc
      721 gcgcgcacga ggagcgggcg gcggggaacg acggctactg agcgtgcctg cctttccgcc
      781 gcatccggca ggcgcccggc gacacgctag tcgacgccgt cgaccgcctc gcgcggctgc
      841 ctgaccggca gcaccacgcg gaaggtgctg ccgaagcccg gccggctctg cacctcgatg
      901 cgaccgtggt gcttggccac gatgcggtag gcgatggcga ggccgaggcc ggtgccgcgg
      961 ccgatcggct tggtggtgaa gaacggatcg aagatgcgct gcagcgcgtc ctcggcgatg
     1021 ccgcagccgc tgtcggcgat gctcacccac acgcggccct cgtcgacccc ggtcgccagc
     1081 acgatcgtgc cgcgttcggc gatcgcctgg cccgcgttga tcagcaggtt gaggaatacc
     1141 tggttgagct cggacgcatg gcactccacc ggcggcagct cgccatagtg cttctccagc
     1201 tgcaccttgt acttgagctc gttccagacg atgttgaggg tggaatccag gcccttgtgc
     1261 aggtcggccg cgcgcatttc ctcctcgcgg ccgacgtgcg agaactcctt caggtcctgc
     1321 acgatcttgg tcacccgctc gatgccttcg cgcgattcgt cgagcagctg cggcaggtcg
     1381 ccgaggatga agtcgatgtc cagccgctcg cgcaggcggc gcagcggggc gtccgcgtcc
     1441 tcggcggggc actcggcggc gtaggcctcg accagcgtgg tcagcgcgcc gcagtactcg
     1501 cgcagcgtgc cgaggttgga gtgcacgtag ccgatcgggt tgttgatctc gtgggcgacg
     1561 ccggcggcga gctggccgat cgaggccatc ttctcggcct gcagcagctg ctcctgggtg
     1621 ttggcgagcc ggtggtaggt gcgctgcagt tcgtcgtggc gctggctcag ttccgacacg
     1681 cggtccacgc gcgcggtgac gtcgtcgaac atcacgaaac ggcgttcgat gccgtcgtgc
     1741 gcgccggcat aggcggcgaa ctcgatcgcc agggcgcccc cggcggcgac cacgctgccg
     1801 cgccagcggc catcgcggcg ggcctgctcc caggcaccga cgggcagcaa cccgagcagc
     1861 gcctcgggcg cgggatcgac ccgcgcgggg aacgcgcgcg cggcgagcgc gcgcgccgcc
     1921 gcgttggcgt gggtgacgcg gtcgccgccg tcgagcagca gcgccgcgtt gtcgaccacc
     1981 gacagcgccc agaggatgtc ctcgctccag ggcgtgccgt gcttgggttc gttgcgttcg
     2041 ctcatcccac cccgaggcag cgcgcctgcg ggcggacgcc ggactgcccc gaagcatcgt
     2101 acacgccggc cgactccacg cggccgagat ggcgcagcgc ccagccgact tcgcggcggc
     2161 ggcggctgag caggacgtgg ttggccaggt tgagttcgct gagcgcgcgc acgcgctcgg
     2221 gcgccacggc gtcggccggc aggccctgca gcgcgcgcac cgcggcgagc ttggcctggg
     2281 tggagcgcat cagcgcctcg gcgtcctggt cgagcagggc ctggcgctcg gcctgcagcg
     2341 cctgctcgag gtcggcgagg acgccggcgg cgttcatccg gcgaggtcgc gctcgaggcc
     2401 gagcaggcgg tcggcgatgc gcgccgggtc gacctggtag ctgccgtcgg cgagggccgc
     2461 gcgcacggca ttcaccttgg ccatgtcgat gccggccggt gccgcgccga gttcgcgcgc
     2521 cagtgtctgc aggcccgaag cctcgccggt caggcgcagg ctgtcgcctt ccggggcagc
     2581 gaccggcgtg gcacggtcgg tgcccgcgcg cgaggtggcg gtggtcgcca cgctgtcgat
     2641 gcgcggcagg ccgccgtcga tcttctgggt catcgcacgc tcctgggtgc tgtgttcgag
     2701 cccggtaacg gccgcccgtc cgggaacttt agcggtcggt cacgaaaagg ggcgcggggg
     2761 gtcactgcag taactcgacc acgcccgggg cggacaggcg gccgcgcacg acccgatggc
     2821 tgtcgacgtt ttcggccgac accagcccac cttgacgggt ggtgccgagc gcgcggccgg
     2881 ccatgcgcac ctcgatcccg ccgatgcggg tgagcagcac gaccgggtcg ccgcgctgca
     2941 gcggcggacc ggcgctgaag tcggtggcgg cgggtatcgc gccgggcgcg agcgcgcgca
     3001 ccggcacctg cccgaccagc gcggccggat cgctggccgg cgcctggccg tcgtcgggaa
     3061 gggtgcggcg ctgcacgacg agctggtcgg cgctcaacgg cacgccggcc gcggcgggcg
     3121 tgcgcaggac caccacgtcg ccctcgcggt gcgcggccac cggcacgtag agcttccagc
     3181 cgggcgcgtc ggcgcagcgc accagcgcgg tgcgcgggcc gctggccacc gcctgcagcg
     3241 gctgggcgca agcggtcagg tgcaggccgg gcgagagcgt ggcttcggcg cgggcgggat
     3301 ccgcgcccag cgcctggtag gcggcgagcc ggatcgcctc gagcggctgc gcatcgaccg
     3361 cccgcgccgc gggagcggcg aggaggctgg cgagcagcgg caggaggacg atcgaacgca
     3421 cggacggatt ccggactagg cattcggcgc gtgcaagcgg cgtgccagca ggaaatgcgt
     3481 tgtcgcgctc tgttcgagca gccgattccc tcaccggaca atcccgaagt cgcatccggt
     3541 cgacggattg tcctgtcggg gggccatttc ttcttttggt gcactcggcc gcggcagcgg
     3601 acgaagacct gcgctttcgg ggaagggtca aagtcgctgg atccccgctt tcgcggagat
     3661 gacgacggag aacagcgggt cgcggcttac gccgctccta cagattcacc gagcccggcc
     3721 gacatcgcgg gcatgagccg cgacctcctc gaccgcatcg accagcgcat ccgcctggcc
     3781 ggccacaacc gcctggcgct gctgctgttc cggctcggct cgcgtcagct ttttggcgtg
     3841 aacgtgttca aggtccagga agtgctgccg cgcccgccgc tgttccggct gccgcagctg
     3901 ccgcgtgcct tcgccggcgc cgccgacgtg cgcggccgca ccgtgccggt gctcgacctc
     3961 gcccgcgcga tcggccagca gcacgagcag ggcgagccga actacctcgt ggtcaccgag
     4021 ttcaaccgct cggtgcaggg cttcctggtc accggcgtcg agcgcatcgt caacatcgcg
     4081 gtcgaggaca tccagccgcc gccggagttc ggcggcgact gccactacct caccggcatc
     4141 acccgccacc acggcgagct gatccagctg atcgacgtcg agagcgtgct cgccgaatcc
     4201 gcgccgcgcg cgcaggaaac ctcgacgctg gccccggtcg aggtcgccgc cgaggtgccg
     4261 cattcggtgc tggtggtgga cgactcgcgc gtcgcccgca accagatccg cgtcgtgctc
     4321 gaacagctcg gcctggaggc ggtgctgctg tccgacggcc gccaggcgct cgaccacctc
     4381 agccagatgg cgcaggccgg ccagccgccc gggcagcgct acgcgatggt catttccgac
     4441 atcgagatgc cggccatgga cggctacacc ctgacgacgg aaatccgtcg caatcccgcc
     4501 ctgtccgacc tgttcgtgct gctgcacacc tcgctctcgg gggtgttcaa ccaggcgatg
     4561 gtggagcggg tgggggcgga cgacttcgtc ccgaagtatt cggaaaagga gctggccgaa
     4621 cgcatccagg cgcgggtgat ggcgctggcg tagcccgggc aaggccgaag gccgcacccg
     4681 ggaaccggcc agggttgtcc cccgggtgcg gccttcggcc ttgcccgggc ctcctgccgt
     4741 cgccgctggc acgccgcttg cctcgcctcc gccgcatccc gcggaggcgg ccatgtccga
     4801 tccgatccaa tccgagtcct tcctcggcat ccacggcacc gcgctcgccc tgcgcgagca
     4861 gcggctgcag ctgctgtcgg ccaacctcgc caacgccgac acccccggct tcaaggccca
     4921 ggacctcgac ttcaacgccg cgct
//
LOCUS       DATIQC010000038         8623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_496282, whole genome shotgun sequence.
ACCESSION   DATIQC010000038 DATIQC010000000
VERSION     DATIQC010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8623
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496282"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..186
                     /locus_tag="VLM17_00805"
     tRNA            113..186
                     /locus_tag="VLM17_00805"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:145..147,aa:Cys,seq:gca)
     gene            complement(267..2654)
                     /gene="ppsA"
                     /locus_tag="VLM17_00810"
     CDS             complement(267..2654)
                     /gene="ppsA"
                     /locus_tag="VLM17_00810"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015463160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008986 - pyruvate, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HSR64133.1"
                     /translation="MTANILWLHDLRLSDLAQVGGKNSSLGEMIGQLADLGVSVPGGF
                     ATTADAFRAFIAHNDLHQRIYDRLATLDVEDVPALTRAGAEIRGWVIDAPLQPDLDRD
                     IRAAYARLCADNAGAAAGANDVAVAVRSSATAEDLPDASFAGQQETFLNVTGADDVVH
                     KVKEVFASLYNDRAIAYRVHHGFKHEDVFLSAGVQLMVRSDVGASGVLFTLDTESGFR
                     DVVFITSSYGLGEMVVQGAVNPDEFYVYKPTLREGRYAILRRSLGAKQMRMVYSASPG
                     ERVRTEETPADLRGRFSISDADVQELAKQSLVIEQHYGRPMDIEWAKDGVSGKLFIVQ
                     ARPETVKSRAKATQIERYTLGRRGEVVAEGRAIGQKIGSGVARVVRSLDDMNHVQPGD
                     VLVADMTDPDWEPVMKRASAIVTNRGGRTCHAAIIARELGVPAVVGTGNALDAIRDGH
                     QVTVSCAEGDTGFIYEGALPFERTTTDLANMPPAPLKIMMNVANPDRAFDFGQLPNAG
                     IGLARLEMIIASHIGVHPKALLEYSRQDAETRKKIDAKIAGYAGPVDFYVDRLAEGIA
                     TITASVAPNPVIVRLSDFKSNEYANLIGGSKYEPHEENPMIGFRGASRYVDPSFKDAF
                     ALECRAVKKVREEMGLTNLWVMIPFVRTLGEGRRVLEVLAENGLRQGDGGLKVIMMCE
                     VPSNALLADEFLDLFDGFSIGSNDLTQLTLGLDRDSGIVANLFDERDPAVKKMLSMAI
                     STARAKGKYIGICGQGPSDHPDLAEWLMQQGIESVSLNPDTVVDTWLRLAKAKAG"
     gene            2747..3568
                     /locus_tag="VLM17_00815"
     CDS             2747..3568
                     /locus_tag="VLM17_00815"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HSR64134.1"
                     /translation="MTSIRPVFYVSDGTGITAETIGHTVLTQFSGTRFLTDRIPFVDN
                     EDKAHATAAEIRRAGHAHGTRPIVVNSCVNPALTAILAESGALMLDVFEPFIAPLERE
                     LGEQRQSRVGRAHGMVDFEAYHRRINAMNYALSHDDGIGADYSEADVVLVGVSRAGKT
                     PTCVYLALHYGVCAANYPLTEEDLETDRLPARLRPYRNKLFGLTIDPERLHQIRQERR
                     PDSRYARLETCRSEVAAAEAMMRTEGIEMLSTTHASIEEISSRVLEELGINREMF"
     gene            3666..4142
                     /locus_tag="VLM17_00820"
     CDS             3666..4142
                     /locus_tag="VLM17_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 domain-containing protein"
                     /protein_id="HSR64135.1"
                     /translation="MSKVLSRATRIPRIGRFAWLMGLYAENHERLVRLFEPADLAPGS
                     YVSAIGDGLDLRLDVIEQHRYTTELRLTYALRDPLTGEPDPSAFLRAYHDARQVEATH
                     CYVGRRWQDVLGLFPPPAALLDHRLRMNTFLGKWLQYLGERGHGVATLREAEREAA"
     gene            4208..4283
                     /locus_tag="VLM17_00825"
     tRNA            4208..4283
                     /locus_tag="VLM17_00825"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4241..4243,aa:Ala,seq:ggc)
     gene            4338..4413
                     /locus_tag="VLM17_00830"
     tRNA            4338..4413
                     /locus_tag="VLM17_00830"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4372..4374,aa:Glu,seq:ttc)
     gene            4565..4984
                     /locus_tag="VLM17_00835"
     CDS             4565..4984
                     /locus_tag="VLM17_00835"
                     /inference="COORDINATES: protein motif:HMM:NF033807.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopL family metal-binding regulatory protein"
                     /protein_id="HSR64136.1"
                     /translation="MTRWSILLRVLLSLSLVLNGAMAVAAPMDAMHAHAGGSVRGEAV
                     VAVDAMPCHGHHHGADAGTGRHPAASPPTPGKPAQPAPGCCSAGACACTCAQLAPAMP
                     ANPACSPAACGHEAGLAVATQEHPDPALPQLIRPPIG"
     gene            5080..6837
                     /locus_tag="VLM17_00840"
     CDS             5080..6837
                     /locus_tag="VLM17_00840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005375 - copper ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_process: GO:0006825 - copper ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance system multicopper oxidase"
                     /protein_id="HSR64137.1"
                     /translation="MSFDSFGHADGPRQPARRRFVQGLAAGGALAGLGAWSRPGWALA
                     VAGGPGVLAGTDFDLVIGQVPVNITGRTRPAVTVNGSLPAPLLRWREGTTVTLRVRNA
                     LPEGSPYGHDTSIHWHGILLPANMDGVPGISFAGIGHGETYQYRFTVRQAGTYWYHSH
                     SAFQEQAGLYGPLVIDPVEPEPFSYDRDYVVMLTDWTDLDPRALFSRLKKMSSYDNYH
                     RRTVGDFFADVGRYGLAATIEDRKMWGGMRMTPTDLSDVNANTYTYLMNGTTSPGNWT
                     GLFRAGEKVRLRFINGSSMTYFDVRIPGLKMTVVAADGQYVHPVTVDEFRIATAEVFD
                     VIVEPAGQDAFTIFAQDMGRTGYVSGTLAVRPGLRAPVPALDPRPILTMSDMAMGAMG
                     QGSHAMAGMHDHAMGGMQAHPASEAGNPLVDMQAMDPKPRLDKPGIGLRGNGRTVLTY
                     GMLRSAFEDPDGRDPGREIELHLTGHMEKFAWGFNGQKFSEVEPLRFNYGERLRIVLV
                     NDTMMSHPIHLHGMWSDLEDGEGRFHLRKHTVDMPPGTRRSYRVRADALGSWAYHCHL
                     LYHMEAGMMRQVRVEEGTS"
     gene            6834..7865
                     /locus_tag="VLM17_00845"
     CDS             6834..7865
                     /locus_tag="VLM17_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein B"
                     /protein_id="HSR64138.1"
                     /translation="MTRFRPRFLAAAVAVVVMPAAAFAQDSGHAGMQMPMNMPMPAPS
                     AKKPTGSPKPRTGHAQHQHRASPAPGAPAPAESAPPGSMAMPEDRPMDMPMDHPAMEQ
                     AQGAAVPRTPIPPLTDADRAAAVPPPGDHPVHDNPVESYTVFNRLEGWDASPGSGLHW
                     EGSSWIGTDRNRLWLRSEGEERGRLESADVEVLYGRSVSPWWDVVGGVRHDFKPGASQ
                     DWAAIGVVGLAPYKFEVAATAYIGQAGQTAARLEAEYETLFTNRLILQPLVEVNLHGR
                     DDPARGVGAGLSTAEAGLRLRYEITRRFAPYIGVVRERAFGRTADYRRADGEDTNDTR
                     VVAGVRIWF"
     gene            7917..>8623
                     /locus_tag="VLM17_00850"
     CDS             7917..>8623
                     /locus_tag="VLM17_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008434921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSR64139.1"
                     /translation="MLLFVVALLVIGGFVWSGLYNVGADDPHTRPVLALVETLRDRSI
                     ASRSKDIAVPDLEDAGLVLEGAGQYAAMCTGCHLAPGMEDSEIRPGLYPRPPELAKVR
                     VDPKVAFWVIKHGVKMSAMPAWGGSHDDPTIWSMVAFLQKLPTLTPAQYRDLVAKAPP
                     DDDMEGGHHHHDGMDAHDGEGTGGVSEHVHPGTPRDTAAIEGYAPEAVPAAEEVANAF
                     HAALKAGDRQKVLALLSP"
BASE COUNT         1352 a         2983 c         2933 g         1355 t
ORIGIN      
        1 cgagttcgag tctcgtttcc cgctccaggt tccacggacc ccggccatgc cggggtttgt
       61 tttttgatat cgcgcgatcc tgccgcggta tggaacaatc cagatcgtca ccggccgggt
      121 ggcagagtgg ttatgcagcg gactgcaaat ccgcgtacgc cggttcaatt ccgacctcgg
      181 cctccaacaa agaaccccgc agcgatgcgg ggttttttct ttccgtctgc atgcactttc
      241 gacgcgcgaa cggcgtgcgg ccggcgtcag ccggccttgg ccttcgcgag ccgcagccag
      301 gtgtcgacca ccgtgtcggg attcagcgac accgactcga tgccctgctg catcagccat
      361 tcggcgagat ccgggtggtc gctcgggccc tggccgcaga tgccgatgta cttgcccttc
      421 gcgcgcgcgg tcgagatcgc catcgacagc atcttcttga ccgccgggtc gcgctcgtcg
      481 aacagattgg cgacgatgcc ggaatcgcgg tcgaggccga gcgtgagctg ggtcaggtcg
      541 ttcgacccga tcgagaaacc gtcgaacagg tcgaggaact cgtcggccag cagcgcgttc
      601 gacggcacct cgcacatcat gatgaccttg aggccgccat cgccctggcg caggccgttc
      661 tcggcgagga cctcgagcac cctgcggcct tcgcccagcg tgcgcacgaa cgggatcatg
      721 acccacaggt tggtcagccc catttcctcg cgcaccttct tcaccgcgcg acattcgagg
      781 gcgaacgcgt ccttgaacga cggatcgaca tagcggctcg cgccacggaa gccgatcatc
      841 gggttctcct cgtgcggctc gtacttgctg ccgccgatga ggttggcgta ttcgttcgac
      901 ttgaagtcgg acaggcgcac gatgacgggg ttcggcgcga ccgacgcggt gatcgtcgcg
      961 atgccctcgg cgaggcggtc gacgtagaag tcgaccgggc cggcgtaacc cgcgatcttg
     1021 gcgtcgatct tcttcctcgt ctccgcgtcc tggcggctgt attcgagcaa cgccttcggg
     1081 tgcacgccga tgtggctggc gatgatcatc tcgaggcgcg cgaggccgat gccggcgttc
     1141 ggcagctggc cgaagtcgaa cgcgcggtcg ggattcgcca cgttcatcat gatcttgagc
     1201 ggcgccggcg gcatgttggc gaggtcggtc gtggtgcgtt cgaagggcag ggcgccttcg
     1261 tagatgaagc cggtgtcgcc ctcggcgcag ctcaccgtca cctggtggcc gtcccggatc
     1321 gcatccagcg cgttgccggt gccgaccacc gccggcacgc ccaactcgcg cgcgatgatc
     1381 gcggcgtggc aggtgcggcc gccacggttg gtgacgatgg cggaagcgcg cttcatcacc
     1441 ggctcccagt cggggtcggt catgtcggcg acgagcacgt cgcccggctg cacgtggttc
     1501 atgtcgtcga gcgagcgcac cacgcgcgcc acgccgctgc cgatcttctg gccgatcgcg
     1561 cggccttcgg cgacgacctc gccccgcctg cccagcgtgt agcgctcgat ctgggtcgcc
     1621 ttggcgcgcg acttcaccgt ttccgggcgc gcctgcacga tgaacagctt gccgctgacg
     1681 ccgtccttcg cccattcgat gtccatcggg cggccgtagt gctgctcgat caccagcgac
     1741 tgcttcgcca gttcctgcac gtcggcgtcg gagatcgaga acctgccgcg gaggtcggcc
     1801 ggcgtctcct cggtgcgcac gcgctcgccg gggctggccg aatagaccat ccgcatctgc
     1861 ttggcgccga gcgagcggcg caggatcgcg tacctgcctt cgcgcagggt cggcttgtag
     1921 acgtagaact cgtccgggtt gaccgcgccc tgcacgacca tttcgcccag gccgtagctg
     1981 gaagtgatga acaccacgtc gcggaatccc gactcggtgt cgagggtgaa cagcacgccc
     2041 gaggcgccga cgtccgagcg caccatcagc tgcacgccgg cggagaggaa cacgtcttcg
     2101 tgcttgaagc cgtggtgcac gcggtaggcg atcgcgcggt cgttgtacag cgacgcgaag
     2161 acctccttga ccttgtgcac gacgtcgtcg gcgccggtga cgttgaggaa ggtttcctgc
     2221 tggccggcga agctggcgtc gggcaggtcc tcggccgtcg ccgaggaacg caccgccacg
     2281 gccacgtcgt tcgcgccggc ggcggcgccg gcgttgtccg cgcacagcct ggcgtaggcg
     2341 gcgcggatgt cgcgatcgag gtcgggctgc agcggcgcgt cgatcaccca gccgcggatc
     2401 tcggcgccgg cgcgggtcag ggcggggacg tcctcgacgt cgagcgtcgc cagcctgtcg
     2461 tagatgcgct ggtgcaggtc gttgtgggcg atgaaggccc ggaaggcgtc ggccgtcgtc
     2521 gcgaacccgc cgggcaccga cacgccgagg tccgcgagct ggccgatcat ctcgccgagc
     2581 gacgagttct tgccgcccac ctgggcgagg tcggacaggc gcaggtcgtg cagccacagg
     2641 atgttggcgg tcaaggcggg ctccggcgga aggaaagagc cgggcgggac ccggccgaag
     2701 cgattatttt agcaagcccc cgtcaaccgg ccgtacgcag gaaccgatga cctccatccg
     2761 ccccgtgttc tacgtgtccg acggcaccgg catcaccgcc gaaaccattg gccacaccgt
     2821 gctgacccag ttctccggca cgcggttcct caccgatcgc attcccttcg tcgacaacga
     2881 ggacaaggcg cacgccaccg cggccgagat ccggcgcgcc ggtcatgccc acggcacccg
     2941 cccgatcgtg gtgaactcct gcgtcaaccc cgcgctgacc gcgatcctgg ccgagagcgg
     3001 ggcgctgatg ctggacgtct tcgagccgtt catcgccccg ctcgagcgcg aactcggcga
     3061 gcagcggcag tcgcgcgtcg gccgcgcgca cgggatggtc gacttcgagg cctaccaccg
     3121 ccgcatcaac gcgatgaact acgcgctcag ccacgacgac gggatcggcg cggactacag
     3181 cgaggccgac gtggtcctgg tcggggtgtc gcgcgcgggc aagacgccga cctgcgtata
     3241 cctggcgctt cattacggcg tgtgcgcggc caactatccg ctgaccgagg aggacctaga
     3301 gaccgaccgg ctgccggcgc gcctccggcc ctaccggaac aagctgttcg ggctgaccat
     3361 cgatccggaa cgcctgcacc agatccgcca ggagcgcagg cccgattcgc gctacgcgcg
     3421 cctggaaacc tgccgcagcg aagtggccgc cgcggaggcg atgatgcgca ccgaaggcat
     3481 cgagatgctg agcacgacgc acgcatcgat cgaggaaatc tcgagccgcg tgctggaaga
     3541 gctgggcatc aatcgcgaga tgttctgagc gggagccaaa cacgctcgtc gaaacgcgat
     3601 gttggacccc gctggcagtc aggtcaacgg ctgtccggcg cgcccatcgc gtgtagcatc
     3661 ggggcatgag caaggtgttg tcccgcgcca cccgcatccc gcgcatcggt cgcttcgcgt
     3721 ggctgatggg cctgtacgcg gagaaccatg aacggctggt gcgcctgttc gaaccggcgg
     3781 acctcgcacc cggcagctac gtctcggcga tcggcgacgg gctcgacctg cgcctggacg
     3841 tgatcgagca gcatcgctac accaccgagc tccggctgac ctacgcattg cgcgatccgc
     3901 tcaccggcga gcccgatccg tccgccttcc tgcgcgcgta ccacgacgcg cggcaggtcg
     3961 aagcaaccca ttgctacgtg gggaggcgct ggcaggacgt gctgggcctg ttcccgccgc
     4021 cggccgcgct gctcgaccat cgcctgcgga tgaacacgtt cctcggcaaa tggctgcagt
     4081 acctgggcga gcgcgggcac ggcgtggcga cgctgcgaga ggccgaacgc gaggcggcgt
     4141 gagttttcgc gcgaaggcgc ttgacgctcc tgaatgccgt ccctagaatg ttgcgctttc
     4201 cagcagtggg gccatagctc agctgggaga gcgctacaat ggcattgtag aggtcgccgg
     4261 ttcgatcccg gctggctcca ccaagttcgg attttccgcg agcgaccttc gcggcctgcc
     4321 aggcaggcaa ccaacaggtc cccatcgtct agaggcctag gacattaccc tttcacggta
     4381 gcgaccgggg ttcgaatccc cgtggggacg ccacacagga aggcccgccg agtgcgggcc
     4441 ttttcttttg ccgccgctcc ggccgcttct tcgccgcgac ggccgccccg gcgaggcgtc
     4501 acccggttgc ggagtggacg gcgtcttcgt ttccagtcga cgacgcgcgg tttagagtag
     4561 gcacatgacg cgctggtcca tcctgctgcg ggtgttgctg agcctgagcc tcgtgctgaa
     4621 cggggcgatg gcggttgccg cgccgatgga cgcgatgcac gcccatgcgg gcggctccgt
     4681 gcgcggcgaa gcggtcgtgg ccgtcgatgc gatgccatgc cacggacacc accatggcgc
     4741 ggatgccggc acgggccgcc atccggcggc atcccccccg acgcctggca aacccgcgca
     4801 gcctgcaccc ggctgctgca gcgccggcgc gtgcgcatgc acctgtgcgc agctggctcc
     4861 ggccatgccg gcgaacccgg cctgctcgcc ggcggcctgc ggacacgagg cgggcctcgc
     4921 cgtcgccacg caggagcacc cggaccccgc gttgccgcaa ctcatccgac ctcccatcgg
     4981 ctaggcccgg gcgcatcggc gcccgtctgc ccgcgcccgg cgttcgcccg gcgcaaatcc
     5041 gcgacgcctg cgtgtcgcca gatgcctgct ggagttccca tgtccttcga ttccttcggc
     5101 catgccgacg gtccgcgcca gccggcgcga cgccgcttcg tgcagggcct cgccgccggc
     5161 ggcgcgctcg ccggactggg cgcctggtcg cgcccgggct gggcgctcgc ggtggcgggt
     5221 ggtccgggcg tgctcgccgg caccgacttc gacctcgtca tcggccaggt gccggtgaac
     5281 atcaccggcc gcacgcgccc ggcggtgacc gtcaacggct cgctgccggc gccgctgctg
     5341 cggtggcgcg aaggcaccac cgtcaccctg cgcgtccgca atgcattgcc ggaaggctcg
     5401 ccgtacggcc acgacacctc gatccattgg cacggcatcc tgctgccggc gaacatggat
     5461 ggcgtgccgg gcatcagctt cgccggcatc ggccatggcg agacctacca gtaccgcttc
     5521 accgtgcggc aggcgggcac ctactggtac cacagccatt ccgcgttcca ggaacaggcc
     5581 ggactgtatg gcccgctggt gatcgatccg gtcgaaccgg agccgttctc ctacgaccgc
     5641 gactacgtgg tgatgctcac cgactggacc gacctcgatc cgcgggccct gttctcgcgc
     5701 ctgaagaaga tgtcgtccta cgacaactac caccggcgca cggtgggcga cttcttcgcc
     5761 gacgtgggcc gctacggtct cgcggcgacg atcgaggaca ggaagatgtg gggcggaatg
     5821 cgcatgaccc cgaccgacct gtcggacgtc aacgcgaaca cctacaccta cctgatgaac
     5881 ggcacgacgt cgcccgggaa ctggaccggc ctgttccgcg ccggcgaaaa ggtgcgcctg
     5941 cgcttcatca acggctcgtc gatgacctac ttcgacgtgc gcatcccggg gctgaagatg
     6001 accgtcgtcg cggcggacgg gcagtacgtg catccggtga ccgtcgacga attccgcatc
     6061 gccaccgccg aagtgttcga cgtgatcgtc gaaccggcgg gccaggacgc gttcaccatc
     6121 ttcgcgcagg acatggggcg taccggctac gtgagtggca cgctcgcggt gcgcccgggc
     6181 ctgcgcgcgc cggtgccggc gctcgatccg cgccccatcc tcaccatgtc cgacatggcg
     6241 atgggcgcga tggggcaggg cagccatgcc atggccggca tgcacgacca cgcgatgggt
     6301 ggcatgcagg cgcatccggc gagcgaagcc ggcaacccgc tggtcgacat gcaggcgatg
     6361 gatcccaagc cgcgcctcga caagccgggc atcggattgc gcggcaacgg ccgcaccgtg
     6421 ctgacctacg gcatgttgcg cagcgccttc gaggatcccg acggtcgcga ccccgggcgc
     6481 gagatcgaat tgcacctcac cggccacatg gagaagttcg cctggggctt caacgggcag
     6541 aagttctcgg aagtcgagcc gctccgcttc aattacggcg agcgcctgcg catcgtgctg
     6601 gtcaacgaca cgatgatgag ccatccgatc cacctgcacg gcatgtggag cgacctcgag
     6661 gacggggagg gcaggttcca tctccgcaag cacaccgtcg acatgccgcc cggcacccgc
     6721 cgcagctacc gcgtccgcgc cgatgcgctc ggcagctggg cctaccactg ccacctgctg
     6781 taccacatgg aagccgggat gatgcggcag gtgcgggtgg aggaaggaac gtcatgaccc
     6841 gcttccggcc ccgattcctg gcggctgccg tcgccgtcgt cgtcatgccc gccgctgcgt
     6901 tcgcccagga ttcgggccat gccggcatgc agatgccgat gaacatgccg atgcctgcgc
     6961 cgtcggcgaa gaaaccgacc ggctcgccga agccaaggac aggtcacgcg cagcaccagc
     7021 accgcgcatc gccggcaccg ggtgcgccgg caccggcgga gtcggctccg cccggctcga
     7081 tggcgatgcc ggaagaccgg cccatggaca tgccgatgga ccatccggcg atggaacagg
     7141 cccaaggcgc ggcggtgccg cgcacgccga tcccgccgct caccgacgcg gatcgcgccg
     7201 ccgccgtgcc cccacccggc gaccatccgg tccacgacaa tccggtcgag tcctacacgg
     7261 tcttcaaccg gctggaaggc tgggatgcca gtccgggcag cggcctgcac tgggaagggt
     7321 cgagctggat cggcaccgat cgcaaccgcc tgtggctgcg aagcgagggc gaggagcgcg
     7381 gccgactgga aagcgcggac gtcgaggtgc tctacggccg cagcgtgtcg ccctggtggg
     7441 acgtcgtcgg cggcgtgcgc cacgacttca agccgggtgc gtcgcaggac tgggccgcca
     7501 tcggcgtcgt ggggctggcg ccctacaagt tcgaggtcgc ggcgacggcg tacatcgggc
     7561 aagccggcca gaccgccgcg cgcctcgagg ccgaatacga aacgctgttc accaaccgcc
     7621 tgatcctgca gccgctggtg gaagtcaacc tgcatggccg ggacgatcca gcacgcggcg
     7681 tcggcgcggg tctctcgacg gcggaagcgg gactgcgcct gcgctacgag atcacccggc
     7741 gcttcgcgcc ttacatcggc gtggtgcggg aacgggcctt cggacgcacg gcggactacc
     7801 gtcgcgccga cggagaagac accaacgaca cccgcgtggt cgcgggggtc cgcatctggt
     7861 tctgacaggg ggaaatcgcc gtgccattcg tttcgcgcag ttcgctggtt tcgctgttgc
     7921 tgctcttcgt cgttgccctc cttgtgatcg ggggcttcgt ctggtccggg ttgtacaacg
     7981 tcggcgcgga cgacccgcac acccggcccg tgctcgcgct ggtggaaacg ctgcgcgacc
     8041 gctcgatcgc atcgcgatcg aaggacatcg cggtcccgga cctggaagat gccgggctcg
     8101 tcctcgaagg ggccggccag tacgccgcca tgtgcaccgg ctgccacctg gcgccgggca
     8161 tggaggactc ggagatcagg cccggcctgt atccgcggcc gccggaactg gccaaggtcc
     8221 gagtcgatcc caaggtcgcc ttctgggtca tcaagcacgg cgtgaagatg agtgccatgc
     8281 cggcctgggg cggcagccac gacgatccga ccatctggag catggtggcc ttcctgcaga
     8341 agctgccgac gctcacgccc gcgcaatatc gcgacctggt ggcgaaggcg ccgcccgatg
     8401 acgacatgga aggcgggcac catcatcacg acggcatgga tgcacacgac ggcgaaggaa
     8461 cgggcggcgt ttcggaacat gtccatcccg gaacgccccg ggacacggcg gccatcgagg
     8521 gctatgcgcc ggaggcggtg cccgcagccg aggaagtcgc gaatgccttc catgcggcgc
     8581 tgaaggcggg cgaccgccag aaggtgcttg cactgctctc gcc
//
LOCUS       DATIQC010000039         4397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_425859, whole genome shotgun sequence.
ACCESSION   DATIQC010000039 DATIQC010000000
VERSION     DATIQC010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4397
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425859"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2107)
                     /gene="bamA"
                     /locus_tag="VLM17_00855"
     CDS             complement(<1..2107)
                     /gene="bamA"
                     /locus_tag="VLM17_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017117511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HSR64140.1"
                     /translation="MTRTPTRRLLAVALAAALAPVLPAQAQSANPFSLGGASQPAADA
                     GAFTVSDIRVDGLQRISAGTVFTYLPIERGDSVDQARIAEAIRALYKTGFFDDVRVGR
                     QGDILVVTVSERPAINKLTLTGNKDIKTEDLTKGLQDIGLSEGETFDRLSLDRVTQEL
                     TRQYNNRGKYNVEISPEVARLDRNRVDVTIHIKEGDAARIRHINLVGNEKFPQDKITD
                     NWESRESNWLSWYRRDDQYSREKLSGDLEKLNEFYLDRGYLDFSVDSTQVEISPQKSD
                     MYLTASLSEGEQYTVSSIEVSGDTVLPKQRIEKLVLLKPGQTFSRRLLEFSSDSITAT
                     LGNIGYAFAQVNPVPTLDREKRTVGVNLQVIPGPRVNVRRILFKGNTRTADEVIRREM
                     RQFEGSWYSQAAIDRSKIRLQRLGYFETVDVENQPVPGTNDQVDVVFNVKETTSGSFI
                     FGLGYGQLGGLTTSIQVSQNNFLGSGNRVAVEAQRNRYMQRYSFSFTDPYFTDEGLSL
                     GYNLWYREFDNSNFNTASYNTTSGAAQVVLGLPITENDTVTALFGIDKNQIQAYRGVS
                     PASFVDYLDALNHRTFHAWRTQLGWARDTRNDYFMPTAGTFQQVSAEITLPGSTVEYY
                     KLNYNFSKYWPISRALVLNTRAEIGWGDSYGSPHTRSYYCTYPWIDADGDPATSGKKP
                     DPRPSRETCAPGDIDYNAYP"
     gene            complement(2163..3509)
                     /gene="rseP"
                     /locus_tag="VLM17_00860"
     CDS             complement(2163..3509)
                     /gene="rseP"
                     /locus_tag="VLM17_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009598722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HSR64141.1"
                     /translation="MSTFLGSVWWMIVSLGVLVTFHEFGHFWMARRNGVRVLRFSVGF
                     GRPLWLHRGKDGTEYAIAAIPLGGYVRMLDEREGDVAPDEVDRAFNRRPVGQRIAIVA
                     AGPLANLLLCVALLWAMFVVGRPDYAPVVGATEGIAMQAGLHRGDTLLAVGDRATPTW
                     SEAAVALAGAAMDRRDVALSVRAADGGHATRTLALSRLPAGFDESRALDAIGLVPRSR
                     LLPPVVGKVAPGTPAWGVLAERDRITAVDGAPVVAFEDIGPLLQRVGGQRVMVEVRRD
                     GERLALETTPRLQREAQGARWVLGIEPAPARQPPYDATLRYGPVAAVPAALHETWKLA
                     SDSLAMIGRLLTGHASVANVSGPITIARYANASAQLGPAWFLNFLALLSLTLAIMNLL
                     PIPVLDGGHLLYYLIELAKGSPLSERAMAVGQYIGLALLAGLMGLAFYNDILHLVR"
     gene            complement(3562..>4397)
                     /gene="dxr"
                     /locus_tag="VLM17_00865"
     CDS             complement(3562..>4397)
                     /gene="dxr"
                     /locus_tag="VLM17_00865"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005408741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HSR64142.1"
                     /translation="LAAARAGKRLLLANKESLVLAGELLMAASREAGATIVPVDSEHN
                     AIFQCLPDAAARAGLQRILLTASGGPFRGRTRASLRDVTPAQAVAHPKWSMGPKISVD
                     SATLMNKGLEVIEAHHLFGLDPARIGVLVHPQSLVHSLVEFVDGSTLAQLGLPDMRTA
                     LAVGFGWPDRIASGVAGLDLLQHGRLDFEPPDLDAFPCLRLAYAALDAGGTAPAILNA
                     ANEIAVAAFLDGRIGFLDIPALVDNALAALPSGESSLEALRAADAAARAHVAHAVAAG
                     A"
BASE COUNT          636 a         1415 c         1669 g          677 t
ORIGIN      
        1 tcgggtaggc gttgtagtcg atgtcgcccg gcgcgcaggt ctcgcgcgac ggacggggat
       61 ccggtttctt cccggaggtc gccgggtcgc cgtcggcatc gatccacgga taggtgcagt
      121 agtagctgcg cgtgtgcggg ctgccgtagc tgtcgcccca gccgatttcc gcgcgggtgt
      181 tgagcaccag cgcccgcgag atcggccagt acttggagaa gttgtagttg agcttgtagt
      241 actcgacggt cgaacccggc agcgtgattt ccgccgagac ctgctggaag gtgccggccg
      301 tcggcatgaa gtagtcgttg cgggtgtccc gcgcccagcc gagctgcgtg cgccaggcgt
      361 ggaaggtgcg gtggttgagc gcatccaggt agtcgacgaa ggacgcgggg ctgacgcccc
      421 ggtacgcctg gatctggttc ttgtcgatgc cgaacagcgc ggtgacggtg tcgttctcgg
      481 tgatcggcag gccgagcacg acctgcgccg cgccgctggt ggtgttgtag gaggcggtat
      541 tgaagttcga attgtcgaac tcgcggtacc acaggttgta acccagcgac aggccttcgt
      601 cggtgaagta cgggtcggtg aaggagaacg aatagcgctg catgtagcgg ttgcgctgcg
      661 cttccacggc gacgcggttg ccgctgccga ggaagttgtt ctgcgacacc tggatcgagg
      721 tggtcaggcc gccgagctgg ccgtagccga ggccgaagat gaagctgccg gaggtcgttt
      781 ccttgacgtt gaagaccacg tcgacctggt cgttggtgcc cggcaccggc tggttctcga
      841 cgtcgacggt ttcgaagtaa ccgaggcgct ggaggcggat cttggagcgg tcgatcgccg
      901 cctgcgagta ccagctgcct tcgaactggc gcatctcgcg gcggatgacc tcgtcggcgg
      961 tgcgcgtgtt gcccttgaac aggatgcggc gcacgttgac gcgcggcccc gggatgacct
     1021 gcaggttgac gccgaccgtg cgcttctcgc ggtccagggt cggcaccggg ttcacctgcg
     1081 cgaacgcata gccgatgttg cccagggtcg cggtgatcga gtcggagctg aattccagca
     1141 gccggcgcga gaaggtctgg ccgggcttga gcaggaccag cttctcgatg cgctgcttgg
     1201 gcagcacggt gtcgccgctg acctcgatgc tggaaaccgt gtactgctcg ccctcgctca
     1261 ggctggcggt caggtacatg tcgctcttct gcgggctgat ctcgacctgc gtgctgtcga
     1321 cgctgaaatc gaggtacccg cggtcgaggt agaactcgtt gagcttctcc aggtcgcccg
     1381 acagcttctc tcgcgagtac tggtcgtcgc ggcggtacca gctgagccag ttgctctcgc
     1441 gcgactccca gttgtccgtg atcttgtcct gggggaactt ctcgttgccg acgaggttga
     1501 tgtggcggat gcgcgcggcg tcgccttcct tgatgtggat ggtgacgtcg acgcggttgc
     1561 ggtcgagccg ggccacttcc ggcgagatct cgacgttgta cttgccgcgg ttgttgtact
     1621 ggcgggtgag ttcctgggtg acgcggtcca ggctgaggcg gtcgaaggtc tcgccctccg
     1681 agaggccgat gtcctgcagg cccttggtca ggtcctcggt cttgatgtcc ttgttgccgg
     1741 tcagcgtcag cttgttgatc gccgggcgct cgctgacggt cacgaccagg atgtcgccct
     1801 ggcggccgac gcgcacgtcg tcgaagaagc cggtcttgta gagcgcgcgg atcgcctcgg
     1861 cgatgcgcgc ctggtcgacg ctgtcgccgc gctcgatcgg caggtaggtg aacacggtgc
     1921 cggcggaaat gcgctgcagg ccgtcgacgc ggatgtcact gacggtgaag gcgccggcgt
     1981 cggccgccgg ctgcgatgcg cccccgagcg agaaggggtt ggccgactgc gcctgggcgg
     2041 ggaggaccgg ggccagggcc gcggcgaggg cgacggccag caggcggcgg gtgggggttc
     2101 gcgtcatctt caagtccggt tgggaagcgg cccatcgcga cggcgatggc gcgacggggt
     2161 tgctagcgca ccaaatgcag gatgtcgttg tagaacgcca ggcccatcag gccggcgagg
     2221 agcgccaggc cgatgtactg gccgacggcc atcgcgcgtt cgctcaacgg gctgcccttg
     2281 gccagctcga taaggtagta caacaggtgt ccgccgtcca agacggggat cggcagcagg
     2341 ttcatgatcg ccagcgtcag cgagagcagg gcgaggaagt tgaggaacca ggccggtccg
     2401 agctgcgcgg acgcgttcgc gtagcgggcg atggtgatcg gccccgagac gttggcgacc
     2461 gaggcgtggc cggtgagcag gcggccgatc atcgccagcg aatcgctggc gagcttccag
     2521 gtctcgtgca gcgcggcggg gacggcggcg accgggccgt agcggagcgt ggcgtcgtag
     2581 ggcggctgcc gggcgggggc gggctcgatg ccgaggaccc aacgcgcacc ctgggcctcg
     2641 cgctgcaggc gcggcgtggt ttccagcgcc aggcgctcgc cgtcgcgccg cacctcgacc
     2701 atgacccgct ggccgcccac ccgctgcagc agcgggccga tgtcctcgaa cgcgacgacc
     2761 ggcgcgccgt cgaccgcggt gatccggtcg cgctcggcca gcacgcccca ggccggcgtg
     2821 cccggcgcga ccttgcccac gaccggcggc agcagccggg agcgcgggac caggccgatc
     2881 gcgtcgagcg cgcgcgactc gtcgaacccc gccggcaggc gcgagagcgc cagcgtccgg
     2941 gtcgcgtgcc cgccgtcggc ggcgcgcacc gagagcgcca cgtcgcggcg gtccatggcc
     3001 gcgccggcca gggcgaccgc cgcctcgctc caggtcggcg tggcgcggtc gccgaccgcg
     3061 agcagggtgt cgccccggtg caggcccgcc tgcatcgcga tgccttcggt cgcgcccacc
     3121 accggtgcgt agtccggccg gccgaccacg aacatcgccc acaggagcgc cacgcacagc
     3181 agcaggttgg cgagcgggcc cgccgcgacg atcgcgatgc gctggcccac cggcctgcgg
     3241 ttgaaggccc ggtcgacctc gtcgggcgcg acgtcgccct cgcgctcgtc gagcatgcgc
     3301 acgtagcccc cgagcgggat cgcggcgatc gcgtattcgg tgccgtcctt gccgcggtgc
     3361 agccacagcg gcctgccgaa gccgaccgag aagcgcagca cgcgcacgcc gttgcggcgc
     3421 gccatccaga agtggccgaa ctcgtggaag gtcaccagca cgccgaggct gacgatcatc
     3481 caccagacgg aaccaagaaa agtgctcatg cagcggccgg cggcgggtag gcggggaagg
     3541 acaacggaac ggcgcgcggg ttcacgcgcc ggcggcgacc gcgtgcgcca cgtgggcgcg
     3601 cgcggcggcg tcggcggcgc gcagcgcctc gagcgaggac tcgcccgagg gcagcgcggc
     3661 cagtgcattg tcgaccagcg cggggatgtc gaggaagccg atccggccgt ccaggaaggc
     3721 ggcgaccgcg atttcgttgg cggcgttcag gatcgcgggc gcggtgccgc cggcgtcgag
     3781 cgccgcatag gccaggcgca ggcaggggaa ggcgtcgagg tcgggcggct cgaagtcgag
     3841 gcggccgtgc tgcagcaggt ccagcccggc gacgcccgag gcgatccggt ccggccagcc
     3901 gaatccgacc gccagcgccg tgcgcatgtc gggcaggccg agctgcgcca gggtcgagcc
     3961 gtcgacgaat tcgaccagcg aatgcacgag gctctgcgga tgcaccagca cgccgatgcg
     4021 cgccgggtcc aggccgaaca ggtggtgcgc ctcgatcacc tcgaggccct tgttcatcag
     4081 cgtggccgag tcgaccgaga tcttgggccc catcgaccac ttgggatgcg ccaccgcctg
     4141 cgcgggggtg acgtcgcgca gcgacgcgcg cgtgcggccg cggaacggac cgccggaagc
     4201 ggtcagcagg atgcgctgca ggccggcgcg cgcggcggcg tcgggcaggc actggaagat
     4261 cgcgttgtgc tcgctgtcga ccggcacgat ggtggcgccc gcctcgcgcg aggcggccat
     4321 cagcagttcg ccggcaagca ccagcgattc cttgttggcg agcagcaggc gcttgccggc
     4381 gcgggccgcg gcgaggg
//
LOCUS       DATIQC010000040         1796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_249283, whole genome shotgun sequence.
ACCESSION   DATIQC010000040 DATIQC010000000
VERSION     DATIQC010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249283"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VLM17_00870"
     CDS             complement(<1..297)
                     /locus_tag="VLM17_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64143.1"
                     /translation="MNIVQRSLAQRVLLLLPTGRDAEITADLLTRDGIPVCVCSDARE
                     LEAQLDAGAGVALVAEETLALEGAHAVLLRALDAQPRWSDLPVLVLTRSGADSVA"
     gene            complement(294..1793)
                     /locus_tag="VLM17_00875"
     CDS             complement(294..1793)
                     /locus_tag="VLM17_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003474597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HSR64144.1"
                     /translation="MTTPAREAPPREEHVSTGIAGLDLILDGGLTADRMYLVEGVPGS
                     GKTTLALQFLREGVARGETVLFVSLSETEEELREVAASHGWALDGIHIHELDAHHARG
                     PEADYTMFHPSEVELGETTRRILDAVERLRPQRVVFDSLAELRLLSGAVLRFRRQVLA
                     LKQYFAGRRSTVLLLDEAAQVAEQGGLHVHTLVHGVISLDQLRPDFGGDRRRLRIGKM
                     RGRNFVSGYHDYKIITGGVCVYPRLIAAQHRREGSMAPMTSGLAPLDALLGGGLDRGT
                     SSLVIGPAGTGKSTLATQFVMAAAERGEPSAVFIFDESQRAFVTRSRGLGFDIDRHID
                     AGLVKVQPIDPAELTPGEFVHAIRAAAEEDGVRVVVIDSLNGYLNAMPGERYMLVQLH
                     ELLNYLGQLGVTTLLIAAQQGLIGQTTNPVDVSYLSDGVVLLRYFEAEGEVRKAISVL
                     KKRTGFHEQSIRELRMGPDGVRLSEPLRQFRGVLTGLPFDEANSAPAPA"
BASE COUNT          262 a          641 c          636 g          257 t
ORIGIN      
        1 cgccacggaa tcggcgccgc tgcgggtgag gacgagcacc ggcaggtcgg accagcgcgg
       61 ctgcgcatcg agcgcgcgca acagcaccgc atgcgcgccc tccagcgcca gcgtttcctc
      121 ggccaccagc gcgacgccgg cgcccgcgtc gagctgcgcc tcgagctcgc gcgcatcgga
      181 gcagacgcac acggggatcc cgtcgcgggt gagcaggtcg gcggtgatct ccgcatcgcg
      241 gccggtcggc agcagcaaca ggacgcgctg ggccaggctc cgctggacga tgttcatgcg
      301 ggcgccggcg cgctgttcgc ctcgtcgaac ggcaagccgg tgagcacgcc gcggaactgg
      361 cgcagcggtt cgctcagccg cacgccgtcc gggcccatgc gcagttcgcg gatcgactgc
      421 tcgtggaagc cggtgcgctt cttcagcaca gagatggcct tgcgtacctc gccttcggcc
      481 tcgaagtagc gcagcagcac caccccgtcg gacaggtagc tcacgtcgac gggattggtg
      541 gtctgcccga tcaggccctg ctgcgcggcg atcagcagcg tggtcacgcc gagctggccc
      601 aggtagttga gcagctcgtg cagctgcacc agcatgtagc gctcgcccgg catcgcgttg
      661 aggtagccgt tgaggctgtc gatgaccacc acccgcacgc cgtcttcctc ggccgccgcg
      721 cggatcgcat gcacgaactc gccgggggtc agctcggcgg gatcgatcgg ctgcaccttc
      781 accagcccgg cgtcgatgtg gcggtcgatg tcgaagccga ggccgcgcga gcgggtgacg
      841 aaggcacgct ggctctcgtc gaagatgaac accgccgaag gctcgccgcg ctcggcggcc
      901 gccatcacga actgcgtcgc caaggtcgac ttgccggtgc ccgcgggacc gatcaccagc
      961 gagctggtgc cgcggtccag gccgccgccg agcagcgcgt ccagcggcgc caggccgctg
     1021 gtcatcggcg ccatcgatcc ttcccggcgg tgctgcgcgg cgatcagccg cgggtacacg
     1081 cacacgccgc cggtgatgat cttgtagtcg tggtagccgc tgacgaagtt gcggccgcgc
     1141 atcttgccga tgcgcaggcg ccggcggtcg ccgccgaaat ccggccgcag ctggtcgagg
     1201 ctgatgacgc catgcaccag ggtgtgcacg tgcaggccgc cctgctcggc gacctgcgcc
     1261 gcctcgtcca gcagcagcac ggtgctccgg cggccggcga aatactgctt gagggcgagc
     1321 acctgccggc ggaagcgcag gaccgcgccg gacagcaggc gcagctccgc gagcgaatcg
     1381 aacaccaccc gctgcggtcg cagccgctcc accgcgtcga ggatgcgccg cgtggtctcg
     1441 cccagctcca cctcggacgg atggaacatc gtgtagtccg cttcgggacc gcgcgcatgg
     1501 tgggcgtcga gctcgtggat gtggatgccg tccagcgccc acccgtgcga ggccgcgact
     1561 tcgcgcagtt cctcttcggt ctccgacagg ctgacgaaca gcaccgtttc gccacgggcg
     1621 acgccttcgc gcaggaactg cagcgccagg gtggtcttgc ccgagcccgg cacgccctcg
     1681 acgaggtaca tccggtcggc cgtcaggccg ccgtccagga tcaggtcgag accggcgatc
     1741 ccggtggata cgtgctcttc ccgcgggggc gcttcgcgcg cgggcgtggt cagtgg
//
LOCUS       DATIQC010000041         1672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_496478, whole genome shotgun sequence.
ACCESSION   DATIQC010000041 DATIQC010000000
VERSION     DATIQC010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496478"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..906)
                     /locus_tag="VLM17_00880"
                     /pseudo
     CDS             complement(1..906)
                     /locus_tag="VLM17_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038140.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
     gene            complement(1034..1627)
                     /gene="ruvA"
                     /locus_tag="VLM17_00885"
     CDS             complement(1034..1627)
                     /gene="ruvA"
                     /locus_tag="VLM17_00885"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011258432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HSR64145.1"
                     /translation="MIGRLKGILVHKQPPWLVVDVHGVGYELEAPMSTFYDLPDVGRE
                     VALFTHYAQKEDSVSLYGFLREAERRLFRDVQKVSGIGAKIALAVLSGVSVEEFARLV
                     QAGDVTALTRIPGIGKKTAERMVVELRDRAADLAGSALGAPGGIGAAADPQSEAAIAL
                     QQLGYKPAEAARMAREATAAGDDAAAIIRKALKSALR"
BASE COUNT          271 a          588 c          571 g          242 t
ORIGIN      
        1 caccgaatac gcgccggtga tgaccgcctg cgaggcgatc accgccgccg cggtggccag
       61 cccgatcatc gggtagctcg cccacttcgg cacgcccagg tagaacggat tggcgatcgc
      121 ggtcgggtcg tgcagcacca gcgcgccctg gcccaggtag ttgagcatca gcgccggcag
      181 cacgaaccag taccaggcga agcggatcgg ccgtgcgccg aagtggccca tgtccgcgta
      241 cagcgcctcg ccgccggtca ccgccagcac cacggcgccg aggatgaaga tcgaatgcgc
      301 gccgtgggtg gcgaagaagc gcaccgccca caacggactc aacgcgtgca gcaccatcgg
      361 gttgtgcagg atgttgtaga ccccgatcgc cgcgagcgac acgaaccaca cgcacatcac
      421 cggcccgaac accttgccca cctgctcggt gccgtggcgc tgggtgaaga acaacaacac
      481 cagcaccgcc agcgtgatcg gcacgatcca gctgccgagg tgcggcgcga ccacgcccag
      541 gccttcgatc gccgagagcg tggtgatcgc cggcgtgatc acgccgtcgc cgaagaacag
      601 cgaggcgccg aagatgccga ggatgccgac cgcgtacgcc gagcgcgagc ctttcggcag
      661 cgtgcgctgg gccagggcca tcagcgccat gatgccgcct tcgccctcgt tgtcggcgcg
      721 catgatgatg gtgacgtact tgagcgtcac cacgatcatc agcgcccaga acaccagcga
      781 cagcacgccg agcaccgtcg ggtggtccgg cgtcaggccg tagtgcggga tgaaggcttc
      841 cttgatggtg tacagcgggc tggtgccgat gtcgccgaac accacgccga tcgcgccgac
      901 gatgagcccg ccgaggccga cgttgccgtg gccgttgccg tgcgcgttgt tgccgtgcgc
      961 gttgttgccg ggggcgtggg gattgccggg ggtggccatg ggcctgcctg gaaggaaaaa
     1021 aaggatcgac ggttcagcgg agcgcggact ttagcgcctt gcggatgatg gccgcggcgt
     1081 cgtcgccggc ggcggtggcc tcgcgcgcca tgcgcgcggc ctcggcgggc ttgtagccga
     1141 gctgctgcag ggcgatcgcc gcttccgatt gcggatcggc cgccgcgccg atcccgcccg
     1201 gcgcgcccag cgcactgccg gcaaggtccg ccgcgcggtc gcgcagctcg accaccatgc
     1261 gctcggcggt cttcttgccg atgccgggga tgcgggtgag cgcggtgacg tcgcctgcct
     1321 gcaccagccg cgcgaactcc tcgacgctca cgcccgacag caccgccagc gcgatcttcg
     1381 cgccgatgcc gctgaccttc tgcacgtcgc ggaacagccg ccgctcggcc tcgcgcagga
     1441 agccgtacag cgacacgctg tcctccttct gcgcgtaatg ggtgaacaac gccacttcgc
     1501 ggcccacgtc cggcaggtcg tagaaggtac tcatcggcgc ctcgagctcg tagccgacgc
     1561 cgtgcacgtc gaccacgagc cacggcggct gcttgtgcac caggatgccc ttcaaacggc
     1621 cgatcatgcg gctgctcctg cgtttcgcgc cttcccccgc gtgcgggaga ag
//
LOCUS       DATIQC010000042         3877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_355347, whole genome shotgun sequence.
ACCESSION   DATIQC010000042 DATIQC010000000
VERSION     DATIQC010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355347"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2154)
                     /gene="mrcB"
                     /locus_tag="VLM17_00890"
     CDS             complement(<1..2154)
                     /gene="mrcB"
                     /locus_tag="VLM17_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HSR64146.1"
                     /translation="MARIDYDEDAPDERPAHPWRRRLLTWGLAAIGLGLGFLVPYTLY
                     LNHQVGERFGQLRWQIPTRVYARPLQLQPDLAMDNATLKTELDAAAYRDDGAGQRPGT
                     YARSGGRWRIASRGFHDVDGVVGPSRIEVTLSDGRVDAVRDLARQRALKTARLDPARI
                     ATLYGQKQEERRLVRIEEVPELLVTGLQAVEDRDFAHHHGIDVSGMLRAAFVNLKSGA
                     TRQGASTITQQLARSGLLGIGQEQTFSRKFKEILYALLLEARYDKKTILETYLNQVYL
                     GQRGSQEIRGVSAGAEYWFGRDLRDLSTEQVALLVGIIRGPSYYDPRRNPERATERRN
                     FALAKFHETGLIGDAEYARAVKAPLNITSAPGSLAANRFPAYVDLVRRQLARDYPADA
                     LQGAGLSVMTAMSPAAQAYAEGAVTKTFKALDSKKRPPLQAGLIVTDVHDGEVRAVVG
                     SRSFAEPGFNRAVEAKRPVGSLLKPFVYLLALAQPGKWSLASWVDDSPLTITLDNGRR
                     WTPGNAEGHSHGTVRLIDALAHSWNIATVRVGMQVGPERLVELIHVLAGIDATANPSL
                     ILGAVDQSPYAMAQLYQFLASDGEIQPLHAVRGVLDASGNAVNRYDTAPAPAQEGDAI
                     AARLITTALQQAIVGGTGRQLVADGLGRLNPAGKTGTSNDARDSWFAGWTGDHLAVVW
                     VGNDQNESTGLYGAAGGMRVWSNLFARLPSAPLQLS"
     gene            2320..>3877
                     /locus_tag="VLM17_00895"
     CDS             2320..>3877
                     /locus_tag="VLM17_00895"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR64147.1"
                     /translation="MPLSLADARFLCIRAMGLARRGWLSLRTRGWRGSWERVKVQLRP
                     PPARRRPALFKPGQASFAPFALATSETPVASIVIPVFNQFAHTLACLRALAAHLPAAP
                     FEVIAVDDGSSDATVDALPQVAGLRYHRRARNGGFIAACNDGARLARGDILVFLNNDT
                     VPQPGWLDALLATFEAHPDAGVVGAQLLYPDGRLQEAGGVVFGDGGAWNYGRFGSPQD
                     PRYGYLREADYASGAAIAVPRALFERLGGFAERYAPAYYEDTDLAFAARAAGRRVLYQ
                     PAARVVHDEGATSGTDTGSGPKAYQVRNRERFAARWRDALGAQLPPGTVPTPALLHRR
                     QRQVLVIDALTPQPDRDSGSLRLVNLLRLLREHGAHVAFLPADRAHDGRYTEALQQLG
                     VEAWYAPFARSAPAWLAEHGARFERVLVARHYVAGEFLPLLRRHAPRARLLFDSIDLH
                     YLRERRAAELAGDAALLRAAMRTRERELAVVAQADTTLVVSEAERELLARDAPGARVE
                     VLSNLHQVAGP"
BASE COUNT          467 a         1387 c         1469 g          554 t
ORIGIN      
        1 cgacagctgc agcggcgcgc tcggcaggcg cgcgaacagg ttggaccaca cgcgcatgcc
       61 gccggccgcg ccgtacaggc cggtcgattc gttctggtcg ttgccgaccc acaccaccgc
      121 gaggtggtcg ccggtccagc cggcgaacca gctgtcgcgc gcgtcgttgc tggtgccggt
      181 cttgcccgcc gggttgagcc ggccgaggcc gtcggcgacc agctggcggc cggtgccgcc
      241 gacgatcgcc tgctgcagcg cggtggtgat caggcgcgcg gcgatcgcat cgccttcctg
      301 cgccggcgcg ggcgcggtgt cgtagcggtt gaccgcgttg ccgctggcgt cgagcacgcc
      361 gcgcaccgcg tgcagcggct ggatctcgcc atcggaggcg aggaactggt agagctgcgc
      421 catcgcgtac gggctctggt cgaccgcgcc gaggatcagc gacgggttcg cggtcgcatc
      481 gatgccggcg agcacgtgga tcagctcgac gaggcgctcc ggcccgacct gcatgcccac
      541 gcgcacggtg gcgatgttcc aggaatgcgc gagcgcgtcg atcaggcgca cggtgccgtg
      601 gctgtggccc tcggcgttgc cgggcgtcca gcggcggccg ttgtcgaggg tgatggtcag
      661 cggcgaatcg tccacccagc tcgccagcga ccacttgccc ggctgcgcca gcgcgagcag
      721 gtagacgaag ggcttgagca gcgagccgac cggacgcttg gcctcgaccg cgcggttgaa
      781 cccgggctcg gcgaagctgc ggctgccgac caccgcgcgc acctccccgt cgtgcacgtc
      841 ggtgacgatc aggccggcct gcagcggcgg gcgcttcttc gaatcgagcg ccttgaacgt
      901 cttcgtcacc gcgccctcgg cgtaggcctg ggcggccggc gacatcgccg tcatcaccga
      961 caggcccgcg ccctgcagcg cgtcggccgg gtagtcgcgc gccagctggc ggcgcacgag
     1021 gtcgacgtag gcggggaagc ggttggcggc gaggctgccc ggcgcgctgg tgatgttgag
     1081 cggcgccttg accgcgcgcg cgtattcggc gtcgccgatc agcccggtct cgtggaactt
     1141 ggccagcgcg aagttgcggc gctcggtggc gcgctccggg ttgcggcgcg ggtcgtagta
     1201 ggacgggccc cggatgatgc cgaccagcag cgcgacctgc tcggtcgaca ggtcgcgcag
     1261 gtcgcggccg aaccagtact cggcgccggc ggagactccg cggatttcct gcgagccgcg
     1321 ctggccgagg tagacctggt tgaggtaggt ctcgaggatc gtcttcttgt cgtagcgcgc
     1381 ctccagcagc agcgcgtaca ggatttcctt gaacttgcgg ctgaaggtct gttcctggcc
     1441 gatcccgagc aggccgctgc gcgcgagctg ctgggtgatc gtgctggcgc cctggcgcgt
     1501 cgcgccggac ttcaggttga cgaacgcggc gcgcagcatg cccgacacgt cgatgccgtg
     1561 gtggtgggcg aagtcgcggt cctccaccgc ctgcaggccg gtgaccagca gctcgggcac
     1621 ttcctcgatg cggacgaggc gacgctcctc ctgcttctgt ccgtagaggg tggcgatgcg
     1681 cgcgggatcc agtcgcgccg tcttcagcgc gcgctggcgc gcgaggtcgc gcacggcgtc
     1741 gacccggccg tcggacagcg tgacctcgat gcggctcggg ccgaccacgc cgtcgacgtc
     1801 gtggaagccg cggctggcga tgcgccagcg gccgccgctg cgcgcatagg taccgggccg
     1861 ctggccggcg ccgtcgtcgc ggtacgcggc ggcatccagt tcggtcttca gcgtcgcatt
     1921 gtccatcgcg aggtccggct gcagctgcag cgggcgcgca tagacgcggg tcgggatctg
     1981 ccagcgcagc tggccgaagc gctcgccgac ctggtggttg aggtagagcg tgtacgggac
     2041 gaggaaaccg aggccgaggc cgatcgcggc gagcccccag gtcagcaggc gccggcgcca
     2101 gggatgcgcg gggcgctcgt cgggcgcgtc ttcgtcgtag tcgatgcggg ccatgcaggt
     2161 cgtcgtggtg gcgggccgcc ggcgtcgcgc cgacgggcgc attcgggatg cgacaatgca
     2221 ggcgcgtgcc ggggagccgc gagtctagcg caccctccac gcgggccgtg gcggctgccg
     2281 acggaccttg ccgccccagt cagccggagt tccgtcgcga tgccgttgtc cctggccgat
     2341 gcgcgtttcc tctgcatccg cgcgatgggc ctcgcccgcc gcggctggct gagcctgcgc
     2401 acgcgcggct ggcgcggcag ctgggaacgg gtgaaggtgc agttgcggcc gccgcccgcg
     2461 cggcggcggc cggcgttgtt caagcccggg caggcgtcgt tcgcgccctt cgcgctggcg
     2521 acgtcggaaa caccggtcgc gagcatcgtg atcccggtgt tcaaccagtt cgcgcacacg
     2581 ctggcctgcc tgcgcgccct cgccgcgcac ctcccggcgg cgccgttcga ggtgatcgcc
     2641 gtcgacgacg gctcgagcga cgcgaccgtc gatgcgctgc cgcaggtcgc cggcctgcgc
     2701 taccaccggc gcgcgcggaa tggcggcttc atcgccgcct gcaacgacgg cgcgcggctg
     2761 gcgcgcggcg acatcctcgt cttcctcaac aacgacaccg tgccgcagcc gggctggctg
     2821 gacgccctgc tggcgacctt cgaggcgcac ccggacgccg gcgtcgtcgg cgcgcaactg
     2881 ctgtacccgg acggacgcct gcaggaagcc ggcggcgtgg tgttcggcga cggcggcgcc
     2941 tggaactacg ggcgcttcgg ttccccgcag gacccgcgct atggctacct gcgcgaggcc
     3001 gactacgcca gcggcgcggc gatcgcggtg ccgcgggcgc tgttcgaacg gctcggcggc
     3061 ttcgccgagc gctacgcgcc ggcctactac gaggacaccg acctggcgtt cgccgcgcgc
     3121 gcggccggcc ggcgcgtgct ctaccagccg gccgcgcgcg tcgtccacga cgagggcgcg
     3181 acctccggca ccgacaccgg cagcggcccc aaggcctacc aggtccgcaa ccgcgaacgg
     3241 ttcgcggcgc gctggcgcga cgcgctcggc gcgcagctgc cgcccggcac ggtcccgacg
     3301 ccggcgctgc tccaccgccg gcagcggcag gtgctggtca tcgatgcgct caccccccag
     3361 cccgatcgcg actccggttc gctgcggctg gtgaacctgc tccggctgct gcgcgaacac
     3421 ggcgcgcatg tggccttcct ccccgccgac cgcgcccacg acggccgtta caccgaggcg
     3481 ctgcagcagc tcggcgtgga agcgtggtac gcgccgttcg cgcggagcgc gccggcgtgg
     3541 ctggccgagc acggggcacg cttcgagcgc gtgctggtcg cgcgccatta cgtcgccggc
     3601 gaattcctgc cgctgctgcg ccggcacgcg ccgcgcgcgc ggttgctgtt cgacagcatc
     3661 gacctgcatt acctgcgcga gcggcgcgcg gcggaactgg ccggcgatgc ggcgttgctg
     3721 cgcgcggcga tgcgcacgcg ggagcgcgag ctggcggtgg tggcgcaggc cgacacgacc
     3781 ctcgtcgtca gcgaggccga gcgcgagctg ctcgcgcggg acgcccccgg ggcgcgggtg
     3841 gaggtgctgt ccaacctgca ccaggtcgcc gggcccg
//
LOCUS       DATIQC010000043         3769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_2157, whole genome shotgun sequence.
ACCESSION   DATIQC010000043 DATIQC010000000
VERSION     DATIQC010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3769
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2157"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..864)
                     /gene="dnaQ"
                     /locus_tag="VLM17_00900"
     CDS             complement(127..864)
                     /gene="dnaQ"
                     /locus_tag="VLM17_00900"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005990084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HSR64148.1"
                     /translation="MRQIVLDTETTGLSWDKGNRVVEIGCVELVERRPTGRTFHRYLN
                     PEREFEPGAQEVTGLTLEFLADKPKFAEVVDEFLLFIDGAELVIHNAAFDLGFLDAEL
                     SRCGPHLGRMRERCGVEDSLELARQRYPGQRNSLDALCRRLGVDNAHRQLHGALLDAQ
                     LLAEVYLALTSGQGEIGFGSAADAAPATALVFEGAAHAPRPLVLVGAEELASHEARLA
                     VLRRKAGRAVWDAMREAEESGAVLEPA"
     gene            complement(1020..1475)
                     /gene="rnhA"
                     /locus_tag="VLM17_00905"
     CDS             complement(1020..1475)
                     /gene="rnhA"
                     /locus_tag="VLM17_00905"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006450176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HSR64149.1"
                     /translation="MKQVEAHTDGACLGNPGPGGWAALLRWRGQERELVGSEAQTTNN
                     RMELMGAISALEALREPCEVMLQTDSQYVRQGITEWMPNWVRRNWRTAAGEPVKNRDL
                     WERLHAATLRHRIEWRWVKGHSGDPDNERVDELSRNAAFAVKQRMALEG"
     gene            complement(1484..2134)
                     /locus_tag="VLM17_00910"
     CDS             complement(1484..2134)
                     /locus_tag="VLM17_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64150.1"
                     /translation="MPPRIAPGQPARASAWFASAAGQAVLASEAEAIRTAVAERPGQP
                     WLWLTVGAAGAEPAERGLLLRASREGWRGPVRCALPLPLANESVATVVVQHAAGGRRG
                     GDLLDECARVLVPGGRLWLFALNPLSPYQLRWLGSRVGAAEPTLWRRRLRAAGLSPDP
                     VSHGLGPRWRVGVDPVPDTGPGLRAAWMLRAEKRSAPLTPLRTRPAPRLGEGVPAA"
     gene            2190..2951
                     /gene="gloB"
                     /locus_tag="VLM17_00915"
     CDS             2190..2951
                     /gene="gloB"
                     /locus_tag="VLM17_00915"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HSR64151.1"
                     /translation="MQLQALPAFADNYIWTLADGAGAVVVDPGEAAPVFAAADAGLRP
                     TLLLLTHHHPDHIGGAARLLDRWPTLPVFAPADPRIHLAFTPVYEGTPIDSGPWRFQA
                     MAVPGHTTSHVAFVGHGHLFCGDTLFSLGCGRLFEGTPAQMLDSLDRLAALPGDTRVC
                     CGHEYTLANAAFARVVDPDNPALRRRTEDATAMRHANRPTLPSTIEDERAANPFLRVD
                     APAVRAAVSAHLGRVPADRVETFAELRRWKDGFVA"
     gene            2948..>3769
                     /locus_tag="VLM17_00920"
     CDS             2948..>3769
                     /locus_tag="VLM17_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HSR64152.1"
                     /translation="MSRRGAGWVLLCALCWPAVRAAEPGGPSLLPQAAEPPAAVRSGR
                     EIYQRFQDGLADPHCDDAGNPRWRAHFAAAPARLTGTDDQTLALFGYVVDALRAASLP
                     TEYALIPFVESGYRPGARSAAGPAGLWQMIAITARNHDVTVRPGYDGRLSPVESTTAA
                     VRYLKTLHGMFAGDWRLAVMAYNTGEYRVLDALRRSGQQAAHADPARLPGMPQVTRDY
                     LRKLHALSCLLDQADDRHDWLQAVDHPVPLLQAVALPASARTLDGWAERSGRDPVL"
BASE COUNT          475 a         1482 c         1313 g          499 t
ORIGIN      
        1 tggtggccgc ggcgctggac ggcggcggct cggacaacgt gacggtggtg ctggtccgac
       61 ggcactaggc ggctcgcccg cgatccggac ccgcgagccg cgggctctgg ttgcgtccgg
      121 cgcaggctac gccggttcca gcacggcccc gctttcctcg gcctcgcgca tcgcatccca
      181 caccgcgcgc ccggccttcc tgcgcagcac cgccaggcgc gcctcgtggc tcgccagttc
      241 ctcggccccg accaggacca gcgggcgcgg cgcgtgggcc gcgccttcga agaccagcgc
      301 cgtcgccggc gcggcatcgg ccgcgctgcc gaagccgatc tcgccctggc ccgaggtcag
      361 cgcgaggtag acctccgcca gcagttgcgc gtcgagcagc gcaccgtgca gctggcgatg
      421 ggcgttgtcg acgccgaggc gccggcacag cgcgtccagc gagttgcgct ggccgggata
      481 acgctggcgc gcgagttcga gcgaatcctc gacaccgcag cgttcgcgca tgcgtcccag
      541 gtgggggccg cagcgcgaga gctcggcgtc gaggaagccg aggtcgaagg ccgcgttgtg
      601 gatgaccagc tcggcgccgt cgatgaagag gaggaactcg tcgacgacct cggcgaactt
      661 cggcttgtcg gcgaggaatt ccagggtcag cccggtgact tcctgcgcgc ccggctcgaa
      721 ctcacgctcc ggattgaggt agcggtggaa ggtgcggccg gtcggccggc gctcgaccag
      781 ttcgacgcag ccgatttcga ccacgcggtt gcccttgtcc caggacaggc cggtggtttc
      841 ggtatcgagg acgatctggc gcatcgggct cgcgtcggcg gggaaacggg ggcggggaag
      901 gaccgccggc ggcccgccgc ttccccgcgc ggcgcgcaca gtgtggcatc cggcgggcgg
      961 ctcgcccacc acgcgttcat cgatcgcccg catcgatcac gcacgccgcc gcgacgcgat
     1021 cacccttcca gcgccatccg ttgcttgacc gcgaaagcgg cgttgcgcga aagctcgtcc
     1081 acgcgctcgt tgtccggatc gccgctgtgg cccttgaccc agcgccattc gatgcggtgg
     1141 cgcagggtgg cggcatgcag gcgttcccac aggtcgcggt tcttgaccgg ttcgcctgcg
     1201 gcggtgcgcc agttgcggcg cacccagttc ggcatccact cggtgatgcc ctggcggacg
     1261 tactgggaat cggtctgcag catcacctcg cagggctcgc gcagcgcctc gagcgccgag
     1321 atcgcgccca tcagctccat gcggttgttg gtggtctgcg cctcgcttcc gaccagctcc
     1381 cgctcctgcc cgcgccagcg cagcaacgcc gcccagccgc ccggccccgg attgccgagg
     1441 caggccccgt cggtatgcgc ctccacctgc ttcatcgtcg cgctcatgcg gccgggacgc
     1501 cttcgcccag ccgcggcgcc gggcgcgtgc gcagcggcgt cagcggcgcg ctgcgcttct
     1561 ccgcgcgcag catccacgcc gcgcgcaggc cgggtccggt gtccggcacc ggatcgacgc
     1621 ccacccgcca gcgcgggccg agcccgtgcg agaccggatc cggactgagg ccggccgcgc
     1681 gcagtcgcct gcgccacagg gtgggctcgg ccgcccccac ccggctgccg agccagcgca
     1741 gctggtacgg cgacaggggg ttgagcgcga acagccacag ccgtccgccc ggcaccagca
     1801 cgcgggcgca ctcgtcgagc aggtcgccgc cccgccgccc gccggcggcg tgctggacga
     1861 ccaccgtcgc caccgattcg ttggccagcg gcagcggcag cgcgcagcgg accgggccgc
     1921 gccagccctc gcggctggcc cgcaggagca ggccgcgttc tgccggttcc gcccccgccg
     1981 cgcccaccgt cagccacagc cagggttgcc cgggacgctc ggcgacggcc gtgcggatcg
     2041 cctccgcctc gctcgccagc accgcctgcc cggccgccga ggcgaaccag gcactggcgc
     2101 gggcgggttg accgggggcg atacggggcg gcatggtcgg cattctagcg gcccgatccc
     2161 ccggaccgcc gccgttccag ggaccgggaa tgcaactgca ggcgctaccg gccttcgccg
     2221 acaactacat ctggacgctg gccgacggcg ccggcgcagt ggtggtcgat ccgggcgagg
     2281 ccgcgccggt gttcgccgcc gccgatgcgg gcctgcgccc gaccctgctg ctcctcaccc
     2341 accaccaccc ggaccacatc ggcggagccg cccgcctgct ggaccgctgg ccgaccctgc
     2401 cggtgttcgc cccggccgac ccgcgcatcc acctggcctt cacgccggtt tacgaaggca
     2461 cgcccataga ctccggccct tggcggttcc aggccatggc cgtgccggga cacaccacca
     2521 gccacgtcgc cttcgtcggc catggccacc tgttctgcgg cgacaccctc ttcagcctcg
     2581 gctgcggccg gctgttcgaa ggcacgccgg cgcagatgct ggactcgctc gaccgcctgg
     2641 ccgcattgcc gggcgacacc cgcgtctgtt gcggacacga atacaccctg gccaacgccg
     2701 cgttcgcgcg cgtggtcgat cccgacaatc cggccctgcg ccgacgcacc gaggacgcga
     2761 ccgccatgcg ccacgcgaac cgccccaccc tgccctcgac catcgaggac gagcgcgccg
     2821 ccaacccctt cctgcgggtg gatgcgcccg ccgtgcgcgc cgccgtctcc gcccacctcg
     2881 gccgcgtccc cgccgatcgc gtggaaacgt tcgccgaatt gcggcgctgg aaggacgggt
     2941 tcgtcgcatg agccggcgcg gcgccgggtg ggtgctgctg tgcgcgctgt gctggcccgc
     3001 cgtccgggcc gccgaaccgg gtggcccgtc gctcctcccg caggccgccg aaccgcccgc
     3061 ggcggtgcgc agcgggcgcg agatctacca gcgtttccaa gacgggctcg ccgacccgca
     3121 ctgcgacgat gccggcaacc cgcgctggcg cgcccatttc gccgccgcgc ccgcgcggct
     3181 caccggcacc gacgaccaga cgctggcgtt gttcggctac gtggtcgacg ccctgcgcgc
     3241 ggccagcctg ccgaccgagt acgcgctgat ccccttcgtc gaaagcggct accgtcccgg
     3301 cgcgcgcagc gccgccggtc cggccggcct ctggcagatg atcgccatca ccgcgcgcaa
     3361 ccacgacgtc accgtgcgcc ccggttacga cggccgcctg tcgccggtgg agtcgaccac
     3421 ggcggcagtg cgctacctga agaccctgca cggcatgttc gccggcgact ggcggctggc
     3481 ggtgatggcc tacaacaccg gcgagtaccg cgtgctcgac gcattgcgcc gcagcgggca
     3541 gcaggcggcg cacgccgacc ccgcgcggct gcccggcatg ccccaggtca cccgcgacta
     3601 cctgcgcaag ctgcacgcgc tgtcctgcct gctcgaccag gccgacgacc gccacgactg
     3661 gctccaggcg gtggaccacc cggtgccgct gctgcaggcg gtcgccctgc cggcctcggc
     3721 gcgcaccctg gatggctggg ccgagcgcag cgggcgcgac ccggtgctc
//
LOCUS       DATIQC010000044         4100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_285068, whole genome shotgun sequence.
ACCESSION   DATIQC010000044 DATIQC010000000
VERSION     DATIQC010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285068"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VLM17_00925"
     CDS             complement(<1..276)
                     /locus_tag="VLM17_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HSR64153.1"
                     /translation="MQDRELLARLIAGPASGDALAEASGQTRAAIWKRIDALRAAGVA
                     IEARAGRGYALAQPLELLEADAIRATVPAREQAELRALDIAWTTDSTN"
     gene            411..692
                     /locus_tag="VLM17_00930"
     CDS             411..692
                     /locus_tag="VLM17_00930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64154.1"
                     /translation="MTRLASCLLLLCLAAGAQARDIRMHGPNGDGGGSCSDESSTPLA
                     NLLPAKAAPAAPLHRAGKPKAPTALRSGGGDDVGMHAPRWHSFLPGMFR"
     gene            717..1457
                     /locus_tag="VLM17_00935"
     CDS             717..1457
                     /locus_tag="VLM17_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003469287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M90 family metallopeptidase"
                     /protein_id="HSR64155.1"
                     /translation="MLRRLRRGPLEIDPASWQRVVAATPWCRALDPARQQRLLALATR
                     FLDRKAITPVGDLELDDFQRLQLAALCCLPLLEFGAEGLRGWSQLLVYPDAFRVGRTH
                     VDAAGVLHEWDDELIGEAWEQGPVILSWADIEADLAEPDAGYCVAVHEIAHKLDVLDG
                     VLDGTPPLPAAWQRQWAADFQQAYDALARDVDRGRRTLVDAYAAEAPEEFFAVCSEYH
                     FSDPRTLGRAMPKVAAHLRKFYGPAPFA"
     gene            complement(1480..2895)
                     /locus_tag="VLM17_00940"
     CDS             complement(1480..2895)
                     /locus_tag="VLM17_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSR64156.1"
                     /translation="MAADRDPLFRWRPRSLQSRQLWAASIGLVAFLALAGYALDRAFL
                     QTAESNLHERLRSDALAYADGIEFLRDGSLYVPDTPPDPRLKRPGSGLYAEVVLPNGH
                     WNSSSAQGPLLPEGTMLRPTQERFEGPLPITRSNGEPGEIYRYGLGLVWAEGGADAEF
                     PYTIYVMEDASTLPAQVRVFRQALWGYLGGAGLVLLLLQSLVLRWSLQPLRKVIAELK
                     RVQRGQLARMSAEHPRELEPLTESINAFIESERENLDRQRNTLADLAHSLKTPLAVLR
                     ARLDNRAPEGELREELDVQLRRMNEMVGYQLARAASSGHKLFAAPIRIEGHAEEIVRG
                     LEKIYASKGVLCEFEIEEGACFHGEPGDLQELLGNLLENAFKWARSRVLLTAKAGECS
                     AQRRPGLLLVVEDDGPGIPPDQVGALLQRGVRGDERVQGHGIGLAIVQDIVRGYRGEL
                     GVGRSEELGGARFQVQLPPGL"
     gene            complement(3055..3738)
                     /locus_tag="VLM17_00945"
     CDS             complement(3055..3738)
                     /locus_tag="VLM17_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017917079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64157.1"
                     /translation="MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVP
                     FDVGIIDLGLPKMSGMELIRALRDEGKQFPVLILTARSSWQDKVEGLKQGADDYLVKP
                     FHVEELLARINALVRRAAGWSKPTLECGPVMLDLAAQTVSVNGQNVDLTSYEYKVLEY
                     LMMHAGELVSKADLTEHIYQQDFDRDSNVLEVFIGRLRKKLDPDGTLKPIETVRGRGY
                     RFAIPRSGE"
     gene            complement(3791..4099)
                     /locus_tag="VLM17_00950"
     CDS             complement(3791..4099)
                     /locus_tag="VLM17_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64158.1"
                     /translation="MLLSAPLLGGTAAWAGPPRGRPAAPPAPPRADDPLSDSVRRIER
                     TTRGQVLSAERVPFDGRNINRIKIVDERGRVRVYMDDPQTPPTQSPDPRDPPTRGDDD
                     "
BASE COUNT          539 a         1480 c         1473 g          608 t
ORIGIN      
        1 attggtcgag tcggtcgtcc aggcgatgtc gagtgcgcgg agttcggcct gctcgcgggc
       61 cggcaccgtg gcgcggatgg catcggcttc gagcagttcg agcggctgcg cgagggcata
      121 gccgcggccc gcgcgcgcct cgatggcgac gccggccgcg cgcagggcgt cgatccgctt
      181 ccagatcgcc gcccgggtct gtccgctggc ctcggccagg gcatcgccgc tggcggggcc
      241 ggcgatcagg cgggcgagca gttcacggtc ctgcatgggc gcgggcatcg ggcgatcggc
      301 gggaaactgt gcccgtattg tgcattgcgg atgcaaccgg acccgccccc ggcgcatcca
      361 cgctatagtt cgctgtcgcc gtccggcccc cgggcccaag gatcgccgcc atgacccgcc
      421 tcgcctcctg cctcctgctg ctgtgcctcg ccgccggcgc gcaggcgcgc gacatccgca
      481 tgcacgggcc gaacggcgac ggtggcggca gctgcagcga cgagtccagc acgccgctgg
      541 ccaacctcct cccggccaag gcggcgccgg ccgcgccgct gcaccgtgcc ggcaagccga
      601 aggcgccgac cgcgctgcgc agcggcggcg gcgacgacgt cggcatgcac gcgccgcgct
      661 ggcacagctt cctgccgggc atgttccgct agggacgtcg cgcggccgtg ctgggcctgc
      721 tccgccggct acgccgcggc cccctcgaaa tcgatcccgc gtcgtggcag cgcgtcgtcg
      781 cggcgacgcc ctggtgccgc gcgctcgatc ccgcacgcca gcagcgcctg ctggcgctcg
      841 ccacgcggtt cctcgaccgc aaggcgatca ccccggtcgg cgacctcgaa ctcgacgact
      901 tccagcgcct gcagctggcc gcgctgtgct gcctgccgct gctggaattc ggcgccgaag
      961 gcctgcgcgg ctggtcgcag ctgctggtgt acccggatgc cttccgcgtc ggccgcaccc
     1021 acgtcgacgc cgccggcgtc ctgcacgaat gggacgatga actgatcggc gaggcatggg
     1081 agcaggggcc ggtgatcctg tcctgggccg acatcgaggc cgacctcgcc gaaccggacg
     1141 ccggctactg cgtggcggtg cacgagatcg cgcacaagct cgacgtgctc gacggcgtgc
     1201 tcgacggcac gccgccgctg ccggcggcgt ggcaacgaca gtgggcggcc gatttccagc
     1261 aggcctacga cgcgctcgcc cgcgacgtcg accgcggccg gcgcacgctg gtggacgcct
     1321 acgccgccga ggcgccggag gaattcttcg ccgtgtgcag cgaataccac ttcagcgatc
     1381 cgcgcacgct cgggcgcgcg atgccgaagg tggcggcgca cctgcggaag ttctacgggc
     1441 cggcgccgtt cgcctgaggc ccttcggcgc gaaggtgcgt cacagccccg gcggcagctg
     1501 cacctggaag cgcgcgccgc ccagttcctc cgaacggccg acgccgagct cgccgcggta
     1561 gccgcgcacg atgtcctgca cgatggccag gccgatgccg tggccctgca cgcgctcgtc
     1621 tccgcgcacg ccgcgctgca gcagcgcgcc gacctggtcg ggcgggatgc cggggccgtc
     1681 gtcctccacc accagcagca ggccgggccg ccgctgcgcg ctgcactcgc ctgccttcgc
     1741 ggtcagcagc acgcgtgatc tggcccactt gaacgcgttc tcgagcaggt tgccgagcag
     1801 ctcctgcagg tcgccgggct cgccgtggaa gcaggcgcct tcctcgatct cgaattcgca
     1861 cagcacgccc ttgctggcgt agatcttctc cagcccgcgc acgatctcct cggcgtggcc
     1921 ttcgatccgg atcggcgcgg cgaacagctt gtggccgctc gaggccgcgc gcgcgagctg
     1981 gtagccgacc atctcgttca tgcgccgcag ctgcacgtcg agttcctcgc gcagctcgcc
     2041 ttccggggcg cggttgtcga ggcgcgcgcg caacaccgcc agcggcgtct tcagcgaatg
     2101 ggcgaggtcg gcgagcgtgt tgcgctggcg gtcgaggttc tcgcgctcgc tctcgatgaa
     2161 ggcgttgatg ctttcggtga gcggctcgag ttcgcgcggg tgctccgcgc tcatgcgcgc
     2221 gagctggccg cgctgcacgc gcttgagttc ggcgatgacc ttgcgcagcg gttgcaggct
     2281 ccagcgcagc accagcgact gcaacagcag cagtaccagc ccggcgccgc cgaggtagcc
     2341 ccacagcgcc tggcggaaca cgcgcacctg cgccggcagc gtgctcgcgt cctccatcac
     2401 gtagatggtg tacgggaatt cggcgtccgc gccaccttcg gcccagacca ggccgaggcc
     2461 gtagcggtag atctcgcccg gctcgccgtt gctgcgggtg atcggcagcg gaccctcgaa
     2521 gcgctcctgg gtcggccgca gcatcgtgcc ctcgggcagc agcgggccct gcgcggacga
     2581 ggaattccag tgcccgttcg gcagcacgac ctcggcgtac aggccgctgc ccgggcgctt
     2641 caggcgcggg tcggggggcg tgtccggcac gtacaggctg ccgtcgcgca ggaactcgat
     2701 gccgtccgca taggcgagcg cgtcgctgcg caggcgctcg tgcaggttgc tctcggcggt
     2761 ctgcaggaag gcgcggtcga gcgcgtagcc ggcgagcgcg aggaacgcca ccaggccgat
     2821 gctggccgcc cacagctgcc gcgactgcag cgaacgcggg cgccagcgga acaggggatc
     2881 gcggtcagcg gccatgtgcg gggaggatgc ctgaaaacac gccggacgaa ccctggccgg
     2941 accccgtgcc cgggggccgc gccgccggcc gccgcgatgg cgcaaacgat gatgccggcg
     3001 gcctgggcgc accggcatcg acgaacccgg aggaacggat cccgaccgcc gcggtcactc
     3061 gccgctgcgc gggatcgcga agcggtagcc gcggccgcgc acggtctcga tcggcttgag
     3121 cgtgccgtcc ggatcgagct tcttgcgcag gcggccgatg aacacttcca gcacgttgga
     3181 gtcgcggtcg aagtcctgct ggtagatgtg ctcggtgagg tcggccttcg acaccagttc
     3241 gccggcatgc atcatcaggt actcgagcac cttgtactcg tagctggtga ggtcgacgtt
     3301 ctggccgttg acgctgaccg tctgcgcggc gaggtccagc atcaccgggc cgcattcgag
     3361 cgtgggcttg ctccagccgg cggcgcggcg caccagcgcg ttgatgcgcg ccagcagctc
     3421 ctcgacgtgg aagggcttga ccaggtagtc gtcggcgccc tgcttcaggc cctcgacctt
     3481 gtcctgccag ctcgagcgcg cggtgaggat cagcaccggg aactgcttgc cctcgtcgcg
     3541 cagcgcgcgg atcagttcca tgcccgacat cttcggcagg ccgaggtcga tgatgccgac
     3601 gtcgaacggc acctcgcggc ccatgtacag gccttcctcg ccatcctgcg cggcatcgac
     3661 cgcgaagcct tcgcgtttca ggcgggcggc gagggtctcg cgcagcgggg cttcgtcttc
     3721 gacgagcagg atacgcatcg ttcactccgg aaccagggcc ttcccggcct cttggctgaa
     3781 gggtgcctat tcagtcgtcg tcgccgcgtg taggtggatc gcgcggatcg ggcgactgcg
     3841 ttggcggggt ctgcggatcg tccatgtaga cccggacgcg accgcgctcg tcgacaatct
     3901 taatccggtt gatgttgcgg ccgtcgaacg gcacgcgttc cgcgctcagc acctgcccgc
     3961 gggtggtgcg ctcgatccgg cgcacgctgt ccgacagcgg atcgtcggcg cgcgggggcg
     4021 cgggcggcgc cgccggccgc ccgcgcggcg gcccggccca cgcggcggtg ccgcccagga
     4081 gcggggcgga cagcagcatc
//
LOCUS       DATIQC010000045         1697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_249763, whole genome shotgun sequence.
ACCESSION   DATIQC010000045 DATIQC010000000
VERSION     DATIQC010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249763"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /locus_tag="VLM17_00955"
     CDS             <1..1097
                     /locus_tag="VLM17_00955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HSR64159.1"
                     /translation="IVHAGGDASGARIVEALTLQARAASHITWRGGLDVRALLMRGEA
                     VCGVLARGADGHGEDIGASAVVLATGGIGALFARTSNPAGADGAGLALALAAGAAVRD
                     LEFMQFHPTALDVPGRSLPLLTEALRGAGATLHDHTGRALMAGVHPLADLAPRDIVAR
                     RVWQAGRRGRVWLDARDIADIGRRFPTVVAACAAHGLDPRAALLPVAPAAHFHMGGVA
                     VDADGASSVPGLHVVGEAACNGVHGANRLASNSLLEGIACGRRLGAWLARHAAVATSG
                     GTVRPRTLGGPLPPPLLGRVRALLWNAAGPLREGAELRAAHAACLAMQEEGWQARIAA
                     ALLEAALRRGHSLGAHYRLDAAGGAVRRVS"
     gene            1166..1681
                     /gene="fabA"
                     /locus_tag="VLM17_00960"
     CDS             1166..1681
                     /gene="fabA"
                     /locus_tag="VLM17_00960"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017914959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     FabA"
                     /protein_id="HSR64160.1"
                     /translation="MTRPVSLDTSQLLACAQGALFGPGNARLPAPPMLMFDRITRIDE
                     HGGSHGKGLLVAELDIRPDLWFFACHFEGDPVMPGCLGLDAMWQLAGFYLPWLGEPGR
                     GRALGVGEVKFTGQVLPDAKCVRYEIDVKRVLRGKLKLVIADGRTFVDDRLIYEARDL
                     RVGLFQSTEAL"
BASE COUNT          191 a          629 c          640 g          237 t
ORIGIN      
        1 gcatcgtgca cgcgggcggc gacgccagcg gcgcgcgcat cgtcgaggca ctgacgctgc
       61 aagcacgggc ggcctcccac atcacctggc gcggcggcct ggacgtgcgc gccctgctca
      121 tgcgcggcga ggcggtgtgc ggggtgctcg cgcgcggcgc cgacggccac ggcgaggaca
      181 tcggtgcctc cgcggtggtc ctcgcgaccg gcggcatcgg cgcgctgttc gcgcgcacca
      241 gcaacccggc cggcgcggac ggcgcgggcc tcgcgctggc gctcgccgcg ggcgcggcgg
      301 tgcgcgacct cgaattcatg cagttccacc cgaccgcgct cgacgtgccc ggccgcagcc
      361 tgccgctgct gaccgaggcg ctgcgcggcg cgggcgcgac cctgcacgac cacaccgggc
      421 gcgcgttgat ggccggcgtg catccgctcg ccgacctcgc cccccgcgac atcgtcgcgc
      481 gccgcgtctg gcaggccggc cggcgcgggc gcgtgtggct ggatgcccgc gacatcgccg
      541 acatcggccg gcgctttccc acggtcgtcg ccgcctgcgc ggcgcacggg ctggacccgc
      601 gcgctgcgct gctgccggtc gcaccggcgg cgcacttcca catgggcggc gtggcggtgg
      661 acgccgatgg cgccagttcg gtgccgggcc tgcacgtggt cggcgaagcg gcgtgcaacg
      721 gcgtgcatgg cgccaaccgg ctggcgagca attcgctgct cgaagggatc gcctgcggac
      781 gacggctcgg cgcgtggctg gcgcgccacg cggcggtggc gacctccggc gggaccgtac
      841 gcccgcgcac gttgggcggc ccgctgccgc cgccgctgct gggccgcgtg cgcgccctgc
      901 tgtggaacgc cgccggcccg ctgcgcgagg gggccgagct gcgcgcggcg catgcggcgt
      961 gcctggcgat gcaggaggaa ggctggcagg cgcggatcgc cgcggcgctg ctcgaagcgg
     1021 ccttgcggcg cggccacagc ctcggcgccc attaccggct ggacgcggcg ggaggcgcgg
     1081 tgcgccgggt ttcttgattc ccgtcagcac gcccatcgcg cggggcatga cacacttcgc
     1141 cctttccccc gcacggttcc actgcatgac gcgtccggtt tccctcgaca cctcccagtt
     1201 gctggcctgc gcgcagggcg cgctgttcgg tcccggcaac gcacgcctgc cggcgccgcc
     1261 gatgctgatg ttcgaccgaa tcacccgcat cgacgagcac ggcggcagcc acggcaaggg
     1321 cttgctggtc gccgagctcg acatccgccc cgacctctgg ttcttcgcct gccacttcga
     1381 gggcgacccg gtgatgccgg gctgcctcgg cctcgacgcg atgtggcagc tcgccggctt
     1441 ctacctgccg tggctgggtg aacccggccg cggccgcgcg ctcggcgtgg gcgaggtgaa
     1501 gttcaccggc caggtgctgc cggatgcgaa gtgcgtgcgc tacgagatcg acgtcaagcg
     1561 cgtgctgcgc ggcaagctca agctcgtcat cgccgacggc cgcaccttcg tcgacgaccg
     1621 gttgatctac gaagcgagag acttgcgcgt gggattgttc cagtcgacgg aggcgctgtg
     1681 atgtcgacgc gacgcgt
//
LOCUS       DATIQC010000046         4211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_461805, whole genome shotgun sequence.
ACCESSION   DATIQC010000046 DATIQC010000000
VERSION     DATIQC010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461805"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..375)
                     /locus_tag="VLM17_00965"
     CDS             complement(<1..375)
                     /locus_tag="VLM17_00965"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSR64161.1"
                     /translation="MPARRFAKPLRYALAGAVVLALVAVLLWPRAQQVDTAPVTRGRV
                     ASVVTASGTLSPLVTVQVGSQVSGRVQWLGADFNSAVRKGQVIARIDPSLVQSALEQA
                     RANEAAAIAAVQGAEATVADARR"
     gene            complement(380..2737)
                     /locus_tag="VLM17_00970"
     CDS             complement(380..2737)
                     /locus_tag="VLM17_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR64162.1"
                     /translation="MSVLHRKLLREYAQLRGQAIAIALVLIGGIATMVMAMGNHHALA
                     DTRATFYREYRFADVFASVRRAPLPLLARVRALPGVARAQARVVGMVSLEVPGFDEAV
                     TAQVVSLPRPGDADLDALYLRRGALPAADDEAVVAEAFADAHGLQPGDRLTAILHGRR
                     QAVRISGVGLSPEFIYQIRPGEAFPDFARFGVLWMRPRPLARAFDLDGAFNDLTLTLA
                     PQAREADVIDAVDTLLAPYGGTGARGRALQTSHRYLDEELRQLAVMTRLFSTIFLAVA
                     AFLLNVVVGRLVDAQREQVAVLEAFGYSRREVALHYFQLVLLLVGTGLLPGIAFGAWM
                     GREIAGIYMRFFRFPFLSWSLPPLVLALAIGFSLAVAALGTLGGLRRIWALTPAQAMR
                     PEAPALYRRSLAERIGLARLLDPSARMVLRTLERRPLRTLLSIAGIGLACGMLVMSGS
                     QRHAIDAMIAVQFGLAQRDDLTVSFVEPTSARAAQELAALPGVRAVEPFRFAAVRLHH
                     GHRSYQTALQGLPGESDLRRVLDRDLHPVALPADGVLLTDYLAGMLDVRPGDRIAIEF
                     LEGDRRTLTVPVAGTVHEYLGVGAYARRATVNRLLGEGGAVSGAWLSVDPAARGAVLA
                     ALRARPRVAAVADRAATIRSFRESMAESVDIFTFAATLLAGGMVVGVVYNAARITLAE
                     RGRDFASLRVLGYTRAEVRGLLLGELAVLAFLALPLGFACGQGLTALLVLGFQSELYR
                     VPLAVAPAGQAFAGLVVLAATLLSALLVRRRLDRLDLVAVLKTRE"
     gene            complement(2734..3489)
                     /locus_tag="VLM17_00975"
     CDS             complement(2734..3489)
                     /locus_tag="VLM17_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007514889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR64163.1"
                     /translation="MWPADAPRAAGDPAAAAAEPVFRARGLTKVYRMGEVEVPALRGV
                     DLDLHAGEFVVLLGASGSGKSTLLNILGGLDAPTSGEVVCRGHPLTGSDADALTRFRR
                     EHVGFVFQFYNLIPSLTARENVALVTEIAAAPMTPEQALAMVGLEARLDHFPAQLSGG
                     EQQRVAIARAIAKRPDVLLCDEPTGALDSATGVRVLQALERTNRTTGALTVVITHNAV
                     IADMADRVIFLSDGRIAREQRNPARAPAAGLRW"
     gene            complement(3544..>4211)
                     /locus_tag="VLM17_00980"
     CDS             complement(3544..>4211)
                     /locus_tag="VLM17_00980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA hydrolase/transferase C-terminal
                     domain-containing protein"
                     /protein_id="HSR64164.1"
                     /translation="GYRELTAYTEVIQDGMLQLLRDGVLRMASATSFSLSPDGIAEFN
                     RNVDFYRGRIVLRPQEISNHPELIRRLGCIAMNGMIEADLYGHVNSTHIAGSRIMNGI
                     GGSGDFARNGYLSVFMSPSTAKDGAVSAIVPMASHVDHTEHDVMVLVTEQGLADLRGL
                     SPKQRARQVIAHCAHPDYRPLLQDYFDRACRDGHGRHSPHLLGEALSWHQRYLDTGSM
                     RPG"
BASE COUNT          611 a         1523 c         1585 g          492 t
ORIGIN      
        1 ccgccgcgcg tccgcgaccg tcgcctccgc tccctggacg gccgcgatgg cggcggcctc
       61 gttcgcgcgc gcctgctcga gcgcggactg gacgaggctc gggtctatcc gggcgatcac
      121 ctggcccttc ctgaccgccg agttgaagtc ggcgccgagc cactggacgc ggcccgacac
      181 ctggctgccc acctggacgg tgacgagcgg ggagagcgtc ccgctcgcgg tcacgacgga
      241 ggcgacgcgg ccgcgcgtca ccggcgcggt atcgacctgc tgcgcgcgcg gccacagcag
      301 taccgcgacg agcgcgagca ccaccgcgcc ggccagcgcg tagcgcaggg gtttcgcgaa
      361 gcggcgtgcg ggcatgcggt cactcccggg tcttgagcac ggcgacgagg tcgagccggt
      421 cgagccggcg ccgcaccagc agcgccgaca gcagcgtcgc cgccagcacc accagcccgg
      481 cgaacgcctg cccggccggc gccaccgcca gcggcacacg gtacaactcc gactggaagc
      541 cgagcaccag cagcgcggtc aggccctggc cgcaggcgaa gcccagcggc agggcgagga
      601 aggcgagcac cgccagctcg ccgagcagca ggccgcgcac ctcggcgcgg gtgtagccga
      661 gcacgcgcag gctggcgaaa tcgcggccgc gttcggcgag ggtgatgcgc gcggcgttgt
      721 agacgacgcc gaccaccatg ccgccggcca gcagggtggc ggcgaaggtg aagatgtcga
      781 cgctctcggc catgctctcg cggaagctgc ggatggtcgc ggcgcgatcg gcgaccgccg
      841 ccacccgcgg gcgcgcgcgc agcgccgcca gcacggcgcc gcgcgcggcc ggatccaccg
      901 acagccacgc gcccgagacc gcgccgcctt cgccgagcag gcggttgacg gtggcgcgcc
      961 gcgcgtaggc gccgacgccg aggtattcgt gcacggtgcc cgccaccggc accgtgagcg
     1021 tgcgccggtc gccttcgagg aattcgatgg cgatgcggtc gccggggcgc acgtccagca
     1081 tcccggcgag gtagtcggtg aggagcacgc cgtccgcggg caaggccacc ggatgcaggt
     1141 cgcgatcgag cacgcggcgc aggtcggatt ccccgggcag gccctgcagg gcggtctggt
     1201 agctgcggtg gccgtggtgc agccgcaccg cggcgaagcg gaacggctcg accgcgcgca
     1261 ccccgggcag cgcggcgagt tcctgcgcgg cgcgcgccga ggttggttcg acgaagctca
     1321 cggtgaggtc gtcgcgctgc gcgagcccga actgcaccgc gatcatcgcg tcgatggcgt
     1381 gccgctgcga gcccgacatc accagcatcc cgcatgccag gccgatgccg gcgatcgaca
     1441 gcagcgtccg cagcgggcgc cgctcgagcg tgcgcagcac catgcgcgcg gacggatcga
     1501 gcaggcgcgc caggccgatg cgctcggcca gcgaacggcg atacagcgcc ggcgcctccg
     1561 gacgcatcgc ctgcgccggg gtcagggccc agatgcggcg caacccgccg agcgtgccca
     1621 gcgccgccac cgccagcgaa aagccgatcg ccagcgccag caccagcggc ggcagcgacc
     1681 agctgaggaa ggggaagcgg aagaagcgca tgtagatgcc ggcgatctcg cggcccatcc
     1741 acgcgccgaa cgcgatcccc ggcagcaggc cggtgccgac cagcagcagc accagctgga
     1801 agtagtgcag cgcgacctcg cgacggctgt agccgaaggc ctccagcacc gcgacctgct
     1861 cgcgctgggc gtcgaccagg cggccgacca ccacgttgag caggaaggcc gccacggcga
     1921 ggaagatcgt ggagaacagc cgcgtcatca ccgcgagctg gcgcagctcc tcgtcgaggt
     1981 agcggtgcga ggtctgcagc gcgcggccgc gcgcgccggt gccgccgtag ggcgccagca
     2041 gcgtgtcgac ggcatcgatc acgtcggcct cgcgcgcctg cggggccagg gtcagggtca
     2101 ggtcgttgaa ggcgccgtcg aggtcgaacg cgcgcgccag cggccgcggc cgcatccaca
     2161 gcacgccgaa gcgggcgaag tccgggaagg cttcgcccgg gcggatctgg tagatgaatt
     2221 ccggcgacag gccgacgccg ctgatccgca ccgcctgccg gcgtccgtgc aggatcgcgg
     2281 tgaggcggtc gccgggctgc aggccgtgcg cgtcggcgaa ggcctcggcc accaccgctt
     2341 cgtcgtcggc ggccggcagc gcgccgcggc gcaggtacag cgcgtcgagg tcggcgtcgc
     2401 ccgggcgcgg cagcgacacc acctgcgccg tcaccgcctc gtcgaagccg ggcacctcca
     2461 ggctgaccat gccgaccacc cgcgcctgcg cccgggccac gccgggcagc gcgcgcaccc
     2521 gcgccagcag cggcagcggc gcgcggcgca cgctggcgaa cacgtcggcg aagcggtatt
     2581 cgcggtagaa ggtggcgcgg gtatcggcga gggcgtggtg gttgcccatc gccatcacca
     2641 tcgtggcgat gccgccgatc agcaccagcg cgatcgcgat cgcctggccg cgcagctgcg
     2701 cgtactcgcg cagcagcttg cggtgcagca cgctcaccag cgcagccccg cggccggcgc
     2761 acgcgccggg ttgcgctgct cgcgcgcgat ccggccgtcg ctgaggaaga tcacccggtc
     2821 ggccatgtcg gcgatcaccg cgttgtgggt gatcaccacg gtgagcgcgc cggtcgtgcg
     2881 gttggtccgt tccagcgcct gcagcacgcg cacgccggtg gccgagtcga gggcgccggt
     2941 cggctcgtcg cacagcagca cgtcggggcg cttggcgatg gcgcgcgcga tcgccacgcg
     3001 ctgctgctcg ccgcccgaca gctgcgccgg gaagtggtcc aggcgcgcct ccagcccgac
     3061 catcgccagc gcctgctccg gcgtcatcgg cgcagcggcg atctcggtga ccagggcgac
     3121 gttctcgcgc gcggtcaggc tcgggatcag gttgtagaac tggaacacga agccgacgtg
     3181 ctcgcggcgg aagcgggtga gcgcatcggc gtctgacccg gtcagcgggt gcccgcggca
     3241 gacgacttcg ccgctggtcg gtgcgtccag cccgccgagg atgttgagca gggtcgactt
     3301 gccgctgccc gaggcgccga gcagcaccac gaactcgccg gcgtggaggt ccaggtcgac
     3361 gccgcgcagc gccggcacct cgacctcgcc catgcggtag accttggtca gcccgcgggc
     3421 gcggaacacc ggctccgccg cggcggcggc ggggtcaccg gcggcgcggg gcgcatcggc
     3481 gggccacatg ggcgcactgt aggcccacgg ccgccggcgc gcatcggccc ggccggccgc
     3541 atctcaaccg ggccgcatcg agccggtgtc gaggtagcgc tggtgccagg acagcgcctc
     3601 gccgagcagg tgcgggctgt gccggccgtg gccgtcgcgg caggcgcggt cgaaatagtc
     3661 ctgcagcagc gggcggtagt cggggtgcgc gcaatgcgcg atgacctggc gcgcgcgctg
     3721 cttcggcgac agcccgcgca ggtcggccag gccctgctcg gtgaccagaa ccatcacgtc
     3781 gtgctcggtg tggtcgacgt ggctggccat cggcacgatc gcggacacag cgccgtcctt
     3841 cgccgtgctc ggcgacatga acaccgacag gtagccgttg cgggcgaagt cgccgctgcc
     3901 gccgatgccg ttcatgatcc ggctgccggc gatgtgggtg gagttgacgt ggccatagag
     3961 gtcggcctcg atcatcccgt tcatcgcgat gcaccccagc cgccggatca attcagggtg
     4021 gttggagatc tcctgcggcc gcagcacgat gcggccgcgg tagaagtcga cgttgcggtt
     4081 gaactcggcg atgccgtcgg ggctgagcga gaacgaggtc gccgacgcca tgcgcagcac
     4141 gccgtcgcgc aacagctgca gcatgccgtc ctggatcacc tcggtgtacg cggtcagctc
     4201 gcggtagccg c
//
LOCUS       DATIQC010000047         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_638589, whole genome shotgun sequence.
ACCESSION   DATIQC010000047 DATIQC010000000
VERSION     DATIQC010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_638589"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..1067)
                     /locus_tag="VLM17_00985"
     CDS             complement(273..1067)
                     /locus_tag="VLM17_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HSR64165.1"
                     /translation="MTDSPSPAPLQVEDRGAIRVIRVHRPDKLNALNSDTLDALHAAF
                     RDAAADDAVRVVVLTGSGPKAFVAGADIAEMNALTPVQGRDFSLRGTRMMRFVEAMPK
                     PVIAMVNGFALGGGLELAMCCHLRIAADSAKVGQPEINLGLIPGFGGTQRLLRLAGRA
                     ATLELCLTGAPIDAARAQQLGILNRVVPAAELEAETMKLAGQLASAAPLALRGILDCV
                     NVGGECAIDEGLGYESAQFGLVFSTRDMREGTAAFLERRKPEFLGR"
     gene            1276..1962
                     /locus_tag="VLM17_00990"
     CDS             1276..1962
                     /locus_tag="VLM17_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase
                     N-terminal domain-containing protein"
                     /protein_id="HSR64166.1"
                     /translation="MKLRLLAAALAALTLTTGAALAQDTNSDKGKLSYALGYQLGRQA
                     AESGEALDVTTMTRALQDGYAKKDPAVPVEQMRTAYEAMQQRLQAKAKAAYDKAAGEN
                     KTKSDAFLAQNKAKTGVKVLPSGVQYRVMETGSGAKPSQASAVDLEVSGPFPWGQHPQ
                     QAQAPQKMTGVKLSGIEMPAMREVLLQMPAGSKWEVALPPEKAYGADPRTGFPPNVAV
                     VFEVKLLSVK"
BASE COUNT          313 a          711 c          746 g          273 t
ORIGIN      
        1 cgaccagcgc gttgcaaccg ggcgcgcagg acgggcaggg cgcgacctcg agcagaccgg
       61 cgtcgagcgc ggagccgagg tcgccttcgc gcagcgcgcc gatcacgacg tggatggacg
      121 cgggcgcggg gcagcggcag gcggggcagg gaagcgcgat catgtcggca actcgattgt
      181 cgttccgggc gggacgggaa gcccgccttt ccgcggcccg atgcgcgccg gaggaaaggc
      241 ggtgacccgc tgcgtccggg ccgaccgcgg gctcagcgtc cgaggaattc cggtttgcgc
      301 cgctccagga atgccgccgt gccctcgcgc atgtcccggg tcgagaacac caggccgaac
      361 tgcgcgcttt cgtagccgag gccttcgtcg atcgcgcact cgccgccgac gttgacgcag
      421 tcgaggatgc cgcgcagggc cagcggcgcg gcgctcgcca gctgcccggc aagtttcatc
      481 gtttcggcct cgagttcggc ggccggcacc acgcggttga ggatgcccag ctgctgcgcg
      541 cgcgcggcgt cgatcggcgc gccggtcagg cacagctcca gggtcgccgc gcgcccggcg
      601 aggcgcagca ggcgctgggt gccgccgaag cccgggatca ggccgaggtt gatctcgggc
      661 tggccgacct tggcgctgtc ggcggcgatg cgcaggtggc agcacatcgc cagttccagc
      721 ccgccgccca gcgcgaagcc gttgaccatc gcgatcaccg gcttgggcat cgcctccacg
      781 aaacgcatca tgcgcgtgcc gcgcagcgag aagtcgcggc cctgtaccgg cgtcagtgcg
      841 ttcatctcgg cgatgtcggc gccggcgacg aaggccttcg ggccactgcc ggtcagcacc
      901 accacgcgca ccgcgtcatc ggcggccgcg tcgcggaacg ccgcgtgcag ggcgtcgagc
      961 gtgtccgaat tcagcgcgtt gagcttgtcc gggcggtgta cgcggatgac gcggatggcg
     1021 ccgcggtcct cgacctgcag cggggcggga gagggtgaat cggtcatgag cggaagtctc
     1081 tgcggcagtg gcgcccgccg gcgttttcgc ggaacttgcc gggcccgggt cggtcggagg
     1141 ggagtcgtca gtggcagtgg tgccctgcgg cccttatcct agcgtgccca tccggccggt
     1201 ccgcggggcg gtgttcgccg ccccgtccgc gtgaccggcc atctggaagc tccctcatcc
     1261 tggaggctgt accgaatgaa gttgcgtctg cttgccgccg ccctcgcggc cctcaccctg
     1321 accacgggcg ccgcgctcgc acaggacacc aactccgaca agggcaagct gagctacgcc
     1381 ctcggttacc agctcggccg ccaggccgcg gaaagtggcg aggcgctcga cgtcacgacc
     1441 atgacccgcg cgctccagga cggctatgcg aagaaggacc ccgccgtgcc ggtcgagcag
     1501 atgcgtaccg cctacgaggc gatgcagcag cgcctgcagg ccaaggccaa ggcggcgtac
     1561 gacaaggccg ccggcgagaa caagaccaag agcgatgcct tcctcgccca gaacaaggcc
     1621 aagaccggcg tcaaggtcct gcccagcggc gtgcagtacc gcgtgatgga aacgggctcg
     1681 ggcgccaagc cgtcccaggc cagcgccgtc gacctggaag tctccgggcc gttcccgtgg
     1741 ggccagcacc cgcagcaggc gcaggcgccg cagaagatga ccggcgtgaa gctcagcggc
     1801 atcgagatgc cggccatgcg cgaagtgctg ctgcagatgc cggccggctc gaagtgggaa
     1861 gtcgccctgc cgccggaaaa ggcctacggc gccgatccgc gcaccgggtt cccgcccaac
     1921 gtggcggtgg tgttcgaggt gaagctcctc agcgtcaagt gacccgacgc ctgtcccgga
     1981 ccgggaagcc ggctcgggac cagggtgcaa ggaacgccgg cccagcgccg gcgttctgct
     2041 ttc
//
LOCUS       DATIQC010000048         3411 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_674014, whole genome shotgun sequence.
ACCESSION   DATIQC010000048 DATIQC010000000
VERSION     DATIQC010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674014"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VLM17_00995"
     CDS             <1..437
                     /locus_tag="VLM17_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR64167.1"
                     /translation="PLDAEATAHGTFFAPAAWELGSLAQLTRENFGPALHVIRWKASE
                     LDQVIAAINATGYGLTLGIHSRIDETIDHIVSRVKVGNSYVNRNQIGAVVGVQPFGGQ
                     GLSGTGPKAGGPHYLPRFATEKTVTINTTAAGGNASLLTLGD"
     gene            complement(513..1877)
                     /locus_tag="VLM17_01000"
     CDS             complement(513..1877)
                     /locus_tag="VLM17_01000"
                     /inference="COORDINATES: protein motif:HMM:NF015316.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpP1/FadL family transporter"
                     /protein_id="HSR64168.1"
                     /translation="MQTRLTQLSALALGIAGVLALGSAHATGFQLRENSVKNLGRANS
                     GTAVASDDASVVVNNPAAMVNLQKATFQADATDIDLTAHFHGGGYADAGTPLQNPLTG
                     GDGGDPGSPKVVPAVAFVMPVADNFRLGASISAPFGLNTEYDADWVGRYNAINSDVKT
                     VDLTLSAAWAITPQFSVGLGAIYQRSEVTLSNAIDFGSALCAGSGNPLNCLNPAFPFH
                     PQGNDGTVVVKGDANDWGWVAGAQWRVTDSFVLGYSHHSKISHTLRGSADFTLPASVA
                     ATFGALGVTAYNDGAIYAPLTTPSIDTLSAQWNVAPAWRLYADYQRTGWHSLQQVAIF
                     RDGGAPLGPAEAFNWKNTNYFGIGAEWDVSPAFTLRAGLAHDQTPTRDDTRDARLPDN
                     NRQLYSIGVTWHASDAFSIDAAFQRINIKTPTVDIITSSGSSLTGDFDGHANLFGLSM
                     QYRF"
     gene            2165..2860
                     /locus_tag="VLM17_01005"
     CDS             2165..2860
                     /locus_tag="VLM17_01005"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR64169.1"
                     /translation="MFVALPNRSRPGLRWATPLLFALLWLAYFWASTQSDATRAHLVL
                     DWGALTGGPPLAADTWRGLWSDGRGLRLLTALFLHADWAHLLGNLAFLLIFGLPAERV
                     MGAWRFLLLFLLGGAFANLAAVLAIGAPDRLIIGASGAISAVIGAYLALFPRARLGVV
                     LPLGLFLEFVRAPASLLIGIWVLLQVVFAYIGPAFGAVAWAAHVAGFVFGVLFALLVR
                     AAIARRLRKRRGY"
     gene            2910..3227
                     /locus_tag="VLM17_01010"
     CDS             2910..3227
                     /locus_tag="VLM17_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006452242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1820 family protein"
                     /protein_id="HSR64170.1"
                     /translation="MKTLYKVTFLNHGKVYELYAQRVGSSSLWGFTEVADLVFDVHAG
                     VVVDPAEERLRDEFAGTRVLHLPMQSIVRVEEVDKKGQSAIRDAATGETVVTPFPFPA
                     KPR"
     gene            complement(3264..3411)
                     /locus_tag="VLM17_01015"
                     /pseudo
     CDS             complement(3264..3411)
                     /locus_tag="VLM17_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155962.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase S41"
BASE COUNT          435 a         1162 c         1257 g          557 t
ORIGIN      
        1 cgccgctgga cgcggaggcg accgcgcacg gcaccttctt cgccccggcg gcgtgggagc
       61 tcggttcgct cgcgcagctg acccgcgaga acttcggccc ggcgctgcac gtgatccgct
      121 ggaaggccag cgagctcgac caggtgatcg ccgcgatcaa cgccaccggc tacgggctga
      181 cgctcggcat ccattcgcgc atcgacgaga ccatcgacca catcgtctcg cgggtgaagg
      241 tcggcaattc ctacgtcaac cgcaaccaga tcggcgcggt ggtcggcgtg cagccgttcg
      301 gcggccaggg cctgtcgggc accggcccga aggcgggcgg cccgcactac ctgccgcgct
      361 tcgcgacgga gaagacggtg acgatcaaca ccaccgccgc cggcggcaat gcctcgctgc
      421 taacgctggg cgactgatcc gcggccggcg cagcgcccga aaaaaagccc cgccggagcg
      481 gggctttttc gttgcgcgga tcgcggctgc gatcagaagc ggtactgcat cgacaggccg
      541 aacaggttgg cgtggccgtc gaaatcgccg gtcaggctgg aaccgctcga ggtgatgatg
      601 tcgaccgtcg gggtcttgat gttgatgcgc tggaacgcgg catcgatgct gaaggcatcg
      661 ctggcatgcc aggtgacgcc gatcgagtac agctggcggt tgttgtccgg caggcgcgcg
      721 tcgcgggtgt cgtcgcgggt cggggtctgg tcgtgggcga ggcccgcgcg cagggtgaat
      781 gccgggctca cgtcccactc ggccccgatg ccgaagtagt tggtgttctt ccagttgaac
      841 gcctcggccg gaccgagcgg cgcgccgcca tcgcggaaga tcgccacctg ctgcagcgaa
      901 tgccagccgg tgcgctggta gtcggcgtac aggcgccacg cgggggcgac gttccactgc
      961 gcgctcagcg tgtcgatcga cggcgtggtc agcggtgcgt agatcgcgcc atcgttgtac
     1021 gcggtcacgc ccagcgcacc gaaggtcgcg gcgacgctgg ccggcagggt gaagtcggcg
     1081 ctgccgcgca gggtgtggct gatcttcgag tggtgcgagt agccgagcac gaagctgtcg
     1141 gtcacccgcc actgcgcgcc ggcgacccag ccccagtcgt tggcgtcgcc cttgaccacg
     1201 acggtgccgt cgttgccctg cggatggaac gggaaggccg ggttgaggca gttgagcggg
     1261 ttgccggaac cggcgcacag cgcgctgccg aaatcgatcg cgttggacag cgtcacttcg
     1321 ctgcgctggt agatcgcgcc gaggccgacc gagaactgcg gggtgatcgc ccacgccgcc
     1381 gacagggtca ggtcgaccgt cttcacgtcg gagttgatcg cgttgtagcg gccgacccag
     1441 tcggcgtcgt attcggtatt caggccgaac ggcgcgctga tcgaggcgcc gaggcggaag
     1501 ttgtcggcca ccggcatcac gaaggccacc gccggcacca ccttcggcga gccggggtcg
     1561 ccgccgtcgc cgccggtcag cgggttctgc agcggggtgc ccgcgtcggc gtagccgccg
     1621 ccgtggaagt gcgcggtcag gtcgatgtcg gtggcgtcgg cctggaaggt cgccttctgc
     1681 aggttgacca tcgcggccgg gttgttgacg acgaccgagg cgtcgtcgct ggcgacggcg
     1741 gtgccgctgt tggcgcggcc gaggttcttg acgctgtttt cgcgcagctg gaagcccgtg
     1801 gcatgggccg agccgagcgc cagcacgccg gcaatgccga gcgcgagggc ggacagttgg
     1861 gtaaggcggg tctgcattgc tctctccggt gacggtcttg ctgttgttgg tatgggtggc
     1921 ggccgatcgt cgggcccgcg cggggcgggc gctgccggaa gtccccctcc cgacatacga
     1981 cgccgtatgc actatatcgc gggatttaac cccccggtaa caatcgaccg gcggccggcc
     2041 aacccgggat gcggctgccc atgccgtggc tggagacacg cccgcgccgg caccgccgat
     2101 gcgggcgggc ggcgcgagaa cgtccgccgc gttaaggtgc ccgccggatc ctcgcgcccg
     2161 cgccatgttc gtcgccctgc ccaaccgctc ccggcccggc ctgcgctggg ccacgccgct
     2221 gctgttcgcg ctgctgtggc tcgcctactt ctgggcgagc acgcagtcgg acgcgacccg
     2281 cgcccacctc gtgctcgact ggggcgcgct caccggcggg ccgccgctgg ccgccgacac
     2341 ctggcgcggc ctgtggagcg acgggcgtgg cctgcgcctg ctgaccgcgc tgttcctgca
     2401 cgccgactgg gcgcacctgc tcggcaacct cgccttcctg ctgatcttcg gcctgccggc
     2461 ggaacgggtg atgggggcgt ggcgcttcct gctgctgttc ctgctcggcg gcgccttcgc
     2521 caacctcgcc gcggtgctgg cgatcggcgc gccggaccgg ctgatcatcg gcgcgagcgg
     2581 cgcgatctcg gcggtgatcg gcgcctacct tgcgctgttc ccgcgcgccc ggctcggggt
     2641 ggtgctgccg ctcgggctgt tcctcgaatt cgtgcgcgcg ccggcgtcgc tgctgatcgg
     2701 catctgggtg ctgctgcagg tggtgttcgc ctacatcggc ccggcgttcg gcgcggtggc
     2761 gtgggcggcg cacgtggccg gcttcgtgtt cggcgtgctg ttcgcgctgc tcgtgcgtgc
     2821 ggcgatcgcg cggcggctgc gcaagcggcg cgggtattga gcggcggctg ttgaccggaa
     2881 ccttccccgg ccccggctag actgcgcgca tgaagacgct ctacaaggtc accttcctca
     2941 accacggcaa ggtctacgag ctctacgcgc agcgcgtggg gtccagcagc ctgtggggct
     3001 tcaccgaggt cgccgacctc gtgttcgacg tgcacgccgg cgtggtggtc gacccggccg
     3061 aggaacgcct gcgcgacgag ttcgccggca cccgcgtgct gcacctgccg atgcagagca
     3121 tcgtgcgggt ggaggaagtc gacaagaagg gccagtccgc catccgcgac gccgccaccg
     3181 gcgagacggt agtgacgccg tttccgtttc cggcgaagcc gcgctagcgc gcggcgcacc
     3241 gttcagccct tgcctttcgg tttcgccggc gccggcgcgg cgccggccgg ttgcttcttc
     3301 agttcggcca gcgccgcggc gatcggtgca tcgccgtcga gcacctcgcc cgcgttgctg
     3361 ccggcctcct cgaggtcgcc gtgcaggtgg ccgggcagca gcgactcggc g
//
LOCUS       DATIQC010000049         4076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_568252, whole genome shotgun sequence.
ACCESSION   DATIQC010000049 DATIQC010000000
VERSION     DATIQC010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568252"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VLM17_01020"
     CDS             complement(<1..627)
                     /locus_tag="VLM17_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64171.1"
                     /translation="MAARLTPAFSVPEAIRRPLLHMSMLTVAMVAGVAMAFLTQTLLA
                     RELGPASYGLFASSLVTVTMLAPLAGFGLTQFRLKVYGVEGWGAHRWMQPSLRFTVFT
                     TLLAIGLVVGWALIAAPANGTRFCLLVLTPVILSVLASDLVGNKLRLEDRYRYMALWQ
                     LMLPASRLAVAIVLFWATGLDYHFVAVAYAVVALLVTARALPHLRAMLR"
     gene            complement(692..2602)
                     /gene="cysN"
                     /locus_tag="VLM17_01025"
     CDS             complement(692..2602)
                     /gene="cysN"
                     /locus_tag="VLM17_01025"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007809325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HSR64172.1"
                     /translation="MATLMDANAQAADARAQVAAYLLQHETRDLLRFITCGSVDDGKS
                     TLIGRLLHDTRLLLDDQLAALEADSRRHGTQNGEIDFALLVDGLAAEREQGITIDVAY
                     RFFGTEKRKFIVADCPGHEQYTRNMATGASTADLAVVLVDARKGLLTQTRRHSYIVSL
                     LGIRHVLLAVNKMDLVGYDQGVFDAIVEGYGALATQLGIPQVTAIPVSALKGDNMLAP
                     SARTPWYQGPTLLAHLETVQVARAAREVGLRLPVQWVCRPDQDFRGFAGTIAAGSATP
                     GMEVAVLPSGRRSRIARIVTADGDLDRAQAGQAVTLTLADEVDVSRGDVIADAHAPPE
                     VADQFAAHVLWLGEQPLLPGRPYWLRIGTRTVGAQVTEIKHRVDVNTQEPRAAKLLEL
                     NEVGVCNLYLDQPVAFEAYADNRALGGFILIDRQSNATVAAGTLDFALRRAANIHWQH
                     LEVDRAARARIKHQAPRCVWFTGLSGAGKSTIANLVEKRLLALGRHTYLLDGDNVRHG
                     LNKDLGFTDQDRVENIRRVAEVSRLMVDAGLIVLVSFISPFRAERRMARELFGAGEFV
                     EVYVDTPLEVAERRDAKGLYARARQGRIRNFTGIDSPYEVPEQPELVLDTVRETPEAL
                     AERLVAMLLEAR"
     gene            complement(2602..3618)
                     /gene="cysD"
                     /locus_tag="VLM17_01030"
     CDS             complement(2602..3618)
                     /gene="cysD"
                     /locus_tag="VLM17_01030"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009580147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HSR64173.1"
                     /translation="MTPSSNASVRTRASLFRPLTPSLEGAPGACEARAPGAVQASLSN
                     LDRLEAESLHILREVAAEFRNPVMLYSVGKDSSVLLHLLLKAFYPARPPIPLLHVDTT
                     WKFREMIAFRDRRAAETGVELRTWTNPEGLAQGINPISHGATVHTDVMKTQALKQALD
                     HWGFDAAIGGARRDEEKSRAKERIFSFRNAQHRWDPKTQRPELWDLYNTRIHQGESVR
                     VFPISNWTELDVWLYIYREQIPVPSLYFAAERPVVERDGALIMVDDERLPLRAGETPA
                     LRKVRFRTLGCYPLTGAIESEAASLEQIIAEMLVATTSERQGRVIDQDPGATMEKKKQ
                     EGYF"
     gene            complement(3615..>4076)
                     /locus_tag="VLM17_01035"
     CDS             complement(3615..>4076)
                     /locus_tag="VLM17_01035"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase domain-containing protein"
                     /protein_id="HSR64174.1"
                     /translation="EQELALGDRAHWGNCRYYVCASRYAPQVAAYTRLFGTDNLCVLA
                     FERLVAEPAHELQRLFGFLGIDLPGELSLPRENSTRAARFPGLHKGLRDSGLKAMLRG
                     LWQRSAGTGLGRMARSMYYRDKQGVVPEEDLRRVRTLLQAHGMDSYLAEAA"
BASE COUNT          582 a         1474 c         1425 g          595 t
ORIGIN      
        1 ccgcagcatg gcgcgcaggt gcggcaaggc gcgcgcggtc acgagcagcg cgacgaccgc
       61 gtaggccacc gcgacgaagt ggtagtccag cccggtcgcc cagaacagca cgatcgccac
      121 cgccaggcga ctggccggca gcatcagctg ccacagcgcc atgtagcgat accggtcctc
      181 caggcgcagc ttgttgccga cgaggtcgga agccagcacg ctgaggatca ccggcgtcag
      241 caccagcagg cagaagcgcg tcccgttggc cggtgcggcg atgagcgccc agccgaccac
      301 caggccgatc gccagcaggg tggtgaagac ggtgaagcgc agcgaaggct gcatccagcg
      361 atgcgcgccc cacccttcga cgccgtagac cttgagccgg aactgcgtca gcccgaagcc
      421 cgcgagcggc gcgagcatcg tcaccgtcac cagcgaggac gcgaacagtc cgtagctggc
      481 cggaccgagc tcgcgcgcga gcagggtctg ggtgaggaag gccatggcga cgcccgcgac
      541 catcgccacg gtgagcatcg acatgtgcag cagcggccgg cggatcgcct ccggcacgct
      601 gaaggcgggg gtcaggcgcg ctgccatcgt tcgcttccgc atcgccggcc gtcgttccgc
      661 gggaacgcgc gcatgcgcgt cggcgcgcgg ttcaacgcgc ctccagcagc atcgccacca
      721 gccgttccgc gagcgcttcg ggcgtttcgc gcacggtgtc gagcaccagc tcgggctgct
      781 cgggcacctc gtacggcgag tcgatgccgg tgaagttgcg gatccggccc tggcgggcgc
      841 gcgcgtacag gcccttggcg tcgcgccgtt cggccacctc cagcggggtg tcgacgtaga
      901 cctcgacgaa ctcgcccgcg ccgaacagct cgcgcgccat ccgccgctcg gcgcggaacg
      961 gcgagatgaa gctgaccagc acgatcaggc cggcgtcgac catcagccgc gacacctcgg
     1021 ccacccggcg gatgttctcg acccggtcct ggtcggtgaa ccccaggtcc ttgttgagcc
     1081 cgtggcggac gttgtcgccg tccagcaggt aggtgtgccg gcccagcgcc agcagccgct
     1141 tctcgaccag gttggcgatc gtcgacttgc ccgcgcccga cagcccggtg aaccacacgc
     1201 agcgcggcgc ctggtgcttg atccgcgcgc gcgcggcccg gtccacctcc aggtgctgcc
     1261 agtggatgtt ggcggcccgg cgcagcgcga agtccagggt gccggcggcg acggtggcgt
     1321 tgctctggcg gtcgatcagg atgaagccgc ccagcgcgcg gttgtcggcg taggcctcga
     1381 acgcgaccgg ctggtccagg tagaggttgc acaccccgac ctcgttgagc tccagcagct
     1441 tggccgcgcg cggctcctgg gtgttgacgt cgacccggtg cttgatctcg gtgacctgcg
     1501 cgccgaccgt gcgggtgccg atgcgcagcc agtacgggcg ccccggcagc agcggctgct
     1561 cgcccagcca cagcacgtgc gcggcgaact ggtcggcgac ctccggcggg gcgtgcgcgt
     1621 cggcgatcac gtcgccgcgg ctgacgtcga cctcgtcggc cagggtcagc gtcaccgcct
     1681 gcccggcctg ggcgcggtcg aggtcgccgt cggcggtgac gatgcgcgcg atccggctgc
     1741 gccgccccga cggcagcacc gccacctcca tgcccggcgt cgcgctgccc gcggcgatcg
     1801 tgccggcgaa gccgcggaag tcctggtccg gccggcacac ccactgcacc ggcaggcgca
     1861 ggccgacctc gcgcgccgcg cgcgcgacct gcaccgtctc caggtgcgcc agcagggtcg
     1921 gcccctggta ccagggcgtg cgcgccgagg gcgcgagcat gttgtcgccc ttcagcgccg
     1981 acaccgggat cgcggtgacc tgggggatgc ccagctgggt ggcgagcgcg ccgtagcctt
     2041 cgacgatggc gtcgaacacg ccctggtcgt agccgaccag gtccatcttg ttgaccgcca
     2101 gcagcacgtg gcggatgccc agcagcgaca cgatgtagct gtgccggcgg gtctgggtga
     2161 gcaggccctt gcgcgcgtcc accagcacca ccgccaggtc cgcggtggag gcgccggtgg
     2221 ccatgttgcg ggtgtactgc tcgtggcccg ggcagtcggc gacgatgaac ttgcgcttct
     2281 cggtgccgaa gaagcggtac gccacgtcga tggtgatgcc ctgctcgcgc tcggcggcca
     2341 ggccgtcgac cagcagggcg aagtcgatct cgccgttctg ggtgccgtgc cggcggctgt
     2401 cggcctccaa tgccgccagc tggtcgtcca gcagcagccg ggtgtcgtgc agcaggcgcc
     2461 cgatcagcgt gctcttgccg tcgtccacgc tgccgcaggt gatgaagcgc agcaggtcgc
     2521 gggtctcgtg ctgcagcagg taggccgcga cctgcgcgcg cgcatcggcc gcctgcgcat
     2581 tggcatccat cagcgtggcc atcagaagta gccctcctgc ttcttcttct ccatcgtcgc
     2641 gcccgggtcc tggtcgatca cccggccctg ccgctcggag gtcgtcgcca ccagcatctc
     2701 ggcgatgatc tgctccaggc tcgcggcctc cgactcgatc gccccggtca gcggatagca
     2761 gcccagcgtg cggaagcgca ccttccgcag cgccggcgtc tcgcccgcgc gcagcggcag
     2821 gcgctcgtcg tcgaccatga tcagcgcgcc gtcgcgctcc accaccggcc gctccgccgc
     2881 gaagtacagc gacggcaccg ggatctgctc ccggtagatg tacagccaca cgtccagttc
     2941 ggtccagttg gagatcggga acacccgcac cgactcgccc tggtggatgc gcgtgttgta
     3001 caggtcccac agctccgggc gctgggtctt ggggtcccag cggtgctgcg cgttgcggaa
     3061 cgagaagatc cgctccttgg cccgcgactt ctcctcgtcg cggcgcgccc cgccgatcgc
     3121 cgcgtcgaag ccccagtggt ccagcgcctg cttcagcgcc tgggtcttca tcacgtcggt
     3181 gtgcaccgtc gccccgtggc tgatcgggtt gatcccctgc gccagcccct ccgggttggt
     3241 ccaggtgcgc agctccaccc ccgtctccgc cgcccggcgg tcgcggaagg cgatcatctc
     3301 gcggaacttc caggtcgtgt ccacgtgcag cagcgggatc ggcggccgcg ccgggtagaa
     3361 cgccttcagc agcaggtgca gcagcaccga actgtccttg cccaccgaat acagcatcac
     3421 cggattgcgg aactccgccg ccacctcgcg caggatatgc aggctctcgg cttcgaggcg
     3481 gtcgaggttg gaaagcgacg cctgcacggc gccgggggcc cgggcctcgc atgcaccggg
     3541 cgcgccttcg agcgacgggg tcaacggtcg gaacagcgat gcgcgcgtgc gcacgctggc
     3601 gttggaggat ggcgtcatgc ggcctctgcc aggtaggaat ccatgccatg ggcctgcagc
     3661 agggtgcgta cccgccgcag gtcctcttcc ggaacgacac cctgcttgtc ccggtaatac
     3721 atcgaacgcg ccatccggcc gaggcccgtg cccgcgctcc gctgccacaa cccgcgcagc
     3781 atcgccttga ggccggagtc gcgcaggccc ttgtgcaagc cggggaaacg cgccgcgcgc
     3841 gtactgttct cgcgcggcag cgacagctcg ccgggcaggt cgatgccgag gaaaccgaac
     3901 agccgctgca gttcgtgcgc cggctccgcg accagccttt cgaaggccag cacgcacaag
     3961 ttgtcggtgc cgaacaggcg ggtgtaggcc gcgacctgcg gcgcgtagcg gctggcgcag
     4021 acgtagtagc ggcaattccc ccagtgcgcc cggtcgccga gggcgagttc ctgctc
//
LOCUS       DATIQC010000050         2276 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_3244, whole genome shotgun sequence.
ACCESSION   DATIQC010000050 DATIQC010000000
VERSION     DATIQC010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3244"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2276
                     /locus_tag="VLM17_01040"
     CDS             <1..>2276
                     /locus_tag="VLM17_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-1,6-glucosidase domain-containing protein"
                     /protein_id="HSR64175.1"
                     /translation="AGSSRIRLYHSVDGALVAARGAVVRGADDAIALAADTSPLPAAL
                     AERFRFIGAGARLALPAAARARLPALLRGQLVLVREDASGSVLDATALQSPGALDALY
                     PAAARITGFGATPAATATRFRVWAPGARAVSVCVYARGDAPADGLLPLRREDATGAWS
                     VDAPADLRGRYYAYLVDVYARGTGVVRNRVTDPYSTSLTTDSARSYVADLDDPALAPA
                     GWGATPAPASVHAAPDMAVYELHVRDFSASDASVPAAHRGKYLAFADAGSAGMRHLRA
                     LAAAGITDVHLLPVFDFASVPEAGCVTPSIPRAAADSERQQAAVVAVAGRDCFNWGYE
                     PWHFGAPEGSYATDPADGAVRIREFRAMVQALHASGLRVGMDLVFNHTNASGQSPRSV
                     LDRIVPGYYQRLDADGNVEHSTCCENTATEHAMMGKLMVDMAVRWAAQYHVDSFRFDL
                     MGHQPRAAMETLQRAVDAATGRHVDLFGEGWNFGEIADGRRFVQASQLSLAGSGIGTF
                     SDRARDAIRGGSPGDHGVALVARQGYINGLAYDPNDAAPPASRDALLRAADMVRVGLA
                     GSLRDYVLHAADGRDTPLHAIDYNGQPAGYASQPSEVVNYVENHDNLTLFDLDALKLP
                     RATSRADRVRVQMLGVALTAFSQGIAYFHGGMDGLRSKSLDGNSFDSGDWFNRVDWSD
                     RVNGFGAGLPPREGNGADWPWMRPLLADPAIRPRPRDIAAARAMFRDLLRIRASTPLF
                     RLRTAEEIRARLRFDNTGP"
BASE COUNT          290 a          877 c          799 g          310 t
ORIGIN      
        1 gccgggtctt cgcgcatccg cctctaccac tcggtcgacg gagcgctcgt cgccgcgcgt
       61 ggcgccgtgg tgcgcggtgc cgacgatgcg atcgcgctcg ccgcggacac gtcgcccctg
      121 cccgccgccc tcgcggaacg cttccgcttc atcggcgcag gcgcgcggct cgcgctgccg
      181 gctgccgcgc gcgcgcgcct gccggcgctg ctgcgcgggc aactggtgct ggtgcgcgag
      241 gacgcaagcg gaagcgtgct cgacgccacc gcgctgcagt cgccgggcgc gctcgacgcg
      301 ttgtatccgg ccgcggcgcg catcaccggc ttcggcgcga cgccggcggc cacggccacg
      361 cgcttccgcg tgtgggcgcc gggtgcgcgc gcggtgtcgg tgtgcgtgta cgcccgcggc
      421 gatgcacccg cggacgggct gctgccgctg cggcgtgagg acgccaccgg cgcctggtcg
      481 gtcgatgcgc ccgccgacct gcgcggccgc tactacgcct acctcgtcga cgtgtatgcc
      541 cgtggcaccg gcgtcgtgcg caaccgcgtc accgatccgt attcgaccag cctgaccacc
      601 gactcggcgc gcagctacgt cgccgacctc gacgatccgg cgctcgcacc cgccggctgg
      661 ggagcgacgc ccgcgcccgc cagcgtgcac gcagcgccgg acatggcggt gtacgaactg
      721 cacgtgcgcg acttctccgc cagcgacgcg agcgtgccgg ccgcgcaccg cggcaagtac
      781 ctcgccttcg ccgacgcggg ctcggccggc atgcgccact tgcgggcgct tgccgcggcc
      841 ggcatcaccg acgtgcacct gttgccggtg ttcgacttcg ccagcgtgcc ggaggccggg
      901 tgcgtcaccc cgtcgatccc gcgcgcggcc gccgacagcg agcgccagca ggcggcggtc
      961 gttgcggtcg ccggtcgcga ctgcttcaac tggggctacg agccctggca tttcggcgcg
     1021 cccgaaggca gctacgccac cgatccggcc gacggcgcgg tgcgcatccg cgagttccgc
     1081 gcgatggtgc aggcgctgca cgccagcggc ctgcgggtcg gcatggacct cgtgttcaac
     1141 cacacgaatg cgtccggcca atcgccgcgc tcggtgctgg accggatcgt ccccggctac
     1201 taccagcgcc tcgacgccga cggcaacgtc gagcactcga cctgctgcga gaacaccgcc
     1261 accgagcacg ccatgatggg caagctgatg gtggacatgg cggtgcgctg ggcggcgcaa
     1321 taccacgtcg attcgttccg cttcgacctg atgggccacc agccgcgcgc ggccatggaa
     1381 acgctgcagc gcgcggtcga cgccgccacg ggccgccacg tcgacctgtt cggcgagggc
     1441 tggaacttcg gcgaaatcgc cgacggcagg cgcttcgtgc aggcctcgca gctgtcgctc
     1501 gccggctcgg ggatcggcac cttcagcgac cgcgcgcgcg atgcgatccg cggcggcagc
     1561 ccgggcgacc acggagtcgc gctggtcgcg cgccagggtt acatcaacgg cctcgcctac
     1621 gatcccaacg acgccgcgcc gccggcctcg cgcgacgcgc tgctgcgcgc cgccgacatg
     1681 gtgcgggtcg gccttgccgg ctcgctgcgc gactacgtgc tgcacgccgc ggacggccgc
     1741 gacaccccgc tgcatgcgat cgactacaac ggccagcccg ccggctacgc cagccagccg
     1801 tcggaagtcg tcaactacgt cgagaaccac gacaacctga cgctgttcga cctcgatgcg
     1861 ctgaagctgc cgcgcgccac ttcgcgcgcg gaccgcgtgc gcgtgcagat gctcggcgtc
     1921 gccctcaccg ccttcagcca gggcatcgcc tatttccatg gcggcatgga cggactgcgc
     1981 tcgaagtcgc tggacggcaa cagcttcgac tcgggcgact ggttcaaccg cgtggactgg
     2041 agcgaccgcg tcaacggttt cggcgcaggc ctgccgccgc gcgagggcaa cggcgcggac
     2101 tggccgtgga tgcggccgct gctcgcggac ccggcgatca ggccgcggcc gcgcgacatc
     2161 gccgccgccc gcgcgatgtt ccgcgacctg ttgcgcatcc gcgccagcac gccgctgttc
     2221 cgcctgcgca ccgcggagga gatccgggcc cggctgcgct tcgacaacac cgggcc
//
LOCUS       DATIQC010000051         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_603805, whole genome shotgun sequence.
ACCESSION   DATIQC010000051 DATIQC010000000
VERSION     DATIQC010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603805"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..450)
                     /locus_tag="VLM17_01045"
     CDS             complement(<1..450)
                     /locus_tag="VLM17_01045"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971609.1"
                     /note="catalyzes a two-step reaction, first charging a
                     tryptophan molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HSR64176.1"
                     /translation="MAPTRVLTGITTSGTPHLGNYVGAIRPAVAASRRDDVESFYFLA
                     DYHALIKVSEPARVQRSTLEIAAAWLACGLDPARVWFYRQSDIPEIPELTWLLTCVAG
                     KGLLNRAHAYKAAVDRNRAEGQDDDAGVSAGLFMYPVLMAADILLFNA"
     gene            566..1333
                     /locus_tag="VLM17_01050"
     CDS             566..1333
                     /locus_tag="VLM17_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009574161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64177.1"
                     /translation="MLRRCLLLAAALAASTACAPLSAQPLVRMTVIDRDSGQWLPEYR
                     HRGERWIAGSPGHRYGVRLTNTTGGRVLVVLSVDGVNAVTGESAAPSQAGYVLDPGES
                     AEIDGWRKSLDDVAAFVFTDLPDSYAARTGRPEDVGVIGIAVFREASPPIAPADDEPS
                     PLAGAARQAAAPAAEAADAMPQRLGTGHGAREWSPVAQTAFERASDTPAQLASVRYDD
                     RAHLVAMGVLPRRWPRRDDAHAPRAFPPGFVPDPPRW"
     gene            complement(1416..1568)
                     /locus_tag="VLM17_01055"
     CDS             complement(1416..1568)
                     /locus_tag="VLM17_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010374875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HSR64178.1"
                     /translation="MKRLIVLMLLTAFSSLTLTACNTMAGAGKDVQKAGEKVEQKAED
                     CKDAHC"
     gene            complement(1838..>2152)
                     /locus_tag="VLM17_01060"
     CDS             complement(1838..>2152)
                     /locus_tag="VLM17_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005989327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HSR64179.1"
                     /translation="IDEVGMKRVMEEALHGVDEKTHLHVSFDVDFLDPSIAPGVGTTV
                     PGGPNYREAQLVMEMIADCGRMGSLDIVELNPVLDSRNATALLAVDLVESLFGKSTLM
                     RD"
BASE COUNT          295 a          777 c          773 g          307 t
ORIGIN      
        1 ggcgttgaac agcaggatgt cggccgccat cagcaccggg tacatgaaca gccccgcgct
       61 cacccccgcg tcgtcgtcct gtccttccgc gcggttgcgg tcgaccgccg ccttgtaggc
      121 atgcgcgcgg ttgaggaggc ccttgccggc gacgcaggtg agcagccagg tcagctcggg
      181 gatctcgggg atgtcggact ggcggtagaa ccagacgcgc gccgggtcca gcccgcacgc
      241 cagccacgcc gcggcgatct ccagcgtcga gcgctgcacg cgcgccggct cgctgacctt
      301 gatcagcgcg tggtagtcgg cgaggaagta gaagctctcg acatcgtcgc gccggctggc
      361 ggccaccgcc gggcggatcg cgcccacgta gttgccgagg tgcggcgtgc ccgaggtggt
      421 gatgccggtg aggacgcggg tgggggccat tgcgaaaggg gtccggaaac agcgcgggat
      481 gcagggcccg cgcagtttac cggcgccaac cccgcgcgtc cgcgacgcgc gttcccagca
      541 gcgacctgcc acggagaccc gccccatgct gcgccgctgc ctgctgcttg ccgccgccct
      601 cgccgcctcg accgcctgcg cgccgctgtc cgcgcagccg ctggtgcgga tgaccgtcat
      661 cgaccgcgac agcgggcaat ggctgcccga ataccgccac cgcggcgaac gctggatcgc
      721 cggctcgccc ggccaccgct acggcgtgcg cctcaccaac accaccggcg ggcgcgtgct
      781 ggtggtgctg tcggtggacg gcgtcaacgc cgtgaccggc gaaagcgccg caccgtcgca
      841 ggcgggctac gtgctcgacc cgggggaaag cgcggagatc gacggctggc gcaagtcgct
      901 cgacgacgtc gccgcgttcg tgttcaccga cctgccggac tcctacgcgg cgcggaccgg
      961 gcgaccggag gatgtcggcg tgatcgggat cgcggtgttc cgcgaggcgt cgccgccgat
     1021 cgcgccggca gacgacgagc cgtcaccgct ggccggcgcg gcgcgccagg ccgcggcgcc
     1081 ggcggccgaa gccgcggatg cgatgccgca acggctcggc accgggcacg gcgcgcgcga
     1141 atggtccccg gtcgcgcaga ccgcgttcga gcgcgccagc gacactccgg cccagctggc
     1201 cagcgtgcgc tacgacgacc gagcgcacct ggtcgcgatg ggcgtgctgc cgcgacgctg
     1261 gccgcggcgc gacgacgcgc acgcgccgcg cgccttcccg ccaggcttcg tgccggatcc
     1321 gccgcgctgg tgaaagcgca cgcggcaaaa aagaacgggc cggatgaccg gcccgttctg
     1381 atgcgtccct gcgatgcgtc cgtgcatcgg tgcgatcagc agtgcgcgtc cttgcagtcc
     1441 tcggccttct gttcgacctt ttcgccggcc ttctgcacgt ccttgccggc gccggccatg
     1501 gtgttgcagg cggtcagcgt gagcgacgag aacgcggtca gcagcatcag gacaatcaag
     1561 cgcttcattc cagtctcctt tgcatgggca cgggcttgtt cggtaatccg cgcggccatg
     1621 aaaccgcagc ggcgcgtgaa gccgacgtgc atcggcgcac gcgcgcgggc agcgcggcgg
     1681 gcaccgttca gcgaacgcga cacgccgtcc gccacgccgt ttcacgcgtc gttcgcaggg
     1741 tcgccgcgcc gaaggagcgt tgtcgccgcg tggtccgcgg ctgccccttg ggcgtgcccg
     1801 caggggagcg ccgcccatcc ggtcggcgcg gcggcgctca gtcgcgcatc agcgtcgact
     1861 tgccgaacag gctttccacc aggtccaccg ccagcagcgc ggtcgcgttg cggctgtcga
     1921 gcacgggatt gagctcgacg atgtcgagcg agcccatgcg cccgcagtcg gcgatcattt
     1981 ccatcaccag ctgcgcctcg cggtagttcg ggccgccggg gacggtggtg ccgacgccgg
     2041 gcgcgatgct cgggtcgagg aagtcgacgt cgaagctgac gtgcaggtgg gtcttctcgt
     2101 ccacgccgtg cagcgcctcc tccatcaccc gcttcatgcc gacctcgtcg at
//
LOCUS       DATIQC010000052         1669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_179853, whole genome shotgun sequence.
ACCESSION   DATIQC010000052 DATIQC010000000
VERSION     DATIQC010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179853"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..380
                     /gene="dapF"
                     /locus_tag="VLM17_01065"
     CDS             <1..380
                     /gene="dapF"
                     /locus_tag="VLM17_01065"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HSR64180.1"
                     /translation="FGAASMGNPHALVEVEDVEVAPVGTLGPALQRHAAFPESVNVGF
                     AEVLTRDRIRLRVHERGAGETLACGSGACAAAAILMRRGMVEREVAVALPGGELVIGW
                     RDDDAPITMAGPAAFVFEGEFHV"
     gene            405..1100
                     /locus_tag="VLM17_01070"
     CDS             405..1100
                     /locus_tag="VLM17_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HSR64181.1"
                     /translation="MSEIEKPGAHEVAAWLRRHPQFLKQFPDLALSLVVPREDGPAAS
                     LASYQLEVLRDKNRELTRRLHELFANAQENERLAVRTHQLTLALLRQDNAADTLRAMA
                     ASLAEDFQGDLVRIVLFAPVAGLDDADWLQVIPADDARLAPFRDAIADGEPICGRLNP
                     DKHVLLYGARAGEVQSSVLLPLPGPSTGSGQATGLLAVGSHDPNRFFPGMGTLFLRMM
                     GEALVAALARYAA"
     gene            1108..>1669
                     /locus_tag="VLM17_01075"
     CDS             1108..>1669
                     /locus_tag="VLM17_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014509034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HSR64182.1"
                     /translation="MDDVGSGLRVAPAAIGDFLQHLAVERRASPNTLDGYRRDLVALA
                     DWSAAQGLDVEALAGDQLRAFVAAEHRRGLSPTSLQRRLSACRSFYRWLLKHGRIAAS
                     PALSVKAPKARRKLPQVLDPDEAKALVEVPTDAPLGVRDRALLELFYSSGLRLGELCG
                     LRWRDLDLATGLVTVLGKGNKQRSVPV"
BASE COUNT          218 a          606 c          605 g          240 t
ORIGIN      
        1 gcttcggcgc cgcctcgatg ggcaacccgc atgcgctcgt cgaggtggag gacgtcgagg
       61 tcgcgccggt cggcacgctc ggccccgcgc tgcagcggca cgcggcgttc cccgaatcgg
      121 tcaacgtcgg cttcgccgaa gtgctcaccc gcgaccgcat ccgcctgcgc gtccacgagc
      181 gcggcgccgg cgagacgctc gcctgcggca gcggcgcctg cgcggcggcg gcgatcctga
      241 tgcgccgtgg catggtcgag cgcgaagtcg ccgtcgcgtt gccgggcggc gaactggtga
      301 tcggctggcg cgacgacgac gcgccgatca caatggcggg gcccgctgca ttcgtcttcg
      361 agggggagtt ccatgtctga gccgcccgcc atgagcagcc acgcgtgagc gagatcgaaa
      421 agcccggtgc gcacgaggta gccgcctggt tgcggcgcca cccgcagttc ctcaagcagt
      481 ttcccgacct ggcgctgagc ctggtggtgc cgcgcgagga cggcccggcc gcgtcgctgg
      541 ccagttacca gctggaagtc ctgcgcgaca agaaccggga gctcacccgt cgcctgcacg
      601 agctgttcgc caatgcgcag gagaacgagc ggctggcggt gcgcacccac cagctcaccc
      661 tggcgttgct gcgccaggac aacgccgccg ataccctgcg cgcgatggcc gcgtcgctcg
      721 ccgaggactt ccagggcgac ctggtgcgga tcgtgctgtt cgcgccggtc gcggggctcg
      781 acgatgcgga ctggctgcag gtgattcccg cggacgacgc gcgcctcgcg cccttccgcg
      841 acgcgatcgc cgacggcgaa ccgatctgcg gtcgcctcaa tcccgacaag cacgtgctgc
      901 tctatggcgc gcgggccggg gaagtgcagt cgagcgtcct gctgccgctg ccgggccctt
      961 cgacaggctc aggacaggct accggcctgc tcgcggtcgg cagccatgat cccaaccgct
     1021 tcttccccgg catgggcacg ctgttcctgc gcatgatggg cgaggcgctg gtggcggcgc
     1081 tggcgaggta tgcggcctag cggcggcatg gacgacgtcg gcagcggact ccgcgtggcg
     1141 cccgccgcga tcggggactt cctgcagcac ctggcggtcg aacgccgcgc ctcgcccaac
     1201 accctcgacg gttaccgccg cgacctcgtc gcgctcgccg actggtccgc cgcgcagggc
     1261 ctcgacgtcg aggcgctggc gggcgaccag ctgcgcgcat tcgtcgccgc cgagcaccgc
     1321 cgcgggctgt cgccgaccag cctgcagcgg cggctttcgg cctgccgcag cttctaccgc
     1381 tggttgttga agcacggccg catcgccgcg agtccggcgc tgtcggtgaa ggcgccgaag
     1441 gcacggcgca agctgccgca ggtgctcgac cccgacgagg ccaaggcgct ggtcgaggtg
     1501 ccgacggacg cgccgctggg cgtgcgcgac cgcgcgctgc tggaactgtt ctattcctcc
     1561 ggcctgcgcc tgggcgagct gtgcggcctg cgctggcgcg acctcgacct cgccacgggc
     1621 ctggtcacgg tgctgggcaa gggcaacaag cagcgcagcg tgcccgtcg
//
LOCUS       DATIQC010000053         1694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_533282, whole genome shotgun sequence.
ACCESSION   DATIQC010000053 DATIQC010000000
VERSION     DATIQC010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533282"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VLM17_01080"
     CDS             <1..362
                     /locus_tag="VLM17_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016850464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSR64183.1"
                     /translation="LSGQLLAGYGGTLPDGGRSSGVLIAAPAGSTVRAVADGKVVFAD
                     WMNGYGLILIVDHGNGTMSLYAHNEALLRDVGSTVRRGDPVASVGNSGGQGRPALYFE
                     LRRNGQPVDPGSWLQRR"
     gene            511..>1694
                     /locus_tag="VLM17_01085"
     CDS             511..>1694
                     /locus_tag="VLM17_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR64184.1"
                     /translation="MRLHLMPSLLAVVLALPLAPACAQDAPAAAPASDDPDAAESAAS
                     KVPLAEIRRYVDVYNAVKQAYVDPVDDRKLMQSAIKGLLLDLDPHSEYLEKTDAQAFD
                     EETSGAYDGIGVEVQPMPDGTIKIVSPIDDTPAAHAGLKSGDVITAIDGKPVTGSNDD
                     ANPLRGKPGSKVVLTLQREGVAKPFDVTLVRETIRVASVRGRMLEPGLGYIRVAAFQA
                     ETAADFEQALDRLQAQGGGKLRGLVLDLRSNPGGLLVSAVQIADDLLDRGSIVSTRGR
                     IPMSDSEFSATPGDRLAGAPLVVLVDAGSASAAEVLAGALADNHRARVVGSRTFGKGS
                     VQTLLPLDNGDSVKLTPARYYPPSGKSIQARGIEPDVVLHAGKDGVDGARADYAESLL
                     PG"
BASE COUNT          253 a          640 c          593 g          208 t
ORIGIN      
        1 cgctgtcggg ccagctgctg gccggctacg gcggcaccct gccggatggc ggtcgcagtt
       61 ccggcgtgct gatcgccgcg cccgcgggca gtaccgtccg cgcggtcgcc gacggcaagg
      121 tggtgttcgc cgactggatg aacggctacg ggctgatcct gatcgtcgac cacggcaacg
      181 gcacgatgag cctgtacgcg cacaacgagg cgctgctgcg cgacgtcggc agcaccgtgc
      241 ggcgcggcga cccggtggcg agcgtcggca actccggcgg gcagggccgg ccggcgttgt
      301 acttcgaact gcgccgcaac ggccagcccg tggatccggg cagctggctg cagcgtcgct
      361 gaaccgcgct cggacgccgc gcccgcgcgt cgtccgcgca tcgcaccccg ccggatcgcg
      421 tgcgcataac cggcgcttcg cacaacccgc cttgccgcgt gcgcataatc gccgcacgcg
      481 gcgaccgctg ccccaccgcc cggagacccg atgcgcctgc acctgatgcc gtctttgctc
      541 gccgtggtgc tcgcgctgcc gctggcgccc gcctgcgcgc aggacgcgcc cgccgccgcg
      601 ccggcaagcg acgatcccga tgccgccgag agcgccgcca gcaaggtccc gctcgccgag
      661 atccgccgct acgtcgacgt gtacaacgcg gtcaagcagg cctacgtcga tccggtcgac
      721 gaccgcaagc tgatgcagtc ggcgatcaag ggcctgctgc tcgacctcga cccgcacagc
      781 gaatacctcg agaagaccga cgcgcaggcc ttcgacgagg agaccagcgg cgcctacgac
      841 ggcatcggcg tggaagtgca gccgatgccc gacggcacga tcaagatcgt gtcgccgatc
      901 gacgacacgc ccgccgccca cgccgggctc aagtcgggcg acgtgatcac cgcgatcgac
      961 ggcaagccgg tcaccggcag caacgacgac gccaacccgc tgcgcggcaa gcccggcagc
     1021 aaggtggtcc tgaccctgca gcgcgaaggc gtcgccaagc ccttcgacgt gaccctggta
     1081 cgcgagacca tccgcgtcgc cagcgtgcgc gggcgcatgc tcgagccggg cctgggctac
     1141 atccgcgtcg ccgcgttcca ggccgagacc gccgccgatt tcgaacaggc gctcgaccgg
     1201 ctgcaggcgc agggcggcgg caagctgcgc ggcctcgtgc tcgacctgcg cagcaacccg
     1261 ggcgggctgc tggtctcggc ggtgcagatc gccgacgacc tgctcgaccg tggcagcatc
     1321 gtcagcacgc gcgggcgcat tccgatgagc gacagcgaat tcagcgcgac cccgggcgat
     1381 cgcctcgctg gcgcgccgct ggtggtgctg gtcgacgccg gctcggcgag cgcggcggag
     1441 gtgctcgccg gcgcgctcgc cgacaaccac cgcgcgcggg tggtcggcag ccgcaccttc
     1501 ggcaaggggt cggtgcagac gctgctgccg ctggacaacg gcgactcggt caagctcacc
     1561 cccgcgcgct actacccgcc cagcggcaag tcgatccagg cgcgcggcat cgaaccggac
     1621 gttgtgctgc acgccggcaa ggacggcgtc gacggcgcgc gcgccgacta cgccgagtcg
     1681 ctgctgcccg gcca
//
LOCUS       DATIQC010000054         6688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_74200, whole genome shotgun sequence.
ACCESSION   DATIQC010000054 DATIQC010000000
VERSION     DATIQC010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6688
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74200"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VLM17_01090"
     CDS             complement(<1..429)
                     /locus_tag="VLM17_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSR64185.1"
                     /translation="MTGRDLRIGLVALAVAGALAGCGRGDGAVEAPRPVLVVHPLAED
                     GRADAAYAGEVRAREESALGFRVGGKLVRRLVDVGDRVHAGQLLAELDPGDLQLQARA
                     AQAQLAVAQAELARAGADRARFAKLAQQQLVSRSALDAQQA"
     gene            511..1155
                     /locus_tag="VLM17_01095"
     CDS             511..1155
                     /locus_tag="VLM17_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSR64186.1"
                     /translation="MMCPFRPKPRPAAPGRPKDAEKGAAILDAAKRLFVAHGFDGVSM
                     DQIAAEAGVSKLTVYSHFGDKEALFGAAARAYCEQQLPPSLFEARPEVPLRARLLEIA
                     RAFFAMVCSPEAVAGHRILCTPRLAESPVSRLFWEAGPQRVQDAFSTLLRHRVAVGQL
                     AIDDIPRASSQFFALLKGEPHAQLVFGCGVPARDEAEAHLAAAVDMFLRAYAPH"
     gene            1306..1971
                     /locus_tag="VLM17_01100"
     CDS             1306..1971
                     /locus_tag="VLM17_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019662052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HSR64187.1"
                     /translation="MNADTLDFAKAREAMVEQQVRPWDVLDTRVLEVLAQLPREDFVP
                     EAYRALAYADLALPLAHGQEMLKPVVEGRLLQALGLRPGDSVLEVGTGSGYLTACLGR
                     LAREVVSLELHPDLAEAARARLAAHGLDGNVRIEAADALHYRTERRFDAVCVTGAVDA
                     IPPRFLEWLAPGGRLFVVQGRAPAMSAVLVRNEAGARRIDSLFETELPYLEGATPPPE
                     FHL"
     gene            2018..3433
                     /locus_tag="VLM17_01105"
     CDS             2018..3433
                     /locus_tag="VLM17_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HSR64188.1"
                     /translation="MRRSPLVLAIALAVLPIAGAHAEDLLQTYELARTGDAQLAGAEA
                     TQRATREGAVQARAALLPQIGGDASYTRSHGDSSGQNVFGGTPLPPSDSSSDTTVKDY
                     GLSLSQAVFDYSRISQLRSQRALSTASEFQLRSAGDTLVTRTSAAYFSVLVGIETLAA
                     AEAQEAALKKQFDFASKRLEVGLAPITDVHEARAQYDSARANTIVTRNALADAYQALA
                     EITGKPIHNLKGLPGNFQPQLPEQGDVDAWVSNAIANNPALQAQQFQLKSAEADVQTA
                     RGGHMPTLYLNGSYGDQRSNGTSTDNLDQSAVDFANQNKSRSIGLTLRVPIFSGGATQ
                     SQVRQALARRDLAQDQLEQQKRALDRNTRNAYQTLVAGISEIEARRLALVSAQSAYDA
                     SQVGLEVGTRTVIDVLINQQNLFNAQREYARSRYNFLQNRLLLEQAAGSLDVTDVQDV
                     NRLLTADAESKLAPSDLTPTP"
     gene            complement(3527..4819)
                     /gene="waaA"
                     /locus_tag="VLM17_01110"
     CDS             complement(3527..4819)
                     /gene="waaA"
                     /locus_tag="VLM17_01110"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008573684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HSR64189.1"
                     /translation="MRMDPAGRLLRALYSLALYLLLPVTVYHLIWRGFRQAAYFQRWN
                     ERYGVYDPGLQPCGLWVHAVSVGEVNAAAPLVEALRRERPDLRLLVTTITPTGSARVR
                     ALWGDRVEHVYLPYDLPGAVGRFLRHFRPRLALVMETELWPNLLFGCAEHGVPAYIVN
                     ARLSHRSLRGYQLLRPLLGRALRTLRAVLAQSPADGRRFVQLGATRAQVAVTGNLKYD
                     IAVGEGWPTFAAAFRAHAGERPAWIAASTHPDEEAAVIAIHRRLRARWPELLLLWAPR
                     HPERFKPVEREAVEAGWRVATRQLTQWPDRDDAVFVVDTLGELALFYGCAQVAFVGGS
                     LQPIGGHNLLEPAAVGTAVVTGPHLHNFADIAKQLQAAGALRVGADVDAVGAAIEALL
                     ADPAARAAMAGAARALVEQGRGALARTLAAVADDLPRA"
     gene            4882..5814
                     /gene="lpxL"
                     /locus_tag="VLM17_01115"
     CDS             4882..5814
                     /gene="lpxL"
                     /locus_tag="VLM17_01115"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferase"
                     /protein_id="HSR64190.1"
                     /translation="MSDDVLRDPVDPGPPPRGPSQWPTWLGIGAMVLLARLPWPLQRA
                     LGRALGRALRVVLRGRRRVAARNLALCFPELTADARKALLRASFDALGIGVFEFARAW
                     WGGIAPLRRGLVVEGLEHLEAARAQGHGVILISGHFTTLEVCGRLMCDHAPLAGMYRP
                     HAHPAMEWAVKRGRLRYASAMFGRDQLRAAIRHLKQGGLLWFAPDQDTRRGDSVFVPF
                     FGLPAHSLTSTHQLARLSGAAVLAFAHERRADGGYTLRLSPAFAEFPSRDATLDTARV
                     MAAIEAMVRAVPAQYLWIHRRFKRQPDGLPDPYR"
     gene            complement(5821..>6688)
                     /locus_tag="VLM17_01120"
     CDS             complement(5821..>6688)
                     /locus_tag="VLM17_01120"
                     /inference="COORDINATES: protein motif:HMM:NF015251.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR64191.1"
                     /translation="HRPATTVAAWVARWPQARLLRAGALATWLAWPWLARRRRVARTN
                     LALCFPELAPAQRERLLRDTLRATVTGLLESLRAWFAPARSLRGLCAIEGLEHLHAVR
                     REGRGVLLLTGHSPHLELGGRFLAGAFDGPLAIVARRNNDACLEAWLDGARRRAFAEV
                     IAKKDVRGLLRTLSAGGVVAYAADQDFSYQHAFVPFFGVQAATLTAIPALAQRGNAAV
                     LPYWFWREGDGRYRLRIDPPWPGWPSGDATRDAARYMAELEREVRRHPAQYLWVHRRF
                     KTRPAGEPSPYA"
BASE COUNT          967 a         2535 c         2340 g          846 t
ORIGIN      
        1 ggcctgctgc gcatccagcg cggagcggct caccagttgc tgctgcgcga gtttcgcgaa
       61 gcgcgcgcga tccgcgccgg cgcgcgcgag ttcggcctgc gcgacggcga gctgcgcctg
      121 cgcggcccgc gcctgcagct gcaggtcgcc gggatcgagt tccgcgagca gctggcccgc
      181 atgcacgcga tcgccgacat ccaccaggcg ccgcaccagc ttgccgccga cgcggaagcc
      241 gagcgcgctt tcctcgcgcg cccgcacctc gccggcatac gcggcgtccg cacggccgtc
      301 ctcggcgagc ggatgcacca ccagcaccgg acgcggcgcc tcgaccgcgc catcgccccg
      361 gccacacccc gcgagcgcgc cggccaccgc cagcgcgacc agtccgatcc gcaaatccct
      421 gcccgtcatc tgcgcccgcc ggccccgcgg ccaattagtg aaccggccgg tatgctataa
      481 ataacgaacc ggctagtcta gtatttggcg atgatgtgtc ccttccgccc gaaaccgaga
      541 cccgcggccc ccggccggcc caaggacgcg gagaagggcg cggcgatcct cgacgccgcg
      601 aagcggctct tcgtcgcgca tggcttcgac ggcgtgagca tggaccagat cgccgccgag
      661 gccggcgtgt caaagctcac cgtgtacagc catttcggcg acaaggaggc gctgttcggc
      721 gcggccgcgc gggcgtactg cgagcagcag ctgccgccct ccctgttcga ggcgcggccg
      781 gaagtgccgc tgcgcgcgcg cctgctggag atcgcgcgcg cctttttcgc gatggtgtgc
      841 tcgccggagg cggtcgccgg ccaccgcatc ctgtgcacgc cgcggctggc ggagtcgccg
      901 gtgtcgcgcc tgttctggga agccggcccg cagcgggtgc aggacgcctt cagcacgctg
      961 ttgcgccacc gtgtcgccgt cggccagctc gccatcgacg acatcccgcg cgcgtcctcg
     1021 cagttcttcg ccctgctcaa gggcgagccg catgcgcagc tggtgttcgg ctgcggcgtg
     1081 ccggcgcgcg acgaggccga agcgcacctg gccgctgccg tcgacatgtt cctgcgcgcc
     1141 tatgcgccgc attgaggcgg ccgcgggcgc ggcgaagccc gccctgccgg tgggcccact
     1201 gacttccggc actcagtacg ggtgtgctac cacagtcatg ctgtcgccaa cgtcggtcgc
     1261 cacgcccgct aaaatggcgg gttccgcgac cgggaattcc aagccatgaa cgccgacacc
     1321 ctcgatttcg caaaggcccg cgaggccatg gtcgaacagc aggtccgtcc ctgggacgtg
     1381 ctcgacacgc gcgtgctcga ggtgctggcg cagttgccgc gcgaggactt cgtgcccgaa
     1441 gcctaccgcg cgctggccta cgccgacctc gcgctgccgc tcgcccacgg ccaggaaatg
     1501 ctcaagccgg tggtcgaggg ccgcctgctg caggcgctcg gcctgcgccc tggcgacagc
     1561 gtgctggaag tcggcaccgg cagcggctac ctgaccgcct gcctcggccg cctggcgcgc
     1621 gaagtggtga gcctggagct gcacccggac ctggccgagg ccgcgcgcgc gcgcctggcc
     1681 gcgcacgggc tcgacggcaa cgtacggatc gaggcggccg atgcgctgca ctaccgcacc
     1741 gagcgccgct tcgacgcagt ctgcgtgacc ggcgcggtcg acgcgatccc gccccgcttc
     1801 ctcgagtggc tggcccccgg cggccgcctg ttcgtggtgc agggccgcgc tccggcgatg
     1861 tcggccgtgc tggtgcgcaa cgaagcgggc gcccgccgca tcgattcgtt gttcgaaacc
     1921 gaattgccct acctcgaggg cgccacgccc ccgcccgaat tccacctgta agcgacctcc
     1981 cgcacggccc gtgcgggttt cgacaaagga tccccgcatg cgccgcagtc cgctcgtcct
     2041 cgccatcgcc ctcgccgtgc tgccgatcgc tggcgcgcac gccgaagacc tgctgcagac
     2101 ctacgaactc gcgcgcacgg gcgacgccca gctcgccggc gccgaagcca cccagcgagc
     2161 gacccgcgag ggcgcggtgc aggcacgcgc ggcgctgctg ccgcagatcg gcggcgatgc
     2221 cagctacacc cgctcgcacg gcgacagcag cggccagaac gtgttcggcg gcacgccgct
     2281 gccgccgagc gacagcagtt cggacaccac cgtcaaggac tacggcctgt cgctcagcca
     2341 ggcggtgttc gactattcgc gcatctccca gctgcgcagc cagcgcgcgc tgagcacggc
     2401 cagcgaattc cagctgcgct ccgcgggcga caccctggtg acccggacct cggccgccta
     2461 tttcagcgtg ctggtcggca tcgaaaccct ggctgcggcc gaagcgcagg aagctgcgct
     2521 gaagaagcag ttcgacttcg ccagcaagcg cctcgaggtc ggcctcgcgc cgatcaccga
     2581 cgtacacgag gcccgtgccc agtacgacag cgcgcgcgcc aacaccatcg tgacccgcaa
     2641 cgcgctggcg gatgcctacc aggcgctcgc cgagatcacc ggcaagccga tccacaacct
     2701 caagggcctg ccgggcaact tccagccgca gcttcccgaa cagggcgatg tcgacgcgtg
     2761 ggtcagcaac gccatcgcca acaatcccgc gctgcaggcg cagcagttcc agctgaagag
     2821 cgcggaggcg gacgtccaga ccgcgcgtgg cggccacatg ccgacgctgt acctcaacgg
     2881 cagctatgga gaccagcgca gcaacggcac ctcgaccgac aacctcgacc agagcgcggt
     2941 ggacttcgcg aaccagaaca agtcgcgcag catcggcctg accctgcgcg tgccgatctt
     3001 ctccggcggc gcgacccagt cgcaggtgcg ccaggcgctc gcgcgccgcg acctcgccca
     3061 ggaccagctg gagcagcaga agcgcgcgct cgaccgcaac acgcgcaacg cctaccagac
     3121 cctggtcgcg ggcatcagcg agatcgaggc gcgccggctg gcgctggtgt cggcgcagag
     3181 cgcctacgac gcctcgcagg tcggcctgga agtcggcacg cgcaccgtca tcgacgtgct
     3241 gatcaaccag cagaacctgt tcaacgcgca gcgcgaatac gcgcgctcgc gctacaactt
     3301 cctgcagaac cggctgctgc tggagcaggc cgccggctcg ctcgacgtga ccgacgtgca
     3361 ggacgtcaac cgcctgctca ccgccgacgc cgaatccaag ctcgcgccga gcgacctcac
     3421 gccgacgccc tgagcgtccc gcgccagtga cgaaacgccg gcctcgcgcc ggcgttttcg
     3481 tttgccacca tggccctgga cacgcgccgg agagggcccg gcccgcctac gcgcgcggca
     3541 ggtcgtccgc gaccgccgcg agcgtgcgcg ccagcgcgcc gcggccctgc tccaccagcg
     3601 cgcgcgccgc cccggccatc gccgcgcgcg cggccgggtc ggcgagcagc gcttcgatgg
     3661 ccgcgccgac ggcgtcgacg tcagcgccca cgcgcagcgc gcccgccgcc tgcagctgct
     3721 tcgcgatgtc ggcgaagttg tgcaggtgcg gcccggtcac caccgccgtg ccgaccgccg
     3781 ccggctccag caggttgtgc ccgccgatgg gctgcaggct gccgccgacg aaggcgacct
     3841 gcgcgcagcc atagaacagc gccagctcgc cgagcgtgtc gaccacgaac accgcgtcgt
     3901 cgcgatcggg ccattgggtc agctggcgcg tggccacccg ccagcccgcc tccaccgcct
     3961 cgcgttcgac cggcttgaag cgctcgggat ggcgcggcgc ccacagcagc aacagttcgg
     4021 gccagcgcgc gcgcaggcga cggtggatcg cgatgaccgc cgcttcctcg tcgggatgcg
     4081 tgctcgccgc gatccatgcc ggccgctcgc ccgcgtgcgc gcggaacgcc gcggcgaagg
     4141 tcggccagcc ttcgccgacg gcgatgtcgt atttcaggtt gccggtcacc gcgacctgcg
     4201 cgcgcgtcgc gccgagctgg acgaagcggc ggccgtcggc gggcgactgc gccagcaccg
     4261 cgcgcagcgt gcgcagcgcg cggcccagca acgggcgcag cagctggtag ccgcgcagcg
     4321 agcggtgcga gaggcgcgca ttgacgatgt acgcgggcac gccgtgttcg gcgcagccga
     4381 acagcaggtt cggccacagc tcggtctcca tcaccagcgc gagccgcggg cggaaatggc
     4441 ggaggaaccg gcccaccgcg cccggcaggt cgtaggggag gtagacgtgt tcgacccggt
     4501 cgccccacag cgcgcgcacc cgcgccgatc cggtcggcgt gatggtggtg accagcaggc
     4561 gcaggtcggg acgctcgcgg cgcagggcct cgaccagcgg cgcggcggcg ttgacctcgc
     4621 cgaccgacac cgcgtgcacc cagagcccgc agggctgcag gcccgggtcg tacacgccat
     4681 agcgctcgtt ccagcgctgg aaataggcgg cctggcggaa cccgcgccag atcaggtggt
     4741 agaccgtcac cggcaacagc aggtagaggg cgagcgagta cagggcacgc agcagtcgcc
     4801 cggcgggatc catgcgcatg cggcgaagga taaggccccg ccgccacgcg cgcgcatcgg
     4861 ccttgccact agactggcgc gatgtccgat gacgtcctgc gcgatcccgt cgatcccggc
     4921 ccgccgcccc gcggaccgtc gcaatggccg acgtggctcg gcatcggcgc gatggtcctg
     4981 ctggcgcgcc tgccctggcc gctgcaacgc gcgctcggac gtgcgctcgg gcgcgcgctg
     5041 cgggtggtgc tgcgcgggcg ccggcgcgtg gccgcgcgca acctcgcgct gtgcttcccg
     5101 gaactgaccg ccgacgcgcg caaggcgctg ctgcgcgcca gcttcgatgc gctcggcatc
     5161 ggcgtgttcg agttcgcgcg cgcctggtgg ggcgggatcg cgccgctgcg ccggggactg
     5221 gtcgtcgaag ggctcgagca tctcgaggcg gcgcgcgcgc agggccacgg cgtcatcctc
     5281 atctccggcc acttcaccac cctggaggtg tgcggccggc tgatgtgcga ccacgcgccg
     5341 ctggccggca tgtaccggcc gcacgcgcac ccggcgatgg aatgggcggt caagcgcggg
     5401 cggctgcgct acgcgtcggc gatgttcggg cgcgaccagc tgcgcgcggc gatccgccat
     5461 ctaaagcagg gcggcctgct gtggttcgcc cccgaccagg acacgcgccg cggcgacagc
     5521 gtgttcgtgc cgttcttcgg cctgcccgcg cacagcctca cgtccaccca ccagctcgcg
     5581 cgcctctcgg gcgcggcggt gctcgccttc gcccacgagc gccgcgccga cggcggctac
     5641 acgttgcggc tgtcgccggc attcgcggag ttcccctcgc gcgacgccac cctcgacacc
     5701 gcgcgggtga tggcggcgat cgaggcgatg gtgcgcgcgg taccggcgca gtacctgtgg
     5761 atccaccggc gcttcaagcg ccagccggac ggcctgcccg atccctatcg ctgaccgcgg
     5821 ctacgcatag ggcgagggct cgcccgcggg ccgggtcttg aagcgccggt gcacccacag
     5881 gtactgtgcg ggatggcggc gcacctcacg ttccagctcg gccatgtagc gcgccgcatc
     5941 gcgggtggcg tcgccactgg gccagcccgg ccacggcgga tcgatgcgca gccggtaacg
     6001 gccgtcgcct tcgcgccaga accagtatgg caacaccgcc gcgttgccgc gttgcgccag
     6061 agcgggaatc gcggtgagcg tcgccgcctg cacgccgaag aacggcacga acgcgtgctg
     6121 gtaggagaag tcctggtcgg ccgcgtaggc gaccacgcca ccggcggaaa gggtgcgcag
     6181 cagcccgcgc acgtccttct tggcgatcac ctcggcgaag gcgcgccggc gcgcgccatc
     6241 cagccaggct tcgaggcagg cgtcgttgtt gcggcgggcg acgatcgcca gcggaccgtc
     6301 gaaggccccg gcgaggaagc gcccgcccag ctccaggtgc ggcgagtgcc cggtcagcag
     6361 cagtacgccg cggccctcgc ggcgcaccgc gtgcaggtgc tcgaggcctt cgatggcgca
     6421 aagcccgcgc agcgagcgcg cgggcgcgaa ccaggcgcgc agcgattcga gcaggccggt
     6481 gaccgtcgcc cgcagggtgt cacgcagcag gcgttcgcgt tgcgcgggcg ccagctccgg
     6541 aaagcacagt gccaggttgg tgcgcgcgac ccgccggcgg cgggccagcc acggccacgc
     6601 cagccacgtc gccagcgcgc ctgcacgcag caaccgggcc tgcggccagc gcgcgaccca
     6661 cgccgccacc gtcgtcgcgg ggcggtgc
//
LOCUS       DATIQC010000055         4708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_392365, whole genome shotgun sequence.
ACCESSION   DATIQC010000055 DATIQC010000000
VERSION     DATIQC010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392365"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1401)
                     /locus_tag="VLM17_01125"
     CDS             complement(<1..1401)
                     /locus_tag="VLM17_01125"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007509873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047547 - 2-methylcitrate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019679 - propionate metabolic process,
                     methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-methylcitrate
                     dehydratase/aconitate hydratase"
                     /protein_id="HSR64192.1"
                     /translation="MSHYDARSAARPQPDQPMVDIADYVIDYQVDSQEAYDTARYMLL
                     DSLACAMLAMKFPDCVRHLGPLVPGATLPGGALVPGTGFELDPVQAAFNIGTLVRWLD
                     FNDTWLAAEWGHPSDNLGAILAVADWMSRQALRDGGKPTTVRDVLTWAIKAHEIQGCY
                     ALQNSFNRVGLDHVILVRLASTAVATAMMGGTRDEVVNAVSHSWIDNGALRTYRHAPN
                     TGPRKSWAAGDACRRAVTHALNAVHKKVVGYPSALSAKTWGFYDVAFKGNEFRFERPF
                     GSYVMENVLFKISFPAEFHAQTAVEAAMRLHPLVAGRIDEVERVEIETQEAGVRIIDK
                     TGPLANYADRDHCIQYMVAVPLIFGRLTAEDYTDAVAADPRIDALRDRMTVVENPQFT
                     KDYFDPARRYIGNSVRVFFKDGSATEKVSIDYPIGHRKRRAEGIPVLMAKCEAALRAH
                     LPAAQVDRILELAANPA"
     gene            1529..2320
                     /locus_tag="VLM17_01130"
     CDS             1529..2320
                     /locus_tag="VLM17_01130"
                     /EC_number="1.13.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008214889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III extradiol ring-cleavage dioxygenase"
                     /protein_id="HSR64193.1"
                     /translation="MDAPLRLPSLFLSHGSPMLAIEDSPAGRFLDGLGERLGQPRAIV
                     IASAHFTTRQPALGADPRPPTVHDFNGFPPQLYQLQYPAPGDPELAGRVAGLLREAGL
                     PAAPLVEHGLDHGIWVPLRRMYPQADIPVVPVAVVPQADARMHLALGRALAPLREQGV
                     LVIGSGGFVHNLGDLAWHDRSAAMPGWATEFADWMRARLAGGDIDALLDWTSRAPHPQ
                     RAHPTPEHLLPLFVALGAAGPTPRSEVLHASHEYGSLALDAFAFE"
     gene            2613..3071
                     /locus_tag="VLM17_01135"
     CDS             2613..3071
                     /locus_tag="VLM17_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HSR64194.1"
                     /translation="MKLAWILWLSQMLPQPAADSLCLSTTVYLEARDQSVRGQQAVAE
                     VALRRRDSGLWGNTLCKVVTAPKQFAPSLVPADTNLRNGDAWAEAVAVALDSQRNWAL
                     PPGKRREIVPGASHFAASAIASPSWRNAYQVATIGDHTFYRVQKLKPRHA"
     gene            3156..3764
                     /locus_tag="VLM17_01140"
     CDS             3156..3764
                     /locus_tag="VLM17_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HSR64195.1"
                     /translation="MKLYYTPGACSLADHITLEWSGLAYEAVRVPRDKRHSAEYLAIN
                     PAGAVPALEDGGWILTQNAAILQYIADRAPRAALAGDGTPRSRAEVNRWLGLINSDLH
                     PAFKPLFGATNYLDDANTIEKTRTDARAKLRALFERIDRQLMGREWIAGLRSIADPYL
                     FVVTRWAKGSNVDLRGLDNLERHFRRMHEDAGVRRALAVEQS"
     gene            complement(3843..>4708)
                     /locus_tag="VLM17_01145"
     CDS             complement(3843..>4708)
                     /locus_tag="VLM17_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010368421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HSR64196.1"
                     /translation="ANAHPMDVMRTGCSVLGTVLPEREGHPASEARDIADKLIASFGS
                     MLLYWWHFTRNGRRIDVETEDDTVAAHFLHLLHGEPPSQPNADALDKSLILYAEHEFN
                     ASTFTARVIAGTGSDLHSCITGAIGALRGPKHGGANEVAMDIISRYNTADEAEADIRA
                     RVERKEIVIGFGHPVYTVGDPRNPIIKEISRSLCTEGGNRTLFDVSERIETLMWDTKK
                     MFPNLDWYSASAYHMMGIPTPMFTPLFVIARTTGWSAHVIEQREDGTIIRPSANYVGP
                     DDRAYVPIGQR"
BASE COUNT          675 a         1648 c         1643 g          742 t
ORIGIN      
        1 cgccgggttg gcggccagct cgaggatccg gtcgacctgc gccgccggga ggtgcgcccg
       61 cagggccgcc tcgcacttgg ccatcagcac cgggatgccc tcggcccggc gcttgcggtg
      121 gccgatcggg tagtcgatgg agaccttctc ggtggcactg ccgtccttga agaagacccg
      181 gaccgagttg ccgatgtagc gccgggccgg gtcgaaatag tccttcgtga actgcgggtt
      241 ctcgaccacc gtcatcctgt cgcggagggc gtcgatgcgc gggtcggcgg cgaccgcgtc
      301 ggtgtagtcc tcggcggtca ggcggccgaa gatcagcggc acggcgacca tgtactggat
      361 gcagtggtcg cggtcggcgt agttcgccag ggggccggtc ttgtcgatga tgcgcacgcc
      421 cgcctcctgg gtctcgatct cgacgcgctc gacctcgtcg atgcggccgg cgaccagggg
      481 gtgcaggcgc atcgccgcct ccaccgcggt ctgggcgtgg aactcggccg ggaagctgat
      541 cttgaagagg acgttctcca tcacgtagct gccgaacggg cgctcgaacc tgaactcgtt
      601 gcccttgaag gcgacgtcgt agaagcccca ggtcttggcg ctcagcgcgc tcgggtagcc
      661 gaccaccttc ttgtgcacgg cgttcagcgc gtgggtgacg gcgcggcggc aggcgtcgcc
      721 ggcggcccag ctcttgcgcg gaccggtatt gggcgcgtgg cggtaggtgc gcagggcgcc
      781 gttgtcgatc caggagtgcg acacggcgtt gaccacctcg tccctggtcc cgcccatcat
      841 cgcggtcgcc accgcggtcg aggccaggcg gaccaggatc acgtggtcca ggcccacccg
      901 gttgaacgag ttctgcaacg catagcagcc ctggatctcg tgcgccttga tcgcccaggt
      961 cagcacgtcg cgcacggtgg tcggcttgcc gccgtcgcgc agcgcctgcc ggctcatcca
     1021 gtcggcgacg gcgaggatcg cgccgaggtt gtcggacgga tggccccact cggcggccag
     1081 ccaggtgtcg ttgaagtcga gccagcgcac cagggtgccg atgttgaagg cggcctggac
     1141 cgggtcgagt tcgaagcccg tgcccggcac cagcgcgccg cccggcaggg tcgcgccggg
     1201 caccagcgga ccgaggtgcc ggacgcagtc cgggaacttc atcgccagca tcgcgcaggc
     1261 cagggaatcc agcagcatgt agcgggcggt gtcgtacgcc tcctgagagt cgacctggta
     1321 gtcgatgacg tagtcggcga tgtcgaccat cggctggtcg ggctgcgggc gggcggcgga
     1381 gcgggcgtcg tagtggctca tcggggcgct gctggcggaa ggaagccggg tattttgcca
     1441 gaggcgtgtg atcgcgatcg cgttgccggc acggaccatt ccgctggcct cgattggacc
     1501 gacacggcgc cgggcgcatg ctgcgcgcat ggacgccccg ctccgcctgc ccagcctgtt
     1561 cctctcccac ggttcgccga tgctggcgat cgaggattcg cctgccggcc gcttcctcga
     1621 cgggctcggc gaacgactcg gccagccgcg ggcgatcgtc atcgcctccg cgcacttcac
     1681 cacccgccag ccggcgctgg gcgccgaccc gcgtccgccc accgtgcacg atttcaacgg
     1741 cttcccgccg cagctgtacc agctgcagta cccggcgccc ggagacccgg aactggccgg
     1801 acgcgtggcc gggttgctgc gggaagcggg cctgccggcg gcgccgctgg tcgaacatgg
     1861 tctcgaccac gggatctggg tgccgctccg gcgaatgtac ccgcaggccg acatcccggt
     1921 ggtgccggtg gcggtcgtgc cgcaggcgga cgcgcgaatg cacctcgcgc ttggccgtgc
     1981 gctggcgcca ctgcgcgaac agggcgtact ggtgatcggc tcgggcggct tcgtgcacaa
     2041 cctgggcgac ctcgcctggc acgaccgctc cgccgccatg cccggctggg ccaccgagtt
     2101 cgccgactgg atgcgtgccc ggctggccgg gggcgacatc gacgccctgc tcgactggac
     2161 cagccgcgcc ccgcacccgc aacgcgcgca ccccacgccg gaacacctcc tgcccctgtt
     2221 cgtcgccctc ggcgcggccg gccccacgcc gcgcagcgag gtcctgcatg cctcgcacga
     2281 atacgggtcc ctggcgctgg acgccttcgc cttcgagtag ggaacccctt ccggggacac
     2341 cggagcgccg gcccggaaaa ccgcgacgac cgtcacgtgt tcagctggcg ttaggtttgt
     2401 gatggctacc gtgcgcccac ttttgcccgc cacccttttg gtgggcgccg gcgccctccc
     2461 gctgatctcc gcggggcttg gcgcccgggc tgaaggcagc catagagccg ccgccctccc
     2521 cagtacgcca tgtcggaccg gttgtgcacc ccgccttgat cgaggcgggg ccagcatcgc
     2581 cgcccggcgc aacggagcaa ggagtccgac gcatgaagct ggcctggatc ctctggctgt
     2641 cgcagatgct gccgcagccg gccgccgatt cgctgtgcct gagcaccacc gtctacctgg
     2701 aggcgcgcga ccagtcggtg cgcggccagc aggcggtggc cgaagtcgcc ctgcgccgcc
     2761 gcgacagcgg actgtggggc aacacgctgt gcaaggtcgt gaccgcgccc aagcagttcg
     2821 cgcccagcct ggtgccggcc gacaccaacc tgcgcaacgg cgacgcatgg gccgaggcgg
     2881 tcgcggtcgc gctcgactcc cagcgcaact gggccctccc gcccggcaag cgccgcgaga
     2941 tcgtgccggg cgcaagccac ttcgccgcga gcgcgatcgc ctcgccgagc tggcgcaatg
     3001 cctaccaggt ggcgacgatc ggcgaccaca ccttctatcg cgtgcagaaa ctcaagcccc
     3061 gccacgcgtg acgcatcgtt gcgcgcggca tgatcgacgg ttgacgccgc gctgcgcata
     3121 gtccccctcc tgtgcgtctt ccacggagag ggacgatgaa gctctattac acgccgggcg
     3181 cctgctcgct cgccgaccac atcacgctcg aatggagcgg cctggcctat gaggccgtgc
     3241 gcgttccgcg cgacaagcgc cattcggcgg agtacctggc gatcaacccg gccggtgccg
     3301 tgcccgcgct ggaggacggc ggctggatcc tcacccagaa cgccgcgatc ctgcagtaca
     3361 tcgccgaccg cgcgccacgg gcggccctcg cgggcgacgg cacgccacgc agccgcgccg
     3421 aggtgaaccg ctggcttggc ctgatcaatt ccgacctgca tcccgcgttc aagccgctgt
     3481 tcggtgcgac gaactatctc gacgacgcca acaccatcga gaagaccagg accgacgcac
     3541 gcgcgaagct gcgcgcgctg ttcgagcgca tcgaccgaca gctgatgggc cgcgaatgga
     3601 tcgccggcct gcgctccatc gccgatccct acctgttcgt ggtgacgcgg tgggcgaagg
     3661 gcagcaacgt ggacctgcgc gggctggaca acctcgaacg ccacttcagg cgcatgcacg
     3721 aggatgcagg ggtgcgccgg gcgctggcgg tggagcagtc ctgacgttgt gccggcgaca
     3781 gccacgccaa caaaaagggc cacgctttcg cgcggccctt ttttttcgtg gcatcggcgc
     3841 ggtcagcgct ggccgatcgg cacgtaggcg cgatcgtcgg ggccgacgta gttcgcgctc
     3901 gggcggatga tcgtgccgtc ctcgcgctgc tcgatcacgt gcgcgctcca accggtggtc
     3961 cgcgcgatca cgaacagcgg ggtgaacatc ggcgtcggga ttcccatcat gtggtaggcc
     4021 gacgcgctgt accagtcgag gttggggaac atcttcttcg tatcccacat cagcgtctcg
     4081 atccgctcgc tgacgtcgaa cagcgtcctg ttgccgccct ccgtgcacag cgagcgcgag
     4141 atctccttga tgatcggatt ccggggatcg ccgacggtgt agaccggatg gccgaagccg
     4201 atcacgattt ccttgcgctc cacgcgcgcc cggatgtcgg cttccgcctc gtccgccgtg
     4261 ttgtagcgcg aaatgatgtc catcgcgact tcgttggcgc cgccgtgctt cggcccgcgc
     4321 agcgcgccga tcgcgccggt gatgcacgaa tgcaggtccg agccggtgcc ggcgatgacg
     4381 cgcgcggtga aggtcgaggc gttgaactcg tgctcggcgt acaggatcag cgacttgtcg
     4441 agcgcatcgg cgttcggctg cgacggcggc tcgccgtgca gcaggtgcag gaagtgcgcg
     4501 gcgaccgtgt cgtcctccgt ctcgacgtcg atgcggcggc cgttgcgggt gaaatgccac
     4561 cagtacagca gcatcgagcc gaagctggcg atcagcttgt cggcgatgtc gcgcgcttcc
     4621 gacgccgggt ggccctcgcg ctccggaagc acggtgccca gcaccgagca gccggtgcgc
     4681 atgacgtcca tcgggtgcgc gttcgcgg
//
LOCUS       DATIQC010000056         5604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_38883, whole genome shotgun sequence.
ACCESSION   DATIQC010000056 DATIQC010000000
VERSION     DATIQC010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5604
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38883"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1073)
                     /locus_tag="VLM17_01150"
     CDS             complement(<1..1073)
                     /locus_tag="VLM17_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HSR64197.1"
                     /translation="MHAQATPVDGNAQAAADAGLRHVGDDVPGIRRVRHGRGFAYRDA
                     RGKPVRDAATLARIRALAVPPAWTDVWICADPRGHVQATGRDARHRKQYRYHPQWSAA
                     RGDGKFDRLVGFGEALPELRRCLRRDWKLDGFPRDKVLAIVVGVMAETLVRIGNPEYA
                     RSNRSYGLTTLRNRHVAFLAGGRARFRFRGKGGLEHDLVLDDAHLVKLVRRCQQLPGQ
                     ALFQYEGDDGDVVPVDSGEVNAYLRDAMGADYTAKDFRTWGATLSAFQRLAHAGLPVR
                     ADGRPAGERALVARQNAILREVAQALGNTLAVCRKSYVDPAVFAGWRDGSLQRAAAQA
                     RGERQWEQAALRFLRRAHRPAAKA"
     gene            1180..2220
                     /locus_tag="VLM17_01155"
     CDS             1180..2220
                     /locus_tag="VLM17_01155"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HSR64198.1"
                     /translation="MAALGGNTDAGPAAGAADGACVRILQFDADADDRVLEEAAIDPA
                     ALGERQLLWVDVEDEDAEVADAVVRRLVERLRLGPGAPALLRQIDGRPRLHNVGDWFL
                     VQVTAVEHAGALQFNGRALAIVCGHNFVLTLHRGPLGFLDQLRRREHAETRLGSLSAE
                     SFTASLLDWQIESYLHAVSDFEAAVDRLEVAILASRVQRESLPELARLRRGASRLRRM
                     LAPHRHVFGALARPDFRPDAGADVDRQFRALEQRFERAMDAVENARDLVVGSFELFAT
                     RTAQRTNDTMRVLTFVTVLTGSLAVVSGALGMNFKASLFESAGFGFWTTIAAMGAFVV
                     LSVAFARWRRWF"
     gene            complement(2231..3484)
                     /locus_tag="VLM17_01160"
     CDS             complement(2231..3484)
                     /locus_tag="VLM17_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016904735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TCR/Tet family MFS transporter"
                     /protein_id="HSR64199.1"
                     /translation="MTTPAPRARNAALAFIFVTVLIDVLAFGLIIPVLPHLVQQLIGG
                     DTEHAAYWVGVFGTVFAAIQFLSSPIQGALSDRFGRRPVILLSCLGLGLDFCFMALAP
                     TLAWLMAGRIISAITSASFTTANAYIADITSPEKRAKSFGMIGAAFGLGFIVGPLIGG
                     VLGNIDLRLPFWGAAVLALANFCYGAFVLPESLPPERRSPRFDWSHARPLGSIHLLRR
                     YPHVMSLAFVVLLANMAHYVYPSTFVLFADVRYGWNQQQVGYVLAFVGVLSVIVNGVL
                     VGRIVKALGERRALLLGLGSGVVGFTIYGFAATPWLFLAGMPVSALWSVAAPATQALI
                     TREVGPEMQGRIQGALMSMVSLAGIVAPAMFAGTFGWFIGHRASSYQPGAAFFLAACV
                     LAAAWGIALRHARPRPAAVAAPETA"
     gene            complement(3519..4499)
                     /locus_tag="VLM17_01165"
     CDS             complement(3519..4499)
                     /locus_tag="VLM17_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSR64200.1"
                     /translation="MPDDRDERLECLIVGAGPAGLVAATYLARFRRRIAVVDAGASRA
                     RWIPTSHNCPGFPLGVSGERLLERLRAQAAAFGVEVESGRIERLEREGDGFLARADDG
                     RAWRARCVILATGIVDRMPGTGGDVAPWEAAIDAGTLRICAVCDAFEASDERIAVYAP
                     TDEAIRHAVFLRTFSRRVDAVRSDAVEATADCAALARAAGIAVLPAPTALACTRDGCT
                     MTFADGGTRAYDVVYPVLGDVPQSQLATALGARGDAGGELLTDRQQQTSVDGLYAVGD
                     VVSALNQIAVAVGHAAIAATAVHNRLPRNFREDDAAPSPPAGAGALPPAR"
     gene            complement(4555..5187)
                     /gene="folE"
                     /locus_tag="VLM17_01170"
     CDS             complement(4555..5187)
                     /gene="folE"
                     /locus_tag="VLM17_01170"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019337959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HSR64201.1"
                     /translation="MSASLPPIPSTAPTAPADDGVTREAAEEAIRTLLRWAGEDPARE
                     GLLDTPKRVAKAYRDWFSGYAMDPDDYLARTFEEVEGYDELIVLRDIEFESHCEHHMA
                     PIIGKAHVGYLPDGKVVGISKLARVVDTFARRFQVQEKMTAQVADCIQRVLQPRGVGV
                     VIEATHECMTTRGVHKRGVSMVTSKMLGTFREDARTRAEFLQFIDVGPGR"
     gene            complement(5292..>5604)
                     /locus_tag="VLM17_01175"
     CDS             complement(5292..>5604)
                     /locus_tag="VLM17_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64202.1"
                     /translation="ASEAIDRREDLGHFQQIFHTMPYYVEGHSWHDYAPAYRYGLDSY
                     DRFQGQALEAVDTQLQGGWEANARFGSRLPWQHARPAVVHAWQSLDEARARQPRAAQP
                     H"
BASE COUNT          749 a         2020 c         2103 g          732 t
ORIGIN      
        1 gctttcgccg ccgggcggtg cgctcgcctg aggaagcgca gcgccgcctg ctcccattgc
       61 cgctcgccgc gcgcctgcgc cgccgcgcgc tgcaggctgc cgtcgcgcca gccggcgaac
      121 accgccggat cgacgtagga cttgcggcac accgccaggg tgttgccgag cgcctgcgcg
      181 acctcgcgca ggatcgcgtt ctgccgggcg acgagcgcgc gctcgccggc tggccgcccg
      241 tcggcccgca ccggcaggcc ggcatgcgcc aggcgctgga acgccgacag cgtcgcgccc
      301 caggtgcgga agtccttcgc cgtgtagtcg gcgcccatcg cgtcgcgcag gtaggcgttg
      361 acctcgccgg agtccaccgg cacgacgtcg ccgtcgtcgc cctcgtactg gaacagcgcc
      421 tgccccggca gctgctggca acgccgcacc agcttcacca ggtgcgcgtc gtcgagcacc
      481 aggtcatgct cgagcccgcc cttgccgcgg aagcggaagc gcgcgcggcc gccggcgagg
      541 aaggcgacgt ggcggttgcg cagcgtggtc agcccgtacg accggttgct gcgcgcgtat
      601 tcggggttgc cgatgcgcac cagcgtctcg gccatgacgc cgaccacgat cgccagcacc
      661 ttgtcgcgcg ggaagccgtc cagcttccag tcgcggcgca ggcagcggcg cagctccggc
      721 agcgcttcgc cgaagccgac caagcggtcg aacttgccgt cgccgcgcgc cgcgctccat
      781 tgcgggtggt agcggtactg cttgcggtgg cgggcgtcgc ggccggtggc ctgcacgtgc
      841 ccgcgcgggt cggcgcagat ccacacgtcg gtccacgccg gcggcaccgc cagcgcgcgg
      901 atgcgggcga gcgtggccgc atcgcgcacc ggcttgcccc gcgcatcgcg gtaggcgaag
      961 ccgcgcccgt ggcggacccg gcggatgccc gggacgtcgt cgccgacatg gcgcagcccc
     1021 gcgtcggccg cggcctgcgc gttgccgtcg acgggcgttg cctgcgcatg catcgccgcg
     1081 agcatcgcag gcacgcgtca acgcggcgca acgattcacc gcgcgttcgc gcggcgctgc
     1141 cggaagatgc ggcgtcgcac ccattcatgc gaggcgcgca tggccgctct cggcggcaac
     1201 accgacgcgg ggcccgccgc cggagcggcc gacggcgcct gcgtgcgcat cctgcagttc
     1261 gacgcggacg ccgacgaccg cgtgctggag gaagcggcga tcgacccggc cgcgctcggc
     1321 gagcgccagc tgctgtgggt cgacgtggag gacgaggatg ccgaagtcgc ggacgcggtg
     1381 gtgcggcggc tggtggagcg gttgcggctg gggcccggcg cccccgcgct gctgcgccag
     1441 atcgacggcc ggccgcgcct gcacaacgtc ggcgactggt tcctggtgca ggtgaccgcg
     1501 gtcgagcacg ccggcgcgct gcagttcaac ggccgcgcgc tggcgatcgt atgcgggcac
     1561 aacttcgtgc tcaccctcca ccgcgggccg ctcggcttcc tcgaccagct gcgccggcgc
     1621 gagcacgcgg aaacccggct cggctcgttg agcgcggaga gcttcaccgc ctcgctgctc
     1681 gactggcaga tcgagagcta cctgcatgcg gtgagcgact tcgaggccgc ggtcgaccgc
     1741 ctggaagtcg cgatcctcgc cagccgggtg cagcgcgagt cgctgcccga gctggcccgg
     1801 ctgcgccgcg gcgcctcgcg gctgcggcgg atgctggccc cgcaccggca cgtgttcggc
     1861 gcactcgccc ggccggactt ccggcccgac gccggcgccg acgtggaccg ccagttccgc
     1921 gcgctcgagc agcgcttcga acgggcgatg gacgcggtgg agaacgcgcg cgacctcgtc
     1981 gtcggcagct tcgagctgtt cgcgacccgc accgcgcagc gcaccaacga caccatgcgc
     2041 gtgctgacct tcgtcaccgt gctgaccggg tcgctggcgg tggtgtccgg cgcgctcggc
     2101 atgaacttca aggcgtcgct gttcgagagc gcgggcttcg gcttctggac gacgatcgcc
     2161 gcgatgggcg cgttcgtggt gctgtcggtg gcgttcgcgc gctggcggcg ctggttctga
     2221 cgccgcccgc tcaggcggtt tccggcgccg ccaccgccgc cggtcgcggc ctcgcatggc
     2281 gcagcgcgat cccccaggcg gcggcgagca cgcaggcggc gaggaagaac gccgcgcccg
     2341 gctggtacga cgacgcgcgg tggccgatga accagccgaa ggtgccggcg aacatcgccg
     2401 gcgcgacgat cccggcgagg ctgaccatgc tcatcagcgc gccctggatg cgtccctgca
     2461 tctccgggcc gacctcgcgg gtgatcagcg cctgggtcgc cggcgcggcc accgaccaca
     2521 gcgcgctgac cggcatgccg gcgaggaaca gccacggcgt ggccgcgaat ccgtagatgg
     2581 tgaagccgac cacgcccgag cccaggccca gcagcagcgc gcggcgctcg ccgagcgcct
     2641 tgacgatgcg gcccaccagc acgccgttga cgatgacgct gagcacgccg acgaaggcga
     2701 gcacgtagcc gacctgctgc tggttccagc cgtagcgtac gtcggcgaac agcacgaacg
     2761 tgctcggata gacgtagtgc gccatgttgg cgagcaggac cacgaaggcc aggctcatca
     2821 cgtggggata gcggcgcagc aggtggatcg agccgagcgg cctggcgtgc gaccagtcga
     2881 agcgcggcga gcgccgctcc ggcggcagcg actcgggcag cacgaacgcg ccgtagcaga
     2941 agttggccag ggccagcacg gccgcgcccc agaacggcag ccgcaggtcg atgttgccga
     3001 gcacgccgcc gatgagcggg ccgacgatga agcccaggcc gaacgcggcc ccgatcatgc
     3061 cgaagctctt cgcgcgcttt tccggcgacg tgatgtcggc gatgtacgca ttggcggtgg
     3121 tgaagctcgc cgaggtgatc gccgaaatga tccgccccgc catcagccac gccagcgtcg
     3181 gcgccagcgc catgaagcag aaatccaggc cgaggccgag gcaggacagc aggatcaccg
     3241 gccggcggcc gaagcggtcc gacagcgcac cctggatcgg ggaggagagg aactggatcg
     3301 ccgcgaacac ggtgccgaac acgccgaccc agtaggccgc gtgctcggtg tcgccgccga
     3361 tcagctgctg cacgaggtgc ggcagcaccg ggatgatcag gccgaacgcc agcacgtcga
     3421 tcagcacggt gacgaagatg aaggcgagcg cggcgttgcg cgcccggggt gcgggggtgg
     3481 tcacggcggg gggaagggac tggcgcgggg cgggcagtct agcgcgccgg cggcagcgct
     3541 cccgccccgg ccggcggcga tggcgccgca tcgtcctcgc ggaagttgcg cggcaggcgg
     3601 ttgtgcacgg cggtcgcggc gatcgccgcg tggccgaccg cgaccgcgat ctggttgagc
     3661 gcgctgacca cgtcgccgac ggcgtacagg ccatcgacgc tggtctgctg ctggcggtcg
     3721 gtgaggagtt cgccgcccgc gtcgccgcgg gcgccgagcg cggtcgccag ctgcgattgc
     3781 ggaacgtcgc ccagtaccgg atacaccacg tcgtaggcgc gcgtgccgcc gtcggcgaag
     3841 gtcatcgtgc agccgtctcg cgtgcacgcc agcgcggtgg gcgccggcag cacggcgatg
     3901 ccggccgcgc gcgccagcgc ggcgcagtcg gcggtcgctt cgacggcgtc gctgcgcacg
     3961 gcgtccaccc ggcgggagaa cgtgcgcagg aacaccgcgt ggcggatcgc ctcgtcggtc
     4021 ggcgcgtata cggcgatgcg ctcgtcgctg gcttcgaagg cgtcgcacac cgcgcagatg
     4081 cgcagcgtgc cggcgtcgat cgccgcctcc cacggcgcga catcgccgcc ggtgccgggc
     4141 atgcggtcga cgatgccggt ggcgaggatc acgcagcgcg cccgccaggc gcggccgtcg
     4201 tcggcccggg cgaggaagcc gtcgccctcg cgttcgagcc gttcgatccg cccgctttcg
     4261 acctccacgc cgaaggccgc ggcctgcgcc cgcaaccgtt cgagcaggcg ctcgccgctg
     4321 acgccgagcg gaaagccggg acagttgtgg ctggtcggga tccagcgcgc gcggctcgcg
     4381 ccggcgtcca ccaccgcgat gcggcggcgg aagcgcgcga ggtaggtcgc ggcgaccagc
     4441 ccggccgggc cggcaccgac gatcaggcac tccaggcgtt cgtcgcggtc atcgggcacg
     4501 cgccgagtct ggccgcggcg cgctcaggcc ggcgtgagcg cgcgccggcc ggcctcagcg
     4561 accgggcccg acgtcgatga actgcaggaa ctcggcgcgg gtgcgcgcgt cctcgcggaa
     4621 ggtgccgagc atcttcgagg tcaccatgct caccccgcgc ttgtgcacgc cgcgggtggt
     4681 catgcattcg tgggtcgcct cgatcaccac gccgacgccg cgcggctgca gcacgcgctg
     4741 gatgcagtcg gcgacctgcg cggtcatctt ctcctgcacc tggaagcgcc gcgcgaacgt
     4801 gtcgaccacc cgcgcgagct tgctgatgcc gaccaccttg ccgtccggca ggtagcccac
     4861 gtgcgccttg ccgatgatcg gcgccatgtg gtgctcgcag tggctttcga actcgatgtc
     4921 gcgcagcacg atcagctcgt cgtagccctc gacttcctcg aaggtgcgcg caaggtagtc
     4981 gtccgggtcc atcgcgtagc cgctgaacca gtcgcggtaa gccttggcga cgcgcttggg
     5041 cgtgtcgagc aggccttcgc gcgcgggatc ctcgccggcc cagcgcagca gggtgcggat
     5101 cgcctcctcg gcggcctcgc gggtgacgcc gtcgtccgcg ggcgcggtcg gcgcggtgga
     5161 gggaatcggc ggcagcgagg cactcatgcg cggcggtctc ggcgggcccg gtgggcgggg
     5221 cgggcgcgca tcctaccaag cgccgcatcc gtggccgcgg cggcccatgt gcaaagcccg
     5281 cgcggctgcg ctcaatgggg ctgcgcggcg cgcggctggc gggcccgcgc ctcgtccagc
     5341 gactgccagg cgtggaccac ggccggccgc gcgtgctgcc agggcaggcg cgagccgaag
     5401 cgcgcgttgg cttcccagcc gccctgcagc tgggtgtcga cggcctccag cgcctggccc
     5461 tggaagcggt cgtagctgtc cagtccgtag cggtacgccg gcgcgtagtc gtgccagctg
     5521 tggccctcca cgtagtacgg catggtgtgg aagatctgct ggaagtggcc gaggtcttcg
     5581 cggcgatcga tcgcttccga cgcg
//
LOCUS       DATIQC010000057         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_569065, whole genome shotgun sequence.
ACCESSION   DATIQC010000057 DATIQC010000000
VERSION     DATIQC010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569065"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VLM17_01180"
     CDS             <1..660
                     /locus_tag="VLM17_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64203.1"
                     /translation="ELNVARRAAWLMPLLLALGGCATNRSVISLAVPAPATTVSGDKV
                     AVIESVTDQRRFEEDPDEPSTPSLKKGDKYALDAEGRKSAIARKRNGYGHAIGDIVLA
                     PPQTVETITRQLVAQGLQQHGYRVVDAAGAPDGALRVKVAIEEFWSWFTPGFWAVDME
                     ARLRTLLQFAGASDKRVEISAYGKKSAPTGREGNYQQSYDRAFQDYLQKQDAALGQAG
                     L"
     gene            complement(602..1548)
                     /gene="rsgA"
                     /locus_tag="VLM17_01185"
                     /pseudo
     CDS             complement(602..1548)
                     /gene="rsgA"
                     /locus_tag="VLM17_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017166507.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
BASE COUNT          213 a          548 c          583 g          204 t
ORIGIN      
        1 gaactgaacg ttgcccgccg cgcggcgtgg ctgatgccgc tgttgctggc gctcggcggc
       61 tgcgcgacca accgcagcgt catcagcctg gcggtgcccg cgccggccac cacggtcagc
      121 ggcgacaagg tcgcggtgat cgagtcggtc accgaccagc gccgcttcga ggaggatccg
      181 gacgagccga gcacgccgtc gctgaagaag ggcgacaagt acgcgctgga tgccgaaggc
      241 cgcaagagcg cgatcgcgcg caagcgcaac ggctacggac acgccatcgg cgacatcgtg
      301 ctggcgccgc cgcagacggt ggaaacgatc acccggcagc tggtcgccca gggcctgcag
      361 cagcacggct accgcgtcgt cgatgcggcg ggcgcgccgg acggcgcgtt gcgggtgaag
      421 gtggcgatcg aggagttctg gtcgtggttc acgcccggct tctgggcggt ggacatggag
      481 gcccggctca ggaccctgct gcagttcgcc ggcgccagcg acaagcgcgt cgaaatctcg
      541 gcgtacggca agaagagcgc gccgaccggt cgcgaaggca actaccagca gtcctacgac
      601 cgcgccttcc aggactacct gcagaagcag gacgccgccc tgggccaggc gggcctgtaa
      661 ccgcggcgcg ggcggttcag cgccgcccgc gcttcccgtc cgggcgcccg ccgggggact
      721 tcggcgcgac tttcgcttcc gccttctgcg ccaggcgccc ggcgaggcgg tcggcggcgc
      781 cggcgacctc gtcgcgcagc ttgaggaagt tggcgtagcg gccggcgtcg agcgtgccgg
      841 cctcgagcgc cgcgcgcacg gcgcagccgg gctcgcgctg gtggcggcag tcgttgaagc
      901 ggcagccggt ggcgagcgcg gcgatgtcgt cgaagctgtc ggcgacgtct tcctcgccgg
      961 tcggcttgag ctcgcgcatg cccggcgtgt cgatcaggca ggcgccggcc ggcagcggga
     1021 tcagcgcgcg gtgggtcgtg gtgtggcgtc cgcgggcgtc gtgcgcgcgc acctcggccg
     1081 tcttcatctt cgcgacgccg agcagggtgt tggtcagggt cgacttgccc gcgccggagg
     1141 agccgaccag caccacgctg cggcccggct gcagccatgg cgacaggacc tggacgctgg
     1201 ccgcgtcctt cgcgttgagc gccaccaccg cgacctcctg cgcgagcagg ccggccagct
     1261 cctcgcgcgc cagcgcgacg gcggcatcgc ccgccttgtc ggccttgccc agcaccacca
     1321 ccggggtcgc gccgctgccc tgcacgagca gcaaatagcg ctcgatccgg cgcgggttga
     1381 agtcggcgtc gagcccgcac accacgaaca cggtgtcgac gttggcggcg atcagctgct
     1441 ggcggtagtg ctcgccggcc gcgccgcgct tgatcgccga gtggcgcggc agcagggcga
     1501 cgatgcgtgg cgcggcgacc gggccttcga ccagcaccca gtcgccga
//
LOCUS       DATIQC010000058         7592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_74329, whole genome shotgun sequence.
ACCESSION   DATIQC010000058 DATIQC010000000
VERSION     DATIQC010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7592
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74329"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..334)
                     /gene="uppS"
                     /locus_tag="VLM17_01190"
     CDS             complement(<1..334)
                     /gene="uppS"
                     /locus_tag="VLM17_01190"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HSR64204.1"
                     /translation="MSPPPRIPRHLAVIMDGNGRWAQQRRRPRAIGHRAGARAVNRCI
                     EFCLDKGVEALTLFAFSSENWGRPEDEVGALMKLFLVALDREVAELHRRGVRIRFIGE
                     RVRFSEDIR"
     gene            complement(355..912)
                     /gene="frr"
                     /locus_tag="VLM17_01195"
     CDS             complement(355..912)
                     /gene="frr"
                     /locus_tag="VLM17_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HSR64205.1"
                     /translation="MINDIQKDAQTRMAKSVDALRHTLVKVRTGRASTALVDHIKVNY
                     YGSDVPLSQVASVAVADARSLTITPWEKQIVGAVEKAILASDLGLTPNTAGTVIRLNL
                     PALTEERRKELSKVVHGEGEDTKVAIRNIRRDANHHVKELLKDRKITEDEAARSDQDI
                     QKMTDKAIKDVDDVVKAKEQELMAV"
     gene            complement(995..1921)
                     /locus_tag="VLM17_01200"
     CDS             complement(995..1921)
                     /locus_tag="VLM17_01200"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HSR64206.1"
                     /translation="MHAHHHDDHHHAHSHAGSATRAFAAVTLINLAYTIVEAWYGFST
                     DSLALLSDALHNLGDVLGLGLAWGAAVLARQPPTERHTYGWRRATLLSPLANALLLVG
                     FAGALSWEAVLRLGAPPKIPALPVMVVAAIGIAVNLGAAWLVRGGHHHDLNRRGAFLH
                     LIGDAAVSLAAVLAGLGMQLLGWEWLDPVTALLVGAVVALGAFGLLRDAFNAAMDAVP
                     AGIDQAAVLEHLAAQDGVAAVHHLHIWSLGAGEIAMTAHLVRPRDGDHDAFLDRLVDE
                     LDARFGINHPTLQIEHGDACEHDRHDRAPHAH"
     gene            complement(1972..2700)
                     /gene="pyrH"
                     /locus_tag="VLM17_01205"
     CDS             complement(1972..2700)
                     /gene="pyrH"
                     /locus_tag="VLM17_01205"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019659122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HSR64207.1"
                     /translation="MSQLAYRRVLLKLSGEALMGDEDYGIDPKVIGRLAREVVEAQQA
                     GAEIALVIGGGNIFRGAGLAAGGMDRVTGDQMGMLATVINALAMQDALEKLGAKARVM
                     SAIKINDVCEDYIRRRAVRHLEKGRLVICAAGTGNPFFTTDSGAALRAIEIGADLLLK
                     ATKVDGVYDRDPKKFPGAVRYDRLSYDEVIARDLQVMDTAAFALCRDSDLPLRIFDMS
                     QPGVLLRILRGETIGTLVQGRDGT"
     gene            complement(2961..3122)
                     /locus_tag="VLM17_01210"
     CDS             complement(2961..3122)
                     /locus_tag="VLM17_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64208.1"
                     /translation="MICRVAPVSVFWIETSAPAAALPNKEPTALCAKAPPEAKVKPSA
                     MQRALRRND"
     gene            3049..5955
                     /locus_tag="VLM17_01215"
     CDS             3049..5955
                     /locus_tag="VLM17_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016945037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR64209.1"
                     /translation="MFGKAAAGAEVSIQNTETGATRQITADANGRFTAAQLQPGHYKV
                     TAAGQSQEVEVVVGTGTSVNFAPAAEGTASLERIEVVGNRVNPIDVSSVESTTVFSQK
                     QIQALPVARNVTDVALLAPGTVQGDSFGGTLNLASFGGSSVAENGYYINGFDVTNIRN
                     FLSYADLPFDAIGSQQIKTGGYGAEYGRSLGGVINLVTKRGTNTWTGGVSAYFEPQGL
                     SESGKNVRTRNAELAANGQVYEVFRSANENSSIKYDAYAGGALVKDHLFFFGMVEGQS
                     DKSDVYGYDQSQHTSDTSPKGLVKLDWNISDNHSLEFTGIHNRTTTHIDSYFNAQPYS
                     TSHDDKFDDAKYLNGGDVYIGKYTGHFTDTFDLSVMGGWLKNYNNWRTEAPPGTDCPA
                     AYDSRTGGLDYIGFWNPAAFTIQDRSFGPETDTRKALRIDADWQLGDHALRFGYDHEK
                     FTSTHDGLSYSGGIYYRYFSDTLVRVRHYQTASGSYTVENSALYAEDSWRINDRWLAY
                     LGLRSESFDNKNDAGESFVKADNLIAPRLGFAWDVNGDSTFKVYGNAGRYYIPVASNT
                     NIRASGFEALTTEFYNYSGIDPVTGAPITLGTRTSGPFINGSLTAPDPRTVADTNLKP
                     MYQDEFILGAQWLMGGDWTFGVKAIHRQVKNGMDDYCSHAAFANWAADNGYTNFDPST
                     MATCIIVNPGKDVNVALDLENDGNYSVVTVPNSYLQLPKYQRKYNALEFTAERPKQDG
                     WYMQGSYTYAKSTGNVEGYVNSSLEQEDAGLTQDFDNRYFEDGANGSLPNDRRHTLKL
                     FGTYDIGDQVTLSGNFLLQSGRPVNCQGYVPLEQLDPLDAQDLEAYSASSFYCLTKTG
                     TFEDTVDGVRQLTPRGSFGRTPWIHRFDLGVSYRPHWANDQLELRMDVFNVFNSQKVT
                     ERNEAGELVRQTDDNDIDGDGNTSEFYYRVNPDFLNDVNYQAPRYVRFTARFKW"
     gene            5969..7585
                     /locus_tag="VLM17_01220"
     CDS             5969..7585
                     /locus_tag="VLM17_01220"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HSR64210.1"
                     /translation="MVRKGRLRAAFLLQETTDAMSFERRWARALAHFQDGNHAAARVA
                     CEALTRERPRDAGVHWMLSTIAQAGGGFRSSVRHARLAVADWDRLPAMQRLALVRRLI
                     SVGDYQAAVGYLESIPVVDPGPPCIGEIIEQAAMLDAHVLAGRWLDAAAAWGHRSAQL
                     AFLRGNHRKFTGDIEGAATAYEEAIALSPVDGHALHALAELQLKDGAGRRVDRLRRVI
                     EAGAAAPDSLVAANYGLFRELDRLGDTAGAWEALARGMRLKRSAARHDPDAERAMFAA
                     LSDALQAMPRAAAADGGPVPVFILGLPRTGTTLVERMLGNHPDVAACGELSELRMRCK
                     FASDHYCAGVMDAEGARRLVGIDPAAVGSEYLAHVAWRIGDRGWFTDKHPGNALLAGV
                     ILRALPQARVVYVRRNAMDACFSNLKALFAPGYYEYSYDITDVAVHYRRHARWMRQVV
                     EASGDRVLEVDYEALVEDPERQVARIVAHCGLPRAEGLTDLARNASAVSTASSVQVRD
                     AIYRTGVDAWQRYRSWLAPLEALLADAGQA"
BASE COUNT         1231 a         2566 c         2608 g         1187 t
ORIGIN      
        1 ggcggatgtc ctcggaaaag cgcacgcgct cgccgatgaa gcggatgcgc acgccgcgcc
       61 ggtgcagttc ggcgacctcg cggtccagcg cgaccaggaa cagcttcatc agcgcgccga
      121 cctcgtcctc cggacggccc cagttctcgc tggagaaggc gaacagggtc agcgcctcga
      181 cgcccttgtc gaggcagaac tcgatgcagc ggttgaccgc gcgcgcgccg gcgcggtggc
      241 cgatcgcgcg ggggcgccgg cgctgctgcg cccagcggcc gttgccgtcc atgatgacgg
      301 cgaggtggcg gggaatgcgc gggggcggcg acatgcgaac ggcggcgtgc cgcctcagac
      361 cgccatcagt tcctgttcct tggccttgac cacgtcgtcg acgtccttga tggccttgtc
      421 ggtcatcttc tggatgtcct ggtcgctgcg cgcggcctcg tcctcggtga tcttgcggtc
      481 cttgagcagt tccttgacgt ggtggttcgc gtcgcggcgg atgttgcgga tcgcgacctt
      541 ggtgtcctcg ccttcgccat gcacgacctt ggacagttcc ttgcggcgct cctcggtcag
      601 ggcgggcagg ttgaggcgga tgacggtgcc ggcggtgttc ggggtcaggc cgaggtcgga
      661 ggcgaggatc gccttctcca cggcgccgac gatctgcttt tcccacggcg tgatcgtcag
      721 cgagcgggca tcggcgacgg cgacgctggc gacctgcgac agcggcacgt ccgagccgta
      781 gtagttgacc ttgatgtggt cgaccagcgc ggtcgacgcg cgcccggtgc ggaccttgac
      841 cagggtgtgg cgcagcgcgt ccacgctctt ggccatgcgc gtctgcgcgt ccttctggat
      901 gtcgttgatc atcgccggct ccgggcccga gggtcagccg ggaagtatag cgaatggccg
      961 ctcgccggcc gttgcaggcg gatcgccccg gcgatcagtg cgcgtgcggc gcgcggtcgt
     1021 ggcggtcgtg ctcgcaggcg tcgccgtgct cgatctgcag cgtcgggtgg ttgatgccga
     1081 agcgcgcgtc gagctcgtcg accaggcggt cgaggaaggc gtcgtggtcg ccgtcccgcg
     1141 ggcgcacgag gtgggcggtc atcgcgatct cgccggcgcc gagcgaccag atgtgcaggt
     1201 ggtgcaccgc ggccacgccg tcctgcgccg cgaggtgttc gagcacggcc gcctggtcga
     1261 tgccggccgg gaccgcgtcc atggccgcat tgaaggcgtc gcgcagcagc ccgaatgcgc
     1321 cgagcgcgac gaccgcgccg accagcagcg cggtcaccgg gtccagccat tcccagccga
     1381 gcagctgcat gcccaggccg gcgagcaccg ccgccagcga caccgcggcg tcgccgatga
     1441 ggtgcaggaa ggcgccgcgg cggttgaggt cgtggtggtg gccgccgcgc accagccagg
     1501 cggcgccgag gttgaccgcg atgccgatcg ccgcgaccac catcaccggc agggcgggga
     1561 tcttcggcgg cgcgcccagg cgcagcaccg cttcccacga cagcgcgccg gcgaagccga
     1621 ccagcagcag cgcgttggcg agcggcgaga gcagcgtcgc ccgccgccag ccataggtgt
     1681 ggcgctcggt cggcggctgc cgcgccagca ccgccgcgcc ccaggccagg ccgaggccga
     1741 gcacgtcgcc gaggttgtgc agcgcatccg acagcagcgc gagcgaatcg gtggagaagc
     1801 cgtaccacgc ctcgacgatg gtgtaggcga ggttgatcag ggtcaccgcc gcgaacgcgc
     1861 gggtggccga gccggcgtgc gaatgcgcgt ggtggtggtc gtcgtggtgg tgcgcgtgca
     1921 tgggcgggga ccgggcgcgc ggcgtcgttt cccgcggcgt cgtgaggagg ctcaggtgcc
     1981 gtcgcggccc tgcaccaggg tgccgatggt ctcgccgcgc aggatgcgca gcagcacgcc
     2041 gggctgcgac atgtcgaaga tgcgcagcgg caggtcgctg tctcggcaca gggcgaaggc
     2101 ggcggtgtcc atcacctgca ggtcgcgcgc gatgacctcg tcgtagctga ggcggtcgta
     2161 gcgcaccgcg ccggggaact tcttcggatc cctgtcgtac acgccgtcga ccttggtcgc
     2221 cttcagcagc aggtcggcgc cgatctcgat cgcgcgcagg gcggcgcccg aatcggtggt
     2281 gaagaacggg ttgccggtgc cggcggcgca gatcacgagg cggccttttt cgagatggcg
     2341 cacggcgcgg cggcggatgt agtcctcgca cacgtcgttg atcttgatcg cgctcatgac
     2401 gcgcgccttg gcgccgagct tctccagcgc atcctgcatc gccagcgcgt tgatcacggt
     2461 cgcgagcatg cccatctggt cgccggtgac gcgatccatg cccccggccg cgaggcccgc
     2521 gccgcggaag atgttgccgc cgccgatgac cagcgcgatc tccgcgccgg cctgctgcgc
     2581 ctcgacgacc tcgcgcgcca gccgcccgat caccttcgga tcgatcccgt agtcctcgtc
     2641 gcccatcaac gcctcgccgg acagcttcag gaggacgcgg cgataggcga gctgggacat
     2701 ggacggctcc ggcggatatc cggacgagtt taccggaatg ccccccggcg cccggcggga
     2761 ttggtgcggt gcggaagaaa gccgcgcctg gccccgaaag ttccccggcc aatggtgatg
     2821 ccggtcacaa attcgtgggc ccgggacgat ccaagggcgt tagggattcg ttacgagagg
     2881 gtcgccagtg agaatcgccc cgggcactta atggggagtg ccttttttct gactggagat
     2941 tttcgtatgc ggaaagtgca tcagtcgttg cgccgcaatg ccctttgcat ggcgctcggc
     3001 ttgaccttgg cctcgggggg cgccttggcg cagagcgccg tgggttcctt gttcggcaag
     3061 gctgcggccg gggccgaggt ttcgatccag aacaccgaga ccggcgcgac gcggcagatc
     3121 acggctgacg ccaatggccg cttcacggct gcccagttgc agccgggcca ctacaaggtg
     3181 accgccgccg gccagagcca ggaggtcgaa gtcgtcgtcg gcaccggtac ctccgtgaac
     3241 ttcgcgcccg cggccgaagg cacggcttcc ctcgagcgca tcgaggtggt cggcaaccgc
     3301 gtcaacccga tcgacgtgtc ctccgtcgag tcgaccacgg tgttctcgca gaagcagatc
     3361 caggcgcttc cggtcgcgcg caacgtcacc gacgtcgccc tgctggcccc gggcacggtg
     3421 cagggcgact ccttcggcgg caccctgaac ctcgcttcgt tcggcggttc gtcggtggcc
     3481 gagaacggct actacatcaa cggcttcgac gtcaccaaca tccgcaactt cctgtcctac
     3541 gccgacctgc cgttcgatgc gatcggttcg cagcagatca agaccggtgg ctacggcgcg
     3601 gaatacggcc gttcgctcgg cggcgtgatc aacctggtga ccaagcgcgg cacgaacacg
     3661 tggacgggtg gcgtcagcgc gtacttcgag ccgcagggcc tgagcgaaag cggcaagaac
     3721 gtccggacgc gcaacgcgga gctggcggcc aacggccagg tctatgaagt cttccgttcc
     3781 gcgaacgaaa actcgtcgat caagtacgac gcgtacgcgg gcggcgcgct ggtcaaggat
     3841 cacctcttct tcttcggaat ggtcgaaggc cagagcgaca agagcgacgt ttacggctac
     3901 gaccagagcc agcacacgtc cgataccagt cccaagggcc tggtgaagct ggactggaac
     3961 atcagcgaca accactcgct ggagttcacc ggcatccaca accggaccac cacccacatc
     4021 gattcgtact tcaacgccca gccgtactcg acgtcgcacg acgacaagtt cgacgacgcc
     4081 aagtacctca atggcggtga cgtctacatc ggcaagtaca ccggccactt caccgacacc
     4141 ttcgacctgt cggtcatggg tggctggctc aagaactaca acaactggcg caccgaggcc
     4201 cctccgggca cggactgccc cgcggcctat gactcgcgga ccggtggcct ggattacatc
     4261 ggcttctgga acccggctgc gttcaccatc caggaccgct cgttcggccc cgagaccgac
     4321 acccgcaagg cgctccgcat cgatgccgac tggcagctcg gcgaccatgc cctgcgcttc
     4381 ggctacgacc acgagaagtt cacctccacc cacgatggcc tgagctattc cggcggcatc
     4441 tactaccgct acttctcgga cacgctggtg cgcgtgcggc actaccagac cgccagcggc
     4501 tcctacaccg tcgagaactc ggcgctgtac gccgaggaca gctggcgcat caacgaccgc
     4561 tggctggcgt acctcggcct gcgttccgag tcgttcgaca acaagaacga cgcgggcgag
     4621 agcttcgtca aggccgacaa cctgatcgcg ccgcgcctgg gcttcgcctg ggacgtcaac
     4681 ggtgactcga ccttcaaggt ctacggcaac gcgggccgct actacatccc ggtggcgtcg
     4741 aacaccaaca tccgcgcctc cggcttcgag gcgttgacca cggagttcta caactacagc
     4801 gggatcgatc cggtgaccgg cgcgccgatc accctcggca cgcggacgtc cgggccgttc
     4861 atcaacggca gcctgacggc tccggacccc cgcacggtgg cggacaccaa cctcaagccc
     4921 atgtaccagg acgagttcat cctcggtgcg cagtggctga tgggcggcga ctggaccttc
     4981 ggcgtcaagg ccatccaccg ccaggtcaag aacggcatgg atgactactg ctcgcacgcc
     5041 gccttcgcca actgggcagc cgacaacggc tacacgaact tcgacccgtc gacgatggcg
     5101 acctgcatca tcgtcaaccc gggcaaggac gtgaacgtcg cgctggacct ggagaacgac
     5161 ggcaactaca gcgtcgtgac ggtgccgaac agctacctgc agctgccgaa gtaccagcgc
     5221 aagtacaacg cgctggagtt cacggcggaa cggccgaagc aggatggctg gtacatgcag
     5281 ggttcgtaca cctacgccaa gagcaccggc aacgtcgagg gctacgtcaa ctccagcctc
     5341 gagcaggaag acgcgggcct gacccaggac ttcgacaacc ggtacttcga ggacggtgcg
     5401 aacggttcgc tgccgaacga tcgccgtcat acgctgaagc tgttcggcac gtatgacatc
     5461 ggcgaccagg tgaccctgag cggcaacttc ctcctgcagt ccggccgccc ggtcaactgc
     5521 cagggctacg tgccgctcga gcagctcgat ccgctcgacg cccaggacct cgaggcgtat
     5581 tccgcttcga gcttctactg cctgaccaag accggtacgt tcgaggacac cgtcgatggc
     5641 gtccgccagc tgaccccgcg aggcagcttc ggccgcactc cgtggatcca ccgcttcgac
     5701 ctgggcgtgt cgtaccggcc gcattgggcc aacgaccagc tcgaactgcg catggacgtg
     5761 ttcaacgtct tcaattcgca gaaggtcacc gagcgcaacg aagccggcga gctggtccgc
     5821 cagaccgacg acaacgacat cgacggcgac ggcaacacga gcgagttcta ctaccgcgtg
     5881 aacccggact tcctcaacga cgtcaattac caggcgccgc gttacgtccg tttcaccgct
     5941 cgcttcaagt ggtaacctga gatccaccgt ggtacggaaa ggccgcctcc gggcggcctt
     6001 tcttttgcag gagacgacgg acgccatgtc gttcgaaagg cgttgggcgc gcgccctggc
     6061 ccatttccag gacgggaacc atgccgccgc ccgggtggcg tgcgaggcgt tgacccggga
     6121 gcggccccgc gatgccggcg tgcactggat gttgtccacc atcgcccagg cgggtggcgg
     6181 gttcaggtcg tcggtgcggc atgcgcgcct ggcggtcgcc gactgggacc ggctgcccgc
     6241 gatgcagcgc ctggcgctcg tccgccgcct catttcggtc ggcgattacc aggcggcggt
     6301 cggctacctg gaatcgattc cggtggtcga ccccggcccg ccctgcatcg gcgagatcat
     6361 cgagcaggct gcgatgctcg acgcgcacgt gctggcggga cgatggctgg acgccgctgc
     6421 cgcctggggc caccgcagtg cgcaactggc gttcctgcgg ggcaaccacc gcaagttcac
     6481 cggtgacatc gaaggggcag cgacggccta tgaagaggcg atcgccttgt cgccggtaga
     6541 cgggcacgcg ctccatgccc tcgcggagtt gcagttgaag gacggtgcgg ggcggcgggt
     6601 ggaccgcctg cggcgggtca tcgaagcagg ggcagcggcg cccgacagcc tggtcgccgc
     6661 gaactatgga cttttccgcg aactcgaccg gttgggagac acggcgggcg cgtgggaggc
     6721 gctggcgcgg ggcatgcggc tcaagcgaag tgccgcacgg catgacccgg atgcggaacg
     6781 ggccatgttc gccgccctct ccgacgcatt gcaggcgatg ccccgggcgg cggccgccga
     6841 cggaggcccg gtcccggttt tcatcctcgg cctgccgcgg accggcacca cgctcgtgga
     6901 acgcatgctc ggcaaccatc ccgacgtggc ggcctgcggc gaactgagcg agttgcggat
     6961 gcgctgcaag ttcgccagcg accactactg cgccggtgtc atggatgccg aaggggcgcg
     7021 ccgcctggtg gggatcgacc cggccgccgt cggcagcgag tacctggccc acgtggcctg
     7081 gcgcatcggc gacaggggct ggttcaccga caagcatccc ggcaatgccc tgctggcggg
     7141 cgtcatcctg cgcgcgttgc cgcaggcgcg ggtggtgtac gtccggcgca atgcgatgga
     7201 cgcgtgcttt tccaacctca aggccctgtt cgcgcccggc tactacgagt acagctacga
     7261 catcaccgac gtcgcggtcc attaccgccg gcatgcgcgg tggatgcggc aggtcgtcga
     7321 agcgtccggc gaccgggtgc tggaggtcga ctacgaggcg ctggtcgagg atcccgaacg
     7381 gcaggtcgcc aggatcgtcg cgcactgcgg cctgccccgg gcggaaggcc tgacggacct
     7441 ggcccgcaac gcgagcgccg tttcgactgc cagcagcgtg caggtgcggg acgccatcta
     7501 ccgcacgggc gtggatgcct ggcagcgcta ccggtcttgg ctcgcgccac tggaggccct
     7561 gctggccgac gcggggcagg catgaaaaag gc
//
LOCUS       DATIQC010000059         3346 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_180486, whole genome shotgun sequence.
ACCESSION   DATIQC010000059 DATIQC010000000
VERSION     DATIQC010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180486"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VLM17_01225"
     CDS             <1..437
                     /locus_tag="VLM17_01225"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64211.1"
                     /translation="HDGYLTLDEMHAMHANRGNAMQSGMQAGHDHEAGASANAAAGKP
                     AMAGMGHDDQMPASGGMHHDMMDDRFKSMDADGDGRLSAAEHAAGAAKMFTTADTNQD
                     GSVSRAEFDAAHASMMGDHMHEEGMHEDKDHDHDRDDQPAHP"
     gene            451..1113
                     /locus_tag="VLM17_01230"
     CDS             451..1113
                     /locus_tag="VLM17_01230"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019172 - glyoxalase III activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HSR64212.1"
                     /translation="MAAVLMLVTSADRMPDGQPTGLWLEEFATPWQVLRAGGHAVTAA
                     SPRGGAAPVDPRSREDAREHPQWAEAERVLRTTAPLAGQRAADYDALFIAGGHGTMFD
                     FPDNPALGALLRDFHAQGKPVAAVCHGPAAFVGATAADGRPLVAGRTLTAFSDDEERA
                     VKLEHAVPFLLSERLGALGAQVENGPAFAPNVRRDGWLITGQNPMSSAGAADLLVEAL
                     RG"
     gene            1156..1473
                     /locus_tag="VLM17_01235"
     CDS             1156..1473
                     /locus_tag="VLM17_01235"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSR64213.1"
                     /translation="MTTTTDKRASPRLRTLTAVMVSPNGHAHDAQVLDLSLGGARLRL
                     PQDWAPRDGAHLRIFFLQDTDNAITLEGQVTRVAVDHMGVAFDPAQEAQVRELFDAIG
                     AGL"
     gene            complement(1496..2074)
                     /locus_tag="VLM17_01240"
     CDS             complement(1496..2074)
                     /locus_tag="VLM17_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64214.1"
                     /translation="MKRSILVLATASAMLGLLPSALAEGKTKPSAPKPRDDHALVASA
                     TQAAPQAVAGDAAVIDVGADGKMRSVREGHNGFTCMADNPETPGPDPMCMDGNAMAWV
                     NAWLAHQPPPGGKVGLMYMLKGGTDASNVDPYAQKPTASNHWISTGPHVMVVGADDSF
                     YAQYPKSADPKTGAPYVMWAGTPYQHLMVPVK"
     gene            2259..2501
                     /locus_tag="VLM17_01245"
     CDS             2259..2501
                     /locus_tag="VLM17_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64215.1"
                     /translation="MTRSTRNRGSGEDASTRDAGTASAPHQPLRRPGDAVEMDDALHR
                     AGLSDRGASVQDHLRDRDSKGVADGYDDSIDRHGAH"
     gene            complement(2523..2897)
                     /locus_tag="VLM17_01250"
     CDS             complement(2523..2897)
                     /locus_tag="VLM17_01250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007511662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSR64216.1"
                     /translation="MQFLMLIYTDPQLLEALPDGEFDAWMRGCIRKADALRADGRLLA
                     SQQLEAPATAKSLRVRQGRETVLDGPFAETKEVLAGFNLVEADSLDEAMELARAFPWS
                     RTGCIEVRPVRDFEGVRRRVGA"
     gene            3109..>3346
                     /locus_tag="VLM17_01255"
     CDS             3109..>3346
                     /locus_tag="VLM17_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSR64217.1"
                     /translation="MRVMVMVKATPQSEAGELPSLALWEAMDRFNEELVKAGVLLTAD
                     GLKPSRAGVRVRFEGRQRSVVDGPFAETRELVAGF"
BASE COUNT          469 a         1216 c         1224 g          437 t
ORIGIN      
        1 accacgacgg ctacctcacc ctcgacgaga tgcatgccat gcacgctaat cgcggcaacg
       61 ccatgcagtc gggcatgcag gcgggccacg accacgaggc cggcgcgtcc gcgaacgccg
      121 ccgccggaaa gccggcgatg gccggcatgg ggcacgacga ccagatgccc gccagtggcg
      181 gcatgcacca cgacatgatg gacgaccgct tcaagtcgat ggatgccgac ggcgacggcc
      241 ggctgtccgc cgccgagcac gccgccggcg cggcgaagat gttcacgacg gccgacacca
      301 accaggacgg ctcagtgtcg cgcgccgagt tcgacgctgc ccatgcgtcg atgatgggcg
      361 accacatgca cgaggaaggc atgcacgagg acaaggatca cgaccacgac cgcgacgacc
      421 agccggcgca tccgtgagcg gggcggggcg atggccgccg tcctgatgct ggtcacgagc
      481 gccgaccgca tgcccgacgg ccaaccgacc gggctgtggc tggaggagtt cgcgacgcca
      541 tggcaggtgc tgcgcgcggg cgggcacgcg gtcaccgcgg ccagtccgcg cggtggcgcc
      601 gcgcccgtgg atccgcgttc gcgcgaggac gcgcgggagc atccgcagtg ggccgaagcc
      661 gaacgggtgc tgcggacgac ggccccgctg gccgggcagc gcgccgccga ttacgacgcg
      721 ctgttcatcg ccggcggcca cggcaccatg ttcgatttcc cggacaaccc ggcgctgggc
      781 gcgctcctgc gcgatttcca cgcccagggc aagcccgttg ccgcggtctg ccacgggccc
      841 gccgcgttcg tcggcgcgac cgccgccgat ggccggccgc tggtcgcggg ccgcacgctg
      901 accgcgttct ccgacgacga ggagcgcgcc gtcaagctcg agcacgcggt gccgttcctg
      961 ctgtccgagc gcctcggcgc cctcggcgcc caggtcgaga acggcccggc gttcgcgccc
     1021 aacgtgcggc gcgacggctg gctgatcacc gggcagaatc cgatgtcgag cgcgggcgcg
     1081 gccgacctgc tggtggaagc cctgcgcggc tgaatcctca cctcgcctcc cgccgctgcc
     1141 gctagcatcg cccccatgac gaccacgacc gacaaacgcg cctcgccgcg cctgcgcacg
     1201 ctcaccgccg tgatggtgtc gcccaacggc cacgcgcacg atgcgcaggt gctcgacctg
     1261 tcgctcggtg gcgcgcgcct gcggctgccg caggactggg ccccgcgcga cggcgcccac
     1321 ctgcgcatct tcttcctgca ggacaccgac aacgcgatca ccctcgaagg gcaggtgacg
     1381 cgggttgcgg tcgaccacat gggcgtggcc ttcgatcccg cgcaggaagc gcaggtgcgc
     1441 gaactgttcg acgcgatcgg cgccgggctc taggcgccga ccgcagccgc ggccatcact
     1501 tcaccggcac catcaggtgc tggtacggcg tgcccgccca catcacgtac ggcgcgccgg
     1561 tcttcgggtc cgcgcttttc gggtactgcg catagaagct gtcgtcggcg ccgaccacca
     1621 tcacgtgcgg gccggtgctg atccagtggt tgctggcggt gggcttctgc gcgtacggat
     1681 cgacgttgct ggcgtcggtg ccgcccttga gcatgtacat caggccgacc ttgccgcccg
     1741 gcggcggctg gtgcgccagc caggcgttga cccaggccat ggcattgccg tccatgcaca
     1801 tcgggtcggg cccgggcgtt tccgggttgt cggccatgca ggtgaaaccg ttgtggccct
     1861 cgcgcacgga gcgcatcttg ccgtcggcgc cgacgtcgat gaccgcggca tcgcccgcca
     1921 ccgcctgggg cgcagcctgc gtggcgctgg cgacgagggc gtggtcgtcg cgcggcttcg
     1981 gtgcggacgg cttggtcttg ccctcggcca gcgcggaggg cagcaggccc agcatggcgc
     2041 tggccgtggc gaggacgagg atggaacgct tcatggcggg gctccttgac gcggtgcgcg
     2101 ccccctccgc accgccggtc ggtggccggc gtgcagtgcc ggcacgggtg taacgcgggc
     2161 gcggcggcgg cacggacacg gcagcgatga atgcgcgcgc gtggcgcgcc ggtcacgccg
     2221 gcggtgcgac gctgctcttc ccgcccgcag gaggacgcat gacccgatcc acccgcaacc
     2281 gcggcagcgg cgaagacgca tcgacccgcg acgccggcac cgccagcgcg ccgcaccagc
     2341 cgctgcggcg ccccggcgac gccgtcgaga tggacgacgc gctgcaccgg gccggcctgt
     2401 ccgaccgtgg cgcctcggtg caggaccacc tgcgcgaccg cgacagcaag ggcgtggccg
     2461 acggctacga cgattcgatc gaccgccacg gcgcgcacta gcgcgccgcc accgcgccgc
     2521 gctcaggcgc cgacgcggcg gcgcacgccc tcgaaatcgc gcaccggccg cacctcgatg
     2581 cagccggtgc gcgaccacgg gaacgcgcgt gccagctcca tcgcctcgtc gaggctgtcg
     2641 gcctcgacca ggttgaagcc ggccagcacc tccttggttt cggcgaacgg gccgtcgagc
     2701 accgtctcgc ggccctggcg cacgcgcagc gacttcgcgg tggccggtgc ttccagctgc
     2761 tgggaggcga gcagccggcc gtcggcgcgc agcgcatcgg ccttgcggat gcagccgcgc
     2821 atccaggcgt cgaactcgcc gtcgggcagg gcctcgagca gctgcgggtc ggtgtagatc
     2881 agcatcagga actgcatggg ctcgctccgt ggagtgccgg gccggcttgg cggcgcgtcc
     2941 atccaatgat ggcagggcgg gcccgccggc ggtggccggc ctttccggcg cgcggccggt
     3001 gcgggcgtgc caaaaaactg caggcggtct gtcgattccg gcccgcgtcg ttcgtcgtcc
     3061 ggactgggag cgcgcaaacc gcccgctccg cggcgaagga gaacgacgat gcgcgtgatg
     3121 gtgatggtga aggccacccc gcagtccgag gcgggcgagc tgccgagcct ggcgctgtgg
     3181 gaggcgatgg accggttcaa cgaggaactg gtcaaggccg gcgtgctgct caccgccgac
     3241 ggcctgaaac cgagccgcgc cggcgtgcgc gtgcgcttcg agggcaggca gcgcagcgtg
     3301 gtcgatggcc cgttcgccga gaccagggag ctcgtcgccg gtttct
//
LOCUS       DATIQC010000060         9769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_321974, whole genome shotgun sequence.
ACCESSION   DATIQC010000060 DATIQC010000000
VERSION     DATIQC010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9769
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321974"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..398
                     /locus_tag="VLM17_01260"
     CDS             <1..398
                     /locus_tag="VLM17_01260"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HSR64218.1"
                     /translation="LLGGGADDEPSEAEIARRELIARGIAGDAPLHLEGKSRDTLQNL
                     RNARELLSGATLPRVALLSNRYHLARCALFARQLGFDWELCAAEARLRLTPRTLLRLA
                     GEAGYVCWVDLGTRWARLIGHRRMLARVT"
     gene            complement(494..2284)
                     /locus_tag="VLM17_01265"
     CDS             complement(494..2284)
                     /locus_tag="VLM17_01265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007973438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HSR64219.1"
                     /translation="MRPLLLALSIAAVLAAPQPSPAAPAAAKTTPAHAAPAWVAKSNQ
                     YAQILLRAQGPFQPEQLSFLGVPGYDEQVFDFGPGYQARYREAMQKAKAELVAKSAGE
                     TDADVRQDIAILTRAADDAIEASAVNERLVRPFADVGQTVFSGLQGLLNDQTQPERRA
                     LALKRLQRYAGLAPGSTPLAALARQRYEERNDPKLLQPTQVEVQQSLDNEATYVKGIR
                     QLFAKYGIDAGAAADALQKQLDDYAAWTRASVLPHARTTYSLPRELYALQLKNVGIDI
                     DPRALLERAQLEFMETRAAMQQLAPLVAREKGLKATDTIGVIRELKAHQLPNDQIEPF
                     YRNTILPALDRIIATNRIVTLPNRPMQMRLGSDAENAAQPAPHFLPAPLVGNTGQQGT
                     FVLPLGNPNAKGGGAYDDFNYPSAAWTLTAHEGRPGHELQFTAMIERGVSLARTLFAF
                     NSVNVEGWALYAEAETVPYEPLDGQLIALQFRLLRAARAMLDPMLNLGLTDRDTALKV
                     LTDQVGFSQAMARQEIDRYTVNSPGQAGSYFYGYSRIEQLRAETELALGDRFDRKAFN
                     DFLLDQGLLPPELLAKAVRERFIPARKATR"
     gene            2415..4736
                     /locus_tag="VLM17_01270"
     CDS             2415..4736
                     /locus_tag="VLM17_01270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007081326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HSR64220.1"
                     /translation="MADLRPRLLGAALLCTVLPVFAAAPMPALTADDYARAERFVGYH
                     ANPLVDHAVNAVTWLDAGSFWYRDHDAHGDRFLRYELATGTVSPLVDAQALADALAKT
                     AGKPVDATRLKITEARIAADGGYEVVVGKDRYLCGASGKPGCVLAPKPGHVGEEPGVR
                     SPDGRSEAFIRDWNLWLRDLASGAETQLTTDGATDYGYATDNAGWTHSDRAILVWSPD
                     SRRIATFRQDQRRTGSMTLVGTGVGRPKVETWKYPLVGDQDLTMIERVVIDVRTRSVL
                     HLRTPPDQHRSTLCDDVSCDGGWEDVQWADDGRSLAFASVSRDHKDVWIRIADTASGA
                     VRTVLHEHVPTYYESGNGAVNWRYLPQSHELLWFSERNDWGNLYLYGLDGTLKHAVTT
                     GEGNVTEVLRVDPKTRTLWFRGVGRTRGVDPYYQQFFKASLDGGAPVLLAPEAADHAI
                     SLSPDGAHFVDAYSTPATPPVTVLRDANDGRVVAEIARADVTRLRAIGWVPPEAFTVK
                     ARDGSTDLYGLLFKPTRFDPAKKYPVIDYIYPGPQTGSVGGRGFDAARRDHQALAELG
                     FVVVAIDGLGTPWRSKTFHDAFDGDIGDNTLPDQVAGLKQLAARHPWIDLDRVGVWGH
                     SGGGYATADAMFSYPDFFKVGISESGNHDNRNYEDDWAEKWQGLETVDADGRSSYAAQ
                     ANAGKAANLKGRLMLAHGLMDDNVPPQNTFLVVDALVKANKDFDLVVFPQARHGYGKD
                     AAYMMRRRWDYFVRWLLGATPPREYAMHPPAGE"
     gene            complement(4777..5466)
                     /locus_tag="VLM17_01275"
     CDS             complement(4777..5466)
                     /locus_tag="VLM17_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione binding-like protein"
                     /protein_id="HSR64221.1"
                     /translation="MIDLHYWPTPNGHKITLFLEESGLAYRIVPVDIGRGAQFAPAFL
                     AISPNGRMPAIVDTAPADGGAPVSLFESGAILLYLAEKTGRFLPADLRGRATVLSWLF
                     WQVGGLGPMTGQYGHFRVYAPEPVDYAIERYTREAQRLLGVLEHRLAGRAFIAGDGYT
                     IADMACYPWIDPYGRAPLDLAPFPEVRRWRDAIAARPATQRAYALTGQVNPKAGQPMG
                     EDEKRVLFGPR"
     gene            5635..8718
                     /locus_tag="VLM17_01280"
     CDS             5635..8718
                     /locus_tag="VLM17_01280"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR64222.1"
                     /translation="MHHRSETTPQVDGRATARAGWAWALLGGCVLAALWPAWPPLAAR
                     LLALACALAAVAIAVRCRRLQRRAAADYVRGEATLAEAGERLRETRRIARIGEFRWEL
                     DGGRVRWSEETFVLYGQPPRPELHVDEILGWLHADDRAGVADAIGRAMHAPDPGADPP
                     GHAFEARFRVVRPDGEVRTLHALAEWLDRTPGRRVLRGIQQDITELARTDEKLAAAQA
                     QYQFLFEHNPLPMWVFDRETLRFLAVNDAMLRHYGYERAELLAGTMLDIRPAEQRAAV
                     EAAARQPGAQRPQGEAWTHLRKDGSTLRAAIYNHDIVFDGRRARLVAAQDVTGLERSE
                     ERFRMVARATSDAVYDWDVVSGHLWWSDSFYALFGHSRQAMPPTLEAWESLIHADDRA
                     RVMASLSRAFEAGQQEWEEQYRFGRGDGSWAEVADRGFIQRDELGQVVRMVGGMLDVT
                     ERHREQADLRLLRRAVDATDNGIVIADARSDDQPIVYVNPAFEQITGYASAEIAGRNC
                     RVLHGVDGDQPGVAAIRNAMHEERETRVVLRNYRRDGTMFWNEFRLAPVRDEAGALTH
                     FVGVLTDVTERQRQEEQLAWRATHDDLTGLPNRQLLHDRLQHAILNAERYGRAAAVVF
                     VDLDDFKLINDTLGHSAGDTALRTIAQRLREVVRDADTVGRFGGDEFVVVLTEHTDEA
                     GVQAVIARIAAALAQPVELAGVPHLLTPSIGHCRYPQDGRDAETLLRHADLAMYQAKR
                     QGRNRAVAYRAEFDGTVSQRLQLVSQLRDGLQRDEFVLAFQPLWGLAGEPRGLEALVR
                     WRHPERGLLPPSDFIGVCEESGLIVELGRRVLREAARHHALLAATGLGHLRIAVNVSA
                     AQFAHDLHGEVAAVVAEFALPPGALEIELTESVIMDNTDRAIDTMRRIAELGVGLSLD
                     DFGTGYSSLAYLKRLPLDRLKIDRSFVQDLGHDLEDAAICASIIGLGHLLGLRTVAEG
                     VETEQQCAWLRARGCDELQGFLLGRPMAFDALLPLLQAARVAGGDDIAAQPDIAR"
     gene            8802..9572
                     /gene="xth"
                     /locus_tag="VLM17_01285"
     CDS             8802..9572
                     /gene="xth"
                     /locus_tag="VLM17_01285"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HSR64223.1"
                     /translation="MKIASWNVNSLNVRLPHLTRWLQAAAPDVVALQETKLEDERFPD
                     TALAALGYRSVFAGQKTYNGVAILARDAAIEDVQVGIPGFEDPQRRVIAATVGGVRVV
                     DFYVVNGQAVGSAKFDYKLQWLAAARAMLADELARHPRLVVLGDFNIAPADLDVHDPK
                     RWREKILCSTPEREALAGLTTLGLHDSFRLHHAEGGHHSWWDYRLGAFERGWGLRIDL
                     LLASDALRPACTAAGIDLVPRGWERPSDHTPVWAEFDA"
     gene            complement(9684..9764)
                     /locus_tag="VLM17_01290"
     CDS             complement(9684..9764)
                     /locus_tag="VLM17_01290"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSR64224.1"
                     /translation="MSLVVSLIGAIILLAIVNLFRRGRVR"
BASE COUNT         1375 a         3517 c         3524 g         1353 t
ORIGIN      
        1 tgctgctcgg cggcggcgcc gacgacgagc cgagcgaggc cgagatcgcc cgccgcgaac
       61 tcatcgcgcg cgggatcgcc ggcgacgccc cgctgcacct ggagggcaag tcgcgcgaca
      121 ccctgcagaa cctgcgcaac gcgcgcgagc tgctgagcgg cgccacgctg ccgcgcgtgg
      181 ccctgctcag caaccgctac cacctcgccc gctgcgcgct gttcgcgcgc cagctcgggt
      241 tcgactggga gctgtgcgcg gccgaagcgc gcctgcgcct caccccgcgc accctgctgc
      301 gcctcgccgg cgaggccggc tacgtctgct gggtcgacct cggcacgcgc tgggcgcggc
      361 tgatcgggca ccgccggatg ctggcgcggg tgacctaggc gggcgaggtg tccgcgcgcc
      421 cgggtgccgg tcgaatcctt cccggggtcg tcgccggagc ggcttgcgcc gctcctcgtt
      481 gcccggcgcg ccgttaccgg gtcgccttgc gcgcggggat gaagcgctcg cgcaccgcct
      541 tcgccagcag ctccggcggc agcaggccct ggtcgagcag gaaatcgttg aaggccttgc
      601 ggtcgaagcg gtcgccgagc gcgagctcgg tttccgcgcg cagctgctcg atgcgcgagt
      661 agccgtagaa gtagctgccg gcctggcccg gggaattcac cgtgtagcgg tcgatttcct
      721 ggcgtgccat cgcctgcgag aacccgacct ggtcggtcag caccttcagc gcggtgtcgc
      781 gatcggtgag gccgaggttg agcatcgggt cgagcatcgc gcgcgcggcg cgcagcaggc
      841 ggaactgcag cgcgatcagc tggccgtcga gcggctcgta gggcaccgtc tcggcttcgg
      901 cgtacagcgc ccagccctcg acgttgaccg agttgaacgc gaacagcgtg cgcgccagcg
      961 acacgccgcg ctcgatcatc gcggtgaact gcagctcgtg gcccggccgg ccctcgtgcg
     1021 cggtgagcgt ccacgcggcc gacggatagt tgaagtcgtc gtaggcgccg ccgcccttgg
     1081 cgttcgggtt gcccagcggc agcacgaagg tgccctgctg gccggtgttg ccgaccagtg
     1141 gcgccggcag gaaatgcggc gccggctgcg cggcgttctc ggcgtcgctg cccaggcgca
     1201 tctgcatcgg ccggttgggc agggtgacga tgcggttggt cgcgatgatg cggtccagcg
     1261 ccggcaggat ggtgttgcgg tagaacggct cgatctggtc gttcggcagc tggtgcgcct
     1321 tgagctcgcg gatcacgccg atggtgtcgg tggccttcag gcccttctcc ctggccacca
     1381 gcggcgccag ctgctgcatc gccgcgcgcg tctccatgaa ctccagctgc gcgcgctcga
     1441 gcagcgcgcg cgggtcgatg tcgatgccga cgttcttcag ttgcagcgcg tagagttccc
     1501 gcggcagcga ataggtggtg cgcgcatggg gcagcacgct cgccctggtc cacgcggcgt
     1561 agtcgtcgag ctgtttctgc agggcgtcgg ccgcggcccc ggcgtcgatg ccgtacttgg
     1621 cgaacaactg gcggatgccc ttgacgtagg tcgcctcgtt gtcgagcgac tgctggacct
     1681 cgacctgggt cggctgcagc agcttcggat cgttgcgttc ctcgtagcgc tggcgcgcga
     1741 gcgcggccag cggcgtactg cccggggcaa ggccggcgta gcgctgcagg cgcttgagcg
     1801 cgagcgcgcg gcgctcgggc tgggtctggt cgttgagcag gccctgcagg ccggagaaca
     1861 cggtctggcc gacgtcggcg aacggccgca ccaggcgctc gttgaccgcg ctggcctcga
     1921 tcgcatcgtc cgccgccctg gtcaggatgg cgatgtcctg gcgcacgtcg gcatcggttt
     1981 cgcccgccga tttcgcgacg agttcggcct tcgccttctg catcgcctcg cggtagcgcg
     2041 cctggtaacc cggaccgaag tcgaacacct gttcgtcgta gcccggcacg ccgaggaagg
     2101 acagctgctc gggctggaac gggccctgcg ccctgagcag gatctgcgcg tactggttgc
     2161 tcttcgccac ccacgccggc gcggcgtgcg caggcgtggt cttcgcggcg gccggcgcgg
     2221 ccggcgaagg ctgcggcgcg gcgaggacgg cggcgatcga cagcgcgagc agcagcggac
     2281 ggatcttcat cggcagtctc ctggggaagc ggcgagcatc ggcgggcagg ccccgcgcgc
     2341 catgcgccaa aggtcacggc ggcgcgcgcg gcgggatcgc ttagcatgcg ccttccttcg
     2401 ccacgctccc gcccatggcc gaccttcgcc cgcgcctgct cggtgccgcc ctgctgtgca
     2461 ccgtcctgcc cgtcttcgcc gccgccccga tgcccgcgct caccgccgac gactacgccc
     2521 gcgccgaacg cttcgtcggc taccacgcca acccgctggt ggaccatgcg gtcaacgccg
     2581 tcacctggct cgacgcgggc agcttctggt accgggacca cgatgcgcac ggcgaccgtt
     2641 tcctgcgcta cgagctcgcg accggcacgg tgtcgccatt ggtcgatgcg caggcgctcg
     2701 ccgatgcgct ggcgaagacc gccggcaagc cggtcgacgc gaccaggctg aagatcaccg
     2761 aggcgcgcat cgccgccgac ggcggctacg aagtcgtggt cggcaaggac cgctacctgt
     2821 gtggtgcgtc cggcaagccg ggctgcgtgc tggcgccgaa gcccgggcac gtcggcgagg
     2881 agcccggcgt gcgttcgccc gacggcagga gcgaagcctt catccgcgac tggaacctgt
     2941 ggctgcgcga cctcgccagc ggcgcggaaa cccagctcac caccgatggc gcgaccgact
     3001 acggctacgc caccgacaac gccggctgga cccattcgga ccgcgccatc ctggtgtggt
     3061 cgcccgattc gcgccgcatc gcgacgttcc gccaggacca gcgccggacc ggctcgatga
     3121 ccctggtcgg caccggcgtc ggccgtccca aggtcgagac ctggaagtac ccgctggtcg
     3181 gcgaccagga cctgaccatg atcgagcgcg tcgtcatcga cgtgcgcacg cgcagcgtgc
     3241 tgcacctcag gacgccgcca gaccagcacc ggtcgaccct gtgcgacgac gtcagctgcg
     3301 acggcggctg ggaagacgtg cagtgggccg acgacggcag gtcgctcgcc ttcgcctcgg
     3361 tctcgcgcga ccacaaggac gtctggatcc gcatcgccga caccgcgagc ggcgcggtgc
     3421 gcaccgtgct gcacgagcac gtgccgacct actacgaatc cggcaacggc gcggtcaact
     3481 ggcgctacct gccgcagtcg cacgagctgc tgtggttcag cgagcgcaac gactggggca
     3541 acctctacct gtacggcctc gacggcacgt tgaagcacgc ggtgaccacc ggcgaaggca
     3601 acgtcaccga agtgctgcgc gtggatccga agacgcgcac gctgtggttc cgcggcgtcg
     3661 gccgcacgcg gggcgtggat ccctactacc agcagttctt caaggcctcg ctggatggcg
     3721 gcgcgccggt gttgctcgcg ccggaagcgg ccgaccatgc gatcagcctg tcgcccgacg
     3781 gcgcgcactt cgtggatgcg tactcgacgc cggccacgcc gccggtgacg gtgctgcgcg
     3841 acgcgaacga cggccgcgtc gtcgcggaaa tcgcccgcgc cgacgtcacg cggctgcgcg
     3901 cgatcggctg ggtgccgccg gaagctttta ccgtcaaggc acgcgacggc agcaccgacc
     3961 tgtacggcct gctgttcaag ccgacccgtt tcgacccggc gaagaagtat ccggtcatcg
     4021 actacatcta cccgggtccg cagaccgggt cggtcggtgg ccgcggcttc gacgccgcgc
     4081 gccgcgacca ccaggcgctg gccgagctcg gcttcgtcgt cgtcgccatc gacggcctcg
     4141 gcacgccgtg gcgctcgaag accttccacg acgcgttcga cggcgacatc ggcgacaaca
     4201 ccctgcccga ccaggtggcg ggactgaagc agctggccgc gcgccatccg tggatcgacc
     4261 tcgaccgggt cggcgtctgg ggccattccg gcggcggcta cgcgaccgcc gatgcgatgt
     4321 tcagctatcc cgacttcttc aaggtcggca tcagcgagag cggcaaccac gacaaccgca
     4381 actacgagga cgactgggcg gagaagtggc agggcctgga gaccgtcgat gccgacggcc
     4441 gcagcagcta cgcggcgcag gccaacgccg ggaaggcggc caacctcaag ggccggctga
     4501 tgctcgccca cggcctgatg gacgacaacg tgccgccgca gaacaccttc ctcgtggtcg
     4561 acgcgctggt gaaggcgaac aaggatttcg acctcgtcgt gttcccgcag gcgcgccatg
     4621 ggtacggcaa ggacgcggcg tacatgatgc ggcgacgctg ggactacttc gtgcgctggc
     4681 tgctcggtgc gacgccgccg cgcgagtacg cgatgcatcc gcccgcgggc gagtgagcgc
     4741 gggctccgtg ccttcctctc ccgccggcgg gagaggtcag cgcggcccga acagcacccg
     4801 cttctcgtcc tcgcccatcg gctgcccggc cttcgggttc acctgcccgg tgagcgcgta
     4861 cgcgcgctgc gtcgccggcc gcgcggcgat cgcgtcgcgc cagcggcgca cctcggggaa
     4921 tggcgccagg tcgagcggcg cgcggccgta cggatcgatc cacggatagc aggccatgtc
     4981 ggcgatcgtg tacccgtcgc cggcgatgaa ggcgcggccg gcgagccggt gctcgagcac
     5041 gccgagcagg cgctgcgcct cgcgggtgta gcgctcgatc gcgtagtcca ccggttccgg
     5101 cgcgtacacg cggaagtggc cgtactggcc ggtcatcggg ccgaggccgc cgacctgcca
     5161 gaacagccac gacagcaccg tcgcgcggcc gcgcaggtcg gccggcagga agcgcccggt
     5221 cttttcggcg aggtaaagca ggatcgcgcc ggattcgaac agcgacaccg gcgcgccgcc
     5281 atccgcgggg gcggtgtcga cgatcgccgg catccggccg ttcggtgaga tcgcgaggaa
     5341 cgccggcgcg aactgcgcgc cccggccgat gtcgaccggc acgatgcggt aggcgagccc
     5401 gctctcctcg aggaacaggg tgatcttgtg gccgttgggc gtgggccagt agtgcaggtc
     5461 gatcatgcgc gcggttcgcg ggagggacgt gcactgtagc gccgccgcca agcggaacca
     5521 cgaatggcgg cgacgttcct gaaccggttt ccactagcgg cccgaccctt ttcggtagag
     5581 tgcgtgcagg cccgcccgcg ttgcacccgg cgcgcgcggc accggggagc cggcatgcac
     5641 caccgcagcg agacaacgcc gcaggtcgac gggcgcgcaa ccgcccgcgc cggctgggcg
     5701 tgggcgctgc tgggcgggtg cgtgctggcc gcgctgtggc cggcctggcc gccgctggcg
     5761 gcgcgcctgc tggcgctcgc gtgcgcgctc gcggcggtcg ccatcgccgt gcgttgccgg
     5821 cgcctgcagc gacgcgccgc ggccgactac gtgcggggag aggcgacact ggccgaggcc
     5881 ggcgagcgcc tgcgcgaaac gcgccgcatc gcccgcatcg gcgaattccg ctgggaactg
     5941 gacggcggcc gcgtgcggtg gtcggaggaa accttcgtcc tgtacgggca gccaccgcga
     6001 cccgagctgc acgtcgacga gatcctcggc tggctgcacg cggacgaccg cgccggcgtg
     6061 gccgatgcga tcgggcgcgc gatgcacgcg cccgaccccg gcgcggatcc tcccggccac
     6121 gccttcgagg cccggttccg cgtggtccgc cccgacggcg aggtgcgaac cctgcacgcc
     6181 ctcgccgaat ggctggaccg cacgcccggc cgccgcgtgt tgcgcggcat ccagcaggac
     6241 atcaccgaac tggcgcgcac cgacgagaag ctggccgctg cgcaggcgca gtaccagttc
     6301 ctgttcgagc acaacccgct gccgatgtgg gtgttcgatc gcgagacgct gcgcttcctc
     6361 gcggtcaacg acgcgatgct gcgccactac ggctacgagc gcgcggaact gctcgccggc
     6421 acgatgctcg acatccggcc cgcggagcag cgcgccgcgg tcgaggccgc ggcgcggcag
     6481 cccggcgcgc agcgcccgca gggcgaggcg tggacccacc tgcgcaagga cggcagcacg
     6541 ctgcgcgcgg cgatctacaa ccacgacatc gtcttcgacg gccgccgcgc gcggctggtc
     6601 gcggcgcagg acgtcaccgg gctggagcgc agcgaggagc gcttccgcat ggtcgcgcgg
     6661 gcgaccagcg acgcggtgta cgactgggac gtggtcagcg gccacctgtg gtggagcgat
     6721 tcgttctacg cgctgttcgg gcactcgcgg caggcgatgc cgccgacgct ggaggcatgg
     6781 gaatcgctga tccacgcgga cgaccgcgcg cgggtgatgg cgagcctgtc gcgcgccttc
     6841 gaggccgggc agcaggagtg ggaggagcag taccgcttcg gtcgcggcga cggcagctgg
     6901 gcggaggtgg ccgatcgcgg cttcatccag cgcgacgagc tcggccaggt cgtgcgcatg
     6961 gtcggcggca tgctcgatgt caccgagcgc caccgcgagc aggccgacct gcgcctgctg
     7021 cggcgcgcgg tcgacgccac cgacaacggc atcgtgatcg ccgacgcgcg cagcgacgac
     7081 cagccgatcg tgtacgtcaa tccagccttc gagcagatca ccggctatgc ctccgccgag
     7141 atcgccggcc gcaactgccg ggtgctgcat ggcgtcgacg gcgaccagcc gggagtggcg
     7201 gcgatccgca acgcgatgca cgaagagcgc gagacccggg tggtgctgcg caactaccgt
     7261 cgcgacggca cgatgttctg gaacgagttc cgcctcgcgc cggtgcgcga cgaagccggc
     7321 gcgctgaccc atttcgtcgg cgtgctcacc gacgtcaccg aacgccagcg ccaggaggag
     7381 cagctcgcct ggcgcgccac ccacgacgac ctcaccggcc tgcccaaccg ccagctgctg
     7441 cacgaccgcc tgcagcacgc catcctcaac gccgagcgct acggccgcgc ggcagcggtg
     7501 gtgttcgtcg acctcgacga cttcaagctg atcaacgaca ccctcggcca cagcgccggc
     7561 gacacggcgc tgcggacgat cgcccagcgc ctgcgcgagg tggtgcgcga cgccgacacc
     7621 gtcggccgct tcggcggcga cgaattcgtg gtcgtgctga ccgagcacac cgacgaggcc
     7681 ggcgtgcagg cggtgatcgc gcgcatcgcc gcggcgctgg cgcagccggt cgagctcgcc
     7741 ggcgtgccgc acctgctcac cccgagcatc ggccactgcc gctatccgca ggacgggcgc
     7801 gacgcggaga cgctgctgcg ccacgcggac ctggcgatgt accaggccaa gcgccagggg
     7861 cgcaatcgcg cggtcgccta ccgcgccgag ttcgacggca ccgtgtcgca gcgcctgcag
     7921 ctggtgtcgc agctgcgcga cggcctgcag cgcgacgagt tcgtgctggc gttccagccg
     7981 ctgtgggggc tggccggcga accgcgcggg ctggaggcgc tggtgcgctg gcggcatccc
     8041 gagcgcggcc tgctgccgcc gtcggacttc atcggcgtgt gcgaggagag cgggctgatc
     8101 gtcgagctgg gccgccgggt gctgcgcgag gccgcgcgcc accacgcgct gctcgccgcc
     8161 accggcctcg gccacctgcg catcgcggtg aacgtgtccg cggcgcagtt cgcgcacgac
     8221 ctgcacggcg aggtggcggc ggtggtcgcc gagttcgccc tgccgcccgg cgcgctcgag
     8281 atcgaactca ccgagagcgt gatcatggac aacaccgatc gcgcgatcga caccatgcgc
     8341 cgcatcgccg aactcggcgt gggcctgtcg cttgacgact tcggcaccgg ctattccagc
     8401 ctggcctacc tcaagcgcct gccgctggac cggctgaaga tcgaccgctc gttcgtgcag
     8461 gacctcgggc acgacctcga ggacgcggcg atctgcgcct cgatcatcgg cctcggccac
     8521 ctgctcggcc tgcgcaccgt cgccgagggc gtggaaaccg agcagcagtg cgcctggctg
     8581 cgcgcgcgcg gctgcgacga gctgcagggc ttcctgctcg gccggccgat ggcgttcgat
     8641 gccctgctgc cgctgttgca ggccgcgcgc gtggcgggcg gcgacgacat cgccgcgcag
     8701 ccggacatcg cccgctagcg cctgccgcgc gacggctttt tccgcgtgga cggccgcgcc
     8761 gcgcggcgga tgcgccgccg gccagccgct acactcgccg catgaagatc gccagctgga
     8821 acgtcaactc gctcaacgtg cgcctgccgc acctcacacg gtggctgcag gccgccgcgc
     8881 ccgacgtcgt cgcgctgcag gagaccaagc tcgaggacga gcgcttcccc gacaccgcgc
     8941 tggccgcgct cggctaccgc agcgtgttcg ccgggcagaa gacctacaac ggcgtcgcca
     9001 tcctcgcgcg cgacgcggcg atcgaggacg tgcaggtcgg catccccggc ttcgaggatc
     9061 cgcagcggcg ggtgatcgcc gccaccgtcg gcggcgtgcg cgtggtcgac ttctacgtgg
     9121 tcaacggcca ggcggtgggc agcgccaagt tcgactacaa gctgcagtgg ctggccgcgg
     9181 cgcgggcgat gctcgccgac gaactcgcgc gccatcccag gctggtggtg ctcggcgact
     9241 tcaacatcgc gcccgccgac ctcgacgtgc acgacccgaa gcgctggcgc gagaagatcc
     9301 tgtgctcgac gcccgaacgc gaggcgctcg ccggcctgac gacgctcggc ctgcacgaca
     9361 gcttccgcct gcaccacgcc gagggcggcc accacagctg gtgggactac cggctgggtg
     9421 cgttcgaacg cggctggggg ctgcgcatcg acctgctgct ggcgtcggac gccctgcggc
     9481 cggcgtgcac cgccgccggc atcgacctcg tcccgcgcgg ctgggagcgg ccgagcgacc
     9541 acacgccggt gtgggcggaa ttcgacgcct gagccggtcc tggcggaggc cggcagcggc
     9601 aggccccgcc cgcgccgcga cccggccaaa acaaaaggcc cggatcaccc gggcctttcg
     9661 cgtccagcgc agtggcgtcg ttgtcagcgt acgcgtccgc gacggaacag gttcacgatg
     9721 gcgagcagga tgatcgcgcc gatcagtgac acgaccaggc tcattacgc
//
LOCUS       DATIQC010000061         4095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_74687, whole genome shotgun sequence.
ACCESSION   DATIQC010000061 DATIQC010000000
VERSION     DATIQC010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74687"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..181)
                     /locus_tag="VLM17_01295"
     CDS             complement(<1..181)
                     /locus_tag="VLM17_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64225.1"
                     /translation="MIRTPPARTAQAFLGYLAVYLGCAFLGLQLMAGGGGVPFFWPAA
                     GVALAVVVLRGPRWAV"
     gene            complement(178..3249)
                     /locus_tag="VLM17_01300"
     CDS             complement(178..3249)
                     /locus_tag="VLM17_01300"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSR64226.1"
                     /translation="MKPLRPALRWLYAVLLPAWLLLCPAARALAPDKAFSHYVLDTWS
                     IEDGLPQITAIALAQDRTGYLWVGTQSGLARFDGVRFTTFTPRLEPALPGIWIRSLLV
                     DRHGRLWIGTYKGLTLYADGRFSAVRAGDTARWPELDILALAELADGGIVAATPEGLF
                     RVGDGHLLPAPGPKPALSLLPAGADLWVGTTGAVVRVRGGRLAALPLPGSAGGVAVNR
                     LVAAQGRLWAGTSQGLYAFADGWKAVATGTVFDQAPVNAMLADRDHNLWVAGSSGLAR
                     FRDGALAEFVPDLQLGGFRQVIAMLEDREGNLWLGSQLDGIGRLWNGWTRRYSTGEGL
                     RDPIVWSLSPGPDGRLWVGGSDGLSVLENGRFRQVVPGAALPHPQAYNLLAEADRVWI
                     GTRRGLAVWRDGRLALPPEFAPMGAAQINGIVRAADGSLWFPTSDGLFHWHDGVLQRY
                     GQAQGLKDPRVRVIAFDHRGRMLLGTQSGLYALQDGRAMPLADAGLPADLDISAVYVL
                     RDGRITVGSLDEHLFVQAGGRWYQLGPEQGMPGNAPFFMTEDRRWLWAAGIRGIERLP
                     LADLPRAGDAATRRVHGEMVLNERGDPNAGQQGACCNGAGMSKGFARDGVLWLPSRDG
                     VVAFDTTAIHKNPVPPPVVIERLHTPAGWRELPPSGAALALPADARDLGFEFSALSFQ
                     DPRSVQLRYRLRGYDQDWHRLDDPRRRSANYTNLPPGDYTFEVIGANNAGVWNPRPAL
                     LRFSIRPYFQETWLFRALLGALAVVVLYAGYRWQQLRHARQRTQLEAQVQSRTVELHA
                     ANARLEMASQTDPLTGLRNRRYLANQIPADLAYYDRQRTRRAEYDQVLVFALVDVDHF
                     KRVNDEFGHRAGDQVLLQVAQVLGALARSSDYLARWGGEEFLLVFRPMGGRHLEALGE
                     RIRECIARHPFDIGTGEPLRLTCSVGLAEYPLFHEAQHGVGWEEIVELADAAMYWVKQ
                     HGRDGWAALRPSEFTDRAALIRDLHGGAHALMHGARLQLLTSRPMPSAEVP"
     gene            complement(3343..>4095)
                     /locus_tag="VLM17_01305"
     CDS             complement(3343..>4095)
                     /locus_tag="VLM17_01305"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HSR64227.1"
                     /translation="EIASAMYACIDRGMKTEGVLPGALKVRRRAHGIWKNLVADADRR
                     IADPLAALDWVNLWALAVNEENAAGGRVVTAPTNGAAGILPAVLHYYERFCASEKDAG
                     AREQGIFDFLLTASAVGILYKENASISGAEVGCQGEVGVACSMAAAGLTAALGGTWGQ
                     IENAAEIGMEHNLGLTCDPIGGLVQIPCIERNAMGSVKAINASRMALRGDGKHKVSLD
                     KVIRTMRDTGRDMQDKYKETSRGGLAVNVIEC"
BASE COUNT          552 a         1466 c         1529 g          548 t
ORIGIN      
        1 gcaccgccca gcgcggcccg cgcagcacca ccaccgcgag cgcgacgccg gccgccggcc
       61 agaagaacgg aacgccgccg ccgccggcca tcagctgcag gcccaggaag gcgcagccga
      121 gatacacggc gaggtagccg aggaacgcct gcgcggtgcg tgccggtggc gtgcggatca
      181 cggcacctcc gcggacggca tcggccgcga ggtcagcagc tgcagccgcg cgccatgcat
      241 cagcgcgtgc gcgccgccgt gcaggtcgcg gatcagggcg gcgcgatcgg tgaactcgct
      301 gggccgcagc gccgcccagc catcgcggcc gtgctgcttg acccagtaca tcgccgcgtc
      361 ggcgagttcg acgatttcct cccagccgac cccgtgctgc gcctcgtgga acagcggata
      421 ttcggccagg ccgaccgagc aggtcagtcg cagcggttcg ccggtgccga tgtcgaacgg
      481 atggcgcgcg atgcattcgc ggatgcgttc gcccagtgcc tccaggtggc ggcctcccat
      541 cggccggaac accagcagga attcctcgcc gccccagcgc gccaggtagt cgctgctgcg
      601 cgcgagcgcg ccgagcacct gcgccacctg cagcagcacc tggtcgcccg cgcggtggcc
      661 gaattcgtcg ttgacgcgct tgaagtggtc gacgtcgacc agggcgaaca ccagcacctg
      721 gtcgtattcg gcgcggcggg tgcgctggcg atcgtagtag gcgaggtcgg cggggatctg
      781 gttggcgagg tagcggcggt tgcgcaggcc ggtgagcggg tcggtctggc tggccatttc
      841 caggcgcgcg ttggcggcgt gcagctcgac cgtgcgcgac tgcacctgcg cctcgagctg
      901 ggtgcgctgg cgtgcgtggc gcagctgctg ccagcggtag ccggcataca gcacgaccac
      961 cgccagcgcg ccgagcagcg cgcggaacag ccaggtttcc tggaagtagg gccggatcga
     1021 gaagcgcagc agcgccggcc gcgggttcca cacgccggcg ttgttggcgc cgatcacctc
     1081 gaaggtgtag tcgcccggcg gcaggttggt gtagttggcg ctgcgccggc gcggatcgtc
     1141 gagccggtgc cagtcctggt cgtagccgcg caggcgatag cgcagctgca cgctgcgcgg
     1201 gtcctggaag ctgagcgcgc tgaactcgaa gccgaggtcg cgggcgtcgg ccgggagcgc
     1261 cagcgccgct cccgacggcg gcagttcgcg ccagccggcg ggggtgtgca ggcgttcgat
     1321 caccaccggc ggcggcaccg ggttcttgtg gatggcggtg gtgtcgaagg cgaccacgcc
     1381 gtcgcgcgag ggcagccaca gcacgccgtc ccgggcgaac cccttggaca tgccggcgcc
     1441 gttgcagcac gcgccctgct ggccggcgtt gggatcgccg cgttcgttga gcaccatctc
     1501 gccgtgcacc cgccgggtgg cggcgtcgcc cgcgcgcggc aggtcggcga gcggcaggcg
     1561 ctcgatgccg cggatgcccg ccgcccacag ccagcgccgg tcctcggtca tgaagaacgg
     1621 cgcgttgccc ggcatgccct gttcggggcc gagctggtac cagcggccgc cggcctggac
     1681 gaacaggtgc tcgtcgagcg agccgaccgt gatgcggccg tcgcgcagca cgtacaccgc
     1741 ggaaatgtcg aggtcggccg gcagcccggc gtcggccagc ggcatcgccc gcccgtcctg
     1801 cagtgcatac aggccggact gggtgcccag cagcatgcgc ccgcggtggt cgaacgcgat
     1861 cacccgcacg cgcgggtcct tcaggccctg cgcctgcccg tagcgctgca ggacgccgtc
     1921 gtgccagtgg aacaggccgt cgctggtcgg gaaccacagg ctgccgtcgg cagcgcgcac
     1981 gatgccgttg atctgggcgg cacccatcgg cgcgaattcc ggcggcagcg cgagtcggcc
     2041 gtcgcgccac accgcgaggc cacggcgggt gccgatccac acccggtccg cctcggcgag
     2101 caggttgtag gcctgtggat gcggcagcgc cgcaccgggc acgacctggc ggaagcgtcc
     2161 gttctcgagc acgctcaggc cgtcgctgcc gcccacccac aggcggccgt ccgggccggg
     2221 cgagagcgac cacacgatcg ggtcgcgcag tccctcgccg gtgctgtagc ggcgggtcca
     2281 gccgttccac aggcggccga tgccgtcgag ctggctgccc agccacaggt tgccctcgcg
     2341 gtcctccagc atggcgatga cctggcggaa gccgccgagc tggaggtcgg gcacgaattc
     2401 ggccagggcg ccgtcgcgga agcgggcgag tccggaactg ccggccaccc acaggttgtg
     2461 gtcgcggtcg gcgagcatcg cgttgacggg ggcctggtcg aacacggtgc cggtggcgac
     2521 cgccttccag ccatcggcga aggcgtacag gccctgcgag gtccccgccc acaaccggcc
     2581 ctgcgccgcc accaggcggt tgaccgcgac gccgccggca ctgccgggca ggggcagcgc
     2641 cgccagccgg ccgccgcgca cccggaccac cgcgcccgtg gtgccgaccc acaggtcggc
     2701 gcccgcgggc agcaggctga gcgccggttt cggtcccggg gcgggcagca ggtggccgtc
     2761 gcccacgcgg aacaggccct ccggggtggc ggcgacgatg ccgccgtcgg ccagctcggc
     2821 cagcgcgagg atgtccagtt ccggccaacg cgcggtgtcg ccggcgcgca ccgcgctgaa
     2881 gcggccgtcg gcatacaggg tcaggccctt gtaggtgccg atccacagcc gcccgtgccg
     2941 gtccaccagc agcgatcgga tccagatgcc cggcagcgcc ggctccagcc gcggagtgaa
     3001 ggtggtgaag cggacgccgt cgaagcgggc gaggccgctc tgggtgccga cccagaggta
     3061 gccggtccgg tcctgggcga gcgcgatcgc ggtgatctgc ggcaggccgt cctcgatcga
     3121 ccaggtgtcg aggacgtagt gggagaaggc cttgtccggc gccagcgccc gcgccgccgg
     3181 gcacagcagc agccaggccg gcagcagcac ggcgtacagc cagcgcagcg cgggacgtag
     3241 cggcttcacg gcggtccggt ccccctgccg gcggatgcta cgccggtcgt cgtgcggtgg
     3301 cgcgatgctt cgcggggccg gcgggatggg ggcgcgccgg gcctagcatt cgatcacgtt
     3361 caccgccagg ccgccacggg acgtttcctt gtacttgtcc tgcatgtcgc ggccggtgtc
     3421 gcgcatggtc ctgatgacct tgtccagcga caccttgtgc ttgccgtcgc cgcgcagggc
     3481 catgcgcgac gcgttgatcg ccttgaccga gcccatcgcg ttgcgttcga tgcaggggat
     3541 ctgcacgagc ccgccgatcg ggtcgcaggt cagcccgagg ttgtgctcca tgccgatctc
     3601 ggcggcgttc tcgatctgcc cccacgtccc gccgagcgcg gcggtgaggc cggcggccgc
     3661 catcgagcag gcgacgccga cctcgccctg gcagccgacc tcggcgccgg agatcgacgc
     3721 gttttccttg tagaggatgc cgaccgccga cgcggtgagg aggaagtcga agatgccctg
     3781 ctcgcgcgcg ccggcatcct tctcgctggc gcagaagcgc tcgtagtagt gcagcaccgc
     3841 cggcaggatg ccggccgcgc cgttggtcgg cgcggtcacc acgcggccgc cggcggcgtt
     3901 ctcctcgttc accgccagcg cccacaggtt cacccagtcc agcgccgcga gcgggtcggc
     3961 gatccggcgg tcggcgtcgg ccaccaggtt cttccagatg ccgtgggcgc gccgccggac
     4021 cttgagcgcg ccgggcagga cgccctcggt cttcatgccg cggtcgatgc aggcgtacat
     4081 ggccgaggcg atctc
//
LOCUS       DATIQC010000062         7164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_251530, whole genome shotgun sequence.
ACCESSION   DATIQC010000062 DATIQC010000000
VERSION     DATIQC010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7164
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251530"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VLM17_01310"
     CDS             complement(<1..214)
                     /locus_tag="VLM17_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64228.1"
                     /translation="MTLRRWLAAVLLATPAWAAAAPATLADCDAAAPSTTLVAEASPA
                     TTDAQARAYWLDDGRVQWPAVAAGSSR"
     gene            complement(231..1850)
                     /locus_tag="VLM17_01315"
     CDS             complement(231..1850)
                     /locus_tag="VLM17_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase family protein"
                     /protein_id="HSR64229.1"
                     /translation="MATNRWWRGAVIYQIYPRSFLDTNGDGIGDLPGIIEKLDYVASL
                     GVDAIWISPFFKSPMADFGYDIADYRDVDPLFGTLDDFDRLLAKAHRLGLKVMIDQVL
                     SHTSVEHDWFRDSREAREGDRSEWYVWADAKPDGTPPNNWLSIFGGVAWQWEPRRGQY
                     FLHNFLASQPDLNFHNPDVRAAQLDNVKFWLDRGVDGMRLDAINFCFHDAQLRDNPPK
                     PAELRTGRGFSPDNPYAFQYHWHNNTQPENLGFLEELRALMDRYPDVAALGEISSEDS
                     LATMAEYVGDQRLHMGYSFELLTDDTTAAYVRQTVETLEAKMPHGWPCWAISNHDVRR
                     AVTRWGGDEADDALAKQLVALVCSLRGSVCLYQGEELGLPEADVPYEQLQDPYGIAFW
                     PNFKGRDGCRTPMPWNGGAHASFSEAAPWLPVPQAHDARSVARQECDPASVLHATRHF
                     LRWRHGQPALVEGDIRFLDAPEPVLAFVRRGGGQSLLVVFNLSAEEVAWTLPADCSVA
                     YVKDGHGLLEARVAARRLHLPPRGCFYACLG"
     gene            2067..4262
                     /locus_tag="VLM17_01320"
     CDS             2067..4262
                     /locus_tag="VLM17_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014036299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Six-hairpin glycosidase-like protein"
                     /protein_id="HSR64230.1"
                     /translation="MLHALLLMAATGAAMATPPGSAGNDRAWRDALAWRGQVASIEAR
                     DGGWVLHAPAGDRTIAPQPLRSETASPLFDGLFALAQQDLAQDKVDAITDWGFNHQQP
                     LPCRCFETGEKWHYVWTRDLSFAADLALARLDPERTRTSLRFKLSAVRAPGAPQGLYV
                     AQDTGSGGSWPVSTDRVVWFLAARHLLGDAAFADETWRALTGTLAQDRRYAFDPDTGL
                     YRGETSFLDWREQSYPAWTAHDVTYIAESFALSTNVLHYEALRLAERMARRRHDPRAG
                     GFATQAAALARAIDARFWRADRGMYASWIGSAGDAAPVDAYDLLATALVIDSGIAPPG
                     RARLALARYPVAEAGSPVIWPQRSDAPIYHNRAIWPFVSAYALRAARKVEDPARIAFE
                     VRSLVRGAALAGSNMENFELATQSTHVDDGALSGPVVDSPRQLWSVAGYLDMVIGGVF
                     GVGGDGRVGPKIPAELVPMLFGDRRVIALDLGDRRIVLQRPARITGNLLVAGPARMRG
                     STTTVQLVARQVVAAPLAGEAARVSPPTPDAPRPLGAGAGWQVSLPAHMRLYVDGKRF
                     ADAGTGGRDVPLDGAHCLHVVRLDADGLESLPSPTACTGGAQQLAGDWPRTWTAPRDG
                     RYRVRLRYANAHGPINTGITAAVKTLRLQCGTASQAGPIVMPHREGEGLSTAWVFTAR
                     AGVPCRFALAEGFNMSGLAHFRLYTGGEGGEAGPLNDATIDALAITPAR"
     gene            4279..5784
                     /locus_tag="VLM17_01325"
     CDS             4279..5784
                     /locus_tag="VLM17_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR64231.1"
                     /translation="MTTTTPAAKPTLSFWQIWNMCFGFLGIQFGFALQNANVSRIFQT
                     LGASMDDIPILWVAAPLTGLIVQPIVGYMSDRTWNRLGRRRPYFLGGAVLASLALFAM
                     PNAPLLWIAAGLLWVLDASINVSMEPFRAFVGDQLPERQRASGYAMQSFFIGVGSVVA
                     SMLPWLLAQVGVANTAGPGEVPATVHYAFYLGGAVLLGAIGWTVLRTREYPPETLQAW
                     DQAPPLAHQPLEAGRARRNGLAWVAAGLAGAALVAAFALDKQLYLLAGGVAAYGVALL
                     LVGAVRPDGAFATIMADLHDMPGEMRKLAVVQFFSWFALFAMWIYTTPAVTSVHYGSS
                     DTASAAYNEGANWVGVLFAAYNGFAALAAVVIPWMVRRWGLRASHLVNVVLGGAGLLS
                     FALVRDPHWLLLSMVGVGFAWASILSLPYALLSDSLPAGKMGIYMGIFNFFIVIPQLV
                     AASLLGFLLKVFFGGQPLYALVIGGASLVVAGLCVLRVREPLPQAAPAVAP"
     gene            5817..>7164
                     /locus_tag="VLM17_01330"
     CDS             5817..>7164
                     /locus_tag="VLM17_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005408457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HSR64232.1"
                     /translation="MLLAGCAGARHPAAAPPASDYYGTLEPFASDAVYFVMTDRFVDG
                     DPSNDHRDQGGAHRSFDIPVAGAPPGRSDNIGYLGGDFRGLLDNAGYIRDMGFGAVWL
                     TPIVDNPDEAFTGGDPVRWGSMFTDRGKTGYHGYWGDNFYVLDEHLPSRDLDFAGLTK
                     GLKAHGLKTVLDIVCNHGSPAFTMPKQQPKFGQLFDRDWHLVADHQDLPPAKLDPAHN
                     PLHAFFNTSGNLAQLSDFNENNPAVLDYFVGAYLQWIDQGADAFRIDTLPWMPDGYWH
                     AFAARIRAKHPGFFMFGEAFDYDAGKIAPHTWAENAGVSVLDFPLKERIAQIFGRKGG
                     GFELLADRLHLDDRLYANPYELMTFYDNHDMARLDASDAGFIDAHNWLFTARGIPVVY
                     YGSETGFQRGTAEHAGNRNYFGQQRVDAAIGNPIREHLKRIATLRANTPASRLRSTS"
BASE COUNT          995 a         2631 c         2473 g         1065 t
ORIGIN      
        1 agcgcgacga cccggccgcg accgcgggcc attgcacccg tccgtcatcg agccagtagg
       61 cccgcgcctg cgcatcggtg gtcgcgggcg acgcctcggc gaccagcgtc gtggagggag
      121 cggccgcatc gcagtcggcc agcgtggccg gagcggccgc cgcccatgcc ggcgtggcca
      181 gcaggaccgc cgcgagccat cgccgcaacg tcatggaggg tgcgcgcgcc tcagccgagg
      241 caggcataga agcagccacg cggcggcagg tgcaggcgcc gcgcggcgac gcgtgcttcc
      301 agcaggccgt gcccatcctt gacgtaggcg acgctgcagt cggccggcag cgtccaggcc
      361 acctcttccg cggagaggtt gaacaccacc agcaacgact gaccgccgcc gcgccgcacg
      421 aacgccagca ccggctcggg cgcgtcgagg aagcggatgt cgccttcgac cagcgccggc
      481 tggccatgcc gccagcgcag gaaatggcgg gtggcatgca gcaccgacgc cggatcgcat
      541 tcctgccgcg cgaccgagcg ggcgtcgtgc gcctgcggca ccggcagcca cggcgcggcc
      601 tcgctgaagc tcgcgtgcgc gccgccgttc cagggcatcg gcgtgcggca gccgtcgcgg
      661 cccttgaagt tgggccagaa cgcgatgccg tagggatcct gcagctgttc gtagggcacg
      721 tcggcctcgg gcagccccag ctcctcgccc tggtacaggc acaccgaacc gcgcagcgag
      781 cacaccagcg cgaccagctg cttggcgagc gcatcgtcgg cttcgtcgcc gccccagcgc
      841 gtcaccgcgc ggcgcacgtc gtggttggag atcgcccagc acggccagcc gtgcggcatc
      901 ttcgcctcca gcgtctccac cgtctggcgc acgtaggccg ccgtggtgtc gtcggtcagc
      961 agctcgaagc tgtagcccat gtgcaggcgc tggtcgccga cgtactcggc catcgtcgcc
     1021 agcgagtcct ccgaggagat ctcgccgagc gcggcgacgt ccggatagcg gtccatcagc
     1081 gcgcgcagct cctcgaggaa gccgaggttc tccggctgcg tgttgttgtg ccagtggtac
     1141 tggaacgcgt acggattgtc cggactgaag ccgcggccgg tgcgcagttc cgccggcttg
     1201 ggcgggttgt cgcgcagttg cgcgtcgtgg aagcagaagt tgatcgcgtc caggcgcatg
     1261 ccgtcgacgc cgcggtccag ccagaacttc acgttgtcca gctgcgcggc gcgcacgtcc
     1321 gggttgtgga agttcaggtc cggctgcgag gccaggaagt tgtgcaggaa gtattgcccg
     1381 cgccgcggct cccattgcca cgccacgccg ccgaagatcg acagccagtt gttgggcggg
     1441 gtgccgtcgg gcttcgcgtc ggcccacacg taccactcgg accggtcgcc ttcgcgcgcc
     1501 tcgcggctgt ccctgaacca gtcatgttcg accgaggtgt ggctgagcac ctggtcgatc
     1561 atcaccttga ggcccagccg gtgcgccttc gccagcaggc ggtcgaagtc gtcgagcgtg
     1621 ccgaacagcg gatcgacgtc gcggtagtcg gcgatgtcgt agccgaagtc ggccatcggc
     1681 gacttgaaga agggcgagat ccagatcgcg tcgacgccga ggctggcgac gtagtcgagc
     1741 ttctcgatga tgcccgggag gtcgccgatg ccgtcgccgt tcgtgtcaag gaagctgcgc
     1801 ggatagatct ggtagatcac cgcgccgcgc caccagcggt tcgtcgccat cagttccgtg
     1861 ccccggaaaa cgtgcaggcg cctcgttgcg ccgtcagggc ggccactatt ccatgcgccg
     1921 cgcggcgatg gaccatgcca tccggcccgt gtggatgaat acgtttgcag gatcgcgttg
     1981 tgcacgcgca ccgctgacta ccatgcctgc gctccgaccc gggcgtggcc ggtggcatgt
     2041 cgcgcgagaa ggagccaccg ggccagatgc tgcacgcctt gctgttgatg gccgccaccg
     2101 gcgcggcgat ggccacgcct cccggttcgg ccggcaacga ccgcgcctgg cgcgacgcgc
     2161 tggcatggcg cgggcaggtg gcatcgatcg aagcgcgcga cggcggctgg gtgctgcatg
     2221 cgcccgctgg cgaccgcacg atcgcaccgc aaccgctgcg cagcgaaacc gccagcccgc
     2281 tgttcgatgg cctgttcgcg ctagcccagc aggacctcgc ccaggacaag gtcgacgcga
     2341 tcaccgactg gggcttcaac caccagcagc ccctgccctg ccgctgcttc gagacaggcg
     2401 agaagtggca ctacgtgtgg acgcgcgacc tgtccttcgc cgccgacctc gcgctggcgc
     2461 ggctggaccc ggagcgcacc cggacctcgc tgcgcttcaa gctctccgcc gtgcgcgcgc
     2521 ccggcgcccc gcaggggctg tacgtcgcgc aggacaccgg ttccggcggc agctggccgg
     2581 tcagcaccga ccgcgtggtg tggttcctcg ccgcgcgcca cctgctgggc gacgccgcct
     2641 tcgccgacga gacctggcgc gcgctgaccg gcacgctggc gcaggaccgg cgctacgcgt
     2701 tcgatccgga caccggcctg taccgcggcg agacatcgtt cctcgactgg cgcgagcaga
     2761 gctacccggc gtggacggcg cacgacgtga cctacatcgc ggagtcgttc gcgctgtcga
     2821 ccaacgtgct gcactacgaa gcgttgcgcc tggccgagcg catggcgcgc cggcgacacg
     2881 atccgcgcgc cggcggcttt gcgacgcagg cggcggcgct ggcgcgggcg atcgacgcgc
     2941 gcttctggcg cgccgaccgg ggcatgtacg cgagctggat cggcagcgcc ggcgacgccg
     3001 cgccggtcga cgcctacgac ctgctcgcca ccgcgctggt gatcgacagc ggcatcgcgc
     3061 cgcccggtcg ggcacgcctg gcgctggcgc gctatccggt ggcggaggcc ggcagcccgg
     3121 tgatctggcc gcagcgctcg gacgcgccga tctaccacaa ccgcgcgatc tggccgttcg
     3181 tcagcgccta cgcgctgcgc gcggcgcgca aggtcgagga ccccgcgcgc atcgccttcg
     3241 aggtgcgttc gctggtgcgc ggcgccgcgc tggccggctc caacatggag aacttcgagc
     3301 tcgccacgca gtccacgcat gtcgacgacg gcgcgctgtc cggcccggtg gtcgattcgc
     3361 cgcggcagct gtggtcggtc gcgggttacc tcgacatggt gatcggcggc gtgttcggcg
     3421 tcggcgggga tgggcgcgtc gggccgaaga tcccggcgga actggtgccg atgctgttcg
     3481 gcgatcgccg cgtgatcgcg ctcgacctcg gcgaccgccg catcgtgctg cagcgccccg
     3541 cacggatcac cggcaacctg ctggtcgccg gcccggcgcg catgcggggc agcaccacga
     3601 ccgtgcagct ggtggcgcgc caggtcgtcg ccgcgcccct ggcgggcgag gccgcgcgcg
     3661 tctcgccacc gacgccggat gcgccacggc ccctgggcgc cggcgcaggg tggcaggtat
     3721 cgctgccggc ccacatgcgc ctgtacgtcg acggcaagcg tttcgccgat gccggcaccg
     3781 gcggacgcga tgtcccgctc gatggcgcgc actgcctgca cgtggtccga ctcgatgccg
     3841 acggcctcga atccctgccc tcgcccaccg cctgcaccgg cggcgcgcag cagctcgccg
     3901 gcgactggcc gcgcacgtgg accgcgccgc gcgacggccg ctaccgcgtg cggctgcgct
     3961 acgcgaatgc gcatggtccg atcaacaccg gcatcaccgc tgcggtgaag acgctgcgcc
     4021 tgcaatgcgg cactgcgtcg caggccgggc cgatcgtgat gccgcaccgc gagggcgagg
     4081 gcctgtcgac cgcctgggtg ttcaccgcgc gcgccggcgt accatgccgc ttcgcgctcg
     4141 cggaaggctt caacatgagc ggcctcgccc acttccgcct ctataccggc ggcgaaggcg
     4201 gcgaggccgg accactgaac gacgccacca tcgacgcgct cgccatcacg cccgcgcgct
     4261 gaccgaaccg gaacccgcat gaccacgacc acgcccgccg ccaagccgac gctctcgttc
     4321 tggcagatct ggaacatgtg cttcggcttc ctcggcatcc agttcggctt cgcgctgcag
     4381 aacgccaacg tcagccgcat cttccagacg ctgggcgcga gcatggacga catcccgatc
     4441 ctgtgggtcg ccgcgccgct caccggcctg atcgtgcagc cgatcgtcgg ctacatgtcg
     4501 gaccgcacct ggaaccggct cggccgccgc cgtccctact tcctcggcgg cgcggtgctc
     4561 gcctcgctcg cgctgttcgc gatgccgaac gcgccgctgc tgtggatcgc cgccggcctg
     4621 ctatgggtgc tggacgcgtc gatcaacgta tcgatggagc cgttccgcgc gttcgtcggc
     4681 gaccagctgc cggagcgcca gcgcgccagc ggctacgcga tgcagagctt cttcatcggc
     4741 gtgggctcgg tcgtcgcgag catgctgcct tggctgctgg cgcaggtggg cgtcgccaac
     4801 accgccggcc ccggcgaggt gccggcgacc gtgcattacg cgttctacct cggcggcgcg
     4861 gtgctgctcg gcgcgatcgg ctggaccgtg ctgcgcacgc gcgaataccc gcccgagacc
     4921 ctgcaggcct gggaccaggc accgccgctc gcgcaccagc cgctggaggc cgggcgcgcg
     4981 cgccgcaacg ggcttgcctg ggtcgcggcc ggactggccg gcgccgcgct ggtcgccgcg
     5041 ttcgccctgg acaagcagct ctacctgctc gccggcggcg tggccgccta cggcgtcgcg
     5101 ctgctgctgg tcggcgcggt ccggcccgac ggcgcgttcg ccaccatcat ggccgacctg
     5161 cacgacatgc cgggcgagat gcgcaagctc gcggtggtgc agttcttctc ctggttcgcg
     5221 ctgttcgcga tgtggatcta caccacgccg gcggtgacct cggtgcacta cggcagcagc
     5281 gacaccgcgt cggcggccta caacgagggc gccaactggg tcggcgtgct gttcgccgcc
     5341 tacaacggct tcgccgcgct ggcggcggtg gtgatcccgt ggatggtgcg gcgctggggc
     5401 ctgcgcgcca gccacctggt caacgtcgtg ctcggcggcg ccgggctgct gtcgttcgcg
     5461 ctggtccgcg acccgcactg gctgctgctg tcgatggtcg gcgtcggctt cgcctgggcc
     5521 tcgatcctgt cgctgccgta cgcgctgctc agcgacagcc tcccggcagg gaagatgggc
     5581 atctacatgg gcatcttcaa cttcttcatc gtgatcccgc agctggtcgc ggccagcctg
     5641 ctcggcttcc tgctgaaagt gttcttcggc ggccagccgc tgtacgcgct ggtgatcggc
     5701 ggcgccagcc tggtcgtggc cggcctgtgc gtgctgcgcg tgcgcgagcc gctgccgcag
     5761 gcggccccgg cggtggcgcc gtgagccgcg tgcaacgctc cctgctcgcc tgcgccctgc
     5821 tgctcgccgg ctgcgccggc gcacgccatc cggccgcggc gccgcccgct tccgactact
     5881 acggcacact cgagccgttc gcgtcggacg cggtctactt cgtgatgacc gaccgcttcg
     5941 tcgatggcga tccgtccaac gaccaccgcg accagggcgg ggcgcaccgc agcttcgaca
     6001 tcccggtggc tggcgcgccg ccgggccgga gcgacaacat cggctacctc ggcggcgatt
     6061 tccgcggcct gctcgacaac gccggctaca tccgcgacat gggcttcggc gcggtgtggc
     6121 tcacgccgat cgtcgacaac cccgacgagg ccttcaccgg cggcgatccg gtccgctggg
     6181 gctcgatgtt caccgaccgc ggcaagaccg gctaccacgg ctactggggc gacaacttct
     6241 acgtgctcga cgagcacctg cccagccgcg acctcgactt cgccgggctg acgaagggat
     6301 tgaaggcgca cgggctgaag acggtgctcg acatcgtctg caaccacggc tcgccggcat
     6361 tcacgatgcc gaagcagcaa ccgaagttcg gccagctgtt cgaccgcgac tggcacctcg
     6421 tcgccgacca ccaggacctg ccgccggcga agctcgaccc ggcgcacaac ccgctgcacg
     6481 cgttcttcaa caccagcggc aacctcgccc agctgtcgga tttcaacgaa aacaacccgg
     6541 cggtgctcga ctacttcgtc ggcgcctacc tgcaatggat cgaccagggc gcggacgcgt
     6601 tccgcatcga caccctgccc tggatgccgg acggctattg gcacgccttt gccgcgcgca
     6661 tccgcgcgaa gcacccgggc ttcttcatgt tcggcgaggc cttcgactac gacgccggca
     6721 agatcgcacc gcacacctgg gcggaaaacg cgggcgtgag cgtgctcgac ttcccgctga
     6781 aggagcgcat cgcgcagatc ttcggccgca agggcggcgg cttcgagctg ctcgccgacc
     6841 gcctgcacct cgacgaccgg ctgtacgcca acccgtacga gctgatgacg ttctacgaca
     6901 accacgacat ggcgcggctg gacgccagcg acgcgggctt catcgacgcg cacaactggc
     6961 tgttcaccgc gcgcggcatc ccggtcgtct actacggctc ggaaaccggc ttccagcgcg
     7021 gcaccgccga gcatgccggc aaccgcaact acttcggcca gcagcgcgtc gatgccgcga
     7081 tcggcaatcc gatccgcgag cacctcaagc gcatcgccac gctgcgcgcg aacacgccgg
     7141 ccagccgctt gcgctcgacg tcgg
//
LOCUS       DATIQC010000063         3370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_604866, whole genome shotgun sequence.
ACCESSION   DATIQC010000063 DATIQC010000000
VERSION     DATIQC010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_604866"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VLM17_01335"
     CDS             complement(<1..188)
                     /locus_tag="VLM17_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008435343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64233.1"
                     /translation="MPSRAWCAPDSLDADARHRIELLAQTYRDADPNFSGWAEGYGVI
                     QHAPLTQVRVREMVDDLAS"
     gene            complement(249..473)
                     /locus_tag="VLM17_01340"
     CDS             complement(249..473)
                     /locus_tag="VLM17_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2933 domain-containing protein"
                     /protein_id="HSR64234.1"
                     /translation="MDLRRARRLRIAWWLAFACVVAFYLVTAHRAHLAGLREWLPLLV
                     LLACPLMHLFGHRHGQHAGRPKAGEQDRRP"
     gene            complement(502..828)
                     /locus_tag="VLM17_01345"
     CDS             complement(502..828)
                     /locus_tag="VLM17_01345"
                     /inference="COORDINATES: protein motif:HMM:NF039498.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5676 family membrane protein"
                     /protein_id="HSR64235.1"
                     /translation="MTSRTENPGMGAFDRHAVSPRLRISVVGWALSTFLLLSFLLCVA
                     GYLAFPRLPIAHSALSLVLPGFTLLDWTSFCLGLVESFAWGWYIAVGFGLLYNFFASQ
                     AAATGD"
     gene            1087..1467
                     /locus_tag="VLM17_01350"
     CDS             1087..1467
                     /locus_tag="VLM17_01350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64236.1"
                     /translation="MGRRPRRHRRIALMVLLCLFFQQAALAAYACPIERMPARMDAMA
                     AHCAEMGMRQAQDNPALCAKHCAPDRSTAADQAKLSVPALLLPPPGFATVALVPAAAG
                     GGQADVRLARSDPPPRLRFCTLLL"
     gene            1664..2818
                     /locus_tag="VLM17_01355"
     CDS             1664..2818
                     /locus_tag="VLM17_01355"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HSR64237.1"
                     /translation="MQRAAAQAPLLEARQAQVVAAQEEARRAGALPDPVLSVGIDNLP
                     VNGPDAFDTAADSMTMKKIGLQQAIPARAKRDAEQTLALRAVEASRARSGADAVAVRR
                     AAADAWIDAWSSEQALAALRQSREQAALASAVARARVEGGGASAVDAMAVEAAGLDLD
                     NRIAEQQAVHDAALAALERWTGTTGSIAQDAPDFGRLPYTEVQLFARLDRLPALSPAS
                     ADVETAAAQVDLARAARRPDWSVAASYGQRSGGRDDMLMLEVGIGLPLFTRSRQDRAI
                     AAREADYQAAIATREDLRRDQRAQLRGAFARWQGVQRQVALYETRLLPLARDRSAAAL
                     AAFRAGGELQPWIDARRDELTAELSHAEHRRELGHAWAALAFLFPTESQP"
     gene            2815..>3370
                     /locus_tag="VLM17_01360"
     CDS             2815..>3370
                     /locus_tag="VLM17_01360"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR64238.1"
                     /translation="MNRMIVPWGSALLAIAIALAAGYRWGQSQHAQPNIAAGGPGPVR
                     KVLYWYDPMRPDQHFDKPGLSPMGMQMVPRYAAEPEASGIAVAPGLQQALGIRTVPVR
                     RGHLETTIRVPGTIAWDLREERVVSLPVDAIVRRLDARTPFERVHAGQPLARVLAPSW
                     STALAEARALGDARSSGGRGLAAAA"
BASE COUNT          507 a         1185 c         1201 g          477 t
ORIGIN      
        1 gaggccaggt cgtcgaccat ctcgcggacg cggacctggg tcagcggcgc gtgctggatg
       61 accccatagc cctccgccca tccggaaaag ttcgggtcgg cgtcacggta ggtctgggcc
      121 agcaattcga tgcgatggcg cgcgtcggcg tcgagcgaat cgggggcgca ccaggcacgt
      181 gaaggcattt cgtcgcctcc ttggcggctg cttcagccgc gggtagaagc gcgcacgggc
      241 gggcgcgcct acgggcgcct gtcctgctcg cctgccttcg ggcgccccgc atgctggcca
      301 tggcggtgcc cgaagagatg catcagcggg caggccagca acacgagcag cggaagccac
      361 tccctcaaac cggccagatg cgcccgatgc gccgtcacca ggtaaaaggc gacgacacag
      421 gcgaaggcca gccaccaggc gatgcgaagg cgacgggcgc gccggagatc catctatgcc
      481 tccttctccg gcagcgcggg ctcagtctcc ggttgcggct gcctgggagg cgaagaagtt
      541 gtagagcagc ccgaagccca ccgcgatata ccagccccag gcgaagctct ctaccagccc
      601 caggcagaaa ctcgtccaat cgagcagcgt gaagccgggc aggacgaggg agagcgcgga
      661 gtgggcgatc ggcagcctcg gaaaggccag ataccccgcc acgcacagca ggaacgagag
      721 cagcaggaag gtgctgagcg cccagccgac cacgctgatg cgaagccggg gagacaccgc
      781 atggcgatcg aatgcgccca tgcccgggtt ttcggtacgt gaagtcatgg tggttgcctc
      841 ccacgcggtt catcgcgaat gcgacgctac tcccgctgcc gccaagcggt ttgatccggg
      901 tcaaccgcag cgcgcgcttg acgttcaagt aaaacgaagt ggcgggtgac tggcggacgc
      961 ccgatggtcg ggcgtggagg ctggccaaga ctcctgtccg accatcgggc gacggcgccg
     1021 ccgcaccgcc gccaagcctt gatccaggtc agccggaccg gccgtccccg gcgtaccatc
     1081 cgcgccatgg gccgtcgacc acgccgccac cgtcgcatcg cactgatggt gctgctgtgc
     1141 ctgttcttcc agcaggccgc cctggcggcc tatgcctgcc cgatcgagcg gatgccggcg
     1201 cgcatggatg cgatggccgc gcattgcgcg gaaatgggca tgcggcaggc gcaggacaat
     1261 cctgcgctgt gcgccaagca ctgcgcgccg gatcgatcca ccgccgccga ccaggcgaag
     1321 ctctccgtcc ccgcgctgct gctcccgccg cctggtttcg cgacggtcgc gctcgttccc
     1381 gccgcagccg gcggcgggca ggccgacgtg cgcctcgccc gctccgaccc gccgccccga
     1441 ttgcggttct gcacgctcct cctctagccc tccactcgcg atccgcctgt tcgtcgcagc
     1501 gccgctgtgc cctgcgtcca gccatcgtga tgcggagggc ttcatcgtgt tccgtccgtc
     1561 cccgggcatt tccgccctgg cgcggtgcat tctcatcgcg ggaatcacca gtgccgcatt
     1621 ttccgttcgc gccgacgatg gcgcgctgac cctggcggcc gccgtgcagc gtgccgccgc
     1681 ccaggcaccg ctgctcgaag cgcggcaggc gcaggtcgtt gccgcgcagg aggaggcgcg
     1741 tcgtgcgggt gcgctgcccg atcccgtgtt gagcgtcggc atcgacaacc tgccggtcaa
     1801 cggccccgat gcgttcgaca cggcggccga ttcgatgacc atgaagaaga tcggcctgca
     1861 gcaggcgatc ccggcgcgcg ccaagcgcga cgcggagcag acgctggccc tgcgcgcggt
     1921 cgaagcctca cgggcacgca gcggagcgga cgcagtggcg gtgcggcgcg cagcggcgga
     1981 tgcctggatc gacgcctggt ccagcgagca ggcgctggcg gccttgcggc agtcgcgcga
     2041 acaggcggcg cttgccagtg cggtggcacg cgcgcgggtc gagggaggtg gtgcctcggc
     2101 ggtcgatgcc atggccgtcg aggcggctgg attggacctg gacaaccgca tcgcggaaca
     2161 acaggccgtg catgacgcgg cgctcgccgc gctggagcgc tggacgggaa cgacaggcag
     2221 catcgcgcag gacgcgcccg atttcggcag gttgccgtac acggaagtcc agctgttcgc
     2281 acggctcgac cgcttgcccg cgctgtcgcc ggcatccgcg gatgtcgaga cggccgcggc
     2341 acaggtcgat ctcgcccgcg ctgcgcgccg gcccgactgg agcgtggccg cgtcctacgg
     2401 acaacgcagc ggcggccgcg acgacatgct gatgctggaa gtcggaatcg gcctgccgct
     2461 gttcacccgc agccgccagg accgcgccat cgccgcgcgc gaagccgatt accaggcggc
     2521 catcgcgacc cgcgaggacc tccgtcgcga ccagcgcgcg cagctgcgcg gtgcattcgc
     2581 ccgatggcag ggcgtgcagc gccaggtcgc gctgtacgaa acacggctgt tgccgctggc
     2641 gcgggatcgc agcgcggcgg cgttggctgc gttccgcgcg ggcggtgaac tgcagccctg
     2701 gatcgatgcg cggcgcgatg aactgacggc ggagttgtcc cacgcggagc accggcgcga
     2761 actgggccat gcgtgggctg ccctggcgtt cctgttcccg acggagtcgc aaccatgaac
     2821 cgcatgatcg tgccctgggg cagcgcgctc ctggcgattg ccatcgcgct ggccgcgggc
     2881 taccggtggg ggcagtcgca gcatgcgcag ccgaacatcg cggcgggcgg tcccgggccc
     2941 gtacgcaagg tcctgtactg gtacgacccg atgcggccgg accagcattt cgacaagccg
     3001 ggcctgtcgc cgatgggcat gcagatggtg ccccggtatg ccgccgagcc ggaggcttcc
     3061 ggcatcgccg tcgcccccgg cctgcagcag gccctcggca tccggacggt gccggttcga
     3121 cgcggccatc tcgaaaccac catccgcgtc cccgggacga tcgcctggga cctgcgcgag
     3181 gagcgcgtcg tcagcctgcc ggtcgatgcc atcgtgcgac gcctggatgc caggacgcca
     3241 ttcgagcggg tacatgccgg gcaaccgctc gcccgcgtcc tggccccgtc gtggagtact
     3301 gcgctggccg aggcgcgtgc gctgggcgat gcccgttcga gtggggggag gggactggcg
     3361 gccgccgccc
//
LOCUS       DATIQC010000064         6327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_4350, whole genome shotgun sequence.
ACCESSION   DATIQC010000064 DATIQC010000000
VERSION     DATIQC010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6327
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4350"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..977)
                     /locus_tag="VLM17_01365"
     CDS             complement(<1..977)
                     /locus_tag="VLM17_01365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004085852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HSR64239.1"
                     /translation="MAKIIGIDLGTTNSCVAIMEGGKARVIENSEGDRTTPSIVAFTK
                     DGEVLVGASAKRQAVTNPKNTLYAVKRLIGRKFTDAEVQKDIGLVPYKITQHDNGDAW
                     VETSDGRKMAPPEVSARVLEKMKKTAEAYLGETVTEAVITVPAYFNDSQRQATKDAGR
                     IAGLEVRRIINEPTAAALAYGLDKKGTGDRKVAVYDLGGGTFDISIIEIANVEGEMQV
                     EVLSTNGDTFLGGEDFDQRLIDYVVTEFKKEQGVDLSKDVLALQRLKEAAEKAKIELS
                     SNSQTDVNLPYITADASGPKHLAMKLTRAKLESLVEDLVQATIGPCRIAL"
     gene            complement(1071..1586)
                     /gene="grpE"
                     /locus_tag="VLM17_01370"
     CDS             complement(1071..1586)
                     /gene="grpE"
                     /locus_tag="VLM17_01370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HSR64240.1"
                     /translation="MTNDSMQDAGAQAGMDAGGNPLAAELESLRTEVEQLRAEMLRER
                     ADLENQRKRLGRDMDNARRFANERLLGELLPLFDSMEAGLAAAAQNDPLREGMELTLR
                     QLHKIAEGNGLAEVAPARGDSFDPERHQAMSMVEPEGLPPGAVAQVFQKGYVLNDRLL
                     RPALVVVARHD"
     gene            complement(1640..2698)
                     /gene="hrcA"
                     /locus_tag="VLM17_01375"
     CDS             complement(1640..2698)
                     /gene="hrcA"
                     /locus_tag="VLM17_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HSR64241.1"
                     /translation="MSRRVPDPPSIQPTLDPRARQLLRTLIGRYIRDGEPVGSQTLAR
                     HAGLDVSPATIRNILGDLEELGLLASPHTSAGRVPTAQGYRVFVDSLLQLRPLPDAEL
                     ARLRHELPAGAGTQSLLGNASELLSAMSHFVGVVSAPKREAFAFRHIDFVPLEGQRVL
                     AILVFADNDVQNRVLQTRRVYDASELERVAGYLNQHFAGRPLAEVRATLLHELQAARS
                     EMETLLAHTVELAGQALADGEDDVVLAGQSRLLGVQDLSDLDRLRELFEAFARKREIL
                     QLLERTLRAPGVRIFIGEETGLASLEGMSLVTAPYAAGDRVLGVLGVIGPSRMAYDRV
                     IPVVKAAADVLGAALKAG"
     gene            2836..4500
                     /gene="recN"
                     /locus_tag="VLM17_01380"
     CDS             2836..4500
                     /gene="recN"
                     /locus_tag="VLM17_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017116147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HSR64242.1"
                     /translation="MLRQLAIRDFAVVSATELEFGPGLTVISGETGAGKSLLVDALDF
                     LSGSRADSGIVRHGAERAELSAQFDLGDAPEAAAWLREAELDEGDDCQLRRTLRADGG
                     SRAWINGRPVTLAQLAELAGRLVEIHGQHEHQALLSRSSQLALLDAYGRHEAEATAVR
                     EAAQAWSSLLRERDLLSNQGDVSDRIGWLEHQLGELQRESLEPEAIAELVASHRRHAH
                     SAGLITTCESVVARLAGDEGPALARQLQQVRGELARQAEHEPRLGEVDAMLDSAAIQI
                     DEALSLLEQVRADLDLDPAVFEELDRRLGRLHDLARKHRATPETLAAQRDALFSELEA
                     LQRAGERLRTLDAEIADAAAHWQQAAAALRARRGEAARALSDATTALVAELGMGGRFE
                     VSLEAAETHRPDPNGSERVEFLVAANAGQPPRPLRKVASGGELSRISLAIEVAALGLD
                     AVPSMVFDEVDTGIGGAVAEIVGQKLRALGAKRQVLCVTHLPQVAAQGHAHYRVSKAE
                     HDGVTQSAVQALDAKAREEELARMLGGVEVSKEARAAARRLLRNVA"
     gene            4737..5384
                     /gene="lexA"
                     /locus_tag="VLM17_01385"
     CDS             4737..5384
                     /gene="lexA"
                     /locus_tag="VLM17_01385"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005992377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HSR64243.1"
                     /translation="MSDLTARQQAILDFVRERIAADGLPPTWAEIAQAFGFRQTRAAQ
                     KHLQALAAKGYLTLLPGKARGIRVAGAKASPVAVPRFADVRPSADHLDLPVLGRVAAG
                     MPIGADIGSERRLLLDRTLFATRPDYLLRVEGDSMRDEGILDGDLVAVRRTPDARDGQ
                     VVVARVDGELTIKRLQQREGALRLLPRNPAYPPIDVQPGQDFAIEGVYCGLVRHA"
     gene            5405..6025
                     /gene="imuA"
                     /locus_tag="VLM17_01390"
                     /pseudo
     CDS             5405..6025
                     /gene="imuA"
                     /locus_tag="VLM17_01390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007508429.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0051782 - negative regulation of cell
                     division [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="translesion DNA synthesis-associated protein
                     ImuA"
BASE COUNT          827 a         2304 c         2273 g          923 t
ORIGIN      
        1 agggcgatgc ggcacggccc gatggtggcc tgcacgaggt cctcgaccag cgactcgagc
       61 ttggcccggg tcagcttcat ggcgaggtgc ttcgggccgg aggcatccgc cgtgatgtac
      121 ggcaggttga catcggtctg cgagttgctc gacagctcga tcttggcctt ctcggcggct
      181 tccttcaggc gctggagcgc gagcacgtcc ttcgacaggt cgacgccctg ttccttcttg
      241 aactcggtca ccacgtagtc gatcaggcgc tggtcgaagt cctcgccgcc gaggaaggtg
      301 tcgccgttgg tggacagcac ttcgacctgc atctcgccct cgacgttcgc gatctcgatg
      361 atcgagatgt cgaaggtgcc gccgccgagg tcgtacaccg ccaccttgcg gtcgccggtg
      421 cccttcttgt ccaggccgta ggcgagcgcg gccgcggtcg gctcgttgat gatgcggcgc
      481 acctcgaggc cggcgatcct gccggcgtcc ttggtcgcct ggcgctggct gtcgttgaag
      541 taggcgggca cggtgatgac cgcttcggtc accgtctcgc cgaggtaggc ctcggccgtc
      601 ttcttcatct tctccagcac gcgcgcggac acttccggcg gcgccatctt cctgccatcg
      661 ctggtctcga cccaggcatc gccgttgtcg tgctgggtga tcttgtacgg gacgaggccg
      721 atgtccttct gcacctcggc gtcggtgaac ttgcggccga tcaggcgctt caccgcgtag
      781 agcgtgttct tcggattggt gacggcctgg cgcttggcgg acgcgccgac cagcacctcg
      841 ccgtccttgg tgaaggcgac gatcgacggg gtggtgcgat cgccctccga attctcgatg
      901 acgcgggcct tgccgccctc catgatcgcc acgcacgagt tggtcgtgcc gaggtcgatg
      961 ccgatgatct tggccattgt ggttccctct ccgagctctg gttcgtttgg cgcgctgcgc
     1021 cgatggcggt gatgtggggc ggccgcggcc gccgttcaag gcgggacggg tcagtcgtgg
     1081 cgcgcgacga ccaccagcgc ggggcggagc aaccggtcgt tcagcacgta gcccttctgg
     1141 aagacctggg cgaccgcgcc gggcggcagg ccctcgggct cgaccatgct catcgcctgg
     1201 tggcgctcgg ggtcgaagct gtcgccgcgc gccggcgcga cctcggccag gccgttgccc
     1261 tcggcgatct tgtgcagctg gcgcagggtc agctccatgc cctcgcgcag cgggtcgttc
     1321 tgcgcggcgg cggcgaggcc ggcctccatg ctgtcgaaca gcggcagcaa ctcgccgagc
     1381 aggcgctcgt tggcgaaacg gcgcgcgttg tccatgtcgc ggcccaggcg cttgcgctgg
     1441 ttctcgaggt cggcgcgctc gcgcagcatc tcggcgcgca gctgctcgac ctcggtccgc
     1501 aggctttcca gttccgcggc gagcggattc ccgcccgcgt ccatgccggc ctgcgcgccg
     1561 gcgtcctgca tcgaatcgtt ggtcatgctc cgtccgtccg cggcgaccgc gccgcctgaa
     1621 cgggagcgat gggggccgct cagccggctt tcaaggcggc gccgagcacg tcggccgcgg
     1681 ccttcaccac cgggatgacg cggtcgtagg ccatgcgtga agggccgatc acgccgagca
     1741 cgcccagcac ccggtcgccg gcggcatacg gcgcggtcac cagcgacatg ccctccagcg
     1801 aggcgagtcc ggtctcctcg ccgatgaaga tgcgcacgcc cggcgcgcgc agggtgcgtt
     1861 cgagcaactg caggatctcg cgcttgcggg cgaaggcctc gaacagctcc cgcaggcggt
     1921 cgaggtcgga caggtcctgc acgccgagca ggcggctctg gccggccagc accacgtcgt
     1981 cctcgccgtc ggcgagcgcc tgcccggcca gctcgacggt atgcgccagc aacgtctcca
     2041 tctcgctgcg cgcggcctgc agctcgtgca gcagcgtggc ccggacctcg gccagcgggc
     2101 ggccggcaaa gtgctggttg aggtagccgg cgacgcgctc gagctcgctg gcgtcgtaca
     2161 cgcgccgggt ctgcagcacg cggttctgca cgtcgttgtc ggcgaagacc aggatcgcca
     2221 gcacgcgctg gccttccagc ggcacgaagt cgatgtggcg gaaggcgaag gcctcccgtt
     2281 tcggcgcgct gaccacgccg acgaaatggc tcatcgccga cagcagctcg gacgcgttgc
     2341 cgagcagcga ctgggtgccg gcgccggcgg gcaattcgtg gcgcaggcgt gccagttcgg
     2401 catcgggcaa cgggcgcaac tgcagcagcg agtcgacgaa cacccggtag ccctgcgcgg
     2461 tcggcacgcg gccggccgag gtgtgcggcg aggccagcag gccgagttcc tcgaggtcgc
     2521 cgaggatgtt gcggatggtc gccgggctga cgtcgaggcc ggcgtgccgg gcgagcgtct
     2581 gcgagccgac cggttcgcca tcgcggatgt agcggccgat cagcgtgcgc agcagctggc
     2641 gcgcgcgcgg gtcgagcgtg ggctggatcg agggcgggtc gggcacgcgg cgggacatgg
     2701 ggtcgatata cgggccgcga cgccggggcg caagccgcgc ggcgcggccg attccgaaac
     2761 cggccgggag gctttccgac gccggcccgg cctgccgtcg ctgcgcctga gatggcgatt
     2821 gcttacgcta tcggcatgct gcgccagctc gccatccgcg atttcgccgt cgtctccgcc
     2881 accgagctcg agttcgggcc cggcctcacc gtgatttccg gcgagaccgg ggccggcaag
     2941 tcgctgctgg tcgacgcgct cgacttcctg tccggctcgc gcgccgacag cggcatcgtc
     3001 cgccatgggg ccgagcgcgc cgagctgtcg gcgcagttcg acctgggcga tgcgcccgag
     3061 gccgccgcct ggctgcgcga ggccgaactc gacgaaggcg acgactgcca gctgcgccgc
     3121 accctgcgcg ccgacggcgg ttcgcgcgcg tggatcaacg gccggccggt gacgctcgcg
     3181 caactggccg agctggccgg gcggctggtc gagatccacg gccagcacga gcaccaggcg
     3241 ctgctctcgc gttccagcca gctggcactg ctcgacgcct atggccggca cgaggccgaa
     3301 gccacggcgg tgcgcgaggc ggcgcaggcc tggtcgtcgc tgctgcgcga gcgcgacctg
     3361 ctgtccaacc agggcgacgt ctccgaccgc atcggctggc tggaacacca gctcggcgaa
     3421 ctgcagcggg aatccctgga gccggaggcg atcgccgaac tggtcgccag ccatcgccgc
     3481 cacgcgcatt cggcgggcct gatcacgacc tgcgaatcgg tggtcgcgcg cctcgccggc
     3541 gacgagggcc cggcgctcgc gcgccagctg cagcaggtac gcggcgaact cgcccgccag
     3601 gccgagcacg aaccgcgcct gggcgaggtg gacgcgatgc tcgactcggc ggcgatccag
     3661 atcgacgagg ccctgtcgct gctcgagcag gtgcgcgccg acctcgacct cgatccggcc
     3721 gtcttcgagg aactcgaccg gcgcctcggc cgcctgcacg acctcgcgcg caagcatcgc
     3781 gccacgccgg aaacgctggc ggcgcagcgc gacgcgctgt tctccgagct cgaggccctg
     3841 cagcgcgccg gcgagcggct gcgcacgctg gatgcggaaa tcgccgatgc ggcggcccac
     3901 tggcagcagg ccgccgcggc gctgcgcgcc cggcgcggcg aggccgcgcg ggcgctgtcg
     3961 gatgccacca ccgcgctggt cgccgaactc ggcatggggg ggcgcttcga ggtctcgctg
     4021 gaagccgccg aaacccacag gcccgacccc aacggcagcg agcgggtcga attcctcgtt
     4081 gccgcgaacg ccggccagcc cccccggccg ctgcgcaagg tcgcctccgg tggcgagctc
     4141 tcgcgcatct cgctggcgat cgaggtcgcc gcgctcgggc tggacgcagt gccgagcatg
     4201 gtcttcgacg aagtcgacac cggcatcggc ggcgcggtgg ccgagatcgt cggccagaag
     4261 ctgcgcgcgc tcggtgcgaa acggcaggtc ctgtgcgtga cccacctgcc acaggtcgcc
     4321 gcgcagggcc acgcgcacta ccgggtcagc aaggccgagc acgacggcgt cacccagagc
     4381 gcggtgcagg cgctggacgc gaaggcgcgc gaggaggaac tggcgcgcat gctcggcggc
     4441 gtcgaagtga gcaaggaagc gcgcgcggcg gcccggcggc tgctgcgcaa cgtggcgtaa
     4501 gcaggcttcg tccggcggga cccgcctcgc cccgatgggc gcctgctgct tcgtgcgagc
     4561 cactcgtttc cgcgcctccg cgaccctgca agccatcctc gccatgcggg tgcgcgtggc
     4621 acccgccgca ggcgcgactt gaagggtcgc atccaatgag acacgcaacc cattgaatct
     4681 ccaatgcagc gtcccttttc aggtagtgcg tccgcggagg tactaaaatc cataccatgt
     4741 ccgacctcac cgcccgccag caggccatcc tcgacttcgt ccgcgaacgc atcgcggccg
     4801 acggcctgcc gccgacctgg gcggaaatcg cgcaggcctt cggcttccgc cagacccgcg
     4861 cggcgcagaa gcacctgcag gcactcgcgg cgaagggcta cctgacgctg ctgccgggca
     4921 aggcgcgcgg gatccgggtg gcgggagcga aggcgtcgcc cgtggccgtc ccccggttcg
     4981 cggatgtccg gccgagcgcc gaccacctcg accttcccgt gctcggccgc gtcgccgccg
     5041 gcatgccgat cggcgccgac atcggcagcg agcgccggct gctgctcgac cgcacgctgt
     5101 ttgcgacccg gcccgattac ctgctgcggg tcgaaggcga ttcgatgcgc gacgaaggca
     5161 tcctcgacgg cgacctcgtc gcggtgcgcc gcacgccgga cgcgcgcgac ggccaggtcg
     5221 tggtcgcccg cgtcgacggc gaactgacca tcaagcgcct gcaacagcgc gagggcgcgc
     5281 tgcgcctgct gccgcgcaat cccgcctacc cgccgatcga cgtgcagccc ggccaggact
     5341 tcgccatcga aggcgtctac tgcggcctgg ttcgccatgc atgagcgcga ggcctgagat
     5401 gggcatggcg atcgtcggcg acatcgtggc gctggacgcc ctgctggccg accgccgcgt
     5461 ctggcgcggc cagcccgcgg gcctgccgcc ggccacgcag ccaaccggtt tccccgcgct
     5521 ggacgccgca ttgccctccg gcggctggcc cgagtccgcg ctcaccgaac tgctgttgcc
     5581 ggccgacggc gtcggcgaac tgcgcctgct gctgcccacg ctcgcgcgcc tgacgcaggc
     5641 tgcgcgcgac gtcgtgctgg tcgccccgcc ctacgtgccc taccccgacg gctggcgcca
     5701 ggccggggtc gatttcgccc gcgtgcacct cgtcgacgcc gcgccgcgcg acgcgttgtg
     5761 ggcggccgaa cagtgcctgc gcagcggcag cctcgccgcg gtgctgtgct ggccgcggaa
     5821 agtcgacgac cgcgcgctgc gccgcctcca ggtggcggcg gaaaccgggc aggcgctcgg
     5881 tttcgccttc cgcgacgcgc gcgcggcggt caatccctcg ccggcggcgt tgcgggtgca
     5941 gttcgagcac gccggcgatg ccccgatgcg gctgcacgtg ctgaagtgcc gcggcggcca
     6001 cgcgcctgcg caggcgatcg acctgcatgc gcgacccgcc accacgcagg gcgcgctcgt
     6061 ggcggacacc ggtgccatcg cggcttccgc cgcaatgccc acgcgcgatc cggccggcca
     6121 ggccggcaac gtggtcggct tcccgcacgc cgcgccacgc gccgccacgg aacccgcctg
     6181 atcggacgga ctgccgtgct ctgggcctgc ctgcacttcc cctcgctcgc gctcgacggc
     6241 gtgctgcgcc gccacccgca tcccgggcgc ccgctcgcgc tggtcaccgg cccggcgcag
     6301 cggcgcgtgc tggcggcggt caacccg
//
LOCUS       DATIQC010000065         1517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_287029, whole genome shotgun sequence.
ACCESSION   DATIQC010000065 DATIQC010000000
VERSION     DATIQC010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287029"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..309)
                     /locus_tag="VLM17_01395"
     CDS             complement(<1..309)
                     /locus_tag="VLM17_01395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64244.1"
                     /translation="MPLPCIALCATALLAAMPAQARTLQARIARVGTPVATLEQVRVR
                     LDWPDGAASGRLSLQAARVDAPELGYHFRDLAWQCPLRRDGARWRCAGELRAGRGRAF
                     A"
     gene            375..1091
                     /locus_tag="VLM17_01400"
     CDS             375..1091
                     /locus_tag="VLM17_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR64245.1"
                     /translation="MQPKILLVEDDPVSRAFLAAAVAALPATVDAVTDCAAAERHAVD
                     GGHDLWLIDAHLPDGDGDALLARLRRGAATPALGHTASHDRHELDRLLAAGFLEVLVK
                     PVAPGALRAAIRRALGKPGAIDADTPRQGATPPVWDDEGAIATLKGERAHVEALRRLF
                     LDELPGQRLAVDAALAAGDGDGAAHVLHRLRASCGFVGAAGLAQAVHALEADMHAPAA
                     LRRFDEAVDELLGADPTPAG"
     gene            complement(1088..>1517)
                     /locus_tag="VLM17_01405"
     CDS             complement(1088..>1517)
                     /locus_tag="VLM17_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA repair protein RecO C-terminal
                     domain-containing protein"
                     /protein_id="HSR64246.1"
                     /translation="PRNDPSPELFDAYGAARARLGAGEALAWTLRRFERDLLAAIGLG
                     FDLQLDGDGAPIDPAARYRLDPEHGPRRLLSDRGHDERSAAATGRALLALAADRAPDP
                     DDLAGLRRALRPVLAHHLGGRGLKSWELLGELGRLSAKGD"
BASE COUNT          181 a          596 c          581 g          159 t
ORIGIN      
        1 cgcgaacgcc cggccccggc ccgcgcgcag ttcgcccgcg cagcgccagc gcgcgccgtc
       61 gcgccgcagc ggacactgcc aggcgaggtc gcggaagtgg taacccagct ccggtgcatc
      121 gacccgcgcg gcctgcagcg acagccggcc gcttgccgcg ccgtccggcc agtccagccg
      181 cacccgtacc tgttccaggg tcgccaccgg cgtgcccacc cgggcgatcc gcgcctgcag
      241 cgtgcgcgcc tgcgccggca tggccgcgag cagcgcggtc gcgcacaggg cgatgcaggg
      301 cagtggcatc cggcgtggca tcgctgcagc atagccgggc cggcctgagc ggttcaggtg
      361 gcgaaggagc gccgatgcag ccgaagatcc tgctggtcga agacgacccg gtcagccgcg
      421 cgttcctggc cgccgcggtc gcggcgctgc cggcgacggt ggatgcggtc accgactgcg
      481 ccgccgccga acgccatgcc gtcgacggcg ggcacgacct gtggctgatc gacgcccacc
      541 tgccggacgg cgacggcgac gccctgctcg cccgcctgcg ccggggcgcc gccacgcccg
      601 cgctcggcca caccgccagc cacgaccgcc acgaactcga ccgcctgctc gccgccggct
      661 tcctcgaggt gctggtcaag cccgtcgcgc cgggcgcgct gcgggcggcg atccggcgcg
      721 cactgggcaa gcccggcgcc atcgacgccg acaccccgcg ccaaggcgca acgccgccgg
      781 tgtgggacga cgagggcgcg atcgccacgc tcaagggcga gcgcgcgcac gtcgaggcgc
      841 tgcgccggct gttcctcgat gaactgccgg gccagcgcct cgccgtcgac gccgcgctcg
      901 ccgccggcga cggcgacggc gccgcccacg tgctgcaccg cctgcgcgcg agctgcggct
      961 tcgtcggcgc ggcgggcctc gcgcaggccg tgcacgcgct ggaagccgac atgcatgcgc
     1021 cggccgcgtt gcgccgcttc gacgaagcgg tcgacgaact gctcggcgcg gacccgaccc
     1081 cggccggtta gtcgcctttc gcggacaggc ggccgagttc gcccagcagc tcccaggatt
     1141 tcaggccgcg cccgccgaga tggtgggcga gcaccgggcg cagcgcccgg cgcaggccgg
     1201 cgaggtcgtc ggggtccggc gcgcgatcgg cggcgagcgc cagcagcgcg cgcccggtgg
     1261 cggcggcgct gcgctcgtcg tggccgcggt cgctgagcag gcggcgcggg ccgtgctcgg
     1321 gatccaggcg gtagcgcgcg gccgggtcga tcggcgcgcc atcgccgtcg agctggaggt
     1381 cgaagccgag gccgatcgcg gcgagcaggt cgcgctcgaa gcggcgcagc gtccacgcca
     1441 gcgcttcgcc cgcgccgagc cgcgcgcgcg cagccccgta ggcgtcgaac agctcgggcg
     1501 agggatcgtt gcgcggc
//
LOCUS       DATIQC010000066         2625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_4588, whole genome shotgun sequence.
ACCESSION   DATIQC010000066 DATIQC010000000
VERSION     DATIQC010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2625
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4588"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1791)
                     /gene="gspD"
                     /locus_tag="VLM17_01410"
     CDS             complement(<1..1791)
                     /gene="gspD"
                     /locus_tag="VLM17_01410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
                     /protein_id="HSR64247.1"
                     /translation="MNRPSFHRASARVLLLASLAGLLAACASVSTPVIKREAQLQRAP
                     VAGTPADANTRAQAEPLPPEHAGPVPVIRRGTGQVINRSAASAPPPNIGGTSGAATFN
                     FEGESLPAVVKAILGDMLGQNYVIAPGVQGTVTLATPKPVSPAEAMSLLEMVLGWNNA
                     RMVYSDGRYNIVPADQSLAGTVAPRTGSAALARGFESRVVPLKYVSAAEMEKILKPYA
                     RKDSIVNVDGGRNTITVAGTRAELENYLRTIQIFDVDWMSSMSVGVFPLQSGKASDVV
                     ASLEKVFGEQSKSPVAGMFRFMPLEAANAVLVITPQADYLDDIQQWLERIDGAGSGVQ
                     LFSYELKYIKAKDLADRLAEVFGGSPGRGQQATGGPSLMPGLNSTEIRDSGVDNSSGI
                     SSATIGGNTPGGTGGDMGGGTGGATGTLSLPQAASGNGAVTLQVNGDRVGVSAVEETN
                     SLLVRATPQAWKSIKEVVERLDVMPMQVHIEAQVATVDLKGALTYGVNWYFEHAVGSM
                     PAVPGLTQADLLARAQGRNIWGDIAGSINPLNGLGWTFLGRNAGAVINALDEVTDVHV
                     LQTPSVVVRNNAEAMLNVGARIPIASVTFNP"
     gene            complement(1815..>2625)
                     /locus_tag="VLM17_01415"
     CDS             complement(1815..>2625)
                     /locus_tag="VLM17_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64248.1"
                     /translation="TCARGRRRWGWRVRVDGAAPRTWLLAAVAAWALLAWLLAMAGMG
                     AHVALLPADPALRQSLPAPRPSPPDRIGPLAQYAEIGARPLFSEDRRPQPFVIQSEGG
                     EAAPADTFDYVLTSVLITPQVQLAIVQPGNGGKPVSFHLGQSAEDLPNWRLVTLNPRS
                     AVFEGPGGQKSLDLRVWSGGTGPAGAVPATNAVSDADATPAPAATAPAPLPAPPPPPP
                     ASDASRLDTAPAQDKDEDARAKQQMDAIRKRIEERRAQLRREAQQPPGSNP"
BASE COUNT          312 a          915 c         1000 g          398 t
ORIGIN      
        1 cgggttgaag gtgaccgagg cgatcgggat gcgtgcgccg acgttgagca tcgcctcggc
       61 gttgttgcgc accaccaccg acggcgtctg cagcacgtgc acgtcggtca cttcgtccag
      121 cgcgttgatc accgcgccgg cgttgcggcc gaggaaggtc cagccgaggc cgttgagcgg
      181 gttgatgctg ccggcgatgt cgccccagat gttgcggccc tgcgcgcgcg cgagcaggtc
      241 ggcctgggtc aggccgggca cggccggcat gctgccgacg gcgtgctcga agtaccagtt
      301 gacgccgtag gtgagcgcgc ccttgaggtc gacggtcgcc acctgcgcct cgatgtgcac
      361 ctgcatcggc atcacgtcga ggcgttcgac gacctccttg atcgacttcc acgcctgcgg
      421 ggtggcgcgc accagcaggc tgttggtctc ctccaccgcc gacacgccga cgcggtcgcc
      481 gttgacctgc agggtgaccg cgccgttgcc gctggccgcc tgcggcagcg agagcgtgcc
      541 ggtggcgccg ccggtgccgc cgcccatgtc gccgccggtg ccgccgggcg tgttgccgcc
      601 gatggtcgcg ctgctgatgc cgctgctgtt gtccacgccg ctgtcgcgga tctcggtcga
      661 gttgagcccc ggcatcaggc tcggcccgcc ggtggcctgc tggccgcggc cggggctgcc
      721 gccgaacacc tcggcgagcc ggtcggcgag gtccttggcc ttgatgtact tgagctcgta
      781 ggagaacagc tgcacgccgc tgccggcgcc gtcgatgcgc tcgagccact gctggatgtc
      841 gtccaggtag tcggcctgcg gggtgatcac cagcaccgcg ttggccgcct ccagcggcat
      901 gaagcggaac atcccggcga ccggcgactt gctctgctcg ccgaacacct tctcgagcga
      961 ggcgaccacg tcgctggcct tgcccgactg cagcgggaac accccgaccg acatcgagga
     1021 catccagtcg acgtcgaaga tctggatcgt gcgcaggtag ttctcgagct cggcgcgggt
     1081 gccggcgacg gtgatcgtgt tgcggccgcc gtcgacgttg acgatcgaat ccttgcgcgc
     1141 gtacggcttg aggatcttct ccatctccgc ggcggagacg tacttcagcg gcacgacccg
     1201 cgactcgaag ccgcgcgcga gcgcggcgct gccagtgcgc ggcgcgaccg tgccggcgag
     1261 cgactggtcg gccggcacga tgttgtagcg gccgtcgctg tagaccatgc gcgcgttgtt
     1321 ccagccgagc accatctcca gcaggctcat cgcctcggcc gggctgaccg gcttgggcgt
     1381 ggcgagcgtc accgtgccct gcacgcccgg cgcgatcacg tagttctggc cgagcatgtc
     1441 gccgaggatc gccttgacca ccgccggcag cgattcgccc tcgaagttga acgtcgccgc
     1501 gccgctggtg ccgccgatgt tgggcggcgg cgcgctggcg gcgctgcggt tgatcacctg
     1561 gccggtgccg cggcggatca ccggcaccgg gccggcatgt tcgggcggca gcggctcggc
     1621 ctgcgcgcgg gtgttggcgt cggcgggcgt gccggccacc ggcgcgcgct gcagttgcgc
     1681 ctcgcgcttg atgaccggcg tggacacgct ggcgcaggcg gccaacaggc cggcgagcga
     1741 ggcgaggagc aggacgcggg cgctggctcg gtggaagctg ggtcggttca tgctgtcact
     1801 cgggtggcgg ccggtcaggg attgctgccg ggcggctgct gggcttcgcg gcgcagctgc
     1861 gcgcgccgct cctcgatgcg tttgcggatc gcgtccatct gctgcttggc gcgcgcgtcc
     1921 tcgtccttgt cctgggccgg ggcggtgtcc aggcggctgg cgtcgctggc cggcggcggc
     1981 ggcggcggcg ccggcagcgg ggcaggcgcg gtggcggcgg gcgcgggggt ggcgtcggca
     2041 tcgctgaccg cgttggtcgc cggcacggcg ccggccggcc cggtgcctcc actccagacc
     2101 cgcaggtcga gcgacttctg cccgcccggg ccttcgaaca ccgcactgcg cgggttgagc
     2161 gtgaccagcc gccagttcgg caggtcctcg gccgactggc cgaggtggaa gctgaccggc
     2221 ttgccgccgt tgcccggctg cacgatcgcg agctgcacct gcggggtgat caggacgctg
     2281 gtcagcacgt agtcgaaggt gtcggcgggc gcggcctcgc cgccttcgga ctggatcacg
     2341 aacggctggg gccggcgatc ctcggagaac agcgggcgcg cgccgatctc ggcgtactgc
     2401 gcgagcggac cgatgcggtc gggcggcgaa gggcgcggcg ccggcagcga ctggcgcaac
     2461 gcggggtcgg ccggcagcag agcgacgtgt gcgcccatgc ccgccatcgc cagcagccag
     2521 gccagcagcg cccacgccgc gaccgcggcg agcagccagg tgcgcggcgc ggcgccgtca
     2581 acgcgcacgc gccaccccca tcgcctgcgg ccgcgggcgc aggta
//
LOCUS       DATIQC010000067         4952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_463830, whole genome shotgun sequence.
ACCESSION   DATIQC010000067 DATIQC010000000
VERSION     DATIQC010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4952
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463830"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VLM17_01420"
     CDS             complement(<1..231)
                     /locus_tag="VLM17_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64249.1"
                     /translation="MTPLSPSTLSPLLLTVAVAFAYYRRIRRQFGRQPFQPRRTLART
                     VLLGLALVGLLVAASTLPVAGTAVAIGAGLAVG"
     gene            complement(250..1230)
                     /locus_tag="VLM17_01425"
     CDS             complement(250..1230)
                     /locus_tag="VLM17_01425"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR64250.1"
                     /translation="MKACLAVLLLAASAAAFALPPQVELDRLMLHAGTALDAKAYGEA
                     LEQLAQARRLGLALPEHFALEQATALAGLGEATEAKAVLDAYFNRYGTRGASYAPALA
                     LLVRIETGQVDARNAASAATAPAAPVDPLAKWGLTDDDLSLRLGSDIAAKVHLAERRP
                     EVLAAAQAGDVVAQYLVAVAYTYGIGVAADPAQAYAWATRAADGGLVRALGVVGVDRI
                     LGSGTDADMVSGWALLLQAANAGNGIARYQTAILTLRNGYKFIERPTALAMLKRCAEQ
                     GIAPAQYALGHAYLQTTDDQRQDLALARYWLQKAAAQGVQEAAADLAALR"
     gene            complement(1283..2407)
                     /locus_tag="VLM17_01430"
     CDS             complement(1283..2407)
                     /locus_tag="VLM17_01430"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR64251.1"
                     /translation="MPAFRKSFACAACVAALSIANTVQAARPALPKDASGLLDGISAD
                     SMRGHLSFLASDALEGRGTPSRGLDVAAEYIAAQFRRAGLEPLGDDGYFQTADWREIA
                     PARERATFADAPAPLVVRNVAGVLRGSDPRLRDTYILVTAHYDHVGMREGSGDQLFNG
                     ANDDGSGTVSVIELANAFAAQKTRPRRSIVFMTVFGEEHGLVGSRYYGAHPLVPVEKT
                     VADINLEQVGRTDDSEGPQVRAAAVTGFDYSDVGPVLRRAGELTGTRITRHPVNSDRY
                     FAYSDNQALADLGVPAHTISVAYEFPDYHGVADTWDKIDYANMAAIDRTVALAVLAIA
                     NDAQVPRWNAANPLAAKYLDAARARGEGSALPPEPARMAR"
     gene            complement(2518..2985)
                     /locus_tag="VLM17_01435"
     CDS             complement(2518..2985)
                     /locus_tag="VLM17_01435"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HSR64252.1"
                     /translation="MGQIMRASAGAGLAWLLLALSTGAMATPSDAALRADVRRANAEW
                     AEAMKTGDAAVIAAPYTDDAVFVLADGSSVRGRAAIEAMYRDGFGKGGTAHTTAIASA
                     SLVRDGDLAYESGGADVGVLRDGKPVTRHGRYLTVWQRQGDGHWKIVRNLVLP"
     gene            complement(3108..4226)
                     /locus_tag="VLM17_01440"
     CDS             complement(3108..4226)
                     /locus_tag="VLM17_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64253.1"
                     /translation="MPDGELQIQSGALIAHRLLDVADAIDLAQAETLWRAHAGGEGRR
                     TRLETASANELAFEVPPTLLALPAIAIALDDQVATAEMTARLYDFGAIAIALRVDAGG
                     LPWAAFAARCNALDRATGPASGSPLWHDALRGVLDVIAPALRRPAAQHLEEDYLFAGV
                     QRFAQAMTGEQVRAQADLSALLSGETRPLSAQEAGELTAQAFSYFADDLVVLTWDRAF
                     VYEPRGAADVIDILEVANAQLLEMRYYDELLDDELATMYDLVAGARGGLSLVASRRAV
                     RLARRLHGLVAEVTALTEKVENSLQVTEDVYLARVYGAALEQFRVSRLSEAVDRKLAI
                     IRDTYGALYEEASSRRAELLELAIVLLIVFEIVLALAR"
     gene            4396..4914
                     /locus_tag="VLM17_01445"
     CDS             4396..4914
                     /locus_tag="VLM17_01445"
                     /inference="COORDINATES: protein motif:HMM:NF027286.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4760 domain-containing protein"
                     /protein_id="HSR64254.1"
                     /translation="MDLGTLAELTSAGAVVIGLLFAVVQLRQFRRIQEREAGLALLRS
                     YQTRTFARALLIVFDLPAGLSKADVEARVGAEIATLYALMTTWESLGILVQRGQVDLA
                     MVDDFFSGPILLTWQKLHPYVDEQRGQLQRDTIWEWFQWLAERMLEREAATPPVPAHI
                     AHRHWIAGHRGR"
BASE COUNT          642 a         1811 c         1825 g          674 t
ORIGIN      
        1 gccgacggcg agcccggcgc cgatcgccac cgccgtgccc gcgaccggca gcgtggacgc
       61 cgccaccagc aggccgacca gcgcgaggcc cagcagcacc gtgcgcgcca gcgtgcgccg
      121 cggctggaag ggctggcgcc cgaactggcg gcggatgcgg cggtagtacg cgaaggcgac
      181 cgcgacggtg agcagcagcg gcgagagcgt cgaaggcgag agcggcgtca tgcggtgtcc
      241 cctggtgtcc tatcgcagcg cggcgaggtc cgccgccgct tcctgcacgc cctgcgccgc
      301 cgccttctgc agccagtagc gggccagggc caggtcctgg cgctggtcgt cggtggtctg
      361 caggtacgca tggccgagcg cgtactgcgc cggcgcgatg ccctgctcgg cgcagcgctt
      421 cagcatcgcc agcgcggtcg gccgctcgat gaacttgtag ccgttgcgca gggtgaggat
      481 cgcggtctgg tagcgggcga tgccgttgcc ggcgttggcc gcctgcagga gcagcgccca
      541 gccgctgacc atgtcggcgt cggtgccgct gccgaggatg cgatccacgc cgaccacgcc
      601 cagtgcgcgc accagcccgc cgtcggccgc gcgggtcgcc cacgcgtagg cctgcgcggg
      661 gtcggcggcg acgccgatgc cgtaggtgta ggccacggcg accaggtact gcgcgaccac
      721 gtcgccggcc tgcgccgcgg cgagcacctc cgggcggcgt tcggccaggt gcaccttggc
      781 ggcgatgtcg ctgcccagcc gcagcgacag gtcgtcgtcg gtgaggcccc atttcgccag
      841 cggatcgacg ggagccgcgg gcgccgtcgc cgcggacgcc gcgttgcgcg cgtccacctg
      901 gccggtttcg atccgcacca gcagcgccag cgccggcgca tacgacgcgc cccgggtgcc
      961 gtagcggttg aagtacgcgt cgagcacggc tttcgcttcg gtggcctcgc cgaggccggc
     1021 cagcgccgtc gcctgctcca gcgcgaagtg ttccggcagc gccagcccca gcctgcgcgc
     1081 ctgcgccagc tgctcgagcg cctcgccgta cgccttcgcg tcgagcgcgg tcccggcatg
     1141 cagcatcagc cggtccagtt ccacctgcgg cggcagcgcg aaggccgcgg cggaggcggc
     1201 cagcaacagc acggcgaggc aggccttcat catcgcgacg ctcctggcgg gtggcaacgc
     1261 gcgggcacga aaccgttgcc ggtcaccgcg ccatgcgcgc cggctccggc ggcagcgcgc
     1321 tgccctcgcc gcgcgcgcgc gccgcgtcga ggtacttcgc ggccagcggg ttggcggcgt
     1381 tccagcgcgg cacctgcgcg tcgttggcga tggccagcac cgccagcgcc accgtgcggt
     1441 cgatcgccgc catgttggcg tagtcgatct tgtcccaggt gtcggcgacg ccgtggtagt
     1501 cggggaattc gtaggcgacg ctgatcgtgt gcgcgggcac gccgaggtcg gcgagcgcct
     1561 ggttgtcgct gtaggcgaag tagcggtcgc tgttgaccgg atggcgggtg atgcgcgtgc
     1621 cggtgagctc gccggcccgg cgcagcaccg ggccgacgtc ggaatagtcg aagccggtga
     1681 ccgcggccgc gcgcacctgc gggccttcgc tgtcgtcggt gcggccgacc tgctcgaggt
     1741 tgatgtcggc gacggtcttc tccaccggca ccagcggatg cgcgccgtag tagcgcgacc
     1801 cgaccagtcc gtgctcctcg ccgaacacgg tcatgaacac gatgctgcgc ctgggccgcg
     1861 tcttctgcgc ggcgaacgcg ttggccagct cgatcaccga caccgtgccg ctgccgtcgt
     1921 cgttggcgcc gttgaacagc tggtcgccgc tgccctcgcg catgccgacg tggtcgtagt
     1981 gcgcggtgac caggatgtag gtgtcgcgca gtcgcggatc cgagccgcgc agcacgccgg
     2041 cgacgttgcg cacgaccagc ggcgccggcg cgtcggcgaa cgtcgcgcgt tcgcgcgccg
     2101 gcgcgatctc gcgccagtcg gcggtctgga agtagccgtc gtcgcccagc ggctcgaggc
     2161 cggcgcgacg gaactgcgcg gcgatgtatt cggcggcgac gtcgagcccg cgcgagggcg
     2221 tgccgcggcc ttccagcgcg tcggacgcga ggaaggacag gtggccgcgc atcgaatcgg
     2281 ccgagatgcc gtcgagcagg ccgctggcgt ccttcggcag cgcgggccgg gccgcctgca
     2341 cggtgttggc gatggacagt gccgccacgc aggcggcgca cgcgaacgac ttccggaagg
     2401 ccggcatcgg catctcgctg ttggaatccc cgtccgtctt gtaccaccgt cgcgcggcga
     2461 cggcatcggc cggtggacct gccggggtcc ggcgccggcc ggcagccggc gcggggctca
     2521 aggcagcacg aggttgcgca cgatcttcca gtggccgtcg ccctgccgct gccacaccgt
     2581 caggtagcgg ccgtggcggg tgaccggctt gccgtcgcgg agcacgccga cgtcggcgcc
     2641 gccggattcg taggcgaggt cgccgtcgcg caccaggctg gcggaagcaa tcgcggtcgt
     2701 atgcgcggtg ccgcccttgc cgaagccgtc gcggtacatc gcctcgatcg cggcgcgacc
     2761 gcgcacgctg ctgccgtcgg cgagcacgaa caccgcatcg tcggtatacg gcgcggcgat
     2821 caccgccgcg tcgccggtct tcatcgcctc cgcccattcg gcgttggcgc ggcgcacgtc
     2881 cgcgcgcagc gcggcgtcgg aaggcgtcgc catcgcgccg gtgctcaggg cgaggagcag
     2941 ccaggccagg cccgctccgg ccgacgcccg catgatctgg cccatcggaa cgctccgcgc
     3001 atgcggccga ccgccgccca cgcaagtcta ggtccggagc cgccgcgcgg atgtgcggga
     3061 attgcgcgtc cgtcgttgcc ggccgggacg tgcgcttcgc cccccgctca cctggccagg
     3121 gccagcacga tctcgaacac gatcagcagc acgatcgcca gttccagcag ctcggcgcgg
     3181 cggctggacg cctcttcgta cagggcgccg taggtgtcgc ggatgatcgc gagcttgcgg
     3241 tccaccgctt cgctcagccg cgacacgcgg aactgttcga gcgcggcgcc gtacacgcgg
     3301 gccaggtaga cgtcctcggt cacctgcagc gagttctcga ccttctcggt gagcgcggtc
     3361 acttccgcca ccagcccatg cagccggcgc gccaggcgca cggcgcggcg cgaggccacc
     3421 agcgacagcc cgccgcgcgc gcccgcgacc aggtcgtaca tggtcgccag ctcgtcgtcc
     3481 agcagctcgt cgtagtagcg catctccagc aactgcgcgt tggcgacctc gaggatgtcg
     3541 atgacgtcgg cggcgccgcg cggctcgtac acgaaggcgc ggtcccaggt gagcacgacg
     3601 aggtcgtcgg cgaagtagga aaacgcctgc gcggtgagct ccccggcctc ctgcgcggac
     3661 aacggccggg tctcgccgga cagcagggcg gacaggtccg cctgcgcgcg cacctgctcg
     3721 ccggtcatcg cctgcgcgaa gcgctggacc ccggcgaaca ggtagtcctc ctccaggtgc
     3781 tgcgccgccg gccgccgcag cgccggcgcg atcacgtcga gcacgccgcg cagcgcgtcg
     3841 tgccagagcg gcgagcccga ggcgggaccg gtcgcgcggt cgagcgcgtt gcagcgcgcc
     3901 gcgaacgccg cccacggcag tccgccggcg tccacgcgca acgcgatcgc gatcgcgccg
     3961 aagtcgtaca ggcgcgcggt catctccgcc gtcgcgacct ggtcgtcgag cgcgatggcg
     4021 atcgcgggca aggccagcag cgtcggcggc acctcgaacg ccagctcgtt cgccgaggcc
     4081 gtctcgagtc gggtgcgccg gccctcgccg cccgcgtgcg cgcgccacag cgtttcggcc
     4141 tgcgcgaggt cgatcgcgtc ggcgacgtcc agcagccggt gggcgatcag ggcgccggac
     4201 tggatctgca gttcgccgtc gggcatgggg gctccggggg caggaggtcg cgcagggcag
     4261 catagacagc ggccgtggaa gccgccgaca cacgtcgctc acgcggccgg ctggatggcc
     4321 tccgcccctt tcccgggcgg ccgcctggac gcgcgccgct cgttggcctc gtcaggcgtc
     4381 ccgcccgagc cggtcatgga tctaggcacc ctcgcggaac tgacctcggc cggcgcggtg
     4441 gtgatcggcc tgctgttcgc cgtcgtccag ctccggcagt tccgccgcat ccaggagcgc
     4501 gaggccggcc tcgccctgct gcgctcgtac cagacgcgca cctttgcgcg ggcgctgctg
     4561 atcgtcttcg acctccccgc cggcctgtcg aaggcggacg tcgaggcgcg cgtcggcgcg
     4621 gagatcgcca cgctctacgc cctgatgacg acctgggaaa gcctcggcat cctggtccag
     4681 cgcggccagg tggacctcgc catggtcgac gacttcttca gcgggccgat cctgctgacc
     4741 tggcagaagc tgcaccccta cgtcgacgag cagcgcggcc agttgcagcg cgacacgatc
     4801 tgggaatggt tccagtggct cgccgagcgg atgctggagc gcgaagcggc gacgccgccg
     4861 gtgcccgccc acatcgcgca ccggcactgg atcgccggcc atcgcggccg gtaagccggg
     4921 cgacgcggat cggagcaatt gcggaacagg ca
//
LOCUS       DATIQC010000068         4776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_4609, whole genome shotgun sequence.
ACCESSION   DATIQC010000068 DATIQC010000000
VERSION     DATIQC010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4609"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..417)
                     /gene="minC"
                     /locus_tag="VLM17_01450"
     CDS             complement(<1..417)
                     /gene="minC"
                     /locus_tag="VLM17_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012438972.1"
                     /note="blocks the formation of polar Z-ring septums;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HSR64255.1"
                     /translation="MAATSFDYEQAGELKIGQVGIANLRVRTLDVDKLAAEMRERVAR
                     APKLFERAAVIVDFGGLAATPDAATARALVDALRAAGVLPVALAYGSSENEQLAIALG
                     LPLLAKFRAQYESAAAAPAAPARAPEPPPAPAPRAAP"
     gene            complement(420..1016)
                     /locus_tag="VLM17_01455"
     CDS             complement(420..1016)
                     /locus_tag="VLM17_01455"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64256.1"
                     /translation="MSIAIRDVREHELDSVLALNNAAGPAILPLDAARVREFHEQAEY
                     FRVAERDGALAGFLVGFGAGSGHDSDNFRWFRERHPQFFYIDRIAVASRRRGGGVGRA
                     FYADVQSYAELRYPQLACEVFLEPGTDPALLFHGSFGFREVGQHVMAGNGRRAAMLMK
                     ELCSYPWVRETYGARLPAAPWVGAPRHPASLDQRATGT"
     gene            1258..2508
                     /locus_tag="VLM17_01460"
     CDS             1258..2508
                     /locus_tag="VLM17_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017171659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSR64257.1"
                     /translation="MFARLNHSRLLRYAGLFTWAVIGMPLLLLALMPAEQPGGLGEEA
                     VGGAHIGWLAWGAYAAFGLCYGWLTRALGSRRVGAFDYFLLVLLTASAVAISYYSASG
                     LGSILLMVAACVLPWLLPLPVGVAWLVLSEFLVVPVYVRWLDMSWLEALMQSLLYAGF
                     SGFVFVTSLVARQQAQAREDQRRLNAELRATRALLAESARVNERTRISRELHDLLGHH
                     LTALSLNLEVAGHLVEGQAQEHVNQAHTLARLLLSDVREAVSQLRDDDAIDMAATLRP
                     LADHVAGLAIDMELPDPFLLEDPERAHVLLRCTQEIITNAVRHAQATRLLLRYAFEGR
                     TVRLQARDDGRGAESPAAGNGLRGMRERLAAHGGTVEIETSPQRGFGLDIRLPMDERP
                     VPLARPEPVRVPPSLPATPPGEAA"
     gene            2505..3161
                     /locus_tag="VLM17_01465"
     CDS             2505..3161
                     /locus_tag="VLM17_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64258.1"
                     /translation="MIRICLVDDQTLVRQGIRSLLALADGMEVVGECGDGRQAVELIP
                     QLKPDVVLMDMRMPVMSGLEALQALTRMGALPPTIILTTFDDDQLVMAGLKAGAKGYL
                     LKDVSLEQLVGAIQTVAAGGSEVQPAVTQRLLSGLEHMRNDFVSLDRPDPLTDRETEI
                     LRLMASGFSNKEIANSLGVAEVTIKNHVSNILSKLGVRDRTRAVLKAFELKLVQGATP
                     "
     gene            3310..4392
                     /locus_tag="VLM17_01470"
     CDS             3310..4392
                     /locus_tag="VLM17_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005415686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HSR64259.1"
                     /translation="MTRLIEIVISLAIVAALFLVVGLVLPSHRHLSEQVETNRKLTIV
                     YDTLDSFRRFKDWNPLVLRDPRMKVQLSGPDSGVGATLSYSSEHPQLGDGSYKITAAE
                     PGQRITYGIENAQRGGDKKTTFSFKPTGHAGRNVLITQTYDVDYGWDLLGRYAGMYVR
                     SHVGDDMKLGLQRLTNMLASVPNADYRAQGVRIGDLKIVDRPAEDLLVVNAGAIARDQ
                     DKLKAAMNADMEWIKRSIDASGLTAAGPMRIVSTEFGTQNYTFDVVVPVRRGGDATAV
                     AADVPLTGLKLQGPVKYVHAGPVRAASASYTGYMMELENAHNMLRAWALTNGYEVIDR
                     PYEVYRNGVEGAFSEDGQFEMYWNIK"
     gene            4440..4694
                     /locus_tag="VLM17_01475"
     CDS             4440..4694
                     /locus_tag="VLM17_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64260.1"
                     /translation="MSRFRGLQRQMDAATPPPTKSPLAACGALCAGAAVALAAYAAHA
                     RIGTGQVLLQTAAALLFGNGVALAALARGTCCLLFLTAGC"
BASE COUNT          700 a         1675 c         1685 g          716 t
ORIGIN      
        1 gggcgccgcg cgcggcgcgg gcgccggcgg cggttcgggc gcgcgggccg gcgcggcggg
       61 cgccgcagcg gcggattcgt actgggcgcg gaacttggcc agcagcggca ggccgagcgc
      121 gatcgcgagc tgctcgttct cgctgctgcc gtaggccagc gcgaccggca gcaccccggc
      181 cgcgcgcagc gcatcgacca gggcgcgcgc ggtggcggca tcgggcgtcg cggccaggcc
      241 gccgaaatcg acgatcaccg cggcgcgctc gaacagcttg ggcgcgcgcg ccacccgctc
      301 gcgcatctcg gcggcgagct tgtccacgtc cagggtgcgc acgcgcaggt tggcgatgcc
      361 gacctggccg atcttgagtt cgcccgcctg ctcgtagtcg aaggaggtcg cggccatcgt
      421 caggtccccg tcgcgcgctg gtcgagggag gccggatggc gcggtgcgcc gacccacggc
      481 gcggcgggca ggcgcgcgcc ataggtctcg cgcacccagg ggtagctgca gagttccttc
      541 atcagcatcg ccgcgcggcg gccgttgccg gccatcacgt gctggccgac ctcgcggaag
      601 ccgaagcttc cgtggaagag cagggcgggg tcggtgccgg gctcgaggaa cacctcgcag
      661 gcgagctgcg gatagcgcag ctcggcgtag ctctgcacgt cggcgtagaa cgcccggccg
      721 acgccgccgc cgcggcggcg gctcgccacc gcgatgcggt cgatgtagaa gaactgcgga
      781 tgccgctcgc ggaaccagcg gaagttgtcg ctgtcatgcc cgctgccggc gccgaatccg
      841 accaggaatc cggccagcgc gccgtcgcgt tcggccacgc ggaagtattc ggcctgctcg
      901 tggaactcgc gcacgcgggc cgcgtcgagc ggcaggatcg cggggccggc ggcattgttg
      961 agggcaagga cggaatccag ctcgtgctcg cgcacgtcgc ggatggcgat cgacattccc
     1021 gactcccggt gtttcgacta cggacgctgt cggacgcgcg caaccccacg cccgcatgtt
     1081 ttcctgttcc cacggggaat tatcgcatgc ggcccgtggc gggtgggccg gcaggcgcgc
     1141 accggcgcct ccgtcgggca ggggttcagg cggggcgtgg caggcgcgcg cagcggcacc
     1201 cgccgggcat gacttccggc gtgcagcggc tccgcacctt tgtgcctaag atgcggcatg
     1261 ttcgcgcgcc tgaaccatag ccgtttgctg cgctacgccg gcctgttcac gtgggcggtg
     1321 atcggcatgc cgctgctgct gctggcgctg atgccggccg agcagcccgg tgggctcggc
     1381 gaggaggcgg tgggcggcgc gcacatcggc tggctggcgt ggggcgcgta cgcggccttc
     1441 ggcctctgct acggctggct cacccgtgcc ctcggcagtc ggcgggtcgg cgcgttcgac
     1501 tatttcctgc tggtcctgct gaccgccagc gcggtggcga tcagctatta cagcgcgagc
     1561 ggactcggca gcatcctgct gatggtcgcc gcgtgcgtgc tgccgtggtt gctcccgttg
     1621 ccggtcggcg tcgcctggct ggtgctgagc gagttcctgg tggtgccggt gtacgttcgc
     1681 tggctcgaca tgtcgtggct ggaagcgctg atgcagtcgc tgctgtacgc gggcttctcc
     1741 ggcttcgtgt tcgtcaccag cctggtcgcg cgccagcagg cgcaggcgcg ggaggaccag
     1801 cgccggctca acgccgagct gcgcgcgacc cgggcgttgc tggcggaaag cgcgcgcgtc
     1861 aacgaacgca cgcggatctc gcgggagctg cacgacctgc tcggccacca cctgaccgcg
     1921 ctcagcctca acctcgaggt cgccggccac ctggtcgagg ggcaggccca ggagcacgtc
     1981 aaccaggcgc acacgctcgc ccgcctgctg ctcagcgacg tgcgcgaggc ggtgagccag
     2041 ctgcgcgacg acgacgcgat cgacatggcg gcgacgctgc gcccgctcgc cgaccacgtc
     2101 gccgggctgg cgatcgacat ggaactgccg gatccgttcc tgctcgagga tcccgagcgc
     2161 gcgcacgtgc tgttgcgctg cacgcaggaa atcatcacca atgccgtgcg ccacgcgcag
     2221 gcgacgcggc tgctgctgcg ctatgcgttc gagggccgca cggtgcgcct gcaggcgcgc
     2281 gacgacggcc gcggcgcgga atcgcccgcg gccggcaacg gcctgcgcgg catgcgcgag
     2341 cggctcgcgg cccacggcgg cacggtcgag atcgagacca gcccgcagcg cggtttcggc
     2401 ctcgacatcc gcctgccgat ggacgagcgg cccgtcccgc tggccaggcc ggagcccgtc
     2461 cgcgtcccgc cttcccttcc cgcgacgccc cccggagagg ccgcatgatc cgcatttgtc
     2521 tcgtcgacga tcagaccctg gtgcgccagg gcatccgttc gctgctggcg ctcgccgacg
     2581 gcatggaggt ggtgggcgaa tgcggcgacg ggcgccaggc cgtcgagctg atcccgcagc
     2641 tcaagcccga cgtggtgctg atggacatgc gcatgccggt gatgtccggg ctggaggcgc
     2701 tgcaggcgct gacccgcatg ggcgcgctgc cgccgaccat catcctcacc accttcgacg
     2761 acgaccagct ggtgatggcc gggctcaagg cgggcgcgaa gggctacctg ctcaaggacg
     2821 tctcgctcga gcagctggtc ggcgcgatcc agaccgtcgc cgccggcggc tcggaagtgc
     2881 agccggcggt gacccagcgc ctgctctcgg ggctggagca catgcgcaac gacttcgtca
     2941 gcctcgaccg gcccgacccc ctcaccgacc gcgagaccga gatcctgcgc ctgatggcct
     3001 cgggcttctc caacaaggag atcgccaact cgctgggggt ggccgaggtc acgatcaaga
     3061 accacgtgtc caacatcctt tccaagctcg gggtgcgcga ccggacccgc gccgtgctca
     3121 aggccttcga gctcaagctg gtccagggcg cgacgccctg aggcgggagc gcgacggact
     3181 tcacgacacc ggcgcgcagc cgccaatccg ggccatcggg atgctgccgg ccgcaagggc
     3241 ttcttgctac gattagaggt ctgcgccttg gccagcggcc gggcggggcc tgccccctgg
     3301 agatgcctga tgacccgttt gatcgaaatc gtgatttccc tggcgatcgt cgccgcgctg
     3361 ttcctggtcg tcgggctcgt gctgccctcg caccgccacc tcagcgagca ggtggagacc
     3421 aaccgcaagc tgacgatcgt ttacgacacc ctcgacagct tccgccgctt caaggactgg
     3481 aacccgctgg tgctgcgcga tccgcgcatg aaggtccagc tctccggccc cgactccggc
     3541 gtcggcgcca ccctgagcta cagctccgag catccgcagc tgggtgacgg cagctacaag
     3601 atcaccgccg ccgagccggg ccagcggatc acctacggca tcgagaacgc gcagcgcggc
     3661 ggcgacaaga agaccacctt ctcgttcaag ccgaccggcc acgccggccg caacgtcctg
     3721 atcacgcaga cctacgacgt cgattacggc tgggacctgc tcggccgcta cgccggcatg
     3781 tacgtgcgca gccatgtcgg cgacgacatg aagctcggcc tgcagcgcct gaccaacatg
     3841 ctcgcctcgg ttcccaacgc cgactaccgc gcgcagggcg tgcgcatcgg cgacctcaag
     3901 atcgtcgacc gcccggccga ggacctgctg gtcgtcaacg ccggcgccat cgcgcgcgac
     3961 caggacaagc tgaaggcggc gatgaacgcc gacatggagt ggatcaagcg cagcatcgac
     4021 gccagcggcc tgacggcggc gggcccgatg cgcatcgtgt ccaccgagtt cggcacccag
     4081 aactacacct tcgacgtggt cgtgccggtg cgtcgcggcg gcgatgccac cgccgtcgcc
     4141 gcggacgtcc cgctcaccgg cctcaagctg cagggcccgg tcaagtacgt gcacgccggt
     4201 cccgtgcgtg ccgcctcggc cagctacacc ggctacatga tggagctgga gaacgcgcac
     4261 aacatgctgc gcgcgtgggc gctgaccaac ggctacgagg tcatcgaccg tccgtacgag
     4321 gtgtacagga acggcgtcga gggcgccttc agcgaggatg gccagttcga gatgtactgg
     4381 aacatcaagt aaggaaccgc cttcccgctt gtcgaccacg acacgccgcc tcgcgcggcg
     4441 tgtcgcgttt ccggggcctg caacgacaga tggacgccgc gacacctccg ccgacgaagt
     4501 cgccgctggc cgcctgcggc gcgttgtgcg cgggcgccgc ggtggcgctc gcggcgtacg
     4561 cggcgcacgc ccgcatcggt acgggacagg tgctgctgca gaccgcggcg gcgctgctgt
     4621 tcgggaacgg cgtcgcgctg gcggcgctgg cgcgcgggac ctgttgtctc ctctttctta
     4681 cagctggctg ctagcaatcc gattgctaat gctccagcaa taaaactaaa tgttgctttt
     4741 ttcatagtat gtgagattta aaattgagcc aaaagt
//
LOCUS       DATIQC010000069         4761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_75135, whole genome shotgun sequence.
ACCESSION   DATIQC010000069 DATIQC010000000
VERSION     DATIQC010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4761
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75135"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VLM17_01480"
     CDS             <1..454
                     /locus_tag="VLM17_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010364488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HSR64261.1"
                     /translation="HDLVHAAQAAALAKARPGVAYEAGHQAAVETLTEGLLRLGLLKG
                     TLEQAIRDGHYKRFYRHKTGHWLGLDVHDVGDYRIDGHSRLLEAGMVFTIEPGLYVSP
                     DDKSVAAKWRGIGIRIEDDVVVTADGHRVLTGKLARSADEIEALMSAR"
     gene            complement(488..1819)
                     /gene="pepQ"
                     /locus_tag="VLM17_01485"
     CDS             complement(488..1819)
                     /gene="pepQ"
                     /locus_tag="VLM17_01485"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HSR64262.1"
                     /translation="MHPPDILYADHLDVLQNRATEALARGGFDHLVIPSGTLHYQAFD
                     DRDYPYAVNPQFKAWLPLTRNPGSWIAFTPGARPKVVYLQPFDYWHSVPESPSGYWTQ
                     HFDIVVIRAPEEALAHLPDPARSAILGEPQAAPGDAAGQRYAPNNPPAVLAHLEYHRA
                     FKTPYELAMMREASRIGARAHRAAERAFRAGAGEFGIHLVYCQAAGQDANDLPYGNII
                     ALNEHGAVLHYMDRDRWPPPQRRSLLIDAGASFGGYACDITRTHAADAASEFQALVDA
                     VDAAQQRMCAQVRAGFDYRQLHLDAHLALAGVLRDFGIVRMSPESAVESGVSSAFFPH
                     GIGHGIGLQVHEVAGFAASDRGGTIDKPPGHPYLRLTRVLEPGMVVTIEPGLYFIDML
                     LTKLRQDGLGDAVDWSRVDAFRPYGGIRIEDDVACTDGEPENLTREAFAAG"
     gene            1861..4479
                     /locus_tag="VLM17_01490"
     CDS             1861..4479
                     /locus_tag="VLM17_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR64263.1"
                     /translation="MEVKPELVEPTRLLLGLPAWAWGFGGLLLGLLATTALLALEYRD
                     LAGEARVRHALMARSTIGQVERQLESAGLQLRALQSAYLVASGIDEARFAGIVANLDA
                     QRMVPSLLAVAYAPRTVDAAGRVHYAYTQVAPLESNHGLLGLDIVSQPENLVALARAR
                     DLDAPVLSTPFRLLQPARDPRDSDGLVLRLPVFTPGPRPTSPAERRRREAGALAMSVR
                     VRPLLLDALSPTLRQYHVRVVDVTAAERVLFDEGAQAAGEGRYGGVLEYGGRRWQLSL
                     QPAQRATGPLLWTFGIGGGVASVLFALLLWSIASTRRRAITLGWQMSARFRESEARFR
                     TLNELLPALVLMARADDGTIVYANEAACARLGEGVTSTTLAALFEDETLHARLEAHDA
                     DTAWSNVEAVLVSLNGDRFWAATSISRVRLGEQDRLLVVATDISEQRQLTELLSYQAS
                     HDTLTELYNRREFERQVQRALYGLGKDGPPAALLYLDLDQFKLINDTSGHLAGDQLLS
                     QLALAMAEQLRGGDILARLGGDEFGILAHDTRMEGAQALAERLRARIEGFVYVWQKQS
                     YTVSVSIGVVLLDHPGATLGEALSQADAACYIAKDRGRNRVHFYSEQDDEAVRRRGEM
                     EWANRLRWVVEEGRLLLHYQQVVPLQEQGSGEPYIELLLRLRDEDGQTVFPGAFLPAA
                     ERYGMMPLLDRWVIANALSHFDRLHASGRAPGCCAINLAASTLEDEGLADYVLDLVAR
                     HGVEPRRLCFEITETEAMRNVARAMRFIERVRAVGCKVALDDFGAGMSSFGYLKNLPV
                     DTIKIDGSFVRDIEADTMSRSIVESICKIGHQRGLDVVAEWVADHGVVPLLRELGVDY
                     GQGFALHRPEPALFQR"
     gene            complement(4513..>4761)
                     /locus_tag="VLM17_01495"
     CDS             complement(4513..>4761)
                     /locus_tag="VLM17_01495"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSR64264.1"
                     /translation="SETGMMLIASAPLVEDALYQFRFRLHDGKGREQGFEIGAHLLWL
                     DRASAPGQAWTGFRFIAVPPEQAEQLRHWIDAPGGQYV"
BASE COUNT          679 a         1651 c         1740 g          691 t
ORIGIN      
        1 gcacgacctg gtccatgcgg cccaggcggc ggcgctcgcg aaggcgcggc cgggcgtcgc
       61 gtacgaagcc ggccaccagg ccgcggtgga aacgctgacc gaaggcctgc tgcggctcgg
      121 gctgctcaag ggcacgctcg agcaggccat ccgcgacggg cactacaagc gcttctaccg
      181 gcacaagacc gggcactggc tcggcctgga cgtgcacgac gtgggcgact accgcatcga
      241 cggccactcg cgcctgctcg aggcgggcat ggtgttcacc atcgagccgg gcctgtacgt
      301 gtccccggac gacaagtccg tggcggcgaa atggcgcggc atcggcatcc gcatcgagga
      361 cgacgtggtg gtcaccgccg acggccaccg cgtgctgacc ggcaagctgg cgcgcagcgc
      421 ggacgagatc gaggcgctga tgtcggcgcg ctgagcgcgc gccgccgtac gaacccgggc
      481 agccgcctca gccggccgcg aacgcctcgc gcgtcaggtt ttccggttcg ccatccgtgc
      541 aagcgacgtc gtcctcgatg cggatgccgc cgtaggggcg gaatgcatcc acgcgcgacc
      601 agtcgaccgc atcgccgagg ccgtcctggc gcagcttcgt cagcagcatg tcgatgaagt
      661 agaggccggg ttcgatcgtc acgaccatgc ccggttccag cacgcgggtc aggcgcaggt
      721 agggatggcc gggcggcttg tcgatcgtgc cgccgcggtc gctcgcggcg aagccggcga
      781 cctcgtgcac ctgcaggccg atgccgtggc cgatgccgtg cgggaagaac gcgctgctca
      841 cgcccgattc caccgccgac tccggcgaca tccggacgat gccgaagtcg cgcagcacgc
      901 cggcgagcgc gaggtgcgcg tccaggtgca gctggcggta gtcgaagccg gcgcgcacct
      961 gcgcgcacat gcgttgctgc gcggcgtcga ccgcgtcgac cagcgcctgg aattcgctgg
     1021 cggcgtcggc cgcatgggtg cgggtgatgt cgcaggcgta gccgccgaag ctggccccgg
     1081 catcgatcag caggctgcgg cgctgcggcg gcggccagcg gtcgcggtcc atgtagtgca
     1141 gcaccgcgcc atgttcgttg agcgcgatga tgttgccgta gggcaggtcg ttggcgtcct
     1201 ggccggcggc ctggcagtac accaggtgga tgccgaattc gccggcgccg gcgcggaacg
     1261 cgcgctcggc cgcgcggtgc gcgcgcgcgc cgatgcggct ggcctcgcgc atcatcgcca
     1321 gctcgtacgg cgtcttgaac gcacggtggt attcgaggtg ggcgagcacg gccggcgggt
     1381 tgttgggcgc gtaacgttgt ccagcggcat cgcccggcgc ggcttgcggc tcgccgagga
     1441 tcgcgctgcg cgccggatcc ggcaggtgcg cgagcgcctc ctccggcgcg cggatgacca
     1501 cgatgtcgaa gtgctgcgtc cagtagcccg acggcgattc gggcaccgag tgccagtaat
     1561 cgaagggctg caggtagacg accttgggcc gtgcgcccgg cgtgaacgcg atccagctgc
     1621 cgggattgcg cgtgagcggc agccaggcct tgaactgcgg attgaccgcg tagggatagt
     1681 cgcggtcgtc gaatgcctgg tagtgcaggg tgccactggg gatcaccagg tgatcgaaac
     1741 cgccccgcgc gagcgcctcg gtcgcccggt tttgcaacac atcgaggtgg tcggcatata
     1801 ggatgtcggg cgggtgcatc gctggagcca tgcgtgggag agaactcgca ttctgccgga
     1861 atggaggtca agccggagct ggtcgaaccg accaggctgc tgcttggcct gccggcgtgg
     1921 gcatgggggt tcggcggcct gctgctcggc ctgctggcca ccaccgccct gctggccctc
     1981 gagtatcgcg acctcgccgg cgaagcacgc gtgcgccacg cgctgatggc gcgcagcacc
     2041 atcggacagg tcgagcgcca gctcgagtcg gccggcctgc agttgcgcgc gctgcagtcg
     2101 gcgtatctcg tcgcctccgg catcgacgag gcgcgcttcg ccggcatcgt cgccaacctc
     2161 gacgcgcagc gcatggtgcc gagcctgctc gcggtcgcat acgcgccgcg cacggtggat
     2221 gccgcgggcc gcgtgcacta cgcctacacc caggtggcgc cacttgagtc caaccacggc
     2281 ctgctcggcc tggacatcgt ctcgcagccg gaaaacctcg tcgcgctggc gcgcgcgcgc
     2341 gacctcgatg cgcccgtgct gtcgactccc ttccgcctgc tccagccggc gcgcgatccg
     2401 cgcgacagcg acggcttggt gctgcggctg ccggtgttca ccccggggcc gaggccgacg
     2461 agcccggccg agcgccgccg gcgcgaagcc ggcgcgttgg cgatgagcgt gcgggtgcgg
     2521 ccgttgctgc tcgatgcgct gtcgccgacg ctgcgccagt accacgtgcg cgtggtcgac
     2581 gtcaccgccg cggagcgggt gctgttcgac gaaggcgcgc aggcggccgg cgagggccgc
     2641 tatgggggcg tcctggaata cggcggccgt cgctggcagc tgagcctgca gccggcgcag
     2701 cgcgcgaccg ggccgctgct gtggaccttc ggcatcggcg gcggcgtcgc cagcgtgctg
     2761 ttcgcgctgc tgctgtggtc gatcgccagc acgcgccggc gcgcgatcac gctcggctgg
     2821 cagatgagcg cgcgcttccg cgagagcgag gcacgcttcc gcaccctcaa cgaactcctg
     2881 ccggcgctgg tgctgatggc gcgcgcggac gacggcacca tcgtctatgc caacgaggcc
     2941 gcctgcgcgc ggctgggcga aggcgtcacc agcaccacgc tcgcggcgct gttcgaggac
     3001 gaaacgctgc acgcgcggct cgaggcgcat gatgccgaca ccgcctggag caacgtcgag
     3061 gcggtactgg tctcgctcaa cggcgaccgg ttctgggcgg cgacctcgat ctcgcgcgtg
     3121 cgcctgggcg agcaggacag gctgctggtg gtcgccaccg acatctccga acagcgccag
     3181 ctgaccgaac tgctgagcta ccaggccagc cacgacaccc tgaccgagct gtacaaccgg
     3241 cgcgagttcg agcgccaggt gcagcgcgcg ctctacggcc tcggcaagga cgggccgccg
     3301 gcggcgctgc tgtacctcga cctcgaccag ttcaagctga tcaacgacac ctccggccac
     3361 ctcgccggcg accagctgct cagccagctc gcgctggcga tggccgagca gttgcgcggc
     3421 ggcgacatcc tcgcgcggct gggcggcgac gaattcggca tcctcgccca cgacacccgc
     3481 atggaaggcg cgcaggcgct ggccgagcgc ctgcgtgcgc gcatcgaggg cttcgtctac
     3541 gtctggcaga agcagtccta cacggtcagc gtgagcatcg gcgtggtgct gctcgaccat
     3601 ccgggcgcca ccctcggcga ggcgctgtcg caggccgatg ccgcctgcta catcgccaag
     3661 gatcgcggcc gcaaccgcgt gcatttctat tccgagcagg acgacgaggc cgtgcgccgg
     3721 cgcggcgaga tggagtgggc gaaccgcctg cgctgggtgg tggaagaggg ccggttgctg
     3781 ctgcactacc agcaggtggt gccgctgcag gaacagggca gcggcgaacc ctacatcgaa
     3841 ctgctgctgc gcctgcgcga cgaggacggg cagaccgtgt tcccgggcgc gttcctgccg
     3901 gccgccgagc gctacgggat gatgccgctg ctcgatcgct gggtgatcgc caacgcgctg
     3961 tcgcacttcg accgcctgca tgcgagtggc cgcgcccccg gctgctgcgc gatcaacctc
     4021 gccgcgtcca ccctggagga cgaaggcctc gccgactacg tgctcgacct cgtcgcccgg
     4081 catggggtcg agccgcgccg gttgtgcttc gagatcaccg agaccgaggc gatgcgcaac
     4141 gtcgcgcgcg cgatgcggtt catcgagcgg gtgcgcgcgg tcggctgcaa ggtcgcgctc
     4201 gacgacttcg gcgcgggcat gtcctcgttc ggctacctca agaacctgcc ggtggacacc
     4261 atcaagatcg acggcagctt cgtgcgcgac atcgaggcgg acaccatgag ccgctcgatc
     4321 gtcgagtcga tctgcaagat cggccaccag cgcgggctcg acgtggtcgc cgaatgggtc
     4381 gcggaccacg gcgtggtgcc gctgctgcgc gagctcggcg tcgactacgg ccagggcttc
     4441 gccctgcacc ggccggagcc ggcgctgttc cagcgctagg aaggtccggc cggcggtccg
     4501 gccgcggcgc ggtcagacgt actggccgcc gggcgcgtcg atccaatggc gcagctgctc
     4561 ggcctgctcg ggcggcaccg cgatgaagcg gaacccggtc cacgcctggc cgggcgcgct
     4621 cgcacggtcc agccagagca ggtgcgcccc gatctcgaag ccctgttcgc ggcccttgcc
     4681 gtcgtgcagg cggaagcgga actggtacag cgcgtcctcg accagcggtg cgctggcgat
     4741 cagcatcatg ccggtctccg a
//
LOCUS       DATIQC010000070         3053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_675729, whole genome shotgun sequence.
ACCESSION   DATIQC010000070 DATIQC010000000
VERSION     DATIQC010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675729"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VLM17_01500"
     CDS             <1..272
                     /locus_tag="VLM17_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011050285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HSR64265.1"
                     /translation="PLARALRLPLRDDLLVRIRATAAQSERDATARRRNVRGAFGVRA
                     GATVPAHVVLVDDVMTTGATLHAAARALRRAGVARVDAWICARVP"
     gene            complement(371..1819)
                     /locus_tag="VLM17_01505"
     CDS             complement(371..1819)
                     /locus_tag="VLM17_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00366 family protein"
                     /protein_id="HSR64266.1"
                     /translation="MTRRDDGWLARIALRCAAFAERWFPDAWVFAALGVVLVAFAALA
                     SGATPHDTARAFGQGYWSLVPFTLQMVFVVIGGYVVASAPVVARGIGRLARLPRSGRG
                     AVAFVAALSMLSSLLSWGFSLVFGGLLVRALARRADLRMDYRAAGAAAYLGLGAVWAL
                     GLSSSAAQLQANPASMPKELLAITGVLPFAQTIFLWQSLLLTLVLVAVSVLVAWRSAP
                     DDAAAVTAQALGVRADGAVGPGQGATGEPRTDGSVGARPGDWLERSPLLTVLLSLLAF
                     GWLAGEFASRSAATAIADLNTYNLLFLSLGLLLHWRPRSFLDAVAKAVPGTAGVLIQF
                     PLYGGIAAMLTGAAGADGATLAQRLAQLFVQVAARDTFVPVMGAYSAVLGFFVPSGGG
                     KWLVEAPYVMQAANALQVHLGWAVQTYNAAEALPNLVNPFWMLPLLGILGLKARDLVG
                     YTFVQLLVHVPLVLGLLWLLGLTLSYLPPAMP"
     gene            complement(1901..2812)
                     /gene="ubiA"
                     /locus_tag="VLM17_01510"
     CDS             complement(1901..2812)
                     /gene="ubiA"
                     /locus_tag="VLM17_01510"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008412 - 4-hydroxybenzoate
                     octaprenyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HSR64267.1"
                     /translation="MSYERDYPPVPAPLPAWRDRLAQYWALVRGDRPIGWLLLLWPTW
                     WGLWLAAGGRPPWWPLVVFSLGVWLTRSAGCVVNDYADRWLDPQVERTKGRPLATGAV
                     SGREALAVFAGLMLVAFALVLTLDRLTVMLSVVGVLLAASYPYLKRYTYLPQVYLGMA
                     FGWGIPMAFAALQGRVPPVAWLLYAANILWATAYDTWYAMVDRDDDIRMGAKSTAILF
                     GELDLVAQGVLYALFFAALALVGRQAQLGRWYWLGLGVALLLVAYEFVIARQRGRAAC
                     FRAFLHNHWVGAAVFAGLALDLWKHGG"
     gene            2916..2992
                     /locus_tag="VLM17_01515"
     tRNA            2916..2992
                     /locus_tag="VLM17_01515"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2950..2952,aa:Arg,seq:ccg)
BASE COUNT          491 a         1184 c         1059 g          319 t
ORIGIN      
        1 agccgctcgc gcgcgccctg cgcctcccgc tccgcgacga cctgctggtg cgcatccgcg
       61 cgaccgccgc gcagagcgaa cgcgacgcga ccgcgcgccg gcgcaacgtg cgcggcgcgt
      121 tcggcgtgcg cgccggcgcg acggtgcccg cgcacgtcgt gctggtcgac gacgtgatga
      181 cgaccggcgc gaccctgcac gcggccgcgc gcgcgctgcg cagggccggg gtcgcgcggg
      241 tggacgcgtg gatctgcgcg cgggtgccgt gagggccccg gggcagcagg catgcgtggc
      301 tcacccgggt tgttcgtcat ccggcgaggg cgcgatcccg cgcctgctcc ggccggcgct
      361 ccgggccgcc ctacggcatc gccggcggca ggtacgacag ggtcaggccg agcagccaca
      421 gcaggcccag caccagcggc acgtgcacca gcagctgcac gaaggtgtag cccacgaggt
      481 cgcgtgcctt caggccgagg atgcccagca gcggcagcat ccagaacggg ttgacgaggt
      541 tggggagcgc ctcggccgcg ttgtaggtct gcaccgccca gcccaggtgc acctgcagcg
      601 cattcgccgc ctgcatcacg tacggcgcct cgaccagcca cttgccgccg cccgacggga
      661 cgaagaagcc gagcaccgcc gagtacgccc ccatcaccgg cacgaacgtg tcgcgcgcgg
      721 cgacctgcac gaacaactgc gccaggcgct gcgcgagcgt ggccccgtcc gcacccgccg
      781 cgccggtcag catcgccgcg atcccgccgt agagcgggaa ctggatcagc acgccggccg
      841 tcccgggcac cgccttcgcc accgcgtcga ggaaactgcg cggacgccag tgcagcagca
      901 ggccgagcga gaggaacaac aggttgtagg tgttgaggtc ggcgatcgcg gtggccgcgg
      961 acctcgacgc gaactcgccc gccagccagc cgaacgcgag cagcgaaagc agcaccgtca
     1021 gcagcggact gcgctccagc cagtcgcccg ggcgcgcgcc gacggagccg tcggtccggg
     1081 gctctccggt cgcgccttgc cccggaccga cggctccgtc ggcgcgcacc cccagcgcct
     1141 gcgcggtcac ggccgccgcg tcgtccgggg cgctgcgcca tgccaccagc accgacaccg
     1201 ccaccagcac gagggtcagc agcagcgact gccagaggaa gatcgtctgc gcgaagggca
     1261 gcacgccggt gatcgcgagc agctccttcg gcatgctcgc cggattggcc tgcagctgcg
     1321 cggccgacga gctcaggccc agcgcccaca ccgcaccgag gccgaggtag gcggcggcgc
     1381 cggcggcgcg gtaatccatg cgcaggtcgg cccggcgcgc gagcgcgcgc accagcaggc
     1441 cgccgaacac cagcgaaaaa ccccagctca gcagcgagga cagcatgctc agcgcggcga
     1501 cgaaggcgac cgcgccccgc ccgctgcgcg gcagccgtgc caggcgtccg atgccgcgcg
     1561 ccaccaccgg tgcgctggcg acgacgtaac cgccgatcac cacgaacacc atctgcaggg
     1621 tgaaaggcac caggctccag tagccctggc cgaaggcccg cgcggtgtcg tgcggcgtcg
     1681 cgccggaggc gagcgcggcg aacgccacca gcaccacccc cagcgcggcg aagacccagg
     1741 catcggggaa ccagcgctcg gcgaacgcgg cgcagcgcag cgcgatgcgt gccagccagc
     1801 cgtcatccct tcgcgtcatg tcgtccccgc gcgcatcgtc attcccggtc cgtcgtcgtc
     1861 ccgcaccccg cgccgacgtg aaggcgcgcc gcggcccgcc tcacccgccg tgcttccaca
     1921 agtcgagcgc caggccggcg aacaccgccg cgcctaccca gtggttgtgc aggaaggcgc
     1981 ggaagcaggc cgcgcgcccg cgctggcgcg cgatcacgaa ttcgtacgcc accagcagca
     2041 acgccacgcc gaggccgagc cagtaccacc gcccgagctg cgcctgcctg ccgaccagcg
     2101 ccaacgcggc gaagaacagc gcgtagagca cgccctgcgc gacgaggtcg agctcgccga
     2161 agaggatcgc cgtcgacttc gcgcccatgc ggatgtcgtc gtcgcggtcg accatcgcgt
     2221 accaggtgtc gtatgcggtc gcccacagga tgttggccgc gtacagcaac cacgcgaccg
     2281 gcggcacgcg gccctgcagc gccgcgaacg ccatcgggat gccccagccg aacgccatgc
     2341 ccaggtacac ctgcggcagg taggtgtacc gcttgaggta gggatagctc gccgccagca
     2401 gcaccccgac cacgctgagc atgacggtga gccggtcgag cgtgagcacc agcgcgaacg
     2461 cgaccagcat cagccccgcg aacacggcga gcgcctcgcg cccggacacc gcgccggtcg
     2521 ccagtggccg ccccttcgtg cgttcgacct gcgggtccag ccagcggtcg gcgtagtcgt
     2581 tgaccacgca gccggccgag cgggtcagcc acacgccgag gctgaacacc accagcggcc
     2641 accacggcgg gcgcccgccg gcggcgagcc acagccccca ccacgtcggc cacagcagca
     2701 gcagccagcc gatcgggcga tcgccgcgca ccagcgccca gtactgcgcc aggcggtcgc
     2761 gccaggccgg caacggggcg ggaacgggcg ggtagtcgcg ctcgtagctc atgcacgaca
     2821 gcctagcagc gccgcgcgga ccgttcgccg cgcgctcgcg cggtcccggg caatctgcga
     2881 gaatcccgct ccccgcggca cgtccgcggc ggcacgcgcc cgtagctcag ccggatagag
     2941 tagtggcttc cgaagccatt ggtcgggggt tcgaatccct ccgggcgcgc caattcagcg
     3001 atcgtcttgc cgccaaaatc ggccgtgacc gcgcctgccc gaatctgcga tca
//
LOCUS       DATIQC010000071         9945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_534567, whole genome shotgun sequence.
ACCESSION   DATIQC010000071 DATIQC010000000
VERSION     DATIQC010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9945
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534567"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1158
                     /locus_tag="VLM17_01520"
     CDS             <1..1158
                     /locus_tag="VLM17_01520"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR64268.1"
                     /translation="RYQRVVAVAQAQSSTYDIATAHLGMALPYILQQQYAQALDTLAR
                     AQLEFAAAGDRSNQGMLDLRRGQAHAGLGEHERALADYARAAVSLEHGGNLRYQAMLY
                     QARAASDEALGHAAAAVADLHRYIAAHEALEQRDHSQQAEVLRYQFDAERSELENRRL
                     SVEKAARDRQLAALLKARRWQWTAIALGGLLLAVLGALVMRQFDRVRRLRELASTDPL
                     TGVANRRSIELHGEAALAQARAQAQPLSVMILDIDHFKRINDAHGHLVGDQVLARVAR
                     TCQDAMRQHDQLGRIGGEEFLVLLPDTRLAHALQIADRLREVLGRLGCDDLAPGATVS
                     VSIGVAEWQAQDADLKALLRRADVALYRAKHGGRDRVEMALAVEPPLPVEA"
     gene            complement(1162..1500)
                     /locus_tag="VLM17_01525"
     CDS             complement(1162..1500)
                     /locus_tag="VLM17_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HSR64269.1"
                     /translation="MKMVMAIIKPFKLDDVREALSDVGVAGITATEVKGFGRQKGHTE
                     LYRGAEYVVDFLPKIKLEVAVTDEQVDAVVEAIMQAAGTGKIGDGKIFVWGLDKVVRI
                     RTGELDADAL"
     gene            1735..2013
                     /locus_tag="VLM17_01530"
     CDS             1735..2013
                     /locus_tag="VLM17_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HSR64270.1"
                     /translation="MIDLSHIDELARRLSNLVPPAMRGSGFDDLRDELQENFKSVLQA
                     GLAKLDLVTREEFEVQRAVLLRTREKLDALQQTVADLEAQQTASAPPR"
     gene            2024..3535
                     /locus_tag="VLM17_01535"
     CDS             2024..3535
                     /locus_tag="VLM17_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HSR64271.1"
                     /translation="MSLAVVHTRARAGVRAPAVRVEVHLAGGLPSMSIVGLPEAAVRE
                     AKDRVRAAIQCAQFEFPARRITVNLAPADLPKGGGRFDLPIALGILAASGQIPLEALR
                     DVEFLGELGLTGELRAVDGVLPAALAAAQDERRLVVPTGNGAEAALAREVHATTARTL
                     LEVCAALEGRRTLPVAEAPPSSADSGPDLADVRGQLHARRALEIAAAGSHHLLLLGPP
                     GCGKTLLASRLPGLLPPASEAEALETAAIASVSGRGLDPARWHARPWRAPHHTASAVA
                     LVGGGAEPRPGEISLAHNGVLFLDELPEWSRQALEVLREPLESGVVTISRAARQSEFP
                     ARFQLVAAMNPCPCGWAGDPSGRCRCSPDAIQRYRARISGPLLDRIDLHVDVPRLPPA
                     DLRPDAPAGEDSATVRARVVAARATQHARSGCANAQLGQAGTLAHCRLSAADQALLER
                     AIDSLQLSARSLHRILRVARTIADLAGSGTIATAHLTEALGYRRMDRRVPLAA"
     gene            3672..5393
                     /locus_tag="VLM17_01540"
     CDS             3672..5393
                     /locus_tag="VLM17_01540"
                     /inference="COORDINATES: protein motif:HMM:NF003715.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HSR64272.1"
                     /translation="MTLLGGALLILAGIASSLLARRFGAPLLLVFLALGLLLGEDGPG
                     GIRYDDTRFTFLVGSLALAVILFDGGLRTRASHVRGAVVPSLVLASIGVALTAGLTAL
                     AASKLLDLPPLEALLLGTIVSSTDAAAVFFLLRTGGLHLERRSGATLELESGSNDPTA
                     IFLAIGLTTWLAGHRDGGVAALALQLVWVVALGLGLGYAGGRAIVAALNRLNLPAGLH
                     PWLALAGAVALFALTNRLGGSGYLAVYLAGIVVANRPMRARADVLAVQDAATWFAQLV
                     MFLLLGLLASPSALLKVLWPAFGVAAFLMLVARPVAVFACLWPFGYRLQELGFISWVG
                     LRGAVGIFLASIPLLAHLPHARLYFDVAFVVVLVSLLVQGWTLRPAAHAFGVAVPRAD
                     PGTRRIQLDLPGQLEYELIGYRVAPGSAVLRGAALPGRVRLAMLVREGRILLPDVDAA
                     RVLAANDYAYYLAPGGQAARLDWLFAEGPDAREAEQDTFGVFTLPGNVPLGELAAFYG
                     LAIPARFAARTAEQLFDERFDEQAQVGDRLALGRKAILVVRALKDERVAQVGLKFAGV
                     GERLLGG"
     gene            complement(5412..6086)
                     /locus_tag="VLM17_01545"
     CDS             complement(5412..6086)
                     /locus_tag="VLM17_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64273.1"
                     /translation="MTRIHLVTASVLLACAASAGAQNSTAKKLYCWTENGRKVCGDAL
                     PASAAGNARVEFSARSGRQTGEVGRALTPEEQAAAATAAEQAQAAADAEAARQRRDLA
                     MVESYASEADLRRAYGERIALLDDSLKASRLGEANLRRSLSSLLQEAGDLELSSKPVP
                     PALLANIRTQHVELQKQLRILGQQRLDRAGLDDDLKEAVVRYRALRQPGGAVAPATTA
                     TSAPGG"
     gene            complement(6134..6811)
                     /gene="pyrE"
                     /locus_tag="VLM17_01550"
     CDS             complement(6134..6811)
                     /gene="pyrE"
                     /locus_tag="VLM17_01550"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009588481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HSR64274.1"
                     /translation="MDDYRRRFLTLALQADALRFGDFTLKSGRQSPYFFNAGRFDSGA
                     ALAGLAECYADALDAQGAQSALPAFDMLFGPAYKGIPLATALACAYARRGRDLPLAFN
                     RKEAKAHGEGGLLIGAPLDGRRVLIVDDVITAGTAIREALDLIAAAGGTAAAIVIALD
                     RQEVVDADAPVRQSAAQAVAAEHGIPVIAVARLADLLAFAGESAELVAERERLLAYRA
                     RYGCDPA"
     gene            complement(6784..7374)
                     /locus_tag="VLM17_01555"
     CDS             complement(6784..7374)
                     /locus_tag="VLM17_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007082568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64275.1"
                     /translation="MASAPPHDPIGTGVEQRGVERSGVRVRPVTPALLAAVAALRVTA
                     AQQAQVGEVAVHLAQAAQDPCSEPMAILAGDTVVGFYRLDFAARAIAGRHFGSASVTL
                     RPFLIDARWQGRGLGRRALQALLDDLRARHPRRRLLLLTVAVGNRAALALYRRAGFVD
                     SGVLLAGGRGGPQHLLLRALGGMGECAPWTTTAAAS"
     gene            7411..8199
                     /locus_tag="VLM17_01560"
     CDS             7411..8199
                     /locus_tag="VLM17_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005930855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HSR64276.1"
                     /translation="MRIVSFNANGLRSAASKGFFDWFAGHDADVLCVQETKAQEHQLG
                     DATFLPAGYRVWFRDASTKKGYSGVAIYARREPDEVRTAIGWEAFDEEGRYLEARFGN
                     LSVVSMYVPSGSSGELRQGFKFEVMQWLRPILEQWRTSGRDYVLCGDCNIVRSELDIR
                     NWKSNQKNSGCLPAERAWLNGLCHGPTSDGSMGWVDTYRALHPQGQDYTWWSNRGAAR
                     AKNVGWRIDYQLATPSLRDKLLACEITPAPRFSDHAPFTVDYAL"
     gene            8274..9500
                     /locus_tag="VLM17_01565"
     CDS             8274..9500
                     /locus_tag="VLM17_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR64277.1"
                     /translation="MFFFGFASGLPFLLVAGTLAYWLKDNGIELKDITLIASAGMTYA
                     LKFLWAPLLDHARPPLLGRLGQRRGWLLLAQLGVTLGLLAMSVATPAQLGAFVGCTLL
                     VAFAGATQDIAVDAYRIEIAPPSAQGALVATYSLGYRIALIVTGAFALFMADHMAWLQ
                     VYRAMALLMLVPIVATLLAREPEVLRTVPADWHAAMREAVVDPFADFFRRYGWRTAAL
                     TLLFILLFKIPEQALVGGIMSPFYLDMGFSKTEIGAITKLYGIWMGILGVFLAGLAIA
                     RWGVRKPLLASIVVCASCNLLYVWLIAHKGELAALTLVISAENMSLGFLGTAAVAFLS
                     SLVNRQHTATQYALLSSMVNLPGKVLGIFAGAIVEATSYASYFVLATLAVLPATALLL
                     YLWPRFREADAGAGPG"
     gene            9593..9901
                     /locus_tag="VLM17_01570"
     CDS             9593..9901
                     /locus_tag="VLM17_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64278.1"
                     /translation="MTDIILRDIDATLADRIRRIGEAHGWSASDTLLHVLEYGLHACE
                     GDGRARLDPRERDVLGAAIQALEGVPDDPGFALIGRAGPVDPAPQQPDQRIRPEFSLE
                     "
BASE COUNT         1242 a         3713 c         3576 g         1414 t
ORIGIN      
        1 cgctaccagc gcgtggtggc cgtcgcgcag gcgcagtcga gcacctacga catcgccacc
       61 gcgcacctgg gcatggcgct gccgtacatc ctgcagcagc aatacgcgca ggccctggac
      121 acgctggcgc gcgcgcagct cgagttcgcc gccgccggcg accgctccaa ccagggcatg
      181 ctcgacctgc gccgcggcca ggcccatgcc ggcctcggcg agcacgaacg cgcgctcgcg
      241 gactacgcgc gcgccgcggt cagcctcgag cacggcggca acctgcgcta ccaggccatg
      301 ctgtaccagg cgcgcgcggc cagcgacgag gcgctcggcc atgccgccgc cgcggtcgcc
      361 gacctgcacc ggtacatcgc cgcgcacgag gcgctcgagc agcgcgacca cagccagcag
      421 gccgaggtgc tgcgttacca gttcgatgcc gagcgcagcg aactggaaaa ccgccgcctg
      481 agcgtcgaga aggccgcgcg cgaccgccag ctggccgcgc tgctgaaggc gcgacgctgg
      541 caatggaccg cgatcgcgct gggcggcctg ctgctcgccg tgctcggcgc gctggtgatg
      601 cgccagttcg accgcgtgcg ccgcctgcgc gaactcgcct cgaccgatcc gctcaccggc
      661 gtcgccaacc gccggagcat cgagctgcat ggcgaggccg ccctggcgca ggcgcgcgcg
      721 caggcgcagc cgctcagcgt gatgatcctc gacatcgacc acttcaagcg catcaacgac
      781 gcccacggcc acttggtcgg cgaccaggtg ctggcgcggg tcgcgcgcac ctgccaggac
      841 gcgatgcgcc agcacgacca gctcggccgc atcggcggcg aggagttcct ggtgctgctg
      901 ccggacacgc gcctggcgca tgcgctgcag atcgccgacc gcctgcgcga ggtgctcggc
      961 cggctcggat gcgacgacct cgcgccgggc gcgacggtca gcgtctcgat cggcgtggcc
     1021 gaatggcagg cgcaggacgc cgacctcaag gccctgctga ggcgcgccga cgtcgcgctc
     1081 tatcgcgcca agcacggcgg ccgcgaccgc gtcgaaatgg cgctggcggt cgagccgccg
     1141 ctgccggtcg aggcctgagc gctacagcgc gtcggcgtcc agctcgccgg tgcggatgcg
     1201 caccaccttg tcgagtcccc acacgaagat cttgccgtcg ccgatcttgc cggtgcccgc
     1261 ggcctgcatg atcgcctcca ccaccgcgtc gacctgctcg tcggtgaccg cgacctcgag
     1321 cttgatcttg ggcaggaagt cgaccacgta ttccgcgccg cggtagagct cggtatggcc
     1381 cttctggcgg ccgaagccct tgacctcggt ggcggtgatg ccggccacgc cgacgtcgga
     1441 cagcgcctcg cggacgtcgt ccagcttgaa cggcttgatg atggccatga ccatcttcat
     1501 ttcacgcggt ctccatgtcg ccccccagca gcataccgtg gccggtggcg caagccgccg
     1561 gcggccctgt cgccgcacca cgggcgcgtg ctccaatacg cgccccgcgc cgccttcgga
     1621 ctaatccgac gacccggcgc ggcgcccgcc gactgcgcgg gtgcggcgcc ctggccaagc
     1681 tgtgggcaag caaacagcgc gcgaccaggg agccgccacg tgaatgccat cgccatgatc
     1741 gacctcagcc acatcgacga actcgcccgc cgcctttcca acctcgtgcc gcccgcgatg
     1801 cgcggcagcg gcttcgacga cctgcgcgac gagctgcagg agaacttcaa gtcggtgctg
     1861 caggcggggc tggccaagct cgacctggtc acccgcgagg agttcgaggt gcagcgcgcg
     1921 gtgctgctgc gcacgcgcga gaagctcgac gcgctgcagc agaccgtcgc cgacctcgaa
     1981 gcgcagcaga ccgccagcgc gccaccgcgc tgagcccgcc gccatgtcgc tcgcagtcgt
     2041 gcacacccgt gcacgcgccg gcgtgcgcgc gcccgccgtc cgggtcgagg tccacctcgc
     2101 cggcggcctg ccgtcgatgt cgatcgtcgg cctgccggaa gccgcggtgc gcgaggccaa
     2161 ggaccgcgtg cgcgcggcga tccagtgcgc gcagttcgag ttccccgcgc gccgcatcac
     2221 cgtcaacctc gccccggccg acctgcccaa gggcggcgga cgcttcgacc tgccgatcgc
     2281 gctcggcatc ctcgccgcca gcgggcagat cccgctggag gccctgcgcg acgtcgagtt
     2341 cctcggcgag ctcggcctga ccggcgagtt gcgggcggtc gacggcgtgc tgcccgcggc
     2401 gctcgccgcc gcgcaggacg aacgccgcct ggtcgtgccg accggcaacg gggccgaggc
     2461 cgcgctggcc cgtgaagtgc acgcgaccac cgcgcgcacc ctgctggaag tctgcgccgc
     2521 gctcgagggg cggcgcacgc tgcccgtggc cgaggccccg ccctcctcgg cggacagcgg
     2581 cccggacctc gccgacgtgc gcggccagct gcatgcgcgg cgcgcgctcg agatcgccgc
     2641 ggccggatcc caccacctcc tgctgctcgg gccgcccggt tgcggcaaga ccctgctcgc
     2701 ctcgcgcctg cccgggctgc tgccaccggc gagcgaggcg gaagcgctgg aaacggcggc
     2761 gatcgcctcg gtcagcgggc gcgggctgga ccccgcccgc tggcatgcac ggccctggcg
     2821 cgcgccccac cacaccgcca gcgcggtggc gttggtcggc ggcggcgccg agccgcggcc
     2881 tggcgagatc tcgctcgccc acaacggcgt gctgttcctc gacgagttgc cggagtggtc
     2941 gcggcaggcg ctggaagtgt tgcgcgagcc gctcgagtcc ggggtcgtga ccatttcgcg
     3001 cgcggcgcgg caaagcgagt tcccggcgcg cttccagctg gtcgcggcga tgaatccctg
     3061 cccgtgcggc tgggccggcg atccctcggg tcgctgccgc tgcagcccgg acgccatcca
     3121 acgctaccgc gcgcgcatct ccgggccgtt gctggaccgc atcgacttgc acgtcgacgt
     3181 accgcgcctg ccgccggcgg acctgcgccc cgacgcgcca gccggggagg acagcgcgac
     3241 ggtgcgcgcg cgcgtggtgg ctgcgcgcgc cacgcagcac gcgcgcagcg gttgcgccaa
     3301 cgcccagctg ggccaggccg gcaccctggc gcactgccgc ctctctgcgg ccgaccaggc
     3361 gctgctcgaa cgcgcgatcg acagcctgca gctgtcggcg cggtcgctcc accgcatcct
     3421 gcgcgtcgcc cgcaccatcg ccgacctggc cggcagcggg acgatcgcca ccgcgcacct
     3481 gaccgaggcg ctcggctacc ggcggatgga ccggcgcgtg cccctggcgg cgtgacgcct
     3541 ccttgcgaag ccggcggcgc gggcagcgcc gcaaaccggc cccggtccgg cgccacgccg
     3601 gcgcaacacc cgcttgctag catccgggca tccccccgga ggcccgcctg gacagcctgc
     3661 acgccatcga cctgaccctg ctcggcgggg cgctgctgat cctcgccggc atcgcgtcgt
     3721 ccctgctcgc gcgccgcttc ggtgcaccgc tgctgctggt cttcctcgcg ctcggcctgc
     3781 tgctcggcga ggacgggccg ggcggcatcc ggtacgacga cacccgcttc accttcctgg
     3841 tcggttcgct ggcgctggcc gtgatcctgt tcgacggcgg attgcgcacg cgcgcctcgc
     3901 acgtgcgcgg ggcggtcgtg ccttcgctgg tgctggcgag catcggcgtc gcgctcaccg
     3961 ccgggctgac cgcgctggcc gcgtccaagc tgctcgacct gccgcccctg gaggcgctgt
     4021 tgctcggcac catcgtgtcc tcgaccgatg cggccgcggt gttcttcctg ctccgcaccg
     4081 gcggcctgca cctggagcgg cgcagcggcg ccacgctcga actggaatcc ggcagcaacg
     4141 acccgaccgc gatcttcctc gccatcggcc tgaccacctg gctggccggc catcgcgacg
     4201 gcggcgtcgc cgcgctcgcg ctccagctgg tgtgggtggt cgcgctcggg ctcggcctgg
     4261 gctatgccgg cgggcgcgcg atcgtcgccg cgctcaaccg gctcaacctg ccggcggggc
     4321 tgcatccgtg gctggcgctg gcgggcgcgg tggcgctgtt cgcgctgacc aaccggctcg
     4381 gcggcagcgg ctacctcgcg gtctacctcg ccggcatcgt ggtcgccaac cggccgatgc
     4441 gcgcgcgcgc cgacgtgctg gcggtgcagg atgcggcgac ctggttcgcg cagctggtga
     4501 tgttcctgct gctcggcctg ctcgcctcgc cgagcgcgct gctgaaggtg ctgtggccgg
     4561 cgttcggcgt cgccgccttc ctgatgctgg tggcacgacc ggtggcggtg ttcgcctgcc
     4621 tgtggccgtt cggctaccgg ctgcaggagc tcggcttcat cagctgggtg ggcctgcgtg
     4681 gcgcggtcgg catcttcctc gcctcgatcc cgctgctcgc gcacctgccg cacgcgcgcc
     4741 tgtacttcga cgtcgccttc gtggtcgtgc tggtgtcgct gctggtgcag gggtggacgc
     4801 tgcgccccgc ggcccatgcc ttcggcgtgg cggtgccgcg cgccgacccc ggcacccgcc
     4861 ggatccagct cgacctgccc gggcagctcg aatacgagct gatcggctac cgcgtcgcgc
     4921 ccggcagcgc ggtgctgcgc ggcgcggcgc tgccgggccg ggtccgcctg gcgatgctgg
     4981 tgcgcgaggg ccgcatcctg ttgcccgatg tcgacgcggc gcgcgtgctc gccgccaacg
     5041 attacgccta ctacctggct cccggcggcc aggcggcgcg gctggactgg ctgttcgccg
     5101 aaggcccgga tgcgcgcgag gccgagcagg acaccttcgg cgtgttcacc ctgcccggca
     5161 acgtgccgct gggggaactg gcggcgttct acggcctggc gatcccggca cgcttcgccg
     5221 cgcgcaccgc cgagcagctg ttcgacgaac ggttcgacga acaggcccag gtcggcgatc
     5281 gcctcgcgct cgggcgcaag gcgatcctgg tcgtgcgcgc cctgaaggac gagcgcgtcg
     5341 cgcaggtcgg gctgaagttc gccggagtgg gcgagcgctt gctgggcggc tgaccgggcg
     5401 gcccgcgtgg ctcagccgcc gggtgcggac gtcgccgtcg tcgccggcgc gaccgcgcca
     5461 ccgggctggc gcaaggcgcg ataacggacc accgcttcct tgaggtcgtc gtcgaggccg
     5521 gcgcggtcca gccgctgctg gccgaggatg cgcagctgct tctgcagctc gacgtgctgg
     5581 gtgcggatgt tggccagcag ggccggcggc accggcttgc tcgacagctc gaggtcgcct
     5641 gcttcctgca gcaggctgct caggctgcgg cgcaggttgg cctcgccgag tcgcgaggcc
     5701 ttgagcgaat cgtccagcag cgcgatgcgc tcgccatagg cgcggcgcag gtcggcctcg
     5761 ctggcgtagg actcgaccat cgccaggtcg cggcgctggc gcgcggcttc ggcatccgcg
     5821 gcggcctgcg cctgttcggc ggcggtggcc gcggccgcct gttcctccgg ggtcaacgcg
     5881 cggccgactt cgccggtctg ccggccgctg cgggcgctga actcgacccg cgcgttgccg
     5941 gcggcgctgg ccggcagtgc gtcgccgcag accttgcggc cgttctcggt ccagcagtac
     6001 agcttcttgg cggtgctgtt ctgggcgccg gccgaggcgg cgcaggccag cagcacgctg
     6061 gcggtgacga gatggatgcg ggtcatggcg gcagcccctt tctgcacgaa gaccgttgta
     6121 gcgcgcgcga ggctcaggcc gggtcgcagc cgtagcgggc gcggtaggcg agcaggcgct
     6181 cgcgctcggc gacaagttcc gcgctttcgc cggcgaacgc aagcaggtcg gccagccgcg
     6241 ccaccgcgat caccgggatg ccgtgctcgg cggcgaccgc ctgcgcggcc gactgccgca
     6301 ccggcgcatc ggcgtcgacc acttcctggc ggtcgagcgc gatcacgatc gcggccgccg
     6361 tgccgcccgc cgcggcgatc aggtcgagcg cttcgcggat cgcggtgccg gcggtgatca
     6421 cgtcgtcgac gatcagcacg cgccggccgt cgagcggcgc gccgatcagc aggccgcctt
     6481 cgccgtgcgc cttggcttcc ttgcggttga aggcgagcgg caggtcgcgg ccgcggcgcg
     6541 catacgcgca cgccagcgcg gtggccagcg ggatgccctt gtaggccggg ccgaacagca
     6601 tgtcgaacgc aggcagggcg gactgcgcac cctgcgcgtc gagcgcgtcg gcgtagcact
     6661 cggccaggcc ggcgagcgcg gcgccggaat cgaagcgccc ggcgttgaag aagtacggac
     6721 tctggcggcc cgacttcaag gtgaagtcgc cgaagcgcag tgcatcggcc tgcagggcga
     6781 gggtcaggaa gcggcggcgg tagtcgtcca tggcgcgcat tctcccatgc cgccgagcgc
     6841 gcgcaggagc aggtgctgcg ggccgccgcg gccgcccgcc agcagcacgc cgctgtcgac
     6901 gaagccggcg cggcgataca gcgcgagcgc ggcgcggttg ccgacggcga ccgtgagcag
     6961 cagcagccga cgccgcggat ggcgcgcgcg gaggtcgtcg agcagcgcct gcagcgcgcg
     7021 tcgccccagg ccgcgcccct gccagcgcgc gtcgatcagg aacggccgca gggtgacgct
     7081 ggcgctgccg aagtggcggc ccgcgatcgc gcgcgcggcg aaatccagcc ggtagaagcc
     7141 gaccaccgtg tcgccggcga ggatcgccat cggctcgctg cagggatcct gcgccgcctg
     7201 cgccaggtgc accgcgacct cgccgacctg cgcctgctgc gcggcggtca cccgcaacgc
     7261 ggccaccgcg gccagcagcg ccggcgtcac cggccgcacg cgcacgccgc ttcgttcgac
     7321 gccgcgctgt tcgacgcccg tgccgatcgg gtcgtgtggc ggtgcggaag ccattgctat
     7381 gatcccgaac aggtcttcgc cggagcgcgc atgcgcatcg tcagcttcaa cgcaaacggg
     7441 ttgcgctccg cggccagcaa ggggttcttc gactggttcg ccgggcatga cgccgacgtg
     7501 ctgtgcgtgc aggagaccaa ggcgcaggag caccagctcg gcgatgcgac cttcctgccg
     7561 gccggctacc gcgtctggtt ccgtgacgcg agcacgaaga aaggctacag cggggtcgcc
     7621 atctacgcgc ggcgcgaacc ggacgaggtg cgcaccgcga tcggctggga ggccttcgac
     7681 gaggagggcc gctacctcga ggcgcgcttc ggcaacctga gcgtggtgtc gatgtacgtc
     7741 ccctccggtt cgtccggcga gctgcggcag ggcttcaagt tcgaagtgat gcagtggctg
     7801 cggcccatcc tcgagcagtg gcgcacgagc ggccgcgact acgtgctgtg cggcgactgc
     7861 aacatcgtgc gcagcgaact cgacatccgc aactggaagt cgaaccagaa gaactccggc
     7921 tgcctgcctg ccgagcgcgc atggctcaac ggcctgtgcc atggccccac atccgacgga
     7981 agcatgggct gggtcgacac ctaccgcgcg ctgcacccgc aggggcagga ctacacctgg
     8041 tggagcaacc gcggcgcggc gcgcgcgaag aacgtcggtt ggcgcatcga ctaccagctc
     8101 gccacgccgt cgctgcgcga caagctgctt gcgtgcgaga tcaccccggc gccgcgcttt
     8161 tccgaccacg caccgttcac cgtggactac gcgctgtgag cgcggccgcg gaggcgacgg
     8221 cgccgcggaa gccgtcggtg tggcaggcct tcgcccggcc gtcggcgtgg acgctgttct
     8281 tcttcggctt cgcctcgggc ctgccgttcc tgctggtcgc cggcacgctc gcgtactggc
     8341 tcaaggacaa cgggatcgag ctgaaggaca tcaccctgat cgccagcgcc ggcatgacct
     8401 acgcgctgaa gttcctgtgg gcgccgctgc tcgaccacgc gcggccgccg ctgctggggc
     8461 gactgggcca gcgccgcggc tggctgctgc tggcgcagct cggcgtgacc ctcggcctgc
     8521 tggcgatgtc ggtggccacg cccgcccagc tcggcgcgtt cgtcggctgc accctgctgg
     8581 tcgccttcgc cggcgccacc caggacatcg cggtggatgc ctatcgcatc gagatcgcgc
     8641 cgccgtccgc gcagggcgcg ctggtcgcga cctattcgct cggctaccgc atcgcgctga
     8701 tcgtcaccgg tgcgttcgcg ctgttcatgg ccgaccacat ggcctggctg caggtgtatc
     8761 gcgccatggc gctgctgatg ctggtgccga tcgtggcgac cctgctcgcg cgcgagccgg
     8821 aggtgctgcg cacggtgccc gccgactggc acgccgcgat gcgcgaggcg gtggtcgatc
     8881 cgttcgccga tttcttccgc cgctacggct ggcggaccgc ggcgttgacg ctgctgttca
     8941 tcctgctgtt caagatcccc gagcaggcgc tggtcggcgg gatcatgagc ccgttctacc
     9001 tcgacatggg cttctccaag accgagatcg gcgcgatcac caagctctac ggcatctgga
     9061 tgggcatcct cggcgtgttc ctcgccggcc tcgcgatcgc gcgctggggc gtgcgcaagc
     9121 cgctgctcgc atcgatcgtg gtgtgcgcca gctgcaacct gctgtacgtg tggctgatcg
     9181 cgcacaaggg agaactcgcc gcgctgaccc tggtgatctc ggcggagaac atgagcctgg
     9241 gcttcctcgg caccgccgcg gtcgcgttcc tgtcctcgct ggtcaaccgc cagcacaccg
     9301 cgacccagta cgcgctgctc agctcgatgg tcaacctgcc cggcaaggtg ctgggcatct
     9361 tcgccggcgc gatcgtcgag gcgaccagct acgccagcta cttcgtcctc gccaccctgg
     9421 ccgtgctgcc ggcgacggcg ctgctgctgt acctgtggcc gcgcttccgc gaggccgacg
     9481 ccggcgccgg gcccggctga gccgcttcca ccgcggcgca gccgcgggca tgatcggccg
     9541 gtggctggcc gcccgtcccc cggcgccgcg tccagcccag cgaggaggcg cgatgaccga
     9601 catcatcctg cgcgacatcg acgcgaccct ggccgaccgc atccggcgga tcggcgaggc
     9661 ccacggctgg agtgcgtcgg acaccctgct gcacgtgctc gagtacggcc tgcacgcctg
     9721 cgaaggcgac ggccgcgccc ggctggatcc gcgcgagcgc gacgtgctcg gtgccgcgat
     9781 ccaggcgctg gaaggcgtcc cggacgaccc cggcttcgcc ctgatcggcc gcgcggggcc
     9841 ggtggacccc gcgccgcagc agcccgacca gcgcatccgg ccggagttct cgctggagta
     9901 gcggtccggc gccgcgcgcc gtcggcgggc taggcgtgat ggacc
//
LOCUS       DATIQC010000072         5921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_287438, whole genome shotgun sequence.
ACCESSION   DATIQC010000072 DATIQC010000000
VERSION     DATIQC010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5921
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287438"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(658..1935)
                     /locus_tag="VLM17_01575"
                     /pseudo
     CDS             complement(658..1935)
                     /locus_tag="VLM17_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410697.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
     gene            2081..2674
                     /locus_tag="VLM17_01580"
     CDS             2081..2674
                     /locus_tag="VLM17_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HSR64279.1"
                     /translation="MAVLILIVLVVVLALWAIGAYNGLVTARNAYKNAFAQIDVQLQR
                     RFDLIPNLVETAKGYIRHERETLEAVVAARGAAMAGLSAAKASPGDPGAMAELAASQG
                     ALNGALGRLMAVAEAYPDLKANQTMMQLSEELTSTENKVAFARQAFNDAVMVYNNRRE
                     VFPSSVIAGMAGFAPAAMLEIAAEQQAQVRAAPKVQF"
     gene            2751..4661
                     /locus_tag="VLM17_01585"
     CDS             2751..4661
                     /locus_tag="VLM17_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSR64280.1"
                     /translation="MNFFERQAAARRASTWLVVLFVLAVLAIVLAVDGAAYVVYGGSG
                     REPGETGALLVFCTLATIAVIGLGSLYRIASLRGGGETIALQVGGTPVPADTRDFNLR
                     RLHNVVEEIAIASGVPMPRLYVLEHEQAINAFAAGYAPSDAAVAVTRGALDRLNRDEL
                     QGVVAHEFSHILNGDMRLNIRLIGVLFGILMLALIGRKVLQYGGRGRNSRGAGAILFA
                     ALVAMVVGYIGLFFARMIKAGVSRSRESLADASAVQFTRQAQGLAGALKKIAGLQDGS
                     RLNDRGDAEEVSHMLFGDGVGFHGLFATHPPLLARIQALEPGFRGEQLARLQAQWLAT
                     PPDGMAEDAQLGLAADAGGRLPDAGGSFVVAPPAVAAQVASPSPGDYRRADAIAARIP
                     DPLRALATERDSVVPLLCALLLGQDEALVRRQADEIAARLGDAIAGRARTLHATELAG
                     LHPMLRLPLAALAFPALRLRPRPELGAFQDTVYAMVHADGEVSLFEFCLGRLLRVQVR
                     ESLEPARFAQFGRRKLGDVQVEVATLLAVVAQAGHDDPQQAQRAYLAGLQRVLPQAHA
                     AYAPPGRGVTALDDVLPALDALDPLAKQVLVEGIVAAIAFDGSVCVAEAELLRTLCAS
                     LHCPLPPMLAQA"
     gene            complement(4726..>5921)
                     /locus_tag="VLM17_01590"
     CDS             complement(4726..>5921)
                     /locus_tag="VLM17_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HSR64281.1"
                     /translation="GDTLHGGDGPLTVSDLSHVNPLTRAFVDAGEQLGLARNDDFNGP
                     VQEGVGLYQVTQRDGARCSAARAYLEPARPRRNLTVHTGAMASRITLDKGRATGVVYT
                     HLGKAFHQPAAREVLLCGGAINSPQLLMLSGIGPAAELRRHGIAVAHDAPGVGANLQD
                     HLDVCTLQHETTRTSYDRMSEARIAFDYFVRGRRGPGTSNIAEGGAFVRSPLAQDARA
                     DIQLHFIPAMIDDHGRHRLPGDGYTLHACFLRPRSRGRITLASNRAGDKPRIDPCYLG
                     DADGFDLRMLVECAKLSLELFAQPAFDDYRGAPIHPPRTDLSGAELVDFVRARAETVY
                     HPVGTCRMGGDDDAVVDVQLRVRGVDGLRVVDASVMPTLPGGNTNAPTIMIAERAADL
                     VRGLA"
BASE COUNT          788 a         2073 c         2201 g          859 t
ORIGIN      
        1 ccgcggcgaa gaagtcggcc gccaagcgtc cggcgaagaa ggccgccaag aagtccgcca
       61 agaaggcgac caagaaggct gccaagaagc ctgcggcgaa gaaggccgcg aagcgtccgg
      121 cgaagcgcaa ggccgccccc gtggcgatgc cggccgcccc ggcgccgatg atgtaagaac
      181 aaaaacaaac ccgattgccg taacacgact ccctccccgc ggcccaggcg gggagggagt
      241 tttttattgg gcgatggcgg gtcctgcgtc cggaccgggc gcttccagga tcgggtgact
      301 ccgcttccgc gctcgccgtg ggacgggcgg ggtcgccgca accagggcag tccgcgccgg
      361 gaacccatcg ggccggtgcg cgcgtcgggt gggcgtggcg gtcatctgcg ggaagccgac
      421 ccgggaagag cgttccgcga gttgccgggg acttcttcca tcctgcgcgt gctgcggccc
      481 aagacgccgc cgcccgcttt cgcgggcggc ggcggttccg ggggccggtg ttcccgggat
      541 cggttactgc ggtcgcgcgc gcgccgtcga ggcgttgccg ccggccggcg tcgcatcggc
      601 cgattcgtcg ggctcggcct ggttcttcgc gtacagcgtg ttgtcgaggg tgcgctcgtc
      661 gagccagtgc ggcgcgaggc cgagcgcgct gtcgaggatg gtcggcagca tggcgctcgg
      721 cagcgagctc tcgctgttcc agaggatcgc cacgccgagg tcgctttccg gcagcatcgc
      781 caccacgccg cggtagccct gcaccgcgcc gccgtggaag accacctggt ggccggcgta
      841 gttgtagacg cgccagccga tcgcgtagcc cgcgtcctcg aggcgctcgc gacgccagga
      901 cgaaccgcgc agttcgctcg gcgtcccgat caccggcgca tgcagggtcg ccagcagcga
      961 ggccggaagc acgtcgggcc gatggccggt ctgcgcgatc agccattgcg ccatgtcgct
     1021 gatgctggcg ttgacgcccg cggcgggcgc gacgcggtag tacgccggct tcggcagcag
     1081 cgacacccag ccgccgcgtc cgtgcacgtg cgggcgcgcc caatgcgggc tcgattcgat
     1141 gccatccagg cccacgctcg catcgcgcat gcccagcggc ttgaacacca gccgcgacac
     1201 cgcctcgccg tagctctgtc cggtcgccgc cttgaccact tcgccgatca ggctgaaggc
     1261 gacgttctgg taggcatagc actggcccgg ctggcaggcc atcggcgcgt aggcgagctt
     1321 ctgcaccagg gtcggatagt cgctgtcggc ctcgaggtcg tggtcgtagg cgttgcgggt
     1381 caggcccacg cggtggctga gcacgtcggc gacggtcagt tcctgcgcgg cgccgggctg
     1441 cgagagctgc agcgacggca tgtagtcggt caggtggctg tcccagcgca cctcgccctt
     1501 gttcaccagc aacccggtga cggtgccggc gaaggccttc gacagcgagg cgaggcggaa
     1561 caccgtgtgg gcgccgatcg ggtctccgtt gtcgatgtcg gacacgccgt aaccgcgcag
     1621 gctgaggacc tggccgttgc gcacgatcgc catcgccatg ccgggcacgc gctggtcggc
     1681 gaccagcgac tgggccaggg attcgaagcg cgcgacgtcg aagccggccg gcagcggcgg
     1741 cagcggcgtg ctgctcatga ccggttgggc cacgcgcgcg gtggtcgcga ccagcgcggc
     1801 gggcgccgcc gccgtcgcgg cgtgcgcggg aggcagcgcg gtctgcgcgg tcgagccgag
     1861 ggcgagcggc agcagcaccg ccagggtggc cagtcgccaa tggcgccggt gacggcgcac
     1921 ggtctcgctt tccatcggac gttcccccta cgtatgctgc gcgtgccggc cgatcataac
     1981 gtccctctca cgtcttgcat gaaccggggg cgggcgttcc acatggcgtg accggcgtcg
     2041 tgaaggtctt cacctcaccg aacccgacag gggaatgccg atggccgtcc tgatcctgat
     2101 tgtcctcgtc gtcgttctgg ccctgtgggc catcggggcc tacaacggcc tggtcaccgc
     2161 ccgcaatgcc tacaagaacg cctttgccca gatcgacgtg cagctgcagc ggcgcttcga
     2221 cctgatcccg aacctggtcg agaccgccaa gggctacatc aggcacgaac gcgaaacgct
     2281 cgaggccgtg gtcgccgcgc gcggcgccgc catggccggg ctgtcggcgg ccaaggccag
     2341 ccccggcgat ccgggcgcga tggccgaact cgccgcctcc cagggcgcgc tcaacggcgc
     2401 gttgggccgg ctgatggcgg tggccgaggc ctacccggac ctcaaggcca accagaccat
     2461 gatgcagctc tccgaggagc tgacctcgac cgagaacaag gtggccttcg cccgccaggc
     2521 cttcaacgac gcggtgatgg tctacaacaa ccggcgcgag gtgttcccct cgagcgtgat
     2581 cgccgggatg gccggcttcg ccccggccgc gatgctggag atcgccgccg aacagcaggc
     2641 gcaggtgcgg gcggcaccga aggtgcagtt ctaggagcgg gtgcggcaac gggaactccg
     2701 gccgtgctcc cgggcccccg tttccggtcc ccggcctgca gccgcgcgcc atgaacttct
     2761 tcgaacgcca ggccgccgcg cgccgcgcct cgacgtggct ggtggtgctg ttcgtgctcg
     2821 cggtgctcgc gatcgtgctc gcggtggacg gcgccgccta tgtcgtctac ggcgggtccg
     2881 gccgggagcc cggcgagacc ggcgcgctgc tggtcttctg cacgctggcg acgatcgcgg
     2941 tgatcgggct gggttcgctg taccggatcg cgtcgctgcg cggcggcggc gagacgatcg
     3001 cgctgcaggt gggcggcacg ccggtgccgg ccgacacccg cgacttcaac ctgcgccggc
     3061 tgcacaacgt cgtcgaggag atcgcgatcg cctccggggt gccgatgccg cgcctgtacg
     3121 tgctcgagca cgagcaggcg atcaacgcct tcgccgccgg ctacgcgcct tccgacgcgg
     3181 cggtcgcggt cacccgcggc gccctcgacc ggctcaaccg cgacgaactg cagggcgtcg
     3241 tcgcgcacga gttcagccac atcctcaacg gcgacatgcg gctcaacatc cgcctgatcg
     3301 gcgtgctgtt cggcatcctc atgctcgccc tgatcgggcg caaggtcctg cagtacggcg
     3361 gccgcgggcg caattcgcgc ggcgcgggcg cgatcctgtt cgccgcgctg gtcgcgatgg
     3421 tggtcggcta catcggcctg ttcttcgcgc gcatgatcaa ggccggcgtg agccgcagcc
     3481 gcgagtcgct ggccgatgcc agcgcggtgc agttcacccg ccaggcccag ggactcgccg
     3541 gtgcgctgaa gaagatcgcc ggcctgcagg acggttcgcg gctgaacgac cggggagacg
     3601 ccgaggaagt gagccacatg ctgttcggcg acggcgtcgg cttccacggc ctgttcgcga
     3661 cgcacccgcc gctgctcgcg cgcatccagg cgctggaacc cggcttccgc ggcgagcaac
     3721 tcgcgcggct gcaggcgcag tggctggcga cgccgcccga tggcatggcc gaggatgcgc
     3781 agctcggcct cgccgccgat gcaggcggac gcctgcccga tgccgggggc agcttcgtgg
     3841 tggcgccgcc cgcggtcgcg gcccaggtcg cgagcccctc tcccggcgac taccgccgcg
     3901 cggacgcgat cgcggcccgc atccccgacc cgttgcgcgc gctcgcgacc gaacgggaca
     3961 gcgtcgttcc gctgctgtgc gcgttgctgc tcgggcagga cgaggcgctc gtccggcgcc
     4021 aggcggacga gatcgccgcg cgcctcggcg atgcgatcgc cgggcgtgca cgcaccctgc
     4081 atgcgaccga actcgccggc ctgcacccga tgctgcgcct gccgttggcg gcgcttgcgt
     4141 tcccggcgct ccggctgcgg ccgcgaccgg aactcggcgc cttccaggac accgtctacg
     4201 cgatggtgca tgcggacgga gaagtctcgc tgttcgagtt ctgcctcggc cgcctgctgc
     4261 gggtgcaggt gcgcgaatcg ctggagccgg cccgcttcgc gcagttcggc cgccgcaagc
     4321 tcggtgacgt gcaggtggaa gtggccaccc tgcttgccgt cgtcgcccag gccggccacg
     4381 acgacccgca acaggcgcag cgcgcctacc tggccggcct gcagcgggtg ctgccgcagg
     4441 cccacgcggc ttatgcaccg cccgggcgag gcgtcacggc gctcgacgac gtcctgccgg
     4501 cgctggacgc gctcgacccg ctcgccaagc aggtgctggt ggaaggcatc gtcgcggcga
     4561 tcgccttcga cggcagcgtc tgcgtcgccg aggcggaact cctgcggacg ctctgcgcgt
     4621 cgctgcactg cccgttgccg ccgatgctgg cgcaggcgtg agcagcgccc ctgcgctcgc
     4681 tgcgtagcgc cgcgcatcgc tgcaccacgc ccacgggccg ggcgatcagg cgagtccgcg
     4741 gaccaggtcc gccgcgcgct cggcgatcat gatcgtgggc gcgttggtgt tgccgccggg
     4801 cagggtcggc atcaccgagg cgtcgaccac gcgcaggccg tccaccccgc gcacgcgcag
     4861 ctgtacgtcg acgacggcat cgtcgtcgcc gcccatccgg caggtgccga ccgggtggta
     4921 gacggtctcg gcgcgggcgc gcacgaagtc gacgagttcg gccccggaga gatcggtgcg
     4981 cggcggatgg atcggtgcgc cgcggtagtc gtcgaaggcg ggctgggcga acagctcgag
     5041 cgagagcttc gcgcattcga ccagcatgcg caggtcgaag ccgtccgcgt cgcccaggta
     5101 gcaaggatcg atgcgcggct tgtcgccggc ccggttgctg gcgagggtga tccggccgcg
     5161 gctgcgcggg cgcaggaagc aggcgtgcag ggtgtagccg tcgccgggca ggcggtggcg
     5221 gccgtggtcg tcgatcatcg ccgggatgaa gtgcagctgg atgtcggcgc gcgcgtcctg
     5281 cgccagcggc gagcgcacga acgcgccgcc ctcggcgatg ttgctggtgc ccgggccgcg
     5341 ccggccgcgc acgaaatagt cgaaggcgat cctcgcctcg ctcatgcggt cgtagctcgt
     5401 gcgcgtggtt tcgtgctgca gggtgcagac gtcgaggtgg tcctggagat tggcgccgac
     5461 cccgggggcg tcgtgcgcca cggcgatgcc gtggcggcgc agctccgcgg ccgggccgat
     5521 gccggacagc atgagcagct ggggcgagtt gatcgcgccc ccgcacagga gcacctcgcg
     5581 cgcggccggc tggtggaagg ccttgccgag gtgggtgtag accacgccgg tggcgcggcc
     5641 cttgtcgagg gtgatgcggc tcgccatcgc gccggtgtgc acggtcaggt tgcggcgcgg
     5701 gcgcgcgggc tcgaggtagg cgcgcgcggc cgagcagcgc gcgccgtcgc gctgggtgac
     5761 ctggtagagg ccgacgcctt cctgcacggg gccattgaag tcgtcgttgc gcgccaggcc
     5821 gagctgttca ccggcatcga cgaacgcgcg tgtgagcggg ttgacgtggc tcaggtcgga
     5881 gacggtcaac ggcccgtcgc cgccgtgcag cgtgtcgccg c
//
LOCUS       DATIQC010000073         5776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_110753, whole genome shotgun sequence.
ACCESSION   DATIQC010000073 DATIQC010000000
VERSION     DATIQC010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5776
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110753"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..2952)
                     /gene="polA"
                     /locus_tag="VLM17_01595"
     CDS             complement(172..2952)
                     /gene="polA"
                     /locus_tag="VLM17_01595"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008571146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HSR64282.1"
                     /translation="MPKLVLIDGSSYLYRAFHALPPLTNSAGEPTGALFGVVNMLRAH
                     LNEQPDCAAFVVDAPGKTFRDDLYPAYKANRAPMPDDLRAQMQPMCDIVQALGFPILR
                     IEGVEADDVIGTLALEAAREGSEVVISTGDKDFAQLVGAVGGGSIRLVNTMSGSVLDS
                     DETVLAKFGVRAGQIVDMLALMGDAIDNVVGVEKCGPKTAAKWLGEYGTLDGVIANAA
                     KIGGKIGDNLRAALARLPLNRTLVTIKTDVELELPARALKLRPRDADALRVLYTRYGF
                     NQALRELDGGGKPAAAAGERKVSMRGTEAGWARAGAKAEEDLDPALAAKGEYETVLTR
                     EQLAAWIARLRAADAFAFDTETDALDPLCANLVGISVAVDAGHAAYIPVGHDYPGAPG
                     QLPRDEVLDALRPLFADPGKRKIGHHGKYDLHVLRCHGVEVEGYAEDTMLQSFVFNAG
                     ASRHDMDSLAKRYLGYDTVRYEDVAGKGARQIRFSQVALDDATRYAAEDADVTLRLHG
                     QLRARVAAEPGLERVYREIEMPLVRVLERIEANGVLVDVDELRRQSAGLGKRMLDLQQ
                     RATALAGRTFNLDSPRQVCALLFEELKLPALVKTPTGQPSANEEALEAIADQHELPRV
                     ILDYRSLAKLRSTYTDKLPDMVNPRTGRVHTSYHQAGAATGRLSSNDPNLQNIPIRTE
                     DGRRIRKAFVAPAGRRIVAADYSQIELRIMAHLSEDPALLRAFSSGVDIHRATAAEVM
                     GKPLEAVEPNERRAAKAINFGLMYGMSAFGLAKQLGIGRGEAQDYIALYFSRYPGVRD
                     FMERTRQQAREQGYVETVFGRRLYLENIASRNAGLRAGAERAAINAPMQGTAADIIKR
                     AMIDIDGWLQQQAGRALMVLQVHDELVFEAEAGFVDTLLAEVRRRMAAAAELRVPLVV
                     DTGVGADWDEAH"
     gene            3041..3328
                     /locus_tag="VLM17_01600"
     CDS             3041..3328
                     /locus_tag="VLM17_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010893619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2782 domain-containing protein"
                     /protein_id="HSR64283.1"
                     /translation="MRQAVLPAATLLLAGCASMGGEPPIPAGAVAAVHTEANGDVVSE
                     YRVQGQLRMVRVQPKNGPVYYLMDSNGDGRLDSSSRDRNGVSPVYYRIYGW"
     gene            complement(3404..4480)
                     /locus_tag="VLM17_01605"
     CDS             complement(3404..4480)
                     /locus_tag="VLM17_01605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR64284.1"
                     /translation="MATRKAAKKPSGSAGRQGAARQREIQQEAQARNRREGERQQAKP
                     SASKKSAAKGAAASKSAAGKPEKRPVQAGPRRQPQNPLPAQHQAKPGHEHQLDPQPRF
                     LAPDYQGSGKLQDMVALVTGGDSGIGRAVAVLFAREGADVAIVYLSEDQDARATRAHV
                     EREGRRCIAIAGDVKDPRFCEQAVERTLDAFGRLDVLVNNAAFQQHSRSLEDITEDHL
                     QETLQTNIGGYFHMARAALPHMTEGGSIINTGSETALFGSRHLLDYSATKGAIHAFTR
                     SLASNLLERGIRVNAVAPGPVWTPLNPADQPARKVADFGKDSDMGRPAQPEEISPAYV
                     FLAAPVCASYVNGVVLPVMGGPRG"
     gene            4607..4996
                     /locus_tag="VLM17_01610"
     CDS             4607..4996
                     /locus_tag="VLM17_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HSR64285.1"
                     /translation="MEWYLKVLKNYVNFGGRARRKEYWMFFLFNLLIAFGLGLVDGVM
                     GWKNGWGMGRLGGLYNLFVLLPSIAVGARRLHDIGRSGWWQLIGLVPILGWIVLIVWA
                     ASEGAQGANEYGPDPKADDGGGVPAMA"
     gene            complement(5050..>5776)
                     /locus_tag="VLM17_01615"
     CDS             complement(5050..>5776)
                     /locus_tag="VLM17_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014648867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSR64286.1"
                     /translation="ARSGLRTHYANESRGQLDSRTDNLDELVSVASRFVQRDDDEEAA
                     ALSELVAFLSYASLEAGEGQAQAGEDGVQLMTLHSAKGLEFPLVFLAGLEEGLFPSMK
                     SSEELGRLEEERRLAYVGITRARQKLVLSYAEARRIHGSDMYGVPSRFLREIPAALLN
                     EVRPRVQVTRPAFAPAPRRDMGHAAIETPAIRLGQNVSHPSFGRGVVTDYEGSGAHAR
                     VQVSFDDAGSKWLVLAYANLQAV"
BASE COUNT          750 a         2051 c         2046 g          929 t
ORIGIN      
        1 ggaggagtcg ttcgttccgg ggatcactcc aggggaggga gagatcgtgc gacagacctt
       61 gcatctgtcg cgacctatat gaccatccgg cgcatggatg gttcgtgaag gattccgtta
      121 agaaaccgtg gggttcagga aagattcact gcctccgcgc cgccgacggg gtcagtgcgc
      181 ctcgtcccag tcggccccga cgccggtgtc gaccaccagc ggcacccgca gctcggccgc
      241 cgccgccatc cgccggcgca cctcggcgag cagggtgtcg acgaagccgg cctcggcctc
      301 gaacaccagt tcgtcgtgca cctgcagcac catcagcgcg cgcccggcct gctgctgcag
      361 ccagccgtcg atgtcgatca tcgcccgctt gatgatgtcg gcggcggtgc cctgcatcgg
      421 cgcattgatc gcggcgcgtt cggcgccggc gcgcaggccg gcgttgcgcg aggcgatgtt
      481 ctccaggtac agccggcggc cgaacacggt ctcgacgtag ccctgctcgc gcgcctgctg
      541 gcgggtgcgc tccatgaagt cgcgcacgcc cggatagcgg ctgaagtaca gcgcgatgta
      601 gtcctgcgcc tcgccacggc cgatgccgag ctgcttggcc agcccgaacg cgctcatgcc
      661 gtacatcagg ccgaagttga tcgccttggc cgcgcgccgc tcgttcggct cgaccgcctc
      721 cagcggcttg cccatcactt ccgccgcggt cgcgcggtgg atgtccaccc cggaggagaa
      781 cgcgcgcagc agcgccggat cctccgacag gtgggccatg atcctcagtt cgatctgcga
      841 atagtcggcg gcgacgatgc gccgtcccgc cggcgccacg aaggccttgc ggatgcggcg
      901 gccgtcctcg gtgcggatcg ggatgttctg caggttggga tcgttcgacg acagccgccc
      961 ggtcgccgcg ccggcctggt gatagctggt gtgcacgcgc ccggtgcgtg ggttgaccat
     1021 gtccggcagc ttgtcggtgt aggtgctgcg cagcttggcc aggctgcggt agtcgaggat
     1081 gacgcgcggc agctcgtgct ggtccgcgat cgcctccagc gcctcctcgt tcgcgctggg
     1141 ctggccggtc ggcgtcttca ccagcgccgg cagcttgagc tcctcgaaca gcagcgcgca
     1201 cacctgcctg ggcgagtcga ggttgaacgt gcggccggcc agcgcggtgg cgcgctgctg
     1261 caggtccagc atgcgcttgc cgaggccggc cgattggcgg cgcagctcgt cgacatccac
     1321 cagcacgccg ttggcctcga tgcgctcgag cacgcgcacc agcggcatct cgatctcgcg
     1381 gtagacccgt tccaggcccg gttcggcggc cacgcgcgcg cgcagctggc cgtgcaggcg
     1441 cagggtgacg tccgcatcct cggcggcgta gcgcgtcgca tcgtccagcg ccacctgcga
     1501 gaagcggatc tgcctggcgc ccttgccggc gacgtcctcg tagcggaccg tgtcgtagcc
     1561 gaggtagcgc ttggccagcg agtccatgtc gtgccggctc gcgccggcgt tgaacacgaa
     1621 gctctgcagc atcgtgtcct cggcatagcc ctccacttcg acgccgtggc agcgcagcac
     1681 gtgcaggtcg tacttgccgt ggtggccgat cttgcgcttg ccgggatcgg cgaacagcgg
     1741 gcgcagcgcg tccagcacct catcgcgcgg cagctgcccc ggcgcgcccg ggtagtcgtg
     1801 cccgaccggg atgtaggcgg cgtggcccgc gtcgaccgcc acgctgatcc cgaccaggtt
     1861 cgcgcacagc ggatcgagcg catcggtttc ggtatcgaag gcgaaggcgt cggcggcccg
     1921 gaggcgcgcg atccatgccg cgagctgttc gcgggtcagc accgtctcgt attcgccctt
     1981 ggcggcgagc gccggatcca ggtcttcttc ggccttcgcc ccggcgcgcg cccagcccgc
     2041 ctcggtgccg cgcatgctga ccttgcgctc gcccgcggcc gccgcgggct tgccgccgcc
     2101 gtccagctcg cgcagcgcct ggttgaagcc gtagcgggtg tacagcacgc gcagcgcgtc
     2161 ggcgtcccgc gggcggagct tgagcgcgcg cgccggcagc tcgagttcca cgtccgtctt
     2221 gatcgtcacc agcgtgcggt tgagcggcag gcgcgccagc gccgcgcgca ggttgtcgcc
     2281 gatcttgccg ccgatcttcg cggcgttggc gatcacgccg tccagcgtgc cgtattcgcc
     2341 aagccacttg gccgcggtct tcggcccgca cttctccacg ccgacgacgt tgtcgatggc
     2401 gtctcccatc agcgcgagca tgtcgacgat ctggcccgcg cgcacgccga acttggcgag
     2461 caccgtctcg tccgaatcga gcacgctgcc gctcatggtg ttgaccaggc ggatgctgcc
     2521 gccgccgacg gcgccgacca gctgggcgaa gtccttgtcg ccggtggaga tgaccacctc
     2581 gctgccctcg cgcgcggcct ccagcgcgag cgtgccgatc acgtcgtcgg cctccacgcc
     2641 ctcgatgcgc aggatcggga agccgagcgc ctgcacgatg tcgcacatcg gctgcatctg
     2701 cgcgcgcagg tcgtccggca tcggcgcgcg gttggccttg taggcgggat agaggtcgtc
     2761 gcggaacgtc ttgccagggg cgtcgaccac gaacgcggcg cagtccggct gctcgttcag
     2821 gtgcgcgcgc agcatgttga ccacgccgaa cagcgcgccg gtcggctcgc cggcgctgtt
     2881 ggtcagcggc ggcagcgcat ggaaggcgcg gtagaggtag gacgacccgt cgatcaggac
     2941 cagtttcggc atcggtggat tctacgccgc gcatcctgca cacggcccgg ccacgccggg
     3001 tcggcataag atgggcgcga cccgactgcg gagttccgcc atgcgccagg ccgtcctgcc
     3061 cgccgcgacc ctcctgctcg ccggctgcgc cagcatgggc ggggaaccac cgattcccgc
     3121 cggcgcggtc gccgccgtcc ataccgaggc caacggcgac gtcgtctccg aataccgggt
     3181 gcagggccag ctgcgcatgg tgcgcgtgca gcccaaaaac ggtccggtgt actacctgat
     3241 ggacagcaac ggcgacggcc gcctggacag cagctcgcgc gaccgcaacg gcgtgtcgcc
     3301 ggtgtactac cggatctacg ggtggtagcc gggcaggcgc agcgcacccg ggcccgacga
     3361 cccgggcgcg ggcttcggcc tggcccgggc tacgccgacg ccgtcacccg cgcggcccgc
     3421 ccatcaccgg cagcaccacg ccgttgacgt aactggcaca gaccggtgcg gccaggaaga
     3481 cgtacgcggg cgagatttcc tccggttgcg ccggccggcc catgtcgctg tccttgccga
     3541 agtcggccac cttgcgcgcc ggctggtcgg cgggattgag cggcgtccac accgggcccg
     3601 gcgcgaccgc gttcacgcgg atgccacgct cgagcaggtt gctggccagc gacctggtga
     3661 aggcgtggat cgcgcccttg gtggcggaat agtcgagcag gtgcctgctg ccgaacaacg
     3721 cggtctccga gccggtgttg atgatgctgc cgccctcggt catgtgcggc agcgccgcgc
     3781 gcgccatgtg gaagtagccg ccgatgttgg tctgcagggt ttcctgcagg tggtcctcgg
     3841 tgatgtcctc gagcgagcgg ctgtgctgct ggaaggcggc gttgttgacc agcacgtcga
     3901 gccggccgaa tgcgtcgagc gtgcgttcga ccgcctgctc gcagaagcgc ggatccttga
     3961 cgtcgccggc gatcgcgatg cagcgccggc cctcgcgctc gacatgcgcg cgggtggccc
     4021 gcgcatcctg gtcctcgctg aggtagacga tggcgacgtc cgcgccctcg cgcgcgaaca
     4081 gcaccgccac cgcgcggccg atgcccgagt cgccgcccgt caccagcgcg accatgtcct
     4141 gcagcttgcc gctgccctgg tagtcgggcg cgaggaagcg cggctgcgga tcgagctggt
     4201 gctcgtggcc cggcttggcc tggtgctgcg ccggcagcgg gttctgcggc tggcggcgcg
     4261 gcccggcctg caccggccgt ttctccggct tgccggcggc ggacttcgac gcggcggcgc
     4321 ccttcgcggc gctcttcttc gatgccgacg gcttcgcctg ctgccgttcc ccttcccggc
     4381 ggttgcgcgc ctgcgcttcc tgctggatct cgcgctgccg ggccgcgccc tgccggcccg
     4441 cgctgcccga tggtttcttc gccgccttcc tggtcgccat gccgccttcc tcgccgagac
     4501 ccggtccgga tcgtccgggc ggggccgttc aggccacgtg accggggcgc atgcgttggc
     4561 atagcatcgg cccgcggcgg ggagccgctc gaccaagggg aatccgatgg agtggtacct
     4621 gaaggtgctg aagaactacg tcaacttcgg cgggcgcgca cgccgcaagg aatactggat
     4681 gttcttcctg ttcaacctgc tgatcgcgtt cggcctcggc ctcgtcgacg gcgtgatggg
     4741 ctggaagaac ggctggggca tgggccggct gggcggcctg tacaacctgt tcgtgctgct
     4801 gccgagcatc gcggtgggcg cgcgccgcct gcacgacatc ggccgcagcg gctggtggca
     4861 gctgatcggg ctggtgccga tcctcggctg gatcgtgctg atcgtgtggg cggcgagcga
     4921 aggcgcgcaa ggcgccaacg agtacggccc ggatcccaag gccgacgacg gtggcggcgt
     4981 gccggcgatg gcctgacgcc accccgcacg caaacccgga acggcgcctg cgggcgccgt
     5041 tccttttcgc tacaccgcct gcaggttggc gtaggcgagc accagccact tgctgccggc
     5101 gtcgtcgaaa ctgacctgca cgcgtgcgtg cgcgccgctg ccctcgtagt cggtgaccac
     5161 gccgcggccg aagctcggat ggctgacgtt ctggccgagg cggatcgccg gcgtttcgat
     5221 cgcggcgtgc cccatgtccc gccgcggcgc cggtgcgaac gccggccgcg tcacctgcac
     5281 gcgcgggcgc acctcgttga gcagggccgc ggggatctcg cgcaggaagc gcgacggcac
     5341 gccgtacatg tcgctgccgt ggatgcgccg cgcctcggcg tagctgagca ccagcttctg
     5401 ccgcgcgcgg gtgatgccga cgtaggccag gcgccgctct tcctccaggc ggccgagttc
     5461 ctcgctcgac ttcatgctcg ggaacaggcc ttcctcgagg ccggcgagga acaccagcgg
     5521 gaattccagg cccttggccg aatgcagggt catcagctgc acgccgtcct cgccggcctg
     5581 ggcctggccc tcgccggctt ccagcgatgc gtaggacagg aaggcgacca gctcgctcag
     5641 cgccgccgcc tcctcgtcgt cgtcgcgctg gacgaaacgc gaggcgaccg acaccagttc
     5701 gtccaggttg tccgtgcgcg agtccagctg cccgcgcgat tcgttggcat agtgcgtgcg
     5761 caggccggaa cgcgcg
//
LOCUS       DATIQC010000074         3164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_464155, whole genome shotgun sequence.
ACCESSION   DATIQC010000074 DATIQC010000000
VERSION     DATIQC010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464155"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..515
                     /locus_tag="VLM17_01620"
     CDS             <1..515
                     /locus_tag="VLM17_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HSR64287.1"
                     /translation="IHEAMPGHYLEGAYSARYPSTLRGVLRSGLFAEGWAVYTENMMT
                     HAGYMDGDPLFHLVQLKFYLRTIANALLDQGVHVDGWSREQAMHLMTHDTFQQEREAA
                     GKWVRAQLTSAQLPTYFVGVQEQLDTRKAVEAKRGAAFDLKAYHDQVLSYGAPPVRFV
                     RELMLDQPIE"
     gene            596..>3164
                     /locus_tag="VLM17_01625"
     CDS             596..>3164
                     /locus_tag="VLM17_01625"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSR64288.1"
                     /translation="MHQHGQGETGAAEQSGLDPASALLATQSPAALSALLGTLHPALA
                     ERVEAVLWSAHWPQRLASRPAAALSEAAATRTIREISARRAGARPDPRYALLCDDHAA
                     DVAVLVLREPLPADPSLAPLLARAGARMAELLERERLHESVTQLEDAERLQRALYAIA
                     DMAGSDFDMPDLLRGLHRIVADLMYAENFYIALYDDEHDSLRFVYFADTVDSLGPSLT
                     ETVPMARIERGLTWYLVRDGRPLMGTTEQLQQQVSGPLALHGADSVDWLGVPMLREGR
                     VIGALVVQSYLEGVRYTHADMSLLAFVAEHVLTALERKRSQEELEQRVAERTRELAAA
                     NTELSREVAERQRGERLQAALYQIAALAGSDESAETFYRHVHEIVGGLIDARNFYIAL
                     VSDDGASVSFPYAVDETETDWRTRPFGNGLTEYVLRSGRTQVVGRGRELELVDSGEVD
                     RRFVGSGATLWVGAPLLDVDRALGVVAVQSYEKTPAYDERDAELLTFVSYQIAASLQR
                     RRAAEALKEANARLEERVELRTRELREQIAQRELVEAQLKHQVMHDALTGLPNRVYLR
                     DRIERAIAQVRRDPERNFALLYIDVDRFKQINDSLGHLAGDHVLKEVSRRLESVVREP
                     DVVARLSGDEFAVLLESVDLPETATKVAQRIVGLQHGPIEFGEHSLQCSASIGVAIGD
                     RRYHSVDAILRDADIALYRAKQHGRNRFVLFDDQLHRAAMDDIALEQELRAVDNRDAF
                     IPWFQPLVRLEDAAVAGYEALLRWQHPQRGVLAPADFLQVAEDTGLIEQIDWQVFRHA
                     CEGARQLLLPGQFVAVNVTPRLLRLRDFDTRLLALLDDSGLPRTALRIEVTEEALFGD
                     "
BASE COUNT          476 a         1160 c         1097 g          431 t
ORIGIN      
        1 ccatccacga ggcgatgccg gggcattacc tcgaaggtgc gtactccgcg cgctatccct
       61 cgaccctgcg cggcgtgctg cgctcgggcc tgttcgccga gggctgggcg gtctacaccg
      121 agaacatgat gacgcacgcc gggtacatgg acggcgatcc gctgttccac ctcgtgcagc
      181 tgaagttcta cctgcgcacc atcgccaacg cactcctcga ccagggcgtg cacgtcgacg
      241 gctggagccg cgagcaggcc atgcacctga tgacccacga caccttccag caggagcgcg
      301 aggcggcggg caagtgggtg cgggcgcagc tgaccagcgc gcagctgccg acctatttcg
      361 tcggcgtgca ggagcagctg gacacccgca aggcggtcga ggcgaagcgg ggcgccgcct
      421 tcgacctcaa ggcctaccac gaccaggtgc tgtcctacgg tgcgccgccg gtgcgtttcg
      481 tgcgcgaact catgctcgac cagcccatcg aatagggacg gccggtccgg cgtcgtcacc
      541 acgttctaac gatcgtgggc aacgccggcg ctaagctcgg tatagggggg tgcccatgca
      601 ccaacacggc cagggcgaga ccggggccgc ggaacagtcg ggactggacc cggcctccgc
      661 cctgctcgcc acccagtcgc ccgcagcgct ctccgcgctg ctcgggacct tgcatccggc
      721 gctcgccgag cgcgtggagg cggtcctgtg gtcggcgcac tggccgcagc ggctggccag
      781 ccggccggcg gccgccctga gcgaggccgc ggccacccgc acgatccgcg agatctccgc
      841 ccgccgcgcc ggcgcccggc cggatccccg ctacgccctg ctctgcgacg accacgccgc
      901 cgacgtcgcg gtgctggtcc tgcgcgagcc gctcccggcc gatccgtcgc tcgccccgct
      961 gctcgcccgg gccggcgcac gcatggccga gctgctcgag cgcgagcgcc tgcacgagag
     1021 cgtgacccag ctggaggacg ccgagcgcct gcagcgcgcg ctgtacgcca tcgccgacat
     1081 ggcgggctcc gacttcgaca tgccggacct gctgcgcggc ctgcaccgca tcgtcgccga
     1141 cctgatgtac gcggagaact tctacatcgc gctgtacgac gacgagcacg acagcctgcg
     1201 cttcgtctac ttcgccgaca cggtcgacag cctcggcccg tcgctgaccg aaacggtgcc
     1261 gatggcgcgc atcgagcgcg gcctgacctg gtacctcgtg cgcgacggcc gcccgctgat
     1321 gggcacgacc gagcagctgc agcagcaggt gtccggtccg ctcgccctgc acggcgccga
     1381 cagcgtggac tggctgggcg tgccgatgct ccgcgagggc cgggtgatcg gcgcgctggt
     1441 cgtgcagagc tacctcgagg gcgtgcgcta cacccacgcc gacatgagcc tgctggcctt
     1501 cgtcgccgag cacgtgctga ccgcgctgga gcgcaagcgc tcgcaggagg agctcgagca
     1561 gcgcgtcgcc gagcgcacgc gcgagctcgc cgccgccaat accgagctca gccgcgaggt
     1621 cgccgaacgg cagcgcggcg agcgcctgca ggcggcgctg taccagatcg ccgcgctcgc
     1681 cggcagcgac gaatcggccg agaccttcta ccgccacgtc cacgagatcg tcggcggcct
     1741 gatcgacgcg cgcaacttct acatcgcgct cgtgtccgac gacggcgcca gcgtgtcctt
     1801 cccgtacgcg gtcgacgaaa cggagacgga ctggcgcacc cggccgttcg gcaacggcct
     1861 gaccgaatac gtgctgcgca gcggacggac ccaggtcgtc ggccgcgggc gcgaactgga
     1921 gctggtcgac agcggcgagg tcgaccggcg cttcgtcggc tcgggcgcca ccttgtgggt
     1981 gggcgccccg ctgctcgacg tggaccgcgc gctcggcgtg gtcgcggtgc agtcgtacga
     2041 aaagacgccg gcctacgacg agcgcgacgc cgaactgctc accttcgtct cctaccagat
     2101 cgccgccagc ctgcagcgcc ggcgcgcggc cgaggcgctg aaggaagcca acgcacggct
     2161 ggaggagcgc gtcgaactgc gcacccgcga gctgcgcgag cagatcgccc agcgcgagct
     2221 ggtcgaggcg caactcaagc accaggtgat gcacgacgcg ctcaccggcc tgcccaaccg
     2281 cgtctacctg cgcgaccgca tcgagcgcgc gatcgcccag gtgcggcgcg atcccgagcg
     2341 caacttcgcc ctgctctaca tcgacgtcga ccgcttcaag cagatcaacg actcgctcgg
     2401 ccacctcgcc ggcgaccacg tgctgaagga ggtttcgcgg cggctggaaa gcgtggtgcg
     2461 cgagccggac gtggtcgcgc gcctgtcggg ggacgagttc gccgtgctgc tggagtccgt
     2521 cgacctgccc gagaccgcga ccaaggtcgc gcagcgtatc gtcggcctgc agcacgggcc
     2581 gatcgagttc ggcgaacaca gcctgcagtg cagcgccagc atcggcgtgg cgatcggcga
     2641 ccgccgctac cacagcgtcg atgcgatcct gcgcgacgcg gacatcgcgc tgtaccgcgc
     2701 caagcagcac ggccgcaacc gcttcgtgct gttcgacgac cagctgcacc gcgcggcgat
     2761 ggacgacatc gcgctcgagc aggagctgcg cgcggtggac aaccgcgacg cgttcattcc
     2821 atggttccag ccactggtgc ggctggagga cgccgccgtc gccggctacg aggcgctgct
     2881 gcgctggcag catccccagc gcggcgtgct ggcgccggcg gacttcctgc aggtcgccga
     2941 ggacaccggg ctgatcgagc agatcgactg gcaggtgttc cggcatgcct gcgagggcgc
     3001 gcgccagttg ctgctgcccg ggcagttcgt ggcggtcaac gtgacgcctc ggctgctgcg
     3061 actgcgcgac ttcgacaccc gcctgctcgc gctgctggac gacagcggcc tgccccgcac
     3121 cgcgctgcgg atcgaggtca ccgaggaagc gctgttcggc gatc
//
LOCUS       DATIQC010000075         2502 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_181617, whole genome shotgun sequence.
ACCESSION   DATIQC010000075 DATIQC010000000
VERSION     DATIQC010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181617"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..442
                     /locus_tag="VLM17_01630"
     CDS             170..442
                     /locus_tag="VLM17_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HSR64289.1"
                     /translation="MPKFIIERNIPGAGKLSSQELQAISQKSCGVLNAMGPQIQWRES
                     YVTPDKVYCVYIAPDEEMVREHARQGGFPADAVNRVSAVIDPTTAG"
     gene            complement(443..1744)
                     /locus_tag="VLM17_01635"
     CDS             complement(443..1744)
                     /locus_tag="VLM17_01635"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005995974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004810 - CCA tRNA nucleotidyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001680 - tRNA 3'-terminal CCA addition
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HSR64290.1"
                     /translation="MEQLQTYLVGGAVRDRLLGLPHGDRDFVVVGATPEAMLARGFRA
                     VGRDFPVFLHPETNEEYALARTERKSGRGYRGFVVDADPSVTLEQDLARRDFTINAIA
                     QDAHGALVDPFGGARDVEARVLRHVGPAFVEDPLRVLRAARFLARFAPLGFSLAPETA
                     ALMREMAASGELSALTPERVWQELARALASPRPSAFLRALHDCGALAAVLPEVDALYG
                     VPQRADFHPEVDTGVHVELVCDMAAALAPGDALVGFAALTHDLGKALTPGFVLPKHLG
                     HEHAGLAPLAALCERLKVPAAHRQLAEMACREHLNVHRLFELRAKTVHDLLARCDGFR
                     QPARIALLALACEADKRGRAGLQDAPYPQGPELLRLQQAALAVRAADVAREGLAGPAL
                     GEALRKARIRAIQTARSEAAHSETASAADDDGGEDEGEGDA"
     gene            complement(2052..>2502)
                     /locus_tag="VLM17_01640"
     CDS             complement(2052..>2502)
                     /locus_tag="VLM17_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HSR64291.1"
                     /translation="MATAAKLGLPWGGAQSLYDPDTNIVLGSAYLRELLDRYGGLPYM
                     AIAGYNAGPTPLARWQAQHAGMDADFWIETISYKETRDYVARVLAFSTIYDWRLNGNA
                     LPLGDRMQGRTQAPRKAFTCPLVAPPSPKALAAPPADEKNKAKARKR"
BASE COUNT          347 a          872 c          919 g          364 t
ORIGIN      
        1 tccacgacga actcgccaac tgcagcggcg tgctgctcgg cctcgcggtc gcattcacgc
       61 cgttgcgcga cctgctgctg cgccgcgcgc gccgcgcctg aacccggccg cccgcgccgc
      121 actccggcgt tgcttccggt accggcgacg tgccgggcag gagcgaccaa tgccgaagtt
      181 catcatcgag cggaacatcc ccggcgcggg caagctgtcg tcgcaggaac tgcaggcgat
      241 ctcgcagaag tcctgcggcg tgctcaacgc gatgggcccg cagatccagt ggcgcgaaag
      301 ctacgtcacc cccgacaagg tgtactgcgt gtacatcgcg cccgacgagg aaatggtgcg
      361 cgagcacgca cgccagggcg gctttccggc cgacgcggtg aaccgggtga gcgcggtgat
      421 cgatccgacc accgcgggct gatcaggcgt cgccttcgcc ttcgtcttcg ccgccatcgt
      481 cgtcggccgc ggacgcggtc tcgctgtggg cagcctcgct gcgagcggtt tggatcgcgc
      541 ggatgcgcgc cttgcgcaac gcctcgccca gcgcgggacc ggccaggcct tcgcgggcca
      601 cgtcggccgc gcgcaccgcg agcgcggctt gctgcaggcg cagcagttcc gggccctgcg
      661 gatagggtgc gtcctgcagg cccgcgcggc cgcgcttgtc ggcctcgcac gccagcgcga
      721 gcagggcgat gcgcgcgggc tggcggaagc cgtcgcagcg cgcgaggagg tcgtgcacgg
      781 tcttcgcgcg caactcgaac aagcggtgca cgttgaggtg ctcgcgacag gccatttcgg
      841 cgagctggcg atgcgcggcc ggcaccttca gccgctcgca cagcgcggcc agcggcgcga
      901 gcccggcgtg ctcgtggccg aggtgcttcg gcagcacgaa cccgggcgtg agcgccttgc
      961 cgaggtcgtg ggtcagcgcg gcgaagccga ccagggcgtc gcccggggcg agcgccgcgg
     1021 ccatgtcgca gaccagttcg acatgcacgc cggtgtccac ttcgggatgg aagtcggcgc
     1081 gttgcggcac gccgtacagc gcgtcgactt ccggcagcac cgcggcgagc gcgccgcagt
     1141 cgtgcagcgc tcgcaggaac gccgacggcc ggggcgacgc aagcgcgcgc gccagttcct
     1201 gccacacgcg ttcgggcgtg agcgcggaca gctcgccgga agcggccatc tcgcgcatca
     1261 gcgcggcggt ttccggcgcg agggagaagc ccagcggcgc gaagcgggcg aggaaacgcg
     1321 ccgcgcgcag cacgcgcagc gggtcctcga cgaaggcggg gccgacatgg cgcagcacgc
     1381 gcgcctcgac gtcgcgcgcg ccgccgaacg ggtcgaccag cgcgccgtgc gcgtcctgcg
     1441 cgatcgcgtt gatggtgaag tcgcgccgcg cgaggtcctg ttcgagggtc accgagggat
     1501 cggcgtccac cacgaagccg cggtagccgc gcccggactt gcgttcggtg cgcgcgagcg
     1561 cgtactcctc gttcgtttcg ggatgcagga acaccgggaa atcgcgcccc accgcacgga
     1621 agccgcgcgc gagcatcgct tcgggcgtgg cgccgacgac cacgaagtcg cggtcgccgt
     1681 gcgggagtcc gagcaggcgg tcgcgcaccg cgccgccgac gaggtaggtc tggagctgct
     1741 ccattcgccg atcatcgcat cggagcggcc cggccgctcg aagcggaatt ccgttcgtgg
     1801 tggggcccgt cgaaccatgg acggatttcc gatgcgtcgc gttcgttcgt cttcgacagt
     1861 ccgaggacga gcggagcggg atcgcgatga gactcgccac ggatggatgc ctcgaccggc
     1921 ttcgcgcccg gctcgcatag ccgcgcgtgg tgagcttgtc gagccacgga gggcggaaac
     1981 gcagccggcg cccgtcgttg accttcgaca ggctcagggc gaacgggatt cgtccctgcc
     2041 agcctttcga ctcaacgctt cctcgccttt gccttgttct tttcgtccgc cggcggtgca
     2101 gccagcgctt tcggcgacgg cggcgccacc agggggcagg tgaaggcctt gcgcggcgcc
     2161 tgcgtgcgtc cctgcatgcg atcccccagc ggcagggcgt tgccgttgag ccgccagtcg
     2221 tagatggtgc tgaaggcgag cacccgggcg acgtagtcgc gggtttcctt gtagctgatc
     2281 gtctcgatcc agaagtccgc gtccatgccc gcgtgctgcg cctgccagcg tgccagcggc
     2341 gtcggccctg cgttgtagcc ggcgatcgcc atgtagggca ggcccccata cctgtcgagc
     2401 agttcgcgca ggtaggcgct gccgagcacg atgttggtgt cggggtcgta cagcgactgc
     2461 gcgccgcccc agggcaggcc gagcttcgcc gcggtggcca tg
//
LOCUS       DATIQC010000076         1904 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_428902, whole genome shotgun sequence.
ACCESSION   DATIQC010000076 DATIQC010000000
VERSION     DATIQC010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_428902"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VLM17_01645"
     CDS             complement(<1..275)
                     /locus_tag="VLM17_01645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64292.1"
                     /translation="MSELAQAPTQLPLRPQDEVECRRCDVHCDKVVYPGVCLERSCPF
                     VYAYEAWGRTYMGCMQKVFDVEIDLDLLRAAQEQRGGFGGVRARRAPL"
     gene            506..616
                     /locus_tag="VLM17_01650"
                     /pseudo
     CDS             506..616
                     /locus_tag="VLM17_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155671.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VUT family protein"
     gene            complement(647..1399)
                     /locus_tag="VLM17_01655"
     CDS             complement(647..1399)
                     /locus_tag="VLM17_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005990074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR64293.1"
                     /translation="MSWQLRFIGVGNSSAVGLGSAMAAIERDGAPWLAIDCGAEGLTA
                     WLQQYGAYPDALFLTHAHFDHIAGFERLFGANYFGGRQRLTRLFVPAPLVPLLQQRVA
                     SYPNVAAEGGANFWDAFQLVPVGDHFWLHGVRVEVFPVRHHWPDTAFGLRLPGSLVWT
                     GDTRPIPEMLARYADAGELVAHDCALHGNPSHSGIDDLEREYPRELLARCVLYHFASA
                     AEAEALSARGHRVARPGQVLALQPPGADAMAR"
     gene            complement(1401..>1904)
                     /locus_tag="VLM17_01660"
     CDS             complement(1401..>1904)
                     /locus_tag="VLM17_01660"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HSR64294.1"
                     /translation="RDGYIWHGPGRARSFAEFRLARLLHQRGLPVPRPVAACYWRKGA
                     GYRAAILIERLPGVHSLAERAAVAGHDAPWEETGRLVARFHRAGLDHADLNAHNILFD
                     ATGQGWLIDFDKGRLRIPATGWRERNLARLKRSLLKVRGERPAMEVKHDFARLRGAYD
                     ATWQRGY"
BASE COUNT          281 a          684 c          688 g          251 t
ORIGIN      
        1 agcggcgccc gccgcgcccg cacgccgccg aacccgcccc gctgctcctg cgccgcacgc
       61 aacagatcga ggtcgatctc gacgtcgaag accttctgca tgcagcccat gtacgtgcgg
      121 ccccacgcct cgtacgcgta cacgaacgga caggagcgct cgagacagac accggggtat
      181 acgaccttgt cgcagtggac gtcacagcgc ctgcactcga cctcgtcctg gggtctgagc
      241 gggagctggg tgggcgcctg cgcgagttcg ctcaccgcaa gatcgtggca gcggggacgc
      301 ggcctgcgca agacttgaca ttcgcggccg agaggggtag ggcgcggagg cgccccggtt
      361 ccacccggct ctcgatgcac gcgcgaacac gtaggttgga accgtggtga gacggatctt
      421 gaccgcgggt ctggcgctcg ccccgatttc gctcgccctg cactgggccg cctcgccggg
      481 tgcggtggtg gagttcgtgc tcgccgcgat cgcgctgatc ccgctgctct acctcgcgcg
      541 cgtcggcatc cacgcctggc tcggacacga ccgcgcgcac gcgctgcgcg aacaggcggc
      601 ggcggacgcg gcctgacgac ccgcggcgcg gccggttccg cgccgcctat cgcgccatcg
      661 cgtcggcgcc cggcggctgc agcgcaagca cctggccggg acgcgcgacg cggtggccgc
      721 gcgcggacag ggcctccgcc tcggccgcgc tcgcgaagtg gtagagcacg cagcgcgcca
      781 gcagttcgcg cgggtattcg cgctcgaggt cgtcgatgcc gctgtgcgag ggattgccgt
      841 gcagggcgca gtcgtgcgcg accagttcgc cggcgtcggc atacctggcc agcatttccg
      901 ggatcggccg ggtgtcgccc gtccacacca ggctgcccgg caggcgcagt ccgaaggcgg
      961 tatccggcca gtggtggcgc acggggaaca cctccacgcg cacgccgtgc agccagaaat
     1021 ggtcgccgac cgggaccagc tggaacgcat cccagaaatt cgcgccgccc tcggccgcga
     1081 cgttgggata gctggccacc cgctgctgca gcaacggcac cagcggcgcg ggcacgaaca
     1141 gccgggtcaa acgctgccgc ccgccgaaat agttcgcgcc gaacaggcgc tcgaagccgg
     1201 cgatgtggtc gaagtgcgca tgggtcagga acagcgcgtc cggatatgcg ccgtactgct
     1261 gcagccacgc ggtgaggcct tcggcgccgc agtcgatcgc gagccacggc gcgccgtcgc
     1321 gctcgatcgc cgccatcgcc gacccgaggc cgaccgcgct ggagttgccg acgccgatga
     1381 agcgcagctg ccaggacata tcagtaaccc cgctgccagg tcgcgtcgta ggcgccgcgc
     1441 aggcgtgcga agtcgtgctt gacctccatc gccggccgtt cgccgcgcac cttgagcagc
     1501 gagcgcttca gccgcgcgag gttgcgctcg cgccagccgg tggcgggaat gcgcaggcgg
     1561 cccttgtcga aatcgatcag ccagccctgg ccggtcgcgt cgaacaggat gttgtgcgcg
     1621 ttgaggtcgg catggtcgag gccggcccgg tggaagcgcg cgaccagccg gccggtttcc
     1681 tcccacgggg cgtcgtggcc cgcgaccgcg gcgcgctcgg ccagcgaatg cacgccgggc
     1741 aggcgctcga tcaggatcgc ggcacgatag ccggcgccct tgcgccagta gcaggcggcg
     1801 accgggcgcg gcaccggcag cccgcgctgg tggagcaacc gcgccaggcg gaactcggca
     1861 aagctgcgcg cgcggccggg accgtgccag atgtagccat cgcg
//
LOCUS       DATIQC010000077         4292 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_40338, whole genome shotgun sequence.
ACCESSION   DATIQC010000077 DATIQC010000000
VERSION     DATIQC010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4292
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40338"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1105
                     /locus_tag="VLM17_01665"
     CDS             <1..1105
                     /locus_tag="VLM17_01665"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR64295.1"
                     /translation="YAGAAIARARDELSQAQAAMARNRDDDARALANAAAADADFAYA
                     GSHAAATVAEYRQREAEVAALQQRLQVQGQSPDDGLARELDAAASAADGGAMPTDATA
                     LGTRLRALDADARLGGLAAYERFRAQQAVDALAGARGKARDALAPLAARRVATAELAA
                     RTESLARQLDVLEHARGDLLVEASRQEADRARQEAERLRLQAQVQAEEAQRLQAAADA
                     EAAARQQAEAVISDVAGSQQAKLDAARDREATLARKEAELTAGAKLPPVRTGADGEVF
                     TLGGGAFAAGKATLSAGAEDNLRALAAYLQQAPGARVRIDAYAASASLARKRAEAVRG
                     ALARAGVARARQQLAGHGGSAATGRVELLVTGK"
     gene            1426..1644
                     /locus_tag="VLM17_01670"
     CDS             1426..1644
                     /locus_tag="VLM17_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HSR64296.1"
                     /translation="MFEGQPQAELDALMQANPEFRQLYQRHKDLDKRVLDAELGVLAI
                     DDFTLTRMKREKLAAKDRLADLYDRIQH"
     gene            1817..3187
                     /locus_tag="VLM17_01675"
     CDS             1817..3187
                     /locus_tag="VLM17_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSR64297.1"
                     /translation="MRIHQSVLELVGDTPIIQAQRLDTGLCTLYLKLESQNPGGSIKD
                     RIGLSMIEAAEKRGDIRPGDTLVEGTAGNTGIGLALVAQQKGYKLILVVPDKMSREKI
                     FNLKAMGAQVVLTRSDVAKGHPDYYQDMAERIARETPGAYFINQFGNPDNPAAHEFGT
                     GPEILEQLDGDLDAIVFGCGSSGTMTGLSRCFAKLSPKTELVLADPVGSILAEYINEG
                     TLSEKSASWMVEGIGEDFLPSISDFSRVKQAYAITDKESFLTARELLEKEGILGGSST
                     GTLLAAALKYCRAQATPKKVLVFVCDTGNKYLSKMYNDYWMLDNGFLERQQHGDLRNL
                     ILRPYSQRDTVVVGPNDLLVTAYQRMKLYDVSQLPVMDGEKIVGIVDESDVLLHVYGD
                     EARFRDPVATAMVSKLDLVDVKSPVEALLPVFDRGHVAIVMDGGRFLGLITRIDLLNW
                     LRRRVQ"
     gene            3279..>4292
                     /locus_tag="VLM17_01680"
     CDS             3279..>4292
                     /locus_tag="VLM17_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR64298.1"
                     /translation="MTQARDDWGLGTRAIHAGQSPDPSTGAVMPPIYATSTYAQSSPG
                     VHQGFEYSRTHNPTRFAYERCIAGLEGGTRGFAFASGLAATSTALELLDSGDHVVAMD
                     DLYGGSYRLFERVRRRSAGLDFSFVDLTDAAAFEAAIRPDTKLVWIETPTNPLLKIVD
                     IAAISAIAKRHGLLVAVDNTFASPAVQRPLESGADLVMHSATKYLNGHSDMVGGMAVV
                     GDDAELAEQMAFLQNSVGAVQGPFDSFLALRGLKTLHLRMKAHCENALALAEWLQTHP
                     GVEQVIYPGLKTHPHHALAARQMDGFGGIVSVRIKGGYAGAQRFCERTELFTLAESLG
                     GVES"
BASE COUNT          686 a         1601 c         1458 g          547 t
ORIGIN      
        1 gtacgccggc gccgcgatcg cgcgcgcgcg cgacgagctc agccaggcgc aggcggcgat
       61 ggcgcgcaac cgcgacgacg acgcgcgcgc gctcgccaac gcggcggcgg ccgatgccga
      121 cttcgcctac gccggcagcc acgccgcggc gaccgtggcc gagtaccgcc agcgcgaagc
      181 cgaggtggcg gcgctgcagc agcgcctgca ggtgcagggc cagtcgcccg acgacggcct
      241 cgcccgggaa ctggacgccg ccgcgtcggc ggccgacggc ggggcgatgc cgacggatgc
      301 caccgcgctc ggcacccggc tgcgcgccct cgacgccgac gcgcgcctgg gcggcctcgc
      361 cgcctacgaa cgtttccgcg cccagcaggc ggtggatgcc ctggccggcg cgcgcggcaa
      421 ggcccgcgac gcgctggcgc cgctcgccgc gcgccgggtc gccaccgcgg agctcgccgc
      481 gcgcaccgag tcgctggcac gccagctcga cgtgctcgag cacgcccgcg gcgacctgct
      541 ggtcgaagcc agccggcagg aggccgatcg cgcccgccag gaagccgagc gcctgcgcct
      601 gcaggcccag gtgcaggccg aggaagccca gcgcctgcag gccgcggccg acgccgaggc
      661 cgccgcgcgt cagcaggccg aggcggtgat cagcgacgtc gccggcagcc agcaggccaa
      721 gctcgacgcc gcccgcgacc gggaagcgac gctcgcccgc aaggaagccg aactcaccgc
      781 gggcgccaaa ctgccgccgg tgcgcaccgg cgcggacggc gaagtcttca ccctcggcgg
      841 cggcgccttc gccgccggca aggcgaccct ctcggccggc gccgaggaca acctgcgcgc
      901 gcttgccgcc tacctgcagc aggcgcccgg cgcgcgggtg cggatcgatg cctacgcggc
      961 cagtgccagc ctggcccgga agcgcgccga ggcggtccgc ggcgcgctcg ccagggccgg
     1021 cgtcgcgcgc gcccggcagc agctcgcggg ccacggcgga agtgcggcga caggtcgcgt
     1081 ggaactgctg gtcaccggca aataagcttt ttggatcaag tagttaattg agcgtgacag
     1141 cggccgcgcg cggccggccg ccacccatcg gcggcctgcc gcgcgggcct tgccgggcgt
     1201 cggggggagg agtagggtcg aactcaccgg gcaggcgcca tcgccttccc ggccagcgag
     1261 ccaagcccga tgaccgacgc ccccgtccca tccgagtccg ccgccgtgcg ccccgcgcgc
     1321 gcggtgggcc ggaagcccga agcgccgcgc gcctggccga agtcccacat gcaacgcccc
     1381 gtgcctgatg gccggggcgt tgtcgtttgc accgaggagg attccatgtt cgaagggcaa
     1441 ccacaggcgg aactggacgc gctgatgcag gccaaccccg agttccggca gctctaccag
     1501 cgccacaagg acctcgacaa gcgggtgctg gatgccgaac tcggcgtgct cgccatcgac
     1561 gacttcacgc tgacccggat gaagcgcgag aaactcgccg ccaaggaccg cctcgcggac
     1621 ctctacgacc ggatccagca ctgaccgccc gccttgcgca cgggcggcgg cggcctcctc
     1681 gtcggccgtc gccgcccgtg gttgcaagcc caccggaccc gcgccccgcg cgggtcttct
     1741 tttttgcgcg cctgacttcc ccgcggcgag cgccgataat ccgggacccg gccccgagcg
     1801 gcccgcgagc cttcgcatgc gcatccacca atccgtcctc gaactggtcg gcgacacccc
     1861 gatcatccag gcccagcgcc tcgacaccgg cctgtgcacg ctgtacctca agctcgagag
     1921 ccagaacccg ggcggctcga tcaaggaccg catcggcctg tcgatgatcg aggcggcgga
     1981 gaagcgcggc gacatcaggc cgggcgacac gctggtcgaa ggcaccgccg gcaacaccgg
     2041 gatcggcctc gcgctggtcg cgcagcagaa gggctacaag ctcatcctcg tcgtgcccga
     2101 caagatgagc cgcgagaaga tcttcaacct caaggcgatg ggcgcgcagg tcgtgctcac
     2161 gcgctcggat gtcgccaagg gccatccgga ctactaccag gacatggccg agcgcatcgc
     2221 gcgcgagacc cccggcgcct acttcatcaa ccagttcggc aacccggaca atccggcggc
     2281 gcacgagttc ggcaccggcc cggaaatcct cgagcaactg gacggcgacc tcgacgcgat
     2341 cgtgttcggc tgcggcagct ccggcaccat gacgggcctg tcgcgctgct tcgcgaaact
     2401 ctcgccgaag accgagctgg tcctcgccga tccggtcggt tcgatcctcg ccgagtacat
     2461 caacgagggc acgctcagcg agaagtcggc gagctggatg gtcgagggca tcggcgagga
     2521 cttcctgccg tcgatctcgg atttctcgcg ggtgaagcag gcctacgcga tcaccgacaa
     2581 ggaaagcttc ctcaccgcgc gcgagctgct cgagaaggag ggcatcctgg gcggctcctc
     2641 gaccggcacc ctgctcgccg ccgcgttgaa gtactgccgc gcgcaggcca cgccgaagaa
     2701 ggtgctggtg ttcgtctgcg acaccggcaa caagtacctg tcgaagatgt acaacgacta
     2761 ctggatgctg gacaacggct tcctcgagcg ccagcagcat ggcgacctgc gcaacctgat
     2821 cctgcgcccg tactcgcagc gcgacaccgt ggtcgtcggc ccgaacgacc tgctggtcac
     2881 cgcctaccag cgcatgaagc tgtacgacgt ctcccagctg ccggtgatgg acggcgagaa
     2941 gatcgtcggc atcgtcgacg agagcgacgt gctgctgcac gtgtacggcg acgaggcgcg
     3001 cttccgcgac ccggtggcga cggcgatggt gagcaagctc gacctggtcg acgtcaagtc
     3061 gccggtcgag gcgctgctgc cggtgttcga ccgcggccac gtcgccatcg tcatggacgg
     3121 cggccgcttc ctcgggctga tcacccgcat cgacctgctc aactggctgc gccggcgcgt
     3181 gcagtagcag cgcgcccccg aaccagcccg accgatggat gaatgggcat gacagccccg
     3241 gtgctacgat tcccgcctgt tttcatggat gcagagcaat gacgcaagcg cgcgacgact
     3301 ggggcctcgg cacccgtgcg atccacgccg ggcagtcgcc cgacccgagc accggcgcgg
     3361 tgatgccgcc gatctacgcg acatcgacct acgcgcagtc gagccccggc gtgcaccagg
     3421 gcttcgagta ctcgcgcacg cacaacccga cgcgcttcgc ctacgagcgc tgcatcgcgg
     3481 gcctggaggg cggcacgcgc ggcttcgcgt tcgcctccgg cctcgccgcg acctcgacgg
     3541 cgctggaact gctcgacagc ggcgaccacg tggtcgcgat ggacgacctg tacggcggca
     3601 gctaccgcct gttcgaacgc gtgcgccggc gcagcgcggg gctggacttc agcttcgtcg
     3661 acctgaccga cgcggccgcg ttcgaggcgg cgatccggcc ggacaccaaa ctggtctgga
     3721 tcgagacgcc gaccaacccg ctcctcaaga tcgtcgacat cgccgcgatc agcgcgatcg
     3781 cgaagcggca cggcctgctg gtcgcggtcg acaacacctt cgcctcgccg gcggtgcagc
     3841 ggccgctcga atccggtgcc gacctcgtca tgcattcggc gaccaagtac ctcaacggcc
     3901 actccgacat ggtcggcggc atggcggtgg tcggcgacga cgccgaactc gccgagcaga
     3961 tggccttcct gcagaactcc gtcggtgccg tgcagggccc gttcgacagc ttcctcgcct
     4021 tgcgcggcct gaagaccctg cacctgcgca tgaaggccca ctgcgagaac gccctcgcgc
     4081 tggccgaatg gctgcagacc catcccggcg tcgagcaggt catctacccc ggcctgaaga
     4141 cccacccgca ccacgcgctc gccgcgcggc agatggacgg cttcggcggc atcgtctcgg
     4201 tgcgcatcaa gggcggctac gccggcgccc agcgcttctg cgaacgcacc gagctgttca
     4261 ccctcgccga atccctcggc ggcgtcgaaa gc
//
LOCUS       DATIQC010000078         3690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_287863, whole genome shotgun sequence.
ACCESSION   DATIQC010000078 DATIQC010000000
VERSION     DATIQC010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3690
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287863"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..487
                     /locus_tag="VLM17_01685"
     CDS             <1..487
                     /locus_tag="VLM17_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014162053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="halogenase"
                     /protein_id="HSR64299.1"
                     /translation="LFGDALVMPVKIIWDYTFYWALLAPLFFAGKLTDLGLLGRLRPQ
                     FADAATMNLAMQALLRDWGERNAGPLRPDGRLLDQYCIDWFKEMNRALRDPLDDAALF
                     ARLCANVGRMRWLAAEILSRARAAHPDIDDRGLDALLAGHAPPASLSAAWYADAEAEP
                     A"
     gene            complement(511..963)
                     /locus_tag="VLM17_01690"
     CDS             complement(511..963)
                     /locus_tag="VLM17_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003471135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64300.1"
                     /translation="MNTLSRPLLLLLAGLVLAGCASTSKVMLGHARAPIAPAQVRVYN
                     QPPPKYHEIALLETQSGSFTYGEQNKMNAVLEHLRQAAADLGANGVLLQEQGNEPRGG
                     GVGVGIGGGHFGGHTGVSGGVGVDISPAQKHARAIAIYVEPGEEPATP"
     gene            complement(1050..1661)
                     /locus_tag="VLM17_01695"
     CDS             complement(1050..1661)
                     /locus_tag="VLM17_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64301.1"
                     /translation="MRHWIVPALAGLLLVSTVGAARADGSVVSYIEPKNATNPPPARA
                     FNQFQRFEVRPITMDAPYAGQAPNEEAKASIQANLDQRLGPVLAEWNAKAAGDAPHTL
                     LIEPRIEHVKFISGGKRFWAGAFAGGSAVLMTVKLTDAGTGEVIGQPEFYQHANKMGA
                     AWSFGATDKAMLVRIAGMIANYMQANYANPVASSTTEAGEVKF"
     gene            complement(1685..2419)
                     /gene="fabG"
                     /locus_tag="VLM17_01700"
     CDS             complement(1685..2419)
                     /gene="fabG"
                     /locus_tag="VLM17_01700"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HSR64302.1"
                     /translation="MTLPQPRRALVTGGSGDIGGAICRQLAAAGLHVIVHANGNLGRA
                     QAVVDAIGGDGGSAQAVAFDVADGAATRAAIDGLLADGPVQVVVNNAGIHDDAPLAGM
                     SEAQWKRVVDVSLHGFFHVTQPLLLPMARTRWGRVVSVSSVAAVLGNRGQANYAAAKA
                     ALHGATKSLAREMASRGITANVVAPGVIQGRMADAAFPPELVKQMVPAGRPGTPEEVA
                     ALVGFLCSEAAGYVNGQVIGIDGGMS"
     gene            complement(2470..2913)
                     /locus_tag="VLM17_01705"
     CDS             complement(2470..2913)
                     /locus_tag="VLM17_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016850216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HSR64303.1"
                     /translation="MIGRADILALVPHQGAMCLWDEVLAWDAQSIRLHARNHRDPAHP
                     LRSGGRLHALHLCEYGAQAMAVHGGLLARAAGGRAAPGLLVALRGVALHVARIDDLAD
                     AIECEAQALVAGEGGQQYAFRITHAGTLLAEGRAAVMLGTPPAPG"
     gene            complement(2910..>3690)
                     /locus_tag="VLM17_01710"
     CDS             complement(2910..>3690)
                     /locus_tag="VLM17_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64304.1"
                     /translation="QRARQARLPDAATLQAELASAVAASPFRADAFAPFLAEVAEAKQ
                     APPLAVRDLDGTPLAASTGGLLLARGDHATALVSLSGITDVAAVSRVARAQGAQLLDL
                     KDASETLVGAYRERVLLALALAALLLVATVWGALRSPRRVLRVLAPMALTTLLILAAL
                     RGVGVELTLFHLVALILAAGLGLDYALFFEHAGDDHAEQLRTLHAVIVCSITTLLVFF
                     LLALSTIPVLRAIGSTVAIGVVSNFLLALLIAREPGARAAA"
BASE COUNT          481 a         1359 c         1338 g          512 t
ORIGIN      
        1 gctgttcggc gacgcactgg tgatgccggt caagatcatc tgggactaca ccttctactg
       61 ggcgttgctg gcgccgctgt tcttcgccgg caagctcacc gacctcggcc tgctcggccg
      121 cctgcgcccg cagttcgccg atgccgcgac gatgaacctc gccatgcagg cgctgctgcg
      181 cgactggggc gagcgcaacg ccggcccgct gcgacccgac ggccgcctgc tcgaccagta
      241 ctgcatcgac tggttcaagg aaatgaaccg ggcgctgcgc gacccgctgg acgatgccgc
      301 gttgtttgcg cgcctgtgcg cgaacgtcgg ccgcatgcgc tggctcgccg ccgaaatcct
      361 gtcgcgcgcg cgcgccgcgc atccggacat cgacgatcgc ggcctcgacg cgctgctcgc
      421 cggccacgcg ccaccggcgt cgctgtcggc ggcgtggtac gcggacgcgg aagccgaacc
      481 ggcctgagcg gccggctcga tgacgacccg ctacggcgtg gccggctcct cgccgggctc
      541 gacgtagatc gcgatcgccc gcgcatgctt ctgcgccggg ctgatgtcga cgccgacccc
      601 gccgctcacg ccggtgtggc cgccgaagtg gccgccgccg atgccgacgc cgacgccgcc
      661 gccgcgcggt tcgttgccct gctcctgcag cagcacgccg ttcgcgccga ggtcggccgc
      721 cgcctggcgc aggtgctcga gcacggcgtt catcttgttc tgctcgccgt aggtgaacga
      781 gccgctctgc gtctccagca gcgcgatctc gtggtacttc ggcggcggct ggttgtagac
      841 gcgcacctgc gccggcgcga tcggcgcgcg cgcgtggccg agcatgacct tcgaggtgct
      901 ggcgcagccg gcgagcacca ggcccgccag caggagaagc aggggtcgcg acaacgtgtt
      961 catgggcagt cctccggcgc tcgtccgagg atacgcagtg gcctggaacc gggcgtgacc
     1021 ggggacggca tggccgtccc cgccaccggt cagaacttca cctcgcccgc ctcggtggtc
     1081 gaactggcga ccgggttggc gtagttggcc tgcatgtagt tggcgatcat gccggcgatg
     1141 cgcaccagca tcgccttgtc cgtcgcaccg aacgaccagg cggcgcccat cttgttggcg
     1201 tgctggtaga actcgggttg gccgatcact tcgcccgtgc ccgcgtcggt cagcttgacc
     1261 gtcatcagca cggcggagcc gcccgcgaac gcacccgccc agaagcgctt gccgccggag
     1321 atgaacttga cgtgctcgat gcgcggctcg atcagcaggg tgtgcggcgc gtcgccggcg
     1381 gccttggcgt tccactcggc gagcaccgga cccaggcgct ggtcgagatt ggcctggatc
     1441 gaggccttgg cttcctcgtt gggcgcctgc ccggcgtagg gggcgtccat ggtgatcggc
     1501 cgcacctcga agcgctggaa ctggttgaac gccctggccg gcggcgggtt ggtcgcgttc
     1561 ttcggttcga tgtagctcac cacgctgccg tccgcgcggg ccgcgcccac ggtcgacacc
     1621 agcaacagcc cggccagcgc cggcacgatc caatgacgca tggttctctc ccccgtgtgg
     1681 ttgttcagct catcccgccg tcgatcccga tcacctggcc gttgacgtag ccggcagcct
     1741 cgctgcacag gaagcctacc agcgcggcga cttcctccgg cgtgcccggg cgcccggccg
     1801 gcaccatctg cttcaccagt tccggcggga acgcggcgtc ggccatgcgg ccctggatca
     1861 cgccgggcgc gacgacattc gcggtgatgc cgcgcgaggc catctcgcgc gcgagcgact
     1921 tggtcgcgcc gtgcagcgcg gccttggcgg cggcgtagtt ggcctggccg cggttgccga
     1981 gcaccgccgc cacgctcgag acgctcacca cccggcccca gcgggtgcgt gccatcggca
     2041 gcagcagcgg ctgggtgacg tggaagaacc cgtgcagcga cacgtcgacc acgcgcttcc
     2101 actgcgcctc gctcatgccg gccagcggcg catcgtcgtg gatgccggcg ttgttgacga
     2161 ccacctggac cgggccgtcg gcgagcagcc cgtcgatcgc cgcgcgcgtg gcggcgccgt
     2221 cggcgacgtc gaacgcgacc gcctgcgcgc tgcccccgtc cccgccgatc gcatcgacga
     2281 ccgcctgcgc gcggccgagg ttgccgttgg cgtgcacgat gacgtgcagg ccggcggccg
     2341 cgagctggcg gcagatcgca ccgccgatgt cgccgctgcc accggtgacg agggcgcggc
     2401 ggggctgggg cagggtcatg tcgcgttcct tgctggttgg aaagccgtcc ttcgcacgtc
     2461 ggcgcccggt cagcccggcg ccggtggcgt gccgagcatc accgccgccc ggccttccgc
     2521 cagcagcgtg ccggcatggg tgatgcggaa cgcgtactgc tggccgccct cgccggccac
     2581 cagcgcctgc gcctcgcatt cgatcgcgtc ggccaggtcg tcgatgcgcg cgacgtgcag
     2641 ggcgacgccg cgcagcgcga ccagcaggcc cggggcggcg cggccgccgg ccgcgcgcgc
     2701 gagcagtccg ccatgcacgg ccatcgcctg cgcgccgtat tcgcacaggt gcagcgcgtg
     2761 cagccggccg ccgctgcgca gcgggtgcgc ggggtcgcga tggttgcgcg catgcagccg
     2821 gatcgactgc gcgtcccacg ccagcacttc gtcccacagg cacatcgcgc cctggtgcgg
     2881 gaccagcgcg aggatgtcgg cgcggccgat cacgccgcgg cccgcgcgcc cggctcgcgc
     2941 gcgatcagca acgcgagcag gaagttggac acgacgccga tcgccaccgt gctgccgatc
     3001 gcgcgcagca ccgggatcgt cgacagcgcg agcaggaaga acaccagcag ggtggtgatg
     3061 ctgcacacga tcaccgcgtg cagggtgcgc agctgttcgg cgtggtcgtc gccggcgtgc
     3121 tcgaagaaca gcgcgtagtc caggccgagg ccggcggcga ggatcagcgc gaccaggtgg
     3181 aacagggtca gctcgacgcc gacgccgcgc agcgcggcga ggatcagcag cgtggtcagc
     3241 gccatcggcg ccagcacgcg cagcacccgg cggggcgatc gcagcgcgcc ccacaccgtc
     3301 gccaccagca gcagcgcggc gagcgccagc gccagcagca cgcgctcgcg gtaggcgccg
     3361 accagcgtct ccgaggcgtc cttgaggtcg agcagctgcg cgccctgcgc ccgggcgacg
     3421 cgcgacacgg ccgcgacgtc ggtgatcccg ctcagcgaca ccagcgcggt ggcgtggtcg
     3481 ccgcgcgcca gcagcaggcc gccggtgctg gcggcgagcg gcgtgccgtc gaggtcgcgc
     3541 accgccagcg gcggtgcctg tttcgcctcg gcgacctcgg cgaggaacgg cgcgaaggcg
     3601 tcggcgcgga acggcgacgc ggcgacggcg gacgcgagtt cggcctgcag cgtcgccgca
     3661 tccggcagcc gcgcctggcg cgcgcgctgg
//
LOCUS       DATIQC010000079         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_641086, whole genome shotgun sequence.
ACCESSION   DATIQC010000079 DATIQC010000000
VERSION     DATIQC010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641086"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VLM17_01715"
     CDS             <1..421
                     /locus_tag="VLM17_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HSR64305.1"
                     /translation="IAQARRAAERARLPGVRFDVVDLASGHPPHQGSVAVLDVLQYLD
                     ADAQRRLLDAATGMLVPGGRLVIRSGLDDGGARIRTTGAFDRFANRLGWMKTAPQRYP
                     REDELRAALERAGLRSRFRPLRGNLPFNNFLVVAERG"
     gene            complement(423..1847)
                     /locus_tag="VLM17_01720"
     CDS             complement(423..1847)
                     /locus_tag="VLM17_01720"
                     /EC_number="1.2.1.68"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009612056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050269 - coniferyl-aldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006081 - cellular aldehyde metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coniferyl aldehyde dehydrogenase"
                     /protein_id="HSR64306.1"
                     /translation="MHGTPDATPAAELRPTLDRLRHAWQAQRPPVAQRRDDLRRLRDA
                     FRAGVPAMDAAIRADFGHRSTHENLISEAMVVLAEIGHVLRHLDGWARPRRVGVGWRF
                     WPARAQVRPLPVGVVGIISPWNYPVNLALVPLVSAIAAGNHAFLKPSEHTPRTSEWLR
                     ALLAGVFPADRVAVALGGAEVGAAFAALPFDHLLFTGSTATGRKVLAAAAPNLTPVTL
                     ELGGKAPAIVAPDFPIATAAARIATGKWFNAGQTCIGVDYALVDAPRRDAFVEAMRGV
                     VRARYGGLADADDYTRIVNDAQYARLAGYLDDARARGCTVLPLVDVDAGRARRERLLP
                     PTLVLDPADDSALMQHEIFGPILPVKAYRALDEAIAYVATHEPPLALYPFSHDDATVE
                     RILARTMAGGVTVNDTLWHFGVQALPFGGIGPSGMGALHGKAGFDTFSKQVPVLRQAR
                     WAATDALAPPYRGRVDRLIRWLAR"
     gene            1885..>2144
                     /locus_tag="VLM17_01725"
     CDS             1885..>2144
                     /locus_tag="VLM17_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003480461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HSR64307.1"
                     /translation="MSLRPYLGTLPTLGERVYLDPACTVIGDVVLGQDVSVWPNTVIR
                     GDVNFIRIGDRSNLQDGTVVHVSHDGPHARLGGFATRIGSDVT"
BASE COUNT          288 a          793 c          796 g          267 t
ORIGIN      
        1 gatcgcccag gcgcggcgcg cggcggaacg cgcgcggctg cccggcgtgc gcttcgacgt
       61 ggtcgacctc gcgtcgggcc atcccccgca ccagggcagc gtcgccgtgc tcgacgtgct
      121 gcagtacctg gacgccgacg cgcagcggcg cctgctcgac gccgcgaccg gcatgctcgt
      181 gccgggcggc cggctggtga tccgcagcgg cctcgacgac ggcggcgcgc gcatccgcac
      241 caccggcgcg ttcgaccgct tcgccaaccg gctcggctgg atgaagaccg cgccgcagcg
      301 ctatccgcgc gaggacgaac tgcgcgccgc gctcgagcgc gcaggcctgc gcagccgttt
      361 ccgcccgctg cgcggcaacc tgccgttcaa caacttcctg gtcgtcgccg aacgcggctg
      421 agtcagcgcg ccagccagcg gatcagccgg tcgacccggc cgcggtaagg cggcgcgagc
      481 gcgtccgtcg ccgcccagcg cgcctgtcgc agcaccggca cctgcttgct gaaggtgtcg
      541 aagccggcct tgccgtgcag cgcgcccatg ccgctcgggc cgatcccgcc gaacggcagc
      601 gcctgcacgc cgaaatgcca cagggtgtcg ttgacggtga cgccgccggc catggtgcgg
      661 gcgaggatgc gctcgaccgt ggcgtcgtcg tgcgagaacg gatacagcgc cagcggcggc
      721 tcgtgcgtgg ccacgtaggc gatcgcctcg tcgagcgcgc ggtaggcctt caccggcagg
      781 atcgggccga agatctcgtg ctgcatcagc gcgctgtcgt cggccgggtc gaggaccagc
      841 gtgggcggca gcaggcgctc gcggcgcgcg cgtccggcat cgacgtccac cagcggcagc
      901 accgtgcagc cgcgggcgcg cgcatcgtcg aggtagccgg ccaggcgcgc gtactgggca
      961 tcgttgacga tccgggtgta gtcgtcggca tcggccagtc cgccgtagcg ggcgcgcacc
     1021 acgccgcgca tcgcctcgac gaaggcgtcg cggcgcggcg catccaccag cgcgtagtcc
     1081 acgccgatgc aggtctggcc ggcgttgaac cacttgccgg tggcgatgcg cgcggcggcg
     1141 gtggcgatgg gaaagtcggg ggcgacgatc gccggcgcct tgccgccgag ctccagcgtg
     1201 accggcgtca ggttcggcgc ggcggcggcg agcaccttgc gcccggtcgc ggtcgagccg
     1261 gtgaacagca ggtggtcgaa cggcagcgcc gcgaacgccg cacccacctc cgcgccgccg
     1321 agcgcgaccg ccacgcgatc ggcggggaag actccggcca gcagcgcgcg cagccactcg
     1381 gaggtgcgcg gcgtgtgctc ggagggcttc aggaaggcgt ggttgccggc ggcgatcgcc
     1441 gacaccagcg gcaccagcgc gaggttcacc gggtaattcc acggactgat gatgccgacc
     1501 acgccgaccg gcagcggccg cacctgcgcg cgcgccggcc agaacctcca gcccacgccg
     1561 acgcggcgtg gccgtgccca gccatcgagg tggcgcagca cgtggccgat ctcggccagc
     1621 accaccatcg cctcggagat caggttctcg tgggtggagc gatggccgaa gtcggcgcgg
     1681 atcgccgcgt ccatcgccgg cacgcccgcg cggaaggcgt cgcgcagccg ccgcaggtcg
     1741 tcgcggcgct gggcgaccgg cggccgctgc gcctgccacg cgtggcgcag gcggtccagg
     1801 gtcgggcgca gttcggcggc gggcgtggcg tcgggtgtgc cgtgcatcgc ggcagtgtag
     1861 ggggccggcc gcctacaatg ggacatgtcc ctgcgtccct acctcggcac gctgccgacc
     1921 ctcggcgagc gcgtctacct cgaccccgcc tgcaccgtga tcggcgacgt ggtgctcggc
     1981 caagatgtct cggtgtggcc gaacaccgtc atccgcggcg acgtcaactt catccgcatc
     2041 ggcgaccgca gcaacctgca ggacggcacc gtcgtgcacg tctcgcacga cggaccgcac
     2101 gccaggctgg gcggcttcgc cacccgcatc ggcagcgacg tcac
//
LOCUS       DATIQC010000080         3608 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_535124, whole genome shotgun sequence.
ACCESSION   DATIQC010000080 DATIQC010000000
VERSION     DATIQC010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3608
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_535124"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..351
                     /locus_tag="VLM17_01730"
     CDS             67..351
                     /locus_tag="VLM17_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014504739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4031 domain-containing protein"
                     /protein_id="HSR64308.1"
                     /translation="MAVYVDDAVTLWRGHRWAHLMADSLDELHAFAARLGLRREKFQD
                     KTSGAHYDVPAPLREEALRLGAIAISRHRDRARMRAVIANARAQGRRRDA"
     gene            complement(357..1523)
                     /locus_tag="VLM17_01735"
     CDS             complement(357..1523)
                     /locus_tag="VLM17_01735"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HSR64309.1"
                     /translation="MSSSPSETPVALGVDAARHWVWHFAQQNRDYAILLLDSVGNVLW
                     ANTGAAWILDVPAAELVGHNIARYFTEEDVATGIPQLELEGAQAKGSNDDDRWMLRAN
                     GARFWSAGRTAVLQDDTGATLFIKVFRDFTDTKMRIRGLANQAAELAGQNDARANAIS
                     TLAHELRNPLAALSMATEVLQRQAPGADTRPLLELVKRNVAFAARLIQDMDEVLRIEA
                     GKVAIDLEPLLLHEELRTALDTVLHRAERGRRSIELLLPHGDRPIVFEGDRMRVQQVL
                     VNLIGNAIKFTGDQGHVWVTGTTGNRQVVIRIADDGMGIAPDMLEAIFGLLTQAQTPV
                     APAGFGIGLAVVKRIVEMHGGSVQALSAGLGRGSEFIVRLPFRANTGVPRVATG"
     gene            complement(1648..2940)
                     /locus_tag="VLM17_01740"
     CDS             complement(1648..2940)
                     /locus_tag="VLM17_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR64310.1"
                     /translation="MTANELARTIDAVWRMESERVIGGLTRMLRDVGLAEELAQDALV
                     AALETWPQGGVPDNPGAWLMATARHRAIDRLRRHQLLARKHDELGYQAELQQALAEDP
                     AEAADDRIGDDVLRLVFIACHPVLSTEAQVALTLRLLGGLTTDEIARAFLVPEPTVAQ
                     RIVRAKRTLGEAGVPFEVPRGDALAERLAAVLAVIYLIFNEGYAATSGEHWTRPTLCE
                     EALRLGRVLAGLMPGEPEVHGLIALLELQASRLPARIAADGTPILLPEQDRARWDRLL
                     IGRGLAALDRARRLGGDAAVQRPGPYALQAAIAACHAQAPTADATDWARIAALYADLA
                     ARMPSPVVELNRAVAVAMADGPQAGLALVDALRDAPALQRYHLLPSVRGDLLARLGRH
                     GEARVAFEQAAGLARNAREQALLRRRAEDAGRAAARQG"
     gene            complement(3100..3510)
                     /locus_tag="VLM17_01745"
     CDS             complement(3100..3510)
                     /locus_tag="VLM17_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR64311.1"
                     /translation="MQVQPYLFFNGRTEEALEFYRDAIGARTEMLMRNKDAPEPPVGS
                     PPGSGEQVLHAAFRVGESVLLASDGPVPGGFNGFALSLYASDDADAQRKFDALAAGGQ
                     VRMPLSETFFATRFGMLADRFGVAWMVIHPKPMP"
BASE COUNT          479 a         1295 c         1302 g          532 t
ORIGIN      
        1 acctgcgcgg cggcgacgcc gccgcctgag cggatggcgc gcgctgcggc gcgcgccgga
       61 gccacgatgg ccgtctatgt cgacgacgcg gtcacgctct ggcgcggcca ccgctgggcg
      121 cacctgatgg ccgattcgct cgacgagctg catgcgttcg ccgcgcgcct gggcctgcgc
      181 cgggagaagt tccaggacaa gaccagcggc gcgcattacg acgtgccggc gccgctgcgc
      241 gaggaagcct tgcggctggg cgcgatcgcc atttcgcgcc accgcgaccg cgcgcggatg
      301 cgcgcggtga tcgcgaacgc gagggcgcag ggccgccgac gcgacgcctg agccgctcag
      361 ccggtcgcga cgcgcggcac ccccgtgttg gcgcgaaacg gcagccgcac gatgaattcg
      421 ctgccgcggc cgaggccggc gctcagcgcc tgcacgctcc cgccatgcat ctcgacgatg
      481 cgcttgacca cggccaggcc gatgccgaag ccggcgggcg ccaccggtgt ctgcgcctgc
      541 gtgagcagtc cgaagatcgc ctccagcatg tccggcgcga tgcccatgcc gtcgtcggcg
      601 atgcggatca cgacctgccg gttgccggtg gtgccggtga cccagacatg gccctggtcg
      661 ccggtgaact tgatggcatt gccgatcagg ttcaccagca cctgctgcac ccgcatccgg
      721 tcgccttcga acacgatcgg ccggtcgccg tgcggaagca gcagttcgat gctgcgccgg
      781 ccgcgttcgg cgcggtgcag gacggtgtcc agcgcggtcc gcagctcctc gtgcagcagc
      841 agcggctcca ggtcaatcgc caccttgccg gcttcgatcc gcagcacttc gtccatgtct
      901 tggatcaggc gggcggcgaa tgccacgttg cgcttcacga gttccagcaa cggtcgcgta
      961 tcggctcccg gagcctgccg ttgcagcact tccgtggcca tggacaaggc cgccagcggg
     1021 ttgcgcagct cgtgcgcgag ggtcgagatc gcgttggcgc gggcatcgtt ctggcccgcg
     1081 agttccgcgg cctggttggc caggccacgg atgcgcatct tggtatcggt gaagtcgcgg
     1141 aagaccttga tgaacagcgt ggcgccggtg tcgtcctgca acaccgcggt gcggccggcg
     1201 gaccagaaac gcgcgccgtt ggcgcgcagc atccagcggt cgtcgtcgtt ggagcccttg
     1261 gcttgcgccc cctccagctc gagttgcgga atgccggtcg ccacgtcctc ttcggtgaaa
     1321 tatcgcgcga tgttgtgccc gaccagctct gcggccggca cgtcgaggat ccaggccgcg
     1381 ccggtgttcg cccacagcac gttcccgacg ctgtccagca gcaggatggc gtagtcgcgg
     1441 ttctgctgcg cgaaatgcca gacccagtgc ctggcggcat cgacgcccag ggcaaccggt
     1501 gtttcggagg gactcgacga cacgaggggt cctggctgca ggtcggctgc accttcgcgg
     1561 acggcccatg aaagggtcgt ggatgcgggc ggccagactg gacggcaggg cgacggtcgc
     1621 ggtgccccgc cgacgaccgg ccgtggttca gccctggcgg gcggcagcgc gcccggcgtc
     1681 ctcggcccgt cgccgcagca gcgcctgttc ccgcgcgttg cgcgcgaggc cggccgcctg
     1741 ctcgaaggcg acgcgcgctt ccccgtgccg accgaggcgc gcaagcaggt cgccgcgcac
     1801 gctcgggagg aggtggtagc gctgcagcgc gggtgcgtcc cgcagcgcgt ccacgagggc
     1861 gaggcccgcc tgcgggccgt cggccatcgc caccgcgacg gcgcggttga gctcgacgac
     1921 cggcgacggc atccgcgccg cgaggtcggc gtacagcgcg gcgatgcgcg cccagtcggt
     1981 cgcatcggcg gtgggcgcct gcgcgtggca ggccgcgatc gccgcctgca gcgcgtacgg
     2041 tcccggccgc tggacggcag cgtcgccgcc gaggcgtcgt gcgcggtcca gcgcggcgag
     2101 gccgcgaccg atcagcaggc ggtcccagcg tgcgcgatcc tgctcgggca gcaggatggg
     2161 cgtgccgtcg gcggcgatgc gcgcgggcaa ccgcgaggcc tgcagctcca gcagcgcgat
     2221 cagtccatgg acttccggtt cgcccggcat cagcccggcg agcacgcgcc ccagccgcag
     2281 cgcttcctcg cacaacgtcg gccgtgtcca gtgttcgccc gacgtggccg catagccttc
     2341 gttgaagatg aggtagatca ccgcgagcac cgccgcgagc cgttcggcca gcgcgtcgcc
     2401 acgcggcact tcgaacggca cgcccgcctc gcccagcgtg cgcttggcgc gcacgatgcg
     2461 ctgcgccacg gtcggctcgg gcacgaggaa ggcgcgcgcg atctcgtcgg tggtgaggcc
     2521 gccgagcagg cgcagcgtca gcgcgacctg cgcctcggtc gacaggaccg gatggcaggc
     2581 gatgaacacc agccgcagca cgtcgtcgcc gatgcggtcg tcggcggcct ccgcggggtc
     2641 ctccgccagt gcctgctgca gctccgcctg gtagccgagc tcatcgtgct tgcgcgcgag
     2701 cagctggtgg cgtcgcagac ggtcgatggc gcggtgcctg gcggtggcca tcagccaggc
     2761 gccgggattg tccggcacgc cgccctgcgg ccaggtctcg agcgccgcga ccagggcgtc
     2821 ctgcgcgagt tcctcggcga gcccgacgtc gcgcagcatg cgcgtcagcc cgccgatcac
     2881 gcgctccgac tccatgcgcc agaccgcatc gatggtgcgc gccagctcgt tggccgtcat
     2941 ggggagcgat catggggttc gcttccttgc ggatgcaacc gccgccccag cgtcgctggc
     3001 gtgcccgctt tgaccgcgcc ttcgggatcg tcccacggat gcccccgcgt cgcgcgcttg
     3061 ccccgctttc gcgcgtacga cgacaaaccg ccgttcgaat cacggcatcg gcttgggatg
     3121 gatcaccatc catgccacgc cgaagcggtc ggcgagcatg ccgaagcggg tcgcgaagaa
     3181 ggtttccgac agcggcatgc gcacctggcc gccggcggcg agcgcatcga acttgcgctg
     3241 cgcgtcggcg tcgtcgctcg cgtacagcga cagcgcgaag ccgttgaaac cgcccggcac
     3301 cggcccgtcg gacgcgagca gcacgctctc gccgacgcgg aaggcggcat gcagcacctg
     3361 ctcgccgcta cccggcgggc tgccgaccgg cggctccggc gcgtccttgt tgcgcatcag
     3421 catctcggtg cgcgcgccga tcgcgtcgcg gtagaactcc aacgcttcct cggtacggcc
     3481 gttgaagaac aggtagggct ggacttgcat ggtcgtttct ccttcaggcc tgggcggcgg
     3541 gttcggcgcg ccggcgtgct tcctggtcgc gcagcgcggc gttgaattcc tcgccgaagt
     3601 cctcggct
//
LOCUS       DATIQC010000081         2063 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_287959, whole genome shotgun sequence.
ACCESSION   DATIQC010000081 DATIQC010000000
VERSION     DATIQC010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287959"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VLM17_01750"
     CDS             complement(<1..408)
                     /locus_tag="VLM17_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HSR64312.1"
                     /translation="MPLPAARAATREEFASALTHGLGAAAALAGGVVLITFAALFGNG
                     WQLAGAIVFGACLLVLYLASTLYHAIQHPVAKRRLKILDHCAIYLLIAGTYTPFCLVT
                     LRGAWGWSLFGVVWSLAAIGMIQELKTRSQARIL"
     gene            complement(543..>2063)
                     /locus_tag="VLM17_01755"
     CDS             complement(543..>2063)
                     /locus_tag="VLM17_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HSR64313.1"
                     /translation="EKLLLFGGAIQMAGSVKGRKAARHATSDWMALEKERGISVTSSV
                     MQFPYEGRIVNLLDTPGHADFGEDTYRVLTAVDSALMVIDVAKGVEERTIKLMEVCRL
                     RDTPIMTFINKLDREGKNPIDLLDEVESVLGIQCAPVTWPIGMGQRLKGVVHLVTGEV
                     HLYEPGRNFTRQDSTIFASIDDPRLETRIGAQMLAELREELELVQGASHPFDQAAYLA
                     GRQTPVFFGSAVNNFGVQLLLDFFVEHAPEPKPRATTSREVGPYEPHLTGFVFKIQAN
                     MDPQHRDRVAFMRICSGRFDAGMKAFQVRSGKEVKLATALTFMASDREIVETAYPGDV
                     IGIHNHGTISIGDSFSEGEVLSFTGIPNFAPELFRRARLRDPLKLKQLQKGLAQLSEE
                     GATQFFRPLMSNDLILGAVGTLQFDVVAYRLKDEYGVDASFEQVNVVTARWIRCGDAK
                     KLEEFRDKHAMNLALDAAGQLVYLAPTRVNLQLAQERAPGVQFLATREHAQAVALD"
BASE COUNT          314 a          682 c          736 g          331 t
ORIGIN      
        1 gaggatgcgc gcctgcgagc gcgtcttcag ttcctggatc atgccgatcg cggcgaggct
       61 ccagacgacg ccgaacagcg accagcccca ggcgccgcgc agcgtaacga ggcaaaaagg
      121 cgtgtaggtg ccggcgatca acaggtagat cgcgcagtgg tcgaggatct tcagccggcg
      181 cttggccacc gggtgctgga tcgcgtggta gagcgtggac gcgaggtaca gcaccagcag
      241 gcaggcgccg aacacgatcg cgcccgcgag ctgccagccg ttgccgaaca gcgcggcgaa
      301 ggtgatcagc accacgccgc cggcgagcgc ggcggcggcg ccgaggccgt gggtgagggc
      361 gcttgcgaat tcctcgcgcg tggcggcgcg tgctgcaggc aggggcacgg cgggcacggg
      421 tgaagctcct cggggagtcg ccgtactcta gcgtatggat gcacccgtgg atgcaacgcc
      481 tgctcgtccg ggcgccgggc aggcgctcgc acccgccgct ggatccctgc cggcgctctc
      541 actcagtcca gcgccaccgc ctgtgcgtgt tcgcgggtgg cgaggaactg cacgcccggc
      601 gcgcgttcct gcgcgagctg caggttgacc cgggtcggcg ccaggtagac cagctggccc
      661 gccgcgtcca gcgcgaggtt catcgcgtgc ttgtcgcgga actcctcgag cttcttcgcg
      721 tcgccgcagc ggatccagcg cgcggtgacg acgttgacct gctcgaagct ggcgtcgacg
      781 ccgtactcgt ccttcagccg gtacgccacg acgtcgaact gcagcgtgcc gaccgcgccg
      841 aggatcaggt cgttcgacat cagcggacgg aagaactggg tggcgccttc ctccgacagc
      901 tgcgccaggc ccttctgcag ctgcttgagc ttgagcgggt cgcgcagccg cgcgcggcgg
      961 aacagctcgg gcgcgaagtt ggggatgccg gtgaagctca gcacctcgcc ctcgctgaag
     1021 gaatcgccga tcgagatcgt gccgtggttg tggatgccga tcacgtcgcc cggataggcg
     1081 gtctcgacga tctcgcggtc gctggccatg aaggtgagcg cggtggcgag cttgacctcc
     1141 ttgccgctgc gcacctggaa ggccttcatg ccggcgtcga aacggcccga gcagatgcgc
     1201 atgaacgcga cgcggtcgcg gtgctgcggg tccatgttgg cctggatctt gaacacgaag
     1261 ccggtcaggt gcggctcgta ggggccgacc tcgcgcgagg tggtcgcgcg cggcttcggc
     1321 tccggcgcgt gctcgacgaa gaagtcgagc agcagctgca cgccgaagtt gttgaccgcc
     1381 gagccgaaga acaccggcgt ctgccggccc gcgagatacg cggcctggtc gaacgggtgc
     1441 gacgcgccct gcacgagttc cagttcctcg cgcagctcgg ccagcatctg cgcgccgatg
     1501 cgggtttcca gccgcgggtc gtcgatcgac gcgaagatcg tcgaatcctg gcgggtgaag
     1561 ttgcggccgg gttcgtacag gtgaacttcg ccggtgacca ggtgcacgac gcccttcagg
     1621 cgctggccca tgccgatcgg ccaggtcacc ggcgcgcact ggatgccgag cacggattcg
     1681 acctcgtcga gcaggtcgat ggggttcttg ccctcgcggt cgagcttgtt gatgaaggtc
     1741 atgatcggcg tgtcgcgcag gcggcacacc tccatcagct tgatcgtgcg ctcctccacg
     1801 cccttggcga cgtcgatcac catcaacgcc gagtcgaccg cggtcagcac gcggtaggtg
     1861 tcctcgccga agtcggcgtg gcccggcgtg tcgagcaggt tgacgatgcg gccttcgtac
     1921 gggaactgca tcaccgagct ggtcaccgag atgccgcgct ccttctccag cgccatccag
     1981 tcggaggtcg cgtggcgcgc ggccttgcgg cccttgaccg agccggccat ctggatcgcg
     2041 ccgccgaaca gcagcagctt ctc
//
LOCUS       DATIQC010000082         4316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_217094, whole genome shotgun sequence.
ACCESSION   DATIQC010000082 DATIQC010000000
VERSION     DATIQC010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217094"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1312
                     /gene="mutL"
                     /locus_tag="VLM17_01760"
     CDS             <1..1312
                     /gene="mutL"
                     /locus_tag="VLM17_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HSR64314.1"
                     /translation="TELGHIEEWLRSLALARPDVELRVSHNGKPSRRYRASDGTGEGA
                     ARSPERLHETLGEEFARHALRVEHGGAGLRLHGWIGQPAYNRASADQQYLYVNGRSVR
                     DRNVAHAIRQAYSDVLFHGRHPAFVLFLELDPRGVDVNVHPAKHEVRFRDARLVHDFV
                     YRTLQQALAGTRAGQAPHAQQPADGAQAAMARWQPPQAPLGLRVDEVRGAYAALYGAP
                     APSMQHGAAAMPVPPALPANDDATLPPLGNAIAQLHGIYILAESAEGLVVVDMHAAHE
                     RIGYEKLKAAHDGAGVRVQPLLVPQSVAVSEREADVAEREAATLAELGFEVSRGGPQA
                     LLLRGVPAVLAHGDVEALLRDVLADLREHGASRRVAEARDELLATMACHGAVRAHRRL
                     SIPEMNALLREMEATERSGQCNHGRPTWARFSLAEIDRWFLRGR"
     gene            1312..2262
                     /locus_tag="VLM17_01765"
     CDS             1312..2262
                     /locus_tag="VLM17_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012444703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1684 domain-containing protein"
                     /protein_id="HSR64315.1"
                     /translation="MTRSRRAFDRVLLAACAISALAGCGRQPEEKPKMDAAAVAFQHE
                     EDAWRAQRRDTLLKPDGWTSLVGLHWIDPGAHYVGSAPGNGMQLSLGPAHLGMIELRD
                     GAFRFVPDRAAALTLDGQPLTHAATLRTDADKAGPSVLGFDDGKGNATVIERSGRYAL
                     RVRHADAPSRLHFDGIDYWPAERGWKVEGRFLPHPPGRTMEIANIVGSTDAMSNPGVV
                     EFTREGRTYRIEALDEGEGVLFLVFADRTNGQGSYGAGRFLDAPMPDAQGRVVLDFNQ
                     ARNPPCAFTSFATCPLPPPENRLDLAITAGEKAYHKPANG"
     gene            2268..3212
                     /locus_tag="VLM17_01770"
     CDS             2268..3212
                     /locus_tag="VLM17_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006379885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HSR64316.1"
                     /translation="MRPIRLLLPFCAALLAAGLAFAKGPAGAPAAQPPVPLLWKVSDA
                     DNAVYLLGSFHLLRASDYPLSPEVEAAFKDAKTVVFEIAPEEMDSPALGMQMGQAALR
                     TDGSQLDGELPPATRARLAGWVAAHQEALRKSGVPAQALQLFEPWFVGLTVSVVDMAG
                     LGLDPKLGLDRHFATEAKAAGKATAGLETGAQQIAFLDGMDRDEQLQFLAEALDEATD
                     RRDLERLHAAWRRGDAKTLWEGMAADMKRQYPKLYRRIDVDRNDAWVPRIAQRLDAPG
                     RDDTLVVVGALHLLGSDGVVEKLRAKGYRVERICASCR"
     gene            complement(3256..3660)
                     /gene="rnfB"
                     /locus_tag="VLM17_01775"
     CDS             complement(3256..3660)
                     /gene="rnfB"
                     /locus_tag="VLM17_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rnf electron transport complex subunit RnfB"
                     /protein_id="HSR64317.1"
                     /translation="MDPVERLDRLLPQTQCGQCGFAGCRPYAEAMARGEAGPERCPPG
                     GDAGALALARALGVPATPYDRARGPHKPPQVALVVEADCIGCTKCIQACPVDAIVGAA
                     RLMHVVVEPLCTGCELCVPACPVDCIVMVPPG"
     gene            complement(3725..>4316)
                     /gene="metG"
                     /locus_tag="VLM17_01780"
     CDS             complement(3725..>4316)
                     /gene="metG"
                     /locus_tag="VLM17_01780"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012511780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HSR64318.1"
                     /translation="GLAGQAGAFLQAPIARWSDLDAPLLGHRIARYVPLFTRIDPKQI
                     DAMIEASKDTLQPAEPAAAKAATVAAPAASTNAKAEAPAGQAATIGIDDFARLDLRIG
                     KVLACEAVEGSDKLLRFELDAGPLGRRQIFSGIRASYGEPAGLVGRSVVFIANLAPRK
                     MRFGVSEGMILSAGFDGGGLFLLDADDGAQPGMPVK"
BASE COUNT          617 a         1582 c         1562 g          555 t
ORIGIN      
        1 caccgaactc ggccacatcg aggaatggct gcgttcgctg gcgctggcgc gcccggacgt
       61 cgaactgcgc gtgtcgcaca acggcaagcc gtcgcggcgt tatcgcgcat cagacggcac
      121 cggcgaaggc gcggcgcgct cgcccgaacg cctgcacgaa acgctgggcg aggaattcgc
      181 gcggcatgcg ctgcgcgtcg agcacggcgg ggcgggcctg cgcctgcacg gctggatcgg
      241 ccagccggcg tacaaccgcg ccagcgccga ccagcagtac ctgtacgtca acggccgcag
      301 cgtgcgcgac cgcaacgtcg cccacgcgat ccgccaggcc tacagcgacg tgctgttcca
      361 cggccggcac ccggccttcg tgctgttcct cgagctggac ccgcgcggcg tggacgtcaa
      421 cgtgcacccg gccaagcacg aggtgcgttt ccgcgacgcg cgcctcgtgc acgacttcgt
      481 ctatcgcacc ctgcagcagg cgctggccgg aacgcgcgcg gggcaggcac cgcacgcgca
      541 gcagccggcg gacggcgccc aggcggcgat ggcgcgctgg cagcctccgc aggcgccact
      601 ggggctgcgc gtcgacgaag tgcgtggcgc ctacgcggcg ctgtacggcg cgcccgcgcc
      661 gtcgatgcag cacggcgcgg cggcaatgcc ggtgccgccc gcgctgccgg ccaacgacga
      721 cgcgaccctg ccgccgctcg gcaacgccat tgcccagctg cacggcatct acatcctcgc
      781 cgagagcgcc gagggcctcg tggtcgtcga catgcatgcc gcccacgagc gcatcggcta
      841 cgagaagctc aaggccgcgc acgacggcgc gggcgtgcgc gtgcagccgc tgctggtgcc
      901 gcagtcggtc gcggtgtccg aacgcgaggc ggacgtcgcc gagcgcgagg cggcgacgct
      961 ggcggagctt ggtttcgagg tctcgcgcgg cggcccccag gcgctgctgc tgcgcggcgt
     1021 gcccgcggtg ctcgcgcacg gcgacgtcga ggcgctgctg cgcgacgtgc tcgccgacct
     1081 gcgcgagcac ggcgccagcc gccgggtggc cgaggcgcgc gacgaactgc tggcgacgat
     1141 ggcctgccac ggcgcggtgc gcgcgcaccg tcgcctgtcc attcccgaaa tgaatgccct
     1201 gctgcgcgag atggaagcga ccgagcgctc ggggcaatgc aatcatggcc gcccgacctg
     1261 ggcgcgcttc agcctggctg agatcgacag atggttcctg cgaggacgtt gatgacccgg
     1321 tcccgacgtg cgttcgaccg cgtgctgctc gccgcctgcg ccatttccgc gctggccgga
     1381 tgcggccgcc aacccgagga gaagccgaag atggatgccg ccgccgtcgc cttccagcac
     1441 gaggaggacg cctggcgcgc gcagcgccgc gacaccctgc tcaagccgga cggctggacc
     1501 agcctggtcg ggctccactg gatcgatccg ggcgcgcatt acgtcggcag cgcgccgggg
     1561 aacggcatgc agttgtcgct cggccccgcg cacctgggca tgatcgagtt gcgcgacggc
     1621 gcgttccgtt tcgtgcccga cagggccgcg gcactcaccc tcgacggaca gccgctcacg
     1681 cacgcggcga cgctgcgcac cgacgccgac aaggccggcc cgagcgtgct cgggttcgac
     1741 gacggcaagg gcaacgccac ggtgatcgag cgcagcggcc gctacgcgct gcgcgtgcga
     1801 cacgccgatg cgccgtcgcg cctgcatttc gacggcatcg actactggcc ggccgagcgc
     1861 ggctggaaag tcgagggccg cttcctcccg cacccgccgg gccggacgat ggaaatcgcc
     1921 aacatcgtcg gcagcaccga cgcgatgtcg aacccgggcg tggtcgagtt cacccgcgag
     1981 ggcaggacct atcgcatcga ggcgctggac gagggcgagg gcgtgctgtt cctcgtgttc
     2041 gccgaccgca ccaacggcca gggcagttat ggcgccggcc gcttcctcga cgcgccgatg
     2101 cccgacgcgc agggccgcgt cgtgctcgac ttcaaccagg cgcgcaaccc gccgtgtgcg
     2161 ttcaccagct tcgcgacctg cccgctgccg ccgccggaga accggctgga cctcgcgatc
     2221 accgcgggcg agaaggccta ccacaagccg gcgaacggct gaccgcgatg cgcccgatcc
     2281 gcctcctgct gccgttctgc gccgcgctgc tcgccgccgg cctcgccttc gcgaaaggcc
     2341 cggccggggc ccccgccgcg cagccgccgg tgccgctgct gtggaaggtc tccgacgccg
     2401 acaacgcggt gtacctgctc ggctccttcc acctgctgcg tgcgtccgac tacccgctgt
     2461 cgcccgaggt ggaagcggcg ttcaaggacg cgaagacggt ggtgttcgag atcgcgcccg
     2521 aggaaatgga ttcgcccgcc ctcgggatgc agatgggcca ggccgcgctg cgcacggacg
     2581 gcagccagct cgacggcgaa ctgccgccgg cgacgcgcgc caggctggcc ggatgggtcg
     2641 ccgcgcacca ggaggcgttg cggaagagcg gcgtgccggc gcaggcgctg cagctgttcg
     2701 agccgtggtt cgtcggcctg acggtgagcg tcgtcgacat ggccggcctc gggctcgatc
     2761 ccaagctcgg cctcgaccgc catttcgcca ccgaggcgaa ggccgccggc aaggcgaccg
     2821 ccggcctgga gacgggcgcg cagcagatcg ccttcctcga cggcatggac cgcgacgagc
     2881 agctgcaatt cctcgccgaa gcgctggacg aagcgaccga ccggcgcgac ctcgagcgcc
     2941 tgcatgccgc ctggcgccgc ggcgacgcga agacgctgtg ggaaggcatg gcggccgaca
     3001 tgaagcggca gtatccgaag ctctaccggc gcatcgacgt cgaccgcaac gacgcctggg
     3061 ttcccaggat cgcccagcga ctcgacgctc ccgggcgtga cgacaccctc gtcgtggtcg
     3121 gcgcgctgca cctgctcggc agcgatggcg tggtggagaa actgcgcgcg aaggggtaca
     3181 gggtcgagcg catctgcgcg tcctgccgct gaggccgctc cccgcggccg cccccgcggc
     3241 cgcgaagcgt cgcggttacc ccggcggcac catcacgatg cagtcgaccg ggcaggccgg
     3301 cacgcacagc tcgcagccgg tgcacaacgg ttcgaccacc acgtgcatca gcctggcggc
     3361 gccgacgatg gcgtcgaccg ggcaggcctg gatgcacttg gtgcagccga tgcagtcggc
     3421 ttcgaccacc agcgcgacct gcggcggctt gtgcgggccg cgggcgcggt cgtaaggcgt
     3481 cgccggcacg ccgagcgcgc gtgccagcgc cagcgcgccc gcgtcgcccc ccggaggaca
     3541 acgttccggc ccggcttcgc cgcgcgccat cgcctccgca tacggcctgc agccggcgaa
     3601 tccgcactgc ccgcactggg tctgcggcag gaggcgatcg aggcgttcga cggggtccat
     3661 ggcaacggtc acgtccgggt cgaccggcag ctgcgtcgcg ccgcagcgcc cggacggcgc
     3721 gcggttactt caccggcatg ccgggctgcg cgccgtcgtc ggcgtcgagc aggaacagcc
     3781 cgccgccgtc gaagccggcc gacaggatca tgccctcgct cacgccgaag cgcatcttgc
     3841 gcggcgcgag gttggcgatg aacaccacgc tgcggccgac caggcccgcg ggctcgccat
     3901 agctggcgcg gatgccggag aagatctggc gacggccgag cggaccggcg tcgagctcga
     3961 agcgcagcag cttgtcggac ccttccaccg cctcgcacgc gagcaccttg ccgatgcgca
     4021 ggtcgagcct ggcgaagtcg tcgatgccga tggtggctgc ctgcccggca ggcgcctcgg
     4081 ccttcgcgtt cgtggaagcg gcgggagccg cgaccgtcgc agccttcgcg gcggccggtt
     4141 cggcgggctg cagggtgtcc ttgctggctt cgatcatggc gtcgatctgc ttggggtcga
     4201 tccgggtgaa gaggggaacg tagcgagcga tgcggtggcc gagcagcggc gcgtcgaggt
     4261 cgctccaccg cgcgatcggc gcctgcagga acgctccggc ctgccctgca agcccg
//
LOCUS       DATIQC010000083         5385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_499852, whole genome shotgun sequence.
ACCESSION   DATIQC010000083 DATIQC010000000
VERSION     DATIQC010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5385
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499852"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(284..751)
                     /locus_tag="VLM17_01785"
     CDS             complement(284..751)
                     /locus_tag="VLM17_01785"
                     /inference="COORDINATES: protein motif:HMM:NF015999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HSR64319.1"
                     /translation="MLCPRLHHFLDDAHAPYTALEHPRTVTAEETAHVTRIGNRHFAK
                     TVMLKVDGRLAMLVMPAAYRVDLTRLSRALGGPLVELAEEPEFRSAFPDCEIGAMPPF
                     GHLYGMPVYVDARLADEPEIAFNAGSHTDVVRMSYAEFERLAQPELLWLAHVM"
     gene            complement(908..1636)
                     /locus_tag="VLM17_01790"
     CDS             complement(908..1636)
                     /locus_tag="VLM17_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64320.1"
                     /translation="MQAPLLAGVLAAGLLAGCQRHDAQADAAAAAAQAAAREEAARPI
                     EAAFNEALAAQNWIAAKAQADVLFAQYPQSQAAARVRPHYEAVTARAEAAREQGRLAN
                     LWSYDKTPVQGGTQLSASIYAKDDLDTDGSGAKPVRLIFRDHPSWGTSSYLVLQAGDF
                     ACYGGCRVKVQVDDQPAQPMAASRPKTDEAIAMFVEDEKALWRKARGAKKTLAITFPV
                     KAGGTRTAVFETAGVDPAQLPRWR"
     gene            complement(1648..3606)
                     /locus_tag="VLM17_01795"
     CDS             complement(1648..3606)
                     /locus_tag="VLM17_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005990279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HSR64321.1"
                     /translation="MSLRVAALMLSAVVLAACSREPSPPAAVAPAVDRKPAVQAVDHD
                     EHSYAEPQKVRITALALDLAVDFARKQLAGTATYTLDWQDPQATELDLDTRDLAIEKV
                     EGAGAAGQWTPLQYALAPRDAILGSRLAIQVPQRNASVRVTYRTSPEASGLQWLEPAM
                     TEGKQQPFMFSQSEAIHARSWVPLQDTPGVRFTYTAHVTAPKDAMVLMSAANDAMDAG
                     GNVPRSGDYRFTMKQPIPSYLLAIAAGDLVFQSTGRRSGVWAEPAMVQKAAKEFEDTE
                     KMIEVAESLYGPYRWERYDLLVLPPSFPFGGMENPRMTFATPTVIVGDKSLVSLVAHE
                     LAHSWSGNLVTNASWKNIWLNEGFTTYVQGRITEALYGVELADMERQIDQQDLARQIA
                     EGEIAPADQVLVLPALTGRDPDDALSDIAYTKGAWFLRFLEQRVGRADFDPFLRGWFD
                     DHAFRSATTGEFVDYLKSHLLAKHPNVVTDAELDAWLHQPGIPAFAERARSRGFSTVD
                     SARIAWLGNGTLPPPAITTAWTTQEWIHFIEGLGDTLQPAQLAQLDAAYHFSGTPNGE
                     LAQRWYPLAVRSGYHAGDAPMAEFLQRVGRRKLIMPTFDALVKTPEGLAFAKEVFAKA
                     KPGYHPITSASVAATIARAELPPPAATP"
     gene            complement(3691..5352)
                     /gene="treF"
                     /locus_tag="VLM17_01800"
     CDS             complement(3691..5352)
                     /gene="treF"
                     /locus_tag="VLM17_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007081414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004555 - alpha,alpha-trehalase activity
                     [Evidence IEA];
                     GO_process: GO:0005991 - trehalose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase TreF"
                     /protein_id="HSR64322.1"
                     /translation="MQHTAADRERPSVGVRQPDALAARADEGPRPDPLSPADRYQELF
                     ADVQRARVFADSKTFVDCAPRGRPDDILAEYRARRATPGFDLVAFVHARFRAERPPDS
                     HYVSDPDQSLVDHIDGLWPVLTRQPREHPPFSTLLPLPEQYVVPGGRFGEMYYWDSYF
                     TMLGLAESGRRDLLVSMADNFAYLVDTCGHIPNGNRSYYLSRSQPPVFSLMVELFEAH
                     ALCRAVSYLPRLKREHAFWMDGADELRRDDADRHVVRLPDGALLNRYWDARDIPREEA
                     WLEDETTARRSRRPAAEVYRELRSAAASGWDFSSRWCDEDGDLATTRTTTILPVDLNA
                     FLFKLEAQIAQLSRVDGDARGADEFGRRARARRAAIDRWLWDERLGAFVDYDRVHDRR
                     RAQASAAIAVPLFVGLATPDQAHRVARALHAHLLEPGGLATSCRATGEQWDQPNGWAP
                     LQWMAISGLRRYGEEALACDISARWLDTVGSLYERESKLVEKYVLEPTPEGAVGGGGG
                     EYPLQDGFGWTNGVTRRLLHQEPDNRNHQARAGRNFVHQRYPGRH"
BASE COUNT          697 a         1853 c         2030 g          805 t
ORIGIN      
        1 gcggctgtcg tcgcgcagcc agtagtactc gtcctcgcgg cgcgcgccgt gcggagcgct
       61 caccgtgtac ggcttcttcg cggcgtcggg cggtgcgggg cgggcgggga cggtgtcggt
      121 catcggcggc gggtcgaggg aaaggacctt catggggctt gcggggaaaa agtgcaaccg
      181 gcgggcgggc cgggcacggg cgttgccggc caggcgcgca accgacgccg cgcctgcgga
      241 tgatccctcc ccccgcgcca tgcgtcgcgc aggcgcacgt cctctacatc acgtgcgcca
      301 gccacagcag ctcgggctgg gcgaggcgct cgaattccgc gtacgacatg cgcaccacgt
      361 cggtgtgcga gccggcgttg aaggcgatct ccggttcgtc ggccaggcgc gcatcgacgt
      421 agaccggcat gccgtagagg tggccgaacg gcggcatcgc gccgatctcg caatccggga
      481 aggcgctgcg gaattccggc tcctccgcca gctccaccag cggcccgccg agcgcgcgcg
      541 acaaccttgt caggtcgacg cgataggccg cgggcatcac cagcatggcc agcctgccgt
      601 cgaccttgag catcaccgtc ttggcgaaat ggcggttgcc gatgcgggtg acgtgggcgg
      661 tttcctccgc ggtcaccgtg cgcggatgct cgagcgcggt gtagggcgcg tgcgcgtcgt
      721 cgaggaagtg gtgcaggcgt gggcacagca tggccggctc cgcaggcgcc gccttcgtcc
      781 gctccggcga acgccacgtg ggctgggcgc gctccatgtc gcgccggcgc cgcgggggcg
      841 gcgtcggcat gaccctagcg cggacggcgt gcaggcatgg tcacggtgcg cttcgaccgc
      901 acgcgcttca gcgccagcgc ggcaactggg ccggatccac gccggcggtc tcgaacaccg
      961 cggtgcgggt gccgccggcc ttgaccggga aggtgatcgc gagcgtcttc ttcgcgccac
     1021 gcgccttgcg ccacaacgcc ttctcgtcct cgacgaacat ggcgatcgcc tcgtcggtct
     1081 tcgggcgcga ggcggccatc ggctgcgcgg gctggtcgtc gacctggacc ttgaccctgc
     1141 agccgccgta gcaggcgaaa tcgccggcct gcagcacgag gtagctgctg gtgccccagg
     1201 agggatggtc gcggaagatc aggcgcacgg gcttggcgcc gctgccgtcg gtgtcgaggt
     1261 cgtccttcgc gtagatcgac gccgacaact gcgtgccgcc ctgcaccggg gtcttgtcgt
     1321 agctccacag gttggccagc cggccctgct cgcgcgcggc ctccgccctg gccgtgaccg
     1381 cctcgtagtg ggggcgcacg cgcgccgccg cctgcgactg cgggtactgc gcgaacagca
     1441 cgtccgcctg ggccttcgcc gcgatccagt tctgcgccgc gagcgcctcg ttgaacgcgg
     1501 cctcgatggg cctggcggcc tcttcccgcg ccgccgcctg cgcggcggcc gcggcggcgt
     1561 ccgcctgcgc gtcgtggcgc tggcaaccgg cgaggaggcc ggcggcgagg accccggcga
     1621 ggagcggcgc ctgcatgcgg tgcccggtca cggcgtggcg gccggcggcg gcagctcggc
     1681 cctggcgatc gtcgccgcga ccgaggcact ggtgatcggg tggtagccgg gcttcgcctt
     1741 cgcgaagacc tccttggcga acgccaggcc ttccggcgtt ttcaccagcg cgtcgaaggt
     1801 cggcatgatc agcttgcgcc ggccgacgcg ctgcaggaac tccgccatcg gcgcgtcgcc
     1861 ggcgtggtag ccgctgcgca ccgcgagcgg ataccagcgc tgcgcgagct cgccgttggg
     1921 cgtgccgctg aagtggtagg cggcgtcgag ctgggcgagc tgggcgggct ggagcgtgtc
     1981 gcccagcccc tcgatgaagt ggatccactc ctgggtggtc caggcggtgg tgatcgccgg
     2041 cggcggcagc gtgccgttgc ccagccaggc gatgcgcgcc gagtcgacgg tggagaagcc
     2101 gcgcgagcgc gcgcgctcgg cgaaggccgg gatgcccggc tggtgcagcc aggcgtcgag
     2161 ctcggcgtcg gtcaccacgt tggggtgctt cgccagcagg tgcgacttca ggtaatcgac
     2221 gaattcgccc gtggtcgcgc tgcggaacgc gtggtcgtcg aaccagccgc gcaggaacgg
     2281 atcgaagtcc gcgcggccca cgcgctgctc gaggaagcgc aggaaccacg cgcccttggt
     2341 gtaggcgatg tcgctgagcg cgtcgtccgg atcgcgcccg gtgagcgccg gcagcaccag
     2401 cacctggtcg gccggcgcga tctcgccctc ggcgatctgc ctggccaggt cctgctggtc
     2461 gatctggcgc tccatgtcgg ccagctcgac gccgtacagc gcctcggtga tgcgcccctg
     2521 tacgtaggtg gtgaaacctt cgttgagcca gatgttcttc cagctggcgt tggtgaccag
     2581 gttgcccgac cacgaatgcg ccagctcgtg cgcgaccagc gagaccagcg acttgtcgcc
     2641 gacgatcacg gtcggcgtgg cgaaggtcat gcgcgggttc tccatgccac cgaacgggaa
     2701 cgacggcggc agcaccagca ggtcgtagcg ctcccagcgg tacgggccgt agagcgattc
     2761 ggccacctcg atcatcttct cggtgtcctc gaactccttg gccgccttct gcaccatcgc
     2821 cggctcggcc cacacgccgc tgcgcctgcc ggtcgactgg aacaccaggt cgccggcggc
     2881 gatcgcgagc aggtaggacg gaatcggctg cttcatggtg aagcggtagt cgccgctgcg
     2941 cggcacgttg ccgccggcgt ccatcgcgtc gttggccgcg ctcatcagca ccatcgcatc
     3001 cttcggcgcg gtgacgtgcg cggtgtaggt gaagcgcacg ccgggcgtgt cctgcagcgg
     3061 cacccagctg cgggcgtgga tcgcctcgga ctggctgaac atgaagggct gctgcttgcc
     3121 ctcggtcatc gcgggctcca gccactgcag gccggaggcc tcgggcgagg tgcggtaggt
     3181 cacgcgcacg ctggcgttgc gctgcggcac ctggatcgcc agcctgctgc cgaggatggc
     3241 atcgcgcggc gcgagggcgt actgcagcgg cgtccactgg ccggccgcgc cggcgccttc
     3301 gaccttctcg atggcgaggt cgcgggtgtc caggtcgagc tcggtcgcct gcgggtcctg
     3361 ccagtccagc gtgtaggtgg cggtgccggc gagctgcttc cgcgcgaagt ccacggcgag
     3421 gtcgagcgcg agcgcggtga tgcgcacctt ctgcggctcg gcgtacgaat gttcgtcgtg
     3481 gtccacggcc tgcacggcgg gcttcctgtc aacggcgggc gccaccgcgg cgggcggcga
     3541 gggttcgcgc gagcaggcgg caagcacgac ggcggaaagc atgagggcgg caacgcgcag
     3601 cgacatggac acgacccggc aggcagggac ggggagtgta gccgcggccc gtgcgacctg
     3661 cccgggcggg tccgtgatgc gcgtcgccca tcaatggcgg cccgggtagc gctggtgcac
     3721 gaagttgcgg ccggcgcgcg cctggtggtt gcggttgtcc ggttcctggt gcagcagcct
     3781 gcgggtcacg ccgttggtcc agccgaagcc gtcctgcagc gggtactcgc cgccgccgcc
     3841 gccgaccgcg ccttccggcg tgggctccag cacgtatttc tccaccagct tgctctcgcg
     3901 ttcgtacagg ctgccgacgg tgtcgagcca gcgcgcgctg atgtcgcagg cgagcgcttc
     3961 ctcgccatac cggcgcaggc ccgagatcgc catccactgc aacggcgccc agccattggg
     4021 ctggtcccac tgttcaccgg tggcgcggca gctggtggcg aggccgccgg gctcgagcag
     4081 gtgcgcgtgc agcgcgcgcg cgacgcggtg cgcctggtcc ggcgtcgcca ggccgacgaa
     4141 cagcggcacc gcgatcgccg cgctggcctg cgcgcggcgg cggtcgtgca cgcggtcgta
     4201 gtcgacgaag gcgccgaggc gttcgtccca cagccagcgg tcgatcgccg cgcggcgcgc
     4261 gcgagcgcgc cggccgaatt cgtcggcgcc acgcgcgtcg ccatccaccc ggctcagctg
     4321 cgcgatctgc gcctccagct tgaacaggaa ggcattgagg tcgaccggca ggatggtggt
     4381 ggtgcgcgtg gtcgcgaggt cgccgtcctc gtcgcaccag cgcgaactga agtcccagcc
     4441 cgaggccgcc gccgaccgca gctcgcggta tacctccgcg gccgggcgcc ggctgcgccg
     4501 cgcggtggtc tcgtcctcca gccacgcttc ctcgcgcggg atgtcgcgcg cgtcccagta
     4561 gcggttgagc agcgcaccgt cgggcaggcg cacgacgtgg cggtcggcat catcgcgccg
     4621 cagttcgtcc gcgccgtcca tccagaaggc gtgctcgcgc ttgaggcgcg gcaggtagct
     4681 gaccgcgcgg cacagggcat gcgcctcgaa cagttccacc atcaggctga acaccggcgg
     4741 ctgcgagcgg ctgaggtagt agctgcggtt gccgttgggg atgtggccgc aggtgtcgac
     4801 caggtaggcg aagttgtccg ccatgctgac cagcaggtcg cgccgcccgc tttcggcgag
     4861 gccgagcatc gtgaaatacg agtcccagta atacatctcg ccgaagcgcc cgccggggac
     4921 cacgtactgc tccggcagcg gcagcagggt cgagaacggc ggatgctcgc gcggctggcg
     4981 ggtgagcacc ggccacaggc cgtcgatgtg gtcgaccagc gactggtcgg ggtcggacac
     5041 gtaatggctg tccggcggcc gctcggcccg gaagcgcgcg tgcacgaacg cgacgaggtc
     5101 gaagcccggc gtcgcgcggc gcgcgcggta ctcggcgagg atgtcgtcgg gtcggccgcg
     5161 tggcgcgcag tcgacgaagg tcttgctgtc ggcgaacacg cgggcgcgct gcacgtccgc
     5221 gaacagctcc tggtagcggt cggccggact gagcggatcg gggcgtggtc cctcgtcggc
     5281 gcgcgcggcc agggcgtcgg gctgcctgac gccgacggac gggcgctcgc ggtcggcggc
     5341 ggtgtgctgc acgcattcac gctaacgggc cgcgcgtcaa tgcgg
//
LOCUS       DATIQC010000084         4139 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_429373, whole genome shotgun sequence.
ACCESSION   DATIQC010000084 DATIQC010000000
VERSION     DATIQC010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429373"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1743
                     /locus_tag="VLM17_01805"
     CDS             <1..1743
                     /locus_tag="VLM17_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006388908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ family protein"
                     /protein_id="HSR64323.1"
                     /translation="QGGSVVVDVGNANLPAALRRPLDVSDFATPVQRVDAAQVGTGAR
                     LVLTTNGPFEPLAYQTGRDYIVEIVPRAATAKGNLAGGATAVGATSAMGGSVSSGAPP
                     RYSGKPVTFNFQDVPVRTVLQLIAEESNLNIVASDTVSGNVTLRLVNVPWDQALDLVL
                     QAKGLDKRRNGNVVWVAPQAEIAKYEQDREDARIAIENRAEMVTEYIPISYGNAEDLA
                     KLLTEESKNSSGGGAGATNKSRGFLSPRGSISFDRRTNTLLVIDIPQRVQGIKDLVQL
                     LDKPVDQVVIEARIVVANESFARELGAKFGISGANNNVNFSGNLDANTANRNSQVNTD
                     IANQTALNTYNSALTTYNACVNGGGTNCGAAPIAPILRGSTITRGLMTNLPSTLAGAG
                     SLALSILNAGYLLDVELSALQTEGRGEVISNPRVVTSNQKEALIKQGQEVGYLTLTGA
                     GTAGGTQVPQVQFKEAVLQLKVTPTITADGRVFLNMDVIKDEVSGFVDTGVGQVPTIA
                     KREVNTAVLMEDGQTVVIGGVYEFKDSTDMSKVPFLADIPVIGNLFKRNGRTKSKAEL
                     LVFVTPKVIRVAQR"
     gene            1898..2890
                     /locus_tag="VLM17_01810"
     CDS             1898..2890
                     /locus_tag="VLM17_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017166368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR64324.1"
                     /translation="MDSRSDDGSRLHDAFASLRAALSAEIVGQSALVERLLIALLADG
                     HLLVEGAPGLAKTSAIRALAARLDADFARVQFTPDLLPADLTGTEVFRPQEGRFEFQP
                     GPIFHPLLLADEINRAPAKVQSALLEAMGERQVTVGRHTYPLPPLFLVMATQNPIEQE
                     GTFPLPEAQLDRFLMYVRIGYPDAEVEGEILRLARERARAAMAPAAAPALRLPLEDVF
                     AARAQVLDLHVAPALERYVVELVLASRDAGRYDAALARRIAWGASPRGSIALERCARA
                     RAWLAGRDFVTPEDIRAIAPDALRHRVLPSYEATAEGWDGERLVQALLDVVPVP"
     gene            2900..3820
                     /locus_tag="VLM17_01815"
     CDS             2900..3820
                     /locus_tag="VLM17_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSR64325.1"
                     /translation="MRTEPACADATATGVTPTLAALVALRALVQGRRPAPRGRFGSAG
                     HALSPLRGRGMEYAESREYAHGDDARHIDWRLTARSGRPHTKLFQAERERLTLVVADT
                     APALYFGTQVRFKSVQAARAGALAAWAAVRDGDRIAALRGSVREAPVPPAAGPRGALR
                     VLDALVRWYARPPDDDAGLAIALDHARRLLRPGSRLVVLADPASIAAVPAQRWPALSL
                     HNEVIVLLLADPLELSPPQAALPFLAAGHRVELDLAAAAQRQGWRHAFRDPIDAALAS
                     LPARGVRVQVLASDAPSESWLPLLGASRAA"
     gene            3817..>4139
                     /locus_tag="VLM17_01820"
     CDS             3817..>4139
                     /locus_tag="VLM17_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4381 family protein"
                     /protein_id="HSR64326.1"
                     /translation="MNGALVLRDIHQPPAPPWWPPAPGWWLLAALVLVASMVPAWRAW
                     RRRRRRLAHARLFDAAVAAAATPVARVAAISELLRRAARRIDPAADKLLGDDWLRFLD
                     RDAPSP"
BASE COUNT          601 a         1569 c         1420 g          549 t
ORIGIN      
        1 cagggcggct cggtcgtcgt cgacgtcggc aacgccaacc tgccggcggc gctgcgcagg
       61 ccgctggacg tcagcgactt cgccaccccg gtgcagcgcg tcgacgccgc ccaggtcggc
      121 accggcgcac ggctggtgct caccaccaac ggaccgttcg aaccgctcgc ctaccagacc
      181 ggccgcgact acatcgtcga gatcgtgccg cgcgcggcga ccgccaaggg caacctggcg
      241 ggcggcgcca ccgcggtggg cgccacgtcg gcgatgggcg gcagcgtctc ctccggcgca
      301 ccgcccaggt acagcggcaa gcccgtcacg ttcaacttcc aggacgtgcc ggtgcgcacc
      361 gtcctgcagc tgatcgccga ggaatccaac ctcaacatcg tcgcctccga caccgtcagc
      421 ggcaacgtca cgctgcggct ggtcaacgtg ccgtgggacc aggcgctcga cctcgtgctg
      481 caggccaagg gcctggacaa gcgccgcaac ggcaacgtcg tctgggtcgc gccgcaggcg
      541 gagatcgcca agtacgagca ggacagggaa gacgcgcgca tcgcgatcga gaaccgcgcc
      601 gagatggtga cggagtacat cccgatcagc tatggcaacg cggaagacct cgccaagctg
      661 ctgaccgagg agagcaagaa cagctcgggc ggcggggccg gcgcgaccaa caagagccgc
      721 ggcttcctgt cgccgcgcgg cagcatcagc ttcgaccgcc gcaccaatac cctgctcgtc
      781 atcgacatcc cgcagcgcgt ccagggcatc aaggacctgg tccagctgct cgacaagccg
      841 gtcgaccagg tggtgatcga ggcgcgcatc gtggtggcga acgagtcgtt cgcccgcgaa
      901 ctcggcgcga agttcggcat cagcggcgcc aacaacaacg tcaacttcag cggcaacctc
      961 gacgccaaca ccgccaaccg caactcgcag gtcaacaccg acatcgccaa ccagacggcg
     1021 ctgaatacct acaactcggc gctgacgacc tacaacgcct gcgtgaacgg cggtggcacc
     1081 aactgcggcg cggcgcccat cgcgccgatc ctgcgcggct cgacgatcac ccgcggcctg
     1141 atgaccaacc tgccgagcac gctggccggt gccggttcgc tggcgctgtc gatcctcaac
     1201 gccggctacc tgctggacgt cgagctgtcc gcgctgcaga ccgaaggccg cggcgaggtc
     1261 atctccaatc cgcgcgtggt gaccagcaac cagaaggaag cgctgatcaa gcaggggcag
     1321 gaagtcggct acctgaccct gaccggcgcc ggcaccgccg gcggcacgca ggtcccgcag
     1381 gtccagttca aggaagcggt gctgcagctc aaggtcaccc cgaccatcac cgccgatggc
     1441 cgcgtcttcc tcaacatgga cgtgatcaag gacgaggtgt ccggtttcgt cgacaccggc
     1501 gtcggccagg tcccgaccat cgccaagcgc gaggtcaaca ccgcggtgct gatggaggat
     1561 ggccagaccg tggtgatcgg tggcgtctac gagttcaagg acagcaccga catgtcgaag
     1621 gtgcccttcc tcgccgacat cccggtgatc ggcaacctgt tcaagcgcaa cggacggacc
     1681 aagagcaagg ccgaactgct ggtcttcgtg acgccgaagg tgatccgcgt cgcgcagcgc
     1741 tgagccggtg cggcatcacg cgaaggggcc gcaaggcccc ttcgtcgttc cagcgtggcg
     1801 tgcaggaagc ctgaacgccc ggcgcgcgcc ctgaaccatc cgtccgcgca ccggtcaaac
     1861 tcggccctgg cgccttccgc gcccaccgag ggatcgcatg gacagccgca gcgacgacgg
     1921 ttcccgcctc catgacgcat tcgcgtcgct gcgtgcggcg ctctccgccg agatcgtcgg
     1981 ccagtccgcg ctggtcgagc gcctgctcat cgcgctgctg gccgacggcc acctgctggt
     2041 cgagggcgcg ccgggccttg cgaagaccag cgcgatccgc gcactcgccg cgcgcctgga
     2101 tgcggacttc gcgcgcgtgc agttcactcc cgacctgctg cccgccgacc tcaccggcac
     2161 cgaggtgttc cgcccgcagg aaggccgctt cgaattccag cccggcccga tcttccaccc
     2221 gctgctgctc gccgacgaga tcaaccgcgc gccggccaag gtgcagtcgg cgctgctcga
     2281 ggcgatgggc gaacgccagg tcaccgtcgg ccgccacacc tatccgctgc cgccgttgtt
     2341 cctggtgatg gcgacgcaga acccgatcga gcaggaaggc accttcccgt tgcccgaagc
     2401 gcagctcgac cgcttcctga tgtacgtgcg catcgggtat cccgacgcgg aggtcgaagg
     2461 cgaaatcctg cgcctggcgc gcgagcgcgc gcgcgccgcg atggcccccg ccgccgcgcc
     2521 cgcgctgcgc ctgccgctcg aggacgtgtt cgcggcgcgc gcgcaggtgc tcgacctgca
     2581 cgtcgcgccg gcgctcgagc gctacgtcgt cgagctggtg ctggcctcgc gcgacgccgg
     2641 acgctacgac gccgcgctcg cgcggcgcat cgcctggggc gccagcccgc gcggctcgat
     2701 cgccctggaa cgctgcgcgc gcgcacgcgc atggctcgcc ggccgcgact tcgtgacgcc
     2761 ggaagacatc cgcgccatcg cgcccgacgc attgcgccat cgcgtgctgc cgagttacga
     2821 ggccaccgcc gaaggctggg acggcgaacg cctggtgcag gcgctgctcg acgtggtgcc
     2881 ggtgccctga aagcaacgca tgcgaaccga acccgcctgc gctgacgcga ccgccaccgg
     2941 cgtcaccccc acgctggccg cgctggtcgc gttgcgcgcg ctggtgcagg gacgccgccc
     3001 cgcgccgcgc ggccgcttcg gcagcgccgg ccatgccctg tcgcccctgc gcgggcgcgg
     3061 catggaatac gccgaatcgc gcgagtacgc ccatggcgac gacgcgcgcc acatcgactg
     3121 gcggctcacc gcgcgcagcg gacgtccgca taccaagctc ttccaggccg agcgcgagcg
     3181 gctgacgctg gtggtcgcgg acacggcgcc cgcgctgtac ttcggcaccc aggtgcgctt
     3241 caagtcggtg caggccgcgc gcgcgggcgc gctcgccgcc tgggcggcgg tgcgggacgg
     3301 cgaccgcatc gccgcgctgc gcggcagcgt gcgcgaggcg ccggtgccgc cggcggccgg
     3361 gccgcgcggc gcgttgcgcg tgctcgatgc gctggtgcgc tggtatgcac ggccgcccga
     3421 cgacgacgcc ggcctcgcga tcgcgctcga ccacgcgcgt cgcctgctgc gcccgggctc
     3481 gcgcctggtc gtgctcgccg atccggccag catcgccgcc gtccccgcgc agcgctggcc
     3541 cgcgctctcc ctgcacaacg aggtgatcgt gctgctgctg gccgacccgc tcgagctgtc
     3601 cccgccgcaa gccgcgctgc cgttcctggc cgcgggacac cgcgtcgagc tggacctggc
     3661 cgcggcggcg caacggcagg gttggcggca tgcgttccgc gatccgatcg acgcggcgct
     3721 ggcgtccctg ccggcgcgcg gcgtgcgcgt gcaggtgctg gccagcgacg cgcccagcga
     3781 gtcgtggctg ccgctgctcg gcgcgagccg cgcggcatga acggcgcgct cgtcctgcgc
     3841 gacatccacc agccgccggc gccgccgtgg tggccgcccg cgccgggctg gtggctgctg
     3901 gccgcgctcg tcctggtcgc gtcgatggtg ccggcctggc gggcgtggcg tcgtcgccgg
     3961 cgccgcctcg cgcatgcgcg gctgttcgat gcggcggtcg ccgccgcggc tacccccgtg
     4021 gcgcgcgtcg ccgccatctc cgaactcctc cgccgcgccg cgcgccgcat cgatccggcg
     4081 gcggacaagc tgctcggcga cgactggctg cgcttcctcg atcgtgatgc gccatcgcc
//
LOCUS       DATIQC010000085         3815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_499926, whole genome shotgun sequence.
ACCESSION   DATIQC010000085 DATIQC010000000
VERSION     DATIQC010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3815
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499926"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VLM17_01825"
     CDS             complement(<1..556)
                     /locus_tag="VLM17_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005930920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HSR64327.1"
                     /translation="MHYRRLGSSGLQLSALSFGAWVTFGNQVGRGLARELVAAAWDHG
                     INFFDNAETYAAGEAERVMGDVIADLRLPRDGFCVSSKVFFGAEKEPRPTQKGLSRKH
                     VHDACHAALKRLRVDYLDLFFCHRPDPDTPIAETVWAMDVLVRQGKVLYWGTSEWEAG
                     QIREAHAIARAHRLHAPTMEQPQYN"
     regulatory      638..734
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00080"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="yybP-ykoY riboswitch is a manganese riboswitch that
                     directly binds Mn; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="manganese"
                     /db_xref="RFAM:RF00080"
     gene            836..1402
                     /locus_tag="VLM17_01830"
     CDS             836..1402
                     /locus_tag="VLM17_01830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM165/GDT1 family protein"
                     /protein_id="HSR64328.1"
                     /translation="MSFAPLLVSAGTVALAEIGDKTQLLALLLAARFRRPWPIVAGIL
                     VATLLNHAIAGEVGALAAHWLTPEVMRWVVAASFIAIALWTLRPDSLDDGTTLPARGA
                     FVATTLAFFVAEIGDKTQVATVLLAAKYPSLLQVVAGTTIGMLLANVPVVALGSRFAN
                     RLPLRAARLVAACVFLLLGAWVAWRGIG"
     gene            1457..2569
                     /locus_tag="VLM17_01835"
     CDS             1457..2569
                     /locus_tag="VLM17_01835"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR64329.1"
                     /translation="MRDYLATLLARPDEIMLVQGAGGELLVARIRALLSALILLLPLA
                     NAVTGAKIDETLIGLGAAVATNIVAQAWLALARNPRRHGWLPYATGTWDVTATTGVLV
                     LLALGDRAAGLNSMVVWAFYLIAIVLTALRNDGRLTLYVTMLAILEYGLLAWTVLVAS
                     DPDQLASVDYGVASAANQIERLVLILLMGLLTIALVQRMQRLIELSGRDGLTGLPNRL
                     WLLQRMPAIFEEVRGGGGSLTLALLDLDRFRLVNDEVGHRDGDRAIRQIATLVGETLD
                     AHERIVRIGGQEFVLLLLCPLGNAWERVDRLRRAIGTRQFVPEFGADPLRITFSAGLA
                     AWPQDGVDLSALLHSADRRLRQAKRDGSNRVVARDF"
     gene            2681..3679
                     /gene="dusB"
                     /locus_tag="VLM17_01840"
     CDS             2681..3679
                     /gene="dusB"
                     /locus_tag="VLM17_01840"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011050554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HSR64330.1"
                     /translation="MRIGPHAIVPPVILAPMAGVTDKPFRVLCKRLGAGLCVSEMTTS
                     DPRFWNTAKSRHRMDHAGEPAPVSVQIAGTVPEVMADAARYNVDHGAQLIDINMGCPA
                     KKVCNAWAGSALMRDEALVARILEAVVAAVEVPVTLKIRTGWASGARNALAIARIAEA
                     SGVQALAIHGRTRDQQYAGVAEYDTIAAVKAALSIPVIANGDIDSPRKAAAVLRHTGC
                     DAVMIGRAAQGRPWIFREVAHHLATGELLPEPAIAEVRDVLLAHLEHLHAFYGEPSGV
                     RIARKHLGWYAKDRPENQAFRHVVNRAETADAQLRLTRDYFDALAAGVAPRLPVAA"
BASE COUNT          501 a         1389 c         1378 g          547 t
ORIGIN      
        1 ggttgtattg cggctgctcc atcgtcggcg cgtgcaggcg gtgcgcgcgc gcgatcgcat
       61 gcgcctcgcg gatctgcccg gcctcccatt ccgacgtgcc ccagtacaac accttgccct
      121 ggcggaccag cacgtccatc gcccacacgg tttcggcgat gggcgtgtcg gggtcggggc
      181 ggtggcagaa gaacaggtcg aggtagtcca cgcgcaggcg cttcagcgcc gcatggcagg
      241 cgtcgtgcac gtgcttgcgg gacagcccct tctgggtcgg ccgcggttcc ttctccgcgc
      301 cgaagaacac cttgctcgac acgcagaagc cgtcgcgcgg caggcgcagg tcggcgatca
      361 cgtcgcccat cacccgttcg gcctcaccgg cggcgtaggt ctcggcgttg tcgaagaagt
      421 tgatcccgtg gtcccaggcg gcggcgacga gctcgcgcgc gaggccgcgg ccgacctggt
      481 tgccgaaggt gacccacgcg ccgaacgaca gcgcggacag ctgcaggccg gacgagccga
      541 ggcggcggta gtgcatgggc gtgctccgtg gcggcaggct ggcgagtgta gccgcagcgg
      601 gcgcgcgcct ccgtccgcgg ctacaatgcg cgctcctcct ccggggagta gcccaccggc
      661 gacgcgtcgc cggggcgcgc gtcaacatgc ttggccggct ggccatggcg cgcggacatc
      721 gcggcacgcg atgcgggcaa gaccgaaggc aggcgcgtgc gtacccgggg ccgggccgca
      781 ggcgtccgcc ttcgcgtcca gcgaatgccc ggctccggag ttgccgatgc tccccgtgtc
      841 cttcgctccc ctgctggtgt ccgcaggcac cgtcgcactc gccgaaatcg gcgacaagac
      901 ccagctgctc gccctgctgc tggccgcgcg cttccgccgg ccctggccga tcgtcgccgg
      961 catcctggtc gcgaccctgc tcaaccacgc gatcgccggc gaagtcgggg cgttggccgc
     1021 gcactggctg acgccggaag tgatgcgctg ggtcgtggcc gccagcttca tcgccatcgc
     1081 cctgtggact ttgcggcccg actcgctcga cgacgggacc acgctgcccg cgcgaggcgc
     1141 cttcgtcgcc acgacgctgg cgttcttcgt cgccgagatc ggcgacaaga cccaggtggc
     1201 gacggtgctg ctggcggcca agtatccgtc gctgctgcag gtggtcgccg gcaccacgat
     1261 cggcatgctg ctggcgaacg tgccggtggt ggcgctcggc agccgcttcg ccaaccgcct
     1321 gcccctgcgg gcggcgcgcc tggtcgccgc ctgcgtcttc ctgctcctgg gcgcctgggt
     1381 ggcctggcgc ggcatcgggt agtctgcgcg gcaaccggag ggcgggaggc cggcgatgcg
     1441 cggatcgggg caatgggtgc gtgactacct ggcgacgctg ctggcgcgcc cggacgagat
     1501 catgctcgtc cagggcgccg gcggcgaact gctggtcgcg cggatccgcg cgctgctgtc
     1561 ggcgctgatc ctgctgctgc cgctggccaa tgcggtcacc ggcgccaaga tcgacgaaac
     1621 cctgatcggg ctgggcgccg cggtggccac gaacatcgtc gcccaggcct ggctcgcgct
     1681 cgcgcgcaac ccgcgccggc atggctggct gccctacgcc accggcacct gggacgtcac
     1741 cgcgaccacc ggcgtgctgg tgctgctcgc gctcggcgac cgcgccgccg gcctcaacag
     1801 catggtcgtg tgggcgttct acctgattgc gatcgtgctc accgcgctgc gcaacgacgg
     1861 ccggctgacg ctgtacgtga cgatgctcgc gatcctcgag tacggcctgc tcgcctggac
     1921 cgtgctggtg gcctccgacc ccgaccagct cgcctcggtc gactacggcg tcgcctcggc
     1981 ggccaaccag atcgagcggc tggtgctgat cctgctgatg ggcctgctca cgatcgcgct
     2041 ggtgcagcgc atgcagcggc tgatcgagct gtccggacgc gacggcctca ccggcctgcc
     2101 caaccgcttg tggctgctgc agcgcatgcc ggcgatcttc gaggaggtgc gcggcggcgg
     2161 cggttcgctg accctggcgc tgctggacct cgaccgcttc cggctggtca acgacgaggt
     2221 cggccaccgc gacggcgacc gcgcgatccg ccagatcgcg accctcgtcg gcgagacgct
     2281 ggacgcgcac gaacgcatcg tgcgcatcgg cggacaggag ttcgtgctcc tgctgctgtg
     2341 cccgctcggc aacgcctggg agcgcgtcga ccgcctgcgc cgcgcgatcg gcacgcgcca
     2401 gttcgtgccg gaattcggcg ccgatccgct gcgcatcacc ttcagcgccg ggctggccgc
     2461 gtggccgcag gacggggtgg acctgtccgc cctgctgcac agcgccgacc gccgcctgcg
     2521 ccaggccaag cgcgacggca gcaaccgcgt ggtggcgcgc gacttctagc gtgtcgcgcc
     2581 caggcaacgc gtgtcggcga agggcgtgga gagttgaccg gcctggtaca ggtcgcgcct
     2641 tccgcccggt cgccggaccg gcggcggtaa aatcgccgcc atgcgcatcg gcccgcacgc
     2701 catcgttccg cccgtgatcc tcgcgcccat ggcgggcgtg acggacaaac cgttccgggt
     2761 gctgtgcaag cgcctgggcg cgggcctgtg cgtgtcggag atgaccacct ccgatccgcg
     2821 tttctggaac accgccaagt cgcgccatcg catggaccac gcgggcgagc cggcgccggt
     2881 cagcgtgcag atcgccggca cggtgccgga ggtgatggcc gatgcggcgc ggtacaacgt
     2941 cgaccacggc gcgcagctca tcgacatcaa catgggctgc ccggcgaaga aggtgtgcaa
     3001 tgcatgggcg ggctcggcgc tgatgcgcga cgaggcgctg gtcgcgcgca tcctcgaggc
     3061 ggtggtcgcc gccgtggagg tgccggtgac gctgaagatc cgcaccggct gggcgtccgg
     3121 cgccaggaac gcactggcca tcgcgcgcat cgccgaagcc agcggcgtgc aggcgctcgc
     3181 catccacggg cgcacccgcg accagcagta cgccggcgtc gccgaatacg acaccatcgc
     3241 ggcggtgaag gcggcgctgt cgatcccggt catcgccaac ggcgacatcg actcgccacg
     3301 caaggccgcc gccgtgctac ggcataccgg ctgcgacgcg gtgatgatcg ggcgggccgc
     3361 gcaggggcga ccgtggatct tccgcgaggt cgcccaccat ctcgcgaccg gcgaactgct
     3421 gcccgagccc gcgattgcgg aagtgcgcga cgtgctgctc gcgcacctcg agcacctgca
     3481 tgccttctac ggcgagccgt ccggggtgcg catcgcgcgc aagcacctgg gctggtatgc
     3541 gaaggaccgt cccgagaacc aggccttccg ccacgtcgtc aaccgcgcgg agaccgcgga
     3601 cgcgcagctg cgcctgaccc gcgattactt cgacgcgctg gcggcgggcg tggcgccgcg
     3661 gctgccggtc gcggcctgac gcccgtcgcc ggcgcggccc ggggcggccg gcgccgccgc
     3721 acgaaacggg acgtcccgcg ggcgcgggcc cgcagcgggc ccccggaatc ccgcgacggc
     3781 gcgaagccga caccagcatc gccttgcggc cccta
//
LOCUS       DATIQC010000086         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_464956, whole genome shotgun sequence.
ACCESSION   DATIQC010000086 DATIQC010000000
VERSION     DATIQC010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464956"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VLM17_01845"
     CDS             complement(<1..648)
                     /locus_tag="VLM17_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HSR64331.1"
                     /translation="MDPLDSIYRWSERLRDRARALAFLRFLWRRLLDDRLFESAGALS
                     YTTAFALVPLSMVAFGVISGFKSFTEWSQRLQSYIIASFAPGAAGALGHYLKAVTDNV
                     ATLTTAGVIALVVSLLVTLTQIEAAFNHIWRVKTARPRLGRFLIYWTVLTLGAMVAAA
                     SLALSTRFFALAVFETVPGRMLEALMLQLAPMAIELVAFTLIFRLVPHRTVQWRHA"
     gene            740..1330
                     /gene="wrbA"
                     /locus_tag="VLM17_01850"
     CDS             740..1330
                     /gene="wrbA"
                     /locus_tag="VLM17_01850"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010367335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HSR64332.1"
                     /translation="MAEILVLYYSRGGSVARLARQVARGVGEVAGMAARLRTVPPVAA
                     ITQAAAPPVPDEGAPYVERSDLAECAGLLLGSPTRFGTMAAPLKHFIDSLGSEWTSGA
                     LVGKPAGVFTSTATMHGGQEATLLSMGVPLLHHGCVLVGLPYTEGALSTTRGGGTPYG
                     ASHVAGHADDPQPSDEEAQLARALGRRVAQLAARLA"
     gene            1327..1677
                     /locus_tag="VLM17_01855"
     CDS             1327..1677
                     /locus_tag="VLM17_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003472250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2069 domain-containing protein"
                     /protein_id="HSR64333.1"
                     /translation="MSAPSSRPGRGALVACLAALALLYACWFLPREPVALLVFGLPPA
                     LLALLGWRGSARAGFFAGVLALLWFSHGVMVAWTRPPERGFAWLEIALALAVVWFASA
                     PGLRARFAKRKPRA"
     gene            1706..>2189
                     /locus_tag="VLM17_01860"
     CDS             1706..>2189
                     /locus_tag="VLM17_01860"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR64334.1"
                     /translation="MAGLPADAVARLQAAARAVRDGALDEAQRLLDGVLDAGPEHAEA
                     LRVAAILHGRRGDAARACQTLERAIALHPGDALLHSDLGNMRMALGDHEGAFAGWRRA
                     CQLAPDQAMPWFNLGRNLQLQGESHAAAEALATAHRLAPDFLPATVLLGDALAHLGRF
                     D"
BASE COUNT          289 a          790 c          832 g          278 t
ORIGIN      
        1 ggcgtgccgc cactgcacgg tgcgatgcgg aacgaggcgg aagatcaggg tgaaggcgac
       61 cagctcgatg gccatcggcg cgagctgcag catcagcgcc tccagcatgc gccccggcac
      121 ggtctcgaac accgccaggg cgaagaagcg cgtcgacaac gccaggctgg ctgccgcgac
      181 catcgcgccg agcgtgagca ccgtccagta gatcaggaag cggcccagcc gcgggcgcgc
      241 cgtcttcacc cgccagatgt ggttgaacgc ggcctcgatc tgggtgagcg tgaccagcag
      301 cgacaccacc agggcgatca cgccggcggt ggtcagggtc gcgacgttgt cggtcaccgc
      361 cttgaggtag tggccgagcg cgccggcggc gcccggcgcg aagctggcga tgatgtagct
      421 ctggaggcgc tgcgaccact cggtgaacga cttgaagccc gagatcacgc cgaaggcgac
      481 catcgacagc ggcaccagcg cgaaggcggt ggtgtaggac agcgcgccgg ccgattcgaa
      541 caaccggtcg tcgagcagcc gccgccacag gaagcgcagg aacgcgagtg cccgcgcgcg
      601 gtcgcgcagg cgttcgctcc agcggtagat cgagtccagc gggtccatgc ggcgaagggt
      661 acccgaacgc cgtcgccgca cggtcggcgc gttccgccgg cgcgggcctt ggcctatgct
      721 ggcccgcccg gaggacacga tggccgagat cctggtgctg tactacagcc gtggcggttc
      781 cgtggcacga ctggcgcggc aggtcgcgcg cggcgtcggc gaggtcgcgg gcatggccgc
      841 gcgcctgcgc acggtgccgc cggtcgcggc gatcacccag gccgccgcgc cgccggtgcc
      901 cgacgagggt gcgccctacg tcgaacgcag cgacctcgcc gaatgcgccg gcctgctgct
      961 cggcagcccg acccgcttcg gcaccatggc cgccccgctc aagcatttca tcgactcgct
     1021 cggcagcgaa tggaccagcg gcgcgctggt cggcaagccc gccggcgtgt tcacctcgac
     1081 cgcgaccatg cacggcggcc aggaagcgac gctgctgtcg atgggcgtgc cgctgctgca
     1141 ccacggctgc gtgctggtcg gcctgccgta taccgaaggc gcgctgagca cgacccgcgg
     1201 cggcggcacg ccatacggcg ccagccacgt cgccgggcat gcggacgacc cgcagccgag
     1261 cgacgaggaa gcgcagctcg cgcgcgcgct cgggcggcgg gtggcgcagc tcgcggcgag
     1321 gctggcatga gcgcgccgtc gtcccgtccc gggcgcggcg cgctggtcgc gtgcctggcc
     1381 gcgctcgccc tgctgtacgc gtgctggttc ctgccgcgcg aacccgtggc gctgctggtg
     1441 ttcggcctgc cgccggcgct gctggcgctc cttgggtggc gtggcagcgc gcgcgccggc
     1501 ttcttcgccg gcgtgctcgc gttgctgtgg ttctcgcacg gggtgatggt ggcctggacg
     1561 cgaccgccgg aacgcgggtt cgcgtggctg gagatcgcac tggcgctggc ggtggtgtgg
     1621 ttcgccagcg cgcccggact gcgcgcgcgg ttcgccaagc gcaagccgcg cgcctgaggt
     1681 ggcgatgccg gcaccggatc cgcgcatggc cgggttgccc gccgacgcgg tcgcccgcct
     1741 gcaggccgcc gcgcgcgcgg tccgcgacgg ggccctggac gaagcgcagc gactgctcga
     1801 cggcgtgctc gacgcgggcc cggagcacgc cgaggccctg cgcgtggccg cgatcctgca
     1861 cggccgtcgc ggcgacgcgg cgcgcgcatg ccagacgctg gagcgggcga tcgcgctgca
     1921 tcccggggat gcgctgctgc acagcgacct cggcaacatg cgcatggcgc tcggcgacca
     1981 cgagggcgcc ttcgccggct ggcgccgcgc ctgccagctc gcgccggacc aggcgatgcc
     2041 gtggttcaac ctcggccgca acctgcagct gcagggcgag agccatgcag ccgcggaagc
     2101 gctggcgacg gcgcaccggc tggcgccgga cttcctgccg gccacagtgc tgctcggcga
     2161 tgcgctggcc cacctcggcc gcttcgacg
//
LOCUS       DATIQC010000087         8024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_429624, whole genome shotgun sequence.
ACCESSION   DATIQC010000087 DATIQC010000000
VERSION     DATIQC010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8024
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429624"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..828)
                     /locus_tag="VLM17_01865"
     CDS             complement(<1..828)
                     /locus_tag="VLM17_01865"
                     /EC_number="2.7.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019338784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphate--fructose-6-phosphate
                     1-phosphotransferase"
                     /protein_id="HSR64335.1"
                     /translation="MATGNLLYAQSGGVTAVINATATAVIEAARARGVKVLAGRNGIL
                     GVLREELIDTSKESRATLRALAHTPGGAFGSCRVKLKSLEEDRAKYERLLAVFRAHDV
                     RWFLYNGGNDSADTALKISRLAEASGYPLTCVGVPKTVDNDLAVTDCCPGFGSAAKYT
                     AVSVRECALDVAAMADTSTKVFVYEAMGRHAGWLAAAAGLAGGGPDEAPHLILFPERP
                     FDEADFLAKVRATVGRIGYCVVVASEGIRTADGRFVADAGAGKDAFGHTQLGGVASHL
                     "
     gene            984..1562
                     /locus_tag="VLM17_01870"
     CDS             984..1562
                     /locus_tag="VLM17_01870"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HSR64336.1"
                     /translation="MRLVLLGAPGSGKGTQAARLKEHLQVPHISTGDLLRAEVAAGSP
                     LGSAAKEVMARGELVSDAILLGMLEDRFSRPDTARGFILDGYPRNLAQADALGQLLAK
                     IGQGFDYAVQLDVPTELLVERIAGRAKAEGRADDTPESVRTRLKVYNDVTAPVIEYYR
                     QHGQLTVVDGVGSLDEVFNRIVEAIAPEKAVG"
     gene            1752..3182
                     /locus_tag="VLM17_01875"
     CDS             1752..3182
                     /locus_tag="VLM17_01875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HSR64337.1"
                     /translation="MKLHILGLAGTFMGGVAALARELGHTVEGSDQAVYPPMSTQLET
                     LGIALRQGYAPANISPDCDMVVVGNALSRGNPAVEQVLDDGRAYTSGAQWLAEHVLPR
                     RDTLAVAGTHGKTTTTTILTFLLQAAGREPGFLIGGVAEDFGVSARVGQGGEFVVEAD
                     EYDTAFFDKRSKFVHYRPLVAILNNLEYDHADIFPDVAAIQRQFHHLVRTVPRRGRLV
                     VNGEDARLAEVLAMGCWTRVETFGLDPTLVQPSAQALGHGGHGDDAVAAGADFHWTAR
                     LLAEDGSAFVVVQDGREVGEVRWPLLGRHNVMNALAALAAAHAVGVDVGSVLPALANF
                     RSVKRRLEVLGARGGITVYDDFAHHPTAIATTLAGLRAKVGDARIVVAMEPRSNSMRL
                     GAHADALAPSLDGADVVVFLHKPELAWDAGRVVGALRGEGVTTPDADMLIAALRARVR
                     DGDHVVFMSNGGFDGAPRRFLATLSD"
     gene            3195..3857
                     /locus_tag="VLM17_01880"
     CDS             3195..3857
                     /locus_tag="VLM17_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HSR64338.1"
                     /translation="MHVAPDDAQALKADSFGRIDLLRDADGSPFVRRDLRHVPWWLRP
                     PAWWLARREARALRLVAGMADVPQLLRWNGRVLDRSYLDGVALYQRPPRGDAAWFRDA
                     HRLLRQLHRRGIAHNDLAKEANWLVLADGRPAVVDFQLAVHGHPRARWLRLLAREDLR
                     HLLKHKRTYCPGALTAVERRLLRRHSWVRDAWFATGKPVYRVLTRRILRWEDNEGQGP
                     KP"
     gene            3913..4728
                     /locus_tag="VLM17_01885"
     CDS             3913..4728
                     /locus_tag="VLM17_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR64339.1"
                     /translation="MTLSGKTLFITGASRGIGRAIALRAARDGANVAIVAKSAVANPK
                     LPGTIHSVAAEVEAAGGRALALQCDIREEDQVQAAVAATVDAFGGLDILVNNASAIWL
                     RGTLDTPMKRFDLMQQVNARGSFLCAQACLPWLLQAPNPHILTLAPPPSLDPKWWAPH
                     TGYTLAKMGMSFVTLGLAAEFAAQGVAVNALWPRTIVATDALNMIPGVPLQRCRKPDI
                     VADAAHAVLVRPARAGTGGFLIDEEVLRAAGVTDFSQYAVDPAQPLLPDLFLD"
     gene            4785..5219
                     /locus_tag="VLM17_01890"
     CDS             4785..5219
                     /locus_tag="VLM17_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009607216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR64340.1"
                     /translation="MKYLHTMVRVRDLDASLRFYCDGLGLRETRRMENAGGRYTLVFL
                     AAAETPEAEIELTYNWPDPGGGTEDYGSARNFGHLAFRVDDVYALCAHLQAMGVTINR
                     PPRDGHMAFVRSPDLVSIELLQKGERLPPQEPWVSMPNTGAW"
     gene            5286..6512
                     /locus_tag="VLM17_01895"
     CDS             5286..6512
                     /locus_tag="VLM17_01895"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine/succinyldiaminopimelate
                     transaminase"
                     /protein_id="HSR64341.1"
                     /translation="MTADTETLLALADRYVLSVYRPRRIVLDHGRGSRVWDTDGREYV
                     DFGAGIAVNALGHAHPGLLQALSAQAARLWHTSNVFVSEPTLRLAEQLVLASRFARKV
                     FFCNSGAEANEAAIKLARRWAASGGRPPERRVILSFRGSFHGRTLAAVTATAQPKYQE
                     GYEPLPPGFRYSDFNDLAAAEAAMAAGDVCAVLVEPVQGEGGVMPADEAFLHGLRALC
                     DRHDALLVLDEIQCGMGRTGQLFACHDYGVVPDIVTLAKALGGGFPIGAMLVGAKAAD
                     TMQFGAHGTTFGGNPLATAVAGAALRELSSPALLANVARQSQALRDGLGAIERDLGLF
                     AEVRGRGLMLGAVLKPAHAGRAGEILDHAAAHGLLLLQAGPDVLRLVPALNIGDADIG
                     EGLARLRGALEAFAAG"
     gene            complement(6518..7651)
                     /locus_tag="VLM17_01900"
     CDS             complement(6518..7651)
                     /locus_tag="VLM17_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HSR64342.1"
                     /translation="MNTTTLHPATLAVHAGAEPDPETGAVAPPIHLSTTFRHGPAGER
                     IAGYEYQREGNPTQDRLEAALAALEGGAAALAYASGMAAITGLLECLPNGARALVPDD
                     CYSGLRYLCREFLPERGIDAVAVDMADLAAVERACAGGVALLWAETPSNPRMKISDVA
                     ALATLAHAHGALLACDNTFATPILQLPLALGADVVMHSTTKYFGGHSDVLGGALVFAR
                     RDAFQEKVAHRRHVTGAVLSPFSAWLTLRGCRSLPARMALHCANARRLADALAAHPAV
                     ERVNYPGLASHPGHAVAARQMHDFGGMLSVELAGGRERTLAIAGKLRLFANATSLGGC
                     ESLVEHRASVEGANAVSPQNLLRVSVGLEHVDDLVADWMQALG"
     gene            complement(7654..>8024)
                     /locus_tag="VLM17_01905"
     CDS             complement(7654..>8024)
                     /locus_tag="VLM17_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HSR64343.1"
                     /translation="AAGLAMLDLIQAPGFHDAIERATNALCDGLEAAARDAGVPFTTQ
                     RVGGMFGLFFSATPVDTYAQAVACDTAAFNRFFHAMLERGVYLAPSAFEAGFVSSAHG
                     EAEVERTLAAAREAFRIAKG"
BASE COUNT         1095 a         2941 c         2861 g         1127 t
ORIGIN      
        1 gaggtgcgag gccacgccgc cgagctgggt gtggccgaag gcatccttgc ccgcgccggc
       61 atccgcgacg aaacgtccgt cggccgtgcg gatgccttcg ctcgccacca cgacgcagta
      121 gccgatacgc ccgaccgtgg cgcgcacctt cgccaagaag tcggcttcgt cgaacggacg
      181 ctcggggaac aggatcaggt ggggcgcctc gtccggccct ccgccggcca gtcccgccgc
      241 ggccgccagc cagccggcat gccgccccat cgcctcgtac acgaacacct tggtcgaggt
      301 gtcggccatc gccgcgacgt cgagcgcgca ttcgcgcacc gacaccgcgg tgtacttcgc
      361 ggccgaaccg aaacccgggc agcagtcggt gaccgcgagg tcgttgtcga ccgtcttcgg
      421 cacgccgacg caggtcagcg gatagcccga agcctccgcc agccgcgaga tcttgagcgc
      481 ggtgtcggcc gaatcgttgc cgccgttgta gaggaaccag cgcacgtcgt gggcgcggaa
      541 caccgccagc aggcgctcgt acttcgcgcg gtcctcctcc agcgacttca gcttgacccg
      601 gcacgaaccg aacgcgccgc ccggcgtgtg cgcgagcgcg cgcagggtcg cgcgcgactc
      661 cttcgacgtg tcgatcagtt cctcgcgcag cacgccgagg atgccgttgc ggccggccag
      721 caccttcacg ccgcgggcac gggcggcctc gatcaccgcg gtggcggtgg cgttgatcac
      781 ggcggtcacg ccgccggact gtgcgtagag caggtttccg gtggccatgg cggggtcggc
      841 tcgacgggcg gatgcggtaa gctggcccgc cgccagcggc gcggcgggcc gggcgagtgt
      901 agccccggcc ggcggcgacg ccccgtgagc gcgcgatgcg cgccgggccg gggccttctt
      961 cctgcagctt ccggagttca gcgatgcgat tggttctgtt gggtgcgccg ggttccggca
     1021 agggcacgca ggcggcccgc ctgaaggagc acctgcaggt gccgcacatc tccaccgggg
     1081 acctgctgcg cgccgaagtc gccgccggca gcccgctggg cagcgcggcc aaggaagtga
     1141 tggcgcgcgg cgaactggtc tccgacgcga tcctgctcgg catgctcgag gaccgcttct
     1201 cgcgcccgga caccgcgcgc ggtttcatcc tcgacggcta cccgcgcaac ctcgcccagg
     1261 ccgacgccct cggccagctg ctggcgaaga tcggccaggg cttcgactat gccgtgcagc
     1321 tcgacgtgcc gaccgagctg ctggtcgagc gcatcgccgg ccgcgccaag gccgaaggcc
     1381 gcgccgacga cacgcccgaa tccgtgcgca cccggctgaa ggtctacaac gacgtgaccg
     1441 cgccggtcat cgagtactac cgccagcacg gccagctgac ggtggtcgat ggcgtcggct
     1501 cgctcgacga ggtgttcaac cgcatcgtcg aggcgatcgc gcccgaaaaa gcggtcgggt
     1561 gagtgttctg ctccctctcc cgcttgcggg agagggtcgg ggtgggggca ggccgtgctg
     1621 ggtccttcgg ctgcagtgcg ggcgacggcc cctcacccct tgccctctcc cgcagccggg
     1681 agagggggag tgattgccgt gcgggagtcg ctccgtcgcg tcacgtcgaa accgtaacgg
     1741 agcgtgggag cttgaagctt catattctgg gcctcgccgg caccttcatg ggcggcgtcg
     1801 ccgcgctcgc gcgcgaactc ggccacaccg tcgaaggcag cgaccaggcg gtgtacccgc
     1861 cgatgtccac gcagctggaa acgctcggca tcgccctgcg ccagggctac gcgcccgcca
     1921 acatctcgcc tgattgcgac atggtcgtgg tcggcaacgc gctctcgcgg ggcaatccgg
     1981 cggtggagca ggtgctcgac gacggtcgcg cctacacctc cggcgcgcaa tggctggccg
     2041 aacacgtgct gccgcgtcgc gacacgctgg cggtcgccgg cacccacggc aagacgacca
     2101 ccaccacgat cctgaccttc ctgttgcagg ccgcgggccg cgaacccggc ttcctgatcg
     2161 gcggcgtcgc cgaggatttc ggcgtgtccg cgcgcgtcgg ccagggtggc gagttcgtgg
     2221 tcgaggccga cgaatacgac accgcgttct tcgacaagcg cagcaagttc gtccactacc
     2281 ggccgctggt cgcgatcctc aacaacctcg agtacgacca cgccgacatc tttcccgacg
     2341 tggccgcgat ccagcgccag ttccaccacc tggtgcgcac cgtgccgcgg cgcgggcggc
     2401 tggtcgtcaa cggcgaggac gcgcgcctgg ccgaagtgct ggcgatgggc tgctggacgc
     2461 gggtcgagac gttcggcctc gatccgacgc tggtgcaacc gtccgcgcag gcactgggcc
     2521 acggcggcca tggcgacgat gcggtcgcag cgggcgccga cttccactgg accgcgcgcc
     2581 tgctcgccga ggacggcagc gcgttcgtgg tggtgcagga cgggcgcgag gtcggcgagg
     2641 tgcgctggcc gctgctcggc cgccacaacg tgatgaacgc gctcgccgcg ctcgccgccg
     2701 cgcacgcggt cggtgtcgac gtcgggtccg tgctgccggc gctggcgaac ttccgcagcg
     2761 tcaagcgccg cctggaggtc ctcggcgcgc gcggcggcat caccgtgtac gacgacttcg
     2821 cccaccatcc gaccgcgatc gcgaccacgc tcgccggact gcgcgcgaaa gtcggcgacg
     2881 cgcgcatcgt cgtcgcgatg gagccgcgca gcaactcgat gcgcctgggc gcgcacgccg
     2941 acgcgctcgc gccttcgctc gacggcgccg acgtcgtcgt cttcctgcac aagcccgagc
     3001 tcgcgtggga cgccggcagg gtggtcggcg cgctgcgcgg cgaaggcgtc accacgcccg
     3061 atgccgacat gctcatcgct gcgttgcggg cgcgcgtgcg cgacggcgac cacgtggtgt
     3121 tcatgtccaa cgggggcttc gacggcgcgc cgcggcgctt cctcgccacg ctctcggact
     3181 agggcgccgg gacgatgcac gtcgcgccgg acgatgcgca ggcgctgaaa gccgacagct
     3241 tcggccgcat cgacctgctg cgcgatgccg acggttcccc gttcgtgcgc cgcgacctgc
     3301 gccacgtgcc gtggtggctg cgaccgccgg cgtggtggct ggccagacgg gaggcgcgcg
     3361 cgctgcgttt ggtcgccggc atggccgacg tgccgcagct gctgcgctgg aacggccgcg
     3421 tgctcgatcg cagctacctc gacggcgtcg cgctgtacca gcgcccgccg cgcggcgacg
     3481 ccgcctggtt ccgcgacgcg catcgcctgc tgcgccagct gcaccggcgc ggcatcgccc
     3541 acaacgacct tgccaaggaa gccaactggc tggtgctggc cgacggccgc ccggccgtgg
     3601 tcgacttcca gctcgccgtg cacgggcatc cgcgcgcgcg ctggctgcgc ctgctcgcgc
     3661 gcgaggacct gcgccacctg ctcaagcaca agcgcaccta ttgccccggg gcgctgaccg
     3721 cggtggagcg gcgcctgctg cgccggcatt cgtgggtgcg cgacgcgtgg ttcgccaccg
     3781 gcaagccggt ctatcgcgtg ctgacccggc ggatcctccg ctgggaggac aacgaggggc
     3841 aggggccgaa gccctagccc tccatacgcc tgcgaatgct aggctcgcgc cacgcccttg
     3901 cgagccccgt ccatgaccct gtccggcaag accctcttca tcaccggcgc ctcgcgcggc
     3961 atcggtcgcg ccatcgcgct gcgcgccgcg cgcgacggcg ccaatgtcgc catcgtggcg
     4021 aaatccgcgg tcgccaaccc gaagctgccg ggcaccatcc acagcgtcgc ggccgaagtc
     4081 gaggccgctg gtggccgcgc gctggccctg cagtgcgaca tccgcgagga ggaccaggtc
     4141 caggccgcgg tcgccgccac cgtcgacgcc ttcggcggcc tcgacatcct ggtcaacaac
     4201 gccagcgcga tctggctgcg cggcacgctc gacacgccga tgaagcgctt cgacctgatg
     4261 cagcaggtca acgcgcgcgg cagcttcctg tgcgcgcagg cctgcctgcc gtggctgctg
     4321 caggcgccca atccgcacat cctcaccctc gcgccgccgc cgtcgctgga cccgaagtgg
     4381 tgggcgccgc atacgggcta cacgctggcg aagatgggca tgagcttcgt gacgctgggg
     4441 ctcgccgccg agttcgccgc acagggggtg gcggtcaacg cattgtggcc gcgcaccatc
     4501 gtcgccaccg acgcgctcaa catgatcccg ggcgtgccgc tgcagcgctg ccggaagccg
     4561 gacatcgtcg ccgatgccgc ccacgccgtg ctcgtgcgcc cggcgcgcgc cggcacgggc
     4621 gggttcctga tcgacgaaga ggtgctgcgc gcggccggcg tcaccgattt ttcgcagtac
     4681 gcggtggatc ctgcgcagcc gctgctgccg gacctgttcc tcgactgagc agccctgccc
     4741 gcgaaagcgg gtccggttcc cgggccgcct ggcgaagacc cacgatgaaa tacctgcaca
     4801 cgatggtccg ggtccgcgac ctggacgcct cgctccgctt ctactgcgac ggcctcggcc
     4861 tgcgcgagac gaggcgcatg gaaaacgcgg gcggccgcta cacgctggtg ttcctcgccg
     4921 ccgccgagac gccggaggcc gagatcgaac tcacgtacaa ctggcccgac cccggcggcg
     4981 gcaccgagga ctacggcagc gcgcgcaact tcggccacct cgccttccgc gtcgacgacg
     5041 tctacgcgct gtgcgcgcac ctgcaggcga tgggcgtcac catcaaccgt ccgccccgcg
     5101 acggccacat ggccttcgta cgctcgcccg acctcgtctc gatcgaactg ctgcagaagg
     5161 gcgaacggtt gccgccgcag gagccgtggg tgtcgatgcc gaacaccggc gcctggtgag
     5221 ggcgcgcggt gtgcggggcc tgacgggcgc gcgataatcg cggccccgcc gcatccacca
     5281 cgccgatgac cgccgatacc gagacgctgc tcgcgctcgc cgaccgctac gtcctgtccg
     5341 tctaccgccc gcgccgcatc gtcctcgacc acgggcgcgg gtcgcgcgtc tgggacaccg
     5401 acggtcgcga gtacgtcgac ttcggcgccg gcatcgcggt caacgcgctc gggcatgcgc
     5461 atccgggctt gctgcaggcg ctgtccgcgc aggccgccag gctctggcac accagcaacg
     5521 tgttcgtgag cgagccgacg ctgcgcctgg cggaacagct ggtgctggcc tcgcggtttg
     5581 cgcggaaagt cttcttctgc aactccggcg cggaggccaa cgaggccgcg atcaagctcg
     5641 ctcgcaggtg ggcggcgtcc gggggccgcc cgccggagcg acgcgtgatc ctgagcttcc
     5701 gcggcagctt ccacggccgc acgctggccg ccgtgaccgc caccgcgcag ccgaagtacc
     5761 aggaaggcta tgagccgctg ccgcccggtt tccgctacag cgacttcaac gacctggccg
     5821 cggccgaggc ggcgatggct gccggcgacg tgtgcgcggt gctggtcgag ccggtgcagg
     5881 gcgagggtgg cgtgatgccg gcggacgagg cgttcctgca cggcctgcgc gcgctgtgcg
     5941 accgccacga cgccctgctc gtgctcgacg agatccagtg cggcatgggg cgcaccgggc
     6001 agctgttcgc gtgccacgac tacggcgtgg tcccggacat cgtgacgctg gccaaggcgc
     6061 tgggcggcgg cttcccgatc ggcgccatgc tggtcggcgc gaaggcggcc gacacgatgc
     6121 agttcggcgc gcacggcacc accttcggcg gcaatccgct cgccaccgcc gtcgccggcg
     6181 ccgcgttgcg cgagctgtcg tcgcccgcgc tgctcgccaa cgtcgcgcgg cagtcgcagg
     6241 cgctgcgcga cgggctcgga gcgatcgagc gcgacctcgg gttgttcgcg gaagtgcgcg
     6301 ggcgcggcct gatgctgggc gccgtcctga aacccgccca cgccgggcgc gccggcgaga
     6361 tcctcgacca cgccgccgcc cacggcctgt tgctgctgca ggccggtccc gacgtgctgc
     6421 gcctggtgcc ggcgctgaac atcggcgacg ccgacatcgg cgaggggttg gcgcgcctgc
     6481 gcggcgcgct ggaagcgttc gccgccggct gagcggctca gcccaacgcc tgcatccagt
     6541 cggcgaccag gtcgtcgacg tgttccagtc cgaccgacac ccgcagcagg ttctgcggcg
     6601 acaccgcgtt ggccccttcc accgatgcgc ggtgttcgac cagcgattcg cagccgccga
     6661 gcgaggtcgc attggcgaac aggcgcagct tgccggcgat cgccagcgtg cgctcgcgac
     6721 cgcccgcgag ttccaccgac agcatgccgc cgaaatcgtg catctggcgc gcggcgacgg
     6781 catggcccgg gtggctcgcc agccccggat aattcacccg ctcgaccgcc gggtgcgcgg
     6841 cgagggcatc cgccagccgt cgcgcgttcg cgcaatgcag cgccatccgc gccggcagcg
     6901 agcggcagcc gcgcagggtc agccatgcac tgaacggcga cagcaccgcg ccggtgacgt
     6961 ggcggcggtg cgcgaccttc tcctggaacg cgtcgcgccg cgcgaacacc agcgcgccgc
     7021 cgagcacgtc gctgtggccg ccgaagtact tggtggtcga atgcatcacc acatccgcac
     7081 ccagcgccag cggcagctgc aggatcgggg tggcgaaggt gttgtcgcac gccagcagcg
     7141 cgccatgggc gtgcgcgagc gtcgccagcg cggcgacgtc gctgatcttc atgcgcggat
     7201 tggacggtgt ctccgcccac agcagggcga cgccgccggc acaggcgcgc tcgactgcgg
     7261 cgaggtcggc catgtcgacc gccacggcgt cgatgccgcg ctcgggcagg aattcccggc
     7321 acaggtagcg caggccgctg tagcagtcgt ccggcaccag cgcgcgcgcg ccgttgggca
     7381 ggcattccag caggccggtg atcgccgcca tgccggacgc gtaggccagc gcggccgcgc
     7441 cgccttccag tgccgccagt gcggcttcca ggcggtcctg ggtcgggttg ccctcgcgct
     7501 ggtattcgta gccggcgatg cgttcgcccg ccggcccgtg ccggaaggtc gtcgacaggt
     7561 ggatcggggg tgcgacggcg ccggtttccg ggtcgggctc ggcgccggca tgcacggcga
     7621 gcgtcgcggg atggagggtg gtcgtgttca tcgtcagccc ttggcgatcc ggaaggcttc
     7681 gcgcgccgcc gcgagcgtcc tctcgacttc cgcctcgccg tgcgcgctgg aaacgaagcc
     7741 ggcctcgaac gccgacggcg ccagatagac gccgcgctcc agcatggcgt ggaagaagcg
     7801 gttgaacgca gcggtgtcgc aggcgaccgc ctgcgcatag gtgtcgaccg gcgtcgcgct
     7861 gaagaacagg ccgaacatgc cgcccacgcg ctgcgtggtg aacggcacgc cggcgtcgcg
     7921 cgcggccgct tcgaggccgt cgcacagcgc gttggtggcg cgctcgatgg cgtcgtggaa
     7981 gccgggcgcc tggatcaggt ccagcatcgc cagccccgcc gcca
//
LOCUS       DATIQC010000088         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_641690, whole genome shotgun sequence.
ACCESSION   DATIQC010000088 DATIQC010000000
VERSION     DATIQC010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641690"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1021)
                     /locus_tag="VLM17_01910"
     CDS             complement(<1..1021)
                     /locus_tag="VLM17_01910"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HSR64344.1"
                     /translation="MNAVPADLLRQTEQLSDAVTRPIPGSRKVHVEGSRADLRVPMRE
                     IALTKTPTLFGGEDNPPVTVYDTSGPYTDPDARIDLGAGLPALRARWIAERGDTEQLA
                     AISSSFGRARETDPKLAAVRFPGRVLPRRAMAGANVSQMHYARRGIVTPEMEFVAIRE
                     NQRLEAVRDAGLLAQHPGQAFGASIQKIITPEFVRDEIARGRAILPNNLNHPESEPMV
                     IGRNFLVKINANIGNSAVSSSIHEEVEKMTWATRWGADTIMDLSTGKSIHETREWILR
                     NAPTPLGTVPIYQALEKVKGRPEKLDIDVFMETLVEQAEQGVDYFTIHAGVLLRYVPL
                     TAKRVT"
     gene            complement(1340..>2675)
                     /locus_tag="VLM17_01915"
     CDS             complement(1340..>2675)
                     /locus_tag="VLM17_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR64345.1"
                     /translation="KKLEAMLRRREGVDNFVAYVGTGSPRFYLPLDQQLPATNFAQFV
                     VRADDTEAREALRDWLIRDVAPRFPQLQLRVTRLENGPPVGYPIQFRVSGEHLDRVRA
                     VARKVEAKVRANPHVANVNLDWDEPSKVVRLTIDQDRARALGVSSEAVAHFLAGSLSG
                     LHVSTYREGNELVEMLLRGSDVDRDRLDLLGSLAVPTASGQSVPLAQIARLEPGFEEG
                     IVWHRDRLPTVTVRADLRDALQPATVAAQIAPTLDAIRASLPEGYLLETGGTVEDSAR
                     GQDSIVAGMPLFLFVVVTLLMLQLRSFPRVALVLLTAPLGLIGVTLFLLVFRVPFGFV
                     AMLGTIALAGMIMRNSVILVDQIEHDIAAGQDRWTAVVDATVRRFRPIVLTALAAILA
                     MIPLSRSAFFGPMAVAIMGGLTVATALTLLFLPALYAAWFRVRPDEPRQAGA"
BASE COUNT          393 a          907 c          985 g          390 t
ORIGIN      
        1 cggtcacgcg cttcgccgtc agcggcacgt accgcagcag cactccggcg tggatcgtga
       61 agtagtcgac gccctgctcc gcctgctcga cgagcgtctc catgaacacg tcgatgtcga
      121 gcttctccgg ccgccccttg accttctcga gcgcctggta gatcggcacg gtgccgagcg
      181 gcgtcggcgc gttgcgcagg atccactccc gcgtctcgtg gatgctcttg cccgtcgaca
      241 ggtccatgat cgtgtcggcg ccccagcgcg tcgcccacgt catcttctcg acctcctcgt
      301 ggatcgacga cgacaccgcc gagttgccga tgttggcgtt gatcttcacg aggaagttgc
      361 ggccgatgac catcggctcg ctttccgggt ggttgaggtt gttcggcagg atggcgcggc
      421 cgcgcgcgat ttcgtcgcgg acgaattccg gcgtgatgat cttctggatg ctggcgccga
      481 acgcctgccc cgggtgctgc gccagcaggc cggcgtcgcg caccgcctcc aggcgctggt
      541 tctcgcggat cgcgacgaac tccatctccg gggtgacgat gccgcggcgc gcgtagtgca
      601 tctggctgac gttggcgccg gccatcgcgc ggcgcggcag cacgcggccg gggaaacgca
      661 cggcggccag cttcggatcg gtttcgcgcg cgcggccgaa actcgagctg atcgcggcga
      721 gctgctcggt atcgccgcgc tcggcgatcc agcgcgcgcg cagcgccggc agccccgcgc
      781 cgaggtcgat gcgggcatcc gggtcggtgt acggaccgga cgtgtcgtag acggtgaccg
      841 gcgggttgtc ctcgccgccg aacagcgtcg gcgtcttcgt cagcgcgatc tcgcgcatgg
      901 gcacgcgcag gtcggcgcgg gaaccttcga catggacctt gcgcgagccg ggaatcgggc
      961 gggtcaccgc gtccgagagc tgctcggtct ggcggaggag gtcggcgggc acggcattca
     1021 tcggcatcgt cctgtgtgga ggtccgcacg tgtgcgggcg cttgcggaag catccgcgtg
     1081 cggggacgaa gcggcggcgc gcggacgacg gcgcgcccgg cgaagctccc tacggcggtc
     1141 tcaacctgct ctgacgagca cgcccaggtt cgaagggtct gtctcaaccg gcgccgctcc
     1201 caccgggaac gctgccggta cccccgcttc gggtgctatt gcaccacgcg gcggtgatgg
     1261 aggccagaag atcgcgtgcc gggccgcccg aggccgggag ggggaaggga gccgtcggac
     1321 ggcccggacg cgaaaacggt caggcgccag cctgtcgggg ttcgtcgggg cggacgcgga
     1381 accaggccgc gtacagcgcc ggcaggaaca gcagggtcaa tgcggtggcc acggtcagcc
     1441 cgcccatgat cgccaccgcc atcggcccga agaacgcgct gcgcgacaac gggatcatcg
     1501 cgaggatcgc cgcgagcgcg gtcagcacga tcggccggaa gcggcgcacg gtggcgtcga
     1561 ccaccgcggt ccagcggtcc tggccggcgg cgatgtcgtg ctcgatctgg tcgaccagga
     1621 tgaccgagtt gcgcatgatc atgcccgcca gcgcgatcgt gccgagcatg gcgacgaagc
     1681 cgaacggcac ccggaacacc agcaggaaca gcgtcacccc gatcagcccg agcggcgcgg
     1741 tcagcagcac cagggccacg cgcgggaagc tgcgcagctg cagcatcagc agggtcacca
     1801 ccacgaacag gaacagcggc atgccggcga cgatcgagtc ctgcccgcgc gccgaatcct
     1861 cgaccgtgcc gccggtctcc agcaggtagc cctccggcaa cgaggcccgg atggcgtcga
     1921 gggtgggcgc gatctgcgcg gcgacggtgg ccggctgcag cgcatcgcgg aggtcggcgc
     1981 gcaccgtcac cgtcggcagg cggtcgcggt gccagacgat gccttcctcg aaaccgggct
     2041 cgaggcgggc gatctgcgcc agcggcaccg actgcccgct cgcggtcggc accgcgaggc
     2101 tgccgagcag gtcgagccgg tcgcggtcga cgtcggagcc gcgcagcagc atctcgacca
     2161 gctcgttgcc ttcgcggtag gtgctgacgt gcaggccgga gagcgaaccg gccaggaagt
     2221 gggcgaccgc ttccgagctg acgccgagcg cgcgggcgcg gtcctggtcg atggtcaggc
     2281 gcacgacctt gctcggttcg tcccagtcga ggttgacgtt ggcgacgtgc gggttcgcgc
     2341 gcaccttcgc ctcgaccttg cgggcgaccg cgcgcacgcg gtcgaggtgc tcgccggaca
     2401 cgcggaactg gatcgggtag ccgaccggcg ggccgttttc caggcgggtg acgcgcagct
     2461 gcagttgcgg gaaacgcggc gcgacgtcgc gaatcagcca gtcgcgcagg gcctcgcgcg
     2521 cctcggtgtc gtcggcgcgt accacgaact gggcgaagtt ggtcgccggc agctgctggt
     2581 ccagcggcag gtagaagcgc ggggaaccgg tgccgacgta agcgacgaaa ttgtcgacgc
     2641 cttcgcgcct gcgcagcatc gcttccagtt tcttc
//
LOCUS       DATIQC010000089         3388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_323778, whole genome shotgun sequence.
ACCESSION   DATIQC010000089 DATIQC010000000
VERSION     DATIQC010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323778"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VLM17_01920"
     CDS             <1..352
                     /locus_tag="VLM17_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="6-phosphogluconate dehydrogenase"
                     /protein_id="HSR64346.1"
                     /translation="AYAEGFSILQHKEEFALDLHQVAEIWRHGSVVRSWLLDLTADAL
                     GRNPGMDGIAPWVADSGEGRWTLQEAIDLDVPAPVIALSLIARLRSRDNESFADKLLA
                     AMRNEFGGHAIRKE"
     gene            complement(390..605)
                     /locus_tag="VLM17_01925"
     CDS             complement(390..605)
                     /locus_tag="VLM17_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008437680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2945 domain-containing protein"
                     /protein_id="HSR64347.1"
                     /translation="MATPRFRVGDHVAWNSEAGHVSGRITKVHTRDFEWKGYTRHCSA
                     DDPQYEIRSDRSEHVAMHRGGALHRVG"
     gene            complement(605..2674)
                     /gene="tkt"
                     /locus_tag="VLM17_01930"
     CDS             complement(605..2674)
                     /gene="tkt"
                     /locus_tag="VLM17_01930"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008439433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HSR64348.1"
                     /translation="MSAQLDQRCIDTLRFLAVDMVQKADSGHPGMPLGAMPMAYVLWD
                     RFLRHSPANPGWTDRDRFVLSAGHGSALLYALLHGTGYDLSLDDLRQFRQWGSRTPGH
                     PERGHTPGVEVTTGPLGQGLANAVGLAMAEAQLAARYNRPGHAIIDHRTFVIASDGDL
                     MEGVASEAASLAGHLGLGKLVCLYDDNYVTLAAGTDITFTEDRGRRFEAYGWHVQHVA
                     DGNDLDALEEALRVACIEQGRPSLIVVRTHLGYGSPEQDSYKAHGSPLGEEGVRRTKE
                     TLGWPTSPAFLEPDEALAHLRGAVERGRQREADWNDRFAAYAREHQALAAELERSLHG
                     ALPEGWDVDVPVFPADAKGMATREASGKVMNAIAPKLPALTGGSADLDPSTKTALKDL
                     GDFNPPPPEGEDTQGSAGGGWSYAGRNLHFGVREHAMGAIANGMAAHSGCIPYTATFL
                     IFSDYMRPPMRLAALSRLHVVHVFTHDSVALGEDGPTHQPIEQLAGLRAIPDLTVIRP
                     ADANETAEAWRVALEAREQPVTLVLTRQAVPTLDRGRYAAASGLRRGAYVLDGGDAPE
                     PRLVLIASGSEVHLVTEAAQRLRETGLGVRCVSMPSWELFDAQPREYRDSVLPPTVRA
                     RLAVEAGATQGWWRYVGDAGDVLGLDRFGASAPGEVNLREFGFTVDEVCRRAQALLSS
                     ATAEARG"
     gene            complement(2729..>3388)
                     /gene="pgi"
                     /locus_tag="VLM17_01935"
     CDS             complement(2729..>3388)
                     /gene="pgi"
                     /locus_tag="VLM17_01935"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462069.1"
                     /note="functions in sugar metabolism in glycolysis and the
                     Embden-Meyerhof pathways (EMP) and in gluconeogenesis;
                     catalyzes reversible isomerization of glucose-6-phosphate
                     to fructose-6-phosphate; member of PGI family; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HSR64349.1"
                     /translation="LGAATLAVLPYAQSLKRFPAYLQQLQMESKGKHVTREGHRVDYE
                     TGPVVWGEPGTNGQHSFYQLIHQGTRLVPCDFIGFCQPLNAFHRQHDLLMANLFAQGE
                     ALAFGRTAAEVRAEGTDDALVPHRTFEGNRPSSTILADRLTPHALGALVALYEHSVFV
                     QGVVWDIDSFDQWGVELGKVLAKTTAGELEGNPMPPLAHDSSTNALIRRYRERRGDAG
                     A"
BASE COUNT          443 a         1193 c         1233 g          519 t
ORIGIN      
        1 ggcgtatgcg gagggcttct cgatcctgca gcacaaggag gagttcgcgc tcgacctgca
       61 ccaggtcgcc gagatctggc gccatggcag cgtggtccgt tcctggctgc tggacctgac
      121 cgccgacgcg ctcggcagga accccggcat ggacggcatc gcgccgtggg tggcggattc
      181 gggcgaaggc cgctggacgc tgcaggaggc gatcgacctc gacgtgcccg cgccggtgat
      241 cgcactgtcg ctgatcgccc gcctgcgctc gcgcgacaac gagtccttcg ccgacaagct
      301 gctcgcggcg atgcgcaacg agttcggcgg gcacgcgatc cggaaggaat gagcgaccgg
      361 ggccgcgccg gtctcccgac gaaggttcct cacccgaccc ggtgcagcgc cccgccccgg
      421 tgcatcgcca cgtgctcgct cctgtcgctg cggatctcgt actgcgggtc gtcggcgctg
      481 cagtgccggg tgtagccctt ccactcgaag tcgcgggtgt gcaccttcgt gatcctgccg
      541 ctgacgtggc cggcctcgga attccaggcc acgtggtcgc cgaccctgaa gcgcggcgtg
      601 gccatcagcc ccgcgcctcc gccgtcgccg acgacagcag cgcctgcgcg cgccggcaga
      661 cctcgtcgac ggtgaagccg aactcgcgca ggttgacctc gccgggggcg gaggcgccga
      721 agcggtcgag gccgagcacg tcgcccgcgt cgccgacata gcgccaccag ccctgggtcg
      781 cgcccgcctc caccgccagg cgcgcgcgca ccgtcggtgg gagcacgctg tcgcggtatt
      841 cgcgcggctg cgcgtcgaac agctcccagc tcggcatcga cacgcagcgc acgcccagcc
      901 ccgtctcgcg caggcgctgc gcggcctcgg tgacgaggtg cacctccgaa ccggacgcga
      961 tcaggaccag ccgcggttcc ggcgcgtcgc cgccgtcgag cacgtaggcg ccgcggcgca
     1021 ggccgctcgc cgcggcgtaa cggccgcggt ccagcgtcgg caccgcctgg cgggttagca
     1081 ccagcgtcac cggctgttcg cgcgcctcca gcgccacgcg ccaggcttcc gcggtttcgt
     1141 tggcgtcggc cgggcggatc acggtgaggt ccgggatcgc gcgcaggccg gcgagctgct
     1201 cgatgggctg gtgcgtcggg ccgtcctcgc cgagcgcgac gctgtcgtgg gtgaacacgt
     1261 ggacgacgtg caggcgcgag agcgcagcca gccgcatcgg cgggcgcatg tagtccgaga
     1321 agatcaggaa ggtcgcggtg tagggaatgc agcccgagtg cgcggccatg ccgttggcga
     1381 tcgcgcccat cgcatgctcg cgcacgccga agtggaggtt gcggcccgcg tagctccagc
     1441 cgccgcctgc ggagccctgt gtgtcctcgc cttcgggcgg cggcggattg aagtcgccga
     1501 ggtccttcag cgccgtcttg gtcgaggggt cgaggtcggc cgagccaccg gtcagcgcgg
     1561 gcagcttcgg cgcgatcgcg ttcatcacct tgcccgacgc ctcgcgcgtg gccatgcctt
     1621 tcgcgtcggc cgggaagacc ggcacgtcca cgtcccatcc ctccggcagc gcgccgtgca
     1681 ggctgcgctc gagctcggcg gcgagcgcct ggtgctcgcg cgcataggcg gcgaagcggt
     1741 cgttccagtc ggcctcccgc tgcctgccgc gctcgaccgc cccgcgcagg tgcgccagtg
     1801 cctcgtcggg ttcgaggaag gcgggcgacg tcggccagcc gagggtttcc ttggtcctgc
     1861 gcacgccctc ctcgcccagc ggcgaaccgt gcgccttgta gctgtcctgc tcgggggagc
     1921 cgtacccgag gtgcgtgcgc accacgatca gcgagggcct tccctgttcg atgcatgcga
     1981 cgcgcaacgc ctcttcgagc gcgtccaggt cgttgccgtc ggccacgtgc tgcacgtgcc
     2041 agccgtaggc ctcgaagcgc ctgccgcgat cctcggtgaa cgtgatgtcg gtgccggcgg
     2101 cgagggtcac gtagttgtcg tcgtacaggc acaccagctt gccgagcccg aggtgcccgg
     2161 caagcgaggc cgcctccgac gcgacgccct ccatcaggtc gccgtcgctg gcgatgacga
     2221 aggtgcggtg gtcgatgatg gcgtgccccg gccggttgta gcgcgcggcg agctgagctt
     2281 cggccatcgc cagcccgacc gcgttggcga ggccctggcc cagcggcccg gtggtgactt
     2341 ccacgcccgg cgtgtgtccg cgctcgggat gtcccggggt gcggctgccc cactggcgga
     2401 actgcctgag gtcgtcgagc gacaggtcgt agccggtccc atgcagcagc gcgtacagca
     2461 gcgccgaacc gtggccggcg gagagcacga agcggtcgcg gtcggtccag ccgggattgg
     2521 ccgggctgtg gcgcaggaag cgatcccaca gcacgtaggc catcggcatg gcgccgagcg
     2581 gcatgccggg atggccgctg tccgccttct gcaccatgtc caccgcgagg aaccgcaggg
     2641 tgtcgatgca gcgctggtcg agttgtgcgg acatggccgg ctccttgcgg atggtgggac
     2701 gtcccccggc gcccggttgc cttgcgtgct acgcgccggc gtctccccgg cgttcgcggt
     2761 aacgccggat cagcgcattg gtcgagctgt cgtgcgcgag aggcggcatc ggattgccct
     2821 ccagttcgcc ggcggtcgtc ttcgccagca ccttgccgag ctcgacgccc cactggtcga
     2881 agctgtcgat gtcccagacg acgccctgca cgaacacgct gtgctcgtac agcgcgacca
     2941 gcgcgccgag cgcgtgcggc gtgagccggt cggcgaggat cgtgctgctc ggccggttgc
     3001 cctcgaaggt gcgatggggc accagcgcat cgtccgtgcc ttccgcgcgc acttccgcgg
     3061 ccgtcctgcc gaacgcgagc gcctcgccct gcgcgaacag gttggccatc agcaggtcgt
     3121 gctggcggtg gaaggcattg agcggctggc agaagccgat gaagtcgcag ggcacgaggc
     3181 gcgtgccctg gtggatcagc tggtagaacg aatgctggcc gttggtgcca ggttcgcccc
     3241 acacgaccgg cccggtctcg tagtcgacgc gatggccttc gcgggtgaca tgcttgcctt
     3301 tgctctccat ctgcagctgc tgcaggtagg ccgggaaacg cttgagggac tgcgcatagg
     3361 gcagcaccgc gagggtggcc gcgccgag
//
LOCUS       DATIQC010000090         9604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_182684, whole genome shotgun sequence.
ACCESSION   DATIQC010000090 DATIQC010000000
VERSION     DATIQC010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9604
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182684"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /locus_tag="VLM17_01940"
     CDS             <1..821
                     /locus_tag="VLM17_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003477113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HSR64350.1"
                     /translation="FGIRYKGRPVAGYGVVVPRIGASITRYGTAVLRQFELMGTYTPN
                     TSDAILKARDKLRCHQLLAAQGIGLPDTVFGDNPDDTADLLSLLGPPPHVIKLNEGTQ
                     GTGVMLTEKPSASRSVIEALRGLYANFLVQEFIAEAKGADLRCFVVGGEVVAAMRRQA
                     AKGEFRSNLHRGGSARPVRPTEAEAAVAVRAAAVLGLGVAGVDLIRSRRGPLVLEVNS
                     SPGLEGIEEATGVDVAGRIIEHVVAAGSPPGPRRPAVRLALPPALARPAPRLRA"
     gene            1095..1781
                     /locus_tag="VLM17_01945"
     CDS             1095..1781
                     /locus_tag="VLM17_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64351.1"
                     /translation="MRILVIEDNSDIAANLGDYLEDRGHTVDFAADGITGLHLAVVND
                     FDAVVLDLSLPGMDGLEVCRKLRNEARKQTPVLMLTARDSLENKLAGFDSGADDYLIK
                     PFALQEVEVRLNALARRGKGVQTRVLEVADLEYNLDTLEVRRGGKLLQLNPTALKILQ
                     ALMEASPAVVTRQELETRVWGEELPDSDSLRVHIHGLRQVVDKPFPTQLIQTRHGIGY
                     RIAAPEPAAT"
     gene            1801..3132
                     /locus_tag="VLM17_01950"
     CDS             1801..3132
                     /locus_tag="VLM17_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012481104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR64352.1"
                     /translation="MTQPLLTAPARRKPTRYRRRLRSRIVLSFLLLGFGLTLLLAFAT
                     NWARGRVENQLVEDVMNRNIDEYARRYYADPSRNPAVPVEQIRAFAFSADKFDRVRHE
                     RPEWAELPDGIYGMNGVDEGGTPFSYKLAVRKTPEAWFFLAYDMTQSLRGEKQFNNAL
                     IGVVIVFTALSLLVGWWAASRVMSPVSELAQRLRRSGRSSQPEALASHFADDEVGQLA
                     SALDDYAVRLTEVVQRDREFNADVSHELRTPLAVIKGAIELLLARPDLDEKTKSRLLR
                     IRRAEQQCTDLISALLLLSRNERGHGAADVARIAGQLLDAHRAQLGGKPLELRLEGEH
                     RLVVDAPEAAVAVALGNLVGNAVKYTTEGEVVVRLLGQAVEVVDTGPGLSAEDAARLF
                     ERGYRGTHAEHSQGGGIGLSIVRRLCALYGWTVRVVPGADRGVVATLAFGG"
     gene            complement(3198..4109)
                     /locus_tag="VLM17_01955"
     CDS             complement(3198..4109)
                     /locus_tag="VLM17_01955"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HSR64353.1"
                     /translation="MRYPDWIWHNGTIKPWAEATTHVMAHALHYGSSVFEGIRSYETP
                     DGPAIFRLSDHNRRLFASARIYDMEMPYGLEELNAACREVLKANALTKAYLRPVAFRG
                     LGGFGLSADTPTDVAVAAWQMGAYLGDDVLERGIDACVSSWQRFAPNTIPAGAKAGGN
                     YLSGQLVAREARRLGFGEGIALASTGLLSEGAGENLFLVFDGALHTTPVSAALLNGIT
                     RNTLMTLARDNGIAVVERDLPREYLYLCDELFMCGTAAEITPIRSVDGRQVGSGQPGP
                     MTRRMQDLFFGLFDGRVADRYGWLERV"
     gene            complement(4201..4734)
                     /locus_tag="VLM17_01960"
     CDS             complement(4201..4734)
                     /locus_tag="VLM17_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64354.1"
                     /translation="MRPPFASRALLALSCLVALPAPAQVRHCTTPAGIDVYTDRRCEE
                     LGAAPAPARPVQPANDSAYRGGCARTLRDLAFALQSAIEGHDANRLADSYLWAGLSTR
                     DGYAVMERLAAIAQRPLAGIVPVYPAGDEAQLYPQETVRQAPVALRLQQTLRNGATPA
                     DTVLPLRRYLGCWWISF"
     gene            complement(4800..5510)
                     /locus_tag="VLM17_01965"
     CDS             complement(4800..5510)
                     /locus_tag="VLM17_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64355.1"
                     /translation="MQGRHPRTRMLAVAGLAGVLSLGSAPALPASGDPSDAPAIVGHC
                     TAGDGGSVYTDKPCTLIGAQPAPMSSSLVARLASDRHVALQADASAPAPVTLEDAAPS
                     AAGAPGRRATASGCARSPQQLAVDLRGSLALGDVNRLAESYHWVGMSYRQGQRTLDRL
                     AHLLGRQALDSRYYAAQIASLSDDGMAGAGDGRGGDGGILQVVLAGRGAPSVVEFDVH
                     RYAGCYFVSFQQAGATIA"
     gene            complement(5595..6425)
                     /gene="metF"
                     /locus_tag="VLM17_01970"
     CDS             complement(5595..6425)
                     /gene="metF"
                     /locus_tag="VLM17_01970"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HSR64356.1"
                     /translation="MALVPISFEFYPPKTDEQRAQLDRTARRLREEAPQYVSCTFGAG
                     GSTLSYTPETVRHLREAHALEAAPHLSCMGGTRDEIRQLLKLYRALGCRRLVALRGDL
                     PSGMARMGDFRFASDLVAFIREEHGDWFQVEVGCYPEMHPQAEDAFADLRHFKAKVDA
                     GANGAITQYFYNADAYFRFVDDARRLGIDIPVVPGIMPISNFSQLRRFSEACGAEIPR
                     WIGKRMQAYGDDVDAIRDFAADFVADLCRRLVAGGAPGLHFYTLNLSKPTLNVLQRVR
                     "
     gene            complement(6575..7996)
                     /gene="ahcY"
                     /locus_tag="VLM17_01975"
     CDS             complement(6575..7996)
                     /gene="ahcY"
                     /locus_tag="VLM17_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HSR64357.1"
                     /translation="MNAQARPAHDYKVADISLADWGRKEIEIAEHEMPGLMSIRRKHA
                     AAKPLKGVRVTGSLHMTIQTAVLIETLKDVGADVRWASCNIFSTQDHAAAAIAATGTP
                     VFAWKGETLEEYWDCTLDAVTFPGGKGPELVVDDGGDVTLLIHKGYELEQGSKWVDEP
                     SSSHEEQIIKNLLKRVARERPGFWTSVVADWKGVSEETTTGVHRLYQIAEQGKLLVPA
                     INVNDSVTKSKFDNLYGCRESLADGLKRAMDVMLAGKVAVVCGYGDVGKGSAHSLRAY
                     GARVVVTEIDPICALQAAMEGFEVNTIESTLGRADIYVTTTGNKDVITLQHMQQMKDQ
                     AIVCNIGHFDNEIQVDALNDSGAQRINIKPQVDKYVFGNGNAIFLLAEGRLVNLGCAT
                     GHPSFVMSNSFSNQTLAQIDLWQHKDDYEKTVYRLPKQLDEEVARLHLEKIGVKLTKL
                     TRDQADYLGVAVEGPYKPDHYRY"
     regulatory      complement(8043..8138)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01057"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="S-adenosyl-L-homocysteine riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="S-adenosyl-L-homocysteine"
                     /db_xref="RFAM:RF01057"
     gene            complement(8189..9412)
                     /gene="metK"
                     /locus_tag="VLM17_01980"
     CDS             complement(8189..9412)
                     /gene="metK"
                     /locus_tag="VLM17_01980"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004083625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HSR64358.1"
                     /translation="MTASSYLFTSESVSEGHPDKVADQISDAVLDALLARDKGARVAC
                     ETMVKTGVAIVAGEITTNAWIDLEALTRKVILDIGYDSSDVGFDGATCGVLNLIGKQS
                     PHIAAGVDRKKPEEQGAGDQGLMFGYACNEAPEFMPAPIYYAHRLVEQQAKIRKKKNS
                     PLPWLRPDAKSQVTLRYADDKVAGLDAVVLSTQHDPSVKYKDLVEGVYEHILRPVLPK
                     AWLEGLSKKKIHINPTGIFEIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSK
                     VDRSAAYAARYVAKNVVAAGLADKCEVQVSYAIGVAEPTSISVTTFGTGKIPDAQIEK
                     LIRKHFDLRPYGIVKMLDLIHPIYLSTASYGHFGRKPKEVVYTDAGGKQQTATAFSWE
                     KTDKAEELRADAKLK"
     gene            complement(9409..>9604)
                     /locus_tag="VLM17_01985"
     CDS             complement(9409..>9604)
                     /locus_tag="VLM17_01985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64359.1"
                     /translation="PRCNGSGARALRPMESGRPHRRPSGGACSALQNLNAIGRTMRGS
                     GRGGMMRGHPFIRIKGYISR"
BASE COUNT         1352 a         3291 c         3470 g         1491 t
ORIGIN      
        1 gcttcggcat ccgctacaag ggccgtccgg tcgccggcta cggcgtggtg gtgccgcgca
       61 tcggcgcgtc gatcacccgc tacggcaccg cggtgctgcg ccagttcgag ctgatgggca
      121 cctacacgcc gaacacgtcc gacgcgatcc tgaaggcgcg cgacaagctg cgctgccacc
      181 agttgctggc ggcgcagggg atcgggctgc cggacacggt gttcggcgac aacccggacg
      241 acaccgccga cctgctgtcg ctgctcgggc cgccgccgca cgtcatcaag ctcaacgaag
      301 gcacccaggg caccggcgtg atgctgaccg agaagccctc ggcctcgcgc agcgtgatcg
      361 aggcgttgcg cgggctgtac gcgaacttcc tggtgcagga attcatcgcc gaggccaagg
      421 gcgcggacct gcgctgcttc gtggtcggcg gcgaggtggt cgcggcgatg cgccggcagg
      481 cggccaaggg cgagttccgt tccaacctgc accgcggcgg cagcgcccgg ccggtgcggc
      541 cgaccgaagc cgaggccgcg gtcgcggtgc gcgcggcggc ggtgctgggg cttggggtgg
      601 cgggcgtcga cctgatccgc tcccgtcgcg gcccgctggt gctggaggtc aactcctcgc
      661 ccggcctgga gggcatcgag gaggcgacgg gggtggacgt ggccggccgg atcatcgagc
      721 acgtggtcgc cgccggctcg ccgcccggcc cgcgccggcc ggccgtgcgg ctggccctgc
      781 cgccggcgct ggcgcgaccg gccccccgcc tgcgggcctg agcccggaaa gcggggcggg
      841 tttaacagcc ctttaatcgc ccgccggcta ccgtgtccgg accggattcc cgccggcccg
      901 gagtggctcc tcccggtggc ggagtacggt aatcggggca cttcttggcc caggcgcggt
      961 cccgctcctg ggtctttttc tgcctgcgcg aaagtcccgc cgcggcgcca tggccgggtt
     1021 cgcccggccg ttcacgaagg cccgtgccag aatccgttgt cgccccggcg tcgcccagcc
     1081 cgaaggacca tccgatgcgc atcctcgtca tcgaagacaa cagcgacatc gccgccaacc
     1141 tgggcgatta cctcgaggac cgcggccata ccgtcgactt tgccgccgac ggcatcaccg
     1201 gcctgcacct cgccgtggtc aacgacttcg acgcggtcgt gctcgacctc agcctgcccg
     1261 gcatggacgg gctggaggtc tgccgcaagc tgcgcaacga agcgcgcaag cagaccccgg
     1321 tgctgatgct gaccgcgcgc gactcgctgg agaacaagct ggccggcttc gactccggcg
     1381 ccgacgacta cctgatcaag ccgttcgcgc tgcaggaagt cgaagtgcgg ctcaacgcgc
     1441 tcgcgcgccg cggcaagggc gtgcagacgc gcgtcctcga ggtcgccgac ctcgaataca
     1501 acctggacac gctggaagtg cggcgcggcg gcaagctgct gcagctgaac ccgaccgcgc
     1561 tgaagatcct gcaggcgctg atggaggcct cgccggcggt cgtcacccgg caggaactgg
     1621 aaacgcgcgt gtggggcgag gaactgcccg attcggactc gctgcgcgtg cacatccacg
     1681 gcctgcgcca ggtggtcgac aagccgttcc cgacgcagtt gatccagacc cggcacggca
     1741 tcggctaccg catcgccgcg ccggaaccgg ccgcgacctg acgcgcgcac gcgccaccgc
     1801 atgacccaac cgctcctgac ggcgcccgcg cgccgcaaac ccacgcgcta ccggcggcgc
     1861 ctgcgcagcc gcatcgtgct ctcgttcctg ctgctcggct tcggcctgac cctgctgctc
     1921 gccttcgcca ccaactgggc gcgcggccgc gtcgagaacc agctggtcga ggacgtgatg
     1981 aaccgcaaca tcgacgagta cgcgcgccgc tactacgccg atccgagccg caacccggcg
     2041 gtgccggtgg agcagatccg cgcgttcgcg ttttccgccg acaagttcga ccgcgtgcgc
     2101 cacgagcggc ccgagtgggc ggagctgccg gacggcatct acggcatgaa cggcgtggac
     2161 gagggcggca cgccgttctc ctacaagctc gcggtgcgca agacgccgga ggcctggttc
     2221 ttcctcgcct acgacatgac ccagtcgctg cgcggcgaga agcagttcaa caacgcgctg
     2281 atcggcgtcg tcatcgtgtt caccgcgctg tcgctgctgg tcggctggtg ggcggcatcg
     2341 cgggtgatga gcccggtgtc ggaactggcg cagcgcctgc gccggtccgg ccgcagctcg
     2401 cagccggagg cattggcctc gcacttcgcc gacgacgagg tcgggcagct cgccagcgcg
     2461 ctcgacgact acgcggtgcg cctgaccgaa gtcgtgcagc gcgaccgcga gttcaacgcc
     2521 gacgtcagcc acgagctgcg caccccgctc gcggtgatca agggggcgat cgagctgctg
     2581 ctcgcgcggc ccgacctcga cgagaagacc aagagccgcc tgctgcgcat ccgccgcgcc
     2641 gagcagcagt gcaccgacct gatcagcgcc ctgctgctgc tctcgcgcaa cgagcggggc
     2701 cacggcgcgg ccgacgtcgc gcgcatcgcc gggcagctgc tcgacgcgca ccgcgcccag
     2761 ctcggcggca agccgctgga gctgcggctg gaaggcgagc accggctggt ggtggacgcg
     2821 ccggaggcgg cggtcgcggt cgcgctcggc aacctcgtcg gcaacgcggt caagtacacg
     2881 accgagggcg aagtggtcgt gcgcctgctc ggacaggcgg tggaggtggt cgacaccggt
     2941 cccggcctca gcgccgagga tgccgcgcgc ctgttcgagc gcgggtatcg cggcacccac
     3001 gccgagcact cgcagggcgg cggcatcggc ctgtcgatcg tgcgccggct gtgcgcgctc
     3061 tacggctgga ccgtgcgcgt cgtgccgggc gcggaccgcg gcgtggtcgc gaccttggca
     3121 ttcggcggct gacgcctgcc gcgcggccgg ggaagcgcga cagtcggtga tgcggagcag
     3181 gtcagccgga ttccggctta cacccgctcc agccagccgt accggtcggc cacgcggccg
     3241 tcgaacaggc cgaagaacag gtcctgcatg cgccgggtca tcggcccggg ctggccgctg
     3301 ccgacctggc ggccgtcgac cgagcggatc ggcgtgattt ccgccgccgt gccgcacatg
     3361 aacagctcgt cgcacaggta gaggtattcg cgcggcaggt cgcgctcgac caccgcgatg
     3421 ccgttgtcgc gcgccagcgt catcagcgtg ttgcgggtga tgccgttgag cagcgcggcg
     3481 ctgacgggcg tggtgtgcag cgcgccgtcg aacacgagga acaggttctc gcccgcgcct
     3541 tcgctgagca ggccggtcga cgcgagagcg atgccttctc cgaagcccag gcgccgcgcc
     3601 tcgcgcgcga ccagctggcc ggacaggtaa tttccgccgg ccttggcgcc cgccgggatg
     3661 gtgttgggcg cgaaacgctg ccagctcgac acgcaggcgt cgatgccgcg ctcgagcacg
     3721 tcgtcgccca ggtaggcgcc catctgccac gcggcgacgg cgacgtcggt cggggtgtcg
     3781 gcggagaggc cgaagccgcc gaggccgcgg aacgcgaccg ggcgcaggta ggccttcgtc
     3841 agcgcattcg ccttcagcac ctcgcggcag gcggcgttga gctcctcgag gccgtacggc
     3901 atctccatgt cgtagatccg ggccgaggcg aacaggcgac ggttgtggtc gctgaggcgg
     3961 aagatcgccg ggccatccgg ggtttcgtag ctgcggatgc cctcgaacac cgacgagccg
     4021 tagtggagcg cgtgcgccat gacgtgggtg gtggcttcgg cccagggctt gatcgtgccg
     4081 ttgtgccaga tccagtcggg atagcgcatg cgggggtcct tcgggaaaac gccattgtcc
     4141 caccaaccgc cgagcgccca ccacccggcg cggtgcgccc tccgcgccgg cggcgtgcgt
     4201 tcagaagctg atccaccagc aaccgaggta gcggcgcagc ggcagcacgg tatccgccgg
     4261 cgtggcgccg ttgcgcagcg tctgctgcag gcggagcgcg acgggcgcct gtcgcacggt
     4321 ctcctgcgga tacagttgcg cctcgtcccc ggcgggatag accggcacga tgccggcgag
     4381 cgggcgctgg gcgatcgcgg ccaggcgctc catcaccgca tagccgtccc gggtcgagag
     4441 gccggcccac aggtagctgt cggcgaggcg gttggcgtcg tggccctcga tcgccgactg
     4501 cagggcgaag gcgagatcgc gcagcgtgcg cgcgcagccg ccgcgatagg cggaatcgtt
     4561 cgcgggctgc accgggcgcg cgggcgcggg cgcggcgccc agttcctcgc agcggcggtc
     4621 ggtgtagaca tcgatgcccg cgggcgtcgt gcagtggcgc acctgcgccg gcgcgggcag
     4681 ggcgacgagg cacgagaggg cgaggagggc gcgcgacgcg aagggtgggc gcatgcggcc
     4741 agcgtagcgt ccgcggccat gcgtgcacag cgcatcggcc tgcgaccgtc aggagcgcgt
     4801 caggcgatcg tcgcgccggc ctgctggaag ctcacgaagt agcagccggc gtagcggtgc
     4861 acgtcgaact ccaccaccga cggcgcgccg cgtcccgcca gcacgacctg caggatgcct
     4921 ccgtcgccgc cgcgaccgtc gcccgccccg gccatgccgt cgtcggacag cgaggcgatc
     4981 tgcgcggcgt agtagcggct gtcgagggcc tgccgcccga gcaggtgcgc gagccgatcg
     5041 agggtgcgct ggccctggcg gtacgacatg cccacccagt gatagctctc ggcgagacgg
     5101 ttgacgtcgc ccagcgccag cgagccgcgc aggtcgacgg cgagctgctg cggcgagcgc
     5161 gcgcaaccgg aagccgtcgc gcgccgtccc ggcgcgccgg cggcggaagg cgcggcgtcc
     5221 tccagtgtca ccggtgccgg cgcgctcgca tcggcctgca gagccacgtg ccggtcgctc
     5281 gccagccgcg cgacgaggct gctcgacatc ggcgccggtt gcgcgccgat cagggtgcag
     5341 ggcttgtcgg tgtacacgct gccgccgtcg ccagcggtgc agtggccgac gatcgccggc
     5401 gcatcggatg gatcaccgct cgcgggaagc gccggcgccg agccgagcga cagcacgcca
     5461 gccagtccgg cgacggcgag catgcgcgtg cgtggatgcc ttccctgcat gcgcccgatg
     5521 ctcgggggcg cgaagtcgac ggcgcgtgcg ggcggccgcg ttcagggtga atcccgccaa
     5581 accagccggg gcgctcagcg cacgcgttgc aggacgttca gcgtcggctt cgacaggttg
     5641 agcgtgtaga agtgcaggcc gggcgcgcca ccggcgacca ggcgccggca caggtcggcg
     5701 acgaagtcgg ccgcgaaatc gcggatcgcg tcgacgtcgt cgccgtaggc ctgcatgcgc
     5761 ttgccgatcc agcgcgggat ctccgcgccg caggcttctg agaagcggcg cagctgcgag
     5821 aagttcgaga tcggcatgat gccgggcacg accgggatgt cgatcccgag ccggcgcgcg
     5881 tcgtcgacga agcggaaata cgcgtcggcg ttgtagaagt actgggtgat cgcgccgttc
     5941 gcgcccgcat cgaccttggc cttgaaatgg cgcaggtcgg cgaaggcgtc ctcggcctgc
     6001 gggtgcatct ccgggtagca gccgacttcg acctggaacc agtcgccatg ctcctcgcgg
     6061 atgaacgcga cgaggtcgga ggcgaagcgg aagtcgccca tgcgcgccat gcccgagggg
     6121 aggtcgccgc gcagcgcgac caggcgcctg cagcccagcg cacggtagag cttgagcaat
     6181 tggcggatct cgtcgcgcgt accgcccatg cacgacaggt gcggcgccgc ctccagcgcg
     6241 tgcgcttcgc gcaggtggcg cacggtttcg ggcgtgtagg acagggtcga gccacccgcg
     6301 ccgaacgtgc acgacacgta ctgcggcgcc tcttcgcgca gccgcctcgc ggtgcggtcg
     6361 agctgcgcgc gctgctcgtc ggtcttgggc ggatagaact cgaagctgat cgggacaagg
     6421 gccatcgcgg cgccacgcgg cggaaggtgc ggacaatata tctctgtttc cggatgaaga
     6481 gatagatggc ccgccggcct cctcgggcat ggcccggccc ggaaacgaga acgggcgcct
     6541 cgcggcgccc gttccgttcg cggatgcacc cccgtcagta gcggtagtgg tccggcttgt
     6601 agggcccttc gaccgcgacg ccgaggtagt cggcctggtc gcgggtgagc ttcgtcagct
     6661 tcacgccgat cttctccagg tgcaggcgcg cgacttcctc gtccagctgc ttgggcaggc
     6721 ggtacacggt cttctcgtag tcgtccttgt gctgccacag gtcgatctgc gcgagcgtct
     6781 ggttggagaa cgaattcgac atcacgaagc tcgggtggcc ggtggcgcag ccgaggttga
     6841 ccaggcggcc ttcggcgagc aggaagatcg cattgccgtt gccgaacacg tacttgtcga
     6901 cctgcggctt gatgttgatg cgctgcgcgc cggagtcgtt gagcgcgtcg acctggatct
     6961 cgttgtcgaa gtggccgatg ttgcagacga tcgcctggtc cttcatctgc tgcatgtgct
     7021 gcagggtgat cacgtccttg ttgccggtgg tggtcacgta gatgtcggcg cggccgaggg
     7081 tcgattcgat cgtgttgacc tcgaagcctt ccatcgccgc ctgcagggcg cagatcgggt
     7141 cgatctcggt gacgaccacg cgcgcgccgt aggcgcgcag cgagtgcgcc gagcccttgc
     7201 cgacgtcgcc gtagccgcac accaccgcga ccttgcccgc gagcatcacg tccatcgcgc
     7261 gcttgaggcc gtcggccagc gattcgcggc agccgtacag gttgtcgaac ttcgacttgg
     7321 tgaccgaatc gttgacgttg atcgccggca ccagcagctt gccctgctcg gcgatctggt
     7381 agaggcggtg cacgccggtg gtggtttcct cagacacgcc cttccagtcc gcgaccacgc
     7441 tggtccagaa gccggggcgt tccctggcga cgcgcttgag caggttcttg atgatctgct
     7501 cctcgtgcga ggaggagggc tcgtcgaccc acttcgagcc ctgttccagc tcgtagccct
     7561 tgtggatcag cagggtcacg tcgccgccgt cgtcgacgac cagctcgggg cccttgccgc
     7621 ccgggaaggt caccgcgtcg agcgtgcagt cccagtactc ctccagcgtc tcgcccttcc
     7681 acgcgaacac cggcgtcccg gtggcggcga tggcggcggc ggcgtggtcc tgggtcgaga
     7741 agatgttgca cgaggcccag cgcacgtccg cgccgacgtc cttcaacgtc tcgatcagca
     7801 cggcggtctg gatcgtcatg tgcagcgagc cggtcacgcg cacgcccttg agcggcttgg
     7861 cggccgcgtg cttgcggcgg atcgacatca ggcccggcat ctcgtgctcg gcgatctcga
     7921 tttccttgcg gccccagtcg gcgagcgaga tgtcggcgac cttgtagtcg tgggcaggcc
     7981 tggcctgtgc gttcatggtg ttgctccgtc gttggagtcg cggccggtgc ggcggggact
     8041 cgcattaacg ggcgccgttc gatggtgcac tccgccgagc ctggccgttc ctcgcgcggt
     8101 ggagtcccgc cttgacggtc gcagcgcccc tcgacggagc aggacgcgcg gcgctgcgcc
     8161 gcgcgtccgt gtgtgttggt acgcctgctt acttcagctt cgcgtccgca cgcagttcct
     8221 cggccttgtc ggtcttctcc cacgagaagg cggtggccgt ctgctgcttg ccgccggcgt
     8281 cggtgtagac gacttccttc ggcttgcggc cgaagtggcc gtaggacgcg gtcgacaggt
     8341 agatcgggtg gatcaggtcg agcatcttga cgatgccgta cgggcgcagg tcgaagtgct
     8401 tgcggatcag cttctcgatc tgcgcgtccg ggatcttgcc ggtgccgaac gtggtgaccg
     8461 agatcgaggt cggctcggcc acgccgatcg cgtagctcac ctgcacctcg cacttgtcgg
     8521 ccaggcccgc ggcgaccacg ttcttggcga cgtagcgcgc cgcgtacgcg gccgagcggt
     8581 cgaccttgga cggatccttg cccgagaacg cgccgccgcc gtggcgggcc atgccgccgt
     8641 aggtgtcgac gatgatcttg cggccggtca ggccgcagtc gccgaccggg ccgccgatct
     8701 cgaagatgcc ggtcgggttg atgtggatct tcttcttcga caggccttcc agccacgcct
     8761 tcggcagcac cggccggagg atgtgctcgt acacgccctc gacgaggtcc ttgtacttga
     8821 cgctcgggtc gtgctgggtc gacaggacga cggcgtcgag cccggcgacc ttgtcgtcgg
     8881 cgtagcgcag ggtgacctgc gacttcgcgt ccgggcgcag ccacggcagc ggcgagttct
     8941 tcttcttgcg gatcttcgcc tgctgctcga ccaggcggtg cgcgtagtag atcggcgccg
     9001 gcatgaattc gggcgcctcg ttgcaggcgt agccgaacat caggccctgg tcgcccgcgc
     9061 cctgttcctc cggcttcttg cggtcgacgc cggcggcgat gtgcggcgac tgcttgccga
     9121 tcaggttgag cacgccacag gtggcgccgt cgaagccgac gtcgctggag tcgtagccga
     9181 tgtcgaggat gaccttgcgg gtgagcgcct cgaggtcgat ccacgcgttg gtggtgatct
     9241 cgccggcgac gatcgccacg cccgtcttca ccatcgtctc gcaggccacg cgcgcgccct
     9301 tgtccctggc gagcagggcg tcgaggaccg catcggagat ctggtcggcg accttgtccg
     9361 gatggccttc ggagacggat tcggaggtga acaggtagct ggaagcggtc atctcgagat
     9421 gtatcctttg attcggatga aaggatggcc gcgcatcata ccgcctcggc cggaaccgcg
     9481 cattgtgcgc ccgatggcgt tcaggttctg caaggccgag caggcgccgc cgctcggccg
     9541 gcggtgcggc cggccgcttt ccatcggacg caatgcgcgc gcgccgctgc cgttgcagcg
     9601 aggc
//
LOCUS       DATIQC010000091         3528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_500605, whole genome shotgun sequence.
ACCESSION   DATIQC010000091 DATIQC010000000
VERSION     DATIQC010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500605"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2138
                     /gene="ligD"
                     /locus_tag="VLM17_01990"
     CDS             <1..2138
                     /gene="ligD"
                     /locus_tag="VLM17_01990"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA ligase D"
                     /protein_id="HSR64360.1"
                     /translation="LDFSLEGDKLHGGWKLVRTQQARGGKPQWLLIKRDDAYARDADA
                     DELMNAKERASTERAMARKQGRAAAPAKVAKAPRTRAPAPAKRATTRRRRIDWEARAG
                     AVPGAKRQARRTPLDPQLASLREVAPSGDDWLHELKWDGYRLLVDITGGAVRLRSRNG
                     LNWTEDYPDIVDAFETLGLGDASFDGELVALDPEGRDDFSLLQKTIEGSANAALRYMV
                     FDLTSLAGYDLTGCALVDRKELLEQVLQGVPPVVAYSQHIVGHGPEVFAASEKQGMEG
                     IISKQAKARYTPGRGTSWLKIKHGKSDEFIIVGYTAPKRSRTGFGALLMATRERGALK
                     YAGRVGTGYDDALLRSLSLRLKTLERREPTVAFPPHLPDRPRDVTWVEPQLVAEVAYR
                     GLGKEGLLRHPSFKGLREDKTVKDIGDAPAEPRITNPDKLIYPELKITKQQVFDYYRA
                     AAPQLLAELANRPLSLVRCPDGIAGQCFFQKHHARTLGQNVRIVPIREKDGSREEYLY
                     VDNADGVLELVQMNVLEFHPWGSQVGDVEHPDRLVFDLDPGEGVDWNAIKAAARDVRA
                     RLEEIGLQTFLRLSGGKGLHVVLPIRPGPDWDEAKAFCEAFANAMALRSPDKYVATAT
                     KARRKGVIFIDWLRNGRGATSVTNWSLRARREAGVAVPLAWSELGRTRSGHDYPLERA
                     LRRLASQRQDPWVTEGWGKATQQKLVALR"
     gene            complement(2203..>3528)
                     /locus_tag="VLM17_01995"
     CDS             complement(2203..>3528)
                     /locus_tag="VLM17_01995"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017115989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HSR64361.1"
                     /translation="KLRVEKAKMLGYPTYAAYVLADETAQTPEAVNDMLGKLAPPAVA
                     NARREAADMQAIIDKEQAAKGQPTFKLEPWDWAYYAEKVRQARYNFDESQLKPYFELD
                     NVQQNGVFYAANQEYGLTFKERHDLPVYEPDVRVFDVFDKDGKQLAIFISDMYARPSK
                     QGGAWMNSYVDQSALTGFVPVVANHLNIPKPPEGQPTLLTWDEVTTMFHEFGHALHGM
                     FSNVKYPYFSGTNVPRDFVEYPSQVNEMWADWPQILANYAKHYQTGAPMPKELLDKVI
                     ASQKFNQGFETTEYLGAAMLDQNWHQLPPEQIPDAAGVMPFEAAALQKDGVDFYAVPP
                     RYRTPYFSHIMGGYAAGYYAYIWSEVLDADSVEWFKQNGGLKRENGDHFRDTLLSRGG
                     SADALVLFKNFSGRDPYIEPLLVRRGLTSTADDTKAPDAKPTDASKPNK"
BASE COUNT          577 a         1161 c         1237 g          553 t
ORIGIN      
        1 agctcgattt ctccctcgag ggcgacaagc tgcacggcgg ctggaaactg gtgcggaccc
       61 agcaggcgcg cggcggcaag ccgcagtggc tgctgatcaa gcgcgacgat gcctacgcgc
      121 gcgacgccga cgcggacgag ctgatgaacg cgaaggagcg cgcttccacg gagcgggcga
      181 tggccaggaa gcagggcagg gcggcggcgc ccgccaaggt ggccaaggcg ccacgcacgc
      241 gcgcaccagc gccggcgaag cgggcgacca cgcgcaggcg ccgcatcgac tgggaggcgc
      301 gcgccggggc ggtacctggg gcgaagcgcc aggcacggcg gacaccgctc gatccgcagc
      361 tcgccagcct gcgcgaggtc gcgccatcgg gcgacgactg gctgcacgaa ctcaagtggg
      421 atggctaccg cctgctcgtc gacatcaccg gcggggcggt gcggctgcgc tcgcgcaacg
      481 gcctcaactg gaccgaagac tatcccgaca tcgtcgatgc gttcgaaacg ctgggcctgg
      541 gcgatgccag cttcgatggc gaactcgtcg ccctcgatcc cgaaggacgc gacgacttca
      601 gcctgctgca gaagaccatc gagggcagcg cgaacgcggc cctgcgctac atggttttcg
      661 acctgacctc gctcgcaggt tacgacctca cggggtgcgc gctggtcgac cgcaaggaac
      721 tgctcgaaca ggtgctgcag ggcgtgccgc cggtggtggc ctacagccag cacatcgtcg
      781 gccacgggcc agaggtgttc gccgccagcg agaagcaggg catggaaggc atcatcagca
      841 aacaggccaa ggcgcgctac acgcccggcc gcggcaccag ctggctgaag atcaagcacg
      901 gcaagagcga cgagttcatc atcgtcggtt acaccgcgcc aaagcgctcc cgtacgggct
      961 ttggcgcact gctgatggcg acgcgggagc gcggcgccct gaagtacgcc gggcgcgtcg
     1021 gcaccggcta cgacgatgcg ctgctgcgca gcctgtcctt gcgcctgaag acgctcgagc
     1081 ggagggaacc gacggtcgcc ttcccgccgc acctgccgga tcggccgcgc gacgtcacct
     1141 gggtcgagcc gcagctggtc gccgaagtgg cgtaccgcgg cctcggcaag gaaggcctgc
     1201 tgcgccatcc gagcttcaag ggcctgcgcg aggacaagac ggtgaaggac atcggcgacg
     1261 ccccggcgga accccgcatc accaatccgg acaagctcat ctatccggag ttgaagatca
     1321 ccaagcagca ggtcttcgat tactaccgcg ccgccgcgcc gcagctgctg gccgaactcg
     1381 ccaaccgccc gctgtcgctg gtgcgctgcc cggacggcat cgcgggccaa tgcttcttcc
     1441 agaagcacca cgcccgcacg ctgggccaga acgtccgcat cgtgccgatc agggagaagg
     1501 acggcagccg cgaggagtac ctctacgtcg acaacgccga cggcgtgctc gagctcgtgc
     1561 agatgaacgt gctcgagttc catccctggg gctcgcaggt gggcgatgtc gaacatcccg
     1621 accggctggt gttcgacctc gacccgggcg agggcgtcga ctggaatgcg atcaaggccg
     1681 ccgcgcgcga cgtgcgggcg cggctggagg agatcggtct gcagacgttc ctgcgccttt
     1741 cgggcggcaa gggcctgcac gtcgtgctgc cgatccggcc gggacccgac tgggacgagg
     1801 ccaaggcgtt ctgcgaggcc ttcgccaatg cgatggcgct tcgctcgccc gacaagtacg
     1861 tggccaccgc gaccaaggcc aggcgcaagg gcgtgatctt catcgactgg ctgcgcaacg
     1921 gccggggcgc gaccagcgtg acgaactggt cgctgcgcgc gcgcagggag gcgggcgtgg
     1981 cggtgccgct cgcgtggagc gaactcggcc gcaccaggtc gggacacgac tatccgctcg
     2041 agcgcgccct ccgccgcctt gccagccagc gccaggatcc gtgggtgacc gaaggctggg
     2101 gcaaggccac gcagcagaag ctcgtcgcgt tgcgctgaac gttcgcccga aagaaaaccg
     2161 cccgggagga cccgggcggc atcgtcgcag cacctgcggg gcttacttgt tcggcttgga
     2221 cgcgtcggtc ggcttggcgt ccggcgcctt ggtgtcgtcg gcggtcgacg tcaggccgcg
     2281 gcgcaccagc aacggctcga tgtacgggtc ccggccggag aagttcttga acagcaccag
     2341 cgcatcggcg ctgcctccgc gcgagagcag cgtgtcgcgg aagtggtcgc cgttctcgcg
     2401 cttcaggccg ccgttctgct tgaaccactc gacgctgtcg gcatcgagca cctccgacca
     2461 gatgtaggcg tagtagccgg ccgcgtagcc gcccatgatg tggctgaagt agggcgtgcg
     2521 gtagcggggc ggcacggcgt agaagtcgac gccgtccttc tgcagcgcgg cggcttcgaa
     2581 cggcatcacg ccggcggcat ccgggatctg ttccggcggc agctggtgcc agttctggtc
     2641 gagcatggcg gcgccgaggt actcggtggt ctcgaagccc tggttgaact tctggctggc
     2701 gatcaccttg tccagcagtt ccttcggcat gggcgcgccg gtctggtagt gcttggcgta
     2761 gttcgcgagg atctgcggcc agtcggccca catctcgttg acctgcgacg ggtactcgac
     2821 gaagtcgcgc ggcacgttgg tgccggagaa gtaggggtac ttcacgttgg agaacatgcc
     2881 atgcagggca tggccgaact cgtggaacat cgtcgtcact tcatcccagg tcagcagggt
     2941 cggctggcct tccggcggct tggggatgtt gaggtggttg gccaccaccg gcacgaaacc
     3001 ggtcagcgcc gactggtcga cgtaggagtt catccacgcg ccgccctgct tggacgggcg
     3061 ggcgtacatg tccgaaatga agatggcgag ctgcttgccg tccttgtcga acacgtcgaa
     3121 cacgcgcacg tcgggttcgt acaccggcag gtcgtggcgt tccttgaagg tcagcccgta
     3181 ttcctggttg gcggcgtaga agacgccgtt ctgctgcacg ttgtcgagct cgaagtaggg
     3241 cttgagctgc gactcgtcga agttgtagcg cgcctggcgc accttctccg cgtagtacgc
     3301 ccagtcccac ggctccagct tgaacgtcgg ctggcccttg gcggcctgct ccttgtcgat
     3361 gatcgcctgc atgtcggccg cttcgcgcct ggcgttggcc accgccggcg gcgccagctt
     3421 gccgagcatg tcgttgaccg cttccggcgt ctgcgccgtt tcatcggcca gcacgtaggc
     3481 ggcgtaggtc gggtaaccga gcatcttcgc cttctcgacg cgcagctt
//
LOCUS       DATIQC010000092         2326 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_359731, whole genome shotgun sequence.
ACCESSION   DATIQC010000092 DATIQC010000000
VERSION     DATIQC010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359731"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..633
                     /locus_tag="VLM17_02000"
     CDS             67..633
                     /locus_tag="VLM17_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR64362.1"
                     /translation="MKFHFPWPVAAAIATALALAACQRSAPAPGSTTASASTAPPPAV
                     GQPAEVAIPSLRVTTVDGKPWDLAGRRGRWVVVNFWATWCGPCLKEMPELSALDAMRE
                     HVEVIGLDYEDTTPAALQAFLRKHPVVYPVAIVDVYAPPRDFAPPRGLPTTFLIAPDG
                     KVAKHFLGPVSARDIDDAIAAAGGPKAG"
     gene            633..902
                     /gene="yccX"
                     /locus_tag="VLM17_02005"
     CDS             633..902
                     /gene="yccX"
                     /locus_tag="VLM17_02005"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HSR64363.1"
                     /translation="MAAARFLVSGRVQGVAFRAHAREEALRLGLRGYARNLADGRVEV
                     VACGDAQQVDALAGWLQHGPPLARVDDVERQAVEREAIGDGFSTA"
     gene            complement(915..1691)
                     /gene="ppk2"
                     /locus_tag="VLM17_02010"
     CDS             complement(915..1691)
                     /gene="ppk2"
                     /locus_tag="VLM17_02010"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019186099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HSR64364.1"
                     /translation="MGRLKRKPYKKHLHALQLELACAARWVRANDQRLVVLFEGRDAA
                     GKGGAIDAIREHLNPRQCRIAALPKPDERERTEWYFQRYVAHLPAAGEIVLFDRSWYN
                     RAGVERVMGFATEAQVRHFLQQAPPFEKQLADDGVLLFKYWLCCDQAEQERRFAERHE
                     DRLKQWKLSPVDEGARRHYADYSAAREAMLRATHTPWAPWTLVDFNDQRRGRLTLLQD
                     LLRRLPDTRLPDDVPALPPLGGKPLRERYGVLQPIPSFGD"
     gene            complement(1777..2220)
                     /locus_tag="VLM17_02015"
     CDS             complement(1777..2220)
                     /locus_tag="VLM17_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64365.1"
                     /translation="MASIRRATPADLPALAPLFDAYRRFYGQPGDLARAEAFLRERLQ
                     RAESVVLLAERDGAAAGFTQLYPLFSSVRTARLWVLNDLFVAEQARRGGVARALLDAA
                     ATFARNDGARGIMLETTRDNAPARALYRAAGWNEDASQWYSLAFG"
BASE COUNT          293 a          829 c          877 g          327 t
ORIGIN      
        1 gttgcgcctc ccgctgcggg acctgctcaa gcgccgcgtg tccacccttt acgaggatgt
       61 cctgcaatga agttccattt cccgtggccg gtcgccgccg ccatcgcgac cgcgctcgcg
      121 ctcgccgcct gccagcgcag cgcgccggcg ccaggttcca cgaccgcgtc cgcctcgacc
      181 gcgccgcccc ccgccgtggg gcagccggcg gaggtcgcca tcccctcgct gcgcgtcacc
      241 accgtcgacg gcaagccgtg ggacctcgcc gggcggcgtg gtcgatgggt ggtggtgaac
      301 ttctgggcga cctggtgcgg tccgtgcctg aaggaaatgc cggagctctc cgcgctggac
      361 gcgatgcgcg agcacgtcga ggtgatcggc ctggactacg aggacacgac gcccgccgcg
      421 ctgcaggcct tcctgcggaa acacccggtg gtgtatccgg tcgcgatcgt cgacgtgtac
      481 gcgccaccga gggatttcgc gccgccgcgc gggctgccga cgacgttcct catcgccccg
      541 gacgggaagg tggcgaagca cttcctcggc ccggtgagcg ccagggacat cgacgacgcg
      601 atcgccgccg cgggcgggcc caaggccggc tgatggccgc cgcgcgcttc ctggtcagcg
      661 gccgcgtgca gggcgtcgcg ttccgcgcgc acgcccgcga ggaggcgttg cgcctgggcc
      721 tgcgcggcta cgcgcgcaac ctcgccgacg gacgcgtgga agtggtggcc tgcggcgatg
      781 cgcagcaggt cgatgcgctg gccggctggc tgcagcacgg gccgccgctg gcgcgcgtgg
      841 acgatgtcga gcggcaagcg gtcgagcgcg aggcgatcgg cgacggcttc tccaccgcgt
      901 gagcgcgcgc ggcgtcagtc gccgaacgac gggatcggct gcagcacgcc atagcgctcg
      961 cgcagcggct tgcccccgag cggcggcaac gccggcacgt cgtcgggcag gcgggtgtcg
     1021 ggcagccgtc gcagcaggtc ctgcagcagg gtcagccgtc cgcggcgctg gtcgttgaag
     1081 tcgaccagcg tccacggtgc ccaaggcgtg tgggtcgccc gcagcatcgc ttcgcgcgcg
     1141 gcgctgtagt ccgcgtagtg ccgccgcgcg ccttcgtcca ccggcgacag cttccactgc
     1201 ttgagccggt cctcgtggcg ctcggcgaag cgccgctcct gttctgcctg gtcgcagcac
     1261 agccagtact tgaacagcag cacgccgtcg tcggccagct gcttctcgaa cggcggcgcc
     1321 tgttgcagga aatgccgcac ctgcgcttcg gtggcgaacc ccatcacccg ctcgacgccg
     1381 gcgcggttgt accagctgcg gtcgaacagc acgatctcgc ccgccgcggg caggtgggcg
     1441 acgtaccgct ggaagtacca ttcggtgcgt tcgcgctcgt ccggtttcgg cagcgcggcg
     1501 atgcggcact ggcgcggatt gaggtgctcg cggatggcgt cgatggcacc acccttgccg
     1561 gcggcatcgc ggccttcgaa gagcaccacc agccgctggt cgttcgcccg cacccagcgc
     1621 gccgcgcagg ccagttccag ttgcagggca tgcaggtgct tcttgtacgg cttgcgcttg
     1681 agccggccca tgcggacatc ctcgcccggg cgggcgtgga cgcggcgtgg cggcgcgccg
     1741 ggcgggcgcg gccgaggtgg ccgcggaatt acgggctcag ccgaatgcga gcgagtacca
     1801 ctggctcgca tcctcgttcc agccggcggc gcgatacagc gcgcgtgccg gcgcgttgtc
     1861 gcgcgtggtt tcgagcatga tgccgcgcgc gccgtcgttc cgggcgaagg tcgcggcggc
     1921 gtcgagcagg gcgcgcgcga ccccgccgcg tcgcgcctgt tccgcgacga acaggtcgtt
     1981 gagcacccac aggcgcgcgg tgcgcaccga ggagaacagc ggatagagct gggtgaagcc
     2041 cgccgcggcg ccgtcgcgct cggccagcaa caccaccgat tcggcgcgct gcaggcgttc
     2101 gcgcaggaag gcttccgcgc gcgccaggtc gccgggctgg ccgtagaacc ggcgatacgc
     2161 gtcgaacaga ggcgcgagcg cgggcaggtc ggcgggggtg gcgcggcgga tcgaagccat
     2221 ggcggcgggg gtgggggcgc gcgccagtct agccgcgcgg cgccggcggc ggcatgcgca
     2281 tgtccgcgtg cgcggcctgc agccagccct cgatgccggc gcggtc
//
LOCUS       DATIQC010000093         5396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_430405, whole genome shotgun sequence.
ACCESSION   DATIQC010000093 DATIQC010000000
VERSION     DATIQC010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5396
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430405"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..913
                     /locus_tag="VLM17_02020"
     CDS             <1..913
                     /locus_tag="VLM17_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HSR64366.1"
                     /translation="GTHVHAFQALLGADGAGSSLRAQMARCMDLGERTESLGHGYKEL
                     EIPPAKDGGFRIEPNALHIWPRGRYMCIALPNDERTFTVTLFLPNEGDPSFATVQSGE
                     DAHRLFARDFADALPLIPGLEHDFEAHPTGTLATLYLDRWRLDDRAVLLGDAAHAMVP
                     FHGQGMNCAFEDCVALAAHLQRSPDLATAFAGFEAERMPNARAIQAMALENYLEMRER
                     VDDADFLLQRDLERLLAERHPDRFVPRYAMVTFRRLPYATAFERGQVQRELLVEATRG
                     RGSLDGLDWAWLDAEVARRLPPLPAEA"
     gene            978..2420
                     /gene="sbcB"
                     /locus_tag="VLM17_02025"
     CDS             978..2420
                     /gene="sbcB"
                     /locus_tag="VLM17_02025"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000175 - 3'-5'-RNA exonuclease activity
                     [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008310 - single-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HSR64367.1"
                     /translation="MPASFLFYDLETFGSDPRTSRIAQFAAIRTDAALLQVEEPTSFF
                     VRPADDLLPSPGATLVTGIAPQQALREGVGEAEAFARIFDEMARPDTCTLGYNSLRFD
                     DEFVRHGLFRNFFDPYEREWKGGNCRWDLLDVLRLAHALRPEGIEWPRREDGAPSFRL
                     EHLATANGVRDGDAHEALSDVRALIGLARKLRDAQPRLWEYALRLRDKRHAATMLDTL
                     AMTPVLHVSQRYPASRLCAAAVLPLARHPRVDSRVIVFDLDSEPDALLSLDPDEIADR
                     LYTPAADLPEGEARIPLKEVHLNRCPALVAWSHLRAEDHARLGIEPALVEARAARLRA
                     VGAELAEKVRRVYASERVREPADADASLYDGFVGDGDRRRIAEVRATPPEALGTRDFG
                     FSDPRLPELLFRYRARNWPQALTARERQRWDDYRRRRLFGESGLSEQSWDAFRAELAL
                     LRARHAADGARLALLDQLEAWGLEITATLR"
     gene            2417..3103
                     /locus_tag="VLM17_02030"
     CDS             2417..3103
                     /locus_tag="VLM17_02030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005996685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2461 domain-containing protein"
                     /protein_id="HSR64368.1"
                     /translation="MTTYFDERAFRFLRGLARHNERAWFHAHKSDYDAHVRGPFLRLI
                     ADLQPTLAGISGHYRADPKPLGGSLFRIQRDTRFAGDKSPYKSWQGARLFHARRRELP
                     APSFYLHLQPGECFVGAGLWHPEPATQRTVRQFIFDNPGSWKATAHAPAFRRRFDLGS
                     EEMLVRPPRGFPAEFEFIEDLRRRNFVALRALDDATMTGPRLRQVLERDLQALAPLVD
                     YLCAALDLEF"
     gene            3124..3678
                     /locus_tag="VLM17_02035"
     CDS             3124..3678
                     /locus_tag="VLM17_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2939 domain-containing protein"
                     /protein_id="HSR64369.1"
                     /translation="MKKTLATLLAVLLAIGAYVAAGPWLTVRAIRGALQAQDATALAA
                     QVDFPMLRASLKAQMEDRLARAAGSDWQDNPLGQAGIALAGGVLDGAVDAMVSPGGLA
                     AMMEGRAVWKRVRGGLSGDDAAAGQDPLHDARYRYESLSSFTATVRGPHGAPIVFVMH
                     RDGLRWRLADIRLPAGDDPPPSTS"
     gene            3758..4819
                     /locus_tag="VLM17_02040"
     CDS             3758..4819
                     /locus_tag="VLM17_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR64370.1"
                     /translation="MRIAQIAPLCEAVPPRLYGGTERIVAYLSDALVDAGHDVTLFAA
                     ADARTHASLVAARDQAIRLDPEPLKSDVAAHLSMLHEVRRRRHEFDVLHFHVDLMHFP
                     LFEDCPERTLTTLHGRLDLKDLPDAYRRWPHFPLVSISDHQRRPLRFANWAGTVYHGL
                     PGTLLPFNPRPSGGYLAFLGRISPEKRPDRAIAIARRAGLPLRIAAKVDQADRAYFHD
                     EIRPLLTDPNVEFIGEIGDREKAAFLGNATALLFPIDWPEPFGLVMIEAMACGTPVVA
                     WNCGAVPEVIDDGVTGRVVTSEDEAVAAVAEVARYDRRRIRDVFERRFSAGAMAAGYE
                     ALYRRVRDDAGSATRLRMA"
     gene            4828..>5396
                     /locus_tag="VLM17_02045"
     CDS             4828..>5396
                     /locus_tag="VLM17_02045"
                     /inference="COORDINATES: protein motif:HMM:NF026092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching N-terminal
                     domain-containing protein"
                     /protein_id="HSR64371.1"
                     /translation="MAEPAATAASFTTHVLKDGDSFLVANAYGDVEGRSDGLFHDDTR
                     LLSQFRLRIAGAPPELLSSAVTRDNVFFVSHLTNRPLPELGAAPAPSGLVHIVRTRFL
                     CVDRLFEHTCCRNYGQHPVRAPLRFDFGADFSDMFEVRGCVRVERGELLVPRVRHGGV
                     QFAYRGLDGRLRTSAIAFSREPAQLAIDGA"
BASE COUNT          728 a         2041 c         1844 g          783 t
ORIGIN      
        1 aggcacgcat gtgcatgcct tccaggccct gcttggcgcc gatggcgcgg gctcgtccct
       61 gcgcgcgcag atggcccgct gcatggatct gggcgagcgc accgaaagcc ttggccacgg
      121 ctacaaggaa ctggagatcc cgcccgcgaa ggacggcggc ttccgcatcg agcccaacgc
      181 gctgcacatc tggccacgcg gccgctacat gtgcatcgcg ctgccgaacg acgaacgcac
      241 gttcacggtg acgctgttcc tcccgaacga gggcgacccg agcttcgcca ccgtgcagag
      301 cggcgaggac gcgcaccgcc tgttcgcgcg cgatttcgcc gacgcgctgc cgctgattcc
      361 cgggctcgag cacgacttcg aggcgcaccc caccggcacg ctggcgacgc tgtacctcga
      421 ccgctggcgc ctggacgacc gcgcggtcct gctcggcgat gccgcccacg ccatggtgcc
      481 cttccacggc cagggcatga actgcgcgtt cgaggactgc gtggcgctgg ccgcccacct
      541 gcagcggtcg cccgacctgg cgacggcctt cgccggcttc gaggccgagc gcatgcccaa
      601 cgcgcgcgcg atccaggcga tggcgctgga gaattacctg gagatgcgcg agcgggtcga
      661 cgacgccgac ttcctgctgc agcgcgacct cgagcgcctg ctggccgagc gccacccgga
      721 ccgcttcgtc ccgcgctacg cgatggtgac cttccgccgc ctgccgtacg cgaccgcgtt
      781 cgagcgcggc caggtgcaac gggaactgct ggtggaagcg acgcgcgggc ggggttcgct
      841 cgacggcctc gactgggcct ggctggacgc ggaagtcgcg cgccgcctgc cgccgctccc
      901 ggcggaggcg taaggccggc ctgtcgcagg tggtgcgacc cgcgccccgc atcctgcagg
      961 aaaagcccgc gatcgcgatg cccgcaagct tcctcttcta cgacctcgaa accttcggca
     1021 gcgacccgcg cacctcgcgc atcgcgcagt tcgcggccat ccgcacggac gccgcgctgc
     1081 tgcaggtcga ggagccgacc agcttcttcg tccgcccggc cgacgacctg ctgccctcgc
     1141 ccggcgccac gctggtcacc ggcatcgccc cgcagcaggc gctgcgcgaa ggcgtgggcg
     1201 aagcggaagc cttcgcgcgc atcttcgacg agatggcgcg gccggacacc tgcactctcg
     1261 gctacaactc gctgcggttc gacgacgagt tcgtccgcca cggcctgttc cgcaacttct
     1321 tcgacccgta cgaacgagag tggaaaggcg gcaactgccg ctgggacctg ctcgacgtgc
     1381 tgcgcctggc gcacgcgctg cggccggaag gcatcgaatg gccgcgccgc gaggacggcg
     1441 ccccgtcgtt caggctcgag cacctcgcca ccgccaacgg cgtgcgcgat ggcgatgcgc
     1501 acgaggcgct gtccgacgtg cgcgcgctga tcggcctggc acgcaagctg cgcgacgccc
     1561 agccgcgcct gtgggagtac gcgctgcgcc tgcgcgacaa gcgccacgcc gccacgatgc
     1621 tggacacgct ggcgatgacg ccggtgctgc acgtctcgca gcgctatccg gccagccgcc
     1681 tgtgcgcggc cgccgtgctg ccgctggccc ggcatccccg ggtggacagc cgggtgatcg
     1741 tgttcgacct cgacagcgaa ccggacgcgc tgctctcgct cgacccggac gagatcgccg
     1801 accgcctgta cacccccgca gccgacctgc ccgagggcga ggcccgcatc ccgctcaagg
     1861 aagtgcacct caaccggtgc ccggccctcg tggcctggag ccacctgcgc gccgaggacc
     1921 acgcgcgcct cggcatcgag ccggccctgg tggaggcgcg cgccgcgcgc ctgcgcgcgg
     1981 tcggcgcgga actcgccgaa aaggtgcgcc gggtctacgc cagcgaacgc gtgcgcgaac
     2041 ccgccgatgc cgatgcatcg ctctacgacg gcttcgtcgg cgacggcgac cgtcgccgca
     2101 tcgccgaagt gcgcgccacg ccgccggaag ccctgggcac gcgcgatttc ggcttctctg
     2161 atcctcgcct gccggagctg ctgttccgct accgcgcacg caactggccg caggcgttga
     2221 ccgcgcggga acgccagcgc tgggacgatt accgtcgccg ccgcctgttc ggcgagtccg
     2281 gcctgtccga gcagtcgtgg gacgcgttcc gcgcggaact cgcgctgctg cgcgcgcggc
     2341 acgccgccga cggagcgcgg ctggcgctgc tcgaccagct ggaggcctgg ggcctggaga
     2401 tcacggcaac gctgcgatga cgacgtattt cgacgaacgc gccttccgtt tcctgcgcgg
     2461 gctcgcgcgc cacaacgagc gtgcatggtt ccacgcgcac aagtccgact acgacgcgca
     2521 cgtgcgcggc cccttcctgc gcctgatcgc cgacctgcag ccgacgctcg caggcatcag
     2581 cgggcattac cgcgccgatc cgaagccgct cggcggctcg ctgttccgca tccagcgcga
     2641 tacccgcttc gccggcgaca agtcgccgta caagtcgtgg cagggtgcgc ggctgttcca
     2701 tgcgcggcgc cgcgaactgc cggcgccctc gttctacctg cacctgcagc cgggcgagtg
     2761 tttcgtcggc gccgggctgt ggcacccgga accggcgacg caacgcacgg tacggcagtt
     2821 catcttcgac aaccccggca gctggaaggc gaccgcgcat gcgccggcgt tccgccgccg
     2881 cttcgacctg ggttcggagg agatgctggt gcgcccgccg cgcggctttc ccgcggagtt
     2941 cgaattcatc gaagacctgc gccggcgcaa tttcgtcgcc ctgcgcgcgc tcgacgacgc
     3001 caccatgacc ggcccgcgcc tgcggcaggt gctggagcgc gacctgcagg cgctggcgcc
     3061 gttggtcgat tacctctgcg cggcgctgga cctggagttc tgaccgactg cgcggaggcc
     3121 cggatgaaga agacgctcgc aacgctgctc gccgtcctgc tggccatcgg cgcctatgtc
     3181 gccgccggac cctggctgac ggtgcgtgcg atccgcggcg cgctgcaggc gcaggatgcc
     3241 accgcccttg ccgcgcaggt cgacttcccc atgctgcgcg cgagcctgaa ggcgcagatg
     3301 gaggaccggc ttgcgcgcgc cgccggatcg gactggcagg acaacccgct ggggcaggcg
     3361 ggcatcgcgc tggcgggtgg cgtgctcgat ggcgcggtcg atgcgatggt gagcccgggc
     3421 ggactggccg cgatgatgga gggccgcgcg gtgtggaagc gcgtgcgcgg cggcctctcc
     3481 ggcgacgacg cggccgcggg gcaggacccc ctccacgacg cgcgctaccg ctacgagtcg
     3541 ctgtccagct tcaccgccac ggtgcgtggc ccgcacggcg cgccgatcgt gttcgtcatg
     3601 caccgcgacg ggctgcgctg gaggctggcc gacatccggc tgcccgccgg cgacgacccg
     3661 ccgccgtcaa cttcctgaac ccggcatacg gccgccacac gccgtattta cgccggccgc
     3721 cctacgctgc gaagccgtgc cggatgaggt cgtgtcgatg aggatcgccc agatcgcgcc
     3781 cttgtgcgaa gcggtgcccc cgcgcctgta tggcggcacc gagcgcatcg tcgcctacct
     3841 ctccgatgcg ctcgtcgacg ccgggcatga cgttaccctc ttcgctgccg ccgatgcgcg
     3901 cacccacgcc tcgctggtcg cggcgcgcga ccaggccatc cgcctcgatc cggagccgct
     3961 caagtccgac gtcgccgccc acctgtcgat gctgcacgag gtgcgccgcc gccggcacga
     4021 gttcgacgtg ttgcacttcc acgtcgacct gatgcatttc ccgctgttcg aggactgccc
     4081 cgagcgcacg ctgacgacgc tgcacgggcg gctggacctg aaggacctgc ccgacgcata
     4141 ccgccgctgg ccgcacttcc ccctggtgtc gatctccgac caccagcgcc ggccgttgcg
     4201 tttcgccaac tgggccggga ccgtctacca cgggctgccc gggacgctgc tgccgttcaa
     4261 cccgcggccg agcggcggct acctggcctt cctcggccgc atctcgccgg agaagcggcc
     4321 cgaccgcgcc atcgcgatcg cgcgccgcgc cggcctgccg ctgcggatcg ccgccaaggt
     4381 cgaccaggcc gaccgcgcgt atttccatga cgagatcagg ccgctgctga ccgacccgaa
     4441 cgtcgagttc atcggcgaga tcggcgaccg cgagaaggcc gccttcctcg gcaacgccac
     4501 tgcgctgctg ttcccgatcg actggccgga accgttcggc ctggtgatga tcgaggcgat
     4561 ggcctgcggc acgccggtcg tcgcctggaa ctgcggcgcg gtgccggaag tcatcgacga
     4621 cggcgtgacc gggcgcgtcg tgacgtccga ggacgaggcc gtggcggcgg tggccgaagt
     4681 cgcccgctac gaccgccggc gcatccgcga cgtcttcgag cggcgttttt ccgccggcgc
     4741 gatggccgcc ggctacgagg cgctgtaccg gcgcgtgcgc gatgacgccg gcagcgcgac
     4801 gcggctgcgc atggcctgac gcgccgcgtg gccgagcccg ccgccaccgc cgcctcgttc
     4861 accacgcacg tcctcaagga cggcgacagc ttcctcgtcg ccaatgccta cggcgacgtc
     4921 gagggacgtt cggacggcct gttccacgac gacacccggc tgctgtcgca gttccgcctg
     4981 cgcatcgccg gggccccgcc ggaactgctc agctccgcgg tgacgcgcga caacgtcttc
     5041 ttcgtctcgc acctgaccaa ccggccgctg cccgagctcg gcgcggcccc ggccccgtcc
     5101 gggctggtgc acatcgtgcg cacgcgtttc ctctgcgtcg atcgcctgtt cgagcacacc
     5161 tgctgccgca actacggcca gcacccggtg cgcgcgccgc tgcgtttcga cttcggcgcc
     5221 gacttcagcg acatgttcga agtgcggggt tgcgtgcgcg tcgaacgcgg cgaactgctg
     5281 gtgccgcgcg tacgccacgg tggcgtgcag ttcgcctacc gcggcctgga cggtcgattg
     5341 cggacctccg cgatcgcgtt ctcgcgcgag cccgcgcagc tggccatcga cggcgc
//
LOCUS       DATIQC010000094         9136 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_147649, whole genome shotgun sequence.
ACCESSION   DATIQC010000094 DATIQC010000000
VERSION     DATIQC010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9136
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147649"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..750)
                     /locus_tag="VLM17_02050"
     CDS             complement(<1..750)
                     /locus_tag="VLM17_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008264925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HSR64372.1"
                     /translation="MSFRPLRSLLAAALAVAATPAFAADSYTQFSNTVFFGDSLSDSG
                     HFRPALVQMLGPNGALIGRFTTNPGLVWGEYVAGYYGGNPASDNQGGTDYAVGGARVG
                     VDGSSGLGPIPSLATQLGTYLAANGGHADPNALYSVWGGANDLFSITDPATAPATIGA
                     AVTGEIGLVGALQQAGARYVLVANVPDLGVTPAYSGSPLTAGFGTQLAAGYNAALFDG
                     LASQGLRVIPLDAFSLLHEIIADPSLYGFTNV"
     gene            886..1086
                     /gene="thiS"
                     /locus_tag="VLM17_02055"
     CDS             886..1086
                     /gene="thiS"
                     /locus_tag="VLM17_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HSR64373.1"
                     /translation="MDIRLNGAAHTLPRDCTIARLLEEAGLAGRRVAVEVNGEIVPRG
                     AHARRALEDGDRVEIVHALGGG"
     regulatory      complement(1138..1227)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01051"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cyclic di-GMP riboswitch class I; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="cyclic di-GMP"
                     /db_xref="RFAM:RF01051"
     gene            1369..2211
                     /locus_tag="VLM17_02060"
     CDS             1369..2211
                     /locus_tag="VLM17_02060"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008212257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HSR64374.1"
                     /translation="MTQPAHAAGPLAGVETLSDPLVIAGRSYRSRLLTGTGKFKDLDE
                     TRRATEAAGAQIVTVAIRRTPLFNKAVGQNPGEPNLLDVLPPDRYTILPNTAGCYTAE
                     DAVRTCRLARELLDGHPLVKLEVLGDQKTLFPDVVQTLKAAEVLVADGFQVMVYTSDD
                     PILARRLEEIGCVAVMPLAAPIGSGLGIQNRWNLLEIVENARVPIIVDAGVGTASDAA
                     IAMELGCDGVLMNTAIAGARDPVLMAHAMKLAVEAGRAASRAGRIPRKRFASASSPID
                     GLVA"
     gene            2228..2977
                     /gene="trmB"
                     /locus_tag="VLM17_02065"
     CDS             2228..2977
                     /gene="trmB"
                     /locus_tag="VLM17_02065"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016851486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HSR64375.1"
                     /translation="MTDPFSSSGAKTPPKPFTVEEGHRKVRSFVLRQGRFTPAQQRAF
                     DELWPRFGLDYLPSARGGQPRDFDGVFGRHAPRVLEIGFGNGEALRYAARHDPSRDLI
                     GIEVHAPGVGRLLNALADDGATNVRLYHHDAVEVLQHEIADGALDEIRIYFPDPWHKK
                     RHHKRRLVQPDFAALLVRKLAPGGRLHLATDWHDYAEQMWDVLDATPGLANRAGPRGA
                     VARPEWRPQTHFETRGQKLGHGVWDLLYDRD"
     gene            3105..4943
                     /locus_tag="VLM17_02070"
     CDS             3105..4943
                     /locus_tag="VLM17_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006387463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HSR64376.1"
                     /translation="MDTALTLTTDMKLVLGLVGFTMVMFVFERIRADVVALVVLVLLG
                     LTRLVAPEDLFRGFSSDAVINVIATMILGMGLDRTGALNRLASWLLRRANGIERRLLL
                     FSSAIAGINSSIMQNTSVTALYLPIASRLSARTGIPLSRLLMPIAAAIIMGGGLTMVG
                     NSPLILLNDLLVSANANLPSGVATLKPLHMFAPLPIGLALLVAGLAYFHFFGARLLRE
                     DGDKGVTPARTQSYFARTYGIEGDVYELTVSADSPLVGMSLGEAEALHGAPLLLALRT
                     GNESRLAPPADARIWVGSVLGAMGPRQEVADFAQNNFLRMSTRLREFGDLFNPSRAGI
                     SEAVVPPTSRYIGKTPAELQLRKQYGISLLAINRDKQVITENVRNQALRTGDMLVLHS
                     IWSDLGDVAQTRDIVVVTDYPKGEQRPHKFRVAMVIFGLTMLIALSSRIPASIALMTG
                     VAGMLVTGVLKMDEAYAAISWKTVFLMACLIPLGWAMDSSGAAAWVAGHTIERLPAGM
                     PVWVIELVLALLTTGFSLVISHVGATIVMVPLAINLALAVSGNPTAFALIVALSASNN
                     FMTASNPSVSMITGPADYTPAELWRAGAPLSLVYTTIVVIAVNLMF"
     gene            complement(4963..5316)
                     /locus_tag="VLM17_02075"
     CDS             complement(4963..5316)
                     /locus_tag="VLM17_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HSR64377.1"
                     /translation="MAPLEAVPDGGLAAIEARIDGDDEMLIVHRRGGHVRAWLDVCPH
                     AGRRLEWAPGQFLRAKNGDLVCAVHGATFELDGGTCVAGPCRGERLRAVAVEVRDGGV
                     WLAGHAPGARDPEAV"
     gene            5486..5719
                     /locus_tag="VLM17_02080"
     CDS             5486..5719
                     /locus_tag="VLM17_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64378.1"
                     /translation="MRSPRKPRHPLARIALGVLGLGVLALLVFFSVFVGTAMLGAGLL
                     YKLWKQRNQPLAKRPRVIDGQFHAVRRPALPSA"
     gene            5748..6464
                     /locus_tag="VLM17_02085"
     CDS             5748..6464
                     /locus_tag="VLM17_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSR64379.1"
                     /translation="MSADLFPPLLPVRLPVRGSDAGFPVHRVYCVGRNFADHAREMGA
                     AVPVRRGAPVFFLKPADALVTGGVVPFPRGTHELHHEVELVVALGRDAPPGLLDLREA
                     QSLVFGYGVGLDLTRRDLQAAAKAQGLPWDTGKAFDDSAPISALVPAGQAGELAARTL
                     TLMVNRQVRQHGALADLIWNVPEILRELSALYALRAGDLVFMGTPAGVGPLQVGDTFV
                     ASLDGVVELQGRIAPAAMVR"
     gene            6506..6898
                     /gene="mscL"
                     /locus_tag="VLM17_02090"
     CDS             6506..6898
                     /gene="mscL"
                     /locus_tag="VLM17_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010370977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HSR64380.1"
                     /translation="MGMLSEFREFVAKGNVVDLAVGVVIGAAFGKIVTALVDGIVMPL
                     VGVVTGGVSVSDWKYVIHPAVIDAAGRVTTPEVAVAYGTLIQTIVDFLIIAFVIFLFL
                     KAYNRIRTPPATETEVQLLREIRDALRR"
     gene            6996..8399
                     /locus_tag="VLM17_02095"
     CDS             6996..8399
                     /locus_tag="VLM17_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017112628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR64381.1"
                     /translation="MRVTPLLLALLASLSAGSAAAETRIPDKALATAAQLRERALADD
                     TGWKVVESLTTEVGPRLAGSEADARAVEWAKAKFKALGFDKVWTEPVTFPKWERRGEQ
                     AQVLGAHAQPLVLTALGGSPGGTVEGEVVRFADLDALKAAPAGSLAGKIAFVDYQMQR
                     YRDGHDYRNGGGIRHAGPSEAIRKGAAAFLMRSAGTDTSRAPHTGVTGFEDGLKPIPS
                     AALSTIDAAQLARLVALDPHTRVRVALDCGWDGEYTSQNVIGEITGRKHPEQVVLLGG
                     HLDSWDPGTGAIDDAAGIGISMAAAALLKPLRPARTIRVVAYSNEERGLYGGIAYAKA
                     HAGEVARHAIVSESDFGSGHIYSFNSNAPDAARPAIAQIAEALRPLGIESADGEGGPE
                     SDVGPIAQLGATWASLSHDGTHYFDVHHTAEDTLDKVDPKDLAQNVAAYAVFAWLAAQ
                     AEGDFGSAPRAAEPAKH"
     gene            8407..>9136
                     /locus_tag="VLM17_02100"
     CDS             8407..>9136
                     /locus_tag="VLM17_02100"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSR64382.1"
                     /translation="MAVQRYDEFGGVPVDPLTSLYRLGAGGPNLTTALAAAAATGRRV
                     ALLHIDVDDFGAINRNMGELVGEQALSAIAQRLHKAMPAGGWLWRIGGDQFLAGIGYR
                     HDEPDAVALAERLRDAFETPLSLPPYTLPVSLSIGVAIYPDHAHDAAALLAAAEQALR
                     RARREARSGVDLFSAEEAAAESGETISRTLRVAMERGEFQLFYQPTVNGHDGSIEGMN
                     ALLRWQNRDHGLVRPNRFLELVERA"
BASE COUNT         1290 a         3368 c         3202 g         1276 t
ORIGIN      
        1 gacattggtg aagccgtaca ggctggggtc ggcgatgatt tcgtgcagca ggctgaaggc
       61 atcgagcggg atcacccgca ggccctgcga cgcgaggccg tcgaacagcg cggcgttgta
      121 gccggccgcc agctgcgtgc cgaagccggc ggtcagcggg ctgccggagt aggccggggt
      181 gacgcccagg tcggggacgt tggcgaccag cacgtagcgc gcgccggcct gctgcagggc
      241 gccgaccagg ccgatttcgc cggtcaccgc cgcgccgatc gtcgccgggg cggtcgccgg
      301 gtcggtgatc gagaacaggt cgttggcgcc gccccacacg ctgtacagcg cgttcggatc
      361 ggcgtggccg ccattggcgg ccaggtaggt gccgagctgg gtggccagcg agggaatcgg
      421 gccgaggccg ctgctgccgt cgacgcccac gcgcgcgccg ccgaccgcat agtcggtacc
      481 gccctggttg tcgctggcgg gattgccgcc gtagtaaccg gcgacgtatt cgccccacac
      541 cagccccggg ttggtggtga agcggccgat cagcgcgccg ttcgggccga gcatctgcac
      601 cagcgccggg cggaaatggc cgctgtcgga gaggctgtcg ccgaagaaca ccgtgttcga
      661 gaactgggtg tagctgtctg ccgcgaaagc cggcgtcgcg gccaccgcga gcgcggcggc
      721 gaggagggag cggagcggac ggaaggacat gcgggttcct ctggcggttg ggccggtcgc
      781 gcacgatacg cccccggatg gcgccgcatc gtttcacgaa ccccggccgg cgctcaagca
      841 gcgggccggc tggcccggcg cgcccgcaac gccgacaatg gcggcatgga catccgcttg
      901 aatggcgcgg cgcacacgct cccgcgcgac tgcaccatcg cccgcctgct ggaggaggcg
      961 ggactggccg gccggcgggt cgcggtcgag gtcaacggcg agatcgtgcc gcgcggcgcg
     1021 catgcccggc gcgcgctgga ggacggcgac cgggtcgaga tcgtgcacgc gctcggcggc
     1081 ggctgaggcg gcgggccgcg cagtccggaa tcaagaacgc gcgatgcgcc acctgcggga
     1141 ggaagtccgg ccatcccgga ggcggggagc ccgccgggat ccgtggcttt gcgaccccgg
     1201 ctcgcgccgg gtgtgccctg gtcaaccgca cgatgggcgc atcgcgcgtg agccgccgtg
     1261 gcggtggcca ggggtggtta ccgtcgccac gacacgctcc cttgcctgta cgccaaagcc
     1321 gaaccgggcc ggacacggga cgccacaccc cgctgctacc atgtgcggat gacccagcct
     1381 gcccacgccg ccggccccct ggccggcgtt gaaaccctgt ccgaccccct cgtcatcgcc
     1441 ggccgcagct accgttcgcg cctgctcacc ggcaccggca agttcaagga cctcgacgaa
     1501 acccgccgcg ccaccgaggc cgccggcgcg cagatcgtca ccgtcgcgat ccgccgcacc
     1561 ccgctcttca acaaagcggt cggccagaac ccgggcgagc ccaacctgct cgacgtcctg
     1621 ccgccggacc gctacaccat cctgcccaac accgccggct gctacaccgc cgaggacgcg
     1681 gtgcgcacct gccggctcgc gcgcgagctg ctcgacggcc accccctggt caagctcgag
     1741 gtgctgggcg accagaagac gctgttcccc gatgtcgtgc agacgttgaa ggccgccgaa
     1801 gtgctggtcg ccgacggctt ccaggtgatg gtgtacacca gcgacgatcc gatcctcgcc
     1861 cgccgcctgg aagagatcgg ctgcgtcgcg gtgatgccgc tggccgcgcc gatcggctcc
     1921 ggcctcggca tccagaaccg gtggaacctg ctggaaatcg tcgagaacgc cagggtgccg
     1981 atcatcgtcg atgccggcgt gggcaccgcc tcggacgcgg cgatcgcgat ggagctcggc
     2041 tgcgacggcg tgctgatgaa caccgcgatc gccggcgccc gggatccggt gctgatggcg
     2101 catgcgatga agctggcggt cgaagccggc cgcgccgcgt ccagggccgg acgcatcccg
     2161 cgcaagcgtt tcgccagcgc gtcctcgccc atcgacgggc tggtcgcctg agccgatcgc
     2221 ggcgcgcatg accgatccgt tctccagcag cggcgcgaaa acgccgccca agcccttcac
     2281 cgtcgaggaa ggccaccgca aggtgcgcag cttcgtgctg cggcaggggc gattcacccc
     2341 ggcgcagcag cgcgcgttcg acgaactgtg gccgcgcttc ggcctcgact acctgccgtc
     2401 cgcgcgcggg gggcagccgc gcgacttcga cggggtgttc ggccgccacg cgccgcgcgt
     2461 gctggaaatc ggcttcggca acggcgaggc cctgcgttac gctgcgcgcc acgacccgtc
     2521 gcgcgacctg atcgggatcg aggtgcacgc gcccggcgtc ggccgcctgc tcaacgcgct
     2581 ggccgacgac ggggccacca acgtgcgcct gtaccaccac gacgcggtcg aggtgctgca
     2641 gcacgagatc gccgacggcg cgctcgacga gatccgcatc tatttccccg acccctggca
     2701 caagaagcgc caccacaagc gccgcctggt gcaaccggac ttcgcggcgc tgctcgtgcg
     2761 caagctcgcg cccggcgggc gcttgcacct cgccaccgat tggcacgact atgccgagca
     2821 gatgtgggac gtgctcgatg ccacgcccgg cctggcgaat cgcgccggcc cccgcggcgc
     2881 cgtggcgcga cccgagtggc gcccgcagac ccatttcgag acgcgcggac agaaactcgg
     2941 tcacggcgtc tgggatctgc tctacgacag ggattaggga ccagggatcc gggatgaggg
     3001 acaggtgcaa ggccgaaccc gcgacgaccc gcccccccgg cacgacgccc gccgcgcgcg
     3061 cggcgcgttc ctcccgccac tagcccccgg ccgctagccc cggaatggac accgcgctga
     3121 cgctcaccac cgacatgaag ctcgtgctcg ggctggtggg cttcaccatg gtgatgttcg
     3181 tgttcgagcg catccgcgcc gacgtggtcg cgctggtggt gctggtgctg ctcggattga
     3241 cccgcctggt cgcgccggaa gacctgttcc gcggcttctc ctccgacgcg gtgatcaacg
     3301 tcatcgcgac gatgatcctc ggcatgggcc tggaccgcac cggcgcgctc aaccggctcg
     3361 ccagctggct gctgcggcgc gcgaacggca tcgagcgccg cctcctgctg ttcagttcgg
     3421 cgatcgccgg catcaactcc tcgatcatgc agaacacctc ggtgacggcg ctctacctgc
     3481 cgatcgcctc gcgcctgtcg gcgcgcaccg gcatcccgct gtcgcgcctg ctgatgccca
     3541 tcgccgcggc gatcatcatg ggcggcggcc tgaccatggt cggcaactcg ccgctgatcc
     3601 tgctcaacga cctgctggtc tcggccaacg ccaacctgcc ctccggcgtg gcgacgctca
     3661 agcccctgca catgttcgcg ccgttgccga tcggcctcgc gctgctggtc gccgggcttg
     3721 cctacttcca cttcttcggc gcccggctgc tgcgcgagga cggcgacaag ggcgtcaccc
     3781 ccgcgcgcac gcagagctac ttcgcgcgca cctacggcat cgagggcgac gtctacgaac
     3841 tcaccgtcag cgccgacagc ccgctggtcg gcatgtcgct gggcgaagcc gaagcgctgc
     3901 acggcgcgcc gctcctgctc gcgctcagga ccggcaacga gtcgcgcctc gcgccgccgg
     3961 cggacgcgcg catctgggtc ggcagcgtgc tcggcgcgat ggggccgcgc caggaagtgg
     4021 ccgacttcgc gcagaacaat ttcctgcgga tgtcgacgcg gctgcgcgag ttcggcgacc
     4081 tgttcaatcc cagccgcgcc ggcatcagcg aggcggtggt gccgccgacc tcgcgctaca
     4141 tcggcaagac gccggccgaa ctgcagctgc gcaagcagta cggcatcagc ctgctggcga
     4201 tcaaccgcga caagcaggtg atcaccgaga acgtgcgcaa ccaggcgctg cgcacggggg
     4261 acatgctggt gctgcacagc atctggagcg accttggcga cgtcgcgcag acccgcgaca
     4321 tcgtcgtggt caccgactac ccgaagggcg agcagcggcc gcacaagttc cgggtggcga
     4381 tggtcatctt cgggctgacg atgctgatcg cgctgtcgtc gaggatcccg gcctcgatcg
     4441 cgctgatgac cggcgtcgcc ggcatgctgg tcaccggcgt gctgaagatg gacgaggcct
     4501 acgccgcgat cagctggaag acggtgttcc tgatggcctg cctgatcccg ctgggctggg
     4561 cgatggacag cagcggcgcg gcggcctggg tcgcggggca caccatcgag cgccttcccg
     4621 cgggcatgcc ggtgtgggtg atcgaactgg tgctggcgct cctcaccacc ggcttctcgc
     4681 tggtgatcag ccatgtcggc gcgaccatcg tgatggtgcc gctggcgatc aacctcgccc
     4741 tggcggtgag cggcaacccg accgcgttcg cgctgatcgt cgcgttgtcg gcgtccaaca
     4801 acttcatgac cgcgtccaac ccgtcggtgt cgatgatcac cggcccggcc gactacacgc
     4861 cggccgaact gtggcgcgcg ggcgcgccgc tgtcgctggt gtacacgacg atcgtggtga
     4921 tcgcggtcaa cctgatgttc tgagcggctg ccccgccgcg acctacaccg cttccggatc
     4981 gcgcgcgccg ggcgcgtgtc ccgccagcca cacgccgccg tcgcgcacct ccaccgccac
     5041 cgcgcgcagg cgctcgccgc gacagggccc ggcgacgcag gtgccgccgt cgagttcgaa
     5101 ggtcgcgcca tgcaccgcgc acacgaggtc gccgttcttc gcgcgcagga actggccagg
     5161 cgcccattcc agccggcggc cggcgtgcgg gcagacatcg agccaggcac gcacgtgccc
     5221 gccgcggcgg tgcacgatca gcatttcgtc gtcgccatcg atgcgggcct cgatggcggc
     5281 caggccgccg tcgggcacgg cctcgagcgg ggccagcggt tcgcccgcgg catcggccgg
     5341 gtcggcgtca cggtttaacg aagtcctcac acccttgcct gtgcgccgcc ggatactcgc
     5401 cgtcccgcgc attgtgtcac gacctccggg cccagccgtg ttcgtcttcc gctcctccgt
     5461 ttcgcgtcgc gccttcttcc atcgcatgcg ttcgccgcgc aagccgcgcc atccgctcgc
     5521 gcgcatcgcg ctcggcgtgc tcgggctcgg cgtgctcgcg ctgctggtgt tcttcagcgt
     5581 gttcgtcggc acggccatgc tcggcgccgg cctgctgtac aagctgtgga agcagcgcaa
     5641 ccagccgctg gcgaagcgcc cgcgggtgat cgacggccag ttccacgcgg tccgccgccc
     5701 ggccctgcct tcggcatgac cgccgcgtgc gcggcggcgc ggcgcgcgtg agcgccgacc
     5761 tgttcccgcc gctgctgccg gtgcgcctgc cggtacgcgg cagcgacgcg ggattcccgg
     5821 tccaccgcgt ctactgcgtc ggccgcaact tcgccgacca tgcgcgcgag atgggcgcgg
     5881 cggtgccggt ccggcgtggc gcacccgtct tcttcctcaa acccgcagac gcgctggtga
     5941 ccggcggcgt ggtgccgttc ccgcgcggca cccacgaact gcaccatgaa gtcgaactgg
     6001 tggtcgcgct cggccgcgat gcgccgcccg gcctgctcga cctgcgcgag gcgcagtcgc
     6061 tggtgttcgg ctacggcgtc ggcctcgacc tcacccgccg cgacctgcag gccgcggcca
     6121 aggcccaggg cctgccgtgg gacaccggca aggccttcga cgattccgcg ccgatcagcg
     6181 cgctggtgcc ggccggccag gccggcgagc tggcggcgcg cacgctcacc ctcatggtca
     6241 accgccaggt gcgccagcac ggcgcgctcg ccgacctgat ctggaacgtg ccggagatcc
     6301 tgcgcgagct gtccgcgctg tacgccctgc gcgcgggcga cctggtgttc atgggcacgc
     6361 ccgccggcgt cggcccgctg caggtcggcg acaccttcgt cgccagcctg gacggcgtgg
     6421 tcgaactgca ggggcggatc gccccggccg cgatggtgcg ctaggctgcc gcggcagggg
     6481 gtcaccgcca gcggaggatc acggcatggg catgctcagt gagttcaggg agttcgtcgc
     6541 caagggcaac gtcgtcgacc tcgcggtcgg cgtggtcatc ggcgccgcgt tcggcaagat
     6601 cgtcaccgcg ctggtcgacg gcatcgtcat gccgctggtg ggcgtggtca ccggcggcgt
     6661 cagcgtgtcg gactggaagt acgtgatcca tcccgcggtc atcgacgccg ccggcagggt
     6721 gacgacgccc gaggtggccg tggcctacgg caccctgatc cagacgatcg tcgacttcct
     6781 gatcatcgcc ttcgtcatct tcctgttcct caaggcctac aaccgcatcc gcacgcctcc
     6841 cgcgacggag acggaggtgc aactgctgcg cgagatccgc gacgcgctgc gccgctgagc
     6901 gcctcgccgc cgccgggcat gacctgcggc acgacgaacc ggaagccgcg ggctgctacc
     6961 ctcgcggctt cttttttgcg ccaaccggag cccccatgcg cgtcacgccc ctgctgctcg
     7021 ccctgctcgc ctccctctcc gccggcagcg ccgcggccga aacgcgcatc ccggacaagg
     7081 cgctcgccac ggcggcgcag ctgcgcgaac gcgcgctcgc cgacgacacc ggctggaagg
     7141 tggtcgagtc gctgaccacc gaggtcggcc cgcgcctggc cggcagcgag gcggatgcgc
     7201 gcgcggtcga atgggcgaag gcgaagttca aggcgctggg cttcgacaag gtgtggaccg
     7261 agccggtcac cttcccgaaa tgggaacgcc gcggcgagca ggcgcaggtg ctcggcgcgc
     7321 acgcgcagcc gctggtgctg accgcgctcg gcggcagccc gggtggcacg gtcgagggcg
     7381 aggtggtgcg cttcgccgac ctcgatgcgc tgaaggcggc gccggccggt tcgctcgccg
     7441 gcaagatcgc cttcgtcgac taccagatgc agcgctaccg cgacggccac gactaccgca
     7501 acggcggcgg catccgccac gccggtccgt cggaggccat ccgcaagggc gccgcggcct
     7561 tcctgatgcg ctcggccggc accgacacct cgcgcgcgcc gcacaccggc gtgaccggtt
     7621 tcgaggacgg cctcaagccg atcccgtcgg cggcgctgtc gaccatcgac gccgcgcaac
     7681 tcgcgcgcct ggtcgcgctc gatccgcaca cgcgcgtgcg cgtggcgctc gactgcggct
     7741 gggacggcga atacacctcg cagaacgtca tcggcgagat caccgggcgc aagcacccgg
     7801 agcaggtcgt gctgctcggc ggccacctcg attcgtggga tccgggcacc ggcgccatcg
     7861 acgacgccgc cggcatcggc atctcgatgg cggccgccgc gctgctcaag ccgctgcgcc
     7921 cggcgcgcac catccgcgtg gtcgcctatt ccaacgagga gcgcggcctg tacggcggca
     7981 tcgcctacgc caaggcgcac gccggcgaag tcgcgcgcca cgcgatcgtg tcggaaagcg
     8041 acttcggctc cggccacatc tacagcttca acagcaacgc gccggacgcg gccaggccgg
     8101 cgatcgcgca gatcgcggaa gcgctcaggc cgctcggcat cgaatcggcc gacggcgaag
     8161 gcggcccgga atcggacgtc ggcccgatcg cccagctcgg cgcgacctgg gcttcgctca
     8221 gccacgacgg cacgcactac ttcgacgtgc accacaccgc cgaggacacc ctcgacaagg
     8281 tcgacccgaa ggacctggcg cagaacgtcg ccgcgtacgc ggtgttcgcc tggctcgccg
     8341 cgcaggccga aggcgacttc ggcagcgcgc cgcgcgcggc ggagccggcg aagcactgag
     8401 cccggcatgg cggtgcagcg ctacgacgag ttcggcggcg tcccggtcga tccgctgacg
     8461 tcgctgtacc gcctcggcgc gggcgggccc aacctcacca ccgcgctcgc cgccgccgcg
     8521 gcgaccgggc ggcgggtggc gttgctgcac atcgacgtcg acgacttcgg cgcgatcaac
     8581 cgcaacatgg gcgaactggt cggcgagcag gcactgtcgg cgatcgccca gcgcctgcac
     8641 aaggcgatgc cggccggcgg ctggctgtgg cgcatcggcg gcgaccagtt cctcgccggc
     8701 atcggctacc gccacgacga gccggacgcg gtcgccctgg ccgagcggct gcgcgacgcg
     8761 ttcgagacgc cgctgtcgct gccgccctac acgctgccgg tctcgttgtc gatcggcgtg
     8821 gcgatctacc ccgaccacgc gcacgacgcg gcggcgctgc tggctgccgc cgagcaggcg
     8881 ctgcggcgcg cgcgccgcga ggcgcgcagc ggcgtcgacc tgttctcggc ggaggaggcc
     8941 gcggccgagt cgggcgaaac gatctcgcgc acgttgcggg tggcgatgga gcgcggcgag
     9001 ttccagctct tctaccagcc gacggtgaac ggccacgacg gcagcatcga aggcatgaac
     9061 gcgctgctgc gctggcagaa ccgcgaccac ggcctggtgc gccccaaccg cttcctcgaa
     9121 ctggtcgaac gcgccg
//
LOCUS       DATIQC010000095         2636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_677775, whole genome shotgun sequence.
ACCESSION   DATIQC010000095 DATIQC010000000
VERSION     DATIQC010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_677775"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..216
                     /locus_tag="VLM17_02105"
     CDS             <1..216
                     /locus_tag="VLM17_02105"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HSR64383.1"
                     /translation="GRVGIARGKLKGTLNGESDSDTSTKLYFGVGAGYDFNKSFGLSL
                     NWDHLRGSGQDVDVKSNVLTLGAEYRF"
     gene            complement(278..1459)
                     /locus_tag="VLM17_02110"
     CDS             complement(278..1459)
                     /locus_tag="VLM17_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64384.1"
                     /translation="MERDDDRALATALMRGFAERTGLAGGAPVRRYLWTDAFAVCNFL
                     DLGETALAARLVEQVHAVLGSHRPDDARSGPLSGLDAAAARRHPTQGGLRIGKPLPER
                     APDAPYDAALEWERDGQYFHYLTRWMHALDQYAQRAGVADANRWARELARTAVQAFVT
                     GTEGAPRMAWKMSIALDRALVPSMGQHDPLDGLVTCLQLRAHTPPGSGGPTLAPELRS
                     LAALLAGTNLLTDDPLGVGGLLVDAYRLAQLLHEKPGDDALLGLLLAASAGGLHAWLQ
                     QRPFARASGERLAFRELGLAIGLGAAARLWRLLEHDPASITGQPAVRASLDALIAQLP
                     LARRISGHWSEPAQRASAGWRAHEDINAVMLATSLAPAGYLDFPRSEAAPVRSAVRGQ
                     R"
     gene            1580..>2636
                     /locus_tag="VLM17_02115"
     CDS             1580..>2636
                     /locus_tag="VLM17_02115"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR64385.1"
                     /translation="MSPTASSTPARLLAAWLLLALPLAGCARKPAATPAPTSAGAARI
                     ATDVRTLSADAMQGRLTGSAGFDRAAQVVADRFRALGLQPAGDGGSYFQRVPLLASTR
                     VADGARFVVVRPDRDIVLRVRDQFLPMPGFARESATVRAPAVFVGQGVEAPDLGHDDF
                     AGLDLHGRVAVLFGGAPARFDADRRAFHTSMREKLRAIAAHGAIGAVFVDTAAQEAEA
                     PWAQAAAAFDRPDMRLRGADGHALDDEPQLQVVARVSFAAADLLFDGSGHTAAELAQA
                     VERERQRGFVLPATLDLAARSTIAPLDGRNVLARLPGRGAAAAPQVLYSAHLDHLGVA
                     ARGNGDRVHHGALDNALG"
BASE COUNT          324 a          995 c          975 g          342 t
ORIGIN      
        1 ggccgcgtcg gtatcgcccg cggcaagctc aagggcaccc tgaatggcga gagcgacagc
       61 gacacctcga ccaagctgta tttcggcgtg ggtgccggtt acgacttcaa caagagcttc
      121 ggcctgagcc tcaactggga tcacctccgc ggttcgggcc aggacgtcga cgtgaagtcg
      181 aacgtgctca ccctgggcgc cgaatatcgc ttctgatcca ccggcggcac ccgccgctag
      241 cgtcagcgaa cggccaccgc aaggtggccg ttttttttca gcgctgcccc cgcaccgccg
      301 agcgcaccgg cgcggcctcg ctgcgcggga aatcgaggta gcccgcgggg gcgaggctgg
      361 tggccagcat cacggcgttg atgtcctcgt gcgcgcgcca gccggcggag gcccgctgcg
      421 cgggctcgct ccagtggccg ctgatccgcc gcgcgagcgg tagttgcgcg atcagggcat
      481 cgaggctggc gcggaccgcc ggttgcccgg tgatcgatgc ggggtcgtgc tcgagcagcc
      541 gccacagccg cgccgccgcc cccaggccga tggcgagccc cagttcgcgg aacgccagcc
      601 gctcgccgct ggcgcgcgcg aacggccgct gctgcagcca ggcgtgcagg ccaccggcgg
      661 aggcggccag cagcaggccg agcaacgcat cgtcgcccgg cttctcgtgc agcagctggg
      721 cgagccggta ggcgtccacc agcaggccgc ccacgccgag cggatcgtcg gtgaggaggt
      781 tggtgccggc cagcagcgcg gcgaggctgc gaagttccgg cgccagcgtc ggtccgccgc
      841 tgcccggcgg cgtgtgcgcg cgcagctgca ggcaggtgac gaggccatcc agcggatcgt
      901 gctggcccat cgacggcacc agcgcgcggt cgagcgcgat gctcatcttc caggccatgc
      961 gcggcgcgcc ctcggtgccg gtcacgaacg cctgcaccgc ggtgcgggcg agctcgcgcg
     1021 cccagcggtt ggcgtcggcg acgccggcgc gctgcgcgta ctggtccagc gcgtgcatcc
     1081 agcgcgtcag gtagtggaag tactggccgt cgcgttccca ttccagcgcg gcgtcgtacg
     1141 gagcgtcggg cgcgcgttcg ggcagcggct tgccgatccg cagcccgccc tgggtcggat
     1201 ggcggcgcgc ggcggcggcg tcgaggccgc tcagcgggcc gctgcgcgcg tcgtccggac
     1261 gatggctgcc gagcaccgcg tgcacctgct cgaccagtcg cgccgccagc gccgtctcgc
     1321 ccaggtcgag gaagttgcac accgcgaagg catcggtcca caggtagcga cgcacgggcg
     1381 cgccgccggc gagcccggta cgttcggcga acccgcgcat cagcgcggtc gccagcgccc
     1441 gatcgtcgtc ccgctccacc tcgcgctccg cctcggttcc gccgtcgatg attgcgggcc
     1501 gcgtggcagt gggccgtgaa catggcgcgg acgccggtcg cgcgtgctag cgtcgcgcgt
     1561 cgccaagccg aacgcctgca tgtcgccgac cgcatcgtcc acgcccgccc gcctgctcgc
     1621 cgcctggctg ctgctcgcac tgccgcttgc gggctgcgcg cgcaagcccg ccgccacgcc
     1681 tgcgccgacg agcgcgggcg ccgcgcgaat cgccaccgac gtgcgcacgc tgtccgcgga
     1741 cgccatgcag ggccggctga ccggcagcgc gggcttcgac cgcgccgcgc aggtggtcgc
     1801 cgaccgtttc cgcgcactcg gcctgcagcc cgcgggcgat ggcggcagct acttccagcg
     1861 cgtgccgctg ttggcctcca cgcgggtagc ggacggcgcg cgtttcgtcg tcgtgcgtcc
     1921 cgatcgcgac atcgtcctgc gcgtgcgcga ccagttcctg ccgatgccgg gcttcgcgcg
     1981 cgaatcggcg acagtgcgcg cgccggcggt gttcgtcggc cagggcgtgg aggcgccgga
     2041 cctcggccac gacgacttcg ccggcctcga cctgcacggc cgcgtcgcgg tgctgttcgg
     2101 cggcgcgccg gcgcgcttcg atgccgaccg ccgcgcgttc cacacgtcga tgcgcgaaaa
     2161 gctgcgtgcg atcgccgcgc acggcgcgat cggcgcggtg ttcgtggata cggccgcgca
     2221 ggaagcggaa gcgccgtggg cgcaggccgc cgccgcgttc gaccgaccgg acatgcggct
     2281 gcgcggcgcc gacggccacg cgctcgacga cgagccgcaa ctgcaggtcg tcgcacgggt
     2341 gagcttcgcc gccgcggacc tgctcttcga cggcagcggc cacaccgcgg ccgagctcgc
     2401 acaggccgtg gagcgggagc gccagcgcgg cttcgtgctg ccggcgacgc tcgacctcgc
     2461 cgcgcgcagc acgatcgcgc cgctcgacgg ccgcaacgtg ctcgcccgcc tgcccggccg
     2521 cggcgcggcc gccgcgccgc aggtgctgta cagcgcgcac ctcgaccacc tcggggtcgc
     2581 cgcgcggggc aacggcgacc gcgtgcacca tggcgcgctc gacaacgcgc tcggcg
//
LOCUS       DATIQC010000096         5921 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_430516, whole genome shotgun sequence.
ACCESSION   DATIQC010000096 DATIQC010000000
VERSION     DATIQC010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5921
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430516"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1083)
                     /locus_tag="VLM17_02120"
     CDS             complement(<1..1083)
                     /locus_tag="VLM17_02120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-54 factor"
                     /protein_id="HSR64386.1"
                     /translation="MKTGLRPQLGQTLNLTPQLLQTIRLLQLTAPQLEMELRQALERN
                     PLLEQEDAEEEAVEGDGAGAQALETAAWDELPEPMFLSGGSYAGDGEDDAAARIAAGE
                     SSDWRQRLLALLALQWRPHTLAMAAFWLDHCDERGYLEVDVHALCQRGATELGVAADE
                     LEVVRQRLLHGEWPGVAAADAGECLRAQLALLPEGKARTFAQRILAGHLDLLAAHDEH
                     ALARALGVSVDEARAAVALILALRPHPVEAVAADTGAIVPDVVAWHAAGRWRVALNER
                     ALPRVRIAPHCERALSDAPGQHAALRGLMEEARWLVRGVAMRNETLLRTTQVLVERQQ
                     GFLERGDEAIAPLTLKEVADAIGMHES"
     gene            complement(1213..1881)
                     /locus_tag="VLM17_02125"
     CDS             complement(1213..1881)
                     /locus_tag="VLM17_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64387.1"
                     /translation="MRVLICDDHTLVRAGLRRLLEGFEGVEVVAEAANGDEAVAKSRQ
                     HLPDVVLLDLSMPGRGGFEALDELRQVVPQSAVVIMSMHDDPMLVRAALARGASGFVV
                     KEGAPAELEIALRAAASGRTFLSPQVSAPQLQGARARNGGAAPGKGDVEALPPRQRQI
                     LVALGAGRTTKQIASDLGISIKTVETHRARIMEALGCRNAVELLRLAVREHDRTSPAP
                     HRAN"
     gene            complement(2011..2565)
                     /locus_tag="VLM17_02130"
     CDS             complement(2011..2565)
                     /locus_tag="VLM17_02130"
                     /inference="COORDINATES: protein motif:HMM:NF028133.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSR64388.1"
                     /translation="MNAREADAALFGDALACDEVRPARFEPDAPDPAALHAEALRAEA
                     FLQALALVEDSRGEDPEEHGPTALALQRIEARLDLLTTLIGSVLHGPGRDPPCPLRWS
                     ALGVRLPGHAAPGTAGWLRLQPSDALPQVLRLPVRVLAGEDGADGPRLWLRFEGLSPA
                     LAAALERHLFRVHRREIAERRRPR"
     gene            complement(2562..2873)
                     /locus_tag="VLM17_02135"
     CDS             complement(2562..2873)
                     /locus_tag="VLM17_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64389.1"
                     /translation="MSKHAMVLPILPAAEIRGAVAAGDWTRAGALVAGHDAQVRAAFV
                     DPPPAECLPAWRDLLVEQQALMLELQQQRDAAGEALARLQRERRAAHLYLSQSRRLDE
                     E"
     gene            complement(2884..3279)
                     /gene="fliS"
                     /locus_tag="VLM17_02140"
     CDS             complement(2884..3279)
                     /gene="fliS"
                     /locus_tag="VLM17_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008575950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HSR64390.1"
                     /translation="MNPRAYAAQYRQTAVSSAVLEASPHQLVALMFAGFRDRVQLAIA
                     SLERGDTARKGQSITEAIAILGGLDGALDLNAGGSIAAGLQSLYDYLQRRLVEANLHN
                     DPAVLREADALIAEVQSAWNAIAPAAPAP"
     gene            complement(3291..4628)
                     /gene="fliD"
                     /locus_tag="VLM17_02145"
     CDS             complement(3291..4628)
                     /gene="fliD"
                     /locus_tag="VLM17_02145"
                     /inference="COORDINATES: protein motif:HMM:NF018852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HSR64391.1"
                     /translation="MASIVSAGIGSGLDVNSLVSQLVSAERAPADNRLNSDTSTTNAQ
                     ISAFGALGSVLSGLQTALDAFKAAGADPGRKATVADGAGFTASAATTAVPGSYQVRVE
                     KLATTQKLQSAAVASGTQVGYGSLAIQVGTDAAVNVTVAQGKGTLADIRDAINAATGS
                     QGVTASLVHGDAGDVLVLTSSRSGANGALSITASGGDGGLSVLNTTGGTLTEVTPAGD
                     AEVWVDGVKRTSASNHLTDLIDGVTLDLTQAQTGVDFKLTVAGDATSLHARVDAFVKA
                     YNTAITTLRTQSASGDKDHAGGPLSGDATPRAIIQALRGAMGSDYSSMANLGLKTAVD
                     GTLTLDGSKLDAALASDAGAVRKAFGDSATYATSLRATLTAYVGDDGLIAGRTKSLND
                     HLKTISTQRDELNRRMTQMETDYRRQFTALDSMMAQMQSTSSFLTQQLASLNR"
     gene            complement(4816..5691)
                     /locus_tag="VLM17_02150"
     CDS             complement(4816..5691)
                     /locus_tag="VLM17_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HSR64392.1"
                     /translation="MSVVNTNVMSLNAQRNLYTNNAGLATSIQRLSSGLRVNSAKDDA
                     AGLAIAERMNAQVRGMNVAIRNANDGISLAQTAEGALGKIGDSLQRMRELAVQSANAT
                     NSSSDRTNLDNEFAQLQSEISRVVGGTSFNGTSLFTGSTSFSFQVGAGTTANDVVSVS
                     RNQLSGGTAGTSGALVSGDATDKVLATITSVSDIAADATAATNAIKDIDVALDKVNSE
                     RATYGAAQNRFESVISNLQISSENVTAARSRIMDADFAKETAELTRTQILTQAGTAML
                     AQANQAPQSVLSLLR"
BASE COUNT          731 a         2053 c         2233 g          904 t
ORIGIN      
        1 ggattcgtgc atgccgatgg cgtcggcgac ttccttcagc gtgagcgggg cgatcgcctc
       61 gtcgccgcgc tcgaggaagc cctgctggcg ctcgaccagc acctgggtgg tacgcagcag
      121 ggtctcgttg cgcatggcga cgccgcgcac cagccagcgc gcctcctcca tcaggccgcg
      181 caacgcggcg tgctggccgg gcgcgtcgga gagcgcgcgc tcgcagtgcg gggcgatgcg
      241 cacgcgcggc agcgcgcgtt cgttgagcgc gacccgccag cggccggcgg cgtgccaggc
      301 gaccacgtcg ggcacgatcg cgccggtgtc ggcggcgacc gcttcgaccg ggtgcggtcg
      361 cagcgccagg atcagggcga cggcggcgcg cgcctcgtcg acggaaaccc cgagcgcgcg
      421 cgccagcgca tgctcgtcgt gcgcggcgag caggtcgagg tgtccggcaa ggatgcgctg
      481 ggcgaaggta cgcgccttgc cttccggcag cagggcgagc tgggcgcgca ggcactcgcc
      541 ggcatcggcg gcggcgacgc ccggccattc gccgtgcagc aggcgctggc gcaccacttc
      601 cagttcgtcg gccgcgacgc cgagttcggt cgcgccgcgc tggcacagcg cgtgcacgtc
      661 cacctcgagg tagccgcgct cgtcgcagtg gtccagccag aacgcggcca tcgccaaggt
      721 atgcgggcgc cactgcagcg cgagcagggc gagcaggcgc tggcgccagt cgctggattc
      781 accggcggcg atgcgcgcgg ccgcatcgtc ctccccgtcc ccggcgtagc tgccgcccga
      841 gaggaacatc ggctccggca gctcgtccca tgccgcggtc tccagcgcct gcgcccccgc
      901 gccgtcgcct tcgaccgcct cctcctccgc gtcctcctgc tccagcaggg ggttgcgctc
      961 aagcgcctgg cgcagctcca tctccagctg cggtgcggtc agctgcagca ggcggatcgt
     1021 ctgcagcagc tgcggcgtca ggttgagcgt ctgccccagt tgcgggcgca agccggtctt
     1081 catcttttcc cctccgcgcg atggcggtcc ccggggaaag attgaacgcc ggctgacgga
     1141 cttcgaatca gggcaaaccg gcgtccatgt cagggcaacc ccgacatggc gtcatgtttc
     1201 cgacgcgctg cgtcagttgg cgcggtgcgg ggccgggctg gtgcggtcgt gctcgcgcac
     1261 cgccagccgc agcagctcga ccgcgttgcg gcagccgagc gcctccatga tccgggcgcg
     1321 gtgcgtttcg accgtcttga tgctgatgcc caggtccgac gcgatctgct tggtggtgcg
     1381 gcccgcgccg agcgcgacca ggatctggcg ctggcgcggc ggcagcgcct cgacgtcgcc
     1441 cttgcccggc gcggcgccgc cgttgcgcgc gcgcgcgccc tgcagctgcg gcgccgagac
     1501 ctgcggactg aggaacgtgc ggccgctggc cgcggcgcgc agggcgatct cgagttcggc
     1561 cggcgcgcct tccttgacca cgaagccgct cgccccgcgc gccagcgccg cccgcacgag
     1621 catcgggtcg tcgtgcatgg acatgatcac gaccgcgctc tgcggcacca cctggcgcag
     1681 ttcgtccagg gcctcgaagc cgccgcggcc gggcatcgac aggtcgagca ggaccacgtc
     1741 gggcaggtgc tggcgcgact tcgccaccgc ctcgtcgccg ttggccgcct cggccacgac
     1801 ttccacgccc tcgaagcctt ccagcaaccg ccggagtccg gcccgcacca gcgtgtggtc
     1861 gtcgcagatc agtactcgca ccgctcgttc cggctccggc ccctgaccgc accttagcgg
     1921 agcggcggtg atggggacaa tgcgcccggc ccggtgcgcg tcgtgggctg ggcggagcgt
     1981 gacggcggtc gcccgccatc cctgaaccgc tcagcgcggc cgccgccgct ccgcgatctc
     2041 gcgccggtgc acgcggaaca ggtggcgctc gagcgcggcc gccagcgccg gcgacaggcc
     2101 ctcgaagcgc agccacaggc gcgggccgtc ggcgccgtcc tcgccggcga gcacccgtac
     2161 cggcaggcgc agcacctgcg gcagggcgtc ggagggctgc aggcgcagcc agccggcggt
     2221 gccgggggcg gcgtggcccg gcaggcggac gccgagcgcg gaccagcgca gcgggcacgg
     2281 cggatcgcgg ccgggaccgt gcagcacgct gccgatcagg gtggtgagca ggtccaggcg
     2341 ggcctcgatg cgctgcagcg cgagcgcggt cgggccgtgt tcctcgggat cctcgccgcg
     2401 gctgtcctcg accagtgcca gtgcctgcag gaaggcctcc gcgcgcagcg cctcggcgtg
     2461 cagcgcggcc gggtcgggcg cgtccggctc gaaccgcgcc gggcgcacct cgtcgcaggc
     2521 cagcgcatcg ccgaacagcg cggcatcggc ctcgcgcgcg ttcattcctc gtcgagccgc
     2581 cgcgactggc tcaggtacag gtgcgcggcg cggcgctcgc gctgcaggcg ggccagcgcc
     2641 tcgccggcgg catcgcgctg ctgctgcagt tccagcatca gcgcctgctg ctcgaccagc
     2701 aggtcgcgcc acgccggcaa gcattcggcc ggcggcggat cgacgaaggc ggcgcgcacc
     2761 tgcgcatcgt ggccggccac cagcgcgccg gcgcgggtcc agtcgccggc ggcgacggcg
     2821 ccgcggatct cggcggcagg caggatcggc aggaccatcg cgtgcttgga catacgactc
     2881 cccttacggc gccggagcgg ccggcgcaat ggcattccag gcggactgca cctcggcgat
     2941 cagcgcatcg gcctcgcgca ggaccgccgg atcgttgtgc aggttggctt cgaccagccg
     3001 tcgctgcagg tagtcgtaca gcgactgcag gccggccgcg atgctgccgc cggcgttcag
     3061 gtcgagcgcg ccgtccaggc cgccgaggat cgcgatcgcc tcggtgatcg actggccctt
     3121 gcgggcggtg tcgccgcgct cgaggctggc gatcgccagc tgcacgcggt cgcggaagcc
     3181 ggcgaacatc agcgcgacga gctggtgcgg gctggcctcc agcacggcgc tggaaacggc
     3241 ggtctggcgg tactgggcgg cgtaggcgcg cggattcatg gcaaggctcc tcagcggttg
     3301 agcgacgcca actgctgggt gaggaaggac gaggtggact gcatctgcgc catcatcgag
     3361 tcgagcgcgg tgaactggcg gcggtagtcg gtttccatct gggtcatgcg gcggttgagt
     3421 tcgtcgcgct gggtcgagat ggtcttcagg tggtcgttga gcgacttggt gcggccggct
     3481 atgaggccgt cgtcgccgac gtaggcagtg agcgtcgcgc gcaggctggt ggcgtaggtc
     3541 gcgctgtcgc cgaacgcctt gcgcaccgcg ccggcgtcgc tggcgagcgc ggcgtcgagc
     3601 ttgctgccgt ccagcgtcag cgtgccgtcc accgcggtct tcaggccgag gttggccatg
     3661 ctggagtaat cgctgcccat cgcgccgcgc aaggcctgga tgatcgcgcg cggcgtggcg
     3721 tcgccgctca gcggcccgcc cgcgtggtcc ttgtcgccgg atgcgctctg cgtgcgcagc
     3781 gtggtgatcg cggtgttgta ggccttgacg aaggcgtcca cgcgcgcatg cagcgacgtc
     3841 gcatcgccgg cgaccgtgag cttgaagtcg acgccggtct gcgcctgggt gaggtcgagc
     3901 gtgacgccgt cgatgaggtc ggtgaggtgg ttgctggcgc tggtgcgctt gacgccgtcg
     3961 acccagacct cggcgtcgcc cgcgggcgtc acttcggtca gcgtgccgcc ggtggtgttc
     4021 agcaccgaca gcccgccgtc gccgccgctg gcggtgatgg acaacgcacc gttcgcgccg
     4081 ctgcgcgacg aggtgagcac gagcacgtcg cccgcgtcgc cgtgcaccag gctggcggtg
     4141 acgccctggc tgccggtcgc cgcgttgatc gcgtcgcgga tgtcggcgag cgtgcccttg
     4201 ccctgggcga cggtgacgtt gaccgcggcg tcggtgccga cctggatcgc cagcgacccg
     4261 tagccgacct gcgtgccgct ggcgacggcg gcggactgca gcttctgcgt ggtcgcgagc
     4321 ttttccaccc gcacctggta gctgccgggc acggcggtgg tcgcggcgct ggcggtgaag
     4381 ccggcaccat cggcgacggt cgccttgcgg cccgggtcgg cgccggcggc cttgaaggcg
     4441 tccagcgcgg tctgcagtcc ggagagcacg ctgccgagcg cgccgaaggc ggaaatctgc
     4501 gcgttggtgg tcgacgtgtc gctgttcagg cgattgtcgg ccggggcgcg ctcggccgag
     4561 accagctggc tgaccaggct gttgacgtcg agtcccgagc cgattcctgc gctgacgatg
     4621 ctggccacga ctgcctccgc gaacgcgccg ggatgaaggg atcacgaccg gcccaatccg
     4681 ggtaacggcg ggtccggcgc gatcttgagg caggcaagga acgtgccggt gttccgccgc
     4741 ggcccccaac gaaaacgggg aggccgaagc ctccccgtcg gtggcacgtc gccgtgccgt
     4801 ccaaccccgc gtggatcagc ggagcaggct gagcacgctc tgcggcgcct ggttggcctg
     4861 ggcgagcatc gcggtaccgg cctgcgtcag gatctgcgtg cgggtcagtt ccgcggtttc
     4921 cttggcgaag tcggcgtcca tgatgcggct gcgggcggcg gtcacgttct ccgaggagat
     4981 ctgcaggttg ctgatcaccg actcgaagcg gttctgcgcc gcaccgtagg tggcgcgctc
     5041 ggagttgacc ttgtccagcg cgacgtcgat gtccttgatc gcgttggtgg cggcggtggc
     5101 gtcggcggcg atgtcgctga cgctggtgat cgtcgccagg accttgtcgg tagcgtcgcc
     5161 gctcacgagg gcaccgctgg tgccggcggt gccgccggac agctggttgc gggagacgga
     5221 caccacgtcg ttggccgtgg tgccggcgcc gacctggaac gagaacgagg tcgaaccggt
     5281 gaacagcgag gtgccgttga agctggtgcc gccgacgacg cgcgagattt ccgactgcag
     5341 ctgggcgaat tcgttgtcca ggttggtgcg gtcgctcgag ctgttggtcg cgttggccga
     5401 ctgcaccgcc agctcgcgca tgcgctgcag cgagtcgccg atcttgccga gggcgccttc
     5461 ggcggtctgc gccagcgaga tgccgtcgtt ggcgttgcgg atggcgacgt tcatgccgcg
     5521 cacctgcgcg ttcatgcgct cggcgatggc gaggccggcg gcgtcgtcct tcgcgctgtt
     5581 gacgcgcagg cccgaggaca ggcgctggat cgaggtcgcg aggccggcgt tgttggtgta
     5641 gaggttgcgc tgggcattca gcgacatcac gttggtattg acgacagaca ttggtggtct
     5701 cctggttaat tgccggcggg cagggccacg tccggggtta ccgcagaaga tgcctttgtg
     5761 tggccccgtc ctctgctgga ctaggtaacg gccaccgccc ggccggcttt agccgggttt
     5821 tcgtcgattc cgtgatggat tgccgggatt gcgccgcgcc gccgccctca cccacggcgc
     5881 gcgcgggccg gccccggcct caggccgccg cggcgagcag c
//
LOCUS       DATIQC010000097         7420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_324629, whole genome shotgun sequence.
ACCESSION   DATIQC010000097 DATIQC010000000
VERSION     DATIQC010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7420
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_324629"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1161)
                     /locus_tag="VLM17_02155"
     CDS             complement(<1..1161)
                     /locus_tag="VLM17_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HSR64393.1"
                     /translation="MDVSHLLDALNPAQREAVTAPPGHYLVLAGAGSGKTRVLTHRIA
                     WLNEVHGVPAHGIFAVTFTNKAAAEMRGRAEQLLRNGARGMWIGTFHGLAHRLLRLHW
                     QEAKLPESFQVLDSDDQLRLVKRVVQQLELDEARFPPRQIAWWINAQKDEGRRPQHLQ
                     PGNDPWLDAMRKAYELYQERCDRAGLVDFAELLLRAHELLRDNAALLAHYRRRFGELL
                     VDEFQDTNAIQYAFVRVLAGDTGRVFVVGDDDQAIYGWRGAKVENVQRFLHDFPGATT
                     LRLEQNYRSSANILDAANAVIAHNPDRLGKQLWTDSGEGEPIDLYAAYNEVDEARFVV
                     ERLRQWVQGGGAYADCAILYRSNAQSRAFEEGLLAEQIPYRVYGGMRFFERAE"
     gene            complement(1254..2072)
                     /locus_tag="VLM17_02160"
     CDS             complement(1254..2072)
                     /locus_tag="VLM17_02160"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HSR64394.1"
                     /translation="MSTWPPLERPPRYPHAWVPFLLGSQLLAAAVWWQFGWQVGLPVL
                     IATHLPFWWGTLKPQSQLFCPVLTRLPTGERKVWLTIDDGPSEQTLPMLDLLDRHGAK
                     ATFFVVGARAAARPELVQEILRRGHTLGNHSETHPVRWFWALPPARLRAQVEHTQAIL
                     EGITGRRPRWFRAVIGMANPFVAAALQRTGLTRVAWCARGFDAVVADPQRVVAMVERH
                     LCPGAIVLMHEGAPHGRNLDGMALLLQRLDALGYRTLLPEELEGAVVRATREAA"
     gene            2129..3055
                     /gene="grxD"
                     /locus_tag="VLM17_02165"
     CDS             2129..3055
                     /gene="grxD"
                     /locus_tag="VLM17_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005419209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HSR64395.1"
                     /translation="MALDPALRARIDTLLRQHRVVLFMKGTPDAPQCGFSARAVAALA
                     PLGLDYAHVDVLADPAIREGIKQFGDWPTIPQLYIDGDLVGGSDIVEQMANSGDLHAA
                     LGLPAPDRTPPTIAVSTAALAMLREALANAGDGYALQVGIDDRYNARLQMAPTDPQAI
                     ATTVDGLRVQFDLASARRADGLSIDWVDDARGRGLVIDNPNAPPKVRELSPVEAAGKI
                     AAGALTLVDVRPAEERAFAQVKTRFETLDGDGVARLEALPKDTPLAFLCHHGGRSAQA
                     AEHFRQQGFREVYNIVGGIDAWADADPAIGKY"
     gene            3396..4826
                     /locus_tag="VLM17_02170"
     CDS             3396..4826
                     /locus_tag="VLM17_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR64396.1"
                     /translation="MLRPTLVALAATLLAAGAQAATKPHFTDDPYPSTYRPIAAQPVL
                     LQHATVLTGTGVRLDDADVLLADGKVAAVGQHLQAPAGATVVDATGKWVTPGLIDVHS
                     HLGVYPSSGVSALSNGNEATAPVTANVWAEHSIWPQDPGFNTARAGGITTLQILPGSA
                     NLIGGRGVTLKNVPSITYQGMKFPGAPWGLKMACGENPKRVYGEKGGPSTEMGNVAGY
                     RAAFIDAAEYLKKNGKPDEDAPAKKKHWWQADPPKADSDADTGGKRDLKMDTLAGAIH
                     GDILVHIHCYRADEMATMLDLAKEFGFRVSAFHHAVEAYKLADRLAAENVCAAMWADW
                     WGFKMEAFDGIQENVALVDRAKNGCAIVHSDSEEGIQRLNQEAAKVIAHAQLAGISIA
                     PERAIQWITRNPAKALGVVDRTGTLEPGKMADAVVWNGTPFSVYAHAEQVYVDGARVY
                     DRNDPRYQPKSDFMLGQPAAVAGGVR"
     gene            4823..6121
                     /locus_tag="VLM17_02175"
     CDS             4823..6121
                     /locus_tag="VLM17_02175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR64397.1"
                     /translation="MSRAVSSAIARSALAVALAACSFAAAAQDLLIRDATVHTATARG
                     TLQHADVLVRGGRIAAVGAHLAAGDAQVVEAHGAPLTPTLFGGITDIGLEEVSGEKTT
                     VDASVALGEGKQMAVRPEFDVTLAYNPDSVLLPVARIEGIGWTVLGAEPTQGGSLIGG
                     QGGVVRLDGSADPVGPRVLFVDLGSAAANLSGDSRAAQWMLLDQLIDEVRGRIRPDSR
                     MALLTPAGRATLARYFGGGGRVIVQANRAADIRQLLRWAGKRHVKVAIAGGVEAWRVA
                     SLIAAAHVPVFVDPLADLPADFDQVGATMENASRLHAAGVAVSFAQFGDASHNARKIR
                     QLAGNAVANGLPWDDGLAGLTRVPAEALGVAGELGTIAPGQRADLVLWSGDPLKVSTV
                     ATQVWLGGDAIPLRSRLTDLRARYLHADDGMPRAYPEGAR"
     gene            6131..6766
                     /locus_tag="VLM17_02180"
     CDS             6131..6766
                     /locus_tag="VLM17_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HSR64398.1"
                     /translation="MNDEATPIRWYFDVVSPFAWLQWPKVQALAVVHRVEPVPVLLAA
                     ILAARGQKGPAEIPGKREFTYRHVLWQARRDGVPLQFPPAHPFNPVAALRTCIAAGST
                     PEAVDAVFGWIWREGQAGDDAGALAPLLARLGLAPADIATDAVRQALRANTDAALAAG
                     VYGVPTLQVGEHLFWGNDAHEFALAALADPGLLRDPEMERLAALPVGAQRR"
     gene            6843..>7420
                     /locus_tag="VLM17_02185"
     CDS             6843..>7420
                     /locus_tag="VLM17_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HSR64399.1"
                     /translation="MRIGLVVDSACDLPAGYFAEHGITILPITVRIGDAMLADQRNEQ
                     ATLEFLHAQIAERGAEAETIPYSVQQIQDLFLQKLVIDYDYVFCMTITRTRSPIFDNC
                     MQASFAILNEYKPVRAAAGHDTPFALRVIDSQNLFSAEGILPVEAVRLRDAGEGAPKM
                     RARLEHLALHTHGYMVPRDLYYLRARARKKGDR"
BASE COUNT         1081 a         2686 c         2662 g          991 t
ORIGIN      
        1 ctcggcgcgc tcgaagaagc gcatgccgcc gtacacgcgg taggggatct gttccgcgag
       61 caggccttcc tcgaacgcgc gcgactgcgc gttgctgcgg tagaggatcg cgcagtcggc
      121 gtacgcgccg ccgccctgca cccactggcg caggcgctcg accacgaagc gcgcctcgtc
      181 gacctcgttg taggcggcgt acaggtcgat cggttcgccc tcgccgctgt cggtccacag
      241 ctgcttgccg aggcggtcgg ggttgtgcgc gatcaccgca ttggcggcgt cgaggatgtt
      301 ggcgctggag cggtagttct gctccagccg cagcgtcgtc gcgccgggga aatcgtgcag
      361 gaagcgctgc acgttctcga ccttggcgcc gcgccagccg tagatcgcct ggtcgtcgtc
      421 gccgaccacg aacacgcgac ccgtgtcgcc ggcgagcacg cgcacgaagg cgtactggat
      481 cgcgttggtg tcctggaact cgtcgaccag cagctcgccg aagcggcggc ggtagtgcgc
      541 cagcagcgcg gcgttgtcgc gcagcagctc gtgcgcgcgc agcagcagct cggcgaagtc
      601 gaccaggccg gcgcggtcgc agcgttcctg gtagagctcg taggccttgc gcatcgcgtc
      661 cagccacggg tcgttgccgg gctgcaggtg ctgcgggcgg cggccctcgt ccttctgcgc
      721 gttgatccac caggcgatct ggcgcggcgg gaagcgcgcc tcgtcgagct cgagctgctg
      781 caccacgcgc ttgaccagcc gcagctggtc gtcgctgtcg agcacctgga agctctccgg
      841 cagcttcgcc tcctgccagt gcaggcgcag caggcggtgg gcgaggccgt ggaaggtgcc
      901 gatccacatg ccgcgcgcgc cgttgcgcag cagctgctcg gcgcggcccc gcatttccgc
      961 cgccgccttg ttggtgaagg tgaccgcgaa aatgccgtgc gcggggaccc cgtgcacctc
     1021 gttgagccag gcgatgcggt gggtgagcac gcgggtcttg ccgctgccgg cgccggcgag
     1081 cacgaggtaa tggcccggcg gcgccgtgac cgcctcgcgc tgggcgggat tgagcgcatc
     1141 gagcaggtgc gagacatcca tcgccgcatt ttacggaagg cggccccgca aagcctggga
     1201 attgcagtgg ggacgcagcc cggcgcgcgt gcgccggcgc tacgggcgtg tgttcaggcc
     1261 gcctcgcggg tcgcccgcac caccgcgcct tccagctcct ccggcagcag cgtgcggtaa
     1321 ccgagcgcgt ccaaccgctg cagcagcagc gccatgccgt cgaggttgcg cccgtgcggc
     1381 gcgccctcgt gcatcagcac gatcgcgccg gggcacaggt ggcgctcgac catggcgacc
     1441 acccgctgcg ggtcggcgac cacggcgtcg aagccgcgcg cgcaccaggc cacgcgcgtc
     1501 aggccggtgc gctgcagcgc cgcggcgacg aagggattgg ccatgccgat caccgcccgg
     1561 aaccagcgcg gccgccggcc ggtgatgcct tcgaggatcg cctgggtgtg ctcgacctgc
     1621 gcgcgcaggc gcgccggcgg cagcgcccag aaccagcgca ccggatgggt ctcgctgtgg
     1681 ttgccgaggg tgtggccgcg gcgcaggatt tcctgcacca gctccggccg cgccgcggcg
     1741 cgcgcaccga ccacgaagaa ggtggccttc gcgccatgcc ggtcgagcag gtcgagcatc
     1801 ggcagcgtct gctcggacgg gccgtcgtcg atcgtcagcc acaccttgcg ctcgccggtc
     1861 ggcaggcgcg tcagcaccgg gcagaacagc tgcgactgcg gcttgagcgt gccccaccag
     1921 aacggcaggt gggtggcgat cagcaccggc aggccgacct gccagccgaa ctgccaccac
     1981 acggccgccg ccagcagctg cgaacccagc aggaacggga cccaggcatg cgggtaacgg
     2041 ggaggtcgtt ccaacggggg ccaggtcgac atgggcgcat catgccacgg cgtaaactgc
     2101 gtgccctcac gcccggaaca cccccgtcat ggccctcgat cccgccctgc gcgcccgcat
     2161 cgacaccctg ctgcgccagc accgcgtcgt cctgttcatg aagggcacgc cggacgcgcc
     2221 gcaatgcggc ttctccgccc gcgcggtcgc cgcgctggcg ccgctgggcc tcgactacgc
     2281 gcacgtcgac gtgctcgccg accccgcgat ccgcgaaggc atcaagcagt tcggcgactg
     2341 gccgacgatc ccgcagctgt acatcgacgg cgacctggtc ggcggcagcg acatcgtcga
     2401 gcagatggcg aactccggcg acctgcacgc cgcgctcggc ctgccggcgc cggaccgcac
     2461 gccgccgacg atcgcggtga gcacggccgc gctcgcgatg ctgcgcgagg cgctcgccaa
     2521 cgccggcgac ggctacgcgt tgcaggtcgg catcgacgac cgctacaacg cgcgcctgca
     2581 gatggcgccg accgacccgc aggcgatcgc caccaccgtc gacggcctgc gcgtgcagtt
     2641 cgacctcgcc tcggcacggc gcgccgacgg cctgtcgatc gactgggtcg acgacgcgcg
     2701 cgggcgcggc ctggtcatcg acaaccccaa tgcgccgccg aaggtgcgcg agctctcccc
     2761 ggtggaggcg gccggcaaga tcgccgccgg cgcgctcacg ctggtcgacg tgcggcccgc
     2821 ggaggagcgc gcgttcgcgc aggtcaagac gcgtttcgag acgctggacg gcgatggtgt
     2881 cgcgcggctg gaggcgctgc cgaaggacac cccgctcgcg ttcctctgcc accacggcgg
     2941 gcgcagcgcg caggccgccg aacacttccg ccagcagggc ttccgcgagg tctacaacat
     3001 cgtcggcggt atcgacgcct gggcggacgc ggatccggcg atcggcaagt actgagctcc
     3061 cgcccgccgc ggggccacgc atgccgctca acgcgctcga cgccgtcctc gcagcgcccg
     3121 cgccgcggcc gctgcggcgc ctgctgccgg ccggcctgat cgagttcctc tacttcggcg
     3181 cgaaggaagc gacacgtcgg caagtggagc tcatggtcgc tgctggtggt gatgaccttc
     3241 accatcgtcg cccacctcaa gcacgtcaag gcgcgcatcc acgtgccgga atgaggcgcg
     3301 gttcgtgcgg ccggtcacag ccgtgaccaa cgtcagggtt ggcagcgcgc cggcgcgggt
     3361 ctagggttcg tggttcgctg aaccggggac tcctcatgct acgaccgacg ctcgtcgcgc
     3421 tcgccgcgac gctgctggcc gcgggcgcgc aggccgcgac caaaccgcac ttcaccgacg
     3481 acccttaccc gagtacctac cgcccgatcg ccgcgcaacc ggtgctgctg cagcacgcga
     3541 ccgtgctgac cggcaccggc gtgcgcctcg acgacgccga cgtgctgctc gccgacggca
     3601 aggtcgccgc ggtcggccag cacctgcagg cccccgccgg cgcgacggtg gtcgatgcga
     3661 ccggcaagtg ggtgaccccg ggcctgatcg acgtgcattc gcacctgggc gtgtatccga
     3721 gctcgggcgt gagtgcgctc agcaacggca acgaggcgac cgcgccggtc accgccaacg
     3781 tctgggccga gcattcgatc tggccgcagg accccggctt caacaccgcg cgcgccggcg
     3841 gcatcaccac cctgcagatc ctgccgggct cggccaacct gatcggcggc cgtggcgtga
     3901 ccctgaagaa cgtgccctcg atcacctacc agggcatgaa gttcccgggc gcgccgtggg
     3961 gcctgaagat ggcctgcggc gagaacccca agcgcgtgta cggcgagaag ggcggcccgt
     4021 cgaccgagat gggcaacgtc gccggctacc gcgcggcctt catcgatgcg gcggagtacc
     4081 tgaagaagaa cggcaagccc gacgaggacg cgccggcgaa gaagaagcac tggtggcagg
     4141 ccgatccgcc caaggccgac agcgacgccg acaccggcgg caagcgcgac ctcaagatgg
     4201 acacgctggc cggcgcgatc catggcgaca tcctcgtcca catccactgc taccgcgccg
     4261 acgagatggc gacgatgctg gacctcgcga aggagttcgg cttccgcgtg tccgccttcc
     4321 accacgcggt cgaggcctac aagctcgccg accggctcgc cgccgagaac gtgtgcgcgg
     4381 cgatgtgggc cgactggtgg ggcttcaaga tggaggcctt cgacggcatc caggagaacg
     4441 tcgccctggt cgaccgcgcg aagaacggct gcgcgatcgt gcattcggat tcggaggaag
     4501 gcatccagcg gctcaaccag gaggcggcca aggtgatcgc gcacgcgcag ctggccggca
     4561 tttccatcgc gccggagcgc gccatccagt ggatcaccag gaacccggcg aaggcgctcg
     4621 gcgtggtcga ccggaccggc acgctcgagc ccggcaagat ggccgacgcg gtggtgtgga
     4681 acggcacgcc cttcagcgtg tatgcgcacg ccgaacaggt ctacgtcgat ggcgcgcgcg
     4741 tgtacgaccg caacgatccg cgctaccagc ccaagtcgga cttcatgctg gggcagccgg
     4801 cggcggtcgc gggaggtgtg cgatgagccg cgccgtgtcc agcgccatcg cgcgcagtgc
     4861 gctcgccgtc gcgctggccg cgtgcagctt cgccgcggcc gcgcaggacc tgctgatccg
     4921 cgacgccacc gtgcacacgg cgaccgcgcg cggcaccctg cagcacgccg acgtcctggt
     4981 gcgcggcggc cgcatcgccg cggtcggcgc gcacctcgcg gccggcgatg cgcaggtggt
     5041 cgaggcgcac ggcgccccgc tgacgccgac gctgttcggc ggcatcaccg acatcggcct
     5101 ggaggaagtc tccggggaaa agacgaccgt cgacgcctcg gtcgcgctcg gcgaaggcaa
     5161 gcagatggcg gtgcggccgg agttcgacgt gaccctggcc tacaaccccg attcggtgct
     5221 gctgccggtg gcgcgcatcg agggcatcgg ctggaccgtg ctcggcgccg agccgaccca
     5281 gggcgggtcg ctgatcggcg gccagggcgg cgtggtgcgg ctggatggca gcgccgatcc
     5341 ggtggggccg cgggtgctgt tcgtcgacct cggcagcgcc gcggccaacc tcagcggcga
     5401 ctcgcgcgcc gcgcagtgga tgctgctcga ccagctgatc gacgaggtgc gcggccggat
     5461 ccggccggat tcgaggatgg cgctgctcac gcccgcaggg cgggcgacgc tggccaggta
     5521 cttcggcggc ggcgggcgcg tcatcgtgca ggccaaccgc gccgccgaca tccgccagct
     5581 gctgcgctgg gcgggcaagc gccacgtgaa ggtggcgatc gccggcggcg tcgaggcgtg
     5641 gcgggtcgcg tcgctgatcg ccgccgcgca cgtgccggtg ttcgtcgatc cgctcgccga
     5701 cctgccggcc gacttcgacc aggtcggcgc gacgatggag aacgcctcgc gactgcacgc
     5761 ggccggggtg gcggtgtcgt tcgcgcagtt cggcgacgcc tcgcacaacg cgcgcaagat
     5821 ccgccagctc gccggcaacg cggtcgccaa cgggctgcca tgggacgacg gcctggccgg
     5881 cctcacccgg gtgcccgcgg aagcgctcgg cgtggccggc gaactcggca cgatcgcgcc
     5941 gggccagcgc gcagacctcg tcctgtggag cggcgatccg ctgaaggtca gcacggtggc
     6001 gacgcaggtg tggctgggcg gcgacgcgat ccccctgcgt tcacgcctga ccgacctgcg
     6061 cgctcggtac ctgcatgccg acgatggcat gccgcgcgcc tatcccgagg gcgcccgcta
     6121 ggagaccggg atgaacgacg aggcgacgcc gatccgctgg tacttcgacg tcgtctcgcc
     6181 cttcgcctgg ctgcagtggc cgaaggtgca ggcgctggcg gtcgtgcacc gcgtcgaacc
     6241 ggtgccggtg ctgctggcgg cgatcctcgc cgcgcgcgga cagaaggggc cggcggagat
     6301 cccgggcaag cgtgagttca cctatcgcca cgtgctgtgg caggcgcgcc gcgacggcgt
     6361 gccgctgcag ttcccgcccg cgcacccgtt caacccggtc gccgccctgc ggacctgcat
     6421 cgccgccggc agcacgccgg aggcggtcga cgccgtgttc ggctggatct ggcgcgaagg
     6481 ccaggccggc gacgacgccg gcgcgctggc gccgttgctc gcccggctcg gcctcgcgcc
     6541 cgccgacatc gccaccgacg cggtccggca ggcgctgcgc gccaacaccg atgccgcgct
     6601 ggccgccggc gtgtacggcg taccgacgct gcaggtcggc gaacacctgt tctggggcaa
     6661 cgacgcgcac gagttcgcgc tcgccgcgct ggccgatccc gggctgctgc gcgatcccga
     6721 gatggaacgc ctcgccgcgc ttccggtcgg cgcgcagcgc cgctgatccg ccgccggtgc
     6781 gcggcccgcc gcgatgcggt agggtcaccg ccacgcgcgc gttaccgaca ggggaggatc
     6841 gcatgcgcat cggactcgtg gtcgactcgg cctgcgacct gccagccggc tatttcgccg
     6901 aacacggcat caccatcctg ccgatcaccg tgcggatcgg cgacgccatg ctcgccgacc
     6961 agcgcaacga gcaggccacg ctggaattcc tgcatgcgca gatcgccgag cgcggcgcgg
     7021 aggcggaaac catcccgtac tcggtgcagc agatccagga cctgttcctg cagaagctcg
     7081 tgatcgacta cgactacgtc ttctgcatga cgatcacgag gacgcgcagc ccgatcttcg
     7141 acaactgcat gcaggcgagc ttcgccatcc tcaacgagta caagccggtg cgcgcggcgg
     7201 ccggccacga cacgccgttc gcgctgcggg tgatcgacag ccagaacctg ttctccgccg
     7261 aaggcatcct gccggtggag gcggtgcggt tgcgcgacgc cggcgaaggc gcgccgaaga
     7321 tgcgcgcgcg gctcgagcac ctggccctcc acacccacgg ctacatggtg ccgcgcgacc
     7381 tctactacct gcgcgcgcgt gcgcgcaaga agggcgaccg
//
LOCUS       DATIQC010000098         2317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_572081, whole genome shotgun sequence.
ACCESSION   DATIQC010000098 DATIQC010000000
VERSION     DATIQC010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572081"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VLM17_02190"
     CDS             <1..358
                     /locus_tag="VLM17_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HSR64400.1"
                     /translation="QEFRARFPLGSTHRVVLVDGNGRYAGIVALATAYADGAHLQEGV
                     ERYARLRETVLSADLGIVAAMRAFDATQADELVVVDGERRPIGVLSEGFARRRYAEEL
                     EKKQMEMLGERFAGEE"
     gene            complement(368..2155)
                     /locus_tag="VLM17_02195"
     CDS             complement(368..2155)
                     /locus_tag="VLM17_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallopeptidase"
                     /protein_id="HSR64401.1"
                     /translation="MARLSRACLALALASVLGSAFAATPAPDGLATVAERSGFRETGR
                     YDEVIALCDAFQQRYPKAVRCFDFGTTPEGRPMKAMAVSTRGLLTPEAARAANQPVVL
                     VQGGIHAGEIDGKDAGFLVLRELLARDPGKLLDRQVLLFVPVFNVDGHERFGAWNRPN
                     QRGPEQMGWRVTAQNLNLNRDYVKADAPEMRAMLALVNAWDPLACVDLHVTDGAKFQH
                     DVSVEVEPATAGDAQLRTAGRALRDGVIARLDRQGSMALPFYPSFVEADDPASGFEDG
                     VAPPRFSNGYFQLRNRFGMLVETHSWKDYPTRVRITRNAILAVLDQVAGHGAQWLQAA
                     HAADERATRLGGSDVPLDWKATGKVRTIAFQGYAYTRSPSDVSGALMTHYDETRPQVW
                     HVPLRDELVPDHVATAPLGGYLVPAAEAAWVADKLRAHGVAFRRVDAPLPDLAVDAYR
                     AAAAQFAPQSFEGHQRLATTGAWGAERESFAAGALFVPIAQPKARLAMALLEPQAPDS
                     LLHWGGFNNFFEQKEYMEAYVAEDVARDMLAKDPALKAAFERKLHEDPEFAADPQARL
                     DFFYRRHPSWDQRFRRYPVVRVARSPMPE"
BASE COUNT          336 a          797 c          862 g          322 t
ORIGIN      
        1 gcaggagttc cgcgcacgct tcccgctggg ttcgacccat cgggtggtgc tggtcgacgg
       61 caatggccgc tacgccggga tcgtcgcgct cgccaccgcg tatgccgacg gcgcgcacct
      121 gcaggagggc gtcgagcgct acgcacgcct gcgcgagacc gtactgtcgg cggacctggg
      181 catcgtcgcc gcgatgcgcg cgttcgacgc gacgcaggcc gacgagctgg tcgtcgtcga
      241 tggcgagcgg cgcccgatcg gcgtgctcag cgaggggttc gcgcgccgcc gctacgccga
      301 ggagctggaa aagaagcaga tggagatgct cggcgaacgc ttcgccggcg aggagtgagc
      361 cgggcggtca ctccggcatc ggcgacctcg ccacccgcac gaccggatag cggcggaagc
      421 gctggtccca ggacggatgg cggcggtaga agaagtccag gcgcgcctgc ggatcggcgg
      481 cgaattcggg gtcctcgtgc agtttccgct cgaaggcggc cttcagcgcc ggatccttcg
      541 cgagcatgtc gcgcgccacg tcctcggcga cgtaggcctc catgtattcc ttctgctcga
      601 agaagttgtt gaacccgccc cagtgcagca gcgaatcggg cgcctgcggc tcgagcagcg
      661 ccatcgccag ccgcgccttc ggctgcgcga tcggcacgaa cagcgcgccg gcggcgaaac
      721 tctcgcgctc cgccccccac gcaccggtgg tcgccaggcg ctggtggccc tcgaaggact
      781 gcggcgcgaa ctgtgccgcg gcggcgcggt atgcatcgac ggcgaggtcc ggcaacgggg
      841 cgtcgacgcg ccggaaggcg acgccgtgcg cgcgcagctt gtccgccacc caggcggcct
      901 ctgctgccgg caccaggtag ccgcccagcg gcgcggtggc gacatggtcg ggcacgagct
      961 cgtcgcgcag cggcacgtgc cagacctgcg gccgggtttc gtcgtaatgc gtcatcagcg
     1021 cgccggagac atcggacggc gagcgggtat aggcgtaccc ctggaacgcg atcgtgcgca
     1081 ccttgccggt ggccttccag tcgagcggga cgtcgctgcc accgagccgc gtcgcgcgct
     1141 cgtcggccgc gtgcgccgct tgcagccact gcgcgccatg cccggcgacc tggtcgagca
     1201 cggcgaggat cgcgttgcgg gtgatgcgca cgcgggtcgg gtagtccttc cacgagtgcg
     1261 tctcgaccag catgccgaag cggttgcgca actggaaata gccattggag aaacgcggcg
     1321 gcgccacgcc gtcctcgaag ccggacgccg gatcgtcggc ttccacgaac gacggataga
     1381 acggcagcgc catcgagccc tgccggtcga gccgggcgat cacgccgtcg cgcagcgcgc
     1441 ggccggctgt gcgcagctgc gcgtcgccgg cagtggccgg ttccacctcc accgacacgt
     1501 cgtgctggaa cttggcgccg tcggtgacgt gcaggtcgac gcaggcgagg ggatcccacg
     1561 cgttcaccag cgctagcatc gcccgcattt ccggcgcatc ggccttgacg tagtcgcggt
     1621 tgaggttgag gttctgcgcg gtcacgcgcc agcccatctg ctccgggccg cgctggttcg
     1681 ggcggttcca ggcgccgaag cgctcgtgcc cgtcgacgtt gaacaccggc acgaacagca
     1741 gcacctggcg gtcgagcagc ttgcccgggt cgcgcgcgag caattcgcgc agcacgagga
     1801 agcccgcatc cttgccgtcg atctcgccgg cgtggatgcc gccctggacc agcaccacgg
     1861 gctggttggc ggcgcgtgcg gcttccggcg tgagcagccc gcgggtggat accgccatcg
     1921 ccttcatcgg ccggccttcg ggcgtggtgc cgaagtcgaa gcagcgcacc gccttcggat
     1981 agcgttgctg gaaggcgtcg cagagggcga tcacctcgtc gtagcggccg gtctcgcgga
     2041 agccgctgcg ttcggcgacg gtcgcgagcc cgtcgggcgc gggcgtggcg gcgaaggcac
     2101 tgccgaggac ggaggcgagc gcgagggcaa ggcaggcgcg ggagaggcgg gccatgtgcg
     2161 gatccggcaa cgggaagccc cgcatggtag cgaaggcgca cgaccgccac ggccggcggc
     2221 aggcttgcgg cgggcggcgc tcggctagac tgccgcgatt cccgcgagga gccacgatga
     2281 accgcctcta ctacgcgccg ggcgccgcca gcatggt
//
LOCUS       DATIQC010000099         3928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_289564, whole genome shotgun sequence.
ACCESSION   DATIQC010000099 DATIQC010000000
VERSION     DATIQC010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289564"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1632
                     /gene="gcvP"
                     /locus_tag="VLM17_02200"
     CDS             <1..1632
                     /gene="gcvP"
                     /locus_tag="VLM17_02200"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HSR64402.1"
                     /translation="VGISLDETSTRADVIALAGLFGAEIADIDALDAATADALPQALL
                     RRTEFLAHPVFNTHHSEHELLRYMRALADKDLAMDRTMIPLGSCTMKLNATAEMIPVT
                     WPEFANIHPLAPAEQARGYRELIDGLEAMLVECTGYDAVSLQPNSGAQGEYAGLLAIR
                     AYHRARGEGHRDVCLIPESAHGTNPASAQLCGMRVVVTKCDANGNVDVEDIRRNAEKY
                     SDKLAAIMITYPSTHGVFEEDVVSICEIVHQHGGQVYTDGANMNALVGVAKPGKWGSD
                     VSHLNLHKTFCIPHGGGGPGVGPCAVKSHLAPYLPRTFGGEGDVGMVSAASFGSASIL
                     PISWMYITMMGAEGLRRATQVALLNANYIAKKLAPHYETLYTGRNGLVAHECILDLRP
                     LKDATGISAEDVAKRLIDFGFHAPTLSFPVAGTLMVEPTESESQHELDRFIDAMIQIR
                     DEIRAVEDGRLDREDNPLKHAPHTATQVAASEWTHAYPRELAAFPLPNLKLQKYWPPV
                     ARVDNVYGDKNVFCSCVPINAFAGEIEAFSEPNVS"
     gene            1812..2270
                     /locus_tag="VLM17_02205"
     CDS             1812..2270
                     /locus_tag="VLM17_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HSR64403.1"
                     /translation="MDAISLLKDDHRKVKKLLGELAETTNRAEKTRPELLAQIALELE
                     VHTAIEEEIFYPAFKQAAGKSEDDKMVFEALEEHRAARDLVLPDLAKTPVASDQFGGR
                     AKVLKELVEHHADDEEEDMFPRARKLLDAATLAELGERMQARKQELLKSR"
     gene            2276..2833
                     /locus_tag="VLM17_02210"
     CDS             2276..2833
                     /locus_tag="VLM17_02210"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HSR64404.1"
                     /translation="MATSSPRRVALLVVDMINPLDFPGARALRRQAIPVAGAIARLKA
                     RLKPRGVPVVYVNDNFTQWLRDFHELVAICSAPKAPGAALLAPVVPEHDDYLVLKPRQ
                     SGFHAAPLEVLLRQLGVGHLVITGIAGDGCVMNTATDAHMREFAVTVPSDCCASITAA
                     RNQRALHVLRDAMGIDTRASRFVRG"
     gene            complement(2842..>3928)
                     /locus_tag="VLM17_02215"
     CDS             complement(2842..>3928)
                     /locus_tag="VLM17_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005416565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HSR64405.1"
                     /translation="LFDEAPRAPRTPRAPSGWLRMRGIRRNNLHGLDARIPLGVFTAV
                     TGVSGSGKSSLVSQALVDLVAAHLGHEPDVEETPSAELLPSAAQPTVGHLGGDVDRIR
                     RLVDVDQKPIGRTPRSNLATYTGLFDPVRRLFAATPQAKARRYDAGRFSFNLPKGRCG
                     TCEGEGFVSVELLFLPSVYAPCPACHGARYDPRTLEVRWRGRNIAEVLAMTVEEALAF
                     FADEPAVQRPLALLQAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDALYVLD
                     EPTTGLHPADVDRLMAQLHGLVDAGNTVVVVEHELRVVVDADWVIDVGPGAGEEGGRI
                     VVEGPPAVVAKARDSRTAPYLRRELAR"
BASE COUNT          624 a         1449 c         1331 g          524 t
ORIGIN      
        1 gtcggcatca gcctggacga aaccagcacg cgcgccgacg tgatcgcgct ggccggcctg
       61 ttcggcgcgg agatcgccga catcgacgcg ctcgatgccg cgacggccga cgcgctgccg
      121 caggccctgc tgcgccggac ggagttcctg gcgcatccgg tgttcaacac ccaccacagc
      181 gagcacgaac tgctgcgcta catgcgcgcg ctcgccgaca aggacctggc gatggatcgc
      241 accatgatcc cgctgggctc ctgcaccatg aagctcaacg ccaccgcgga aatgatcccg
      301 gtgacgtggc ccgagttcgc caacatccac ccgctggcgc cggccgagca ggcgcgcggc
      361 tacagggaac tgatcgacgg cctcgaggcg atgctggtgg agtgcaccgg ctacgacgcg
      421 gtcagcctgc agcccaactc cggcgcgcag ggcgagtacg ccggcctgct cgcgatccgc
      481 gcctaccacc gcgcgcgcgg cgaaggccac cgcgacgtct gcctgatccc ggagtccgcg
      541 cacggcacca atccggcgtc ggcgcagctg tgcggcatgc gcgtggtggt caccaagtgc
      601 gatgccaacg gcaacgtcga cgtcgaggac atccgccgca acgccgagaa gtacagcgac
      661 aagctcgccg cgatcatgat cacctacccg tcgacgcatg gcgtcttcga ggaggacgtg
      721 gtgtcgatct gcgagatcgt ccaccagcac ggcggccagg tgtacaccga cggcgccaac
      781 atgaacgcgc tggtcggcgt cgccaagccg ggcaagtggg gctcggacgt ctcccacctc
      841 aacctgcaca agaccttctg catcccgcac ggcggcggcg gcccgggtgt cggtccgtgc
      901 gcggtgaagt cgcacctcgc gccctacctg ccccgcacgt tcggcggcga aggcgacgtc
      961 ggcatggtca gcgcggcgag cttcggctcg gcgtcgatcc tgccgatcag ctggatgtac
     1021 atcacgatga tgggcgcgga gggcctgcgc cgcgcgaccc aggtggcgct gctcaacgcc
     1081 aactacatcg cgaagaagct ggcgccgcac tacgagacgc tctacaccgg ccgcaacggc
     1141 ctggtcgcgc acgagtgcat cctcgacctg cgcccgctca aggacgccac cggcatcagc
     1201 gccgaggacg tcgccaagcg cctgatcgac ttcggcttcc acgccccgac cctgagcttc
     1261 ccggtcgcag gcacgctgat ggtcgagccg accgagtccg aatcgcagca cgagctcgat
     1321 cgtttcatcg acgcgatgat ccagatccgc gacgagatcc gcgcggtcga ggacggccgc
     1381 ctggaccgcg aggacaatcc gctcaagcac gcgccgcaca ccgcgacgca ggtcgccgcc
     1441 agcgaatgga cccacgccta cccgcgcgag ctggccgcgt tcccgctgcc caacctgaag
     1501 ctgcagaaat actggccgcc ggtcgcgcgc gtggacaacg tgtacggcga caagaacgtg
     1561 ttctgcagct gcgtgccgat caacgccttc gccggcgaga tcgaggcctt cagcgagccg
     1621 aacgtgtcct gacccgcgcc cgggccttcc gcgaaaagcc ccgcttcggc ggggcttttc
     1681 gtttccggcc ggacgcgggt tgcgggcgcg atcgaaccgc gtgccgacgc gaatccgccc
     1741 gcgcccgcgc catcacgccg gcatgagccc cggcccgcaa cgctgggcgg ccccaccgga
     1801 ggcgcctgcc catggacgcg atcagcctgc tcaaggacga ccaccgcaag gtgaagaagc
     1861 tgctcggcga acttgccgag accaccaacc gcgcggaaaa gacgcgtccc gaactgctgg
     1921 cgcagatcgc gctggagctc gaggtgcaca cggcgatcga ggaggaaatc ttctacccgg
     1981 cgttcaagca ggcggccggg aagagcgagg acgacaagat ggtcttcgag gcgctggagg
     2041 aacaccgcgc cgcgcgcgac ctggtcctgc ccgacctggc gaagaccccg gtcgcctccg
     2101 accagttcgg cggccgcgcc aaggtgctca aggagctggt ggagcaccac gccgacgacg
     2161 aggaagagga catgttcccc cgcgcgcgga agctgctcga cgcggcgacg ctggccgagc
     2221 tcggcgaacg catgcaggcg cgcaagcagg agctcctcaa gtcgcgctga cgccgatggc
     2281 cacgtcgtcg ccacgccgtg tcgcgctgct cgtcgtcgac atgatcaacc cgctcgattt
     2341 ccccggcgcg cgggcgctgc ggcggcaggc catcccggtc gccggcgcca tcgcccggct
     2401 caaggcgcgg ctcaagccgc gcggcgtgcc ggtcgtctac gtcaacgaca acttcaccca
     2461 atggctgcgc gacttccacg agctggtcgc gatctgcagc gcgccgaagg cgccgggcgc
     2521 ggccctgctc gcacccgtcg tccccgaaca cgacgactac ctcgtgctca agccgaggca
     2581 atcgggcttc catgccgccc cgctggaggt cctgctgcgc cagctcggcg tcggccacct
     2641 ggtcatcacc ggcatcgccg gcgacggctg cgtcatgaac acggcgactg atgcgcacat
     2701 gcgcgaattc gccgtcaccg tgccgtcgga ctgctgcgcc tcgatcaccg cggcgcgcaa
     2761 ccagcgtgcc ctgcatgtgc tgcgcgacgc gatgggcatc gatacccgcg cttcgcggtt
     2821 cgtgcgcggc tgaagccgcc gctagcgcgc gagctcccgg cgcaggtagg gcgcggtgcg
     2881 gctgtcgcgc gccttcgcca ccactgccgg cggcccttcg acgacgatgc gaccgccctc
     2941 ctcgcccgcg ccgggcccga cgtcgatcac ccagtcggcg tcgacgacga cgcgcagctc
     3001 gtgctcgacc accaccaccg tgttgccggc gtcgaccagg ccgtgcagtt gcgccatcag
     3061 ccggtcgacg tccgccggat gcagcccggt ggtgggttcg tcgagcacgt agagcgcgtc
     3121 gccgcgctgc gcgcgctgca gctcggtggc cagcttgatg cgctgcgcct cgccaccgga
     3181 cagctccgtc gccggctggc cgaggcgcag gtagccgagg ccgatcgcct gcagcaacgc
     3241 gagcggccgc tgcacggccg gctcgtcggc gaagaacgcc agcgcctcct cgacggtcat
     3301 cgccagcact tcggcgatgt tgcggccgcg ccaccgcacc tccagggtcc tggggtcgta
     3361 gcgcgcgccg tggcaggccg ggcacggcgc gtacacgctc ggcaggaaca gcagctcgac
     3421 gctgacgaag ccctcgccct cgcacgtccc gcaacgcccc ttcggcaggt tgaacgagaa
     3481 ccggccggca tcgtagcggc gcgccttcgc ctgcggcgtc gccgcgaaca gccggcgcac
     3541 cggatcgaac aggccggtgt aggtggcgag gttggaacgc ggcgtgcgcc cgatcggctt
     3601 ctggtcgacg tcgaccaggc ggcggatgcg gtcgacgtcg ccgccgaggt ggccgaccgt
     3661 cggttgcgcg gcgctcggca ggagttcggc cgacggcgtt tcctccacgt ccggttcgtg
     3721 ccccaggtgc gccgcgacga ggtcgaccag cgcctggctg acaaggctcg acttgcccga
     3781 tcccgacacg ccggtgaccg cggtgaacac gccgagcggg atgcgggcgt ccaggccatg
     3841 caggttgttg cgccggatgc cgcgcatccg cagccagccc gatggcgcgc gcggcgtgcg
     3901 cggcgcgcgt ggcgcttcgt cgaacagg
//
LOCUS       DATIQC010000100         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_112777, whole genome shotgun sequence.
ACCESSION   DATIQC010000100 DATIQC010000000
VERSION     DATIQC010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112777"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            210..1655
                     /locus_tag="VLM17_02220"
     CDS             210..1655
                     /locus_tag="VLM17_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007806251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR64406.1"
                     /translation="MHRSLVATPLLALALASPLHAAPPPLSAEVRAFVQVDQPLVAIT
                     HVRVVDGTGAGARDDQTVVLQDGRIASVRTHGSVPQGATVIDGAGKTLIPGLVGMHDH
                     LFYPAPAVNPAAREPLYPEQGSSFPKLYLAGGVTTIRTTGSMEPYTDLALKRAIDAGT
                     LAGPKLHTTGPYLEGKGSFAPQLHELADAADARATVDYWIGEGASSFKAYMHITRVEL
                     AAAIAAAHAHGIKVTGHLCSIGFTEAVGLGIDNLEHGLVVDTEFLPGKAADVCPDTKQ
                     AGAELAKMDIGDPRLQQLIRLLVDKHVAITSTLPVFETFVPGRAPVDSRVLDAMLPEA
                     RAQYLKTREATAKKADSYWPRLYALEQAFEREFARRGGLLMTGLDPTGYGGVIAGYGD
                     QRGVELLVEAGFTPVEAIRIATLNGARFLGEDRQVGSIEAGKTADLVLLDGNPVRDIR
                     AIEHVALVFKDGVGYDPAKLAAAANGTVGLR"
     gene            complement(1705..>2239)
                     /locus_tag="VLM17_02225"
     CDS             complement(1705..>2239)
                     /locus_tag="VLM17_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR64407.1"
                     /translation="SFGIYMPKWAGTIYELLSAPVSPLEVVVGYVGAAATKSVLLGVL
                     ILATARVFVPYHVAHPAWMLCFLLLTAITFSLFGFIIGLWADDFQKLQVVPLMVVTPL
                     TFLGGAFYSIDMLPPVWRRITLFNPVVYLISGVRWSFYGISDVDVVLSAGMTLGFLVL
                     CLAVVWWIFRTGYKLKA"
BASE COUNT          375 a          788 c          778 g          298 t
ORIGIN      
        1 tggtggtgta gccgagcgcg tcgaggccgg ggcgcaggcc gggggcgagc ggaagcgctg
       61 aaaaagaagg cgtggtcatg ccgccatgat cgcagcatcg ccgggcgcgc gtggcgggcc
      121 gtcaccgcgg gtgcaagccg cgacgccggt cttccttgcc gtccgccggt ggcggctacc
      181 atgcgtccgt tccccatcgg acagcctgca tgcaccgctc cctcgtcgcc accccgctcc
      241 tggcgctcgc gctcgcttcg ccgttgcacg cggccccgcc gccactctcc gccgaggtcc
      301 gcgccttcgt gcaggtcgac cagccgttgg tcgcgatcac ccatgtgcgc gtggtcgacg
      361 ggaccggcgc cggggcgagg gacgaccaga ccgtggtgct gcaggatgga cgcatcgcct
      421 cggtgcgcac gcacggcagc gtgccgcagg gcgcaacggt gatcgatggg gccggcaaga
      481 ccctgatccc cggcttggtc ggcatgcatg accacctgtt ctacccggcg ccggcggtga
      541 acccggccgc cagggaaccg ttgtacccgg agcagggttc gagcttcccc aagctgtacc
      601 tcgccggcgg cgtcaccacc atccgcacca ccggcagcat ggagccctac accgacctcg
      661 cgctgaagcg cgccatcgac gccggcaccc tggccggacc gaagctgcac accacggggc
      721 cgtacctgga aggcaagggc agcttcgcgc cgcagctgca cgaactggcc gatgccgcgg
      781 acgcgcgcgc caccgtcgac tactggatcg gcgaaggcgc gagctcgttc aaggcctaca
      841 tgcacatcac ccgcgtggaa ctcgcggccg cgatcgccgc cgcgcacgcg cacggcatca
      901 aggtcaccgg ccacctgtgc tcgatcggct tcacggaagc ggttggcctg ggcatcgaca
      961 acctcgagca cgggctggta gtggacaccg agttcctgcc gggcaaggca gccgacgtgt
     1021 gcccggacac gaaacaggcc ggcgcggagc tggcgaagat ggacatcggc gacccgcgcc
     1081 tgcagcagct gatccggctg ctcgtcgaca agcacgtcgc gatcacctcg accctgccgg
     1141 tgttcgagac cttcgtgccc gggcgcgcgc cggtggattc gcgcgtcctg gacgcgatgc
     1201 tgccggaggc gcgcgcgcaa tacctgaaga cgcgcgaggc cacggcgaag aaggccgatt
     1261 cgtactggcc gcgtctctac gcgctggagc aggccttcga gcgcgaattc gccaggcgcg
     1321 gcgggctgct gatgaccggg ctcgatccca ccggctacgg cggcgtgatc gccggttacg
     1381 gcgaccagcg gggcgtggag ctgctggtgg aggcgggctt cacgccggtg gaggcgatcc
     1441 gcatcgccac gctcaacggt gcgcgcttcc tcggcgagga ccggcaggtc ggttcgatcg
     1501 aggccggcaa gaccgccgac ctcgtgctgc tcgacggcaa tccggtgcgg gacatccgtg
     1561 ccatcgagca cgtcgcgctg gtgttcaagg acggtgtcgg ctacgacccg gccaagcttg
     1621 ccgcggcggc caacggcacc gtcggcctgc gctgaggcgc cggcgcacgc cacgccgcgg
     1681 ctggctcccg gtactcccgc ggggtcacgc cttcagcttg taccccgtcc ggaagatcca
     1741 ccacaccacc gcgaggcaga ggaccaggaa tcccagggtc atgccggcgc tgagcacgac
     1801 gtcgacgtcg gagatcccgt agaagctcca gcgcacgccg ctgatcaggt acacgaccgg
     1861 gttgaacagg gtgatcctcc gccacaccgg cggcagcatg tcgatcgagt agaacgcgcc
     1921 gccgaggaag gtcagcgggg tgacgaccat cagcggcacg acctgcagct tctggaagtc
     1981 gtccgcccac aggccgatga tgaaaccgaa caggctgaag gtgatcgcgg tcagcagcag
     2041 gaagcagagc atccaggccg gatgggcgac gtggtagggc acgaacaccc gcgcggtcgc
     2101 caggatcaga acgcccagca gcaccgactt ggtggcggcc gcgccgacgt agccgaccac
     2161 cacctccagc ggcgacaccg gcgcggacag cagttcgtag atcgtaccgg cccacttggg
     2221 catgtagatg ccgaacgac
//
LOCUS       DATIQC010000101         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_77538, whole genome shotgun sequence.
ACCESSION   DATIQC010000101 DATIQC010000000
VERSION     DATIQC010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77538"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..420
                     /locus_tag="VLM17_02230"
     CDS             <1..420
                     /locus_tag="VLM17_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007081197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR64408.1"
                     /translation="DVVSLRTRDELGEVRHWIYSGRNDGQHQGYPVVDDAGSVRGVVT
                     RRTLLDPSEPNNRRIGDLAMRPPVVVHEHHSLREAADHMVAEDIGRLVVVGVDAPHPL
                     IGILTRGDILSAHGRRLKESHEAKRHIRLRKLLRRGA"
     gene            465..1592
                     /locus_tag="VLM17_02235"
     CDS             465..1592
                     /locus_tag="VLM17_02235"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HSR64409.1"
                     /translation="MDRRDFLAAGAAFAAGALFDPAAPAAPRAWPPFAGMLAIDGASG
                     TNLVYFDQGDPAIAGELAAARACGLAATLLTVGPQGRFWLDDAAFERTRANIAKWRAT
                     IDAHPDTLMLVQTGADLARAHRARKLGQIFGFQGTEPLGEDLERIPMFRKLGVRVIQL
                     THNRRNLVGDGSMEPGNAGLSRFGHEVVERLNAEKIVVDLAHGSQRTMREGILASKAP
                     PLISHTGCRALSDLPRCTSDEELRLLADRGGVAGMIFWPYLRRDTQPMAIDLVRHIEH
                     AIDVCGEDHVGLGSDTPVAPVERTPQFEKENRENIADMVEQGVFERGRPQDLYLFIPD
                     LNRADRYEVLAGMLARRGHSEARIAKVMGGNFARVMAEVWG"
     gene            complement(1623..>1997)
                     /locus_tag="VLM17_02240"
     CDS             complement(1623..>1997)
                     /locus_tag="VLM17_02240"
                     /inference="COORDINATES: protein motif:HMM:NF019883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HSR64410.1"
                     /translation="IIHLLHQPALALALQPPYRFAELRQPGVDLLAELISIVRARPDI
                     TTGALLEHFDGREEAGALQKLAVHVLPGESEQWQSVFLDAMDQLEKQTLQQRREELQT
                     RISTLTQAEKDELRALLQARLA"
BASE COUNT          311 a          717 c          680 g          289 t
ORIGIN      
        1 gacgtggtct cgctgcgcac ccgcgacgag ctcggcgagg tgcgccactg gatctactcc
       61 ggccgcaacg atggccagca ccagggctat ccggtggtcg acgacgccgg cagcgtgcgc
      121 ggcgtggtca cccggcgcac cctgctcgat ccgtccgaac ccaacaaccg ccgcatcggc
      181 gacctcgcca tgcgtccgcc ggtggtggtg cacgagcacc attcgctgcg cgaggccgcc
      241 gaccacatgg tcgccgagga catcggccgg ctggtggtgg tcggcgtcga cgcgccgcat
      301 ccgctgatcg gcatcctcac ccgcggcgac atcctgtccg cgcacggacg gcggctgaag
      361 gaaagccacg aggccaagcg ccacatccgc ctgcgcaagc tgctgcgccg gggcgcgtga
      421 aggccttggt gtaggctgcc gccacttcgc atcggagtgg ccgcatggat cgacgcgatt
      481 tcctcgccgc cggcgcggcg ttcgccgcgg gcgcgctgtt cgacccggca gcgccggcgg
      541 cgccgcgcgc atggccgcca ttcgcgggca tgctcgcgat cgacggcgcc tccggcacca
      601 acctcgtcta cttcgaccag ggcgacccgg ccatcgccgg agaactcgcc gccgcacgcg
      661 cctgcggcct cgccgcgacc ctgctgaccg tcgggccgca gggtcggttc tggctggacg
      721 acgcggcctt cgagcgcacc agggccaaca tcgccaaatg gcgcgccacc atcgatgcgc
      781 atcccgacac gctgatgctg gtccagaccg gcgccgacct cgcgcgcgcg caccgcgcgc
      841 gcaagctcgg ccagatcttc ggcttccagg gcaccgagcc gctcggcgag gacctcgagc
      901 gcatcccgat gttccgcaag ctcggcgtgc gcgtgatcca gctcacccac aaccgccgca
      961 acctggtcgg ggacgggtcg atggagccgg gcaatgccgg cctgagccgc ttcggccatg
     1021 aggtggtcga acgcctcaac gccgagaaga tcgtggtgga cctcgcgcac ggatcgcagc
     1081 gcacgatgcg cgagggcatc ctcgcctcga aggcgccccc gctgatcagc cacaccggtt
     1141 gccgcgcgct ctcggacctg ccgcgttgca cgtcggacga ggaactgcgc ctgctggccg
     1201 accgcggcgg cgtcgccggc atgatcttct ggccgtacct gcgccgcgac acgcagccga
     1261 tggcgatcga cctcgtccgc cacatcgagc acgcgatcga cgtatgcggc gaggaccacg
     1321 tcggcctcgg cagcgacacg ccggtggcgc cggtggagcg cacgccgcag ttcgaaaagg
     1381 agaaccgcga gaacatcgcc gacatggtcg agcagggcgt gttcgagcgc ggccggccgc
     1441 aggacctcta tctcttcatc ccggacctca accgcgccga ccgctacgag gtgctcgccg
     1501 gcatgctggc caggcgcggc cactccgagg cgcgcatcgc caaggtcatg ggtggcaact
     1561 tcgcgcgggt gatggccgaa gtgtggggct gaggcgtgct gcgcgccgag ggttgacccc
     1621 cgctacgcca gccgcgcctg gagcagcgcg cgcagctcgt ctttttcggc ttgagtcagg
     1681 gttgaaatgc gcgtctgcaa ctcttcccgt cgctgctgca gcgtctgttt ttcgagctga
     1741 tccatggcgt cgagaaaaac cgactgccat tgttccgatt cgccgggcag aacgtgcacg
     1801 gcaagcttct gcagggcgcc cgcctcttcg cgtccatcga agtgctccag cagggcgccg
     1861 gtggtgatgt cggggcgcgc gcgcacgatg gaaatcaact ccgccaacag atcgaccccc
     1921 ggctggcgca actcggcgaa ccgataaggc ggttgcaggg cgagcgcgag agccggttga
     1981 tggagcaaat ggatgat
//
LOCUS       DATIQC010000102         3952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_289641, whole genome shotgun sequence.
ACCESSION   DATIQC010000102 DATIQC010000000
VERSION     DATIQC010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289641"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..648
                     /locus_tag="VLM17_02245"
     CDS             <1..648
                     /locus_tag="VLM17_02245"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR64411.1"
                     /translation="AAAATLAAKRAAVADRTISAPFAGVLGLRQVSPGALVTPGTVIT
                     TLDDDSRIKLDFTLPESALSAIAPGQAVSARSDAWPGQAFDGRIAQVDSRVDPDTRAV
                     KARAELPNPDGRLRAGMLLRVQVQLPARQALVVPELAIQQEGEQASVFRVGGDGKADK
                     VPVKLGSRRQGEVEVVSGLEAGDRIVVEGTVKLHPGSRVVEAKAAGAGDAAPAAR"
     gene            673..3828
                     /locus_tag="VLM17_02250"
     CDS             673..3828
                     /locus_tag="VLM17_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010370936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR64412.1"
                     /translation="MKLSDISIHRPVFATVVSLLLIVLGVIAFTRLPLRELPDIDPPV
                     VSISTTYTGASAAVMETRVTKVLEDAVSGIEGVDTIQSSSQNGVSNINIEFTLKRDIE
                     SAANDVRDAVSRSLDQLPDDADAPQIRKVSSDSDVILWLNLSGPGMSGTGNSTLALTD
                     YAKRYLVDRLSTVDGVAQVQLGGAQEYAMRVWIDRNALAARGLTIGDIEDALRARNVD
                     IPAGRLESSTRDFTLQLDRSFAGATDFEQLPIGHGADGHVVRLGEVAKVSLGSLERRA
                     YYRTDGHPQVGLGIVKTSTANDLAVVAAAKKEAEAINRTLPDGMKIAVTYDATVFIDV
                     AVREVYKTLAEAIVLVLVVIWLFLGSARSALVPAVTVPVCVMAAFVPLLAFGFSINLL
                     TLLALVLSIGLVVDDAIVVLENIQRRADLGEPPPLAALRGTRQVGFAVLATTAVLVAV
                     FLPIAFLQGNNGRLFRELAVALAGAVGISCFVALSLTPMMGSLLVHPHTEPRGISAWM
                     ERRMRALSSGYRRTLDRFIARPLLFLAAMGVALALAGLLFTRVPRELAPSEDRGAFSV
                     SVTAPEGAGFDYTAAQMGKVEQVLMRYVGNDGADGGKPGMRVLGRVPGSYGASENMNS
                     GRGILILKPWDQRAASTDDVVKQVRSDLERIPGVRAVPQVRQGLVRSFGQPLQVVLEG
                     PEYAQLVQWRDRLLARMDDNPGLYGADADYKETRPQLHVIVDQAKAADLGVTEQAIGQ
                     TLQAMLGSARVTTFVRGGQEYYVVLQAAEGERATPTDLDNLYVRSRTGALVPLASVVR
                     LDERAEAGNLNRFNRLRAITLSAGLSPGYTLGEAIDWVNRTAREELPPTVQVDYAGQS
                     REYLQQGSAVLFTFGMALLIVFLVLAAQFESFLHPLVIMLTVPLAVLGALLGLWLFGK
                     SLNLFSQIGIVMLVGLAAKNGILIVEFANQRRDAGLPVREAILEAAATRMRPILMTSI
                     ATIAGAMPLMLATGAGAGSRTSIGVVVVFGVALSTLLSLFVVPAFYLLLAPYTRSPDE
                     RTHALDRLEQEIAPVEDAAHG"
BASE COUNT          559 a         1410 c         1426 g          557 t
ORIGIN      
        1 gccgccgcgg ccacgctggc cgccaagcgc gcggcggtcg ccgaccgcac catcagcgcg
       61 cccttcgccg gcgtgctcgg cctgcgccag gtcagtccgg gcgcgctggt cacgcccggc
      121 accgtgatca ccacgctcga cgacgacagc cgcatcaagc tcgacttcac cctgcccgag
      181 tccgcgttgt cggcgatcgc gccgggacag gcggtgagcg cgcgcagcga cgcctggccc
      241 gggcaggcgt tcgacggccg catcgcgcag gtcgacagcc gcgtcgatcc ggacacccgc
      301 gcggtcaagg cgcgcgccga actgcccaac cccgatggcc ggctgcgcgc cggcatgctg
      361 ctgcgcgtgc aggtgcagct gccggcgcgg caggcgctgg tggtgccgga actcgcgatc
      421 cagcaggaag gcgagcaggc ctcggtgttc cgcgtcggcg gcgacggcaa ggcggacaag
      481 gtgccggtga agctcggcag ccggcggcag ggcgaggtcg aagtggtgtc cggcctggag
      541 gcgggcgacc gcatcgtcgt ggaaggcacg gtgaagctgc atcccggcag ccgggtggtg
      601 gaagcgaagg cggcgggtgc gggcgacgcg gccccggcgg cgcgctaggc cggcggcagc
      661 agggcggatc gcatgaaact ctccgacatc tccatccacc gcccggtgtt cgccaccgtg
      721 gtcagcctgc tgctgatcgt gctgggcgtg atcgcgttca cccgcctgcc gctgcgcgag
      781 ctgccggaca tcgatccgcc ggtggtgtcg atcagcacca cctacaccgg cgccagcgcc
      841 gcggtgatgg aaacgcgcgt gaccaaggtg cttgaggacg cggtgtccgg catcgagggg
      901 gtcgacacca tccagtcgag cagccagaac ggcgtctcca acatcaacat cgagttcacc
      961 ctcaagcgcg acatcgagag cgccgcgaac gacgtgcgcg acgcggtcag ccgcagcctc
     1021 gaccagctgc cggacgacgc cgacgccccg cagatccgca aggtctccag cgattccgac
     1081 gtcatcctct ggctcaacct cagcggcccc ggcatgagcg ggaccggtaa cagcacgctg
     1141 gcgctgaccg actacgccaa gcgctacctg gtcgaccgcc tgtccaccgt cgacggcgtg
     1201 gcccaggtcc agctcggcgg cgcgcaggaa tacgcgatgc gggtctggat cgaccgcaac
     1261 gcgctggccg cgcgcggcct gaccatcggc gacatcgagg acgcgctgcg cgcgcgcaac
     1321 gtcgacatcc cggccggccg gctggagtcg agcacgcgcg acttcaccct gcagctggac
     1381 cgcagcttcg ccggcgccac cgacttcgag cagctgccga tcggccacgg cgcggacggc
     1441 cacgtggtgc gcctgggcga agtggcgaag gtgtcgctgg gttcgctgga gcggcgcgcc
     1501 tactaccgca ccgacggcca tccgcaggtg ggcctgggca tcgtcaagac ctcgacggcg
     1561 aacgacctcg cggtggtcgc ggcggcgaag aaggaagcgg aggcgatcaa caggacgttg
     1621 cccgacggca tgaagatcgc ggtcacctac gacgccaccg tgttcatcga cgtcgccgtg
     1681 cgcgaggtct acaagaccct ggccgaggcc atcgtgctgg tgctggtggt gatctggctg
     1741 ttcctcggca gcgcgcgctc ggcgctggtg ccggccgtga cggtgccggt gtgcgtcatg
     1801 gcggccttcg tgccgctgct tgcgttcggg ttctcgatca acctgctcac gctgctggcg
     1861 ctggtgctgt cgatcggtct cgtcgtcgac gacgccattg tggtgctgga gaacatccag
     1921 cgtcgcgccg acctcggcga gccgccgccg ctcgccgccc tgcgcggcac ccgccaggtc
     1981 ggattcgcgg tgctggccac caccgcggtg ctggtcgcgg tgttcctgcc gatcgcgttc
     2041 ctgcagggca acaacggccg gctcttccgc gaactcgcgg tcgcgctggc cggcgcggtc
     2101 gggatttcct gcttcgtcgc gctcagcctg acgccgatga tgggctcgct gctggtgcac
     2161 ccgcacaccg agccgcgcgg catcagcgcc tggatggagc ggcgcatgcg cgcgctgtcg
     2221 tccggctacc ggcgcaccct ggaccgcttc atcgcccgcc cgctgctgtt cctcgccgcc
     2281 atgggcgtcg cgctggcgct cgccggcctg ctgttcaccc gcgtgccgcg cgaactcgcc
     2341 ccgagcgagg accgtggtgc gttttcggtc agcgtcaccg cgccggaggg cgccggcttc
     2401 gactacaccg ccgcgcagat gggcaaggtc gaacaggtcc tgatgcgcta cgtcggcaac
     2461 gacggcgcgg acggcggcaa gccgggcatg cgcgtgctcg gccgcgtgcc cggcagctac
     2521 ggcgccagcg agaacatgaa cagtggtcgc ggcatcctga tcctcaagcc ctgggaccag
     2581 cgcgcggcca gcaccgacga cgtcgtcaag caggtgcgca gcgacctcga gcgcatcccc
     2641 ggcgtgcgcg cggtcccgca ggtgcgccag ggactggtgc gcagcttcgg ccagccgctg
     2701 caggtggtgc tggaagggcc cgagtacgcg cagctggtgc agtggcgcga ccgcctgctc
     2761 gcgcgcatgg acgacaaccc cggcctgtac ggcgccgacg ccgactacaa ggagacgcga
     2821 ccgcagctgc acgtcatcgt cgaccaggcc aaggccgccg acctgggcgt gaccgagcag
     2881 gcgatcggcc agacgttgca ggcgatgctc ggctcggcgc gggtcacgac gttcgtgcgt
     2941 ggcggccagg agtactacgt ggtgctgcag gcggccgaag gcgagcgcgc cacccccacc
     3001 gacctcgaca acctctacgt gcgcagccgc acgggcgcgc tggtgccgct ggcgagcgtg
     3061 gtccggctgg acgagcgcgc ggaagccggc aacctgaacc gcttcaaccg cctgcgcgcg
     3121 atcacgctct ccgcggggct gtcgccgggg tacacgctgg gcgaggcgat cgactgggtg
     3181 aacaggaccg cgcgcgagga actgccgccc acggtgcagg tcgactacgc ggggcagtcg
     3241 cgcgaatacc tgcagcaggg cagcgccgtg ctgttcacct tcggcatggc gctgctgatc
     3301 gtgttcctgg tgctggccgc gcagttcgaa agcttcctgc atccgctcgt gatcatgctc
     3361 acggtgccgc tggcggtgct gggcgcgctg ctcgggctgt ggctgttcgg caagtcgctc
     3421 aacctgttca gccagatcgg catcgtgatg ctggtgggcc tcgcggccaa gaacggcatc
     3481 ctgatcgtcg aattcgccaa ccagcggcgc gacgccgggt tgccggtgcg cgaggccatc
     3541 ctcgaggcgg cggccacgcg catgcgcccg atcctgatga cctcgatcgc gacgatcgcc
     3601 ggcgccatgc cgctgatgct ggcgaccggc gccggtgccg gcagccgcac ctcgatcggc
     3661 gtggtggtgg tgttcggcgt cgccctgtcg acgctgctgt cgctgttcgt agtgccggcg
     3721 ttctacctgc tgctggcgcc atacacgcgc tccccggacg agcgcacgca cgcgctcgac
     3781 cggctggagc aggagatcgc gccggtcgag gacgccgcgc acgggtagac tgcgcgcatg
     3841 cgcggaccgg acaacccgtg ggacaggcgg acgccgcgcg cgcgtcccgc cgatgcgcgc
     3901 ccgcaaccgg cgccggcgca tgcgcgtgac cgcccgcgcg cgccggccgc gg
//
LOCUS       DATIQC010000103         1526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_112809, whole genome shotgun sequence.
ACCESSION   DATIQC010000103 DATIQC010000000
VERSION     DATIQC010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112809"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..>1526)
                     /locus_tag="VLM17_02255"
     CDS             complement(15..>1526)
                     /locus_tag="VLM17_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HSR64413.1"
                     /translation="AGLRAVIWGSIVSAVFAVVVATRVFASDVASYFRVNDRGGVTGF
                     DFALSMALLAVGHLVGLWVGIAMLLGAVIGWGWGVPHFSTLAGTLAGEPATLAQATWS
                     HQVRFLGAGTIGVAAIWTLLKLVKPVASGLASAMAASRVRKAGQGGTLPRVEQDIPIG
                     LVAIITVASFVPIAWLFGHFSIASGLGDHMALLVAGGLVYCVVMSFFVSAVCGYMAGL
                     IGSSNSPLSGIGILVVIGAALLLVFGIKPMLATANDNGLVAFSLFVTSVVFTVAAIAN
                     NNLQDLKTGQLVDATPAKQQWALVVGVLAGAAVIPPVLDLLNHAYGFAGAPGADPAKA
                     LAAPQAGLISALAQGVIQHNIDWSLIEIGAGIGVALIVLDALLRRATADKAHLSPLAV
                     GLGIYLPTSATLMVVVGALAGAVYDRRAERSARPESAKQLGVLLASGMIVGEGLVGVL
                     IAAIVAFSGKDAPLALVGPGFANAAVWVGGVAFVAVMFAMYRWIERTGRGTFG"
BASE COUNT          260 a          574 c          522 g          170 t
ORIGIN      
        1 ggtcacgcgc ggcgtcagcc gaaggtgccc cggcccgtcc gctcgatcca gcggtacatc
       61 gcgaacatca ccgcgacgaa cgcgacgcca ccgacccaga ccgccgcgtt ggcgaagccg
      121 gggccgacca gcgccagcgg cgcgtccttg cccgagaacg cgacgatcgc cgcgatcagc
      181 acgccgacca ggccttcgcc cacgatcatg ccggaggcga gcagcacgcc gagctgcttc
      241 gccgactccg ggcgcgcgct gcgttcggcg cgcctgtcgt acaccgcgcc ggccagcgca
      301 ccgaccacca ccatcagggt cgccgaggtc ggcaggtaga tgccgaggcc gaccgccagt
      361 ggcgacaggt gggccttgtc ggcggtcgcc ctgcgcagca gcgcgtcgag cacgatcagc
      421 gccacgccga tgccggcgcc gatctcgatc aggctccagt cgatgttgtg ctggatcacg
      481 ccctgcgcca gcgccgagat cagccccgcc tgcggcgccg cgagcgcctt ggccgggtcc
      541 gcgccgggcg cgccggcgaa accgtacgcg tggttgagca ggtcgagcac cggcgggatc
      601 accgccgcgc cggcgagcac gccgaccacc agcgcccact gctgcttggc gggcgtcgca
      661 tcgaccagct gcccggtctt gaggtcctgc aggttgttgt tggcgatcgc cgcgacggtg
      721 aacaccaccg aggtgacgaa cagcgagaac gcgaccagcc cgttgtcgtt ggcggtggcg
      781 agcatcggct tgatgccgaa caccagcagc agcgcggcgc cgatcaccac caggatgccg
      841 atgcccgaca gcgggctgtt cgacgaaccg atcaggccgg ccatgtagcc gcacacggcg
      901 gacacgaaga agctcatcac cacgcagtag acgaggccgc cggcgaccag cagcgccatg
      961 tggtcgccga ggccgctggc gatgctgaag tggccgaaca gccaggcgat cggcacgaag
     1021 ctggcgacgg tgatgatcgc gaccagcccg atcgggatgt cctgctccac gcgcggcagc
     1081 gtgccgccct gccccgcctt gcgcacgcgc gaggccgcca tcgccgaggc gaggccgctc
     1141 gccaccggct tgaccagctt gagcagcgtc cagatcgcgg ccacgccgat cgtgccggcg
     1201 cccaggaagc gcacctggtg gctccaggtc gcctgcgcga gcgtggccgg ctcgcctgcc
     1261 agcgtgccgg cgagggtcga gaagtgcggc acgccccagc cccagccgat caccgcgccg
     1321 agcagcatcg cgatgccgac ccacaggccg accaggtggc cgaccgcgag cagcgccatc
     1381 gacagcgcga aatcgaaacc ggtcacgccg ccgcggtcgt tgacccggaa atagctggcg
     1441 acgtcgctgg cgaaaacccg ggtcgccacg accaccgcga acaccgcgga cacgatcgaa
     1501 ccccagatca ccgcgcgcag gccggc
//
LOCUS       DATIQC010000104         1593 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_501240, whole genome shotgun sequence.
ACCESSION   DATIQC010000104 DATIQC010000000
VERSION     DATIQC010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501240"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..800
                     /locus_tag="VLM17_02260"
     CDS             198..800
                     /locus_tag="VLM17_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HSR64414.1"
                     /translation="MPQPMLFADEPRVLVEDAEGGIHYRPGFVDRATADAWFAALRDG
                     IAWQSERRPMYDRVVEVPRLLAGFALDDPRLPPVLADAAARVLGALRAPFTHVGLNQY
                     RDGRDSVAMHNDKLYSIVPGWPIALLSLGGARRMDIRAKPGEGEGRRATLRIELEPGS
                     LLVMSHRSQLHYDHGIPKTREPVGPRISLAFRVRPGAGKW"
     gene            860..>1593
                     /locus_tag="VLM17_02265"
     CDS             860..>1593
                     /locus_tag="VLM17_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007805882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylargininase"
                     /protein_id="HSR64415.1"
                     /translation="MRIAITRRISPTLADCQLSFVPRVPLDVERAEAQHRDYCRALAA
                     AGCSVVELAPEPDMPDAVFVEDTAVVVEELAVVTRPGAPSRRGEGATVRPVLARFRPL
                     AEIEAPGTLDGGDVLRIGRRVFVGESARSNADGIARLRALLQPHGYTVQGVTTRDCLH
                     LKSAVTALGGGTLLVQPEWVDPAVFADYRVVPVDPGEEHAANALRIGEGTVVYPDCFP
                     RTQARIEAAGVRVLAVDVSELQKAEGA"
BASE COUNT          211 a          564 c          603 g          215 t
ORIGIN      
        1 tcgcccagcg ctggagccgc tacgccaagg ccggcgtgct cgacggcgtg gccttcgagg
       61 ccgggggctg gaagggcatc cagtgcgtgc gcacgccgca gggctggcgg atcgcatcgg
      121 tggtctggga cgacatcgcg tgatcgcgcc gcgctgccgt cacgaccggt gagaccggcg
      181 ggcgcgagac tgcggccgtg ccgcaaccca tgctcttcgc cgacgaaccg cgcgtgctgg
      241 tcgaggacgc cgaaggtggc atccactacc gccccggctt cgtcgatcgc gccaccgccg
      301 acgcctggtt cgccgccctg cgcgacggca tcgcgtggca aagcgaacgg cggccgatgt
      361 acgaccgcgt ggtcgaggta ccgcgcctgc tcgccggctt cgcgctcgac gatccgcgcc
      421 tcccgccggt gctggccgat gcggccgcgc gcgtgctcgg agcactgcgc gcgccgttca
      481 cccatgtcgg cctgaaccag taccgcgacg gccgcgacag cgtggccatg cacaacgaca
      541 agctgtacag catcgtgccc ggatggccga tcgcgctgct gtcgctgggc ggagcgcggc
      601 gcatggacat ccgcgccaag cccggcgaag gcgagggcag gcgggcgacg ctgcggatcg
      661 agctcgaacc aggcagcctg ctggtgatga gccaccgctc gcagctgcat tacgaccacg
      721 gcatcccgaa gacgcgcgag ccggtcggac cgcggatcag cctggcgttc cgtgtccgtc
      781 ccggggcggg gaagtggtga gcggccagcg gcgcgacact ccatttggcc gcgcgccagg
      841 cgcgcgctag gctgccgcga tgcgcatcgc catcacccgc cggatcagtc ccaccctggc
      901 cgattgccag ctctccttcg tgccgcgcgt cccgctcgac gtggagcgcg ccgaggcaca
      961 gcatcgcgac tactgccgtg cgctcgccgc ggccggctgc agcgtcgtcg agctggcgcc
     1021 ggagccggac atgcccgacg ccgtgttcgt cgaggacacc gcggtggtgg tggaggaact
     1081 ggcggtggtg acccgtcccg gcgcgccgtc gcggcgcggc gagggggcga cggtcaggcc
     1141 ggtgctggcg cgcttccgcc cgctcgcgga gatcgaggcg cccggcacgc tcgacggcgg
     1201 cgatgtgctg cggatcgggc ggcgcgtctt cgtcggcgag tccgcgcgca gcaacgccga
     1261 cggcatcgcc cggctgcgcg cgctgctgca gccgcacggc tataccgtgc agggcgtaac
     1321 gactcgcgac tgccttcacc tcaagtcggc ggtgaccgcg ctgggcggcg gcacgctgct
     1381 ggtgcagccg gaatgggtcg atccggcggt gttcgcggac taccgcgtcg tcccggtcga
     1441 tccgggggag gaacatgcgg ccaacgcgtt gcggatcggc gagggcacgg tcgtctaccc
     1501 ggactgcttc ccgcgcacgc aggcgcggat cgaggcggcc ggcgtgcggg tgctggcggt
     1561 ggacgtatcg gaactgcaga aggccgaggg cgc
//
LOCUS       DATIQC010000105         2979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_360193, whole genome shotgun sequence.
ACCESSION   DATIQC010000105 DATIQC010000000
VERSION     DATIQC010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360193"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VLM17_02270"
     CDS             complement(<1..380)
                     /locus_tag="VLM17_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011052063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSR64416.1"
                     /translation="MGRGPSIEARKNAVDAQRGKIFTKVIREIGVAARAGGGDPAGNP
                     RLRAAIDRGLQVNMSKDVIERAIKKATGELEGVTYEEIRYEGYAPGGVAVIVDCLTDN
                     KVRTVADVRHAFSKFGGNLGTEGSV"
     gene            complement(417..1073)
                     /locus_tag="VLM17_02275"
     CDS             complement(417..1073)
                     /locus_tag="VLM17_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012511900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR64417.1"
                     /translation="MSPPDGHRRVVLLHGLWMPGAVMHWLALRLQDAGFATETYSYHG
                     IADGPELAAPGLVEFIGDADADIVAHSLGGLVALQALCDAPALPVRRVVCLGSPLAGS
                     GAVSGILRWPPAASLFGRSAELLQHGFPCWEGRAEVGVIAGCVPHGLGALFGHFHGPH
                     DGTVAVEETRLRGLADHVVIDASHSGLLLSEEAAAQTIAFLREGRFRPAAAAAAGAIG
                     "
     gene            complement(1070..1591)
                     /locus_tag="VLM17_02280"
     CDS             complement(1070..1591)
                     /locus_tag="VLM17_02280"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009581341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64418.1"
                     /translation="MSLAIRRATPADADALSAVGARTFVDTFGHLYSREDLQAFLEES
                     HAPAAYARLLADPAYALWVLEDERGARGYALAGPARLPHPELRAEDGELKRLYVDTDL
                     HNVGWGGKLFAEALAWLERAGPRTLWISVWSENLGAQRFYARQGFGFAGEYEFPVGAQ
                     RDREFMFRRLPSA"
     gene            complement(1588..>2979)
                     /gene="aspS"
                     /locus_tag="VLM17_02285"
     CDS             complement(1588..>2979)
                     /gene="aspS"
                     /locus_tag="VLM17_02285"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HSR64419.1"
                     /translation="TRTKLVQALRRHLDGAGFQDIETPILTKATPEGARDFLVPARMH
                     PGEFYALPQSPQLFKQILMVAGFDRYYQIARCFRDEALRADRQLEFTQLDMEFAWVSE
                     RDVQDTVEEMIRVVFAEVIGVELDAPFPRMTYAEAMRRYGSDKPDLRIAMEFADIADL
                     VKDCGFKVFTDIANTADGRVVALRVPGGATLSRKQIDDYAAYAGKFGAKGLAWMKVED
                     AAKGRDGISSPIAKFLDDGTLAGILNAAGASSGDAIFFGAAGYKTASDFMGALRLKLG
                     RDLGLVEDGWKPLWVTDFPMFEWDDEERRYVALHHPFTAPAVDSIEDLRANAGTAVSR
                     GYDMVLNGNEIGGGSIRIHRPQMQSAVFELLGIGAEEAEGKFGFLLDALRYGAPPHGG
                     IAFGIDRIAALMAGTESIRDVIAFPKTTTAQCLMTGAPSPVPDNQLAEVHVSVRPKDE
                     KGAHERPVVAKQG"
BASE COUNT          423 a         1077 c         1046 g          433 t
ORIGIN      
        1 accgagccct cggtgccgag gttgccgccg aacttggaga acgcgtggcg cacgtcggcg
       61 acggtgcgga ccttgttgtc ggtcaggcag tcgacgatca ccgcgacgcc gccgggcgca
      121 tagccctcgt agcggatctc ctcgtaggtc acgccttcga gttcgccggt cgccttcttg
      181 atcgcgcgct cgatcacgtc cttggacatg ttcacctgca ggccgcggtc gatcgcggcg
      241 cgcaggcgcg ggttgccggc gggatcgccg ccgcccgcgc gcgcggccac ccctatctcg
      301 cggatgacct tggtgaagat cttgccgcgc tgcgcgtcga ccgcgttctt gcgcgcttcg
      361 atggaagggc cacgacccat gtccggtccg gatgctgcgg aggaagggcg cggattttac
      421 ccgatcgccc cggccgcggc cgccgccgcg ggccggaaac gcccctcgcg caggaaggcg
      481 atcgtctgcg ccgccgcttc ctcggacagc agcaggccgc tgtggcttgc gtcgatcacg
      541 acgtggtcgg ccaggccccg caggcgggtt tcctcgaccg ccacggtgcc gtcgtgcggg
      601 ccgtggaaat ggccgaacag cgcgcccagc ccatggggca cgcagccggc gatcaccccg
      661 acctcggccc ggccttccca gcacgggaag ccgtgctgca gcagctcggc gctgcggccg
      721 aacaggctcg ccgccggcgg ccagcgcagg atgccgctga ccgcgccgct gccggcgagc
      781 ggcgagccca ggcagaccac gcgtcgcacc ggcagcgccg gcgcatcgca caacgcctgc
      841 agcgcgacga gcccgccgag gctgtgggcg acgatgtccg cgtccgcatc gccgatgaat
      901 tcgaccaggc cgggcgcggc cagctccggg ccgtccgcga tgccgtggta ggagtaggtt
      961 tcggtggcga agccggcatc ctgcaggcgc agggccagcc agtgcatcac cgcccccggc
     1021 atccacaggc catgcagcag gacgacgcgc cgatggccgt ccggtgggct catgcggacg
     1081 gcaggcgccg gaacatgaat tcgcggtcgc gctgcgcgcc gaccgggaac tcgtactcgc
     1141 cggcgaagcc gaagccctgg cgggcgtaga agcgctgcgc gccgaggttc tccgaccaca
     1201 cgctgatcca cagcgtgcgc gggccggcgc gttccagcca ggcgagcgcc tcggcgaaga
     1261 gcttgccgcc ccagccgacg ttgtgcaggt ccgtgtccac gtacaggcgc ttgagctcgc
     1321 cgtcctccgc gcgcagctcc ggatgcggca gccgcgccgg ccccgccagc gcgtaaccgc
     1381 gcgcgccgcg ctcgtcctcc agcacccaca gcgcataggc cggatcggcg agcaggcgcg
     1441 cgtaggcggc cggggcatgg ctttcctcga ggaaggcctg caggtcttcc cgcgaataca
     1501 ggtggccgaa ggtgtcgacg aaggtgcgcg cgcccaccgc cgacagcgcg tcggcgtccg
     1561 cgggcgtggc gcggcggatc gccaggctca tccctgcttc gccaccaccg gccgctcgtg
     1621 cgcgcccttc tcgtccttcg ggcgcaccga cacgtgcact tcggccagct ggttgtccgg
     1681 caccggcgac ggcgcgccgg tcatcaggca ctgcgcggtg gtggtcttgg ggaaggcgat
     1741 cacgtcgcgg atcgactcgg tgcccgccat cagcgcggcg atgcggtcga tgccgaaggc
     1801 gatgccgccg tgcggcggcg cgccgtagcg gagcgcgtcg agcaggaagc cgaacttgcc
     1861 ctccgcctcc tccgcgccga tgccgagcag ctcgaacacc gcgctctgca tctgcgggcg
     1921 gtggatgcgg atcgaaccgc cgccgatctc gttgccgttg agcaccatgt cgtagccgcg
     1981 cgacaccgcg gtgcccgcgt tcgcgcgcag gtcctcgatg ctgtccaccg ccggcgcggt
     2041 gaacgggtgg tgcaacgcca cgtagcgccg ctcctcgtcg tcccattcga acatcgggaa
     2101 gtcggtcacc cacagcggct tccagccgtc ctcgaccagg ccgaggtccc tgccgagctt
     2161 cagccgcagg gcgcccatga agtcggaggc cgtcttgtag ccggccgccc cgaagaagat
     2221 cgcgtcgccg ctcgacgcgc cggcggcatt gaggatgccg gcgagcgtgc cgtcgtcgag
     2281 gaacttggcg atcggcgaac tgatgccgtc gcggcccttg gccgcgtcct cgaccttcat
     2341 ccacgccagg cccttcgcgc cgaacttgcc ggcgtaggcc gcgtagtcgt cgatctgctt
     2401 gcgcgacagg gtcgcgccgc ccggcacccg cagcgcgacc acgcgcccgt cggcggtatt
     2461 ggcgatgtcg gtgaagacct tgaacccgca gtccttcacc aggtcggcga tgtcggcgaa
     2521 ttccatcgcg atgcgcaggt cgggcttgtc cgaaccgtag cggcgcatgg cttcggcata
     2581 ggtcatgcgc gggaacggcg catcgagctc gacgccgatc acttcggcga acaccacgcg
     2641 gatcatctcc tcgacggtgt cctgcacgtc gcgctcggac acccacgcga actccatgtc
     2701 gagctgggtg aactcgagct ggcggtcggc gcgcagcgcc tcgtcgcgga agcagcgcgc
     2761 gatctggtag tagcggtcga agcccgccac catcaggatc tgcttgaaca gctgcggcga
     2821 ctgcggcagc gcgtagaact cgccggggtg catgcgcgcg ggcaccagga agtcgcgcgc
     2881 gccctcgggc gtggccttgg tcaggatcgg ggtctcgata tcctggaaac cggcaccatc
     2941 cagatggcgg cgcaaggcct gtaccagctt ggtgcgcgt
//
LOCUS       DATIQC010000106         1647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_183774, whole genome shotgun sequence.
ACCESSION   DATIQC010000106 DATIQC010000000
VERSION     DATIQC010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183774"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..157
                     /locus_tag="VLM17_02290"
     CDS             <1..157
                     /locus_tag="VLM17_02290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006453251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64420.1"
                     /translation="ACLQPKQTLNYAGRSRSPSPAAGHLAEHVAEQAQLVADALVNAV
                     SGDTCAE"
     gene            189..1412
                     /gene="sucB"
                     /locus_tag="VLM17_02295"
     CDS             189..1412
                     /gene="sucB"
                     /locus_tag="VLM17_02295"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008572000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0006554 - lysine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HSR64421.1"
                     /translation="MAIEVKVPVLPESVSDATIATWHKKAGDAVKRDENLLDLETDKV
                     VLEVPSPVDGVLKEIRFDTGATVTSQQVLAIIEEGAAAASPAPAPGGDVKKEATKAAT
                     KAADSGAAPIVPKAEAKAAPAGVEQLPPGARFTATKEGVDVSQVEGTGRRGAVTKEDI
                     VNYASGKTGGVSAGARPEERVPMTRMRARIAERLMQSKNSIAMLTSFNEVNLAKVMQM
                     RKELGEQFQKDHGIKLGFMSFFAKAAANALQRHPVVNASVDGNDVVYHGYADISIAVS
                     TDKGLVTPVLRNVERMGFADIEAQIAEYAKKARDGKIGLDDLQGGTFTITNGGTFGSL
                     LSTPIVNPPQSAILGMHAIKDRPIAENGQVVIAPMMYIALSYDHRIIDGKDAVLFLVD
                     IKNQLENPHRMLLGM"
BASE COUNT          321 a          586 c          531 g          209 t
ORIGIN      
        1 cgcctgcctg cagccgaagc agacgctgaa ctacgccggg cgctcgcgct cgccctcgcc
       61 cgccgccggc cacctggcgg agcacgtggc ggagcaggcg caactcgtcg ccgacgcgct
      121 ggtcaacgcc gtctccggcg acacctgcgc cgaataacct tcatccgatt tactgacagg
      181 acgccaccat ggccatcgaa gtcaaagtcc cggtccttcc cgaatccgtc tcggacgcga
      241 ccatcgccac ctggcacaag aaggccggcg acgcggtcaa gcgcgacgag aacctgctgg
      301 acctggaaac cgacaaggtc gtgctggagg tgccctcgcc ggtcgacggc gtgctgaagg
      361 aaatccggtt cgacaccggc gccacggtga ccagccagca ggtgctggcg atcatcgagg
      421 aaggagcggc cgccgcctcg ccggcacccg ctcccggtgg cgacgtgaag aaggaagcca
      481 ccaaggcggc gacgaaggcc gccgattcgg gcgccgcgcc gatcgtcccg aaggccgagg
      541 cgaaggccgc gccggccggc gtcgagcagc tgccgccggg cgcgcgcttc accgcgacga
      601 aggaaggcgt cgacgtatcg caggtcgaag gtaccggccg ccgcggcgcg gtgaccaagg
      661 aagacatcgt caactacgcc agcggcaaga ccggcggcgt gtccgcgggc gcgcgtccgg
      721 aagagcgcgt gccgatgacc cgcatgcgcg cccgcatcgc cgagcgcctg atgcagtcga
      781 agaactccat cgcgatgctg acctccttca acgaggtcaa cctcgcgaag gtcatgcaga
      841 tgcgcaagga gctgggcgag cagttccaga aggaccacgg catcaagctc ggcttcatga
      901 gcttcttcgc caaggccgcc gcgaacgcgc tgcagcgaca cccggtcgtc aacgcgtcgg
      961 tcgacggcaa cgacgtcgtc taccacggct acgccgacat ctcgatcgcg gtctcgaccg
     1021 acaagggcct ggtcaccccg gtgctgcgca acgtcgagcg catgggcttc gcggacatcg
     1081 aagcgcagat cgcggagtac gcgaagaagg cgcgcgacgg caagatcggc ctcgacgacc
     1141 tccagggcgg caccttcacc atcaccaacg gcggcacctt cggctcgctg ctgtcgacgc
     1201 cgatcgtcaa cccgccgcag agcgcgatcc tcggcatgca cgccatcaag gaccgcccga
     1261 tcgccgagaa cggccaggtc gtgatcgcgc cgatgatgta catcgcgctg tcctacgacc
     1321 accgcatcat cgacggcaag gacgcggtgc ttttcctggt cgacatcaag aaccagctcg
     1381 agaacccgca ccggatgctg ctgggcatgt gatgccttca atctcctccc ccgcttgcgg
     1441 gggagggcta gggtgggggc tttcgcgaac gaccgccccc catcccaacc ttcccccgca
     1501 cgcgggggaa ggagccaaac accaagcgag aacaagatga gcgaacagcc cgcttcaaac
     1561 cagcaagcct tcgacgactg cggcgcctgc cccgacgtgt gcggcgacag ccgctgcggg
     1621 cccaccgagg actgcgagag ctgccag
//
LOCUS       DATIQC010000107         2447 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_77862, whole genome shotgun sequence.
ACCESSION   DATIQC010000107 DATIQC010000000
VERSION     DATIQC010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77862"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..977)
                     /locus_tag="VLM17_02300"
     CDS             complement(<1..977)
                     /locus_tag="VLM17_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005409528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSR64422.1"
                     /translation="MAAVVSDICADFLVEAREIVSQLGEQMVALEHAPDDREGLNTVF
                     RGFHTVKGGAGFLDFVAMVRLCHAVEERLDVARGGERPLDEAAFDATQQAIDLLADML
                     DAVAAGEALEMPPAALLDALRLDATPATRKPAPAAGSATPADPVEDDFDFEALLDSLH
                     GKGGAPGALAVDTPAAVPPPPPPLPARAAAAAPRPAARAPRASAANDADTTVRVDVRR
                     LDAMINLVGELVMARNRLKTIRPRLRDEDLDRAVTALDAATSRLQSAVMTARMQPVGR
                     VFARFPKLARDVARQLDKSVDLEVIGADTELDRNLVEALADPLVHLVRNA"
     gene            complement(981..1613)
                     /locus_tag="VLM17_02305"
     CDS             complement(981..1613)
                     /locus_tag="VLM17_02305"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0050920 - regulation of chemotaxis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HSR64423.1"
                     /translation="MSERLGREERQQVIRRVRAALWAIEHDDEPAFRAQVDALIEWRN
                     QPLVQGLARLARELGVALGESDAASIGGSLPEACARLEHVVRVSEDASHRTLDLIEQC
                     SGLLARLATPASRADAEALAGIRMRLAEMTAAQGYQDLNGQVLMRVVDLVRCVHAGLG
                     APEPDLRPLQLPGAPGTSDQGRGHGPAVAGGDAAPATQDEANDLLSALGL"
     gene            complement(1610..2002)
                     /gene="cheY"
                     /locus_tag="VLM17_02310"
     CDS             complement(1610..2002)
                     /gene="cheY"
                     /locus_tag="VLM17_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HSR64424.1"
                     /translation="MDKNIRILIVDDFSTMRRIVKNLLNDLGFFNTAEADDGHSALAE
                     LRKGPFDLIITDWNMPGMPGIDLLKQVRADATLAKIPVLMVTAEAKREQIIEAAQAGV
                     NGYVIKPFTAQTLGDKLGKIFERLESAA"
     gene            complement(2173..>2447)
                     /locus_tag="VLM17_02315"
     CDS             complement(2173..>2447)
                     /locus_tag="VLM17_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR64425.1"
                     /translation="EPRLARHEGLTPARAFEDGAFRAALGGAIGQLPEREQLVLSLYY
                     EQEMNLREIGAVLNVSESRVCQIHGQAMLRLRARLGDWKRDALDEG"
BASE COUNT          299 a          865 c          935 g          348 t
ORIGIN      
        1 gcgttgcgca ccaggtgcac cagcggatcg gccagcgcct cgacgaggtt gcggtcgagt
       61 tcggtatcgg cgccgatgac ctcgaggtcg acggacttgt cgagctggcg ggcgacgtcg
      121 cgcgcgagct tcgggaagcg cgcgaacacg cgccccaccg gctgcatgcg cgcggtcatc
      181 accgccgact gcaggcgcga ggtggcggcg tccagcgcgg tgaccgcgcg gtcgaggtcc
      241 tcgtcgcgca ggcgcgggcg gatggtcttg aggcggttgc gcgccatcac cagctcgccg
      301 acgaggttga tcatcgcgtc gagccggcgc acgtcgacgc gcacggtggt gtcggcgtcg
      361 ttggcggcgc tggcgcgcgg cgcgcgcgcg gcgggcctgg gcgccgcggc cgcggccctg
      421 gccggcaacg gcggaggcgg cggcgggaca gcggcgggcg tgtccacggc cagcgccccg
      481 ggcgcgccgc ccttgccgtg caggctgtcg agcagcgcct cgaagtcgaa gtcgtcctcc
      541 accgggtcgg cgggcgtcgc ggacccggcg gcgggcgccg gcttgcgcgt cgccggcgtg
      601 gcgtccaggc gcagcgcgtc gagcagcgcg gcgggcggca tctccagcgc ctcgccggcc
      661 gccaccgcgt cgagcatgtc ggcgagcagg tcgatcgcct gctgggtggc gtcgaaggcg
      721 gcttcgtcga gcgggcgctc gccgccgcgg gcgacgtcga gccgttcctc caccgcgtgg
      781 cacaggcgca ccatcgcgac gaaatcgagg aagccggcgc cgcccttgac cgtgtggaag
      841 ccgcggaaga cggtgttcag gccctcgcgg tcgtccggcg catgctcgag cgcgaccatc
      901 tgctcgccga gctgcgacac gatctcgcgc gcctcgacga ggaaatccgc acagatgtcg
      961 gagacgaccg cggccatcgc ttacagcccc agcgccgaga gcaggtcgtt ggcctcgtcc
     1021 tgcgtcgccg gcgcggcgtc gccgccggcc accgccgggc cgtggccacg gccctgatcg
     1081 gacgtgcccg gcgcgcccgg cagctgcagc ggccgcaggt ccggctccgg cgcgccgagc
     1141 ccggcgtgca cgcaacgcac gaggtcgacc acgcgcatca gcacctggcc gttgaggtcc
     1201 tggtaaccct gcgcggcggt catttccgcc aggcgcatgc ggatgcccgc gagcgcctcg
     1261 gcatcggcgc ggctggcggg cgtggccagg cgcgcgagca ggccgctgca ttgctcgatc
     1321 aggtcgagcg tgcggtggct ggcgtcctcg ctcacgcgca cgacgtgttc caggcgcgcg
     1381 caggcttccg gcagcgagcc gccgatcgac gccgcgtcgc tctcgcccag cgccacgccg
     1441 agttcgcgcg ccagccgcgc caggccctgg accagcggct ggttgcgcca ttcgatcagc
     1501 gcgtcgacct gggcgcggaa cgccggctcg tcgtcgtgct cgatcgccca cagcgccgcg
     1561 cgcacgcggc ggatcacctg ctggcgctcc tcgcggccca ggcgctcgct cacgcggcgc
     1621 tctccagccg ctcgaagatc ttgccgagct tgtcgccgag ggtctgcgcg gtgaacggct
     1681 tgatcacgta gccgttcacg ccggcctgcg cggcctcgat gatctgttcg cgcttggcct
     1741 cggcggtgac catcagcacc gggatcttgg cgagcgtggc gtcggcgcgg acctgcttga
     1801 gcaggtcgat gcccggcatg cccggcatgt tccagtcggt gatgatcagg tcgaacgggc
     1861 ccttgcgcag ctcggcgagc gcgctgtggc cgtcgtcggc ttcggcggtg ttgaagaagc
     1921 cgaggtcatt gagcaggttc ttgacgatgc ggcgcatcgt cgagaagtcg tcgacgatca
     1981 ggatgcggat gttcttgtcc atctcttgga attcgggttt gacggaaagg ctatcggcgg
     2041 ggcgggaagg aacttgaacg gaccgccggc ggcgggcttc ggggcgccgt ccgcgcgaag
     2101 cccgcgcccg gggcgaaggg tcgccgcggc cgtcgcagga gggcgcgagc gatcggggat
     2161 ccggtgcgtc ggctagccct cgtccagcgc gtcgcgcttc cagtcgccca gccgcgcgcg
     2221 caggcggagc atggcctggc cgtggatctg gcagacgcgc gattcgctga cgttgagcac
     2281 cgcgccgatc tcgcgcaggt tcatctcctg ctcgtagtag agcgagagca ccagctgctc
     2341 gcgttcgggc agctggccga tggcgccgcc gagcgcggcg cggaaggcgc cgtcctcgaa
     2401 cgcgcgcgcc ggcgtcaggc cctcgtgccg ggccaggcgc ggttcgc
//
LOCUS       DATIQC010000108         1942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_290102, whole genome shotgun sequence.
ACCESSION   DATIQC010000108 DATIQC010000000
VERSION     DATIQC010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290102"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VLM17_02320"
     CDS             <1..504
                     /locus_tag="VLM17_02320"
                     /inference="COORDINATES: protein motif:HMM:NF017269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HSR64426.1"
                     /translation="YTESNSYAGGYGDYRNDGYRNDGYGNGYYRNDGSYNGGSSTARN
                     VATIVGGVLGAAIGSQVGGGSARYATSAIGSMVGGMAGRQVYDSAHRPTRVATVQVCD
                     PVNAGQAGYYGGNTYSGSGYGGNGYDASGVDGYDVTYEYAGRTYVTRSRYNPGNRIRV
                     RVDVHPE"
     gene            complement(559..1455)
                     /locus_tag="VLM17_02325"
     CDS             complement(559..1455)
                     /locus_tag="VLM17_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009592018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HSR64427.1"
                     /translation="MTRRYRQVDVFADHPGAGNPLAVVLDAGACPEQGRRGLDDATMQ
                     AIARWTRLPETTFVFPPTTPEASYRLRIFSPRREVPFAGHPSVGTAHVALDAGVAVPR
                     DGVLVQEGVAGLLPLHVSGAGLERVVAVRTPRARIGEIAASDDPRLQAALRGLPPGAL
                     PPALMDGGRRWWIAEVADEAALRAATPDWTAIARLAHDTDTMGLCAFARSTDPVYYLA
                     VRAWVGAPAAFEDAASGAANATLAAWLASQGALPGSGGFYRVSQGREVGHDAIIELQV
                     DAAGDVWSGGRACTIVRGEIDW"
     gene            complement(1452..>1942)
                     /locus_tag="VLM17_02330"
     CDS             complement(1452..>1942)
                     /locus_tag="VLM17_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HSR64428.1"
                     /translation="LARHEGALPAGLATLAAPGTTAALWDNGPRWWLVELADADAVRT
                     MRPDLAAIAALTRATGAVGLAVHGRAPAGADHQLAVRAYCPADNIPEDPVTGSANACI
                     AAQLARAGAAPGVDGRYLASQGRELGRDGRIEVTVDAEGEAWIGGAVQLVIDGELHWS
                     PA"
BASE COUNT          259 a          721 c          723 g          239 t
ORIGIN      
        1 tacaccgaga gcaacagcta cgccggcggt tacggcgact accgaaacga cggctatcgc
       61 aacgacggct acggcaacgg ctactaccgc aacgacggtt cctacaacgg aggcagcagc
      121 accgcgcgca acgtcgccac catcgtcggc ggcgtgctcg gcgcggcgat cggcagccag
      181 gtcggcggcg gttcggcgcg ctacgcgacg tcggcgatcg gctcgatggt cggcggcatg
      241 gctggccggc aggtctacga cagcgcgcac cggcccacgc gcgtggccac ggtgcaggtc
      301 tgcgatccgg ttaacgccgg ccaggccggc tattacggcg gcaacaccta cagcggcagc
      361 ggctacggcg gcaacggcta cgatgccagc ggcgtcgatg gctacgacgt cacctacgaa
      421 tacgccggcc gcacctacgt cacccgcagc cgctacaacc cgggcaaccg catccgcgtg
      481 cgggtggacg tgcatccgga gtgacgcgcc cggcgccgac gtcgaagggg ccgcgaggcc
      541 ccttcgtttt cgggtcggtc accagtcgat ctccccgcgc acgatggtgc aggcgcgccc
      601 gcccgaccag acgtcgccgg cggcgtccac ctgcagttcg atgatcgcgt cgtggccgac
      661 ttcgcggccc tggctgacgc ggtagaagcc gccgctgccg ggcagcgcgc cctgcgaggc
      721 cagccacgcc gccagcgtcg cattggccgc gcccgacgcg gcgtcctcga acgccgccgg
      781 cgcgccgacc cacgcgcgca ccgctaggta atagaccgga tcggtgctgc gcgcgaacgc
      841 gcacaggccc atggtgtcgg tgtcgtgggc gaggcgcgcg atcgcagtcc agtccggggt
      901 ggccgcgcgc agcgccgctt cgtcggcgac ctcggcgatc caccagcgcc ttccgccgtc
      961 catcagcgcc ggcggcagcg cgccgggcgg cagcccgcgc agcgcggcct gcaggcgggg
     1021 atcgtcgctg gctgcgatct cgccgatgcg cgcgcgcggc gtgcgcaccg cgaccacccg
     1081 ttcgaggccc gcgccactga cgtgcagcgg cagcaggccg gcgacgcctt cctgcaccag
     1141 cacgccgtcg cgcggcaccg cgacgccggc gtccagcgcg acatgcgcgg tgcccacgct
     1201 cggatggccg gcgaagggca cctcgcggcg cggactgaag atgcgcaggc ggtagctggc
     1261 ttccggcgtg gtcggcggga agacgaaggt ggtttccggc aaccgcgtcc agcgcgcgat
     1321 cgcctgcatg gtggcgtcgt cgaggcccct tcggccttgc tcggggcagg ctccggcatc
     1381 cagcaccacc gcgagcggat tgcccgcgcc cggatggtcg gcgaacacgt cgacctggcg
     1441 gtaacggcgg gtcatgcggg gctccagtgc agctcgccgt cgatgacgag ctgcaccgcg
     1501 ccgccgatcc aggcctcgcc ttcggcgtcg accgtgacct cgatccggcc gtcgcggccg
     1561 agttcgcggc cctggctggc gaggtagcgg ccgtccacgc cgggcgctgc gccggcgcgg
     1621 gccagctggg cggcgatgca ggcgttggcg ctgcccgtca ccgggtcctc ggggatgttg
     1681 tcggcggggc agtaggcgcg caccgccagc tgatggtcgg cgccggcggg cgcgcggccg
     1741 tgcacggcca ggcccacggc gccggtggcg cgggtcagcg cggcgatcgc ggcgaggtcg
     1801 ggccgcatcg tgcgcacggc gtccgcatcg gccagttcga ccagccacca gcgcgggccg
     1861 ttgtcccaga gcgcggccgt ggtgcccggc gcggcaagcg ttgccaagcc ggccggcagc
     1921 gctccctcgt ggcgggccag ct
//
LOCUS       DATIQC010000109         4060 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_113238, whole genome shotgun sequence.
ACCESSION   DATIQC010000109 DATIQC010000000
VERSION     DATIQC010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113238"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..766
                     /locus_tag="VLM17_02335"
     CDS             44..766
                     /locus_tag="VLM17_02335"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR64429.1"
                     /translation="MNAPELSVVVPVFNEQDNVGPLVGEIVTALRGRLPFEIVYVDDH
                     SRDGTLSALQRLKQDAPELRVLHHVSQSGQSTAVRTGVRAARGAWIATLDGDGQNDPA
                     DIPKLLAQRDGAPGDVKLFAGWRVNRQDTGSKRWASRWANRIRARMLRDATPDTGCGI
                     KLFERDAFLDLPYFDHMHRYLPALMQRAGWKTVSVPVNHRARASGVSKYNNLNRALVG
                     IADLRGVAWLIRRSKRTAVEEI"
     gene            766..1128
                     /locus_tag="VLM17_02340"
     CDS             766..1128
                     /locus_tag="VLM17_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase N-terminal
                     domain-containing protein"
                     /protein_id="HSR64430.1"
                     /translation="MLPAPVPVSVPGFMDTPIPWLVWTGLHASPWKLIGWGGALMFSG
                     RWFVQLIASRRFGKPVVPRAFWYMSIVGSLMTLAYFIFGKNDSVGVLQNLFPTFTAGY
                     SLWLDIQHRGWHRDKASH"
     gene            1434..1670
                     /gene="rpmB"
                     /locus_tag="VLM17_02345"
     CDS             1434..1670
                     /gene="rpmB"
                     /locus_tag="VLM17_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018347033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HSR64431.1"
                     /translation="MSRECQVTGKRVATGNNVSHANNKTRRRFLPNLHERRFWVASEN
                     RWVRLRVSTAALRTIDKNGIDSVLADLRARGEKI"
     gene            1684..1848
                     /gene="rpmG"
                     /locus_tag="VLM17_02350"
     CDS             1684..1848
                     /gene="rpmG"
                     /locus_tag="VLM17_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012446430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HSR64432.1"
                     /translation="MASKRDKIRLISSANTGHFYTTDKNKKNTPNKMEVKKYDPVVRK
                     HVIYKEGKIK"
     gene            2022..>4060
                     /locus_tag="VLM17_02355"
     CDS             2022..>4060
                     /locus_tag="VLM17_02355"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010484133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HSR64433.1"
                     /translation="MSLQRSALALALLVAVAACKPAANTAAPEAPATAAAHAPTAGVD
                     LTGIDRAIQPGDDFDGYANGAWRAQAVIPEDRSSMGVGFDVFQKAEKRNAELVQGLAK
                     TNPAAGTDARRIADYYAAYMDQAGIEQRGTAPLKPAFAKIDAIASGTDLARVLGEGLR
                     ADVDPLNATNYQTEHLFGLFVAQGLEDPQHNMAYLLQGGLGMPNRDYYLSTDPAMVAI
                     RDKYKAYIAALLKQAGVADADKKAAGIYALEEKIARAQASIVETEDVHKANNPWPLAD
                     FAKKAPGLDWATYFQAAGLADQPAIDAWQPGAITKLSALTASEPLQAWKDWLAFHAIN
                     EHTAVLPKAFDELSFGFYGTTLTGTPKQRDRWKRALGATNVALGDAVGQLYVQKYFPA
                     SSRAQVQQLVNNLLAVFPERIDKLDWMSPGTKEKAKAKVAATKVGVGYPDRWRDYGRI
                     DIKAGDAFGNLDRARLYETQHQVAKLHDTVDRNEWWMTPQTVNAVNLPLQNALNFPAA
                     ILEPPFFDPGADAAANYGAIGAIIGHEISHSFDNTGAEFDAQGRLANWWTPADLAHFK
                     AAGQKLVKQYDAYEALPGLHLNGAQTLGENIADLAGLSVAHDAYLKSLGGKPAPVIDG
                     LSGDQRFFLAFAQAWREKKRDAAMRAQVVQDGHAPGQFRAQTVRNIDAWYDAFGA"
BASE COUNT          688 a         1498 c         1337 g          537 t
ORIGIN      
        1 cgcaggtcgt cgcctggtgc cgcgactatt tcggagccaa cgcatgaacg cgcccgagtt
       61 gtcggtggtc gtgccggtgt tcaacgagca ggacaacgtc ggcccgctgg tcggcgagat
      121 cgtcactgcg ctgcgcggac gcctgccctt cgagatcgtc tacgtggacg accattcgcg
      181 cgacggcacg ctgtcggcgc tgcagcggct gaagcaggac gcgccggagc tgcgcgtgct
      241 gcaccacgtc tcgcagagcg ggcagagcac cgcggtgcgc accggcgtca gggccgcgcg
      301 cggcgcgtgg atcgccaccc tcgacggcga cggccagaac gacccggccg acatccccaa
      361 gctgctggcg cagcgcgacg gcgcgccggg tgacgtcaag ctgttcgccg gctggcgggt
      421 caaccgccag gacaccggaa gcaagcgctg ggcctcgcgc tgggccaacc ggatccgcgc
      481 gcgcatgctg cgcgacgcca cgcccgacac cggctgcggg atcaagctgt tcgagcgcga
      541 cgccttcctc gacctgccct atttcgacca catgcaccgc tacctgccgg cgctgatgca
      601 gcgcgccggc tggaagacgg tgagcgtgcc ggtcaaccac cgcgcgcgcg ccagcggcgt
      661 atccaagtac aacaacctca accgcgcgct ggtcgggatc gccgacctgc gcggcgtggc
      721 ctggctgatc cggcgcagca agcgcaccgc ggtggaggaa atctgatgct gcccgcgccc
      781 gtgcccgtga gcgtgcccgg cttcatggac acgccgatcc cgtggctggt gtggaccggc
      841 ctgcacgcca gtccgtggaa gctgatcggc tggggcggcg cgctgatgtt cagcggccgc
      901 tggttcgtgc agctgatcgc ctcccggcgc ttcggcaagc cggtggtgcc gcgcgcgttc
      961 tggtacatga gcatcgtcgg cagcctgatg acgctcgcct acttcatctt cggcaagaac
     1021 gactcggtcg gcgtgctgca gaacctgttc ccgaccttca ccgcgggcta cagcctgtgg
     1081 ctggacatcc agcaccgcgg ctggcaccgg gacaaggcgt cgcactagga gtgccgtggc
     1141 ccgggcaagc cgaaggcgca cccgggaaga gtgggcgatc cagagcgcac ccgggtgcgc
     1201 tgcgcgtccc ggcatcctgt ggataactgc ttgcccggcc gcttccgggc gggcataatg
     1261 cgcggctcgc tgcgtccggc cgccccgtgg ggcctggccg ggcggactcc ggaagcacga
     1321 ttccgggccg ccgccggcag caccgcgtca cgcccgcatc gtgcgccacc ccggtggcgg
     1381 ggccgcccgt ctccctggcc aagggagcca acacccatac cgtcgaggta cgtatgtccc
     1441 gcgaatgcca agtcaccggc aagcgcgtcg cgaccggcaa caacgtgtcg cacgcgaaca
     1501 acaagacccg ccgccgcttc cttcccaacc tgcacgagcg ccgcttctgg gtggcctcgg
     1561 agaaccgttg ggtccggctg cgcgtttcca ccgctgccct gcgcaccatc gacaagaacg
     1621 gcatcgattc cgtcctggcc gatctccgcg cccgcggcga gaagatctga ggaggactga
     1681 accatggcgt ccaagcgcga caagatccgg ctgatttcct cggccaacac cggtcacttc
     1741 tacacgaccg acaagaacaa gaagaacacg ccgaacaaga tggaggtcaa gaagtacgac
     1801 cccgtcgtcc ggaagcacgt gatctacaag gaaggcaaga tcaagtaagg ccccggcctt
     1861 gcaacgatcc gcgaagggct cccacggggg cccttctgct ttttgcggcc cgggtttttt
     1921 gcccgaaccg gccgcacggc cgcccggtga cttccagcac cgtgcgcccc ccgccggccg
     1981 gcgctaaggt ggcgctcccg tccccgaccc ggacccgtgc catgtccctc cagcgctccg
     2041 cgctcgccct tgcgctcctc gtcgccgttg ccgcctgcaa gcccgccgcc aacaccgccg
     2101 cgcccgaggc gccggccacg gccgccgcgc atgcccccac cgccggcgtc gacctgaccg
     2161 gcatcgaccg tgcgatccag ccgggcgacg acttcgacgg ctacgccaac ggcgcctggc
     2221 gcgcgcaggc cgtgatcccg gaagaccgct ccagcatggg cgtgggcttc gacgtcttcc
     2281 agaaggcgga aaagcgcaac gccgagctgg tgcagggcct ggccaagacc aatccggccg
     2341 ccggcaccga tgcgcgccgc atcgcggact actacgccgc gtacatggac caggccggca
     2401 tcgagcagcg cggcaccgcg ccgctcaagc ccgcgttcgc caagatcgac gcgatcgcca
     2461 gcggcaccga cctcgcgcgc gtgctcggcg agggcctgcg cgccgacgtc gacccgctca
     2521 acgcgaccaa ctaccagacc gagcacctgt tcggcctgtt cgtcgcgcag gggctcgagg
     2581 atccgcagca caacatggcc tacctgctgc agggcggcct cggcatgccc aaccgcgact
     2641 actacctgtc gaccgatccg gcgatggtcg ccatccgcga caagtacaag gcctacatcg
     2701 ccgcgctgct gaagcaggcc ggcgtcgccg acgccgacaa gaaggcggcc ggcatctacg
     2761 cgctggagga gaagatcgcc agggcgcagg cctcgatcgt cgagaccgag gacgtgcaca
     2821 aggccaacaa cccgtggccg ctcgccgact tcgcgaagaa ggcgccgggc ctggactggg
     2881 ccacgtattt ccaggcggcg ggcctcgccg accagccggc catcgacgcc tggcagcccg
     2941 gcgcgatcac caagctctcg gcgctgaccg ccagcgagcc gctgcaggcc tggaaggact
     3001 ggctggcctt ccatgcgatc aacgagcaca ccgccgtgct gcccaaggcc ttcgacgagc
     3061 tgtcgttcgg cttctacggc accacgctca ccggcacgcc gaagcagcgc gaccgctgga
     3121 agcgcgcgct cggcgccacc aacgtcgcgc tcggcgacgc ggtcggccaa ctctacgtgc
     3181 agaagtattt cccggcgtcc tcgcgcgcgc aggtgcagca gctggtcaac aacctgctgg
     3241 ccgtgttccc ggagcgcatc gacaagctcg actggatgag cccggggacg aaggagaagg
     3301 ccaaggccaa ggtggccgcg accaaggtcg gcgtcggcta cccggaccgc tggcgcgact
     3361 acggccgcat cgacatcaag gccggcgacg ccttcggcaa cctcgaccgc gcgcgcctgt
     3421 acgagaccca gcaccaggtc gccaagttgc acgacaccgt cgaccgaaac gaatggtgga
     3481 tgacgccgca gacggtcaac gcggtcaacc tgccgctgca gaacgcgctg aacttcccgg
     3541 ccgcgatcct ggagccgccg ttcttcgacc cgggggcgga cgccgccgcc aactacggcg
     3601 cgatcggcgc gatcatcggc cacgagatca gccacagctt cgacaacacc ggcgccgagt
     3661 tcgatgccca gggccgcctc gccaactggt ggacgccggc cgacctcgcc cacttcaagg
     3721 ccgccggcca gaagctggtc aagcagtacg acgcctacga ggcgctgccc ggcctgcacc
     3781 tcaacggtgc gcagacgctg ggcgagaaca tcgccgacct cgccgggctc tcggtggcgc
     3841 acgatgccta cctgaagtcc ctgggcggca agccggcgcc ggtgatcgac ggcctgagcg
     3901 gcgaccagcg cttcttcctc gccttcgccc aggcctggcg cgagaagaag cgcgacgcgg
     3961 cgatgcgcgc gcaggtggtg caggacgggc acgcaccggg ccagttccgc gcacagacgg
     4021 tgcgcaacat cgacgcgtgg tacgacgcat tcggcgccaa
//
LOCUS       DATIQC010000110         1565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_431236, whole genome shotgun sequence.
ACCESSION   DATIQC010000110 DATIQC010000000
VERSION     DATIQC010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431236"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..498)
                     /locus_tag="VLM17_02360"
     CDS             complement(<1..498)
                     /locus_tag="VLM17_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR64434.1"
                     /translation="MNDAPLQPSDEALMLAWASGDADAFTSLYARHRTRLYRYLLRQL
                     RDPALSDEFFQDVWQRVIGARRGWSPDAAFATWLYRIAHNRLADHWRALQHRPPAPAD
                     ADERAARIPDPDTPERTLSDFEQRRRLQLALDDLPPEQREVLLLRLEQELTLEEIGAF
                     TGVGRE"
     gene            629..967
                     /locus_tag="VLM17_02365"
     CDS             629..967
                     /locus_tag="VLM17_02365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64435.1"
                     /translation="MSTGSLIAGRATDQQAGAAHLAPAADGLADALAAALPPGSQLLA
                     LGRAEEGTVELAATGGVAPALRAHAAAVLDGDPASATAGLVDRWDEAGARCVLAVHLS
                     EPMAAHALAA"
     gene            971..>1565
                     /locus_tag="VLM17_02370"
     CDS             971..>1565
                     /locus_tag="VLM17_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019400005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSR64436.1"
                     /translation="MLARRTLSATFAARRAQARIDSLQRTQRLQHALYEIADLASANL
                     EMGEMLDRIHALVGGLMYAANFFIVLYDELHEAVRFLYFADQRDPWVPDPDSEIPVAE
                     MGNSLTVALLRHGKPLRGPSARLRRDIGVQLDPRHGPDSADWLGVPMRRDERVSGAIV
                     VQSYDRPGVYSDDDRALLEYVAQHIQTALDRKQLQVEL"
BASE COUNT          206 a          553 c          606 g          200 t
ORIGIN      
        1 ctcgcggccg acgccggtga acgcgccgat ctcctccagc gtcagttcct gttccagccg
       61 cagcagcagg acctcgcgct gctcgggcgg caggtcgtcg agcgcgagct gcaggcggcg
      121 ccgctgctcg aagtcggaca gggtgcgctc gggcgtgtcg gggtcgggta tgcgcgcggc
      181 gcgctcgtcc gcatcggccg gcgcgggcgg gcgatgctgc agcgcgcgcc agtggtcggc
      241 caggcggttg tgggcgatcc ggtagagcca ggtggcgaag gcggcgtcgg gcgaccagcc
      301 gcggcgcgcg ccgatgaccc gctgccagac gtcctggaag aactcgtcgg agagcgccgg
      361 atcgcgcagc tggcgcagca ggtagcggta cagccgggtg cgatggcgcg cgtacagcga
      421 cgtgaacgcg tcggcgtcgc ccgaagccca cgccagcatc agcgcttcgt cgctgggctg
      481 gaggggggcg tcgttcatcg ccggcagggt aagcgctgcg ccggcgggcg ggaagccgga
      541 acgtgggcgg gacagggcca tcgtccggac aacgggcggg cgccgcgaac ggggttccgg
      601 tacggccgtc acgggttatc ctcgcgccat gagcacgggg agcctcatcg ccgggcgggc
      661 cacggaccag caggcgggcg cggcgcacct tgccccggcg gcggatggcc tggccgacgc
      721 gctcgctgcc gcgctgccgc cgggctcgca actgctggcg ctgggccgcg cggaagaggg
      781 cacggtcgaa ctcgcggcta ccggcggcgt ggcgcctgcg ctgcgcgccc acgccgcggc
      841 ggtcctcgat ggcgacccgg cgtcggcgac ggcggggctg gtcgaccgct gggacgaggc
      901 cggcgcgcgc tgcgtgctgg ccgtgcacct gtccgaaccg atggccgcgc atgccctcgc
      961 ggcctagcgc gtgctcgccc ggcgcacgct gtcggcgacg ttcgccgcgc ggcgggcgca
     1021 ggcccgcatc gactcgctgc aacggaccca gcggctgcag cacgcgctct acgagatcgc
     1081 cgacctcgcc agcgccaacc tcgaaatggg cgagatgctc gaccgcatcc acgccctcgt
     1141 cggcgggctg atgtacgccg ccaatttctt catcgtcctg tacgacgaac tgcacgaggc
     1201 ggtgcgcttc ctgtatttcg ccgaccagcg cgacccgtgg gtgccggatc cggacagcga
     1261 gatcccggtc gccgaaatgg gcaacagcct gaccgtcgcg ctgctgcggc acggcaagcc
     1321 gctgcgcggg ccgtcggcgc gcctgcgccg cgacatcggc gtgcagctcg atccgcgcca
     1381 cggtcccgac agcgccgact ggctgggcgt gccgatgcgt cgcgacgagc gggtcagcgg
     1441 cgcgatcgtg gtccagagct acgaccggcc gggggtctat tcggacgacg accgggcgct
     1501 gctcgagtac gtcgcccagc acatccagac cgcgctggac cgcaagcagc tgcaggtcga
     1561 gctgg
//
LOCUS       DATIQC010000111         1681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_254752, whole genome shotgun sequence.
ACCESSION   DATIQC010000111 DATIQC010000000
VERSION     DATIQC010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254752"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..401)
                     /locus_tag="VLM17_02375"
     CDS             complement(<1..401)
                     /locus_tag="VLM17_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007508641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR64437.1"
                     /translation="MSADLVRQGLTELLPRLRRLARVLTGHVADADDLVQVALERALA
                     RAGQWRPDARLDAWVFGILRNAWLDEVRARGRRQRMFAPEEAAAMVGEASMERHVQSL
                     SVAAALAQLPEEQREAVALVLVEGLSYAEAA"
     gene            558..>1681
                     /locus_tag="VLM17_02380"
     CDS             558..>1681
                     /locus_tag="VLM17_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HSR64438.1"
                     /translation="MRLRSALVVPLLLFAGGAGAQLLPAGPALPQLPGRLVGATLQRT
                     LDDPALRAPLSALRRLRIDTLLHDQRRRVDLDGHGEPVLRGEFLLLGGDAATLAAVQA
                     VGFTATRRDDGEGLGLDLFVLRDTRDRSAIRAMLELQQAAPQAAFAFQHLYLPAGAAG
                     ARAAPDEAKAAGDAASPLRIGLIDGGVDARDPAFAGLRLERHGCAGAAAADPHATAVA
                     ERLAGHARGVLYAADLWCGDPVGRATLGLVDALAWMARERVPVVNISLVGPDNPVLAR
                     AIAALVARGHVVVAAVGNDGPAAPPLYPASYPGVIGVSGVDAKLRALPEAASGAQVDF
                     AASGIDGDGRHALRGTSFAAPVVARLAALRVHAPTPGAGA"
BASE COUNT          181 a          655 c          636 g          209 t
ORIGIN      
        1 tccgccgcct ccgcgtagga caggccttcg accagcacca gcgcgaccgc ctcgcgctgt
       61 tcctccggca gttgcgcgag cgcggcggcg accgagagcg actgcacgtg gcgctccatg
      121 ctcgcctcgc ccaccatcgc cgccgcctcc tccggcgcga acatccgttg ccggcggccg
      181 cgcgcgcgca cctcgtccag ccaggcattg cgcaggatgc cgaacaccca tgcatccagg
      241 cgcgcgtccg ggcgccactg cccggcgcgg gcgagcgcgc gctcgagcgc gacctgcacg
      301 aggtcgtcgg cgtcggcgac gtggcccgtg agcacgcgcg ccagcctgcg caggcgcggc
      361 agcaactcgg tcaggccctg gcggacgagg tcggcactca cgctggtttt cgtggatccc
      421 tacgtacgga ggccgcgctt ccttccatcg ccacgtccgg aatcggacac ggcccgcgct
      481 gcgttcagcg cggggcaagc gacgggagca cgggcgcggc gatgctagca ctccgttccg
      541 tccggccagg gagccgcatg cgcctgcgtt ccgccctcgt ggtgccgttg ctgttgttcg
      601 ccggcggcgc cggcgcgcag ctgctgccgg ccggccccgc gctgccgcaa ctgccgggcc
      661 gcctcgtcgg cgccacgctg cagcgcacgc tcgacgatcc cgcgttgcgc gcgccgctgt
      721 cggccctgcg ccgcctgcgc atcgatacgc tgctgcacga ccagcgccgg cgcgtcgacc
      781 tcgacggcca cggcgaaccc gtgctgcgcg gcgagttcct gctgctgggc ggcgacgccg
      841 ccaccctggc ggcggtgcag gccgtgggct tcaccgcgac ccggcgcgac gacggcgagg
      901 ggctcgggct cgacctcttc gtgctgcgcg acacgcgcga ccgcagcgcg atccgggcga
      961 tgctcgaact gcaacaggcc gcgccgcagg cggcgttcgc cttccagcac ctgtacctgc
     1021 cggcgggcgc ggcgggcgcg cgcgccgcgc cggacgaggc gaaagccgcc ggcgacgccg
     1081 cgtcgccgct gcgcatcggg ctgatcgacg gcggcgtcga cgcgcgcgac cccgcgttcg
     1141 cgggcctccg actggaacgc cacggctgcg caggcgcggc ggcggccgac ccgcatgcca
     1201 ccgccgtcgc cgagcgcctc gccggccatg cccgcggcgt gctgtacgcc gccgacctgt
     1261 ggtgcggcga tccggtcggg cgcgcgacgc tcggcctggt cgatgcgctg gcgtggatgg
     1321 cgcgcgaacg ggtgccggtg gtcaacatca gcctggtcgg ccccgacaat ccggtgctcg
     1381 cgcgcgcgat cgcggcgctg gtcgcgcgcg ggcacgtggt ggtcgcggcg gtcggcaacg
     1441 acggcccggc ggcgccgccg ctgtatccgg cgagctatcc gggggtgatc ggcgtcagcg
     1501 gcgtcgacgc gaagctgcgc gcgctgcccg aggcggcgag cggagcgcag gtggacttcg
     1561 ccgcgtcggg catcgacggc gatggccggc atgcgctgcg cgggacgtcg ttcgccgcgc
     1621 cggtggtggc gcgcctggcg gccctgcgcg tgcacgcgcc gacacccggc gccggcgcgc
     1681 a
//
LOCUS       DATIQC010000112         4949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_254848, whole genome shotgun sequence.
ACCESSION   DATIQC010000112 DATIQC010000000
VERSION     DATIQC010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4949
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254848"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VLM17_02385"
     CDS             <1..219
                     /locus_tag="VLM17_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005988263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR64439.1"
                     /translation="AREVLGAFAGAPPEESTGGGTSDARFIAPLGAQCIEVGPVNASI
                     HKVDEHVAVADLERLPDLYLALIERLLG"
     gene            complement(284..2725)
                     /locus_tag="VLM17_02390"
     CDS             complement(284..2725)
                     /locus_tag="VLM17_02390"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HSR64440.1"
                     /translation="MPVWSKRAALVLLLLVLAAGLAGWWLVRASVPRLDGDQAVPGLR
                     AAASVRRDALGAVTIDAASEADAMRALGWVHAQERFFEMDLMRRTAAGELAELFGPAA
                     LELDRQHRAHRLRARAAADFAAFAGDDRDALQAYVDGVNAGLGALRARPWPYLLLRAL
                     PRAWAQADSALVGDAMYFDLQEAGTQNQRKLMKLRGASPPALYALLARDGTAWDAPLL
                     GSARGEAVLQGAAALDLRRLPQPAHARALALREAPARDIGSNNFAVAGPLTRDGRAIL
                     ADDMHLGLRAPNIWFRVRLRYPDAGAPGGRVDVVGLSLPGLPGVIVGSNGHVAWGFTN
                     SYVETSGWRVVHPCARAGQTACTPVHATRETIRVAGAAPATLDVEDTDWGPILDHAGD
                     GSPLALRWAAQLPGALNLGIGAFARAGDVRALLAAADRTAIPTQNLVAVDSAGHVAWR
                     WLGPLPVRAAGCAPRAARLQAAATRTEGTAASCPPWSLATDQAPALVDPPSGRLWTAN
                     ARVVDGGLLARAGDGGYALGARAKQIRDDLFARRRFAERDLLAIQLDDRALFLQRWWR
                     LLQGEAATARTPALQALARASRRWDGRASPDSVSYRIARAWRLAVHARLLDGLTAPAQ
                     AALGDGFEMPDLPQFEGVAWPLVTRRPSNLLPRRYSCESLAKAARTSMCGDPNGWDAL
                     FEDAAAQVRDDLARDGPLAGRSWGERNTARICHPLARALPAFVKPLLCMPADALAGDS
                     NMPRVTAPDFGASERLVVAPGHEADGILHMPGGQSGHPLSPYWGAGHEDWVHGRATPL
                     LPGPAQHTLRLLPSR"
     gene            complement(2780..3250)
                     /locus_tag="VLM17_02395"
     CDS             complement(2780..3250)
                     /locus_tag="VLM17_02395"
                     /inference="COORDINATES: protein motif:HMM:NF025698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4395 domain-containing protein"
                     /protein_id="HSR64441.1"
                     /translation="MAASPTLRRRIEAQGFRGLDDARLARIGPWLRWSPALCTLGMVA
                     GVALESAPLLWSLAGVAFLGALLRFHPFDLLYNHGLRHVTGTGRLPHQGPQRRFACGV
                     ASAWLLATGLAFALGETTIGYLLGIPLIAVAGLVSVTNICIPSMVYNRMFERPW"
     gene            3344..4597
                     /locus_tag="VLM17_02400"
     CDS             3344..4597
                     /locus_tag="VLM17_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR64442.1"
                     /translation="MEKHAPRLGLRENLPQFALLVLVNAFVGAMVGLERTILPPLAEQ
                     AFHLAAKTAVLSFIVVFGLAKALTNYLAGRWSDRFGRKHVLVAGWLVATPVPFLLMWA
                     PDWSWVLAANALLGVSQGLTWSTTVIMKVDLVGPRRRGLAMGLNEFAGYVAVAASAFL
                     TGVLAARYGLRPEPFYPGVAFVGIGLLLSAACVRDTRAHAQLESRLHGAPAHAGAVDP
                     REIFWRTSVGDRDLSSISQAGLVNNLNDGMAWGLFPLVFAAAGMGLSQVGTLAAIYPA
                     TWGLAQLATGAWSDRVGRKWLIACGMWLQAAGIAGVALANGFAGFAAGAVALGLGTAM
                     VYPTLLAAIGDVAHPQWRASAVGVYRLWRDLGYAVGALLAGLVADALGPAAALWTVAA
                     LTFASGALVAVRMRETLPGPAGRGR"
     gene            complement(4697..>4949)
                     /locus_tag="VLM17_02405"
     CDS             complement(4697..>4949)
                     /locus_tag="VLM17_02405"
                     /EC_number="5.99.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467192.1"
                     /note="decatenates newly replicated chromosomal DNA and
                     relaxes positive and negative DNA supercoiling; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HSR64443.1"
                     /translation="LSELPELDKGKGNKLIDIPKAKLGTERVVAVAVVAPGASLAVKS
                     GNRTMTLSFKDLDAYVGARATRGGLLPRGWQKVDGLAVE"
BASE COUNT          636 a         1796 c         1868 g          649 t
ORIGIN      
        1 gcacgcgagg tgctcggcgc ctttgcgggt gcgccgccgg aagaaagcac cggcggcggc
       61 acgtccgatg cgcgcttcat cgcgccgctc ggcgcgcagt gcatcgaagt gggaccggtc
      121 aacgccagca tccacaaggt cgacgagcat gtggcggtgg ccgacctcga acgcctgccc
      181 gacctgtatc tcgcgctgat cgagcgcctg ctgggctagt cctccggtcg gacggcccgg
      241 cgcgccgcgg cgcctgcgcg tgggagcgct cccgcaatgg gcttcagcgg gaaggaagca
      301 ggcgcagcgt gtgctgcgcg ggaccgggca gcagcggcgt cgcgcggccg tgcacccagt
      361 cctcgtggcc ggcgccccag tagggcgaca gcggatggcc gctctggccg ccgggcatgt
      421 gcaggatccc gtcggcctcg tggccgggcg cgaccaccag ccgttccgac gcgccgaaat
      481 ccggcgccgt cacccgcggc atgttgctgt cgccggcgag ggcatcggcc ggcatgcaca
      541 gcagcggctt cacgaacgcg ggcagggcgc gcgcgagtgg atggcagatg cgcgcggtgt
      601 tgcgctcgcc ccagctgcgc ccggcgagcg gaccgtccct ggcgaggtcg tcgcgcacct
      661 gcgcggcggc gtcctcgaac agcgcatccc atccgttcgg atccccgcac atggatgtgc
      721 gggcggcctt cgcgagggat tcgcatgaat agcggcgcgg cagcaggttc gacgggcgcc
      781 gcgtcaccag cggccaggcc acgccttcga actgcggcag gtccggcatt tcgaagccgt
      841 cgccgagcgc ggcctgggcc ggcgcggtga gcccgtcgag caggcgcgcg tggaccgcga
      901 ggcgccaggc gcgcgcgatg cggtagctga ccgaatccgg gcttgcgcgg ccgtcccagc
      961 gccgcgaggc gcgggcgagc gcctgcagcg cgggcgtgcg tgccgtcgcc gcctccccct
     1021 gcagcagtcg ccaccagcgc tgcaggaaca gcgcgcggtc gtcgagctgg atcgcgagca
     1081 ggtcgcgctc ggcgaaccgg cggcgagcga acaggtcgtc gcggatctgc ttcgcgcggg
     1141 ccccgagcgc gtagccgccg tcgccggcac gggcgagcag cccgccgtcg acgacgcgcg
     1201 cgttggcggt ccacaggcgg ccggagggcg gatcgaccag cgccggcgcc tggtcggtcg
     1261 ccagcgacca cggcggacac gacgctgcgg tgccttccgt ccgcgtggcg gcggcctgca
     1321 accgcgcggc ccgcggggcg cagccggccg cgcgcaccgg cagcgggccg agccagcgcc
     1381 aggccacatg gccggcgctg tcgacggcga ccaggttctg ggtcgggatc gcggtgcggt
     1441 cggctgcggc gagcagggcg cgcacgtcgc cggccctggc gaatgcgccg atgccgaggt
     1501 tgagcgcgcc cggaagctgc gcggcccagc gcagggccaa cgggctgccg tcgccggcgt
     1561 ggtcgaggat cggcccccag tcggtgtcct cgacgtccag cgtcgcgggc gcggcgccgg
     1621 ccacgcggat ggtctcgcgg gtcgcgtgca ccggcgtgca cgccgtctgg ccggcgcgcg
     1681 cgcagggatg cacgacgcgc cagccggacg tctccacgta gctgttggtg aatccccagg
     1741 cgacgtggcc gttgctgccg acgatgaccc cgggcagccc cggcaggctg agcccgacga
     1801 catccacgcg cccaccgggc gcgcccgcat cgggatagcg caggcgcacg cggaaccaga
     1861 tgttcggcgc acgcaggccg aggtgcatgt cgtcggccag gatcgcgcgg ccgtcgcggg
     1921 tgagcggacc ggcgaccgcg aagttgttgc tgccgatgtc gcgcgcgggc gcttcgcgca
     1981 gcgccagcgc gcgggcatgc gcgggttgcg gcaggcggcg caggtcgagg gccgcggcac
     2041 cctgcagcac ggcctcgccg cgggcgctgc ccagcagcgg tgcgtcccac gcggtgccgt
     2101 cgcgggccag cagcgcgtac agcgcgggcg ggctcgcgcc gcgcagtttc atcagcttgc
     2161 gctggttctg cgtgccggcc tcctgcaggt cgaagtacat cgcatcgccg accagcgccg
     2221 aatcggcctg cgcccacgcg cgcggcagcg cgcgcagcag caggtagggc cagggccgcg
     2281 cgcgcaacgc cccgagtccg gcgttgacgc cgtcgacata ggcctgcagc gcatcgcggt
     2341 cgtcgccggc gaaggcggcg aaatcggccg ccgctcgggc gcgcaggcgg tgcgcgcggt
     2401 gctggcggtc gagttcgagc gcggccggcc cgaacagctc ggccagttcg ccggcggcgg
     2461 tgcgccgcat caggtccatc tcgaagaagc gctcctgcgc gtgcacccag ccgagcgcgc
     2521 gcatcgcgtc cgcctcgctg gcggcgtcga tggtgaccgc gccgagcgca tcgcgccgca
     2581 cgctggccgc cgcgcgcagc cccggcaccg cctggtcgcc atcgagccgc ggcacgctcg
     2641 cgcgcaccag ccaccagccc gcgaggccgg ccgccagcac gagcaacagc agcaccagcg
     2701 cggcgcgctt cgaccagacg ggcatgacgt cccctgcggc ggatgccggc gagcataccc
     2761 gttggatccg ccgaggccgc taccaggggc gctcgaacat ccggttgtag accatcgacg
     2821 ggatgcagat gttggtcacg ctgaccaggc cggctaccgc gatcagcggg atgccgagca
     2881 ggtagccgat ggtcgtttcg cccagggcga atgccaggcc ggtcgccagc agccatgcgc
     2941 tggccacgcc gcaggcgaac cgtcgctgcg gaccctggtg cggcagccgg ccggtgccgg
     3001 tcacgtggcg cagcccgtgg ttgtagagga ggtcgaaagg atggaaccgc agcagcgcgc
     3061 ccaggaacgc cacgcccgcg aggctccaga gcagcggcgc cgattccagg gccacgccgg
     3121 cgaccatgcc gagggtgcac agcgcggggg accagcgcag ccagggtccg atccgtgcga
     3181 ggcgcgcatc gtcgaggcca cggaaaccct gtgcctcgat ccggcgacgg agggtcggac
     3241 tggcggccat gcgcacctcc gcgggcgcgg tctcctagac tgggaaaaac ggcagccggc
     3301 gaggcgtcgg gtcatcgccg ccttcgggct ggagggtcgg agagtggaaa agcacgcgcc
     3361 ccgcctcggg ctgcgggaga acctcccgca attcgcattg ctggtgctgg tcaacgcgtt
     3421 cgtcggtgcg atggtggggc tcgagcgcac gatcctgccg ccgctcgccg agcaggcgtt
     3481 ccacctcgcc gcgaagacgg ccgtgctgtc gttcatcgtc gtgttcgggc tggcgaaggc
     3541 gctgaccaac tacctcgccg gccggtggtc ggaccgcttc ggccgcaagc acgtgctcgt
     3601 cgctggatgg ctggtcgcca cgccggtgcc gttcctgctg atgtgggcgc cggactggtc
     3661 gtgggtgctc gccgccaatg cactgctcgg cgtgagccag gggctgacct ggtcgacgac
     3721 ggtgatcatg aaggtcgacc tcgtcggccc gcggcggcgc ggcctggcga tgggactcaa
     3781 cgaattcgcc ggctacgtcg ccgtcgccgc cagtgcattc ctgaccggag tgctcgccgc
     3841 gcgctacggg ttgcgtcccg agcccttcta tccgggcgtc gcgttcgtcg ggatcggcct
     3901 gctgctctcc gcggcgtgcg tgcgcgacac gcgtgcccac gcgcagctcg aatcgcgcct
     3961 gcacggcgcg ccggcgcatg caggagcggt cgacccgcgc gagatcttct ggcgcacgag
     4021 cgtgggcgac cgcgacctgt ccagcatcag ccaggccggg ctcgtcaaca acctcaacga
     4081 cggcatggcg tggggcctgt ttccgctggt cttcgcggcc gcgggcatgg gcctgtcgca
     4141 ggtcgggacg ctggccgcga tctatcccgc gacctggggc ctggcccagc tggccaccgg
     4201 cgcctggtcc gatcgcgtcg gcaggaagtg gctgatcgcc tgcggcatgt ggctgcaggc
     4261 ggcgggcatc gccggtgtcg cgctggcgaa cgggttcgcg ggcttcgccg cgggcgcggt
     4321 cgcgctcggc ctggggaccg cgatggtgta cccgacgctg ctcgcggcga tcggcgatgt
     4381 cgcgcacccg caatggcgcg cgtcggccgt gggcgtctac cggttgtggc gcgacctcgg
     4441 ctacgcggtc ggcgcattgc tcgccggcct cgtcgccgat gccctcggtc cggccgccgc
     4501 cctgtggacg gtggccgcac tcacgttcgc ctcgggcgcg ctggtggcgg tgcgcatgcg
     4561 ggaaacgctg ccggggccgg ccggccgcgg tcgttagccc aggtggtccc attcgaacgc
     4621 gcgtccgcta cgcctcgaaa ggcgtcacgc gcgacggcgt ggatcgcgcc gccacgcgct
     4681 gccccacgcg ccgccgctac tccaccgcca gcccgtcgac cttctgccac ccgcgcggca
     4741 acaagccgcc acgcgtcgcg cgcgcgccga cataggcgtc gaggtccttg aacgacagcg
     4801 tcatcgtgcg gttgccggac ttcaccgcca gcgaagcacc cggcgccacc accgcaaccg
     4861 cgaccacgcg ttcggtgccg agcttggcct tcgggatgtc gatcagcttg ttgcccttgc
     4921 ccttgtcgag ttccggcagt tccgacaac
//
LOCUS       DATIQC010000113         4626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_360717, whole genome shotgun sequence.
ACCESSION   DATIQC010000113 DATIQC010000000
VERSION     DATIQC010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360717"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..599
                     /locus_tag="VLM17_02410"
     CDS             <1..599
                     /locus_tag="VLM17_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSR64444.1"
                     /translation="CALLLAAGWSAGAQAGSIVIYRCTDAFGRLTVQNDVPCPKGSRQ
                     RKQVVDPPPPMPAYRPAPPSPAPAPPLVEAPAATLPPSAPATPLPPPPLFRCRTAGDD
                     SHFGEDETPAPRCLALPVVGLDGSPSAAGTACQMVRDTCERIPDGDACEAWRQYAREA
                     EAAWRFGRAEDGAKHEADFERIQRLLRESTCAQAGPAP"
     gene            complement(601..831)
                     /locus_tag="VLM17_02415"
     CDS             complement(601..831)
                     /locus_tag="VLM17_02415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64445.1"
                     /translation="MAASPRSWFRRLGWVHAPCSAIGWLVLLAALAFCADVFVAIDRH
                     AHSASDTLYGVFPYWACAFLLYEWIATRSARD"
     gene            complement(838..1614)
                     /locus_tag="VLM17_02420"
     CDS             complement(838..1614)
                     /locus_tag="VLM17_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR64446.1"
                     /translation="MERSRWRLDGRLALVTGGSAGIGRAIARELLGFGADVLLAARNA
                     APLESVREELAEEFPERAVSTFVADVAVDEQRRELLDWVEDFGEGLHVLVNNAGGNLT
                     RAATDYTEDEWRQVFEINLFSAFELSRYAHPLLTKHAASSIVNVGSVSGITHVRSGAP
                     YGMSKAAMHQMTRNLAVEWAEDGVRVNAVAPWYIRTRRTHDKLADPDYLDEVLLRTPM
                     GRVGEPEEVAAAVAFLCLPAASYVTGECIAVDGGFLRYGF"
     gene            1686..1934
                     /locus_tag="VLM17_02425"
     CDS             1686..1934
                     /locus_tag="VLM17_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009606088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64447.1"
                     /translation="MNAKHLLAVLPLSLALAACSKPTPPDKDQPPEPKATALRDAIQA
                     PINKAKAAEPQVLDAAKQQAADIDAQASGESSQPAPGN"
     gene            complement(1996..3879)
                     /gene="sppA"
                     /locus_tag="VLM17_02430"
     CDS             complement(1996..3879)
                     /gene="sppA"
                     /locus_tag="VLM17_02430"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HSR64448.1"
                     /translation="MNASSRGPIARFFVGLWHAMNFTRMLVFNLLFFGLLFLVLAALA
                     AGGGARPLMERTTLVVAPEGKLVEQYSTDPITRAFARASGDEKAGEVQLRDLLRALDA
                     AKDDKRIERVLLRTDRMAFSGYASMREVAAALAKLRASGKQVVAFGENFDQQQYLLAA
                     QASEVYLDPMGGLLLEGLGRYRQYYRQGLQDKLGVDVHLFRVGEYKSAAEPYVLDAAS
                     PAAKEADLYWMNDIWQRFLADIAGARRLSPQQLTTDIDSLPQGIEAAGGDLARYALQH
                     KLVDGLKTEEDVDDLLARRGVADDGADDGFREVSLDDYLKHIDSTLSRVDERPQVAVV
                     VAEGEIAGGKQPPGSIGGESTAELLRSARDDDQVKAVVLRVDSPGGEVFASEQIRREV
                     AALKDAGKPVVISMGDLAASGGYWISMNGDRIYADPSTITGSIGIFGVFPTVQRGLDK
                     IGVHTDGVGTTRFAGAFDITRPLDPEIGQVVQSVIDKGYRDFTGRVAQARHQSVQAID
                     AIARGRVWSGAQARERGLVDQFGGLEDAVADAASRAKLGKPRAWQVRYLERPATPFER
                     FFSHLAGTRLGSAWLRESSLGPLLLARALPRTQDDLEFLDAALHPRPGAPVTALAHCF
                     CGL"
     gene            complement(3976..>4626)
                     /locus_tag="VLM17_02435"
     CDS             complement(3976..>4626)
                     /locus_tag="VLM17_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSR64449.1"
                     /translation="RWAPIRSLLGNGLPIGVTVAMAGSLFIVTALLIGRLGTVPVAAH
                     QIAINVASLCFMIPLGLAEATTVRVGHARGRGSSEGLRRAAFAGYALVLCTQALSALV
                     LFAGHDLVVRLYTRDAAVAALAASLLLYAAAFQFPDGIQVLSAGALRGLKDTRVPMFL
                     AAFAYWGVGMPLGAGLGIGLGWGPRGMWIGLIAGLACAALLLGRRFLHSSRRPLRM"
BASE COUNT          677 a         1712 c         1646 g          591 t
ORIGIN      
        1 gttgcgccct gctgctggct gcgggctgga gcgccggcgc gcaggccggc agcatcgtca
       61 tctaccgctg taccgacgcc ttcggccgcc tgaccgtgca gaacgacgtg ccctgcccca
      121 agggaagccg gcagcggaag caggtggtcg acccgccgcc gccgatgccg gcgtaccggc
      181 cggcgccgcc gtcgcccgcg cccgcgcccc cgctggtgga agcgccggcc gccaccctcc
      241 cgccgtccgc gccggcgacg ccactgccgc cgcccccgct gttccgttgc cgcacggccg
      301 gcgacgacag ccatttcggc gaggacgaga cgcccgcgcc gcgctgcctg gcgctgccgg
      361 tggtgggcct cgacggcagc ccgagcgccg ccgggaccgc ctgccagatg gtccgcgaca
      421 cctgcgagcg catccccgat ggcgacgcct gcgaggcgtg gcggcaatac gcgcgcgaag
      481 ccgaggcggc gtggcgtttc ggccgcgccg aggacggcgc caagcacgaa gcggatttcg
      541 agcgcatcca gcgcctgctc cgcgaaagca cctgtgcgca ggccgggccc gcgccgtgac
      601 tcaatcgcgc gcgctgcgcg tggcgatcca ctcgtacagc aggaacgcgc acgcccagta
      661 ggggaacacc ccgtacagcg tgtcgctggc cgaatgcgcg tgccggtcga tcgccacgaa
      721 cacgtccgcg cagaacgcca gcgcggcgag caggaccagc cagccgatcg cgctgcatgg
      781 cgcgtgcacc cagcccaggc gccggaacca gcttcgcgga gaggcggcca tcgccgctca
      841 gaaaccgtag cgcaggaacc cgccgtccac ggcgatgcat tcgccggtga cgtagctcgc
      901 cgcgggcagg cacaggaacg cgaccgccgc cgccacttcc tcgggctcgc cgacgcggcc
      961 catcggcgtg cgcagcagta cctcgtcgag gtagtcgggg tcggccagct tgtcgtgcgt
     1021 gcggcgggtg cggatgtacc acggcgccac ggcgttcacg cgcacgccat cctcggccca
     1081 ttcgaccgcg aggttgcgcg tcatctggtg catcgccgcc ttgctcatgc catagggcgc
     1141 gccactgcgc acgtgggtga tgccggacac gctaccgacg ttgacgatgc tcgacgccgc
     1201 atgcttcgtc agcaaagggt gcgcatagcg cgacagctcg aatgcggaga acaggttgat
     1261 ctcgaacacc tgccgccatt cgtcctcggt gtagtcggtc gccgcgcggg tgaggttgcc
     1321 gccggcgttg ttgaccagca cgtgcaggcc ctcgccgaag tcctcgaccc agtcgagcag
     1381 ctcgcggcgc tgttcgtcga cggcgacgtc ggcgacgaag gtggacaccg cgcgctcggg
     1441 gaattcctcc gcgagctcct cgcgcaccga ctccagcgga gcggcgttgc gggcggcgag
     1501 cagcacgtcg gcgccgaagc cgagcagttc gcgcgcgatc gcgcggccga tcccggcgct
     1561 gccgcccgtg accagggcca gtcgtccgtc gagccgccag cggctgcgtt ccattgccat
     1621 gtcctcgccc ggcacgggcc cgtgaagccc ggcgtaggat agcgggtcgc ccgcggagtc
     1681 caccgatgaa cgccaagcac ctgctcgccg tcctgccgtt gtcgctcgcg ctcgccgcgt
     1741 gcagcaagcc caccccgccc gacaaggacc agccgccgga gccgaaggcg accgcgctgc
     1801 gcgacgcgat ccaggccccg atcaacaagg cgaaggcggc cgagccgcag gtgctggacg
     1861 cggcgaaaca gcaggccgcg gacatcgacg cgcaggccag cggcgaaagc agccagcccg
     1921 cgcccggcaa ctgaggcgcg cgcccggccg gttcgcggca gcgccgcgct ccggcgcctc
     1981 ccggcgtgcg tcgcgctaca acccgcagaa gcagtgcgcc agcgccgtca ccggcgcccc
     2041 ggggcgcggg tgcagcgcgg catcgaggaa ctccaggtcg tcctgcgtgc gtggcagcgc
     2101 gcgcgcgagc agcagcgggc ccaggctcga ttcgcgcagc caggcgctgc cgagccgggt
     2161 gccggcgagg tggctgaaga agcgctcgaa cggcgtcgcc ggccgctcga ggtagcgcac
     2221 ctgccacgcg cggggcttgc cgagcttcgc gcgcgaggcg gcgtcggcga ccgcatcctc
     2281 cagcccgccg aactggtcga ccagcccgcg ctccctggcc tgggcgccgc tccacacgcg
     2341 tccgcgcgcg atcgcgtcga tcgcctgcac gctctggtgg cgcgcctgcg ccacccgccc
     2401 ggtgaagtcg cggtagccct tgtcgatcac cgactgcacc acctggccga tttccggatc
     2461 gagcgggcgc gtgatgtcga acgcgccggc gaagcgcgtg gtgccgacgc catcggtgtg
     2521 cacgccgatc ttgtcgagtc cgcgctgcac cgtcgggaac acgccgaaga tgccgatcga
     2581 gccggtgatc gtggacgggt cggcgtagat gcggtcgccg ttcatgctga tccagtagcc
     2641 acccgacgcg gcgagatcgc ccatcgagat gacgaccggc ttgccggcgt ccttcagcgc
     2701 ggccacctcg cggcggatct gctcggaggc gaagacctcg ccgccgggcg aatcgacgcg
     2761 cagcaccacc gccttgacct ggtcgtcgtc gcgcgccgag cgcagcagtt cggcggtgga
     2821 ttcgccgccg atcgagcccg gcggctgctt gccgccggcg atctcgccct cggccaccac
     2881 caccgcgacc tgcggccgct cgtccacccg cgagagcgtg ctgtcgatgt gcttgaggta
     2941 atcgtccagg ctcacctcgc ggaatccgtc gtcggcgccg tcgtcggcga cgccgcgcct
     3001 ggccagcagg tcgtcgacgt cctcctcggt cttcagtcca tcgaccagct tgtgctgcaa
     3061 cgcgtaacgc gcgaggtcgc cgccggcggc ctcgatgccc tgcggcaggc tgtcgatgtc
     3121 ggtcgtcagc tgctgcggcg acagccggcg cgcgccggcg atgtcggcga ggaagcgctg
     3181 ccagatgtcg ttcatccagt agaggtcggc ctccttcgcg gcgggcgagg cggcgtcgag
     3241 gacgtagggt tcggccgccg acttgtattc gccgacgcgg aacaggtgca cgtcgacgcc
     3301 gagcttgtcc tgcaggccct ggcggtagta ctgccgatag cggccgaggc cttccagcag
     3361 caggccgccc atcgggtcga ggtagacctc gctggcctgc gcggccagca ggtactgctg
     3421 ctggtcgaag ttctcgccga acgcgacgac ctgcttgccg gacgcgcgaa gcttcgccag
     3481 cgcggcggcg acctcgcgca tcgaggcgta gccggagaac gccatgcggt cggtgcgcag
     3541 cagcacgcgc tcgatgcgct tgtcgtcctt cgccgcgtcg agcgcgcgca gcaggtcgcg
     3601 cagctgcacc tcgccggcct tctcgtcgcc actggccctg gcgaacgcgc gggtgatcgg
     3661 atcggtgctg tactgctcga ccagcttgcc ttccggcgcg accaccaggg tggtgcgttc
     3721 catcagcggg cgcgcgccgc cgccggccgc gagagcggcg aggacgagga acagcagccc
     3781 gaagaacagc aggttgaaca ccagcatgcg ggtgaagttc atcgcgtgcc acaggcccac
     3841 gaagaagcgg gcgatgggac cgcggctgga tgcgttcatg cggatgggct cctggcgaca
     3901 acgcctaggg tacgcggcgg cgcgtggcgg ccgcatgcac cggtggtcat gcccgcttcc
     3961 gccgcgcccg ccgggtcaca tccgcaacgg tcgccggctg ctgtgcagga agcgccggcc
     4021 gagcagcagc gcggcgcagg cgaggccggc gatcaggccg atccacatgc cccgcggccc
     4081 ccacccgagg ccgatcccga ggccggcgcc gagcggcatg cccacgcccc agtaggcgaa
     4141 ggcggcgagg aacatcggaa cgcgggtgtc cttcagcccg cgcagcgcgc ccgccgacag
     4201 cacctggatg ccgtccggaa actggaacgc cgccgcgtac agcagcagcg acgccgccag
     4261 cgcggcgacc gcggcgtcgc gggtgtacag ccgcacgacc aggtcatgcc cggcgaacag
     4321 caccaacgcc gatagcgcct gggtgcacag caccagcgcg tagccggcaa aggcggcgcg
     4381 gcgcaggcct tcgctgctgc cgcggccgcg cgcatggccc acgcgcaccg tggtcgcctc
     4441 ggcgaggccg agcgggatca tgaaacacag gctggcgacg ttgatcgcga tctggtgcgc
     4501 cgccaccggc accgtgccga gccggccgat cagcagcgcg gtgacgatga agaggctgcc
     4561 ggccatcgcc acggtcacgc cgatcggcaa cccgttgccg agcaggctgc ggattggcgc
     4621 ccagcg
//
LOCUS       DATIQC010000114         5080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_42752, whole genome shotgun sequence.
ACCESSION   DATIQC010000114 DATIQC010000000
VERSION     DATIQC010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42752"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(89..646)
                     /gene="sufT"
                     /locus_tag="VLM17_02440"
     CDS             complement(89..646)
                     /gene="sufT"
                     /locus_tag="VLM17_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003488784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative Fe-S cluster assembly protein SufT"
                     /protein_id="HSR64450.1"
                     /translation="MYSRSSEPVRFERDCAAVLVPQGEAVTLPAGSVGYITQALGGSW
                     TVFVEGNLFRIAGTDADAIGKEPPVPIELAAGASDEDVEKLVWKQLRTCFDPEIPINV
                     VDLGLVYEAVVKPHAVQPGQRLVEVRMTLTAPGCGMGDILVDDVRSKLELIPTVAEAD
                     VELVFDPPWNRTMMSEAARLETGML"
     gene            749..1177
                     /locus_tag="VLM17_02445"
     CDS             749..1177
                     /locus_tag="VLM17_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64451.1"
                     /translation="MNETTPAPSTAAANPWLALALLLIGSTGFAAAWVLLAWMRDRQC
                     SWMAVLAAVDAALLLRLAHARPGRVRAAAAVLATAASIVLANWGIVAAQVGRPMGLLP
                     WESMAKLGPALAWTLATLANHPADLAWLWIALVVAFLAGR"
     gene            1243..1755
                     /locus_tag="VLM17_02450"
     CDS             1243..1755
                     /locus_tag="VLM17_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64452.1"
                     /translation="MHARPAASINWRWVLMGGLALATLDALFATGYWRLTAGVPWTRV
                     FQTVAAGVLGLEASVAGGIRTAWLGVGLHYLIAMAFVVAYTLAALRVGALRRHPLASG
                     LGYGLLLYATMNLVVIPLSAIGHLPKFDNLPWVAASIAMHAVFGLICAGAALRALAPL
                     SARLPAPSAR"
     gene            complement(1721..3145)
                     /locus_tag="VLM17_02455"
     CDS             complement(1721..3145)
                     /locus_tag="VLM17_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HSR64453.1"
                     /translation="MTASWPVLAASTSYFLAATLFLLGLQRMASPVTARSGIQWAGAG
                     MLLATAATFLLPGLHNLALMVLALALGTAGAWVWGKKVAITDMPQMVELFNGMGGGSA
                     AAIGAVELWRSIGSDVRPSPVHATLAAVGALIGAVSLTGSIIAWAKLDGRMDKRYTFP
                     AQQAFNALVFVAAIAFGAVAVWGLVAGGLEARQLTGVAVLAFFVAALALGVLMTLPIG
                     GADMPVVISLYNAFTGLAVAFEGYVLGNEALIIAGTMVGAAGMLLTRLMAKAMNRPIR
                     NVLFGSFGGGGAAQEITGSQKPIEAGDVAAMMAFAERVVIVPGYGMAVAQAQHKIWEL
                     AQRLIARGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFPNTDVSLV
                     VGANDVVNPVAKTDPASPIYGMPILDVVNSKHTVVIKRGKGTGFAGIENALFYADNTR
                     MLYGDGAEMASALVSELKALEGGH"
     gene            complement(3142..3441)
                     /locus_tag="VLM17_02460"
     CDS             complement(3142..3441)
                     /locus_tag="VLM17_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P) transhydrogenase subunit alpha"
                     /protein_id="HSR64454.1"
                     /translation="MGDGLVALYIFMLAAIAGHVIIARVPVILHTPLMSGSNFIHGIV
                     LIGAMVVLGHAETPLEQAVGFVAVLLGAGNAAGGYVVTERMLEMFKSSRAAGGRK"
     gene            3568..3969
                     /locus_tag="VLM17_02465"
     CDS             3568..3969
                     /locus_tag="VLM17_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64455.1"
                     /translation="MKTWFGMAVGIGLLAAAGGALAQDRGDRVEHRFDAKGDRIEQRL
                     DSHGQRIDQRLDASGDRIDARFDQRADRARANGHDRRAAHLEQRGDRIDRRLDARGDR
                     IASRLDARGDRIDRRLDREGERYDRRWDRRH"
     gene            3984..4562
                     /locus_tag="VLM17_02470"
     CDS             3984..4562
                     /locus_tag="VLM17_02470"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HSR64456.1"
                     /translation="MLERVDADVDEACEDATTADAAAPTLDAFLAGIGARAFRFAELA
                     LRQREDALDAVQDAMARMLAYRRRPATEWPPLFWRILRTRVVDLQRRRTFRLRWLLPA
                     DDAQPDWNEHAPDRDGLDPSRAHDQREAWTRIAGALTALPRRQREAFTLRVLEELDVA
                     TTAQVMGCGEGSVKTHLSRARDSLQKQLEDWR"
     gene            4559..4900
                     /locus_tag="VLM17_02475"
     CDS             4559..4900
                     /locus_tag="VLM17_02475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64457.1"
                     /translation="MNDHDALDARVRAAHADSLAQLSPRVRAQLARRSRLAMAAKPAP
                     GTRPALGWALAALAACAVVVGVFHPASQVARSPAPALATTTTAAPDTLDDNPDFYLWL
                     ASRDADSLASE"
BASE COUNT          704 a         1875 c         1769 g          732 t
ORIGIN      
        1 ctgggatccg ctcaaggtgc gcaagaacgt cgccgccaac cgcttcgagg cgctctgagc
       61 ccggagcgcg gcccgtggga cccgcttctc agagcatgcc ggtctcgagc cgcgcggctt
      121 ccgacatcat cgtgcggttc cacggcgggt cgaacaccag ctcgacgtcc gcttcggcga
      181 cggtcgggat cagctccagc ttgctgcgca cgtcgtcgac caggatgtcg cccatgccgc
      241 aacccggcgc ggtcagggtc atgcgcacct cgaccaggcg ctggcccggt tgcacggcat
      301 gcggtttcac gacggcctcg tagaccaggc cgaggtcgac gacgttgatc gggatttccg
      361 ggtcgaaaca ggtccgcagc tgtttccaca ccagcttctc gacgtcctcg tcggaggccc
      421 cggccgccag ttcgatcggc accggcggct ccttgccgat ggcgtcggcg tcggtgccgg
      481 cgatgcggaa caggttgcct tcgacgaaca ccgtccagct gccaccgagc gcctgggtga
      541 tgtagccgac gctgccggcg ggcagggtca cggcttcgcc ctgcggcacc agcacggcgg
      601 cgcagtcgcg ctcgaagcgc acgggttcac tgctgcggga atacatgctc atggtgggta
      661 ttgcgcggga aacctcgcgt cgcgccattc taccgcccgc gtgcggctat gctgtcgggc
      721 ccgcgcaccg gcgcgtcgcg ccgctggaat gaacgagacg acccctgctc cctccacggc
      781 cgcggccaac ccgtggctgg cccttgcgct gctgctgatc ggcagcaccg gcttcgccgc
      841 ggcctgggtg ctgctggcgt ggatgcgcga tcgccagtgc agctggatgg cggtgctggc
      901 ggcggtcgac gcagcgttgc tgctgcgcct ggcccacgcg cggccggggc gggtccgcgc
      961 ggcggcggcg gtgctggcga cggctgcgtc gatcgtcctc gccaactggg gcatcgttgc
     1021 cgcgcaggtg ggccggccga tgggcctgct gccatgggag tcgatggcca agctcggccc
     1081 ggcgctggcg tggacgctgg cgacgctcgc caaccatccg gcggacctcg cgtggctgtg
     1141 gatcgcgctg gtggtggcct tcctggcagg ccgctagcga tccgccaagc gcggtcaacc
     1201 cgcgcgcgga cggcgcgggc acgctggcgg caggaggccc gcatgcacgc tcgacccgct
     1261 gcttcgatca actggcgctg ggtgctcatg ggcggcctcg cactcgccac gctggatgcg
     1321 ctgttcgcga ccggctactg gcgcctgacg gccggcgtgc cgtggacgcg ggtgttccag
     1381 accgttgccg ccggggtgct cgggctggag gcgagcgtgg ccggaggcat ccgcacggcc
     1441 tggctgggcg tcgggctgca ttacctcatc gcgatggcct tcgtggtcgc ctacacgctg
     1501 gcggcgctcc gtgtcggcgc gctgcgccgt cacccgctcg cgagcgggct cggctacggg
     1561 ttgctgctct acgcgacgat gaacctggtg gtgatcccgc tgtcggcgat cggccacctg
     1621 ccgaagttcg acaacctgcc atgggtggcg gccagcatcg ccatgcacgc ggtgttcggg
     1681 ctgatctgcg cgggcgccgc gctgcgcgcg ctcgcgccgc tcagtgcccg ccttccagcg
     1741 ccttcagctc gctgaccagc gcgctcgcca tttccgcgcc atcgccatac agcatgcggg
     1801 tgttgtcggc gtagaacagc gcgttctcga tgcccgcgaa gccggtgccc ttgccgcgct
     1861 tgatcaccac cgtgtgcttc gagttgacga catcgaggat cggcatgcca tagatcggag
     1921 aggccgggtc ggtcttcgcc accgggttga cgacgtcgtt cgcaccgacc accagcgaca
     1981 cgtcggtgtt cgggaactcg gggttgatgt cgtccatgtc ggcgatcagg tcgtagggga
     2041 cgcccgcctc ggccagcagc acgttcatgt gtcccggcat gcggccggcg accggatgga
     2101 tcgcgaactt caccttgacg ccgcgcgcga tcagccgctg cgcgagttcc cagatcttgt
     2161 gctgcgcctg cgcgaccgcc atgccgtagc cgggcacgat caccacgcgc tcggcgaacg
     2221 ccatcatcgc ggcgacgtcg cccgcctcga tgggcttctg cgatcccgtg atctcctgcg
     2281 ccgcgccgcc accgccgaag ctgccgaaca gcacgttgcg gatcggccgg ttcatcgcct
     2341 tcgccatcag gcgcgtcagc agcatgcccg cagcgccgac catggtgccg gcgatgatca
     2401 gtgcctcgtt gccgagcacg tagccttcga atgcgacggc caggccggtg aacgcgttgt
     2461 acagcgagat cacgaccggc atgtcggcgc cgccgatcgg cagggtcatc agcacgccga
     2521 gcgcgagcgc ggcgacgaag aaggcgagga cggccactcc cgtcagctgc cgtgcctcga
     2581 ggccgcctgc caccaggccc cacaccgcga cggcgccgaa ggcgatcgcg gcgacgaaga
     2641 ccagcgcatt gaacgcctgc tgcgccggga acgtgtagcg cttgtccatg cgcccgtcga
     2701 gcttggccca ggcgatgatc gagccggtga gcgacaccgc gccgatcaat gcgccgaccg
     2761 cggcgagcgt ggcgtgcacc ggactcggcc ggacgtcgct gccgatggac ctccacagtt
     2821 ccaccgcgcc gatcgcggcc gccgaaccgc cgcccatgcc gttgaacagc tcgaccatct
     2881 gcggcatgtc ggtgatcgcg accttctttc cccacaccca cgcgcccgcc gtgcccagcg
     2941 ccagcgcgag caccatcagc gcgaggttgt gcaggcccgg gagcaggaac gtggcggccg
     3001 tcgcgagcag catgcccgcg cccgcccact ggatgccgct gcgcgcggtc accggcgagg
     3061 ccatgcgttg caggccgagc aggaagagcg tcgcggcgag gaagtagctg gtcgaggccg
     3121 ccagcaccgg ccacgacgcg gtcacttcct gcctccggcg gcgcggctcg acttgaacat
     3181 ctcgagcatg cgctcggtca ccacgtaacc gccggcggcg ttgccggcgc ccagcagcac
     3241 ggcgacgaac ccgacggcct gctccagcgg ggtttccgca tggccgagca ccaccatcgc
     3301 accgatcagc acgatgccgt ggatgaagtt cgatcccgac atcagcggcg tgtgcaggat
     3361 caccggcacg cgcgcgatga tcacgtggcc ggcgatcgcc gccagcatga agatgtacag
     3421 cgccaccagc ccgtcgccca tcgtgcgtcc cctcggtcgg ccgttcccat cataacgggc
     3481 cctgaacgcg tcaggcgacg cgtcaaccgc cggcgcgggc acgcgttccc tctcccgcag
     3541 gatcggcctg cgaggaggcg caccggcatg aagacctggt tcgggatggc agtgggcatc
     3601 ggcctgctcg cggccgcggg cggcgcactg gcgcaggatc gcggcgaccg cgtcgaacat
     3661 cgcttcgacg cgaagggcga ccgcatcgaa cagcgcctgg actcccatgg ccagcgcatc
     3721 gaccagcgcc tggacgccag cggcgatcgc atcgatgcac gcttcgacca gcgcgccgat
     3781 cgggcccgcg ccaacggcca cgaccgcagg gccgcacacc tggaacagcg tggcgatcgc
     3841 atcgaccggc ggctggacgc ccggggcgat cgcatcgcct cgcgcctgga tgcccgtggc
     3901 gaccgcatcg accggcggct ggaccgcgag ggcgagcgct acgaccgccg ctgggatcgt
     3961 cggcactgag ccggaggtcc cgtatgctcg aacgcgtgga cgccgatgtc gacgaggcct
     4021 gcgaagacgc caccaccgcg gatgcggcgg cgccgacgct cgatgcgttc ctcgccggca
     4081 tcggcgcgcg tgcgttccgg ttcgccgaac tggccctgcg ccagcgcgag gacgcgctgg
     4141 acgcggtgca ggacgcgatg gcgcgcatgc tcgcctaccg caggcggccg gccacggaat
     4201 ggccgccgct gttctggcgg atcctgcgca cgcgcgtggt cgacctccag cgccggcgca
     4261 cgttccgcct gcgctggttg ctgccggcgg acgatgcgca gcccgactgg aacgagcatg
     4321 cgcccgaccg cgatggtctc gacccctccc gcgcgcacga ccagcgcgag gcgtggaccc
     4381 gcatcgccgg cgcgctgacc gcgctgccgc gccggcagcg cgaggccttc accctgcgcg
     4441 tgctggagga actggacgtg gcgaccaccg cgcaggtgat gggttgcggc gagggatcgg
     4501 tgaagaccca cctgtcgcgc gcccgcgatt ccttgcagaa gcaactggag gactggcgat
     4561 gaacgaccac gatgctctcg acgcgcgcgt gcgcgccgcg cacgcggatt cgctcgccca
     4621 gctgtcgccg cgcgtgcggg cgcagctcgc gcggcggtcc cgcctcgcca tggcggccaa
     4681 gcccgcgccg ggcacgcgac cggccctggg ctgggcactg gcggcgctgg cagcgtgcgc
     4741 ggtggtcgtc ggcgtgttcc acccggcatc gcaggtcgcg cgctccccgg cacccgccct
     4801 cgccacgacc accacggccg cgcccgacac cctcgacgac aaccccgact tctatctctg
     4861 gctcgcctcg cgcgacgccg attcactggc ttcggagtga cgccatgcaa acgatccgcc
     4921 ccgccaccct gctcgtgctc gcgctggtcg ccgtgcccgc gttcgcggcg ccgcccgcgg
     4981 ccccgcccgc gcaacctgcg ccgccggcga cggccaccgc gccggcgatg ccagcctggg
     5041 aacagctcac gcccgcccag cgcgaccagc tggtcgcgcc
//
LOCUS       DATIQC010000115         3192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_396282, whole genome shotgun sequence.
ACCESSION   DATIQC010000115 DATIQC010000000
VERSION     DATIQC010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396282"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /gene="fabD"
                     /locus_tag="VLM17_02480"
     CDS             complement(<1..788)
                     /gene="fabD"
                     /locus_tag="VLM17_02480"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010379023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HSR64458.1"
                     /translation="MTEPSPQLAFVFPGQGSQSPGMLGELAQQHALVRDTFAEASDGA
                     GVDLWTLAQEGPEEQLNRTEFTQPALLAAGVAVWRAWLQQGGVRPAQLAGHSLGEYAA
                     LVAAGALPLADGARLVRLRGQLMQDAAPAGTGAMAAVLGAEDALVEDVCREASADGVV
                     VPANYNSPGQIVIGGHAAAVDRALALLAGRGVRKAVKLAVSVPSHTPLMREAADRLAQ
                     AMGDTAWSAPQLPVVQNVDAQAHGDVAAIRDALVRQLYLPVRWTA"
     gene            complement(897..1874)
                     /locus_tag="VLM17_02485"
     CDS             complement(897..1874)
                     /locus_tag="VLM17_02485"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HSR64459.1"
                     /translation="MTQVFARIAGTGSYLPEKVLTNDDLARFVDTSDEWIAARTGIRE
                     RHVAAEGETTSDLAYHAATRALEAAGVSASELDLVVVGTTTPDLIFPSTACLLQHRLG
                     ADGCPAFDVNAACSGFIYALAVADKFIRSGAARTALVVGAETLTRMLDWSDRGTCVLF
                     GDGAGAVVLKADDETGILSTHLHADGGKKELLWNPVGVSVGFKPDEHNAGVKVLMTGN
                     EVFKHAVKALDAVVEETLEANGLDRHDIDWLIPHQANLRIIEATAKRLDMPMDRVVVT
                     VDKHGNTSSGSVPLALDAAVRSGRVQRGQLLLLEAFGGGFTWGSALLRY"
     gene            complement(2041..2235)
                     /gene="rpmF"
                     /locus_tag="VLM17_02490"
     CDS             complement(2041..2235)
                     /gene="rpmF"
                     /locus_tag="VLM17_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HSR64460.1"
                     /translation="MAVQKSRVSPSRRGQRRSHDALQPKQLATDPTSGETHLRHHVTA
                     DGYYRGKQVIAPKTRVVDEE"
     gene            complement(2285..2809)
                     /locus_tag="VLM17_02495"
     CDS             complement(2285..2809)
                     /locus_tag="VLM17_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceD family protein"
                     /protein_id="HSR64461.1"
                     /translation="MSAHAPESRVPEVLDAWRMVAARRSFEGSLPLASLPRLREALCD
                     PDGQVGYEIGFDHDSLGIPYAELRIAAELPLQCQRSLQRFLLPVELVQRLGLIRDEAD
                     EAALPDGYEPLLVPEDGNLRPAELVEDELILALPVVPLAPGSEPVQEDWSPPQDEAAQ
                     ANPFAALAALKKKD"
     gene            2934..>3192
                     /locus_tag="VLM17_02500"
     CDS             2934..>3192
                     /locus_tag="VLM17_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64462.1"
                     /translation="MASVLALLALAFVVAATLAFGLRRRGGRRQQVLRQVLDAADALE
                     ARLRTARAEIEAIAGDDSNPVQEAMQEMLRQRLWLQQHGDAA"
BASE COUNT          421 a         1153 c         1161 g          457 t
ORIGIN      
        1 gcggtccacc gcaccggcag gtaaagctgg cgcaccagcg cgtcgcggat ggcggcgacg
       61 tctccatgcg cctgcgcgtc gacgttctgc accaccggca gctgcggcgc gctccaggcg
      121 gtatcgccca tcgcctgcgc gagcctgtcg gccgcctcgc gcatcagcgg cgtatgcgac
      181 ggcacgctga ccgcgagctt gaccgccttg cgcacgccgc gcccggcgag cagcgcgagc
      241 gcgcgatcga ccgcggcggc gtgcccgccg atgacgatct ggcccggcga gttgtagttg
      301 gcgggcacga ccacgccgtc ggccgaggct tcgcggcata cgtcttcgac gagcgcgtcc
      361 tcggcgccga gcaccgcggc catcgcgccg gtgccggcgg gcgcggcgtc ctgcatcagc
      421 tggccgcgca ggcgcaccag gcgcgcgcca tcggcgagcg ggagcgcgcc ggccgcgacc
      481 agcgcggcgt attcgccgag gctgtggccg gcgagctgcg ccggccgcac gccgccctgc
      541 tgcaaccacg cgcgccacac cgcgacgccg gcggcgagca gcgcgggctg ggtgaattcg
      601 gtgcggttga gctgctcctc gggaccttcc tgcgccagcg tccacaggtc gacgccggca
      661 ccatcggacg cctcggcgaa ggtgtcgcgc acgagcgcgt gctgctgcgc cagctcgccc
      721 agcatgcccg gcgactgcga gccctggccg gggaacacga aggcgagttg cggtgacggc
      781 tcggtcacgg aagtccctcg aaaaagacgc ggcatgatac ggaccggccg cgtcatgcgt
      841 ctgtactggg ccgtatgcgc gacgccgcgc ggtcgaagcc cggccgcgcg gacggctcag
      901 tagcgaagca gcgccgagcc ccaggtgaag ccgccgccga aggcctccag cagcagcagc
      961 tggccgcgtt gcacgcggcc cgagcgcact gcggcgtcca gcgccagcgg caccgacccg
     1021 gaggaggtgt tgccatgctt gtcgacggtg acgaccacgc ggtccatcgg catgtccagc
     1081 cgcttggcgg tcgcctcgat gatgcgcagg ttggcctggt gggggatcag ccagtcgatg
     1141 tcgtggcggt cgaggccgtt ggcctccagc gtctcctcga ccaccgcgtc gagcgccttg
     1201 accgcgtgct tgaacacctc gttgccggtc atgagcacct tcacgccggc gttgtgctcg
     1261 tccggcttga agccgaccga gacgccgacc ggattccaca gcagctcctt cttgccgccg
     1321 tcggcatgca ggtgggtgct gaggatgccg gtctcgtcgt cggccttgag cacgaccgcg
     1381 ccggcgccgt cgccgaacag cacgcaggtg ccgcgatcgg accagtcgag catgcgggtc
     1441 agcgtttcgg cgccgaccac gagcgcggtc ctggccgcgc ccgagcggat gaacttgtcg
     1501 gccaccgcca gcgcgtagat gaagcccgag caggcggcgt tgacgtcgaa cgccgggcag
     1561 ccgtcggcgc ccagccggtg ctgcagcagg caggcggtcg aggggaagat caggtcgggc
     1621 gtggtggtgc cgacgaccac caggtcgagc tcgctggcgg agacgccggc cgcttccagc
     1681 gcgcgcgtcg cggcgtggta cgcgaggtcg ctggtcgttt cgccctcggc ggcgacgtgg
     1741 cgctcgcgga tgccggtgcg cgcggcgatc cactcgtcgc tggtgtcgac gaacctggcg
     1801 aggtcgtcgt tggtgaggac cttctcgggc aggtagctgc cggtgccggc gatgcgcgcg
     1861 aatacttggg tcatgccttc ctgtccgtca cgccggcgtt ctccacgccc ggcaccgtcc
     1921 acggcgagca ccgcgcatcc ctgcctcgcc ccaaaagaaa aacacgacgc gggcccgggg
     1981 cccgcatcgc gtcgtcacct cgcgcgcggc ctgcccgtga ggcagccgcg cggcgggcgc
     2041 ttactcttcg tcgacgaccc gggtcttggg cgcgatcacc tgcttgccgc ggtagtagcc
     2101 gtcggcggtg acgtggtggc gcaggtgggt ctcgccgctg gtcgggtcgg tcgccagctg
     2161 cttgggctgc agcgcatcgt gcgagcggcg ctggccgcgg cgggacgggg aaacgcggga
     2221 cttctgtaca gccatgggat tgctccagct tcgttttcgt ctgcgcaacg cggggcgcgt
     2281 ggcgctaatc cttcttcttc aatgcagcga gcgccgcgaa cgggttcgcc tgcgccgcct
     2341 cgtcctgtgg tggcgaccag tcctcctgga ccggctcgct acccggcgcc agcggcacca
     2401 ccggcagggc gaggatcagt tcgtcctcga ccagctcggc cggccgcagg ttgccgtcct
     2461 ccggcaccag cagcggctcg tagccgtccg gcagcgcggc ctcgtccgct tcgtcgcgga
     2521 tcaggccgag ccgctgcacc agttccaccg gcagcaggaa ccgctgcagc gaacgctggc
     2581 actgcagcgg cagttcggcg gcgatgcgca gctcggcata gggaatgccg aggctgtcgt
     2641 ggtcgaagcc gatctcgtag ccgacctgcc cgtccggatc gcacaacgcc tcgcgcaggc
     2701 gtggcagcga cgcgagcggc aggcttccct cgaagctgcg ccgcgcggcc accatgcgcc
     2761 aggcgtccag gacctcgggg acccgtgatt ccggagcgtg ggcggacata agccgcggaa
     2821 tgttaggccc tcggggcgtc cctgtcaaag cagcaagccc ttgtcgcggc gggaatttgc
     2881 cccgggctgg ccgcggcggc agactggccg tcccgccgcc cggacccgcg cccttggcct
     2941 ccgtcctcgc cctgctcgcc ctcgccttcg tcgtggcggc caccctcgcc ttcggcctgc
     3001 gccggcgcgg tggacgccgc cagcaggtcc tgcgccaggt cctggacgcg gccgacgcgc
     3061 tggaggcccg cctgcgcacc gcccgcgccg agatcgaggc gatcgccggc gacgacagca
     3121 acccggtgca ggaggcgatg caggagatgc tgcgccagcg gctgtggctg cagcagcatg
     3181 gggacgccgc ct
//
LOCUS       DATIQC010000116         3810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_113558, whole genome shotgun sequence.
ACCESSION   DATIQC010000116 DATIQC010000000
VERSION     DATIQC010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3810
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113558"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1157
                     /gene="fliM"
                     /locus_tag="VLM17_02505"
     CDS             156..1157
                     /gene="fliM"
                     /locus_tag="VLM17_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HSR64463.1"
                     /translation="MSMGADLLSQDEIDALLHGVDSGAVPTEAPPAPGEARQYDFASQ
                     DRIVRGKLPTLEMINERFARTWRIGLFNLVRRSADLSVRGIDLMRFGEYMHSLQVPNN
                     LNLVKMKPLRGTALVVYEPRLVFTMVDNFFGGTGKFHTRIEGREFTPTEMRVVQLMLK
                     QTFADLVDAWAPVMPVEFEYMNSEVNPHFANIISPREYIVVSRFHVELEGGGGELHIA
                     LPYAMLEPIRELLDAGVQSDRIEKDESWTRALRTQLQDAEVELSSAIAQRQISLRELS
                     RLKVGDVIPIDLPRTVTLKVEQMPLFSGEFGTHNGRNAIKVTAVNNPRTHAFEAATP"
     gene            1154..1486
                     /gene="fliN"
                     /locus_tag="VLM17_02510"
     CDS             1154..1486
                     /gene="fliN"
                     /locus_tag="VLM17_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HSR64464.1"
                     /translation="MSTNDAAARAAFDSLTADAGATGSDLNLDVILDVPVSLSLEVGR
                     ARIPIRNLLQLNQGSVVELERAAGEPLDLYVNGTLIAQGEVVVVNDRFGVRLTDVVSP
                     AERIKRLR"
     gene            1669..2031
                     /gene="fliO"
                     /locus_tag="VLM17_02515"
                     /pseudo
     CDS             1669..2031
                     /gene="fliO"
                     /locus_tag="VLM17_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017158024.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
     gene            2028..2822
                     /gene="fliP"
                     /locus_tag="VLM17_02520"
     CDS             2028..2822
                     /gene="fliP"
                     /locus_tag="VLM17_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356082.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HSR64465.1"
                     /translation="MSLPTRRGALRACVPLCFVLLLLLAGDAFAQAAPAAATPALPSV
                     NVGQIGGAPVSMPLQVLLLMTGITLLPAALLGITAFTRIIIVLGLLRQALGTGQTPSN
                     QILLALALFLTFMVMTPVFDQAWANGIAPYLNHTMDFKSAWVAASQPFRAFMLAQVRT
                     SDLMTFAGLSNTGPYATPQDVPFGVLAASFLTSELKTAFEIAFLIYIPFVIIDLVVAS
                     VLMSMGMMMLSPMLISAPFKILLFVLVDGWVLVVGSLAGSFNPIGP"
     gene            2825..3094
                     /locus_tag="VLM17_02525"
     CDS             2825..3094
                     /locus_tag="VLM17_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HSR64466.1"
                     /translation="MTPEIALTEISSGLQLALLLAAPPLLAVLAVGVVVGVLQAATSI
                     NEPTIAFVVKAMTLMATLALTGHFLLGRLVAFTIDLFHRIPQLIG"
     gene            3430..>3810
                     /locus_tag="VLM17_02530"
     CDS             3430..>3810
                     /locus_tag="VLM17_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HSR64467.1"
                     /translation="MDAVTLTTTDGLNLFGMLGTVLWHMLRIGAAFQVMPVFGGRTLP
                     MTARLLLTVALAAAISTVLPAPPAAAVDAATVLNVVREFAVGIAIGLILRLAFEAGSL
                     AGEMVSQGMGLAFATLADPLSDASS"
BASE COUNT          555 a         1385 c         1260 g          610 t
ORIGIN      
        1 gcagaccacc cagtcgctgg ccgagcgccg cggcaaggaa cgcctccagc agcaggccct
       61 gaccgaggtg cgcgccgtgc tcaagggcga gggcgcggcg gacagggtcg aggccgtcta
      121 cttcaccagc ctggtcacgc agtgaggcga atgccatgag catgggtgca gacctgctct
      181 cccaggacga gatcgacgcg ctgctgcacg gcgtcgacag cggcgccgtg ccgaccgagg
      241 cgccgccggc gcccggcgag gcgcgccagt acgacttcgc cagccaggac cgcatcgtcc
      301 gcggcaagct gccgacgctg gagatgatca acgagcgctt cgcgcgcacc tggcgcatcg
      361 gcctgttcaa cctggtgcgg cgctcggcgg acctgtccgt gcgcggcatc gacctgatgc
      421 gcttcggcga gtacatgcac tcgctgcagg tgcccaacaa cctcaacctg gtgaagatga
      481 agccgctgcg cggcaccgcg ctcgtcgtgt acgagccccg cctggtcttc accatggtcg
      541 acaacttctt cggcggcacc ggcaagttcc acacccgcat cgaggggcgc gagttcaccc
      601 ccaccgagat gcgcgtggtc cagctgatgc tcaagcagac cttcgccgac ttggtggatg
      661 cgtgggcgcc ggtgatgccg gtcgagttcg aatacatgaa ctccgaggtc aacccgcact
      721 tcgccaacat catctcgccg cgcgaataca tcgtggtcag ccgcttccac gtcgaactgg
      781 aaggcggcgg cggcgaactg cacatcgccc tgccctacgc gatgctcgag ccgatccgcg
      841 aactgctcga cgccggcgtg cagagcgacc gcatcgagaa ggacgaaagc tggacgcgcg
      901 cgctgcgcac ccagttgcag gacgccgagg tcgaactgtc gagcgcgatc gcgcagcggc
      961 agatcagcct gcgcgaactc agccggctca aggtcggcga cgtcatcccg atcgacctgc
     1021 cgcgcaccgt gaccctcaag gtggagcaga tgccgctgtt cagcggcgag ttcggcaccc
     1081 acaacggccg caacgcgatc aaggtcaccg ccgtcaacaa tccccgcacc catgccttcg
     1141 aggccgcgac cccatgagca ccaatgatgc ggcggcccgc gccgccttcg actcgctgac
     1201 cgccgatgcc ggcgccaccg gcagcgacct caacctcgat gtcatcctcg acgtgccggt
     1261 gtcgctgtcg ctggaagtcg ggcgcgcgcg catcccgatc cgcaacctgc tgcagctcaa
     1321 ccagggctcg gtggtcgagc tcgagcgcgc cgccggcgag ccgctcgacc tgtacgtcaa
     1381 cggcaccctg atcgcgcagg gcgaagtcgt ggtggtcaac gaccgcttcg gcgtgcgcct
     1441 caccgacgtg gtcagcccgg ccgagcgcat caagcgcctg cggtgagcgc gatgatcgcg
     1501 gcggccctcg tgcagaacgg catcctcgcg ccagcgaccg cggccacggc cctgcagccg
     1561 ggcgcggcgc cgacgccaac caccgcgacc gttgcgccga atgccgcgac tgcgcccgcg
     1621 acgacggccg cgccgttcgt tcctgctcca catcgcggcg cctccaccac gcaggtcggc
     1681 gcgccggcca ccttcggcaa ggcgccgagc ccgacgggcg cggtcggcgg cacggtgttc
     1741 gccctgctgt tcgtggtcgg actgatcctc gcgctcgcct ggctggcccg gcgcatgccc
     1801 ggcgtcgccg gcggttccaa ccgcgcgctg cgcgtggtcg cttcgctccc gctcggcccg
     1861 cgcgagaagg tggtggtggt cgacgtcggc ggcacgcagc tgctgctcgg cgtcggcgcc
     1921 ggcggcacgc gcacgctgca caccctcgac gcgccgctgc cggaggccgg gcgccccgcg
     1981 acgccgccgt tcgcgcagct gctggcgcag catttcggaa agaaggcatg agtctcccca
     2041 cccgccgcgg cgcgctgcgc gcctgcgtcc cgctgtgctt cgtgctgctg ctcctgctcg
     2101 ccggcgacgc cttcgcccag gccgcacccg ctgccgcgac gccggcgctg ccgtcggtga
     2161 acgtcggcca gatcggcggc gcgccggtca gcatgccgct gcaggtgctg ctgctgatga
     2221 ccggcatcac gctgctgccg gcggcgctgc tgggcatcac cgcgttcacc cgcatcatca
     2281 tcgtgctggg cctgctgcgg caggcgctcg gcaccggcca gacgccctcg aaccagatcc
     2341 tgctggccct cgcgctgttc ctcaccttca tggtgatgac gccggtgttc gaccaggcgt
     2401 gggccaacgg catcgcgccg tacctcaacc acaccatgga cttcaagagc gcgtgggtgg
     2461 cggcctcgca gccgttccgc gccttcatgc tggcgcaggt gcgcaccagc gacctgatga
     2521 cgttcgccgg cctgtccaac accggcccct acgccacgcc gcaggacgtg ccgttcggcg
     2581 tgctggccgc gtcgttcctc accagcgagc tgaagaccgc gttcgagatc gcgttcctga
     2641 tctacatccc gttcgtgatc atcgacctcg tggtcgccag cgtgctgatg tcgatgggca
     2701 tgatgatgct ctcgccgatg ctgatctcgg cgccgttcaa gatcctgctg ttcgtgctgg
     2761 tggacggctg ggtgctggtg gtcggctcgc tcgcgggcag cttcaacccg atcggtccgt
     2821 agccatgacg cccgagatcg ccctgaccga gatttcctcc ggcctgcagc tggccctgct
     2881 cctcgccgcg ccgccgctgc tcgccgtgct cgcggtcggc gtggtggtcg gcgtgctgca
     2941 ggcggccacc tcgatcaacg aaccgacgat cgccttcgtg gtcaaggcga tgacgctgat
     3001 ggccaccctc gcgttgaccg ggcacttcct gctcggccgg ctggtggcgt tcacgatcga
     3061 cctgttccac cggatcccgc agctgatcgg gtaggcaatg ggctcttgcc tttccgctgc
     3121 cggaaagccc gcgccgcatc ctgaccctaa gggcggcggg catggatgcc cgccgttttc
     3181 ggaccgagcc atggatggcg agtacgaaaa tcgcgaaggt cttcccgatc gccggattga
     3241 tttgtcgagg aggccatttc tttttggtga ctttttcttt gggccagcaa agaaaaagtc
     3301 agtcggccgc ggcagcggac gaagatcggc gcagtcgcgg aagcgccaaa agctcgcggc
     3361 tgtaagccgc tcctacaaga ccagagggac gacggtcgcg gcttacgccg ctcctacaaa
     3421 ggacatcgca tggatgcggt gaccctcacc accaccgacg gcctcaacct gttcggcatg
     3481 ctcggcaccg tgctctggca catgctgcgc atcggcgcgg cgttccaggt gatgccggtg
     3541 ttcggcgggc gcaccctgcc gatgacggcg cggctgctgc tcaccgtcgc gctcgccgcg
     3601 gcgatctcga cggtgctgcc ggcgccgccg gcggcggcgg tcgatgcggc gacggtgctg
     3661 aacgtggtcc gcgagttcgc cgtgggcatc gccatcggcc tgatcctccg cctcgccttc
     3721 gaggccggct cgctggccgg cgagatggtc tcgcagggca tgggcctggc cttcgcgacg
     3781 ctggccgatc cgctcagcga cgcctcctcg
//
LOCUS       DATIQC010000117         1971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_7933, whole genome shotgun sequence.
ACCESSION   DATIQC010000117 DATIQC010000000
VERSION     DATIQC010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7933"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1971
                     /locus_tag="VLM17_02535"
     CDS             <1..>1971
                     /locus_tag="VLM17_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011270112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HSR64468.1"
                     /translation="KRPSFDQAWQTLCAGVARRDWPRNGEGHLDKLLPERLRAFCKDG
                     LGDHAPRSRVFDALAAWLAAAGAHGHWRDARAIALLHRVRGEARARLAELKRVRRLQT
                     FDDLIDGVADALDGAHGDALAAALRAQYRFALVDEFQDTDPRQWAIFRRVFGLAQADA
                     PPALFLVGDPKQAIYRFRGGDVHTYLGAEAVAERAPALDRNFRSRPGVLRAIATLYGN
                     AGGDAFVEERIRFQPVQPGGKRADADFLRHGQPAPALTVRVVGRDPDDAQAKDFSADR
                     ARALATRACVAEIHALLVDARAGQASVDGRPLQPGDIAVLVRSHREATRIQRALAAAG
                     IPAVAAGRLSLFATDEARELLALFEALLQPADDGRLRAALATLLLGLDAAAIAALDAD
                     GTALAHHQREAQDWRERWRRSGPFALVADRCAAAGPRLLGLLDGERRLTNYLQLGEAM
                     QDAQVRAPGLHAQLDWLRNAIAEADPDDEDQLLRLESDAQRVQIVTLHKSKGLEYPLV
                     FLPFVGIGGRPASPSRQCVVHDGGARRLQWKLGAAQAWDDACQRYRVEEEAEDARLLY
                     VGLTRAEHALWLASGPFYNAAQTRLAPMLADLAALRAQPAIAVDAAPLAPPPAPLPAQ
                     GADAALPARIARRTLNGDWWVYSFTQLVKSEP"
BASE COUNT          244 a          752 c          728 g          247 t
ORIGIN      
        1 cgaagcgccc gagcttcgac caggcctggc aaaccctctg tgcaggcgtg gcgcggcgcg
       61 actggccgcg caacggcgag ggccatctcg acaagttgct gcccgagcga ctgcgtgcct
      121 tctgcaagga cgggttgggg gaccacgcgc cgcgctcgcg cgtgttcgat gccctcgccg
      181 cctggttggc ggccgcgggc gcgcacggcc attggcgtga cgcccgcgcg atcgcgctcc
      241 tgcaccgcgt gcgtggcgag gcgcgcgcgc gcctggccga gctcaagcgc gtgcgccgcc
      301 tgcagacctt cgacgacctc atcgacggcg tggccgacgc gctcgatggc gcccacggcg
      361 atgcgttggc ggcggcgttg cgcgcgcagt accgcttcgc gctggtcgac gagttccagg
      421 acaccgaccc gcgccagtgg gcgatcttcc gccgggtgtt cggcctggcg caggccgatg
      481 cgccaccggc gctgttcctg gtcggcgacc ccaagcaggc gatctaccgc ttccgcggcg
      541 gtgacgtgca tacctacctg ggcgcggagg ccgttgccga acgcgcgccc gcgctcgacc
      601 gcaacttccg ttcgcgcccc ggcgtgctgc gcgccatcgc gacgctgtac gggaacgcgg
      661 gcggcgacgc gttcgtcgaa gagcgcatcc gcttccagcc ggtgcagccg ggcggcaagc
      721 gcgccgacgc cgacttcctg cgccatggac aacctgcgcc ggcgttgacc gtgcgcgtgg
      781 tcgggcgcga ccccgacgac gcgcaggcga aggacttcag cgccgaccgc gcgcgcgccc
      841 tcgccacccg tgcctgcgtc gccgagatcc acgcgctgct cgtcgatgcg cgcgccggcc
      901 aggccagcgt cgacggccgg ccactgcagc ccggcgacat cgccgtgctg gtgcgctcgc
      961 accgcgaggc cacccgcatc cagcgcgcgc tggccgccgc cggcattccc gcggtcgccg
     1021 cgggccggct gagcctgttc gccaccgacg aggcgcgcga gctgctggcg ctgttcgagg
     1081 ccctgctgca accggccgac gacgggcgcc tgcgcgccgc gctggcgacg ctgctgctcg
     1141 gcctggacgc ggccgcgatc gccgcgctcg atgccgatgg cacggcactc gcgcaccacc
     1201 agcgcgaggc gcaggactgg cgcgagcgct ggcggcgcag cgggccgttc gcgctggtcg
     1261 ccgaccggtg cgccgccgcc ggcccgcgcc tgctcggcct gctcgacggc gagcgccggc
     1321 tgaccaacta cctgcagctc ggcgaggcga tgcaggacgc gcaggtgcgc gcgccgggcc
     1381 tgcatgcgca gctcgactgg ctgcgcaacg cgatcgccga ggcggatccc gacgacgagg
     1441 accagctgct gcggctggaa tccgacgcgc aacgcgtgca gatcgtcacc ctgcacaaga
     1501 gcaagggcct ggaatacccg ctggtgttcc tgcccttcgt cggcatcggc ggcaggccgg
     1561 cgtcgccgtc gcggcaatgc gtcgtgcatg acggcggggc gcggcggctg cagtggaagc
     1621 tgggcgcggc gcaggcatgg gacgacgcct gccagcgtta cagggtcgag gaggaggccg
     1681 aggacgcgcg cctgctctac gtcggcctga cccgcgccga acacgcgctg tggctggcga
     1741 gcgggccgtt ctacaacgcg gcgcagacgc ggctggcgcc gatgctcgcc gaccttgccg
     1801 cgctgcgcgc gcagcccgcc atcgccgtcg acgccgcccc gctggccccg ccgccggcgc
     1861 cactgccggc gcagggcgcc gacgcggcgc ttcccgcacg catcgcgcgg cgcacgctca
     1921 acggcgactg gtgggtgtac agcttcaccc agctggtgaa gagcgaaccc g
//
LOCUS       DATIQC010000118         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_502086, whole genome shotgun sequence.
ACCESSION   DATIQC010000118 DATIQC010000000
VERSION     DATIQC010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502086"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..977)
                     /locus_tag="VLM17_02540"
     CDS             complement(78..977)
                     /locus_tag="VLM17_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005413141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR64469.1"
                     /translation="MTTHVRAALLMLASTLFFGLMAITIRYASKSLSTFEIAFFRNAF
                     GLLALLPLLLRDGAGLPRTRQLPKYLLRSAIGIGSMLCGFWAIGHLPLSQAIALSYST
                     PLFVTIAAVAWLGEIVRKRRWAAVIVGFIGVLVVVRPGTSGFSLGSLVAVSAAVFSAV
                     VAIQIKQLSRVDPPDTIVFYTYAFWVPLSLVPALFAWRWPEGRAWLWLLLTGLCGTGG
                     QLLWTRALKLGDVSALTPISFMQLPVVSTAGYFLFGESVDRWTVLGATVILAANAYIA
                     HREARLARRAATSAPIEAAKPGE"
     gene            complement(1019..>1852)
                     /gene="murB"
                     /locus_tag="VLM17_02545"
     CDS             complement(1019..>1852)
                     /gene="murB"
                     /locus_tag="VLM17_02545"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HSR64470.1"
                     /translation="DDGERAIVRADAGVEWHALVRWTLGQGLAGLENLALIPGTAGAA
                     PIQNIGAYGAEVRECIHVVEAFERGTRTLQRLPAGACAFAYRDSLFKRAPDHYVVTAV
                     EFALSRAPRLRLDYAGIGEELAAMGVDAPTPSRVAEAVCRIRRRKLPDPAVVGNAGSF
                     FKNPIVPHAQAEALQREHPRLPVFPTGAFPADAASHGVAAGGPRCKLSAAWLIDQCGW
                     KGHREGDAGVAATHALVLVNHGHATGAQLLDLARRIAASVHERFGVALEPEPRIVGAR
                     W"
BASE COUNT          289 a          665 c          670 g          228 t
ORIGIN      
        1 agcgactgtc gggtgtcgtc ggtcatcgat cctccttcga gcgacccgtt gtacgggccg
       61 tcgcgtgaac ggcttcgcta ctcgcccggc ttcgccgcct cgatcggcgc gctggtcgcc
      121 gcccgccgcg ccagccgggc ctcgcggtgg gcgatgtacg cattcgcggc gaggatgacc
      181 gtggcgccga gcacggtcca gcggtcgacc gactcgccga acaggaaata cccggcggtc
      241 gacaccaccg gcagctgcat gaagctgatc ggcgtcagcg cggacacgtc gcccagcttc
      301 agggcgcgcg tccacagcag ctggccgccg gtgccgcaca ggcccgtcag cagcagccac
      361 agccaggcgc ggccctccgg ccatcgccat gcgaacagcg ccgggaccag cgaaagcggc
      421 acccagaacg cataggtgta gaagacgatg gtgtcgggcg ggtccacgcg cgagagctgc
      481 ttgatctgga tcgcgacgac cgcgctgaac accgccgcgg acaccgccac cagcgagccg
      541 aggctgaagc cgctggtgcc cggccgcacc accaccagca cgccgatgaa gccgacgatg
      601 accgccgccc agcggcgctt gcgcacgatc tcgccgagcc aggcgaccgc ggcgatggtg
      661 acgaacagcg gcgtcgaata cgacagtgcg atcgcctgcg acagcggcag gtggccgatc
      721 gcccagaagc cgcacagcat ggacccgatc ccgatcgcgc tgcgcaacag gtatttcggc
      781 aactggcgcg tgcgcggcag gcccgcgccg tcgcgcagca gcagcggcag cagcgcgagc
      841 aggccgaagg cgttgcggaa gaacgcgatc tcgaacgtcg acaggctctt cgacgcgtag
      901 cggatggtga tcgccatcag gccgaagaac agcgtgctgg cgagcatcag cagcgcggcg
      961 cggacgtggg tggtcatgcg cgcatgctcg ccggccggcg gacccgcgcg tgacgggttc
     1021 accagcgcgc accgacgatg cgcggctccg gctccagcgc gaccccgaag cgctcgtgca
     1081 ccgaggcggc gatgcggcgg gcgagatcga gcagctgcgc gccggtggca tggccgtggt
     1141 tgaccagcac cagtgcgtgc gtcgcggcca cgccggcgtc gccctcgcgg tggcccttcc
     1201 agccgcactg gtcgatcagc cacgcggcgg agagcttgca cctcgggccg ccagcggcca
     1261 cgccgtgcga cgcggcatcg gcggggaagg cgccggtggg gaataccggc aggcgtggat
     1321 gctcgcgctg caatgcctcg gcctgcgcgt gcggcacgat cggattcttg aagaagctgc
     1381 cggcattccc gaccaccgcc ggatccggca gcttgcggcg gcggattcgg cagaccgctt
     1441 cggccacccg cgacggcgtc ggcgcgtcga cgcccatcgc cgccagttcc tcgccgatgc
     1501 cggcgtagtc caggcgcagg cgcggcgcgc gcgacagcgc gaactcgacc gcggtgacga
     1561 cgtagtggtc cggcgcgcgc ttgaacaggc tgtcgcggta ggcgaacgcg caggcaccgg
     1621 cgggcaggcg ctgcagcgtg cgcgttccgc gttcgaaggc ttccaccacg tggatgcact
     1681 cgcgcacttc cgcgccgtag gcaccgatgt tctggatcgg cgccgcgccg gcggtgcccg
     1741 gaatcagggc gaggttctcg aggccggcga ggccctggcc cagcgtccac cgcaccagcg
     1801 cgtgccactc gacgccggcg tcggcgcgca cgatggcgcg ctcgccgtcg tc
//
LOCUS       DATIQC010000119         1749 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_431832, whole genome shotgun sequence.
ACCESSION   DATIQC010000119 DATIQC010000000
VERSION     DATIQC010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431832"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VLM17_02550"
     CDS             <1..228
                     /locus_tag="VLM17_02550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64471.1"
                     /translation="LRQGGVEHASLVPAESGGWVLAVPAALLDPYIARLPCRDGLPLS
                     LRTGAGIHLEAVLEVDVRDSVRSRGAARRRE"
     gene            complement(338..>1749)
                     /locus_tag="VLM17_02555"
     CDS             complement(338..>1749)
                     /locus_tag="VLM17_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HSR64472.1"
                     /translation="PVDPELESTALCLRALRAGGPALLMEQPCGSAHPLLGNLFGHRE
                     RIEAALAGRPLASLRELGELLAAVKEPRWPSSLRAALAGWPELAQLAHVAPRTVDDAA
                     FLDETLEGDAVDLARLPIQRCWPGDAGKLVTLGLVVTRGTRKPRQNVAIYRMQVLGRD
                     RVAMRWLPHRGGALDFADWQAAHPDRPFPVLVAIGADPATLLAAVAPVPDTLGEYEFA
                     GLLRGERTRVWHSRATGLDAPAGAEVLLEGFIEPGETALEGPFGDHTGYYNAQAHFPV
                     LRIARMRLRHGAIYHGSYMGRAPHDEPSVLASALNEVFVPILRKVFPEIVDFFLPPEA
                     CSYRIAVVSIRKQYAGHARRIMMGVWSYLRQFTYTKFVIVVDDDIDARDWAQVLWAVS
                     TRVDPARDTLLVENTPIDYLDFASPVAGLGSKLGIDATGKWPGETTRDWGRPIALDAS
                     VERRVDALWRDIVAATGPG"
BASE COUNT          230 a          642 c          643 g          234 t
ORIGIN      
        1 ctgcgccagg gcggcgtcga gcacgcctcg ctcgttcccg ccgagtccgg cggctgggtg
       61 ctggccgtgc ccgcggccct gctcgacccc tacatcgcgc gcctgccgtg ccgggacggc
      121 ctgccgctgt ccctgcgcac cggcgccggc atccacctcg aagccgtgct cgaggtcgac
      181 gtccgcgaca gcgtgcgcag ccgcggcgcg gcccggcgcc gggaatagcg cccccgtcga
      241 tggatcggtc gtcgggggcg ggtgtgcccg cctccgggat gcgccagata ttccgtcgct
      301 gcggcgtctt gcgcgtcgcg cactccgtcg cgatggatca accggggccg gtcgccgcca
      361 cgatgtcccg ccacaaggcg tccacgcgcc gttccaccga cgcgtcgagg gcgatcggcc
      421 gtccccagtc gcgcgtggtt tcgcccggcc acttgccggt cgcgtcgatg ccgagcttcg
      481 atcccagccc cgccacgggg ctcgcgaagt cgaggtagtc gatcggcgtg ttctcgacca
      541 gcagcgtgtc gcgcgccgga tccacgcggg tcgacacggc ccacagcacc tgcgcccagt
      601 cgcgcgcgtc gatgtcgtcg tccaccacga tcacgaactt ggtgtaggtg aactggcgca
      661 ggtacgacca cacgcccatc atgatccggc gcgcatggcc ggcgtactgc ttgcggatcg
      721 agaccaccgc gatgcggtag gagcacgctt ccggcggcag gaagaaatcc acgatctccg
      781 ggaacacctt gcgcaggatc ggcacgaaca cctcgttcag cgccgacgcg agcaccgacg
      841 gctcgtcgtg cggggcgcgg cccatgtagc tgccgtggta gatcgcgcca tggcgcaggc
      901 gcatgcgggc gatccgcagc accgggaagt gggcctgcgc gttgtagtag ccggtgtggt
      961 cgccgaacgg cccctcgagc gcggtctcgc ccggctcgat gaagccttcg agcaggacct
     1021 ccgcacccgc cggcgcgtcg aggccggtgg cccggctgtg ccacacgcgc gtgcgttcgc
     1081 cgcgcagcag gccggcgaat tcgtattccc ccagggtgtc cggcaccggc gcgaccgccg
     1141 ccagcagggt cgcgggatcg gcgccgatcg ccaccagcac cgggaaaggc ctgtccggat
     1201 gggccgcctg ccagtcggcg aagtcgagcg cgccgccgcg gtgcggcagc cagcgcatgg
     1261 ccacgcggtc gcggccgagc acctgcatgc ggtagatggc gacgttctgg cgcggcttgc
     1321 gggtgccgcg ggtgacgacc aggccgagcg tgaccagctt gccggcatcg cccggccagc
     1381 agcgctggat cggcaggcgc gcgaggtcga cggcatcgcc ctccagggtc tcgtcgagga
     1441 acgccgcgtc gtcgaccgtg cgcggcgcga cgtgggccag ctgcgcgagt tccggccagc
     1501 ccgcgagcgc ggcgcgcagg ctcgacggcc agcgcggttc cttgaccgcg gcgagcagct
     1561 cgccgagttc acgcagcgag gcgagcgggc gtcccgcgag cgcggcctcg atgcgctcgc
     1621 ggtggccgaa caggttgccc agcaggggat gcgcgctgcc gcagggctgt tccatcagca
     1681 gcgccgggcc gcccgcgcgc agcgcgcgca ggcacagcgc ggtggattcg agctcgggat
     1741 cgaccggcg
//
LOCUS       DATIQC010000120         2143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_113925, whole genome shotgun sequence.
ACCESSION   DATIQC010000120 DATIQC010000000
VERSION     DATIQC010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113925"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="VLM17_02560"
     CDS             complement(<1..442)
                     /locus_tag="VLM17_02560"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64473.1"
                     /translation="MVIDTPRLVLRCLDLDDAPFFLRLVNEPSFIQNIADKGVRTLDD
                     AREHLRNGPMASYARHGHGLWRVDLKDTGTPIGICGLIRRDVLDDVDVGYALLPEFCG
                     LGYAAEAAAAALAHARDALGLSRVVAVVNADNARSLRLLAKLGFR"
     gene            complement(786..1517)
                     /locus_tag="VLM17_02565"
     CDS             complement(786..1517)
                     /locus_tag="VLM17_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64474.1"
                     /translation="MPSVASTSTLRSGWTSVRPAPGAVGSRACLAMLAGLSLTACRPR
                     DDPPRATDGGPEIAGATRPSAEARMQPERRDPRPHARSHVLLGIDFSRPLRLPECART
                     YNSLDRPDRTCVYLGGRDHKPFKIEFRNGAVPDFLKRDNAAIATDDRGHPAMLRFGIA
                     DDPALQGKAVDAMLETFGPPTRVENAGDTPRLGTSKVGTWRHEDYVIEYFFTPTGGGV
                     VQMETRRFHDAPPPPATGATGKAKW"
     gene            1869..>2143
                     /locus_tag="VLM17_02570"
     CDS             1869..>2143
                     /locus_tag="VLM17_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HSR64475.1"
                     /translation="MPTATHALPALDEQALRARNRHFYDGLWSDARLCDPARFNTWPL
                     VSELIAGATRRLEVAPGLRPRFPVPGTHFVDISVPALRSLRAADGQAL"
BASE COUNT          321 a          756 c          750 g          316 t
ORIGIN      
        1 agcggaagcc gagttttgcg agcaaccgca gcgaacgcgc gttgtccgca ttgaccacgg
       61 ccacgacccg gctcaggccg agggcgtcgc gggcgtgggc cagggccgcg gccgcggcct
      121 cggcggcata gcccagcccg cagaattccg gcagcagcgc gtagccgaca tcgacgtcgt
      181 cgaggacatc gcgccggatc agcccgcaga tgccgatcgg cgtgcccgtg tccttcaggt
      241 ccaccctcca caggccgtgg ccatggcggg cgtagctcgc catcggtccg ttgcgcaggt
      301 gctcgcgcgc atcgtccagc gtgcgcacgc ccttgtcggc gatgttctgg atgaagctcg
      361 gttcgttgac gagtcgcagg aagaacgggg cgtcgtcgag atcaaggcag cgcagaacga
      421 gccggggcgt atcgatgacc atgcgaagtc gtgaccgggt ggcgaggcag ggatcgtccc
      481 cgtggagccg caggcccgca tgtgccgatc ggcccggttt ccgacgacgc cagcgtcccg
      541 ggcctgattg ggcaaaacgc agccgcatcc tggggtgtgc agcggcccgg aatctcgtca
      601 agccgcgcag cctcgtagcc ggggtgagcg cagcgcaccg gggatcgcgc tggttcgcgg
      661 atgcatcgac accgccggtg cactcacggg acgagatccg ctggcgctgc agcgtgcaag
      721 cacatcagcc cgcatccggg ccatcgacga ctttttgcgg gcggtgcgcg ggcgcacacc
      781 aggagtcacc acttcgcctt gccggtcgcg ccggtggccg gcggcggcgg cgcgtcatgg
      841 aatctcctcg tctccatctg cacgaccccg ccgccggtcg gggtgaagaa atactcgatc
      901 acgtagtcct cgtgccgcca cgtgccgacc ttggacgtgc cgagcctcgg cgtgtcgccc
      961 gcgttctcca cgcgcgtggg cggtccgaac gtctccagca tcgcatcgac cgccttgccc
     1021 tggagcgccg gatcatcggc gatgccgaag cggagcatgg ccgggtggcc gcggtcgtcc
     1081 gtggcaatgg cggcgttgtc ccgcttcagg aaatccggca cggcgccatt gcggaattcg
     1141 atcttgaacg gcttgtggtc acggccgccc aggtacacgc aggtcctgtc cgggcggtcg
     1201 aggctgttgt aggtccgcgc gcattccgga agccgcagcg gcctggagaa gtcgatgccg
     1261 agcaggacgt gcgagcgcgc gtgcggcctc ggatcgcgtc gttcgggctg catccgcgcc
     1321 tcggcggatg gccgggtggc gccggcgatt tccggaccgc cgtccgttgc ccgcggcgga
     1381 tcgtcccgcg ggcggcaggc cgtcaacgac aacccggcca gcatggccag gcaggcccgc
     1441 gagcccacgg cgccgggcgc gggacgcacc gacgtccagc cgctgcgaag agtcgacgtc
     1501 gacgcgaccg atggcatggc atccggtcac gcggcggacg gatgaattgc tgcggaggcc
     1561 atggttttcc tccgggaaat acaattctga accggcgttt cgacagcctg actgccgctt
     1621 cgcatcgcgg catgggcgcc gctttcagaa gccctcgccc gtggccatcg tcgttgggtt
     1681 gcaacgatca aacgcgacgc gagcggcctg ccgggccgtg aagcatcgtg gcattcgccg
     1741 tagccccggc aggcgcagcg cacccgggat ctttggatcg cgatgaaccc cgggcgcgcg
     1801 cgacggcggg aatgcggcag aacggcaacg ccggacacat gcgcgcggcc gccctgtagc
     1861 atcggcccat gccaaccgcc acccatgcat tgcccgcact cgacgaacag gcgctgcgcg
     1921 cgcgcaaccg ccacttctac gacggcctgt ggagcgacgc ccgcctctgc gaccccgcgc
     1981 gcttcaacac ctggccgctg gtcagcgaac tgatcgcggg cgccacccgg cgcctggaag
     2041 tcgcgcccgg cctgcgcccc cgcttccccg tgcccggcac ccacttcgtc gacatcagcg
     2101 tgccggcgct gcggagcctg cgcgccgcgg atggtcaggc cct
//
LOCUS       DATIQC010000121         3078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_467552, whole genome shotgun sequence.
ACCESSION   DATIQC010000121 DATIQC010000000
VERSION     DATIQC010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467552"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..846
                     /locus_tag="VLM17_02575"
     CDS             16..846
                     /locus_tag="VLM17_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR64476.1"
                     /translation="MRHLVSDAPRVMVVDGSKLVRKLIGDVLARELPGAEVIACDGLA
                     SARATLADKQVDLVTTSLVLPDGDGMALARAVREAAGQSYVPVIVVSGDVQARLESRT
                     LGEDVTDYFDKALGHGALAAFIRGYVQPQPIPGARVLYVEDSKVVAAATKRMLERNGM
                     QVIHTVGAEDAIAWLESHRGGADAPGADLVLTDVYLKGELSGRDLLHRIRGEFGYGKR
                     ALPVLVMTGDANRDNQSQLLREGANDLVLKPIEERLLVTKALFQLRVARLPEQRAFDA
                     "
     gene            954..1664
                     /gene="ung"
                     /locus_tag="VLM17_02580"
     CDS             954..1664
                     /gene="ung"
                     /locus_tag="VLM17_02580"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HSR64477.1"
                     /translation="MPSRMAEDRIQLEPSWKAHVGDYLRRPDMQQLATFLRQRRSGGA
                     RIYPAGGEIFAALDATPFDKVKVVILGQDPYHGPGQAHGLCFSVQPGVPAPPSLENIF
                     KELQRDLGIPRPKHGCLRHWAEQGVLLLNSVLTVEDGRAGAHAGKGWEGFTDHVVDVL
                     NREREHLVFLLWGSYAQKKGAVIDARRHKVLRAPHPSPLSAHRGFIGCGHFSAANEYL
                     RRTGQAPIDWSLPDAEQG"
     gene            1661..2353
                     /locus_tag="VLM17_02585"
     CDS             1661..2353
                     /locus_tag="VLM17_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64478.1"
                     /translation="MSARHAPLLVSVHMPKTAGTSFAHALREHFASELRQDYAAMPFN
                     VPRGRRELQALRGGWALRHRIPGEVRAIHGHFLPLTYRLALASRPAHFITWLRHPAER
                     LLSHYTFWRRTRAVATPAQPLCYRMVQEDWSLERFCLGPEMRDLYRQCLWGFDRDRFA
                     FVGITERYDEDLVRFARRFLGGRIPAITRARANPERSADDYAIDPVLRARIEQHHAGD
                     VALYRWALQLPR"
     gene            2486..3004
                     /locus_tag="VLM17_02590"
     CDS             2486..3004
                     /locus_tag="VLM17_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64479.1"
                     /translation="MSIRSMILAGGLPAMIALACLAVPGAASANSYRAHYISATAVCS
                     GPLPVYDNNLKRRPLGILNQGSSSVFISCSVPSDFEGDQTNGSNIVEVHFNSFGAAGT
                     VNCTLNAGNRSTSGSVATTTNVTAGGTNYLSWAGIDKVNAWGSYNFSCTLPPDIEMNL
                     IIYQDGDASSLL"
BASE COUNT          458 a         1114 c         1038 g          468 t
ORIGIN      
        1 ggcagcgagc acgacctgcg ccacctggtg tccgacgcgc cgcgcgtgat ggtggtcgac
       61 gggtcgaagc tggtgcgcaa gctcatcggc gacgtgctcg cgcgcgaact gccgggcgcg
      121 gaagtcatcg cctgcgacgg cctcgccagc gcgcgcgcca cgctcgccga caagcaggtc
      181 gacctcgtca ccacctcgct ggtgctgccc gacggcgacg gcatggcgct cgcgcgcgcg
      241 gtgcgcgagg cggccgggca gagctacgtg ccggtgatcg tggtgtcggg cgacgtccag
      301 gcgcggctgg aatcgcgcac gctcggcgag gacgtcaccg actacttcga caaggcgctc
      361 ggccacggcg cgctcgccgc gttcatccgc ggctacgtgc agccgcagcc gattcccggc
      421 gcgcgcgtgc tgtatgtcga ggacagcaag gtggtcgccg cggcgaccaa gcgcatgctc
      481 gagcgcaacg gcatgcaggt gatccacacg gtcggcgcgg aagacgcgat cgcctggctg
      541 gaatcgcacc gcggaggcgc cgacgcgccg ggcgccgacc tggtgctcac cgacgtctac
      601 ctcaagggcg agctcagcgg ccgcgacctg ctgcaccgca tccgtggcga attcggctac
      661 ggcaagcgcg cgctgccggt gctggtgatg accggcgacg ccaaccgcga caaccagagc
      721 cagctcctgc gcgagggcgc caacgacctc gtgctgaaac ccatcgagga gcggttgctg
      781 gtgaccaagg cgctgttcca gctgcgcgtg gcgcgcctgc ccgagcagcg cgcattcgat
      841 gcgtgagcga ctcccgcgcc tgcccggcgt tgcgccggcg cgcggggccg cccgccggcg
      901 cggcagccgg ccgcagctga tcggccgcgg gtgcggaagc aacccgtacg acgctgcctt
      961 cgcgcatggc tgaagaccgc atccagctcg agccgtcctg gaaagcgcac gtcggcgact
     1021 acctgcgccg tcccgacatg cagcagctcg ccaccttcct gcgccagcgc aggtcgggcg
     1081 gtgcgcgcat ctatcccgcg gggggcgaga tcttcgccgc gctggacgcc acgcccttcg
     1141 acaaggtcaa ggtggtgatc ctcggccagg atccctacca cggccccggc caggcgcacg
     1201 gcctgtgctt ctcggtgcag ccgggcgtgc ccgcgccgcc gtcgctggag aacatcttca
     1261 aggagctcca gcgcgacctc ggcatcccgc gtccgaagca cgggtgcctg cgccattggg
     1321 cggaacaggg cgtgctgctg ctcaacagcg tgctcaccgt cgaggacggc cgcgcaggcg
     1381 cgcacgccgg caagggctgg gaagggttca ccgaccacgt cgtcgacgtg ctcaaccgcg
     1441 agcgcgagca cctggtgttc ctgttgtggg gcagctatgc gcagaagaag ggggcggtga
     1501 tcgatgcgcg ccggcacaag gtgctgcgcg cgccgcatcc ctcgccgctg tcggcgcatc
     1561 gcggcttcat cggttgcggg catttttccg ccgccaacga atacctgcgt cgcaccggcc
     1621 aggcgccgat cgactggtcg ctgccggacg cggagcaggg atgagcgccc gccacgcccc
     1681 gctgctggtg tccgtgcaca tgccgaagac ggcgggcacc agcttcgcgc acgccctgcg
     1741 cgaacatttc gcgagcgagt tgcgccagga ctacgcggcg atgccgttca acgtgccgcg
     1801 cggtcgccgc gaactgcagg cgctcagggg cggatgggcg ctgcggcacc gcatcccggg
     1861 ggaggtgcgg gcgatccacg gtcatttcct gccgttgacg tatcggctgg cgctggccag
     1921 ccggccggcg cacttcatca cctggctccg ccacccggcc gagcggttgc tgtcccatta
     1981 caccttctgg cggcgcaccc gcgcggtggc gacgcccgcg cagccgctgt gctaccggat
     2041 ggtgcaggag gactggtcgc tcgagcgctt ctgcctgggg ccggagatgc gcgacctgta
     2101 ccgccagtgc ctgtggggct tcgatcgcga ccgtttcgcc ttcgtcggca tcaccgagcg
     2161 ctacgacgag gacctggtcc gcttcgccag gcgcttcctg ggcgggcgca tcccggccat
     2221 tacccgcgcg cgggccaacc ccgagcggtc cgccgacgac tacgcgatcg acccggtcct
     2281 ccgtgcccgg atcgagcagc accatgcggg cgacgtcgcc ctctaccgct gggccctgca
     2341 actcccccgc tgactgaatg gccgacggcc gtcacatttc ccgtgtaggc ggggaggtgg
     2401 gggaaacacc gttctttcgc atcgcgccgg ccttgccggt gcggactccg cctgtccgtc
     2461 cactcagact tgaaggagtt tctcgatgtc gatccgatcc atgatcctgg ccggcggatt
     2521 gcccgccatg atcgccctgg cctgcctcgc cgttcccggc gccgcatcgg ccaacagcta
     2581 ccgcgcgcat tacatctcgg ccaccgcggt ctgctccggc ccgctgccgg tgtacgacaa
     2641 caacctcaag cgccgcccgc tcggcatcct caaccagggc tcgtccagcg tcttcatttc
     2701 gtgctcggtg ccgtccgatt tcgagggcga ccagaccaac ggctcgaaca tcgtcgaggt
     2761 gcatttcaac tccttcggcg ccgccggcac ggtcaactgc acgctcaatg cgggcaaccg
     2821 ctcaacctca ggctcggttg ccacgaccac gaacgtcact gccggcggga ccaactacct
     2881 gagctgggcc gggatcgaca aggtgaatgc ttggggttcg tacaacttca gctgcaccct
     2941 gccgcccgac atcgagatga acctgatcat ttatcaggac ggcgacgcga gcagcctgct
     3001 ctgaatcgtt cccggggcgg cgccgccagg cgccgctcct cgccaggatc cgacaagcat
     3061 gcaaagtcat tcccatcg
//
LOCUS       DATIQC010000122         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_608750, whole genome shotgun sequence.
ACCESSION   DATIQC010000122 DATIQC010000000
VERSION     DATIQC010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608750"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VLM17_02595"
     CDS             <1..619
                     /locus_tag="VLM17_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR64480.1"
                     /translation="KQLLVERQRAVVAEQRRQVDALTLRAPFDGQVGQVQVAQRANVA
                     AQAPVLSVVDLSRFEVEIKVPESFARDLGIGMPAQITSGSGEPYPGEVSAVSPEVVNG
                     EVTARLRFSGRQPPGLRQNQRLSARILLGTRRNVLKVERGPFLEQGGGTSAWVMDGDT
                     ASPRPIRTGVASLGEVEIVGGLKEGDRVVVSGSDQFGDARRVSIH"
     gene            674..1405
                     /locus_tag="VLM17_02600"
     CDS             674..1405
                     /locus_tag="VLM17_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR64481.1"
                     /translation="MLDMRQVTKVYRTELVETHALRSLDLHVREGEFVAVTGPSGSGK
                     TTFLNIAGLLETFTGGTYVLDGQDVSGLSDDARSRLRNQKIGFIFQSFNLIPDLNLFD
                     NVDVPLRYRGMSAGERRQRIEESLAKVGLGSRMKHYPAELSGGQQQRAAIARALAGSP
                     RLLLADEPTGNLDSQMARGVMELLEEINAAGTTIVMVTHDPELAARAQRNVHIVDGMA
                     TDLSVEPSLLRARQLASAAEANPAA"
     gene            1488..>2620
                     /locus_tag="VLM17_02605"
     CDS             1488..>2620
                     /locus_tag="VLM17_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009609681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR64482.1"
                     /translation="MFGYYFDLALRSFRRNRVLTALMVLAIALGIGASMTTLTVFHVL
                     SGDPLPRKSATLFYPQLDPEPAEGYHPGDEPSDQLTRYDAEALLKARKGARQALMTGG
                     DVAVQPQGSTLRPFSADARYASSDFFPMFDTPFRFGGGWNAGDDEGRARVAVINKDLN
                     DKLFAGANSVGRTLRLDGHDFRIVGVLDDWHPAPKFYDLNVSHYGDTEQVFLPFSTSR
                     DLELSRDGSMNCFDTRPDGVHDTDLAAPCQWMQFWVELDTPRQVADYQAFLHNYSAQQ
                     RAAGRFHRPDNVRLRGLMEFLSYKKVVPADVQLQMWLALGFLAVCLLNTVGLLLAKFL
                     RRSGEIGVRRALGASRGAICAQFLVEAGAIGVTGGALGLLLTGL"
BASE COUNT          398 a          976 c          877 g          369 t
ORIGIN      
        1 caagcagctg ctggtggagc gccagcgcgc ggtggtcgcc gagcagcgcc gccaggtcga
       61 cgcactgacc ctgcgcgcgc cgttcgacgg ccaggtcggc caggtgcagg tcgcgcagcg
      121 cgccaacgtc gccgcgcagg cgccggtgct gagcgtggtc gacctgagca ggttcgaggt
      181 cgagatcaag gtgccggaga gcttcgcccg cgacctcggc atcggcatgc cggcgcagat
      241 caccagcggc agcggcgagc cgtatccggg cgaggtctcg gcggtgtcgc cggaagtggt
      301 caacggcgag gtcaccgcgc gcctgcgctt ctccggcagg cagccgcccg gactgcgcca
      361 gaaccagcgc ctgtccgcgc gcatcctgct cggcacccgc cgcaacgtgc tcaaggtcga
      421 gcgcggcccc ttcctcgagc agggcggcgg caccagcgcc tgggtgatgg acggcgacac
      481 cgccagcccg cgcccgatcc gcaccggcgt ggccagcctc ggcgaggtcg agatcgtcgg
      541 cggcctcaag gaaggcgacc gggtggtcgt ctccggcagc gaccagttcg gcgacgccag
      601 gcgcgtctcg atccactgac atccgcacga ccgacctctc cactccctct atccgaacgc
      661 aaggaacatc gccatgctcg acatgcgcca ggtcaccaag gtctaccgca ccgaactcgt
      721 cgagacgcat gcgctgcgtt cgctcgacct gcacgtcagg gaaggcgagt tcgtcgccgt
      781 gaccggtccg tcgggctcgg gcaagacgac cttcctcaac atcgccggcc tgctcgagac
      841 cttcaccggc ggcacctacg tgctcgacgg ccaggatgtc agcggcctgt ccgacgacgc
      901 gcgcagcagg ctgcgcaacc agaagatcgg cttcatcttc cagagcttca acctgatccc
      961 ggacctcaac ctgttcgaca acgtcgacgt gccgctgcgc taccgcggca tgagcgcggg
     1021 cgagcgccgc cagcgcatcg aggagtcgct ggccaaggtc ggcctgggct cgcgcatgaa
     1081 gcactacccc gccgagctct ccggcggcca gcagcagcgc gcggcgatcg cccgcgcgct
     1141 cgccggcagc ccgcgcctgc tgctcgccga cgagccgacc ggcaacctcg attcgcagat
     1201 ggcgcgcggc gtgatggaac tgctcgagga gatcaacgcc gccggcacca ccatcgtgat
     1261 ggtgacccac gacccggagc tcgccgcgcg cgcccagcgc aacgtgcaca tcgtcgacgg
     1321 catggccacc gacctgtcgg tcgagcccag cctgctgcgg gcgcgccagc tcgccagcgc
     1381 cgccgaggcc aacccggcgg cctaggcgac acgccgcttt cctttcgacg gaccacgacg
     1441 ggcgacgccc cgtcctgcag gcggccagcc cgcccacgga gcccaggatg ttcggctact
     1501 acttcgacct cgcgctgcgc agcttccgcc gcaaccgcgt gctgaccgcg ttgatggtgc
     1561 tcgcgatcgc gctcggcatc ggcgccagca tgaccacgct gaccgtgttc cacgtgctct
     1621 cgggcgatcc gctgccgcgc aagagcgcga ccctgttcta tccgcagctc gacccggaac
     1681 cggccgaggg ctaccacccc ggcgacgaac cctccgacca gctgacccgc tacgacgccg
     1741 aggcgctgct caaggcgcgc aagggcgcgc ggcaggcgtt gatgaccggc ggcgacgtcg
     1801 ccgtgcagcc gcagggcagc acgctgcggc cgttctcggc ggatgcgcgc tacgcgtcgt
     1861 ccgacttctt cccgatgttc gacacgccgt tccgcttcgg cggcggctgg aacgccggcg
     1921 acgacgaggg ccgcgcacgg gtcgccgtga tcaacaagga cctcaacgac aagctgttcg
     1981 ccggcgccaa cagcgtgggc cgcacgctgc gcctggacgg gcacgacttc cgcatcgtcg
     2041 gcgtgctcga cgactggcac ccggcaccga agttctacga cctcaacgtc agccactacg
     2101 gcgacacgga gcaggtgttc ctgccgttct cgacctcgcg cgacctcgaa ctcagccgcg
     2161 acggcagcat gaactgcttc gacacccgcc ccgacggcgt gcacgacacc gacctcgccg
     2221 cgccctgcca gtggatgcag ttctgggtcg agctggacac gccgcggcag gtcgccgact
     2281 accaggcgtt cctgcacaac tattcggcgc agcagcgcgc cgcgggccgt ttccatcgcc
     2341 cggacaacgt gcgcctgcgg gggctgatgg agttcctctc ctacaagaag gtcgtgccgg
     2401 ccgacgtgca gttgcagatg tggctggcgc tggggttcct ggcggtgtgc ctgctcaaca
     2461 ccgtcggcct gctgctggcc aagttcctgc gccgcagcgg cgagatcggc gtgcgccgtg
     2521 cactgggcgc gtcgcgcggc gcgatctgtg cgcagttcct ggtcgaggcc ggtgcgatcg
     2581 gcgtgaccgg cggtgcgctg ggcttgctgc tcaccggcct
//
LOCUS       DATIQC010000123         3017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_149223, whole genome shotgun sequence.
ACCESSION   DATIQC010000123 DATIQC010000000
VERSION     DATIQC010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149223"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..679
                     /locus_tag="VLM17_02610"
     CDS             <1..679
                     /locus_tag="VLM17_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016904229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSR64483.1"
                     /translation="LNFRDHGDTHHLNEALFHSNRIDEVVHAAVDVARRFPHGPLVAA
                     GYSLGGNFALRLALRAPAAGLPLARVAAVCPVLDPAVTMAHMERGWRVYLRYFEKKWR
                     NSLVRKRALWPQRHAFDDATLRLGMRELTRWLVERHTDFGTLDAYFDGYSIAGPRLAG
                     LQVPADILMAADDPVIPVDEFHALRLPPSVRIELARDGGHCGFLLGGSMDGYAEAWVA
                     RRLAAAA"
     gene            726..2807
                     /locus_tag="VLM17_02615"
     CDS             726..2807
                     /locus_tag="VLM17_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR64484.1"
                     /translation="MSASPDQTVLDALRRGALSEARAAADAEVAAAPADVAALRRLAL
                     VQQQQGETDAALATLDRAIALAPDEADAHFQRAAVLLGARKLDEGQAALAQSLGLDPN
                     QFDAYVMQAQVALGRGDLEEAERLRRLAARVVPGHPHLAAIEGTIALRRGEGQRAQEL
                     LLDALRTAPENAQLHYALGFAYMQLGHLAFAEQAFRKVLQGVPSAAMLHALIADLVQQ
                     QGRPGDAAEEIAPLLADPARCTPGLLTIAGELELAANRPERALPHLRAALGLRPRDRR
                     VLLALLETWRRLDAVDDARATLDAALATTTDSIDLWHARLALEGVGSEGAAAVVERWL
                     AAAPDSVDALETRMGLQNAAGDQVGANETAQRIVDIEPGRRSAELRLVNALMERDPPA
                     AVAHVQQLLAAAPNADSRTLLQGWLGLTQDRAGQAAAAVETWTALQSALAPQRLPAWT
                     PSEPRSDWPEPGAPNPDAPPVAFLWGPPGSGVERVASLMGAVLQAFRADRFGPTPPPD
                     ALQKFRTIADLARDELEPAALVAQWRALLPQRGIDGQVVDWLLYWDNALLLALRPELP
                     EGELLIALRDPRDMLLDWLAFGAIPPLGMPTPRGGAAWLAMVLNQVAALHERDLYPHR
                     LLRLDEVANDPQALAALVGEAIGTPLPVPPASLLGPPRLAAGHWRHYAEALAEPFALL
                     APVARRLGYEA"
     gene            2828..>3017
                     /locus_tag="VLM17_02620"
     CDS             2828..>3017
                     /locus_tag="VLM17_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HSR64485.1"
                     /translation="MRIGSDSFEHRARMPAEFAMGTPEGFGANRNPELHWDDAPAGTR
                     SFALLCIDTDAPTDPATVG"
BASE COUNT          371 a         1166 c         1099 g          381 t
ORIGIN      
        1 cctcaacttc cgcgaccacg gcgacaccca ccacctcaac gaggcgctgt tccattccaa
       61 ccgcatcgac gaggtggtgc acgcggcggt cgacgtcgcg cgacgctttc cgcacggccc
      121 gctggtcgcc gccggctatt cgctcggcgg caacttcgcg ctgcgcctgg ccctgcgcgc
      181 gcccgccgcc gggttgccgc tcgcgcgggt cgcggcggtg tgcccggtgc tcgacccggc
      241 ggtgaccatg gcgcacatgg agcgcggctg gcgcgtgtac ctgcgctact tcgagaagaa
      301 gtggcgcaat tcgctggtgc gcaagcgcgc gttgtggccg cagcggcatg cgttcgacga
      361 cgccaccctg cgcctgggca tgcgcgagct gacccgctgg ctggtcgagc gccacaccga
      421 cttcggcacg ctcgacgcct acttcgacgg ctattcgatc gccggccctc gcctggccgg
      481 cctgcaggtg ccggccgaca tcctgatggc ggcggatgat ccggtgatcc cggtcgacga
      541 gttccacgcg ctgcgcctgc cgccctcggt gcggatcgag ctggcgcgcg acggcgggca
      601 ctgcgggttc ctgctcggcg gttcgatgga cggctacgcg gaggcgtggg tggcgcggcg
      661 gctggccgcg gccgcctgag ccgcacggct acaatggccg gctcgccgtc ccgctggatt
      721 tgccgatgtc cgcctcgccc gaccagaccg tcctcgatgc cctgcgccgc ggcgccctga
      781 gcgaggcgcg ggccgccgcc gacgccgagg tcgcggccgc gcccgcggac gtcgccgcgc
      841 tgcgccggct ggcgctggtg cagcagcagc agggcgagac cgacgccgcg ctggccaccc
      901 tcgaccgcgc gatcgcgctg gcgcccgacg aggccgacgc ccacttccag cgcgccgcgg
      961 tgctgctggg cgcgcgcaag ctcgacgagg gccaggcggc gctcgcgcag tcgctggggc
     1021 tcgacccgaa ccagttcgat gcctacgtga tgcaggcgca ggtcgcgctc ggccgcggcg
     1081 acctcgagga agccgaacgc cttcgccggc tggccgcgcg cgtggtgccg gggcacccgc
     1141 acctcgccgc gatcgagggc accatcgcgc tgcgccgcgg cgagggccag cgcgcccagg
     1201 agctgctgct cgacgcgctg cgcaccgcgc cggaaaacgc gcagctgcat tacgcgctcg
     1261 gcttcgccta catgcagctc ggccacctcg ccttcgccga gcaggccttc cgcaaggtgc
     1321 tgcagggcgt gccgtcggcg gcgatgctgc acgcgctgat cgccgacctc gtgcagcagc
     1381 agggacgccc cggcgacgcg gccgaggaaa tcgcgccgtt gctcgccgac cccgcgcgtt
     1441 gcacgcccgg gctgctgacc atcgccggcg aactggaact ggccgccaac cgccccgaac
     1501 gcgcgctgcc gcacctgcgc gcggcgctcg gcctgcggcc gcgcgaccgc cgcgtgctgc
     1561 tcgcgctgct ggaaacctgg cgccgcctgg atgcggtcga tgacgcgcgc gccaccctgg
     1621 atgccgccct cgccaccacc accgacagca tcgacctgtg gcacgcgcgc ctggcgctgg
     1681 aaggcgtcgg cagcgaaggc gccgcggcgg tggtcgagcg ctggctcgcc gcggcccccg
     1741 attcggtcga tgcgctggag acgcgcatgg gcctgcagaa cgcggccggc gaccaggtcg
     1801 gcgcgaatga aaccgcgcag cgcatcgtcg acatcgagcc cggccgccgc agcgccgagc
     1861 tgcgcctggt caacgcgctg atggaacgcg atccgccggc cgccgtggcg cacgtgcagc
     1921 agctgctcgc ggcggcgccg aacgccgaca gccgcaccct gctgcagggc tggctgggcc
     1981 tgacccagga ccgtgccggc caggccgccg ccgcggtcga gacctggacc gcgctgcagt
     2041 cggcgctcgc gccgcagcgg ttgccggcgt ggacgccgag cgagccgcgc agcgactggc
     2101 cggaaccggg cgcgcccaac cccgacgcac ctcccgtcgc cttcctctgg ggcccgccgg
     2161 gctcgggggt ggagcgggtg gccagcctga tgggcgcggt gctgcaggcg ttccgcgccg
     2221 atcgcttcgg accgaccccg ccgccggatg cgctgcagaa gttccgcacc atcgccgacc
     2281 tggcacgcga cgagctcgag cccgccgcgc tggtggcgca gtggcgcgcg ctgctgccac
     2341 agcggggcat cgacggccag gtggtcgact ggctgctgta ctgggacaac gcactgctgc
     2401 tcgcactgcg cccggaactg cccgaaggcg agctgctcat cgccctgcgc gatccgcgcg
     2461 acatgctgct cgactggctg gcgttcggcg cgatcccgcc gctgggcatg ccgacgccgc
     2521 gcggcggcgc cgcgtggctg gcgatggtgc tcaaccaggt cgctgcgctg cacgagcgcg
     2581 acctgtaccc gcaccgcctg ctcaggctcg acgaggtggc gaacgacccg caggcgctcg
     2641 ccgccctggt cggcgaggcg atcggcacgc cgctgccggt gccgccggcc agcctgctcg
     2701 ggccgccgcg ccttgcggcc ggccactggc gccactacgc cgaggcgctg gccgagccgt
     2761 tcgcgctgct ggcgccggtc gcccgccggc tcggctacga ggcctgatca ccacaggaga
     2821 ggatgcgatg cgcatcggca gcgacagctt cgaacaccgc gcgcggatgc ccgcggagtt
     2881 cgccatgggg acgccggaag gcttcggcgc caaccgcaat cccgagctgc actgggacga
     2941 tgcgcccgcc ggcacgcggt cgttcgcgct gctgtgcatc gacaccgacg cgccgaccga
     3001 cccggccacg gtgggcc
//
LOCUS       DATIQC010000124         3585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_291196, whole genome shotgun sequence.
ACCESSION   DATIQC010000124 DATIQC010000000
VERSION     DATIQC010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3585
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291196"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2069)
                     /locus_tag="VLM17_02625"
     CDS             complement(<1..2069)
                     /locus_tag="VLM17_02625"
                     /inference="COORDINATES: protein motif:HMM:NF024972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR64486.1"
                     /translation="MKLRTGLLALCVVLGACARGQGGDAPQGTSTMAAADAAGAPMAS
                     PGPALASPPAARLARLPDRGELVAYPGHVKRVDGAYTLYRTDVSEAHALRAMADGHLR
                     MTTPDGQLLDVRYDRHVEHPSGDWTWIGHLPGDPSAQTIITFGDQAAYGSIAQADGKP
                     PLRLTMRDGQTWLVETDPRKVAAIINSATRPTRPDYHLVRRAALPSAGQPRPAAAPIA
                     AAATATGSAAYTVDLLIGYTPGFVSAQGSVSAANTRLNYLVDVANAALANSQVGAQVR
                     LVHTMQVSYTDLNTNDLALQEMSGYKSGTGPVTPNAAFNALRAARETYGADLVSLVRP
                     FKDPEQANCGLAWLLGGAKQGIQPGQGWDDLAYSVVGDGSDVGSDGRTYYCRDETLAH
                     EMGHNEGSAHDRVTSEGGDGVLNDPDDYGAFTYSFGYKTTATTGNFYTVMAYGDSGQT
                     PYRVFSNPRITFCGGRACGTATYEDNARSLGQTIPVVVGFRPTVVPTAGAPAYADFNG
                     DGQSDVLWRNVSTGADVIWRSASAQAQQGMAPVADQAWRVAGVADFDGDGFADVLWRN
                     ASTGDDQIWRSANATTKVLLPTVALAWTVAGTGDFNGDGKGDILWRNTGNGSNVLWLS
                     GNPQTQSVLATVADQAWMPVGTGDFDADGKDDILWRNASTGGDVVWRSANSQAQLVLT
                     SVTDANWT"
     gene            complement(2179..2808)
                     /locus_tag="VLM17_02630"
     CDS             complement(2179..2808)
                     /locus_tag="VLM17_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit B"
                     /protein_id="HSR64487.1"
                     /translation="MAWTRDEMAQRAARELTDGAYVNLGIGLPTLVANYIPEGVDVWL
                     QSENGLLGIGPFPAEDEVDADLINAGKQTVTARPGASYFGSHDSFAMIRGGHIDLAIL
                     GAMQVTDTGDLANWMVPGKMVKGMGGAMDLVAGVKRVVVLMEHTAKGGEHKILKECTL
                     PLTGVGVVNRIITDLGVFDVTGDGLRLVELAPGVSEAEMAGKTGVTVRT"
     gene            complement(2810..3526)
                     /locus_tag="VLM17_02635"
     CDS             complement(2810..3526)
                     /locus_tag="VLM17_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014506572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HSR64488.1"
                     /translation="MAAAKSKQYSSADAALSGLLADGQTLAVGGFGLCGIPEALIAAL
                     RDSGVKGLTVISNNAGVDGFGLGQLLGTRQIRKMISSYVGENKEFERQFLSGELELEF
                     NPQGTLAERLRAGGAGIPAFFTRTGYGTVVAEGKETREFDGKMYVMETALHADVSLVK
                     AWKADAAGNLVFRKTARNFNPAVAMAGRVCVAEVEQLVAVGDIDPDHVHLPGIYVDRI
                     VVNASPEKRIEQRTVRAGGK"
BASE COUNT          503 a         1251 c         1264 g          567 t
ORIGIN      
        1 gtccagttcg cgtcggtgac cgaggtcaga accagctgcg cctgcgagtt cgccgaccgc
       61 cacaccacgt cgccgccggt gctggcgttg cgccacagga tgtcgtcctt gccgtccgca
      121 tcgaagtcgc cggtacccac cggcatccag gcctggtcgg ccaccgtcgc cagcaccgac
      181 tgggtctgcg ggttgcccga cagccacagc acgttcgaac cgttgccggt gttgcgccac
      241 aggatgtcgc ccttgccgtc gccgttgaag tcgccggtac cggccaccgt ccacgccagc
      301 gccaccgtcg gcagcagcac cttggtggtg gcattggccg aacgccagat ctggtcgtca
      361 ccggtggagg cgttgcgcca cagcacgtcc gcgaacccgt cgccgtcgaa atcggcgacg
      421 ccggccacgc gccacgcctg gtccgccacc ggggccatgc cctgctgggc ctgcgcactc
      481 gccgagcgcc agatgacgtc ggccccggtc gacacgttgc gccacagcac gtccgactgg
      541 ccgtcgccgt tgaagtccgc gtacgcaggc gcgcccgccg tcggcaccac ggtgggacgg
      601 aaccccacca ccaccgggat cgtctggccc aggctgcgcg cgttgtcctc gtaggtggcg
      661 gtgccgcagg cgcggccgcc gcagaacgtg atgcgcgggt tggagaacac gcgataaggc
      721 gtctgcccgc tgtcgccata cgccatcacc gtgtagaagt tgccggtggt cgcggtggtc
      781 ttgtagccga acgaataggt aaaggcgccg tagtcgtccg gatcgttgag cacgccgtcg
      841 ccgccttccg aggtcacccg gtcgtgcgcc gaaccttcgt tgtggcccat ttcgtgggcg
      901 agggtttcgt cgcggcagta ataggtccgg ccgtcgctgc cgacgtccga accgtcgccg
      961 accacggagt aggcgaggtc gtcccatccc tgccccggct ggatgccctg cttggcgccg
     1021 ccgagcagcc aggccaggcc gcagttggcc tgttccggat ccttgaaggg acgcaccagc
     1081 gacacgaggt ccgcgccata ggtttcgcgg gccgcgcgca gcgcgttgaa ggcggcattc
     1141 ggcgtgaccg gcccggtgcc cgacttgtag ccgctcattt cctgcagggc gaggtcgttg
     1201 gtgttgaggt cggtatagct gacctgcatg gtgtgcacga ggcgcacctg cgcgcccacc
     1261 tggctgttgg cgagcgcggc gttggccacg tcgaccaggt agttgaggcg ggtgttggcg
     1321 gccgagacgc tgccctgcgc gctgacgaag cccggggtgt agccgatcag caggtcgacg
     1381 gtgtaggcgg ccgagcccgt cgccgtcgcg gcggcggcga tcggcgccgc ggccgggcgg
     1441 ggttgcccgg cggacggcag cgcggcgcgg cggacgaggt ggtagtccgg ccgggtcggg
     1501 cgcgtggccg aattgatgat cgccgcgacc ttgcgcgggt cggtttcgac gagccaggtc
     1561 tggccatcgc gcatggtcag gcgcagcggc ggcttgccat cggcctgggc gatcgagccg
     1621 tacgcggcct ggtcgccgaa ggtgatgatg gtctgcgcgg aaggatcgcc ggggagatgc
     1681 ccgatccagg tccagtcacc cgagggatgc tcgacgtggc ggtcgtagcg cacgtccagc
     1741 agttgcccgt ccggcgtggt catgcgcagg tggccgtcgg ccatcgcgcg cagcgcatgc
     1801 gcctcgctga catcggtgcg gtagagcgta taggcgccat ccacgcgctt gacgtggccg
     1861 gggtaggcga ccagctcgcc gcgatccggc agccgggcga ggcgcgcggc gggcggtgat
     1921 gccagcgccg ggcccggtga tgccatcggc gcgccggcgg cgtcggccgc ggccatcgtc
     1981 gaggtcccct gcggcgcgtc gccgccctgc ccgcgggcac aggcaccgag caccacgcaa
     2041 agggccagca atccggttcg aagcttcatg ggcgacctgc acgcgaatga atggcgatgg
     2101 gactagccta tcccatacca gacatcaggc catccacggg gtgaacgccg ccacacgggg
     2161 gcggcgtccc gggagccctc aggtccgaac cgtgacgccg gtcttcccgg ccatttcggc
     2221 ctcgctcacg ccgggcgcca gctcgacgag acgcaggccg tccccggtga cgtcgaacac
     2281 gcccaggtcg gtgatgatcc ggttcaccac acccacgccg gtcagcggca gcgtgcattc
     2341 cttcaggatc ttgtgctcgc cgcccttggc ggtgtgctcc atcagcacga ccacgcgctt
     2401 gaccccggcg accaggtcca tcgccccgcc catgcccttc accatcttgc cgggcaccat
     2461 ccagttggcg aggtcgccgg tgtcggtgac ctgcatcgcg ccgaggatgg cgaggtcgat
     2521 gtggccgccg cggatcatcg cgaacgaatc gtggctgccg aagtagctcg cgccgggccg
     2581 cgcggtgacg gtctgcttgc cggcgttgat gaggtcggcg tcgacctcgt cctcggccgg
     2641 gaacggaccg atgccgagca ggccgttctc gctctgcagc cacacgtcca cgccctcggg
     2701 gatgtagttg gccaccagcg tcggcaggcc gatgccgagg ttgacgtagg cgccgtcggt
     2761 cagctcccgt gcggcgcgct gcgccatttc atcgcgggtc caggccatct cacttccctc
     2821 cggcgcgcac ggtgcgctgc tcgatgcgct tctcgggcga agcgttcacc acgatgcggt
     2881 cgacgtagat gccgggcagg tgcacgtggt cggggtcgat gtcgccgacc gccaccagct
     2941 gctcgacctc ggcgacgcac accctgccgg ccatcgcgac ggccgggttg aagttgcgcg
     3001 cggtcttgcg gaacaccagg ttgccggccg catccgcctt ccatgccttc accagcgaca
     3061 cgtcggcatg cagcgcggtt tccatcacgt acatcttccc gtcgaattcg cgcgtctcct
     3121 tgccctcggc gacgacggtg ccgtagccgg tgcgggtgaa gaacgccggg atgccggcgc
     3181 cgccggcgcg caggcgctcg gccagcgtgc cctgcgggtt gaactcgagc tcgagctcgc
     3241 cggagaggaa ctggcgctcg aattccttgt tctcgccgac gtaggacgaa atcatcttgc
     3301 ggatctgccg cgtgcccagc agctggccga ggccgaagcc gtcgacgccg gcgttgttgg
     3361 agatcaccgt cagccccttc accccggagt cgcgcagcgc ggcgatcagc gcctcgggga
     3421 tgccgcacag gccgaagccg ccgacggcga gggtctggcc atccgccaac agcccggaca
     3481 gggcggcgtc ggcactcgaa tactgtttgc tcttggcggc tgccacgggc aggactccag
     3541 gacgtgggga gggctccatt ctagcggcgc accgacgcgc gccca
//
LOCUS       DATIQC010000125         1793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_644434, whole genome shotgun sequence.
ACCESSION   DATIQC010000125 DATIQC010000000
VERSION     DATIQC010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_644434"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..683
                     /locus_tag="VLM17_02640"
     CDS             <1..683
                     /locus_tag="VLM17_02640"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64489.1"
                     /translation="QVEVLVRDAGIGLDEEQTQRIFELFTQADTAIDRARGGLGIGLT
                     LVRQLTEMHGGEVGVQSEGPGRGSEFRVRLPREQVPAVARVPAPVESAPALPSCIRHR
                     ALVIDDNRDAADTLAMMLELLGLEVRRLYDPIGFEDAYAGFLPEVIFLDVGMPGRSGY
                     DVATTLRATPGGDAVLLVAVTGWGQPEDRQRTRDAGFDHHLVKPPELASVQAICASLA
                     RARQESMA"
     gene            680..1342
                     /locus_tag="VLM17_02645"
     CDS             680..1342
                     /locus_tag="VLM17_02645"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSR64490.1"
                     /translation="MNTASGNPSGEWLDRVAHDLRGPLMPLQTAAYLLRSGQLDAARQ
                     QELVEVIERQTRQLSRMIDELGDWMRAGQQRLLGHRESCMPALLLDYAATGAGLPPAI
                     IEDRSDGAEVPGDAQRLTQLLRILLGYASTQGGVPRVRIAREGKGVRIDVAATRAPDA
                     PPATTLLDGPQAHAFDGGLGLQLLLARAIAAAHGGTLQATDEGEDVRLRCELPLADDA
                     AA"
     gene            complement(1419..>1793)
                     /locus_tag="VLM17_02650"
     CDS             complement(1419..>1793)
                     /locus_tag="VLM17_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein BatD"
                     /protein_id="HSR64491.1"
                     /translation="LTLGWALSRRAAARARAPAGVPEAQRRGTVDPRALTRALAHSDL
                     ADVAAARCALAGVGDLDAVRARLDDDTQRRAVDALQQARWGSGDGAQARARLREAFRA
                     GPRWRHRAPEAKEGLLPPLYPG"
BASE COUNT          236 a          696 c          657 g          204 t
ORIGIN      
        1 cccaggtgga agtgctggtg cgcgacgccg gcatcggcct ggacgaggaa cagacgcagc
       61 gcatcttcga gttgttcacc caggccgaca ccgccatcga ccgcgcgcgc ggcggcctcg
      121 gcatcggcct cacgctggtc cgccagctga ccgagatgca cggcggcgaa gtcggcgtgc
      181 agagcgaggg gcccggccgc ggcagcgaat tccgcgtgcg gctgccgcgc gagcaagtgc
      241 cggcggtggc gcgcgtgccc gcgccggtgg aaagcgcgcc ggcgctcccc tcctgcatcc
      301 gccaccgcgc gctggtgatc gacgacaacc gcgacgccgc cgacaccctg gcgatgatgc
      361 tcgagctgct cgggctcgaa gtgcgccggc tgtacgaccc gatcgggttc gaggacgcct
      421 acgcgggctt cctgcccgag gtgatcttcc tcgacgtcgg catgccggga cgcagcggct
      481 atgacgtggc caccacgctg cgcgccacgc cgggcggcga tgccgtgctg ctggtggcgg
      541 tgaccggctg gggccagccg gaggaccgcc agcgcacccg cgatgcgggc ttcgaccacc
      601 acctcgtcaa gccaccggaa ctggccagcg tgcaggcgat ctgcgcgagc ctggcgcgcg
      661 cgcgccagga gagcatggcg tgaacacggc gagcggcaat ccgtcgggcg aatggctgga
      721 ccgggtcgcg cacgacctgc gcggcccgtt gatgccgttg cagaccgcgg cctacctgct
      781 gcgcagcggc cagctcgacg ccgcgcggca gcaggaactg gtggaagtga tcgagcggca
      841 gacgcgccag ctctcgcgca tgatcgacga gctcggcgac tggatgcgcg ccggccagca
      901 gcgcctgctc ggccaccggg agtcctgcat gcccgcgctg ctgctggact acgcggccac
      961 cggcgccggc ctgccgccgg cgatcatcga ggatcgcagc gacggcgccg aagtgccggg
     1021 cgatgcccag cgcctcaccc agctgctgcg catcctgctc ggttacgcca gcacccaggg
     1081 cggcgtgcca cgggtgcgga tcgcccgcga aggcaagggc gtgcgcatcg acgtcgccgc
     1141 cacgcgcgcg cccgacgcgc cgccggccac caccctgctc gacggcccgc aggcccacgc
     1201 cttcgatggc ggactcggcc tgcagttgct gctcgcgcgt gcgatcgcgg ccgcgcacgg
     1261 gggcaccctg caggcgacgg acgagggcga ggacgtgcgc ctgcgctgcg agctgccgct
     1321 cgccgacgac gccgcggcct gaaccgcggc acgcgcaccg cgagttcccg ccagcgcggg
     1381 atgctcgcgc gataccggcg ccgcgccgac cggcggcctc accccgggta cagcggcggc
     1441 agcaatcctt ccttcgcctc cggcgcacga tgccgccagc gcggccctgc gcggaacgcc
     1501 tcgcgcagac gcgcccgcgc ctgcgcaccg tcgccgcttc cccagcgcgc ctgctgcagg
     1561 gcgtcgaccg cccgccgctg ggtatcgtcg tccaggcgcg cgcgcacggc gtcgagatcg
     1621 ccgacgccgg ccagtgcgca ccgcgcggcg gccacgtcgg cgagatcgct gtgcgccagc
     1681 gcgcgcgtca acgcgcgcgg gtcgacggtg ccgcggcgtt gcgcttccgg cacgcctgcc
     1741 ggcgcccgcg cgcgcgcggc cgcgcgccgc gacaacgccc agcccagcgt cag
//
LOCUS       DATIQC010000126         1901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_291281, whole genome shotgun sequence.
ACCESSION   DATIQC010000126 DATIQC010000000
VERSION     DATIQC010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291281"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1494)
                     /locus_tag="VLM17_02655"
     CDS             complement(<1..1494)
                     /locus_tag="VLM17_02655"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSR64492.1"
                     /translation="MTLPPSVFPHWLRPAWLLALLALPLLAWAWARWRARRSAWQDLV
                     DPRLLPHLLDTGAGRHRGGLGWGLLACALAVGALAGPSWQRSAQPLWRTRAPLVVALD
                     LSGASLADDLPPSRLAQARAKIAQLLQARAGGQAGLVAYADDAYTVAPLTDDNANVAL
                     LLDALAPDIMPVDGSDAGRAIAWSARLLAQAGYAQGDILLLTDHADAPARSAAAQAAR
                     AGYRVSVLGLGTSRGAAFRDRQGAIGQARLDAASLRALANAGDGTYTPLAAGIEDLGA
                     LGVLDPLQRGAVSARGEDAMLWQDQGYWLLLPLLPLAAFAFRRGGVLAALLLCLWLPW
                     QPARAAESWWRRPDQQAHARLERGAQDYRRGDFDAAARAWRGLDDADATYNLGNALAK
                     AGDYSGAIGAYDHALQLRPGMQDAIANREAVRRAMRRQPRKASASGGQAGQGRAQPQP
                     QAGQPSPQGGRRQQAREQQEPTSGPQPPQQSARAARGAQQAPPQAGSP"
     gene            complement(1491..>1901)
                     /locus_tag="VLM17_02660"
     CDS             complement(1491..>1901)
                     /locus_tag="VLM17_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HSR64493.1"
                     /translation="ANARVLVLPPAGVNTAGKIAPLTAAGLERDAGVRIHTIAFGGEG
                     DALSVFGLPIRMPGGEDSVDEATLQRIASMTGGKSFRARDTDQLAGIYAEIDRIEPIR
                     EPAERVRPRVERYPLPLGAALLCGLCALATRRRA"
BASE COUNT          228 a          717 c          726 g          230 t
ORIGIN      
        1 gggactcccg gcttgcggcg gggcctgctg cgcgcctcgt gcagcccggg cggactgctg
       61 cggcggttgc ggaccggatg tcggctcctg ctgctctcgg gcctgctgtc gccggccgcc
      121 ctgcggtgac ggttggcccg cctgcggttg cggctgcgcc cgtccttgcc cggcctgccc
      181 accgcttgcg ctggctttcc gcggctgccg gcgcatcgcc ctgcgcaccg cttcgcggtt
      241 ggcgatcgcg tcctgcatgc ctggtcgcaa ctgcagcgcg tggtcgtatg cgccgatcgc
      301 gccggagtag tcgccggcct tcgccagggc attgccgagg ttgtatgtcg cgtccgcgtc
      361 gtccagcccg cgccacgcgc gcgcggcggc gtcgaaatcg ccgcgccggt agtcctgcgc
      421 gccgcgctcg agtcgtgcgt gcgcctgctg gtcggggcgc cgccaccagc tctccgcggc
      481 gcgcgcgggc tgccagggca gccacaggca cagcagcaac gcggccagca ctccgccgcg
      541 gcggaacgcg aacgcggcga gcggcaacag cggcagcagc agccagtagc cctggtcctg
      601 ccacagcatg gcgtcctcgc cacgcgcgga gaccgcgccg cgctgcagcg gatcgagcac
      661 gccgagcgcg ccgaggtcct cgatgccggc ggccagcggc gtgtacgtgc cgtcgccggc
      721 attggccagc gcgcgcagcg aagcggcatc gagccgtgcc tggccgatcg cgccctgacg
      781 gtcgcgaaag gcggcgccgc gggacgttcc cagccccagc accgagacgc ggtagccggc
      841 gcgcgccgcc tgcgccgcgg cgctgcgcgc cggggcgtcg gcgtggtcgg tcaacaggag
      901 gatgtcgccc tgcgcgtagc cggcctgcgc cagcaatcgc gccgaccagg cgatcgcgcg
      961 gccggcatcg ctgccgtcca ccggcatgat gtccggcgcc agcgcatcga gcagcaaggc
     1021 gacgttggcg ttgtcgtcgg tgagcggggc gacggtgtag gcatcgtcgg cgtaggcgac
     1081 gaggcccgcc tgcccgccgg cgcgggcctg cagcagctgc gcgatcttgg cccgcgcctg
     1141 ggcgagccgc gacggcggca ggtcgtcggc gagcgatgcg ccggagaggt cgagcgcgac
     1201 caccagcggc gcgcgcgtgc gccacaaggg ttgcgcgctg cgttgccacg acgggcccgc
     1261 cagcgcgccc accgccaggg cgcaggcgag caggccccat cccaggccac cccggtggcg
     1321 gccggcgccg gtgtcgagca ggtgcggcag caggcgcgga tcgaccaggt cctgccaggc
     1381 gctgcgccgc gcgcgccatc gcgcccacgc ccacgcaagc aggggcagcg ccagcagcgc
     1441 gagcagccag gccgggcgca gccagtgcgg gaacacggac ggcggcaggg tcatgcgcgc
     1501 ctccgcgtgg ccagcgcgca caggccgcac agcagcgccg cgccgagcgg cagcggataa
     1561 cgttccaccc gcggccgcac gcgctcggcc ggctcccgga tcggctcgat gcggtcgatt
     1621 tccgcataga tgccggccag ctggtcggtg tcgcgcgcgc ggaacgactt gccgccggtc
     1681 atggacgcga tgcgctgcag cgtggcctcg tcgacggaat cctcgccacc cggcatgcgg
     1741 atcggcagcc cgaacaccga cagcgcgtcg ccttcgccgc cgaaggcgat ggtgtggatg
     1801 cgcacgccgg catcgcgctc gagcccggcg gccgtgagcg gcgcgatctt tccggcggtg
     1861 ttgacgccgg ccgggggcag caccagcacg cgtgcgttcg c
//
LOCUS       DATIQC010000127         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_538575, whole genome shotgun sequence.
ACCESSION   DATIQC010000127 DATIQC010000000
VERSION     DATIQC010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538575"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VLM17_02665"
     CDS             <1..365
                     /locus_tag="VLM17_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HSR64494.1"
                     /translation="HAIVAAGGEGLVLHHQAAHYTIGRSSDLLKYKPHDDAEARVVGY
                     TPGRGKDAGRLGALLVERADGVRFHLGSGFSDAERAHPPARGSWVTYRYEGVTAKGMP
                     RFARFLRVRHQLPPPDPR"
     gene            complement(591..1025)
                     /locus_tag="VLM17_02670"
     CDS             complement(591..1025)
                     /locus_tag="VLM17_02670"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSR64495.1"
                     /translation="MKALDAIDRQLIALLQDNARLSTVALAKAVGLARSSVQERLQRL
                     ETAGVIAQYTVRLGADGDPLQAWLLLRYADGFSCDDVMPLLQELPEVQLCHSVAGDTD
                     LMVLVRADTPTRLADLRERIAGFKGVDDVTTVPLLRVLLDRR"
     gene            1160..1387
                     /locus_tag="VLM17_02675"
     CDS             1160..1387
                     /locus_tag="VLM17_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64496.1"
                     /translation="MATHAFPPTDPRYHTANIEAALDDLIRHLREDVRAFDEPKAQAL
                     FETSAEVLGGIRTAFGHYDRGAEAAMREPRR"
     gene            1538..2113
                     /locus_tag="VLM17_02680"
     CDS             1538..2113
                     /locus_tag="VLM17_02680"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HSR64497.1"
                     /translation="MPLAFDTRTALIPIDVQQAFDLPAASNPAMEANGLRLLAAWRAA
                     GLPLIHVRHDSVQAGSPFRPGAPGNALRPGFEPRGDEPLVSKSVNAAFIGTDLDLRLR
                     RLGVERVVLFGLTTDMCVSTSARVAANLGYTTQVVGDATAAFDLIDADGQVVGGRELQ
                     RAHLATLHAEFAEVVATDAVVAALAGLARAA"
BASE COUNT          282 a          845 c          761 g          268 t
ORIGIN      
        1 tgcacgccat cgtcgccgcc ggcggcgaag gcctggtgct gcaccaccag gccgcgcatt
       61 acacgatcgg acgcagcagc gacctgctca agtacaagcc gcacgacgac gccgaggcgc
      121 gcgtggtcgg ttacacgccc ggccgcggca aggacgccgg ccggctcggc gccctgctgg
      181 tcgagcgcgc ggacggcgtg cgcttccatc tcggcagcgg cttcagcgat gccgagcgcg
      241 cgcatccgcc ggcgcgcggc agctgggtga cctatcgcta cgaaggcgtc accgcgaagg
      301 gcatgccgcg cttcgcccgc ttcctgcgcg tgcgccacca gctgccgccg ccggatccgc
      361 gctgagcgcg gccacgcgga ggatggccgc gacgcccgcg cgtccggcga agcgcaaggt
      421 cgtggcgcgg cccagccgga cggggtcccc atgccgccag gcccgccgca cgcagcgtcg
      481 caatccgtgc gatggccgtg cgccaccgtg gccgcctcct cgtcagggag ggcggtggcg
      541 gagcggctct gggcgccgct ccggtcaccc gccatgcggc gcgtccgccc tcagcgccgg
      601 tccagcagca cccgcagcag cggcacggtg gtgacgtcgt ccacgccctt gaagccggcg
      661 atgcgttcgc gcaggtcggc cagccgggtc ggggtgtcgg cgcgcaccag caccatcagg
      721 tccgtgtcgc cggcgacgct gtggcacagc tgcacttcgg gcagctcctg cagcagcggc
      781 atcacgtcgt cgcagctgaa accatcggca tagcgcagca gcaaccaggc ctgcagcgga
      841 tcgccgtccg cgcccaggcg caccgtgtac tgcgcgatca cccccgccgt ctccagccgc
      901 tgcaggcgtt cctgcacgct gctgcgggcg aggccgacgg ccttggccag cgccaccgtg
      961 gacaggcgcg cgttgtcctg cagcagggcg atcagctggc ggtcgatggc gtcgagggct
     1021 ttcatgcgtg gcattgtgcc ggcatgcgca tcgacgcgga cggtcagggc gcgcgcgcag
     1081 gcctccttcg cgacgcgcga tcaccggcgc ggcacgaccg gcggcctacc ctgcgggtgt
     1141 ccctccggga gtcacgccca tggccaccca cgcctttccg cccaccgacc cgcgctacca
     1201 cacggccaac atcgaagccg cgctcgacga cctgatccgg cacctgcggg aggacgtgcg
     1261 cgcgttcgac gaaccgaagg cgcaggcgct gttcgaaacc agcgcggagg tgctcggcgg
     1321 catccgcacc gcgttcggcc attacgaccg cggcgccgag gccgccatgc gcgagccgcg
     1381 gcgctagcgt tccgattccc gccggcaacc gggccccggc gtgcgtgcgt tgcgacgcga
     1441 gccggagacg cgctgccggc cgccgaccgg cactctgccg ggttgagacc ggcgcgcgcc
     1501 cgcgcgcatc gtggcgtccc tccacgagga cacgcccatg ccgctcgcct tcgacacccg
     1561 caccgcgctc atcccgatcg acgtccagca ggcgttcgac ctgcccgccg ccagcaaccc
     1621 ggcaatggag gccaacggcc tgcgcctgct ggccgcgtgg cgcgccgccg ggctgccgct
     1681 gatccacgtg cgccacgatt cggtgcaggc gggatcgccg ttccgcccgg gcgcgcccgg
     1741 caacgcgctg cgccccggct tcgaaccgcg cggcgacgag ccgctggtga gcaagtcggt
     1801 caacgccgcc ttcatcggca ccgacctcga cctgcgcctg cgccggctcg gcgtcgagcg
     1861 cgtcgtcctg ttcggcctca ccaccgacat gtgcgtctcg accagcgcgc gcgtagccgc
     1921 caacctcggt tacaccaccc aggtggtcgg cgacgcgacc gcggcgttcg acctcatcga
     1981 tgccgacggg caggtggtcg gcggccgcga actgcagcgc gcgcacctcg ccaccctgca
     2041 cgcggagttc gccgaagtgg tggccaccga cgcggtggtc gcggcactgg cgggcctggc
     2101 gcgcgccgcc tagccgcagg ccggcgcggg gcggccgcgt cgcgctgcgc gcgcta
//
LOCUS       DATIQC010000128         2046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_326366, whole genome shotgun sequence.
ACCESSION   DATIQC010000128 DATIQC010000000
VERSION     DATIQC010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326366"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..313
                     /locus_tag="VLM17_02685"
     CDS             <1..313
                     /locus_tag="VLM17_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSR64498.1"
                     /translation="PPARLFRMGFLTGALNPKVALLYLSILPQFVSQAHGSVFAQSLE
                     LGATQIAISFTFNLLIALSAAGIAGWFARKPAWLAAQRWFMASVLGGLALRMALERRG
                     A"
     gene            330..1238
                     /gene="yedA"
                     /locus_tag="VLM17_02690"
     CDS             330..1238
                     /gene="yedA"
                     /locus_tag="VLM17_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HSR64499.1"
                     /translation="MNAITQPAARTASAFAVALALAAVYVLWGSTYLAIRFALQGYPP
                     FLLGAVRMAIAGSLMYAVLRARGVAAPTRAQWITLAKLSIWMVVLSNAMVNLAETQVS
                     SGLAAIAVASMPLFAGVFSMLRGRHPSRLEWLGLVVGFAGVLWLGVGGALSGSPLGLA
                     CLVIAPLAWAWGSIWSRDQDLPSPFMAAAGQMLVGALWLVVAALLRGEHFHGMPSWQA
                     TTAMLYLVVAGSIFGFTAYIWLLHHVRPALATSYAYVNPPLAVLIGVLVGGEAFTAHD
                     LGAMAVILAGVVVITLAKARAAGGPR"
     gene            1238..>2046
                     /gene="rarD"
                     /locus_tag="VLM17_02695"
     CDS             1238..>2046
                     /gene="rarD"
                     /locus_tag="VLM17_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005989311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HSR64500.1"
                     /translation="MVGIDDRRGLWAAVASFVLWGAMPLYWHLLKGVPALQILLHRIV
                     WSALLVGGWLVWREGRGWLRAALARPRVAGLLAASGLLIGANWGLYIWAVNNGHVVES
                     SLGYFINPLLNVLLGVVFLRERLARAQWASVAVATLGVLWLTLRFGQLPWIALALAVT
                     FALYGLVRKLAAVDAMAGLAIESGYLWLPALALLGWSELHGSGGFLALAGAGYGVGID
                     LLLVASGALTALPLIGFAYAVRRAPLSAIGLLQYISPTLQFLVGVFAFHEA"
BASE COUNT          194 a          712 c          776 g          364 t
ORIGIN      
        1 cccgccggcg cggctgttcc gcatgggctt cctcaccggc gcgctcaacc ccaaggtcgc
       61 gctgctgtac ctgtcgatcc tgccgcagtt cgtgtcgcag gcgcacgggt ccgtgttcgc
      121 gcagagcctc gagctcggtg ccacccagat cgcgatcagc ttcaccttca acctgctgat
      181 cgcgttgtcc gcggcgggca tcgccggctg gttcgcgcgc aagccggcgt ggctggcggc
      241 gcagcgctgg ttcatggcca gcgtgctcgg cggcctcgcg ctgcggatgg cgctggaacg
      301 gcgcggcgca tgaccagcgg agcagccgca tgaacgccat cacccagccc gccgcgcgca
      361 ccgcgtcggc cttcgccgtc gcgctggcgc tcgccgccgt gtacgtgctg tggggttcca
      421 cctacctcgc gatccgcttc gcgctgcagg gctatccgcc gttcctgctc ggcgcggtgc
      481 gcatggcgat cgccggctcg ctgatgtacg cggtgctgcg cgcgcgcggc gtggcggcgc
      541 cgacgcgggc gcagtggatc accctggcga agctgtcgat ctggatggtg gtgctgtcga
      601 acgcgatggt gaacctcgcc gagacccagg tgagctcggg gctggcggcg atcgcggtgg
      661 cgtcgatgcc gctgttcgcc ggcgtgttct cgatgctgcg cggccgccat ccgtcgaggc
      721 tcgagtggct gggcctcgtc gtcggcttcg ccggcgtgct gtggctgggc gtcggcggcg
      781 cgctctcggg ctcgccgctg ggactggcct gcctggtcat cgcgccgctg gcctgggcct
      841 ggggctcgat ctggagccgc gaccaggacc tgccgtcgcc gttcatggcc gccgcggggc
      901 agatgctggt gggcgcgctg tggctggtgg tcgcggcgct gctgcgcggc gagcacttcc
      961 acggcatgcc gtcgtggcag gcgaccacgg cgatgctcta cctcgtcgtc gccggttcga
     1021 tcttcggctt caccgcctac atctggctgc tgcaccacgt gcgcccggcg ctggccacca
     1081 gctacgccta cgtcaacccg ccgctggcgg tgctgatcgg cgtgctggtc ggcggcgagg
     1141 cgttcaccgc gcacgacctc ggcgcgatgg cggtgatcct cgccggcgtc gtggtgatca
     1201 ccctggcgaa ggcgcgcgcc gccggcggtc cgcgttgatg gtcggcatcg acgaccgccg
     1261 cggcctgtgg gccgccgtcg cctccttcgt gctgtggggc gcgatgccgc tgtactggca
     1321 cctgctgaag ggcgtgccgg cgctgcagat cctgctgcac cggatcgtgt ggagcgcgct
     1381 gctggtcggc ggctggctgg tctggcgcga aggccgcggc tggctgcgcg cggcgctcgc
     1441 gcgaccgcgg gtggccgggc tgctcgcggc gagcggactg ctgatcggcg ccaactgggg
     1501 cctgtacatc tgggcggtca acaacggcca cgtggtcgag tcgagcctgg gctacttcat
     1561 caatccgctg ctcaacgtgc tgctgggcgt ggtgttcctg cgcgagcggc tggcgcgcgc
     1621 gcagtgggcg tcggtggcgg tcgccaccct cggcgtgctg tggctgaccc tgcgcttcgg
     1681 ccagctgccg tggatcgcgc tcgcgctggc ggtgacgttc gcgctgtacg gactggtgcg
     1741 caagctcgcc gcggtggacg cgatggcggg cctggcgatc gagagcggct acctgtggct
     1801 gccggcgctc gcgctgctgg gatggagcga gctgcacggg agcggcgggt tcctcgcgct
     1861 cgccggcgcg gggtacggcg tgggcatcga cctgctgctc gtcgccagcg gcgcgctcac
     1921 cgcgctgccg ctgatcggct tcgcctacgc ggtgcggcgc gcgccgctgt cggcgatcgg
     1981 cctgctgcag tacatctcgc cgacgctgca gttcctggtc ggcgtgttcg ccttccacga
     2041 agcctt
//
LOCUS       DATIQC010000129         5377 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_609317, whole genome shotgun sequence.
ACCESSION   DATIQC010000129 DATIQC010000000
VERSION     DATIQC010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5377
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_609317"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1606)
                     /locus_tag="VLM17_02700"
     CDS             complement(<1..1606)
                     /locus_tag="VLM17_02700"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HSR64501.1"
                     /translation="MTPLIFVTGGVVSSLGKGIAAASLAAILEARGLRVTMMKLDPYI
                     NVDPGTMSPFQHGEVYVTDDGAETDLDLGHYERYLRTRLSGKNSITTGKIYESVIRKE
                     RRGDYLGGTVQVIPHITDEIKRRIDEATAGFDVALVEIGGTVGDIESLPFLEAIRQIR
                     TERGPDAALFMHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILLCRSEQELPDG
                     ERRKIALFTNVPEKAVISAVDLDNIYKIPMRFHAQGLDQIVVERLRLEGKAHAADLSE
                     WEAVLDAAEHPVDEVTIAVVGKYVDHQDAYKSVGEALKHGGLRQRTRVRLKWIESQDV
                     ERDGDKALEGVDGILVPGGFGDRGFEGKVQTARFAREHGVPYFGICYGMQAAVVDYAR
                     NVLGLADANSTENDKQSAHPVIGLITEWRTSSGEIERRNEESDLGGTMRLGLQEQRVR
                     PGTLAHKLYGKDVVGERHRHRYEFNNRYRTQLEDAGLVMSAKSMDDLLVEMVELPQAR
                     HPWFLACQAHPEFLSTPRDGHPLFVGF"
     gene            1865..3754
                     /gene="parE"
                     /locus_tag="VLM17_02705"
     CDS             1865..3754
                     /gene="parE"
                     /locus_tag="VLM17_02705"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HSR64502.1"
                     /translation="MNSRYNAADIEVLSGLEPVKRRPGMYTDTARPNHLAQEVIDNAV
                     DEALAGHADTIEVTLHADGSCEVSDNGRGMPVDIHPEEKIPGVELILTRLHAGGKFSN
                     RNYTFSGGLHGVGVSVVNALSRQVEVFIKRDGNEYRMEFAHGDAVSKLQVVGTVGKKN
                     TGTRLRFWADPKYFDTPKFAVRALKHLLRAKAVLCPGLTVRLHDVAGDERCEWFYEDG
                     LRDYLRGELEGRELLPPDLFVGSLKKDTEVADWAVAWVPDGELVQESYVNLIPTAQHG
                     THVNGLRSGFTDALREFCDFRNLLPRGVKLAPEDVWDRVAFVLSVKMTDPQFSGQTKE
                     RLSSRQAAGFVEGAAHDAFSLWLNQHVEAGEKIAQLAIERAAARLKTEKQVVRKKVTQ
                     GPALPGKLADCISQDLSRTELFLVEGDSAGGSARQARDKDFQAILPLRGKILNTWEVA
                     SGSVLASQEVHDLAVAIGCDPGKDDIGGLRYGKVVILADADSDGLHIATLLSALFLRH
                     FPALVAAGHVFVAMPPLFRVDVGKQVFYALDEEEKRLLLEKIEREKLRGAVHVTRFKG
                     LGEMNPQQLRESTIHPDTRRLVQLTVDDEGATRALMDMLLAKKRAGDRKSWLESKGDL
                     ATLEV"
     gene            complement(4026..4217)
                     /locus_tag="VLM17_02710"
     CDS             complement(4026..4217)
                     /locus_tag="VLM17_02710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64503.1"
                     /translation="MTTPKERARRSGESVGQRLLALVVFIVLGVLLWLAYSGRYDHGI
                     GRIAAWLRAHYDLLAEALR"
     gene            complement(4214..4987)
                     /gene="hutG"
                     /locus_tag="VLM17_02715"
     CDS             complement(4214..4987)
                     /gene="hutG"
                     /locus_tag="VLM17_02715"
                     /EC_number="3.5.1.68"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050129 - N-formylglutamate deformylase
                     activity [Evidence IEA];
                     GO_process: GO:0019557 - histidine catabolic process to
                     glutamate and formate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate deformylase"
                     /protein_id="HSR64504.1"
                     /translation="METYALHRGTAPLLVSLPHDGSEIPPELAARMTAGAGRAPDTDW
                     HVSRLYAFAKELGASVLAPRLSRYVVDLNRPPDDTSLYPGQNTTGLCPTRQFSGEAVY
                     RDGAAPDPAEIGLRVERYWRPYHAALEAELQRLRAAHGRVVLWEGHSIRGECPFLFEG
                     RLPDLNLGTADGRSCAPGVQARLVAVLQAQSRYDWVVNGRFKGGYITRHYGDPAHGID
                     AVQLEISQRTYMDEDSFAWDEARATPAQAMLRSLLEAIA"
     gene            complement(5007..>5377)
                     /locus_tag="VLM17_02720"
     CDS             complement(5007..>5377)
                     /locus_tag="VLM17_02720"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397779.1"
                     /note="catalyzes the reduction of 2 glutathione to
                     glutathione disulfide; maintains high levels of reduced
                     glutathione in the cytosol; involved in redox regulation
                     and oxidative defense; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HSR64505.1"
                     /translation="GQQDARIDPADVATVVFSHPPIGRVGLGETEARARFGDDVHVYT
                     TSFRPMLHALADSPQRSLFKLVCVGEERRVAGLHLLGEGADEMLQGFAVALRRGITLQ
                     DLHDTIAIHPTSAEEVVLMR"
BASE COUNT          784 a         1857 c         1892 g          844 t
ORIGIN      
        1 tgaacccgac gaacagcgga tggccgtcgc gcggcgtcga caggaattcc gggtgcgcct
       61 ggcacgccag gaaccacggg tgccgcgcct gcggcagctc gaccatttcc accagcaggt
      121 cgtccatcga cttggcggac atgaccaggc ccgcgtcctc gagctgggtg cggtagcggt
      181 tgttgaattc gtagcggtgg cggtggcgct cgccgaccac gtccttgccg tacagcttat
      241 gcgcgagcgt accgggcctg acccgctgtt cctgcaggcc caggcgcatg gtgccgccga
      301 ggtcgctctc ctcgttgcgg cgttcgatct cgccgctgga ggtgcgccat tcggtgatca
      361 ggccgatcac cgggtgcgcc gactgcttgt cgttctcggt gctgttggcg tccgcaagcc
      421 cgagcacgtt gcgcgcgtag tcgaccaccg cggcctgcat gccgtagcag atgccgaagt
      481 acggcacgcc atgctcgcgc gcgaaccgcg cggtctgcac cttgccctcg aagccgcggt
      541 cgccgaaacc gcccggcacg aggatgccgt cgacgccttc cagcgccttg tcgccgtcgc
      601 gctcgacgtc ctgcgattcg atccacttca ggcgcacgcg cgtgcgctgg cgcaggccgc
      661 cgtgcttgag cgcctcgccc accgacttgt aggcgtcctg gtggtcgacg tacttgccga
      721 ccacggcgat ggtcacttca tcgaccggat gctcggcggc atcgagcacc gcctcccact
      781 cggacaggtc cgccgcgtgc gccttgccct ccagccgcag tcgctcgacc acgatctggt
      841 ccagtccctg cgcgtggaag cgcatcggga tcttgtagat gttgtcgagg tcgaccgccg
      901 agatgacggc cttctccggc acgttggtga acagcgcgat cttgcggcgc tcgccgtccg
      961 gcagttcctg ctcgctgcgg cacagcagga tgtcgggctg gatgccgatc gagcgcagtt
     1021 ccttgaccga gtgctgggtc ggcttggtct tcagctcgcc ggcggccgcg atgtacggca
     1081 ccagggtcag gtgcatgaac agcgccgcgt ccgggccgcg ctcggtgcgg atctggcgga
     1141 tcgcttccag gaacggcagc gactcgatgt cgccgaccgt gccgccgatc tcgaccaggg
     1201 cgacgtcgaa gccggccgtg gcctcgtcga tgcggcgctt gatctcgtcg gtgatgtgcg
     1261 ggatcacctg cacggtgccg ccgaggtagt cgccgcggcg ctccttgcgg atcaccgact
     1321 cgtagatctt gccggtggtg atcgagttct tgcccgacag gcgggtgcgc aggtagcgct
     1381 cgtagtggcc caggtccagg tcggtctcgg cgccgtcgtc ggtgacgtac acctcgccgt
     1441 gctggaacgg gctcatcgtg cccgggtcga cgttgatgta ggggtcgagc ttcatcatcg
     1501 tcacgcgcag gccgcgcgct tcgaggatgg ccgccagcga tgcggccgcg atgcccttgc
     1561 cgagcgagga caccacgccg ccggtgacga agatgagcgg agtcatgggg aagcgggctt
     1621 ccggaaaccc gtagtctacc gggtggcggg cggcggcgcg accgcggcga cgcaagtggc
     1681 tgatcggcga gccggctgcg ggccgcgccg cgggcgttct cggccgacgc cgcttggcat
     1741 cgcccccgct gccgcctggg tggcgcgaca ccggccggcc gcgcccggcc gagcggcaac
     1801 ccgggagcgt ccggctgccg ccttccgtta tcctgcctct cttttccggc agcctgctct
     1861 tcgaatgaat tcccgctaca acgccgccga catcgaagtc ctgtcgggcc tggaaccggt
     1921 caagcgccgt ccgggcatgt acaccgacac cgcgcgcccg aaccacctgg cgcaggaggt
     1981 catcgacaac gcggtcgacg aggcgctcgc cgggcacgcg gacaccatcg aggtcaccct
     2041 gcacgccgac ggcagctgcg aggtgtccga caacggccgc ggcatgccgg tcgacatcca
     2101 tccggaggag aagatccccg gcgtcgaact gatcctcacc cgcctgcacg cgggcggcaa
     2161 gttcagcaac aggaactaca ccttctccgg cggcctgcac ggcgtcggcg tcagcgtggt
     2221 gaacgcgctg tcgaggcagg tcgaggtgtt catcaagcgc gacggcaacg aataccgcat
     2281 ggagttcgcc cacggcgacg cggtgtcgaa gctgcaggtc gtcggcaccg tgggaaagaa
     2341 aaacaccggc acgcggttgc gtttctgggc cgacccgaag tacttcgaca cgccgaagtt
     2401 cgccgtgcgc gcgctgaagc acctgctgcg cgccaaggcg gtgctctgcc ccggcctcac
     2461 cgtgcgcctg cacgacgtcg ccggcgacga gcgctgcgaa tggttctacg aggacggctt
     2521 gcgcgattac cttcgcggcg agctggaggg gcgggagctg ctgccgccgg acctgttcgt
     2581 gggctcgctc aagaaggaca ccgaggtcgc cgactgggcg gtcgcgtggg tgccggacgg
     2641 cgagctggtg caggaaagct acgtcaacct gatcccgacc gcgcagcacg gcacccacgt
     2701 caacggcctg cgcagcggct tcaccgacgc gctgcgcgag ttctgcgact tccgcaacct
     2761 gttgccgcgc ggcgtgaagc tcgcgccgga agacgtgtgg gaccgcgtcg cgttcgtgct
     2821 gtcggtgaag atgaccgacc cgcagttcag cggccagacc aaggagcggc tgtcctcgcg
     2881 ccaggcggcc ggcttcgtcg agggcgccgc gcacgatgcg ttctccctgt ggctcaacca
     2941 gcacgtggag gccggcgaga agatcgccca gctcgcgatc gagcgcgccg ccgcgcgcct
     3001 gaagaccgag aagcaggtcg tccgcaagaa ggtcacgcag ggccccgccc tgcccggcaa
     3061 gctcgccgac tgcatctcgc aggacctgtc gcgcacggaa ctcttcctgg tggagggcga
     3121 ttcggccggc gggagcgcgc gccaggcgcg cgacaaggat ttccaggcca tcctgccgct
     3181 gcgcggcaag atcctgaaca cctgggaggt cgcctccggc agcgtgctcg cctcgcagga
     3241 agtgcacgac ctcgcggtgg cgatcggctg cgaccccggc aaggacgaca tcggcgggct
     3301 gcgctacggc aaggtggtca tcctcgccga cgccgattcc gacggcctgc acatcgcgac
     3361 gctgctgtcg gcactgttcc tgcgccactt cccggcgctg gtcgcggccg gccacgtgtt
     3421 cgtggcgatg ccgccgctgt tccgcgtcga cgtgggcaag caggtgttct atgcgctcga
     3481 cgaggaggag aagcgcctgc tgctggagaa gatcgagcgc gagaagctca ggggcgcggt
     3541 gcacgtcacc cgcttcaagg gcctgggcga gatgaacccg cagcagctgc gagagtcgac
     3601 catccatccc gacacccgcc ggctggtcca gctgaccgtc gacgacgagg gcgcgacgcg
     3661 cgccctgatg gacatgctgc tggcgaagaa gcgggcgggc gaccggaagt cgtggctgga
     3721 aagcaagggc gatctggcca cgctggaagt ctgaacgggc ttcttattgc tgtcggccgt
     3781 ggcgacggcc ctgacgtcat cgcagcggaa ggaccttccc ggcgcgggcg atctcgccac
     3841 gctggaagtt tgaccgggct ctgcatctcc ttcagccgtg gcgacagccc tgacctcgtc
     3901 gccacgtcac ggcatgcctg gcgcggctcg aatccaaggg cgatctcgcc acgctggaag
     3961 tttgaccggg ctcttcattt cctcgcgggt tgctccgctc ttgcggatcg cgtcggcgcc
     4021 ccccctcagc gcaacgcctc ggccaacagg tcgtagtgcg cacgcagcca cgccgcgatc
     4081 cggccgatcc cgtggtcgta gcgcccgctg taggccagcc acagcagcac gccgagcacg
     4141 atgaagacga ccagcgccag caggcgctgg cccacgcttt cgccgctgcg ccgcgcgcgt
     4201 tcttttgggg tggtcatgcg atggcctcca gcaggctgcg cagcatcgcc tgcgccggcg
     4261 tcgcgcgcgc ctcgtcccag gcgaagctgt cttcgtccat gtaggtgcgc tggctgattt
     4321 ccagctgcac ggcgtcgatc ccatgggcgg ggtcgccgta gtggcgggtg atgtaaccgc
     4381 ccttgaaccg gccgttcacc acccagtcgt agcgcgactg cgcctgcagg accgcgacga
     4441 ggcgcgcctg cacgccgggc gcgcagctgc ggccgtcggc ggtgccgagg ttgaggtcgg
     4501 gcaggcggcc ctcgaacagg aacgggcact cgccgcggat cgaatggcct tcccacagca
     4561 cgacgcggcc gtgcgctgcg cgcaggcgct gcagttccgc ctccagcgcg gcgtggtacg
     4621 gacgccagta gcgctcgacc cgcaggccga tctccgccgg atccggcgcc gcgccgtcgc
     4681 gatacacggc ttcaccgctg aactgccgcg tcgggcacag gccggtggtg ttctgcccgg
     4741 gatacagcga cgtgtcgtcc ggcggccggt tgaggtcgac gacgtagcgc gaaaggcgcg
     4801 gcgccagcac cgaggcgccg agttccttcg cgaacgcgta caggcgcgag acgtgccagt
     4861 cggtgtcggg tgcgcggccg gcgcccgcgg tcatgcgcgc ggccagttcg ggcgggatct
     4921 cgctgccgtc gtgcggcagg ctgaccagca gcggggcggt gccgcgatgc agggcgtagg
     4981 tctccatgtc gacgggtgcc ggcgcgtcag cgcatcagca ccacttcctc cgcgctggtc
     5041 gggtggatgg cgatggtgtc gtgcaggtcc tgcagggtga tgccgcgccg gagcgcgacc
     5101 gcgaagccct gcagcatctc gtcggcgccc tcgccgagca ggtggaggcc ggccacgcgg
     5161 cgctcctcgc ccacgcacac cagcttgaac aggctgcgct gcggcgaatc ggcgagcgcg
     5221 tgcagcatcg gccggaagct ggtggtgtag acgtgcacgt cgtcgccgaa gcgggcgcgc
     5281 gcctccgttt cgccgagccc gacccggccg atcggcgggt gcgagaacac cacggtggcg
     5341 acatccgcgg gatcgatccg tgcgtcctgc tggcctc
//
LOCUS       DATIQC010000130         1639 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_397322, whole genome shotgun sequence.
ACCESSION   DATIQC010000130 DATIQC010000000
VERSION     DATIQC010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397322"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1639
                     /gene="parC"
                     /locus_tag="VLM17_02725"
     CDS             <1..>1639
                     /gene="parC"
                     /locus_tag="VLM17_02725"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HSR64506.1"
                     /translation="GNFGSSDDPKSFAAMRYTESKLTPIAEVLLGELGQGTVDWVPNF
                     DGTLEEPSWMPARLPHLLLNGTTGIAVGMATDVPPHNLNEIVSACVRLLDDPDATVRD
                     LCEHVRGPDYPTSAEIITAPSDLLAMYEGGTGSVRARATFVKDGANIVVTALPYQVSP
                     SKVIEQIAQQMRAKKLPWLEDIRDESDHANPVRVVLVPRSNRVDAEQLMGHLFATTDL
                     ERSYRVNLNVIGLDGKPQVKDLRTLLSEWLVFRTDTVTRRLQHRLEKVERRLHLLDGL
                     LVAFLNLDEVIRIIRTEDEPKPALIARFALSEDQADYILETRLRQLARLEEMKIRGEQ
                     AELTKEHERIAATLASKAKLKKLVKDELLADAKKFGDARMSPLVARGAAQALAETELV
                     ASEPMTVVVSEKGWVRAAKGHDVDAASLNYREGDGLLAAVKGRSTQQVAFLDSTGRSY
                     STAAHTLPSARGNGEPLTGRFAPQPGASFQALATGDNDARFVLATSHGYGFVTRFENL
                     TGRNKAGKAMLALTPGAKVLQPASVSGDDRERVVAAT"
BASE COUNT          285 a          590 c          551 g          213 t
ORIGIN      
        1 agggcaactt cggttcgtcc gacgatccca agtcgttcgc ggcgatgcgc tacaccgaat
       61 cgaaactcac gccgatcgcc gaggtgctgc tgggcgagct cggccagggc acggtggact
      121 gggtgccgaa cttcgacggc acgctggagg agccgtcgtg gatgccggcg cgcctgccgc
      181 acctgctgct caacggcacc accggcatcg cggtcggcat ggccaccgac gtgccgccgc
      241 acaacctcaa cgagatcgtc agcgcctgcg tgcgcctgct cgacgacccc gacgcgaccg
      301 tgcgcgacct gtgcgagcac gtgcgcggcc cggactaccc gaccagcgcc gagatcatca
      361 ccgcgccatc cgacctgctc gcgatgtacg agggcggcac cggcagcgtc cgggcgcgcg
      421 cgaccttcgt gaaggacggc gccaacatcg tcgtcaccgc cctgccctac caggtgtcgc
      481 cgtcgaaggt gatcgagcag atcgcccagc agatgcgcgc gaagaagctg ccgtggctgg
      541 aggacatccg cgacgaatcc gaccacgcca acccggtgcg cgtggtgctg gtcccgcgca
      601 gcaaccgggt cgacgccgag cagctgatgg gccacctgtt cgccaccacc gacctcgagc
      661 gcagctaccg cgtcaacctc aacgtgatcg gcctggacgg caagccgcag gtcaaggacc
      721 tgcgcacgct gctgtcggaa tggctggtgt tccgcaccga cacggtcacc cgccggctgc
      781 agcaccggct cgagaaggtc gagcgtcgcc tgcacctgct cgacggcctg ctggtcgcct
      841 tcctcaacct cgacgaggtg atccgcatca tccgcaccga ggacgagccg aagcctgcgc
      901 tgatcgcgcg cttcgcgctg tcggaggacc aggccgacta catcctcgaa acgcgcctgc
      961 gccaactggc gcggctggag gaaatgaaga tccgtggcga acaggccgag ctcacgaagg
     1021 agcacgagcg catcgccgcc accctcgcca gcaaggcgaa gctgaagaag ctggtcaagg
     1081 acgagctgct cgcggatgcg aagaagttcg gcgatgcgcg catgtcgccg ctggtggcgc
     1141 gcggcgccgc gcaggcactg gccgaaaccg aactggtcgc cagcgagccg atgaccgtcg
     1201 tcgtcagcga gaagggctgg gtgcgcgcgg ccaagggcca cgacgtcgat gccgcatcgc
     1261 tgaactaccg cgaaggcgac ggcctgctcg ccgcggtgaa ggggcgcagc acgcagcagg
     1321 tcgccttcct cgattccacc gggcgcagct actcgaccgc cgcgcacacc ctgccgagcg
     1381 cgcgcggcaa cggcgagccg ctgaccggcc gcttcgcgcc gcagccgggc gcgtcgttcc
     1441 aggcgctggc caccggcgac aacgacgcgc gtttcgtgct cgcgacctcg cacggctacg
     1501 gtttcgtgac ccgcttcgag aacctcaccg gtcgcaacaa ggcaggcaag gcgatgctcg
     1561 cgctgacccc gggcgcgaag gtgctgcagc ccgcttccgt ctccggcgac gacagggaac
     1621 gcgtggtcgc ggcgaccag
//
LOCUS       DATIQC010000131        15430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_574100, whole genome shotgun sequence.
ACCESSION   DATIQC010000131 DATIQC010000000
VERSION     DATIQC010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 15430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15430
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574100"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2405)
                     /gene="mutS"
                     /locus_tag="VLM17_02730"
     CDS             complement(<1..2405)
                     /gene="mutS"
                     /locus_tag="VLM17_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HSR64507.1"
                     /translation="MRMSAEQHTPLMRQFFAAKAEHPDVLLFFRMGDFYELFYDDARK
                     AAKLLDITLTQRGASAGQPIPMAGVPVHACEGYLARLVALGESVAICEQIGDPALAKG
                     LVERKVVRIVTPGTVTDEALLSERRDTLLLALSRGGTSARSGGYGLAWADLAGGRFLV
                     NEVDGDDALEAELARLEPAEVLIADEDGWPAAVSARNGVRRRAPWLFDAGSGRRQLLQ
                     FFGLHDLTGFGIEDRPRAIAAAGALLGYVEETQKQRLPHLTAIAVEASDGAIAMNAAT
                     RRHLELDTRVDGDARTTLLGVLDSTVTPMGGRLLRRWLHRPLRDRRVVGERQHAVAML
                     VEHRTDAPLREAFRALGDLERILSRVALRSARPRDLSTLRDGLGLLPTVRSLLQPLDS
                     PRLQALADELGAHDEHADLLRRAIVAQPPVLARDGGVIADGFDAELDELRTLSTHADQ
                     FLVDLEARERAATGIATLKVGYNRVHGYFIEISKGQAERAPVHYARRQTLTGAERYIT
                     EELKAFEDKVLSARERSLAREKLLYEGLLDALNERLEPLKRCAAALSEVDVLACFAER
                     AQALDWSRPELTDAPGLCIERGRHPVVEAVRDEPFEPNDLVLGDTEDFGNRRMLVITG
                     PNMGGKSTYMRQNALIVLLAHIGSFVPAARALIGPIDRILTRIGAGDDLARGQSTFMV
                     EMAETSYILHHATSESLVLMDEIGRGTSTYDGLALADACARHLAATNRSYTLFATHYF
                     ELTALAEPASGIANVHLDAVEHHDRNGGDSLVFMHAVKDGPADRSFGLQVAALAGLPK
                     TVVR"
     gene            2452..2949
                     /locus_tag="VLM17_02735"
     CDS             2452..2949
                     /locus_tag="VLM17_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HSR64508.1"
                     /translation="MSAPDDAALHARAERLGARLRAARLMLVTAESCTGGWIAKTATE
                     IAGSSDWFDCGMVAYSYEAKQGLLGVRPETLEQFGAVSRETVVEMVSGALVHSGASVA
                     VAVTGIAGPGGGTPDKPVGTVWIAWKRRGGYPTAELYHFDGDREAVRRKTVAAALEGL
                     EALAA"
     gene            2991..3656
                     /gene="lexA"
                     /locus_tag="VLM17_02740"
     CDS             2991..3656
                     /gene="lexA"
                     /locus_tag="VLM17_02740"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011269877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HSR64509.1"
                     /translation="MQMTDTQQAILSMIAERIEAEGMPPSQAEIARAFGFKGVRAAQY
                     HLEALEAAGAIERIPGRARGIRVRQLPPPVQPSLVLATADDDTLRLPVLGQVAAGLPI
                     GADIGSDEVVLLDRVLFSPAPDYMLKVKGDSMRDEGIFDGDLIGVHRTRDARSGQIVV
                     ARIDEEITVKLLKIGKDPAGRERLRLLPRNPDYPPIEVQPGQDFAIEGLYCGLVRPSR
                     HPR"
     gene            3823..4854
                     /gene="recA"
                     /locus_tag="VLM17_02745"
     CDS             3823..4854
                     /gene="recA"
                     /locus_tag="VLM17_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HSR64510.1"
                     /translation="MDENKKRALAAALGQIEKQFGKGSVMRMGDRAVEAVEIVGTGSL
                     MLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIAECQKKGGTAAFIDAEHALDPIY
                     AAKLGVNVDDLLLSQPDTGEQALEIADMLVRSNAVDMVVVDSVAALTPKAEIEGEMGD
                     QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKF
                     YASVRLDIRRIGTIKKGEEIIGNQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELI
                     DMGVDAKLVEKSGAWYGYDGERIGQGKENARQYLKDNPAVATKLEAALREKFVPAEAP
                     PAGAGDDDA"
     gene            4868..5443
                     /locus_tag="VLM17_02750"
     CDS             4868..5443
                     /locus_tag="VLM17_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003474067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein RecX"
                     /protein_id="HSR64511.1"
                     /translation="MSDEHGMGDDAAEPADGGTGAGGTARGRQAADKPKRRRPEPSPA
                     QRALGLLVRREHSQRELTRKLVTRGVGADEAAGAVARLREAGWQDDTRFACSLARTRA
                     TNGYGPLHIRAELRTHALPEAVVASAFAALAEAGEDDWPRRAAELVRRRFGTVAGDAA
                     KARRAADLLARRGFDGDSIRAAVRGLPDAFD"
     gene            5751..8402
                     /gene="alaS"
                     /locus_tag="VLM17_02755"
     CDS             5751..8402
                     /gene="alaS"
                     /locus_tag="VLM17_02755"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HSR64512.1"
                     /translation="MKTTAEIRSDFLDFFRAKGHTIVPSAPLVPGNDPTLLFTNSGMV
                     QFKDVFLGAEKRSYVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYF
                     KKEAIAWAWELLTDIWKLPPERLLVTVYHTDDEAYALWHDTIGLPPERIVRIGDNKGA
                     PFASDNFWQMADTGPCGPCTEIFYDHGPDIAGGPPGSPDEDGDRYIEIWNLVFMQFDR
                     QADGSLQPLPAPCVDTGMGLERLTAVLQHVHSNYEIDLFQALIRTAAQLTGTADLHNK
                     SLRVIADHIRACSFLIVDGVLPSNEGRGYVLRRIIRRAIRHIWKLGGLNAEGTFWKMV
                     PTLVEVMGDAYPEIVIRRELVERALKAEEAAFAQTLDAGMQRLESYLHRHEGRVDGEQ
                     LFQLHDTYGCPPDLIADIVREREGASLTPSAMTDYDRLMEQQRERARAAGKFGGGTTL
                     PAELVAQLRPSEFLGYDELAAGGLQVLALLRDGRPVEAIAAGDEAIVILDRTPFYAES
                     GGQVGDAGELAEQGVRFVVRDTLKLAGQFHGHAGALEAGTLKVGDLLMGAVDAPRRAA
                     TVLNHSATHLLHSALRSVLGTHVTQKGSLVAPDRLRFDFAHFQPMTAGELAAVERMVN
                     AGIRANHAAEVHHMGMDEALEFGAMALFGEKYGERVRVLRMGDASTELCGGTHVARTG
                     DIGLFKIVSEGGVSAGVRRIEAVTGQGALDYVEAEEARLAEAAQLLGGNAGEVGDKLR
                     VLLDRQKRLERELEAMKARAASGATADLAAQAVDVAGIKVLAARLEGFDGKALREAMD
                     RFKQQLGDAVIVLAGTAEGKAALVAGVSGAAGGRVKAGELLAHVAAQVNGKGGGRPDM
                     AQGGGEDSAALPVALAGVRDWVAAKLG"
     gene            8596..8808
                     /gene="csrA"
                     /locus_tag="VLM17_02760"
     CDS             8596..8808
                     /gene="csrA"
                     /locus_tag="VLM17_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HSR64513.1"
                     /translation="MLILTRRVGETLMIGDSVTVTVLGVKGNQVRIGITAPKDVAVHR
                     EEIYQRIQRGDDGEGASPAGQDTPAP"
     gene            8865..8957
                     /locus_tag="VLM17_02765"
     tRNA            8865..8957
                     /locus_tag="VLM17_02765"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8899..8901,aa:Ser,seq:gct)
     gene            9024..9100
                     /locus_tag="VLM17_02770"
     tRNA            9024..9100
                     /locus_tag="VLM17_02770"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9058..9060,aa:Arg,seq:acg)
     gene            complement(9266..9907)
                     /locus_tag="VLM17_02775"
     CDS             complement(9266..9907)
                     /locus_tag="VLM17_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HSR64514.1"
                     /translation="MFNRTTTVILAVALAAGLGLWAAQRWLGHGPTGQPELQAVRLFD
                     QSRELPPFSLRQSDGTPLVPGELKGHWTLVFLGFTHCPDVCPTTLAELAQAQKRWAAL
                     PESTRPRVLFVSVDPDRDTPDRAGEYAHGFHRDTLAATGDIPSLEAFARSLSMVFMKV
                     PAPAGAPADQYSVDHSASIAVLDPQARMAGVILPPLQPAAIAGDLEKLGADRR"
     gene            10036..10989
                     /gene="prmB"
                     /locus_tag="VLM17_02780"
     CDS             10036..10989
                     /gene="prmB"
                     /locus_tag="VLM17_02780"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008276 - protein methyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0018364 - peptidyl-glutamine methylation
                     [Evidence IEA];
                     GO_process: GO:0042273 - ribosomal large subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HSR64515.1"
                     /translation="MTDELETIIDLIRYGASRFNAAGLTFGHSYDNALDEATQLVLHA
                     LHLPHDLSPVYGQAKVTLAEKEDVLALFLRRIEERVPAAYLTGEAWFAGLSFRTDRRA
                     LVPRSPIAELIEAGFEPWLGGREVVRALDLCTGSGCIAIATAHYNPDWHVDAVDLSDD
                     ALALAAENKARLHADNVRLLKSDLFSALAGEHYDLIVSNPPYVTNAETDALPREYSYE
                     PELGLRAGDDGLDLVLRILRDAPLHLTEHGLLVCEVGEAEHALVQLLPELPMAWVEFK
                     VGQMGVFVVERHELAAHNPRIAALADARERRFAAPPAASLF"
     gene            11108..12205
                     /gene="aroC"
                     /locus_tag="VLM17_02785"
     CDS             11108..12205
                     /gene="aroC"
                     /locus_tag="VLM17_02785"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HSR64516.1"
                     /translation="MNTFGQLLRVTTFGESHGPAIGCVVDGCPPGIALAPEDFAADLA
                     RRATGRTRHTSQRHEADEVEILGGVYEGRTTGTPIALLIRNTDARSKDYAAIATQFRP
                     GHADYTYWQKYGHRDPRGGGRASARETTMRVAAGVVAKKWLAARHGVTVRGYLAQIGE
                     VLPRRSAWAAVESNPFFWPDADQVPELEAYMDALRKSGDSVGARITVVATGVPPGWGE
                     PVYGKLDAELAAAMMSINAAKGVEVGDGFASVMQKGSAHRDEMTPEGFLSNHAGGILG
                     GISTGQDILVSVAFKPTSSLRLPARGVDVEGNAVEVVTTGRHDPCVGIRAVPICEAML
                     ALVLMDQALRHRAQCGDVGDVAPRVPAMAKR"
     gene            12333..13349
                     /locus_tag="VLM17_02790"
     CDS             12333..13349
                     /locus_tag="VLM17_02790"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012437949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HSR64517.1"
                     /translation="MTRQFNVAVVGATGAVGETMLAILAERKFPIASIVALASERSAG
                     GKVKFGNRDIVVQDLAAFDPGGIDIALFAAGGSISKEYAPKFAAAGAVVIDNSSTFRY
                     DDDVPLVVAEVNPEQVRNRPRGIIANPNCSTMQMVVALKPIFDAAGIERINVATYQSA
                     SGAGRSGLEELGRQTAGILNFQDAQPKRFQVQIAFNLIPHIDDFQDNGYTKEEMKLVW
                     ETRKILGDDGIQVNPTAVRVPVFYGHSEAVNVETKKKISAAEVRKLLEKAPGVVVVDE
                     AVPGGYPTPVTHASGTDPVYVGRIRDDFSHPRAVNLWVVSDNIRKGAALNAVQVAELV
                     AAEG"
     gene            13460..14062
                     /locus_tag="VLM17_02795"
     CDS             13460..14062
                     /locus_tag="VLM17_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64518.1"
                     /translation="MNNTLRRALAIALAIAAGPASALGLGQIQVKSQPGQPLLAEIPI
                     VSSDPSELQGLQVQLASPETFRRIGLEPPQGDVSQLHFEPAIDAQGRPVIRITSPAPV
                     QQPLLTFLLEVDWSGGRLVREYSALVDTPRTVAAPAQPPIEAPTVAVPNTIATPATPV
                     AAAPVPAPPPVPAPARPAAEVARPPSPVAPPHPPAAATPE"
     gene            14102..15247
                     /locus_tag="VLM17_02800"
     CDS             14102..15247
                     /locus_tag="VLM17_02800"
                     /inference="COORDINATES: protein motif:HMM:TIGR03505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimV/HubP family polar landmark protein"
                     /protein_id="HSR64519.1"
                     /translation="MRSGDTLAQIAGGLAGGGTLDQAMIALLRANPEAFIDGNINRIK
                     AGAVLRTPSADEVSRIGSGEAAALVHEQIAGWRQARKPIAQPAGNAVAGAAPARPAKA
                     VPPATAADARLEIAPPTSAHAKQAGTRSGLEAGGEGDMLRQQLQETKETLAARDAEVQ
                     ELKTRVAELEKIRQDQQQLIQMKSSALATAQQDLAKSNRAAAAPAGAPATQTQAAGPP
                     PQQQAHGAVWLWSGLGLLLVALGGWLLTRRRLAEAPTPRRFDSAALAASVPPREEPVQ
                     RDAERPVAAPAPARAPQPSPPAKPMPSWHAGQPGAQLDVLLQPEAPAPAVETDAGGPR
                     SAAEQLDLAQAYLDVGDEEAARTLLREVLDGRDPVAREAAARLLREL"
BASE COUNT         2354 a         5479 c         5463 g         2134 t
ORIGIN      
        1 cgcaccaccg tcttcggcaa ccccgccagc gccgccacct gcaggccgaa gctgcggtcg
       61 gccggtccgt ccttgaccgc gtgcatgaac accagcgagt cgccgccgtt ccggtcgtgg
      121 tgctcgaccg catcgaggtg cacgttggcg atgccgctcg ccggttcggc gagcgccgtc
      181 agctcgaagt agtgcgtggc gaacagcgtg tagctgcgat tcgtcgcggc gaggtggcgc
      241 gcgcaggcgt cggccagcgc gagcccgtcg taggtcgacg tgccgcggcc gatctcgtcc
      301 atcagcacca gcgattcgct cgtggcgtga tgcaggatgt aggacgtctc cgccatctcg
      361 accatgaagg tcgactgccc gcgtgcgagg tcgtcgcccg cgccgatgcg ggtgaggatg
      421 cggtcgatcg ggccgatcag ggcgcgcgcg gccggcacga agctgccgat gtgggcgagc
      481 agcacgatca gcgcgttctg ccgcatgtag gtcgacttgc cgcccatgtt cgggccggtg
      541 atgacgagca tgcggcggtt gccgaagtct tccgtgtcgc cgagcaccag gtcgttcggc
      601 tcgaatggtt cgtcgcgcac cgcctccacc acgggatggc ggccgcgctc gatgcacagg
      661 cccggcgcgt cggtcagctc cgggcgcgac cagtccagcg cctgcgcgcg ctcggcgaag
      721 caggccagaa cgtcgacttc gctcagcgcc gccgcacagc gcttgagcgg ctcgagccgt
      781 tcgttgagcg cgtcgagcag gccttcgtac agcagcttct cccgcgccag cgaccgctcg
      841 cgcgccgaca gcaccttgtc ctcgaacgcc ttcagttcct cggtgatgta gcgctcggcg
      901 ccggtcagcg tctgccgccg ggcatagtgc accggcgccc gctcggcctg gcccttgctg
      961 atctcgatga agtagccgtg cacgcggttg tagccgacct tgagcgtcgc gatgccggtg
     1021 gcggcgcgct cgcgcgcctc gaggtcgacg aggaactggt cggcatgcgt cgacagcgtc
     1081 cgcagctcgt cgagttcggc gtcgaagccg tccgcgatga cgcccccgtc gcgcgccagc
     1141 accggcggct gcgccacgat cgcgcggcgg agcaggtccg cgtgctcgtc gtgcgcgccg
     1201 agttcgtcgg ccagcgcctg caggcgcggc gaatccagcg gctgcagcag cgagcgtacc
     1261 gtcggcagca ggccgaggcc gtcgcgcagg gtcgacaggt cgcgcgggcg cgcgctgcgc
     1321 agggcgacgc gcgagaggat gcgctctagg tcgccgagcg cgcggaaggc ctcgcgcagc
     1381 ggcgcgtcgg tgcggtgctc caccagcatc gccaccgcgt gctggcgctc gccgaccacg
     1441 cggcggtcgc gcagcggccg gtgcagccag cgccgcagca ggcggccgcc catcggcgtc
     1501 accgtgctgt cgagcacgcc gagcagggtc gtcctcgcat cgccgtcgac gcgcgtgtcc
     1561 agttcgaggt ggcggcgggt ggcggcgttc atcgcgatcg cgccatcgct cgcttccacc
     1621 gcgatcgcgg tcaggtgcgg cagccgctgc ttctgcgttt cctcgacgta gcccagcagc
     1681 gcgcccgcgg cggcgatcgc gcgcggcctg tcctcgatcc cgaatccggt caggtcgtgc
     1741 agcccgaaga actgcagcag ctggcggcgg ccgctgccgg cgtcgaacag ccacggcgcg
     1801 cgccggcgca cgccattgcg cgcgctcacg gcggcgggcc agccgtcctc gtcggcgatg
     1861 agcacctccg ccggttccag ccgggcgagt tcggcttcca gtgcgtcgtc gccgtcgact
     1921 tcgttgacga ggaaacgccc gcccgcgaga tcggcccagg ccagtccgta gcccccgctc
     1981 ctggcggacg tgccgccgcg cgacaacgcc agcagcagcg tgtcgcgccg ctcgctcagc
     2041 agggcctcgt cggtcaccgt gcccggcgtg acgatgcgca ccaccttgcg ttcgaccagg
     2101 cccttggcga gcgcggggtc gccgatctgc tcgcagatcg ccaccgactc gccgagcgcc
     2161 accagtcgcg cgaggtagcc ctcgcaggca tggaccggca cgccggccat ggggatgggc
     2221 tggccggccg aggcgccgcg ctgggtcagg gtgatgtcga gcagcttcgc cgccttgcgc
     2281 gcgtcgtcgt agaacagctc gtagaagtcg cccatgcgga agaacagcag cacgtccgga
     2341 tgctcggcct tggcggcgaa gaactggcgc atcaggggcg tgtgctgttc ggcagacatc
     2401 cgcatcgaaa tgggctagaa aaggccgcct agtttgccgg agtttccgcc catgtccgcc
     2461 cccgacgacg ccgcgttgca cgcgagggcc gagcggctcg gcgcccgcct gcgcgccgcg
     2521 cgcctgatgc tggtcacggc cgagagctgc accgggggct ggatcgcgaa gaccgccacc
     2581 gagatcgccg gcagctcgga ctggttcgac tgcggcatgg tcgcgtacag ctacgaggcc
     2641 aagcagggcc tgctcggcgt gcggccggaa acgctggagc agttcggcgc ggtcagccgg
     2701 gagaccgtgg tggagatggt ctccggggcg ctggtgcatt cgggcgccag cgtggcggtc
     2761 gcggtcaccg gcatcgccgg tcccggcggc gggacgcccg acaagccggt cggcacggtc
     2821 tggatcgcct ggaagcgtcg cggcggctac cccaccgcgg agctctatca cttcgatggc
     2881 gaccgcgagg cggtccggcg gaagacggtg gcggcggcgc tggaggggct ggaggccctg
     2941 gccgcctagc cgttgacctc cactgcggat tagtagtatt actactaacc atgcagatga
     3001 ccgacaccca gcaggcgatc ctctcgatga tcgccgagcg catcgaggcc gagggcatgc
     3061 cgccctcgca ggcggagatc gcgcgcgcgt tcggcttcaa gggcgtgcgc gcggcgcagt
     3121 accacctgga ggcgctggag gcggcggggg cgatcgaacg cattcccggc cgcgcgcgcg
     3181 gcatccgcgt gcgccagctg ccgccgccgg tgcagccttc gctcgtgctc gccacggccg
     3241 acgacgacac gctgcggctg ccggtgctgg gccaggtcgc ggccggcctg ccgatcggcg
     3301 ccgacatcgg cagcgacgaa gtcgtgctgc tcgaccgcgt gctgttttcg cccgcacctg
     3361 actacatgct caaggtcaag ggcgactcga tgcgcgacga gggcatcttc gacggcgatc
     3421 tgatcggcgt gcaccgcacg cgcgacgccc gctccggcca gatcgtcgtc gcccggatcg
     3481 acgaggagat caccgtcaag ctgctgaaga tcggcaagga tcccgctggc agggaaaggc
     3541 tccggctgct gccccgcaat cccgactatc cgccgatcga agtgcagccg ggccaggact
     3601 tcgcgatcga agggctgtac tgcggcctcg tacgccccag ccggcatccg cggtgagacc
     3661 gatgccggcc gcggcttttt ccgacacgcc ggcgcgcccc cgcgcgatgc cgtccggcga
     3721 gcgtcgatcg caccctgagt ccgcgtggcc cgcccgtctc agcctgcgcg accaccacct
     3781 tccaatctat tccacatacc actgaccacc gaggattcca cgatggacga gaacaagaag
     3841 cgcgcccttg cggcggccct gggccagatc gagaagcagt tcggcaaggg ctcggtcatg
     3901 cgcatgggcg accgcgccgt ggaggccgtc gagatcgtcg gcaccggttc cctgatgctc
     3961 gatatcgcgc tcggcatcgg cggtctgccg cgcggtcgcg tggtcgagat ctacggtccg
     4021 gaatcgtcgg gcaagaccac gctcacgctg caggcgatcg cggaatgcca gaagaaaggc
     4081 ggcaccgcgg ccttcatcga cgccgagcac gcactcgatc cgatctacgc cgcgaagctt
     4141 ggcgtcaacg tcgatgactt gctgctctcg cagccggaca ccggcgagca ggcgctggaa
     4201 atcgccgaca tgctggtgcg ttcgaacgcg gtcgacatgg tggtcgtcga ctcggtcgcc
     4261 gcgctgacgc cgaaggccga aatcgaaggg gagatgggcg accagctgcc gggcctgcag
     4321 gcgcgcctga tgagccaggc gctgcgcaag ctcaccggca acatcaagcg ttcgaacacg
     4381 ctggtgatct tcatcaacca gctgcgcatg aagatcggcg tgatgatgcc gggccagagc
     4441 ccggagacga cgaccggcgg caacgcgctc aagttctacg cctcggtgcg cctggacatc
     4501 cgccggatcg gaacgatcaa gaagggcgag gagatcatcg gcaaccagac ccgcatcaag
     4561 gtggtgaaga acaagctggc gccgccgttc aagcaggtcg tcaccgagat cctctacggc
     4621 gagggcatct cgcgcgaagg cgagctgatc gacatgggcg tggatgccaa gctcgtcgag
     4681 aagtcgggcg cctggtacgg ctacgacggc gagcgcatcg gccagggcaa ggaaaacgcc
     4741 cgccagtacc tcaaggacaa tccagcggtc gccaccaagc tggaagcggc cttgcgcgag
     4801 aagttcgtgc cggccgaggc tccccccgcg ggcgctgggg acgacgacgc ctgagcctcg
     4861 gtagcgcatg tccgacgagc acggcatggg cgacgacgcg gcggagcctg ccgacggcgg
     4921 gacgggagcc ggagggacgg ctcgcggcag gcaggccgcc gacaagccga agcgccgccg
     4981 gcccgaaccc tcgcctgcgc agcgcgcgct tggcctgctg gtccggcgcg agcactccca
     5041 gcgcgagctg acccgcaagc tggtcacgcg cggggttggg gcggatgagg ccgcgggcgc
     5101 ggttgcccgg ttgcgcgagg caggctggca ggacgacacc cgcttcgcct gcagcctcgc
     5161 gcgtacgcgc gcaaccaatg gatacggccc gctgcacatc cgcgcggagc tgcgcacgca
     5221 tgccctgccc gaagccgtgg ttgccagcgc cttcgccgcg ctggccgaag cgggcgagga
     5281 cgactggccc cgccgcgccg cggagctggt gcgacggcgc ttcggcaccg tcgccgggga
     5341 tgcggcgaag gcccgccggg ccgcggatct gcttgcccgc cgcggtttcg atggagacag
     5401 catccgcgcc gcggtgcgtg ggctgcccga cgctttcgat tgaacgaccg caggcgccga
     5461 gtgggcaggg cgcctgccat caacgcttac cctcgtcatc ccggcgcaag ccgggttttt
     5521 ttcgcaggtg ggctgggtgc gtccttcatc cggtgcgccc gggaatggca ttgccggcag
     5581 agtgttttcc gcctgcgccg gcggtgccca cgctccttgc gcgaccgctc gccgcagcgt
     5641 cccgcgcccc ggcctgctac ccttgtcgtt ccccggttga gcgcctgaac cgtgcccgca
     5701 caccgcggga ccggaccgct cccggcgtcc gcctgccagc cgccgaatcc atgaagacca
     5761 ctgccgaaat ccgcagcgat ttcctcgatt tcttccgcgc caaggggcac accatcgtgc
     5821 cgtcggcgcc gctcgtgccg ggtaacgacc cgaccctgct gttcaccaat tcgggcatgg
     5881 tccagttcaa ggacgtgttc ctcggcgccg agaagcgcag ctacgtgcgc gcggccgacg
     5941 tgcagcgctg cctgcgtgca ggtggcaagc acaacgacct cgactccgtc ggctataccg
     6001 cgcgccacca caccttcttc gagatgctcg gcaactggtc cttcggcgac tacttcaaga
     6061 aggaagccat cgcctgggcg tgggagctgc tgaccgatat ctggaagctg ccgcccgagc
     6121 gcctgctggt caccgtctac cacaccgacg acgaggccta cgcgctgtgg cacgacacga
     6181 tcggcctgcc gcccgagcgc atcgtccgca tcggcgacaa caagggcgcg ccgttcgctt
     6241 ccgacaactt ctggcagatg gccgacaccg gtccctgcgg cccgtgcacc gagatcttct
     6301 acgaccacgg cccggacatc gcgggcggcc cgccgggttc cccggacgag gacggggatc
     6361 gctacatcga gatctggaac ctcgtcttca tgcagttcga tcgccaggcg gatggcagcc
     6421 tgcagccgct ccccgcgccg tgcgtcgaca ccggcatggg cctcgagcgc ctgacggcgg
     6481 tgctccagca cgtgcacagc aactacgaga tcgacctgtt ccaggcgttg atccgcaccg
     6541 ccgcgcagct gaccggcacg gccgacctgc acaacaagtc gctgcgcgtg atcgccgacc
     6601 acatccgcgc ctgcagcttc ctgatcgtcg atggcgtgct gccgtccaac gaaggccgcg
     6661 gctacgtgct gcggcggatc atccgccgcg ccatccgcca catctggaag ctcggcgggc
     6721 tgaacgcgga aggcacgttc tggaagatgg tgccgacgct ggtcgaggtg atgggcgacg
     6781 cgtacccgga aatcgtgatc cgccgcgagc tggtcgagcg tgcgctcaag gccgaggaag
     6841 cggcgttcgc gcagacgctc gacgccggca tgcagcggct ggagtcgtac ctgcatcgcc
     6901 acgaaggccg ggtcgacggc gagcagctgt tccagctgca cgacacctac ggctgcccgc
     6961 ccgacctgat cgcggacatc gtccgcgagc gcgaaggcgc cagcctgacg ccgtcggcga
     7021 tgaccgacta cgaccgcctg atggaacagc agcgcgaacg tgcccgtgcc gccggcaagt
     7081 tcggtggcgg cacgacgttg ccggccgaac tggtcgcgca gctgcggccg agcgaattcc
     7141 tcggttatga cgagctcgcc gcgggcgggc tgcaggtcct cgcgctgctg cgcgacggtc
     7201 gcccggtaga ggcgatcgcc gccggcgacg aggccatcgt catcctcgat cgcacgccgt
     7261 tctacgccga gagcggcggc caggtcggcg atgcgggcga gctggccgag cagggggtgc
     7321 gcttcgtcgt gcgcgacacg ctcaagctcg ccggccagtt ccatggccac gccggcgcgc
     7381 tggaggcggg cacgctcaag gtcggcgacc tcctcatggg cgcggtggac gcgccacgcc
     7441 gcgccgccac cgtgctcaac cacagcgcga cccacctgct gcactcggcc ctgcgcagcg
     7501 tgctcggcac gcacgtcacc cagaaggggt cgctggtcgc gcccgaccgc ctgcgcttcg
     7561 acttcgcgca cttccagccg atgacggcgg gcgagctcgc ggccgtcgag cgcatggtca
     7621 acgccgggat ccgcgccaac catgccgcgg aagtccacca catggggatg gacgaggcgc
     7681 tggagttcgg cgcgatggcg ctgttcggcg agaagtacgg cgagcgcgtg cgcgtgctgc
     7741 gcatgggcga tgcatcgacc gaactctgcg gcggcacgca cgtggcgcgc accggcgaca
     7801 tcggcctgtt caagatcgtg tccgaaggcg gcgtttccgc cggcgtgcgt cgcatcgaag
     7861 cggtcaccgg gcagggcgcg ctcgattacg tggaggcgga ggaagcacgc ctggcggaag
     7921 cggcccagct gctcggcggc aatgcgggcg aagtcggcga caaactgcgc gtgctgctgg
     7981 atcggcagaa acggctggag cgcgaactgg aggcgatgaa ggccagggcc gcttccggcg
     8041 ccaccgccga cctcgccgcg caggcggtcg acgtcgccgg catcaaggtg ctggccgcac
     8101 gcctggaagg cttcgacggc aaggccttgc gcgaggccat ggaccgcttc aagcagcagc
     8161 tcggcgatgc ggtgatcgtg ctggcaggca ccgccgaggg caaggccgcg ctggtcgcgg
     8221 gcgtcagcgg cgcggccggc ggccgggtga aggcgggcga gctgctcgcg cacgtggccg
     8281 cgcaggtcaa cggcaagggg ggcgggcgcc cggacatggc gcagggcggt ggcgaggaca
     8341 gcgcggcact gcccgtcgca ctggcgggcg tgcgcgactg ggtggcggcg aagctgggct
     8401 gatcgaaccg cgggtggccg cggctcgacg gcgcggccgg atgggaaggc ctgcccggtc
     8461 ggcgattccc gtcgcgccgc ggcgcgtcac cttgtggcga cgcgcgaacg cgattatgtt
     8521 tgccagcttc ccaacgcaca cagtgccggc gcgtcgcctg tctcaggcaa cggccgccgg
     8581 atcccggaga cctgcatgct gatcctgacc cgccgcgtcg gcgaaaccct gatgatcggc
     8641 gactcggtga ccgtcaccgt gctcggcgtc aaaggcaacc aggtgcggat cggcatcacc
     8701 gcgccgaagg acgtcgcagt gcatcgcgag gagatctacc agcgcatcca gcgcggcgac
     8761 gatggcgaag gcgcgtcccc ggcggggcag gacacccccg ctccctgatt gccggcggca
     8821 ggcattagcc ggtatccttg cgcgctcgca ttcgggcacg aaacggagag ttgcccgaga
     8881 ggccgaaggg gctcccctgc taagggagta tagggtcaaa agctctatcg agggttcgaa
     8941 tccctcactc tccgccactt cccgaacgcg aaaaggattg accggaacct gcgggttccc
     9001 gcacaattcc gcttctgctt catgcgcccg tagctcagct ggatagagca ccaggctacg
     9061 aacttggtgg tcgggagttc gaatctctcc gggcgcgcca tacaagacga agggccggcg
     9121 gttcatccgc cggccctttc gttttttatt gcgtcgcgcg tcgggcaacg gacgatggcg
     9181 gcggtcttcg ccgctgcagg aagcgccttc ggtccggccc cgaacgaagg gtccccggat
     9241 gacgacgtcc gcgagcccgc ccggatcagc ggcggtcggc gccgagcttc tccaggtccc
     9301 ccgcgatcgc cgccggctgc agcggcggca ggatcacgcc cgccatgcgc gcctgcggat
     9361 cgagcaccgc gatgctcgcc gaatggtcga cgctgtactg gtcggcgggc gcgcctgccg
     9421 gtgcgggcac cttcatgaag accatgctga gcgaacgcgc gaaggcttcc agcgacggga
     9481 tgtcgccggt cgccgcgagc gtgtcgcggt ggaagccgtg cgcgtattcg ccggcgcgat
     9541 cgggcgtatc ccgatccgga tccaccgaca cgaacagcac ccgtggccgc gtcgattcgg
     9601 gcaacgccgc ccaccgtttc tgcgcctggg cgagttcggc cagggtggtc gggcagacgt
     9661 cggggcaatg ggtgaagccg aggaacacca gcgtccagtg tcccttgagc tcgcccggca
     9721 ccagcggcgt tccgtcggac tgccgcagcg agaaaggagg cagttcgcgc gactggtcga
     9781 acaaccgcac cgcctgcagc tccggctgcc cggtcgggcc gtggccgagc cagcgctgcg
     9841 cggcccacag gccgaggccg gccgcgagcg cgacggccag gatgacggtg gtggtgcggt
     9901 tgaacatcgg cgcgtttccc taggggcccg tcggcatgcg ttcacgcgct cgcgccgggg
     9961 cggcgcgccc atgatacggg cgcgccgcca tggcgcgccg ctataatctg gccccgcctg
    10021 ccgtgcgcga tcgccatgac cgacgagctc gagacgatca tcgacctgat ccgctatggc
    10081 gccagccgct tcaacgcggc cgggctcacc ttcggacaca gctacgacaa cgcactggac
    10141 gaagcgaccc agctcgtcct gcacgcgctg cacctgccgc atgacctcag cccggtctac
    10201 ggccaggcga aggtgacgct ggccgagaag gaagacgtgc tggcactgtt cctgcgccgc
    10261 atcgaggaac gcgtgccggc cgcctacctg accggcgagg cctggttcgc cggcctcagc
    10321 ttcaggaccg accgccgcgc gctggtgccg cgctcgccga tcgccgaact catcgaggcc
    10381 ggtttcgagc cctggctcgg cggccgcgaa gtggtgcgcg cgctcgacct gtgcacgggc
    10441 tcgggctgca tcgcgatcgc gaccgcccac tacaaccccg actggcacgt cgatgccgtc
    10501 gacctcagcg acgacgcgct cgcgctcgcc gccgagaaca aggcgcgcct gcacgccgac
    10561 aacgtgcgcc tgctgaagtc cgacctgttc tccgcgctgg cgggcgagca ctacgacctg
    10621 atcgtcagca acccgccgta cgtcaccaac gcagaaaccg acgcgctgcc gcgcgaatac
    10681 tcctacgaac ccgagctcgg cctgcgcgcg ggcgacgacg gcctcgacct cgtcctgcgc
    10741 atcctgcgcg acgcgccgct gcacctgacc gagcatggcc tgctggtctg cgaagtcggc
    10801 gaggccgagc acgcgctggt gcagctgttg ccggaactgc cgatggcgtg ggtggagttc
    10861 aaggtcgggc agatgggcgt gttcgtggtc gaacgccacg agctcgccgc gcacaacccg
    10921 cgcatcgccg cgctcgccga cgcacgcgag cgtcgcttcg ccgcgccccc tgcggcgagc
    10981 ctgttttgaa cgtgaccttg gccatggcgt cagcgccttt cgtggtgagc ctgtcgaccc
    11041 atgaacggcc tccgttcacc cttcgacagg cgcagggcga acgggctgcg gaatcccctc
    11101 gccgccgatg aataccttcg gccagctgct gcgcgtgacc acgttcggcg agtcgcacgg
    11161 gcccgcgatc ggctgcgtgg tcgacggctg cccgccgggc atcgcgctgg cgccggagga
    11221 tttcgccgcc gacctcgcgc ggcgagcgac cggacgcacg cgccatacct cgcagcgcca
    11281 cgaggccgac gaggtcgaga tactgggcgg cgtgtacgaa ggccgcacga ccggcacgcc
    11341 gatcgcgttg ctgatccgca ataccgacgc gcgcagcaag gactacgcgg ccatcgccac
    11401 gcagttccgg cccggccacg ccgactacac ctactggcag aaatacgggc accgcgatcc
    11461 gcgcggcggc ggccgcgcct ccgcgcgcga gacgacgatg cgcgtcgccg ccggcgtggt
    11521 cgcgaagaag tggctggccg cacgccacgg cgtgaccgtg cgcggctacc tcgcgcagat
    11581 cggcgaggta ctgccgcggc ggagcgcatg ggcggcggtc gaatccaacc cgttcttctg
    11641 gcccgacgcc gaccaggtgc ccgagctcga ggcctacatg gatgcgctgc gcaagtccgg
    11701 cgactccgtc ggcgcgcgca tcaccgtcgt cgccaccgga gtgccgccgg gctggggcga
    11761 accggtgtac ggcaagctcg acgccgaact ggccgcggcg atgatgtcga tcaacgcggc
    11821 caagggcgtg gaggtcggcg acggcttcgc cagcgtgatg cagaagggca gcgcgcatcg
    11881 cgacgagatg acgccggaag gcttcctttc gaaccatgcc ggcggcatcc tcggcggcat
    11941 ctcgaccggg caggacatcc tggtgtcggt cgcgttcaag ccgacctcca gcctgcgcct
    12001 gcccgcgcgc ggcgtggatg tcgagggcaa cgcggtcgaa gtcgtcacca ccggccgcca
    12061 cgatccctgc gtgggaatcc gcgcggtgcc catctgcgag gcgatgctgg cgctggtgct
    12121 gatggaccag gcgctgcgcc accgcgcgca atgcggcgac gtcggagacg tggcgccgcg
    12181 ggtgccggcg atggccaaac gatagcggcc agtcgaagcg ggcgcccgcg ggcgccggtg
    12241 cgcgactgcg ccgactccga tccggctttc atccaaacag gcaggtccct ggctccgccg
    12301 gggacgacaa caggatttcg gaaaacacat ccatgaccag gcaattcaac gtcgccgtcg
    12361 tcggcgccac cggcgcggtc ggcgaaacca tgctcgccat cctcgccgag cggaagttcc
    12421 ccatcgccag catcgtcgcg ctcgccagcg agcgctcggc cggcggcaag gtgaagttcg
    12481 gcaaccgcga catcgtcgtg caggacctcg ccgccttcga ccccggcggc atcgacatcg
    12541 cgctgttcgc cgcggggggg tcgatctcga aggaatacgc cccgaagttc gccgccgccg
    12601 gcgcggtggt gatcgacaac agctccacct tccgctacga cgacgacgtc ccgctggtgg
    12661 tggcggaagt gaatcccgag caggtgcgca accgcccgcg cggcatcatc gccaacccga
    12721 actgctcgac catgcagatg gtggtcgcgc tcaagcccat cttcgatgcg gccggcatcg
    12781 agcgcatcaa tgtcgccacc taccagtcgg cctcgggcgc cgggcgctcg ggcctggagg
    12841 agctcggccg ccagacggcc ggcatcctca acttccagga tgcgcagccc aagcgcttcc
    12901 aggtgcagat cgccttcaac ctgatcccgc acatcgacga cttccaggac aacggctaca
    12961 ccaaggagga aatgaagctg gtgtgggaga cgcgcaagat cctcggtgac gacggtatcc
    13021 aggtgaaccc gacggcggtg cgcgtgccgg tgttctacgg ccattccgaa gccgtcaacg
    13081 tcgagacgaa gaagaagatc agcgccgccg aagtccgcaa gctgctggaa aaggcgcccg
    13141 gcgtcgtggt ggtcgacgaa gcggtgccgg gcgggtatcc gaccccggtc acccacgcct
    13201 cgggcaccga cccggtgtac gtcggccgca tccgcgacga cttctcgcac ccgcgcgcgg
    13261 tgaacctgtg ggtcgtgtcc gacaacatcc gcaagggcgc ggcgctgaac gcggtgcagg
    13321 tggccgagct ggtggccgcc gaaggctgac ggtcccggcg gcccgctccc gcgcgaaacg
    13381 ggctgtggtc cgcgaaaaac gtttgccgat tccccgcgcg caaggctaga gtcgcgcggg
    13441 gagttccgcg ggggtgctcg tgaacaacac actgcgtcgt gcactggcca tcgcgctcgc
    13501 gatcgccgcc gggcctgctt cggcgctggg cctgggccag atccaggtga agtcgcagcc
    13561 cggccagccg ttgctggccg agatcccgat cgtctccagc gacccttccg agctgcaggg
    13621 cctgcaggtg cagctggcgt cgcccgagac gttccggcgc atcggcctgg agccgccgca
    13681 gggggatgtc agccagctgc atttcgagcc ggcgatcgac gcccagggcc ggccggtgat
    13741 ccgcatcacc agcccggcgc cggtgcagca gccgctgctg accttcctgc tggaggtcga
    13801 ctggagcggc gggcggctgg tgcgcgaata ctccgcgctg gtcgacacgc cgcgcaccgt
    13861 cgccgcgccg gcacagccgc cgatcgaggc gccgacggtc gccgtgccca ataccatcgc
    13921 gacgccagcg actccggtcg cggccgcgcc ggttccggcg ccaccgcccg tgccggcgcc
    13981 ggccaggccg gcagccgagg tcgcgcggcc gccatcgccc gtggcgccgc cacatcctcc
    14041 cgccgccgcc accccggaat aggcgcggac ggcggttgcg cccgcgcggg gcgactatcg
    14101 cgtgcgcagc ggggacacgc tggcgcagat cgccggcggc ctggcgggcg gcggcacgct
    14161 ggaccaggcg atgatcgcgc tgttgcgcgc caatcccgaa gccttcatcg acggcaacat
    14221 caaccggatc aaggctggcg cggtgctgcg cacgccgagc gcggacgagg tgtcgcgcat
    14281 cggctcgggc gaagccgcgg cgctggtcca cgaacagatc gccggctggc ggcaggcgcg
    14341 caagccgatc gcgcagcccg cgggcaatgc ggtggccggt gcggcgccgg cgcggcctgc
    14401 gaaggccgtg ccgccagcga ccgccgccga cgcacggctg gaaatcgcgc cgccgacgtc
    14461 ggcgcatgcg aaacaggcag gcacacggtc cggcctcgag gccggcggcg agggtgacat
    14521 gctccgacag cagttgcagg aaacgaagga aacgctcgcc gcgcgcgatg cagaggtgca
    14581 ggagctgaag acgcgcgtcg ccgagctgga gaagatccgg caggaccagc agcagctgat
    14641 ccagatgaag agcagcgcgc tcgccaccgc ccagcaggac ctggccaagt ccaatcgcgc
    14701 cgccgcggcc cccgcgggcg caccggccac gcagacccag gcggctgggc cgccgccgca
    14761 gcagcaggcg cacggcgcgg tgtggctgtg gtccggcctc ggcctgctgc tggtggcgct
    14821 tggcggctgg ttgctcaccc gccgcaggct ggccgaagcg cccacgccac gtcgcttcga
    14881 cagcgcggcg ctcgccgcca gcgtgccgcc gcgcgaggag cccgtgcagc gcgatgcgga
    14941 gcgaccggtc gcggcgccgg cgcctgcgcg cgcgccgcag ccgtccccgc ccgccaagcc
    15001 gatgccgagc tggcatgccg gacagcccgg cgcgcagctc gacgtgctcc tgcagccgga
    15061 ggcgccagct ccggcggtcg aaaccgatgc cggcggcccg cgttcggcgg ccgagcagct
    15121 cgacctcgcc caggcctatc tcgacgtcgg cgacgaggag gccgcgcgca cgctgctgcg
    15181 cgaggtcctc gatggccgcg acccggtcgc gcgcgaggcc gccgcccgcc tgctgcgcga
    15241 actgtaagca cgacggggtt tgcgatgcgg ttcgcgctcg gcgtcgagta cgacggcggc
    15301 ggcttctccg gctggcagcg gctgagccgt ccgggcgaac ccgaccgtcg cggcgaaccg
    15361 accctgcagg cggccctgga ggcggcgctg tccttcgtcg ccggccatcc ggtcgagacc
    15421 gtgtgcgccg
//
LOCUS       DATIQC010000132         2305 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_291595, whole genome shotgun sequence.
ACCESSION   DATIQC010000132 DATIQC010000000
VERSION     DATIQC010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291595"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VLM17_02805"
     CDS             complement(<1..449)
                     /locus_tag="VLM17_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HSR64520.1"
                     /translation="MKASGTTADAIAFVGGGNMARSLIGGLLSRGGNPVAIRVAEPVP
                     ALRDGLGHAFGVQTFADNADAVAGARTWVLAVKPQVMRAVCEALAPLARSQRPLVVSI
                     AAGITSAQLARWLGGDVAVVRTMPNTPALLGAGVTGLFANAGVDAAGR"
     gene            complement(446..1117)
                     /locus_tag="VLM17_02810"
     CDS             complement(446..1117)
                     /locus_tag="VLM17_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HSR64521.1"
                     /translation="MQTLLQRLDNAARAAGRPAPRLLAVSKRQAATAVAELHAAGQRA
                     FGENYVQEAIAKQAALAGLDIEWHLVGHLQSNKAAEAAARFDWVQTLDRTRLVPALAR
                     HRPQARGPLNVLIQVNIDDEASKHGCEPDAVDALAAAVAAEPALRLRGLMAIPAPFED
                     PARRREAFRRMRALFDALRARHPSVDTLSMGMSDDLESAIAEGATLVRIGTALFGARP
                     PKETT"
     gene            1253..2290
                     /locus_tag="VLM17_02815"
     CDS             1253..2290
                     /locus_tag="VLM17_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HSR64522.1"
                     /translation="MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDH
                     KQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPGLARFRVNAFNQNRGAGAVFRTIPSE
                     VLTLEDLGCPRIFKELIDQPQGLILVTGPTGSGKSTTLAAMLDHVNKNEYAHILSVED
                     PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDYILVGEMRDIETIRLALTAA
                     ETGHLVFATLHTSSAAKTIDRIIDVFPAGEKPMVRSMLSESLRAVISQALLKKTGGGR
                     TAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQAGMMTLDQHLQDLVKRSMITRQQA
                     KVYAKDKRLFE"
BASE COUNT          364 a          830 c          791 g          320 t
ORIGIN      
        1 cggcccgcgg cgtccacgcc cgcattcgcg aacagcccgg tcacgccggc accgagcagc
       61 gccggcgtgt tcggcatcgt gcgcaccacc gcgacgtcgc cgccgagcca gcgcgcgagt
      121 tgcgccgagg tgatgccggc cgcgatcgaa accaccagcg gccgctgcga ccgcgccagc
      181 ggcgccagcg cctcgcagac cgcgcgcatc acctgcggct tgaccgcgag cacccaggtg
      241 cgcgcgccgg cgacggcgtc ggcgttgtcg gcgaaggtct gcacgccgaa ggcgtgcccg
      301 aggccatcgc gcagcgccgg caccggctcg gcgacgcgga tggcgaccgg attcccgccc
      361 cgcgacagca ggccgccgat gaggctgcgc gccatgttgc cgccgccgac gaaggcgatc
      421 gcgtccgcgg tggtgcctga agccttcatg tcgtttcctt gggagggcgg gcgccgaaca
      481 gggcggtgcc gatgcggacc agggtggcgc cctcggcgat cgcggattcg aggtcgtcgc
      541 tcatgcccat cgagagcgtg tcgacggacg ggtggcgcgc acgcagcgca tcgaacagcg
      601 cgcgcatgcg gcggaaagcc tcgcgccggc gcgccggatc ctcgaagggc gccgggatcg
      661 ccatcaggcc gcgcaggcgc aacgccggtt cggcggcgac cgcggccgcc agcgcgtcga
      721 ccgcatccgg ttcgcagccg tgcttgctcg cctcgtcgtc gatgttcacc tggatgagca
      781 cgttcagcgg cccgcgcgcc tgcgggcggt ggcgggccag cgccgggacc aggcgcgtgc
      841 gatccagcgt ctgcacccag tcgaagcgcg cggccgcttc ggcggccttg ttcgactgca
      901 ggtggccgac caggtgccac tcgatgtcca gcccggccag cgcggcctgc ttggcgatgg
      961 cttcctgaac gtagttttcg ccgaacgcgc gttgcccggc cgcatgcagt tccgcgaccg
     1021 cagtcgcggc ctgccgcttg gacacggcca ataatcgtgg cgctggccgt ccggccgcac
     1081 gcgccgcgtt atcaagtcgt tgcagcaggg tctgcagggc gtccgcgagc acggcggggg
     1141 tccagtggcg gcgggttgac gtcccaatcg gggcgtccat actgccgtcg gggtaggtcg
     1201 tttgccagtc ggcgcccgcc ggcggcccgt cgtggtgggg agcacgcaaa agatggatat
     1261 cgccgagcta ttggcgttct cggtcaagaa caaggcctcg gacctgcacc tgtccgccgg
     1321 cctgccgccg atgatccgcg tggacggcga cgtccgccgc atcaacatcc cggcgctcga
     1381 ccacaagcag gtgcacgcgc tggtgtacga catcatgtcg gacaagcagc ggcgcgacta
     1441 cgaggaattc ctcgaggtcg acttctcgtt cgagatcccc ggcctcgccc gcttccgcgt
     1501 caacgccttc aaccagaacc gcggcgccgg cgcggtgttc cgcaccattc cgtccgaagt
     1561 gctcacgctc gaggacctcg gctgcccgcg catcttcaag gaactgatcg accagccgca
     1621 gggcctgatc ctggtcaccg gcccgaccgg ctcgggcaag tcgaccacgc tcgcggcgat
     1681 gctcgaccac gtcaacaaga acgaatacgc gcacatcctc tcggtcgagg atccgatcga
     1741 gttcgtgcac acctcgcaga agtgcctgat caaccagcgc gaggtgcacc gcgacaccca
     1801 cggcttcaac gaggcgctgc gctcggcgct gcgcgaggac ccggactaca tcctggtcgg
     1861 cgagatgcgc gacatcgaga cgatccgcct cgcgctgacc gccgcggaga ccggccacct
     1921 ggtgttcgcg accctgcaca ccagctcggc ggcgaagacc atcgaccgca tcatcgacgt
     1981 gttcccggcc ggcgagaagc cgatggtgcg ctcgatgctg tccgaatcgc tgcgcgcggt
     2041 gatctcgcag gcgctgctga agaagaccgg cggcggccgc accgcggcgt gggaaatcat
     2101 ggtcggcacc ccggccatcc gcaacctgat ccgcgaggac aaggtcgcgc agatgtactc
     2161 ggccatccag accggccagc aggccggcat gatgaccctc gaccagcacc tgcaggacct
     2221 cgtgaagcgc agcatgatca cgcgccagca ggccaaggtc tacgccaagg acaagcgact
     2281 gttcgagtga cgggccgcgc gcccg
//
LOCUS       DATIQC010000133         2119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_432769, whole genome shotgun sequence.
ACCESSION   DATIQC010000133 DATIQC010000000
VERSION     DATIQC010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432769"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..844
                     /locus_tag="VLM17_02820"
     CDS             <1..844
                     /locus_tag="VLM17_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSR64523.1"
                     /translation="LLEAGQDADAMQALDGAHRLLRTPLDAGELIEAVESLSELRELL
                     DNPELKQRIGSIGSLPPPPRVYIELTQLLRDPDSSNAEIADVLAQDPAIAAKVLRLCN
                     SAYFSGGRVITDFRAAVTRLGHQQISRLVLASETFGSIQSANGVDREALQDRALRTSR
                     IAGRLLAGSSAELAATAGLLAEVGLLLPGIRPDGDGPHYAEAGAYLLGLWGLPMPIVE
                     AVAHHHRPARMRSGGFWVTGAVHVASALVTGKEVDEAYLRTVGVHDKLPRWRDMAAQL
                     ADAA"
     gene            complement(858..1784)
                     /locus_tag="VLM17_02825"
     CDS             complement(858..1784)
                     /locus_tag="VLM17_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSR64524.1"
                     /translation="MRARLALAILAFALLPPPAGAAHVYRWTDHAGVVHYGDRAPDAA
                     KVQARDLRVIPVRAEPGAVVRLRVEGDGSGNYAAWADNTLAGPLEVMLRFSRGSNVAG
                     DPALPADAVVPARGSVRVARIGAVDPARAGEFELQLDAMPGDPSARPRDVVYQLPLRQ
                     RASRIDQGYGGRFSHTDPQNLYAVDFAADIGTPVLAARDGVVMQVESDFDKAGLNMEK
                     YGGRANFVRILHDDGTMGLYAHLQEGGALVRLGQRVRAGQQIGLSGNTGFTTGPHLHF
                     AVQVNRGMRLQALPFRMAGPAGPLSIPGVAAR"
     gene            complement(1794..>2119)
                     /locus_tag="VLM17_02830"
     CDS             complement(1794..>2119)
                     /locus_tag="VLM17_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64525.1"
                     /translation="AYDADGHAARALPPASGLALWACPEGGGYWLLAAPDGGVTLFDR
                     ADFAPRGRFRDAAGRPLRALDLHAAGTPRFPAGALYATTGDAQLAFDLRAIATTLDLS
                     PDCVQ"
BASE COUNT          275 a          775 c          809 g          260 t
ORIGIN      
        1 gctgctcgaa gcgggacagg acgccgacgc gatgcaggcg ctcgacggcg cgcatcgcct
       61 gctgcgcacg ccgctcgatg ccggcgagct gatcgaggcg gtggagagcc tgtccgagct
      121 gcgcgagctg ctcgacaacc ccgagctgaa gcagcgcatc ggcagcatcg gctcgctgcc
      181 gccgccgccg cgcgtgtaca tcgagctgac ccagctgctg cgcgaccccg actccagcaa
      241 cgccgagatc gccgacgtgc tggcgcagga cccggcgatc gcggccaagg tgctgcggct
      301 gtgcaactcg gcctattttt ccggcggccg cgtgatcacc gacttccgcg ccgcggtgac
      361 ccgcctgggc caccagcaga tcagccggct ggtgctggcg agcgagacct tcggctcgat
      421 ccagtcggcc aacggcgtcg accgcgaggc gctgcaggac cgcgcgctgc gcacctcgcg
      481 catcgccggg cgcctgctcg ccggatcgag cgcggagctc gcggcgaccg cgggcctgct
      541 cgccgaggtc ggcctgctgc tgccgggcat ccgtcccgac ggcgacggcc cgcactacgc
      601 ggaggccggc gcctacctgc tcggcctgtg gggcctgccg atgccgatcg tcgaggcggt
      661 cgcgcaccac catcgtccgg cgcgcatgcg ttcgggcggc ttctgggtga ccggcgcggt
      721 gcacgtcgcg tccgcgctgg tgaccggcaa ggaagtcgac gaggcctacc tgcgcaccgt
      781 cggcgtgcac gacaagctgc cgcgctggcg cgacatggcc gcgcaactgg ccgacgcggc
      841 ctgaggccgc gcggcgctca gcgcgccgcc acccccggaa tcgacagcgg cccggccggg
      901 ccggccatgc ggaaggggag cgcctgcagc cgcatgccgc gattgacctg caccgcgaag
      961 tgcaggtgcg gcccggtggt gaagccggtg ttgcccgaca acccgatctg ctggccggcc
     1021 cgcacgcgct ggcccagccg caccagcgcg ccgccttcct gcaggtgcgc gtacagcccc
     1081 atcgtgccgt cgtcgtgcag gatgcgcacg aagttggcgc ggccgccgta cttttccatg
     1141 ttgagcccgg ccttgtcgaa gtcgctctcg acctgcatca ccacgccatc gcgcgcggcc
     1201 agcaccggcg tgccgatgtc ggcggcgaag tcgaccgcgt agaggttctg cggatcggtg
     1261 tggctgaagc gcccgccgta gccctggtcg atgcggctgg cgcgctggcg cagcggcagc
     1321 tggtagacga catcgcgcgg tcgcgccgac gggtcgcccg gcatcgcgtc gagctgcagc
     1381 tcgaactcgc cggcgcgcgc cgggtcgacc gcgccgatgc gcgccacgcg cacgctgccg
     1441 cgcgcgggca cgacggcatc ggcgggcagc gccgggtcgc cggcgacgtt gctgccgcgg
     1501 ctgaagcgca gcatcacctc gagcggcccg gcgagggtgt tgtccgccca cgccgcgtag
     1561 ttgccgctgc cgtcgccttc cacccgcagc cgcaccaccg cgccgggttc cgcgcgcacc
     1621 gggatcacgc gcaggtcgcg ggcctgcacc ttggccgcgt cgggcgcgcg gtcgccgtag
     1681 tggacgacgc cggcatggtc ggtccagcgg tacacgtgcg cggcgccggc gggcggcggc
     1741 agcagggcga acgcgaggat ggcaagggcg aggcgggcgc gcatcggaca aggctactgc
     1801 acgcagtccg gggagaggtc gagtgtcgtc gcgattgcgc gcaggtcgaa ggcgagctgc
     1861 gcgtcgccgg tggtggcgta cagggcgccg gcgggaaaac gcggcgtgcc ggcggcgtgc
     1921 aggtccaggg cgcggagcgg gcggccggcg gcatcgcgga agcggccgcg cggcgcgaaa
     1981 tccgcgcggt cgaacagcgt cacgccgcca tcgggcgcgg cgagcagcca gtagccgccg
     2041 ccttcgggac aggcccacag cgcgaggccg gatgccggcg gcagcgcgcg ggcggcgtgg
     2101 ccatcggcgt cgtacgcct
//
LOCUS       DATIQC010000134         1947 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_291702, whole genome shotgun sequence.
ACCESSION   DATIQC010000134 DATIQC010000000
VERSION     DATIQC010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291702"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VLM17_02835"
     CDS             <1..247
                     /locus_tag="VLM17_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase"
                     /protein_id="HSR64526.1"
                     /translation="GRAERDLRIVCGHWSSLGLFVGLGVHAIDTGAVWGGQLTALQLD
                     SEELRIVQVKGRDVPASPPRPPRRRRGPREGARRQSR"
     gene            344..1420
                     /locus_tag="VLM17_02840"
     CDS             344..1420
                     /locus_tag="VLM17_02840"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014402673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HSR64527.1"
                     /translation="MKTDAYGASAADRPLEAMRIERRAPGPRDVQIDIAYCGVCHSDL
                     HTVRSEWGGTRYPCVPGHEIVGHVSAVGEAVAGFKAGDTVGVGCLVGSCQHCHACAEG
                     LEQYCENGFAGTYNSRTADPPGHTLGGYSRRIVVDERFVLRIRHPREQLAAVAPLLCA
                     GITTYSPLRHWRAGPGSKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSENKRRDAHAL
                     GAHEVVNSRNLEEAKLHRGSFDFILDTVAASHDLDLFTGLLKRDGTLCLVGVPEHAHP
                     SPGVGQLIFGRRAIAGSLIGGIAETQEMLDFCAERGIVADIEVIPVQQIDAAYDRMQR
                     SDVRYRFVIDNASLGAGAPAQARA"
     gene            complement(1405..1896)
                     /locus_tag="VLM17_02845"
     CDS             complement(1405..1896)
                     /locus_tag="VLM17_02845"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HSR64528.1"
                     /translation="MTALALIAALDRGHAIGRGNALPWHLPDDLKRFKALTLGKPVLM
                     GRRTAESLGRALPGRRNLVLTRGGRVPFDGMEAVASLAAALDAVAGAEELCVIGGGEV
                     FAETLPLAARMHLTWVDTVVDGADAFFPRFDASQWRPTARAAHAADARHAFAFEFVDY
                     ARA"
BASE COUNT          283 a          711 c          701 g          252 t
ORIGIN      
        1 ggggcgcgcg gagcgcgacc tgcgcatcgt ctgcggccac tggtcctcgc tcggcctgtt
       61 cgtcggcctc ggcgtccacg cgatcgacac cggcgcggtg tggggcggcc agctcaccgc
      121 gctgcagctg gacagcgagg aactgcgcat cgtccaggtg aagggccgcg acgtgccggc
      181 cagtccgccc aggccaccgc gacgccggcg cggcccgcgt gaaggcgcgc gccggcagtc
      241 gcgatagcgg ccggcatcat ccgccgatga cgccacgcgc cgtcgaatgg ctggcccctc
      301 gccgcgcgca ggcgcgacgg ccgcgcaacg acggagcgac cgtatgaaaa ccgatgccta
      361 cggcgcgtcc gccgccgacc ggccgctcga agcgatgcgc atcgaacggc gtgcacccgg
      421 cccgcgcgac gtgcagatcg acatcgccta ctgcggcgtc tgccattcgg acctgcacac
      481 cgtgcgttcg gaatggggcg ggacccgcta tccctgcgtg ccggggcacg agatcgtcgg
      541 ccacgtctcc gcggtcggcg aggcggtggc cggcttcaag gccggcgaca ccgtcggcgt
      601 cggatgcctg gtcggcagct gccagcactg ccacgcctgc gcggagggcc tggagcagta
      661 ttgcgagaac ggcttcgccg ggacgtacaa cagcaggacc gcggatccgc ccgggcacac
      721 cctcggcggc tattcccggc ggatcgtggt cgacgaacgg ttcgtgctgc gcatccgcca
      781 tccgcgcgaa cagctggccg cggtcgcgcc gctgctctgc gcgggcatca ccacctattc
      841 gccgctgcgg cactggcggg ccggacccgg cagcaaggtc ggggtcgtcg gcatcggcgg
      901 cctcggccac atgggcatca agctcgcgca cgcgatgggc gcgcacgtgg tcgccttcac
      961 cacctcggaa aacaagcgcc gggatgcgca cgcgctgggc gcgcacgagg tggtcaattc
     1021 gcgcaacctg gaggaagcga agctgcatcg cggcagcttc gacttcatcc tcgacaccgt
     1081 cgccgcgagc cacgacctcg acctgttcac cggcctgctg aagcgcgacg gcacgctgtg
     1141 cctggtcggc gtgcccgagc acgcgcatcc gagcccgggc gtcggccagc tgatcttcgg
     1201 ccgccgtgcg atcgccggct ccctgatcgg cggcatcgcc gagacgcagg agatgctcga
     1261 cttctgcgcc gagcgcggca tcgtcgccga catcgaggtg atcccggtgc agcagatcga
     1321 tgccgcctac gaccgcatgc agcgcagcga cgtcaggtac cgcttcgtga tcgacaacgc
     1381 gtcgctgggc gccggcgccc ccgctcaggc gcgcgcgtag tcgacgaact cgaacgcgaa
     1441 cgcgtggcgc gcatccgccg cgtgggcggc gcgtgcggtc ggccgccact gcgacgcgtc
     1501 gaagcgcggg aagaaggcat ccgcgccgtc gaccaccgtg tcgacccagg tgaggtgcat
     1561 gcgcgcggcg agcggcagcg tttcggcgaa cacttcaccg ccgccgatca cgcacagctc
     1621 ctccgcgccg gccaccgcgt cgagcgcggc ggccagcgaa gcgaccgctt ccatgccgtc
     1681 gaacggcacg cggccgccgc gggtgagcac caggttgcgc cggcccggca gcgcgcggcc
     1741 gagcgattcg gcggtgcgcc gccccatcag caccggcttg ccgagggtca gtgccttgaa
     1801 gcgcttgagg tcgtcgggca aatgccatgg cagggcattg cccctgccga tcgcgtggcc
     1861 gcgatcgagc gcggcgatga gcgcgagcgc ggtcactgct gggccgcggc caggtccagg
     1921 gtgctgccgg ggatggacgc acacctg
//
LOCUS       DATIQC010000135         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_256373, whole genome shotgun sequence.
ACCESSION   DATIQC010000135 DATIQC010000000
VERSION     DATIQC010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256373"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1605)
                     /locus_tag="VLM17_02850"
     CDS             complement(<1..1605)
                     /locus_tag="VLM17_02850"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR64529.1"
                     /translation="MGEQHRLAQSLQREEAVAQATLLAVADGVVACDASRRITDFNPV
                     AEELTGWPRAEALGQPVQQVLRLRAIEGDAAVPLPLELAIAGNRAAAVADAALLLRRD
                     GSSVPVQASAQPVCDAGGNVCGGLMAFRQVNEVRAMAQKMSHLAQHDYLTDLPNRVLL
                     QDRLSQALATVDRGGKGALLFLDLDFFKQINDSIGHHAGDHVLKEIARRLKENVRADD
                     TVSRQGGDEFVLLLVRLADPRDAARVAEKLIQSIEQPIDFEGQALRVSASIGIALFPQ
                     DARDTQTLMKQADTALYHAKESGRGRYSYFTGIMSAKAEQRLRVEHDLRFALANQDFF
                     LAYQPKVTLPDGRITGIEALVRWRRCDTGEVVPPAEFIPIAEETGLITQIDEWVMREA
                     CRQNMAWQAAGLPAVPVSVNVSLARFDPDRLLAHVEDVLAASGMAPRWLEIEFTEGEM
                     FHNLERAQALIAQLKALGVQVAIDDFGTGYSGLSYLMRYRFDVLKIDRSFVQGLPDDP
                     RNTAIVQAIVAMARALDYRVVAEGVET"
BASE COUNT          223 a          564 c          578 g          247 t
ORIGIN      
        1 ggtctccacg ccctcggcga ccacgcggta gtccagcgcg cgcgccatcg ccacgatcgc
       61 ctgcacgatc gcggtgttgc gcggatcgtc cggcaggccc tgcacgaagg accggtcgat
      121 cttgagcacg tcgaagcggt agcgcatcag gtagctcagg ccggagtagc cggtgccgaa
      181 gtcgtcgatc gccacctgca cgcccagcgc cttgagctgc gcgatcagcg cctgcgcgcg
      241 ctcgaggttg tggaacatct cgccttcggt gaactcgatc tccagccatc gcggcgccat
      301 cccggaggcc gcaagcacgt cctcgacgtg ggccagcagg cggtcgggat cgaagcgggc
      361 gagcgacacg ttcacggaaa ccgggaccgc ggggaggccg gccgcctgcc acgccatgtt
      421 ctggcgacag gcctcgcgca tcacccattc gtcgatctgg gtgatcaggc cggtctcctc
      481 cgcgatcggg atgaactcgg cgggcggcac cacctcgccg gtgtcgcagc ggcgccagcg
      541 caccagcgcc tcgatgccgg tgatgcggcc gtcgggcagc gtgaccttgg gctggtaggc
      601 caggaagaaa tcctggttgg ccaaggcgaa gcgcaggtcg tgctcgacgc gcaggcgctg
      661 ctcggccttc gcgctcatga tcccggtgaa gtagctgtag cgcccgcgcc cggattcctt
      721 ggcgtggtag agcgcggtgt cggcctgctt catcagcgtc tgggtgtcgc gcgcgtcctg
      781 cgggaacagc gcgatgccga tgctggccga gacgcgcagc gcctggccct cgaaatcgat
      841 cggctgctcg atcgactgga tcagcttctc ggccacgcgc gcggcatcgc gcgggtcggc
      901 caggcgcacc agcagcagca cgaactcgtc gccgccctgc cggctgaccg tatcgtcggc
      961 gcgcacgttc tccttcagcc ggcgcgcgat ctccttcaga acgtggtcgc cggcgtggtg
     1021 gccgatgctg tcgttgatct gcttgaagaa gtcgaggtcg aggaacagca gcgcgccctt
     1081 gccgccgcgg tccaccgtgg ccagcgcctg gctcaggcgg tcctgcagca gcacgcggtt
     1141 gggcaggtcg gtgaggtagt cgtgctgggc gaggtgcgac atcttctgcg ccatcgcccg
     1201 cacttcgttg acctggcgga aggccatcag gccgccgcag acgttgccgc cggcgtcgca
     1261 caccggctgc gcggacgcct gcacgggcac gctgctgccg tcgcggcgca gcagcagggc
     1321 cgcgtcggcc accgccgcgg cgcggttgcc ggcgatggcg agttcgagcg gcagcggcac
     1381 cgcggcgtcg ccctcgatgg cgcgcaggcg cagcacctgc tgcacgggct ggcccagcgc
     1441 ttcggcacgc ggccagccgg tcagttcctc ggcgaccggg ttgaaatcgg tgatgcggcg
     1501 cgaggcgtcg caggcgacca cgccgtcggc gaccgccagc agggtcgcct gcgcgaccgc
     1561 ttcctcgcgc tgcagggact gtgcgaggcg atgctgctcg cccacgtcct gc
//
LOCUS       DATIQC010000136         7787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_397699, whole genome shotgun sequence.
ACCESSION   DATIQC010000136 DATIQC010000000
VERSION     DATIQC010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7787
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397699"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1374)
                     /gene="bioA"
                     /locus_tag="VLM17_02855"
     CDS             complement(<1..1374)
                     /gene="bioA"
                     /locus_tag="VLM17_02855"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HSR64530.1"
                     /translation="MHAPTPPPIIADAADWRSRDLAVLWHPCTQMREHLAGDVMPLVP
                     VARGEGAWLVGQDGRRYLDAVSSWWTNLFGHAEPRIAAAIGAQAQRLEQVILAGFSHE
                     PAVELAEKLLALAPREQDRAPLAKVFYADNGSAGVEVALKMAFHWFRNRGEPKRTRFV
                     ALENGYHGETLGALAVGDVPLYRRVYAPLLCEALFTPSPDAYLAEAGETPAQCAQRAA
                     DALAALLERHAGEVCALILEPRVQCAGGMRMHDPLYLRRARELCDAHGVFLIADEIAV
                     GFGRTGTLFACEQAPAAARGVPDGIQPDLLCLSKGLTGGFLPLAAVLATQAIYDGFLD
                     DSRERAFLHSHSYTGNPLACAAALASLAIFDSDDVLARNRGTAARMAALAAPLAALPH
                     VADVRQAGMILAFELAKEGDRHRPFDPALRVGLRAYRAALQRGVVLRPLGDILYWMPP
                     YCVDQAQL"
     gene            1514..2065
                     /gene="nudE"
                     /locus_tag="VLM17_02860"
     CDS             1514..2065
                     /gene="nudE"
                     /locus_tag="VLM17_02860"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HSR64531.1"
                     /translation="MSHRLPTIHRITEHDAGPYRMERLDLEFGNGERRLYERLHSRGH
                     GAVLVVPLLDDDTVLLVREYAAGVHRYELGLVKGRIDAGEAPLEAANRELQEEAGYAA
                     RSLVLLRSLTLSPSYMSHSAHVVVARDLYPQRLPGDEPEELEVVPWKLDALHALALRE
                     DCSEGRSLAALFITREWLRHGDA"
     gene            2067..2870
                     /gene="cysQ"
                     /locus_tag="VLM17_02865"
     CDS             2067..2870
                     /gene="cysQ"
                     /locus_tag="VLM17_02865"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HSR64532.1"
                     /translation="MKALREAVIGIAHEAAARILEVYDSDFAVQHKDDRSPLTAADLA
                     AHRCIVDALEQLTPDIPVLSEESAEDVPGLVRREWRRLWLVDPLDGTREFVKRNGEFT
                     VNIALVEDGEVVLGVIQAPVTGEVWHAQRDIGAFLREGDADIALGPRRPAPQPLRVAA
                     SRSHRDARTEAFIGRMGQVEEVNLGSSLKFCRLAEGGLDVYPRFGPTSEWDTAAGQCI
                     LEAAGGMVVDPKGRPLRYNQRDTLLNGDFLALGDPGLPWRQWLAAQDGP"
     gene            2867..3691
                     /gene="mazG"
                     /locus_tag="VLM17_02870"
     CDS             2867..3691
                     /gene="mazG"
                     /locus_tag="VLM17_02870"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009600531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HSR64533.1"
                     /translation="MIRDAPDIGELLAIMARLRDPRRGCPWDVAQTFATIAPYTIEEA
                     YEVADAIDRGDLQALRDELGDLLLQVVFHARMAEEQGAFAFADVVAAICDKMVRRHPH
                     VFADARVGDAHAQTRAWEEHKRREREAAGHGDGSALAGVARGLPEWQRALKLQKKAAR
                     VGFDWPGPEPVIAKLHEEIDEVRAEFAARDAAPEDARVQERLEDEIGDLLFVCANLAR
                     HARVDVGSALRRANLKFERRFRAMESLAAADGQDLSTLPLEAQDAYWDRAKAAERA"
     gene            3801..4103
                     /locus_tag="VLM17_02875"
     CDS             3801..4103
                     /locus_tag="VLM17_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF962 domain-containing protein"
                     /protein_id="HSR64534.1"
                     /translation="MRRFASFREFYPFYLGEHANRVSRRLHFAGGCGVLVLAAVGLWQ
                     RDAWWLLAAPACGYGCAWAGHFFFEKNRPATFRHPFYSFAGDWVMFVDILRGRVRL"
     gene            complement(4122..4469)
                     /locus_tag="VLM17_02880"
     CDS             complement(4122..4469)
                     /locus_tag="VLM17_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HSR64535.1"
                     /translation="MPALLDRLLPVLLLLGSNVFMTFAWYGHLKYRSAPLLLVIVVSW
                     GIAFFEYTLQVPANRLGSAVYSAPQLKGMQEVITLLVFAGFSVWYLGQPLRWNHWAGF
                     GLIVVAAWLIFLE"
     gene            4591..5304
                     /locus_tag="VLM17_02885"
     CDS             4591..5304
                     /locus_tag="VLM17_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64536.1"
                     /translation="MRASQEPAGLVLIVEDNRNISEMVGEYLEGRGFEVDYASDGLDG
                     YRLASENSYDVVVLDLMLPRLDGVEVCKRLREEARKSTPVLMLTARDTLDEKLTGLSV
                     GADDYLTKPFAIQELEARLRALIRRERRQVGSEVLKVADLVLDPASLRATRGGAELQL
                     SPIGLKLLTILMRESPRVVSRQEIEREIWGNGLPDSDTLRSHLYNLRKTIDKPYEKPL
                     LHTVQSAGYRIADIEQPPA"
     gene            5376..6596
                     /locus_tag="VLM17_02890"
     CDS             5376..6596
                     /locus_tag="VLM17_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004426023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HSR64537.1"
                     /translation="MTSLVIVAGAWALVVVARDELVARALDENAAYFWSQRTLDPAHP
                     APDGAALHGYVVPAGGSAAAVPEDLRSLGPGLHALEDETVLVDQQGGARLYLTYPRAK
                     ATALAFEIVTFPILLALLALAASAWFTYRMARRMVSPLHWLAREVRRWDPMEPDTAAL
                     APDQLPPSAGMEARLLAGALLRMGERMRAFVRRERDFTRDASHELRTPLTVIRVATDL
                     LESDPDLPQRAQRSLARIQRAGRDMEAVIEAFLVLARESNVEPDREDFLVRDVVAEEV
                     QKARPLLEGKPVELVVVEQADPGLHASPRVLGVMLGNLIANACTFTEQGRIEVVIAKD
                     RVAITDTGVGMPAEVLQRAFDPFFRADPNAPEGKGMGLSIVRRLGERFGWPVTLESAP
                     GEGTTAVIHFVAPR"
     gene            6671..>7787
                     /locus_tag="VLM17_02895"
     CDS             6671..>7787
                     /locus_tag="VLM17_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR64538.1"
                     /translation="MPTPSLQRPRNSGLVLAGLVVLVAFASWWAWRHHADQASGDDWR
                     TAPVQRGDIRVAISATGTLSAISTVDVGSQISGQVTDVLVDFNDHVRKGEVLARIDPS
                     TYQAQIAQGNAAAGSARASLASAQAALRNAQVDYDRKASLGQRQLVARSDVDAARAAR
                     DQARAQADAAQAQIGQQLASTETARLNLQRTVIRSPVDGVVLTRTIEPGQTVAASLQA
                     PVLFQIAEDLSQMQILLAVDEADIGQVKPGQSVGFTVDAFPDRRYRGTVQQVRLSSTS
                     TSNVITYPVVVAVRNDDQSLLPGMTANAEIEISLHRDVLEVPNAALRFHPPEEAAAAN
                     GGGARTGGMADALPPIAAGLHLAPAQQAAFDAALSQLR"
BASE COUNT         1135 a         2784 c         2812 g         1056 t
ORIGIN      
        1 cagctgcgcc tggtcgacgc agtagggcgg catccaatag aggatgtcgc cgagcggacg
       61 cagcaccacg ccacgctgca gcgccgcgcg gtaggcgcgc agcccgacgc gcagggccgg
      121 gtcgaacggc ctgtggcgat cgccctcctt cgccagttcg aaggccagga tcatccccgc
      181 ctggcgcacg tcggcgacgt gcggcagcgc cgccagcggc gcggcgagcg cggccatgcg
      241 cgcggcggtg ccgcggttgc gcgcgagcac gtcgtcgctg tcgaagatcg ccagcgaggc
      301 cagcgccgcc gcgcaggcga gcgggttgcc ggtgtagctg tgcgaatgca ggaaggcgcg
      361 ctcgcgcgag tcgtcgagga agccgtcgta gattgcttgc gtcgccagca ccgcggccag
      421 cggcaggaag ccgccggtga gccccttgga caggcagagc aggtcgggct ggatgccgtc
      481 cgggacgccg cgggcggcgg ccggggcctg ttcgcaggcg aacagggtgc cggtgcggcc
      541 gaagccgacc gcgatctcgt cggcgatgag gaacacgccg tgcgcgtcgc acagctcgcg
      601 cgcgcggcgc aggtagagcg ggtcgtgcat gcgcatgccg ccggcgcatt gcacccgcgg
      661 ttcgaggatc agggcgcaga cttcgcctgc gtggcgctcg agcagcgcgg cgagcgcgtc
      721 ggcggcgcgc tgcgcgcact gcgccggcgt ctcgccggcc tcggccaggt aggcgtcggg
      781 cgagggcgtg aacagcgcct cgcacagcag cggcgcatac acgcgccgat acagcggaac
      841 gtcgccgacc gcgagggcgc cgagcgtttc gccgtggtag ccgttctcca gcgcgacgaa
      901 tcgggtccgc ttgggttcgc cgcgattgcg gaaccagtgg aaggccatct tcaacgcgac
      961 ttccacgccg gccgagccgt tgtcggcgta gaacaccttc gccaggggcg cgcggtcctg
     1021 ctcgcggggg gcgagtgcga gcagtttctc ggcgagctcg accgcgggtt cgtgcgagaa
     1081 gccggcgagg atcacctgtt cgagccgctg cgcctgtgcg ccgatcgccg ccgcgatgcg
     1141 cggctcggcg tggccgaaca ggttggtcca ccagctcgac acggcgtcga ggtagcggcg
     1201 cccgtcctgc ccgaccagcc aggcgccttc gccgcgcgcg accggcacca gcggcatcac
     1261 gtccccggcc aggtgctcgc gcatctgcgt gcaggggtgc cagagcacgg cgaggtcgcg
     1321 ggaacgccag tcggcggcgt ccgctatgat cggcggcgga gtcggtgcgt gcatggccgc
     1381 attatcgcaa gcgccgggca ataccgtggc gatgccgatg tcctgcatgc ccgccgattc
     1441 ccgcgacgcc tcgcgccggc ttcctcacgt ggccgacgcg cgcttccgtc gaccatcctg
     1501 cgccccggtc ccgatgagcc accgcctgcc caccatccac cgcatcaccg agcatgacgc
     1561 cggcccgtac cgcatggagc gcctggacct ggagttcggc aacggcgagc ggcgcctcta
     1621 cgagcgcctg cacagccgcg gccacggtgc ggtgctggtg gtgccgctgc tcgacgacga
     1681 caccgtgctg ctggtgcgcg agtacgcggc cggcgtgcac cgctacgagc tcggcctggt
     1741 gaaaggccgc atcgacgccg gcgaggcgcc gctcgaggcc gccaaccgcg agcttcagga
     1801 agaggccggc tacgccgcgc gctcgctggt gctgctgcgc tcgctcacgc tgtcgccgag
     1861 ctacatgagc cattcggccc acgtggtggt cgcgcgcgac ctctatccgc aacgcctgcc
     1921 gggcgacgag ccggaggaac tggaagtggt gccgtggaag ctggatgcac tgcatgcact
     1981 cgcgctgcgc gaggattgtt cggaagggcg ctcgcttgcg gcgctgttca tcacacggga
     2041 gtggctgcgc catggcgacg catgacatga aggcactgcg ggaggcggtg atcggcatcg
     2101 cccacgaggc ggcggcgcgc atcctcgagg tctacgacag cgacttcgcc gtgcagcaca
     2161 aggacgaccg ctcgccgctg accgcggccg acctcgccgc ccaccgctgc atcgtcgacg
     2221 cgctcgagca gctgacgccg gacatcccgg tgctgtcgga ggagtcggcc gaggacgtgc
     2281 ccgggctggt gcggcgcgaa tggcgccggc tgtggctggt cgacccgctc gacggcaccc
     2341 gcgagttcgt caagcgcaac ggcgaattca ccgtcaacat cgcgctggtc gaggacggcg
     2401 aggtcgtgct gggcgtgatc caggcgccgg tcaccggcga ggtctggcac gcgcagcgcg
     2461 acatcggcgc gttcctgcgc gagggcgatg ccgacatcgc cctcggcccg cgccggccgg
     2521 cgccccagcc gctgcgcgtc gccgccagcc gctcgcaccg cgacgcccgc accgaggcgt
     2581 tcatcgggcg catgggccag gtggaagagg tcaacctcgg ttcctcgctg aagttctgcc
     2641 gcctcgccga gggcggcctg gacgtctacc cgcgcttcgg gcccaccagc gagtgggaca
     2701 ccgcggcggg ccagtgcatc ctcgaggcgg cgggcgggat ggtggtcgat ccgaagggcc
     2761 ggccgctgcg ctacaaccag cgcgacacgc tgctcaacgg cgatttcctc gcgctgggcg
     2821 atccgggcct gccgtggcgg caatggctgg ccgcgcagga cggcccgtga tccgggacgc
     2881 gcccgacatc ggcgagctgc tcgccatcat ggcccgcctg cgcgatccgc ggcgcggttg
     2941 cccgtgggac gtcgcgcaga cgttcgccac gatcgcgccc tacacgatcg aggaagccta
     3001 cgaagtcgcc gatgcgatcg atcgcggcga cctgcaggcg ctccgggacg aactgggcga
     3061 cctgctgctg caggtggtgt tccatgcgcg gatggcggag gagcagggcg cgttcgcctt
     3121 cgccgacgtg gtcgcggcga tctgcgacaa gatggtgcgg cgccatccgc acgtgttcgc
     3181 cgacgcacgg gtgggcgatg cgcacgcgca gacccgggcg tgggaggaac acaagcggcg
     3241 cgagcgcgag gcggccggcc acggggatgg gtcggcgctc gccggcgtcg cgcgcgggct
     3301 gccggagtgg cagcgtgcgc tgaagctgca gaagaaggcg gcgcgggtcg gcttcgactg
     3361 gcccggcccg gagccggtga tcgccaagct gcacgaggaa atcgacgagg tgcgcgccga
     3421 gttcgccgcg cgcgacgcgg cgcccgagga tgcacgggtg caggagcggc tggaagacga
     3481 aatcggggac ctgctgttcg tgtgcgccaa cctcgcccgc cacgcgcgcg tcgacgtcgg
     3541 cagcgcactg cgccgcgcca acctcaagtt cgagaggcgt ttccgcgcga tggaatcgct
     3601 cgcggcggcc gatggccagg acctgtccac gctgccgctg gaggcgcagg atgcgtactg
     3661 ggaccgggcc aaggccgccg aacgcgcctg acgcggagtc cgggtaagcg cgcggcggca
     3721 cccggcgttt tgcgcgacac atccgccgat atcgaatccg ggtgcgcttc gcctactggg
     3781 tcgatggacg ggagggcagg atgagacgct tcgccagctt ccgcgagttc tatcccttct
     3841 acctcggcga gcatgccaac cgcgtctcgc gccggctgca cttcgccggc ggctgcggcg
     3901 tgctcgtcct ggccgcggtg gggctgtggc aacgcgacgc gtggtggctg ctggccgcgc
     3961 ccgcgtgcgg ctacggctgc gcctgggcgg gccatttctt cttcgagaag aaccggccgg
     4021 cgaccttccg ccaccccttc tattcgttcg ccggcgactg ggtgatgttc gtcgacatcc
     4081 tgcgcgggcg tgtgcgcctg tagcggccgc tcccgcagcg cctactcgag gaagatcagc
     4141 cacgccgcca cgacgatcag cccgaagccc gcccagtggt tccagcgcag cggctggccg
     4201 aggtaccaga ccgagaagcc ggcgaacacc agcagcgtga tcacctcctg catgcccttg
     4261 agctgcggcg ccgaatacac ggcgctgccg agccggttgg ccggcacctg cagggtgtat
     4321 tcgaagaagg cgatccccca gctgacgacg atgaccagca acagcggcgc gctccggtac
     4381 ttcaggtgcc cgtaccaggc gaaggtcatg aagacgttgg agccgagcag cagcagcacc
     4441 ggcaggaggc ggtcgaggag ggcgggcacg ggaggtccga tggacggggc ggcgggggcc
     4501 ccagcctagc gcccggcggg gtagtcttca cattgcctca acggtcgacc gggcacgttt
     4561 cacaaagctg aagcccctag gaaccctgac atgcgcgcct cccaagaacc cgccggcctg
     4621 gtcctgatcg tcgaagacaa ccgcaacatc tccgagatgg tgggtgaata cctcgaaggc
     4681 cgcggcttcg aggtcgacta cgcctccgac ggcctcgacg gctaccggct ggcgtccgag
     4741 aacagctacg acgtggtcgt cctcgacctg atgctgccgc gtctggatgg cgtggaggtc
     4801 tgcaagcggc tgcgcgagga ggcccgcaag tccacgccgg tgctgatgct gaccgcgcgc
     4861 gacaccctcg acgagaagct cacgggcctg tcggtcggcg ccgacgacta cctgaccaag
     4921 cccttcgcca tccaggagct cgaggcccgg ctgcgcgcgc tgatccgccg cgagcgccgc
     4981 caggtcgggt ccgaggttct gaaggtggcc gacctggtgc tcgatccggc cagcctgcgc
     5041 gccacccgcg gcggcgcgga gctgcagctc tcgccgatcg gcctgaagct gctgaccatc
     5101 ctgatgcgcg aatcgccgcg cgtggtcagc cggcaggaga tcgagcgcga gatctggggc
     5161 aacggcctgc ccgattcgga caccctgcgc agccacctgt acaacctgcg caagaccatc
     5221 gacaagccgt acgagaagcc gctgctgcat accgtgcaga gcgccggcta ccggattgcc
     5281 gacatcgaac agccgcccgc ctgagccacg cgcgcgtggc aacccagcac ggactcccgc
     5341 gcaagctgcg ggtggccttc ctgttgcagg tgacgatgac gagcctggtc atcgtcgcgg
     5401 gcgcgtgggc gctcgtggtc gtggcgcgcg acgagctggt cgcccgggcg ctcgacgaga
     5461 acgccgccta cttctggtcc cagcgcacgc tcgatcccgc ccacccggcg cccgatggtg
     5521 ccgccctgca cggctacgtg gtgcctgccg ggggctcggc cgcggcggtg ccggaggacc
     5581 tgcgcagcct ggggccgggg ctgcacgcgc tcgaggacga gacggtgctg gtcgaccagc
     5641 agggcggcgc gcgcctctac ctcacctacc cgcgcgcgaa ggcgaccgcg ctcgccttcg
     5701 agatcgtgac cttcccgatc ctgctggcgc tgctggcgct cgccgccagc gcatggttca
     5761 cctaccggat ggcacggcgc atggtgtcgc cgctgcactg gcttgcgcgc gaagtgcgtc
     5821 gctgggatcc gatggaaccg gacaccgccg cgctggcgcc ggaccagctg ccccccagcg
     5881 cgggcatgga ggcgcgcctg ctggcgggcg cgctgctgcg catgggcgag cgcatgcgcg
     5941 ccttcgtccg ccgcgagcgc gacttcaccc gcgatgccag ccatgagctg cgcaccccgc
     6001 tcaccgtcat ccgcgtcgcc accgacctgc tggagagcga tcccgacctg ccgcagcgcg
     6061 cgcagcgctc gctcgcccgc atccagcgcg ccggccgcga catggaggcg gtgatcgagg
     6121 ccttcctcgt gctcgcgcgc gagagcaacg tcgagcccga ccgcgaggat ttcctcgtcc
     6181 gcgacgtggt cgccgaggaa gtgcagaagg cgcgcccgct gctcgagggc aagccggtcg
     6241 agctggtcgt cgtcgagcag gccgaccccg ggctgcacgc ctcgccgcgc gtgctcggcg
     6301 tgatgctcgg caacctgatc gccaatgcgt gcaccttcac cgagcaggga cgcatcgagg
     6361 tggtgatcgc gaaggaccgg gtggccatca ccgacaccgg cgtcggcatg ccggccgaag
     6421 tgctgcagcg cgcgttcgat ccgttcttcc gcgcggaccc gaacgcccca gagggcaagg
     6481 gcatgggcct gtcgatcgtg cgccggctcg gcgaacgctt cggctggccg gtgacgctgg
     6541 aaagcgcgcc cggcgagggc acgaccgcgg tgatccactt cgtggcgccg cgctgaaccc
     6601 cggcggcggc ccgtcaacgc cccggcgccg cgggcgttag agtcgtttcc ccctcgccat
     6661 gcccgcccgc atgcccacgc cttccctcca acgcccgcgc aattccggcc tggtgctggc
     6721 ggggctggtc gtgctcgtcg cgttcgcctc gtggtgggcc tggcgccacc acgccgacca
     6781 ggcgtcgggc gacgactggc gcaccgcgcc ggtgcagcgc ggcgacatcc gcgtcgccat
     6841 ctccgccacc ggcacgctga gcgcgatctc caccgtcgac gtcggcagcc agatctccgg
     6901 ccaggtgacc gacgtgctgg tcgatttcaa cgaccacgtg cgcaagggcg aggtgctcgc
     6961 gcgcatcgac ccgagcacct accaggcgca gatcgcccag gggaacgcgg ccgccggcag
     7021 cgcgcgcgcc tcgctggcca gcgcgcaggc cgcgctgcgc aacgcgcagg tcgactacga
     7081 ccgcaaggca tcgctcggcc agcggcaact ggtcgcgcgc agcgacgtcg atgccgcccg
     7141 cgccgcgcgc gaccaggcgc gcgcgcaggc cgatgccgcg caggcgcaga tcggccagca
     7201 actggcatcc accgaaaccg cgcggctcaa cctgcagcgc acggtgatcc gttcgcccgt
     7261 cgacggggtg gtgctgaccc gcacgatcga accggggcag accgttgccg ccagcctgca
     7321 ggcaccggtg ctgttccaga tcgccgagga cctgtcgcag atgcagatcc tgctggccgt
     7381 ggacgaggcg gacatcggcc aggtgaaacc cggccagtcg gtgggcttca ccgtcgatgc
     7441 gttcccggat cgccgctacc gtggcaccgt gcaacaggtg cggctctcct cgaccagcac
     7501 cagcaacgtg atcacctatc cggtggtggt cgcggtgcgc aacgacgacc agtcgcttct
     7561 tcccggcatg accgcgaacg cggaaatcga aatcagcctg caccgcgacg tcctcgaggt
     7621 gccgaacgcc gcgctgcgct tccatccgcc cgaggaagcg gccgcggcca acggcggcgg
     7681 cgcgcgcacg ggcggcatgg ccgacgcgct tccgccgatc gccgcggggc tgcacctcgc
     7741 gccggcacag caggcggcgt tcgacgccgc gctgtcgcag ctgcgcg
//
LOCUS       DATIQC010000137         1720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_680227, whole genome shotgun sequence.
ACCESSION   DATIQC010000137 DATIQC010000000
VERSION     DATIQC010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680227"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1242)
                     /locus_tag="VLM17_02900"
     CDS             complement(<1..1242)
                     /locus_tag="VLM17_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HSR64539.1"
                     /translation="MALPQILFLLILAGGLYLFVSERLRVDVTAMLVLLALVLTRVLK
                     PEQALSGFASEPAIIVAAVFVLSGGLAATGVTERLGLWIGRMAGRSEWRAIAVVMPAV
                     AALSAFTHHVMVTAMMLPLLLRHAREAKLPASRLLMPMSLAASIGTTLTLVSAPAFLL
                     ASNLIERSGGEPLGIFSITPIGLALVAMGMVYMQLARWLLPRRSGAHGDDAYLRLDRY
                     RTELLVPEGSRWSTRPLAELQKALGDRFRLRGWLRDGKARDDLGPASPLLVGDVLMVE
                     AAADELMSLHDDPGLDLDAIARFGHRINGDGPPQLVQAVVAPGSEFIGRSVRGLDFSK
                     RFQAVIVGLWRRSGDIGERLAETRLREGDLLVLWGRPSTFADLAAHHGFLMLVPFAGE
                     ARRRLRAPLAIAILLGTVVAAA"
     gene            1357..>1720
                     /locus_tag="VLM17_02905"
     CDS             1357..>1720
                     /locus_tag="VLM17_02905"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSR64540.1"
                     /translation="MPGPVPSPAVEALERELAEARATIGALREEQAALRQEQAVFAHG
                     ISHDLRAPLRSIDSFVALLARRDGLDDTARGYVERVRAASARAGSLIDGLLALSHAGR
                     AELAPAAVDLSLLAEWSLA"
BASE COUNT          260 a          637 c          607 g          216 t
ORIGIN      
        1 cgccgcggcg accacggtgc cgagcaggat cgcgatcgcc agcggcgcgc gcagccgtcg
       61 ccgcgcctcg ccggcgaagg gcaccagcat caggaagccg tggtgcgccg cgaggtcggc
      121 aaacgtcgac ggccttcccc acagcaccag caggtcgcct tcgcgcaggc gggtttccgc
      181 caaccgctcg ccgatgtcgc cgctgcgccg ccacaggccg acgatcactg cctggaagcg
      241 cttggagaag tccagtccgc gcaccgagcg gccgatgaat tccgaccccg gcgcgaccac
      301 cgcctgcacc agctgcggcg ggccatcgcc gttgatgcga tggccgaagc gggcgatcgc
      361 atcgaggtcc agcccgggat cgtcgtgcag cgacatcagc tcgtcggcgg ccgcttccac
      421 catcagcacg tcgccgacca gcagcgggct ggccggaccg aggtcgtcgc gcgccttgcc
      481 gtcgcgcagc cagccgcgca ggcggaagcg gtcgccgagc gccttctgca gctcggccag
      541 cgggcgcgtg ctccagcgcg agccttccgg caccagcagc tcggtgcggt agcggtccag
      601 gcgcaggtac gcatcgtcgc cgtgcgcgcc gctgcggcgc ggcaacagcc agcgcgccag
      661 ctgcatgtac accatgccca tcgcgaccag cgccaggccg atcggcgtga tcgagaagat
      721 gcccagcggc tcgccgccgc tgcgctcgat caggttgctg gcgagcagga acgcgggcgc
      781 gctgaccagg gtgagggtgg tgccgatcga ggcggccagc gacatcggca tcagcaggcg
      841 cgaggccggc agcttggcct cgcgggcgtg ccgcagcagc agcggcagca tcatcgcggt
      901 gaccatcacg tggtgggtga aggccgacag tgccgccacc gccggcatca ccaccgcgat
      961 cgcccgccat tcgctgcgcc cggccatgcg accgatccac aggcccaggc gctcggtcac
     1021 gccggtggcg gcgaggccgc cggagagcac gaacaccgcg gcgacgatga tcgccggctc
     1081 gctggcgaag cccgacagcg cctgctcggg cttgagcacg cgggtcagca ccagcgccag
     1141 cagcaccagc atggcggtca cgtcgacccg cagccgttcg ctgacgaaca ggtacagccc
     1201 gccggcaagg atcagcagga acaggatttg cggcagggcc atgcgcgacg gctcttgggg
     1261 gcatgccatt ctggggcatg cgtgtttagg gtctgtatac ccagcctaca cacggcgttc
     1321 acgcatactg aatgcgtctc ccgccccctc gatgcgatgc ccggacccgt tccttccccc
     1381 gccgtcgaag ccctcgaacg cgagctggcc gaagcccgcg ccaccatcgg ggcgctgcgc
     1441 gaggagcagg cagcgctgcg gcaggaacag gcggtcttcg cccacggcat ctcccacgac
     1501 ctgcgtgcgc cgctgcgcag catcgatagc ttcgtcgccc tgctggcgcg ccgggacggg
     1561 ctggatgaca ccgcgcgtgg ctacgtcgag cgcgtgcgcg ccgcgtcggc gcgggccggc
     1621 agcctgatcg acgggctgct cgcgctttcg cacgccggac gcgccgagct cgcgccggcg
     1681 gcggtcgacc tgagcctgct cgccgagtgg tcgctggccg
//
LOCUS       DATIQC010000138         7408 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_256586, whole genome shotgun sequence.
ACCESSION   DATIQC010000138 DATIQC010000000
VERSION     DATIQC010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7408
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256586"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VLM17_02910"
     CDS             complement(<1..297)
                     /locus_tag="VLM17_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64541.1"
                     /translation="MLGGPAAELPRRLTLRGAFTQVRQAADAPLPESRMKRTALLLSW
                     VFLAACSRGAPPAAQPAMQPATQPAAAGSSAPAPRAAPASASTTMAAAASVPPTE"
     gene            complement(258..1571)
                     /gene="hmgA"
                     /locus_tag="VLM17_02915"
     CDS             complement(258..1571)
                     /gene="hmgA"
                     /locus_tag="VLM17_02915"
                     /EC_number="1.13.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004411 - homogentisate 1,2-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HSR64542.1"
                     /translation="MAIESTGYQSGFGNEFASEAIAGTLPVGRNSPQRVAHGLYAEQL
                     SGTAFTAPRHANRRSWLYRIRPAALHGPFTAFAQPAASRQHFHNDFGSGPVTPDQLRW
                     SPLPLPQAPTDFIDGLFTMAGNGGPAAGTGVGIHLYAANRDMQDRFFYSADGELLLVP
                     QQGRLHLETELGVLDVEPQEIAVIPRGVRFRVALPDGEARGYVCENFGAFLRLPDLGP
                     IGSNGLANPRDFLAPHAAFEDRDGAFELVAKFQGHLWRADIGHSPLDVVGWHGNYAPY
                     KYDLRRFNTIGSISYDHPDPSIFLVLTSPSDTPGVGNMDLAIFPPRWLVAQDTFRPPW
                     FHRNVASEFMGLIHGVYDAKAEGFAPGGASLHNCMTGHGPDAATFEKASDADLSKPDV
                     IRDTMAFMFETRAVIRPTAQALDAAHRQRDYQACWAGLRRNFRAG"
     gene            complement(1637..2737)
                     /gene="hppD"
                     /locus_tag="VLM17_02920"
     CDS             complement(1637..2737)
                     /gene="hppD"
                     /locus_tag="VLM17_02920"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HSR64543.1"
                     /translation="MNAAAVQPAATRPNLGIQVTTFENPMGINGFEFVEFAAPAGQGA
                     AMRDYLERLGFTAIARHRDRDITLFRQGGVNFLLNETTDSFASRFAAAHGPSACGFAI
                     RFRKPVTEVLAHVVANGGVEVEAAGAVDTLKINGIGDCMLYLVDDARADLYADYVPLP
                     GVDQDPPGFGLTFIDHLTHNLFLGNMQKWSDYYEKLFNFREIRYFDIKGAKTGLLSKA
                     MTAPDGVVRIPLNESSDEKSQINEYLRAYNGEGIQHIALFTDDIYATVEAMRARNIEF
                     LDTPDTYFEVIDQRVPNHGEDVARLARNKILIDADMETKSRKLLQIFTQNAFGPIFFE
                     IIQRKGNEGFGEGNFQALFESIERDQMKRGVL"
     gene            2830..3306
                     /locus_tag="VLM17_02925"
     CDS             2830..3306
                     /locus_tag="VLM17_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HSR64544.1"
                     /translation="MNALRPATLELEQFLPYRLSVLSNRVSGAIARVYSERFALGVTE
                     WRVMAVLGRYPDLSAGEVAQRTAMDKVAVSRAVASLLEAGRLERETHGDDRRRSVLRL
                     SAAGQAIYREVAPLALDFEQRLLAGMVAAERAALFRLLDRLDELELQAEADAAPAP"
     gene            3410..4717
                     /locus_tag="VLM17_02930"
     CDS             3410..4717
                     /locus_tag="VLM17_02930"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HSR64545.1"
                     /translation="MSAIAPELLVQLRAAIARGDESEALRLADVVLAGEPGHEATLVW
                     LSARARQRGAFDEAVALARRGLAVHPRSAALHLQLGAALADAGDDAAAEASLQDVPEH
                     APTHLFAQLWLGHVQARRGAREAGLRTRAHALAAAERRGLLAAEARVPADVRVQLDAA
                     MAALREARAAVLAQALDGLSVPAQERARVEAAFARHLGQPGPMPAHPLQQPAFLFVPG
                     LDERPWWPRDAFPFLAALEARTDAIRAELLAVLAGDAGFAPYIDMPADAPAAATWSAL
                     NRSPAWTGYHFFRHGERVGEHCARCPHTAAALDALPLLRIPGHAPEALFSVLRPRTHI
                     PPHTGVINGRLTVHLPLLVPADCGALAVAREARTWHEGECLVFDDSFVHEAINRSGQT
                     RAVLIFDLWHPGLPEAARAALAAAIAAYGAFNRALGLDDPMRE"
     gene            complement(4779..6269)
                     /locus_tag="VLM17_02935"
     CDS             complement(4779..6269)
                     /locus_tag="VLM17_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HSR64546.1"
                     /translation="MGDPAPAAGQPPAFPQTLGHPRPLWMLFMTEFWERFAFYGIRWA
                     LTLYIVAEFYNGSGEGEKPASLIYGAYLALVYAAAIFGGYIADRVIGYQRSILLGAAV
                     MSLGLFMIAWPDPTVFKLGLATVITGNGLFKPNISAMVGQLYAPGDDRRDSGFTLFYM
                     GINAGAFIAPILTGLLSNKVFGSDAIPDYKVVFIASGVGMLVSLVWFWFGRRQLGGIG
                     RPAEGAGGKHRVLYVLGFCVVAMPVYYFLLDIDATMLQWILSALFLALCAMILVEGFR
                     EGPVQRDRAIAMLLIFLFNVLFWCFFEQAGSSFNFLADKIVDRQMFGWTFPVGWFQSV
                     NSLAIITLAPIVAWTWVRMGRMNPSIPRKFGLGIIFNGLAFLLLMAALSGMVVAGKIP
                     FWTLFMVYVIQSVGELCLSPIGLSMTTKLAPVRLVGLGMGGWFLSTGIGNNLSGIFAG
                     HVSGAGGMTVASAHAGYTQGFIILMVGGVALFLVAPLISRLMHGVK"
     gene            complement(6406..7296)
                     /locus_tag="VLM17_02940"
     CDS             complement(6406..7296)
                     /locus_tag="VLM17_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HSR64547.1"
                     /translation="MTIEDNQRPLEAGIHTDLAGRMSYGGYLQLEQLLSAQQPLSKPP
                     HHDELLFIIQHQVSELWMKLLIHEFSAALAHLRRDELDACQKIFARCKQVLRQMTEMW
                     SVLETLTPSEYMEFRDILGPSSGFQSLQYRMIEFLLGNKNAAMLKVFAHDAEGSERLR
                     AALEAPSLYDEVLAYLARHGHAVPAGHLRRDWAKAHVFDPALVPVFERIYEDTAAHWA
                     AYHLCEDLVDLESQFQLWRFRHMRTVMRIIGFKRGTGGSSGVGFLKQALELTFFPELF
                     EVRTVIGMAAPAHDAAQQQS"
BASE COUNT         1136 a         2527 c         2670 g         1075 t
ORIGIN      
        1 ttcggtcggc ggcacggacg cggcagcggc catcgtggtc gacgcggatg caggcgcggc
       61 gcgcggcgcc ggcgcggacg agccggcggc cgccggctgc gtcgccggct gcatcgctgg
      121 ttgggcggcg ggcggcgcgc cgcgcgaaca ggcggcgagg aatacccagg acagcaatag
      181 cgcggtccgc ttcatccggg actccggcaa tggcgcatcc gcagcttgcc gcacctgggt
      241 gaaagcaccg cgaagcgtca gccggcgcgg aagttccgcc gcaggcccgc ccagcacgcc
      301 tggtagtcgc gctgccggtg cgccgcgtcg agcgcctgcg cggtcgggcg gatcacggcg
      361 cgcgtctcga acatgaaggc catggtgtcg cggatgacgt cgggcttcga caggtcggcg
      421 tcgctcgcct tctcgaacgt cgccgcgtcc gggccgtgac cggtcatgca gttgtgcagc
      481 gacgcaccgc ccggcgcgaa gccctcggcc ttggcgtcgt acacgccgtg gatcaggccc
      541 atgaactcgc tcgccacgtt gcggtggaac cacggcgggc ggaacgtgtc ctgcgcgacc
      601 agccagcgcg gcgggaagat cgccaggtcc atgttgccca cgccgggggt gtcgctcggc
      661 gaggtgagca ccaggaagat cgacggatcg ggatggtcgt aggagatcga gccgatcgtg
      721 ttgaagcggc gcaggtcgta cttgtacggc gcgtagttgc cgtgccagcc gaccacgtcg
      781 agcggcgaat gaccgatgtc ggcgcgccac aggtggccct ggaacttggc gaccagttcg
      841 aaggcgccgt cgcgatcctc gaacgccgcg tgcggcgcga ggaaatcgcg cgggttggcg
      901 aggccgttgc tgccgatcgg gcccaggtcg ggcaggcgca ggaaggcgcc gaagttctcg
      961 cacacgtagc cgcgggcctc gccgtccggc agggcgacgc ggaagcgcac gccgcgcgga
     1021 atcaccgcga tctcctgcgg ctcgacgtcg agcacgccga gttcggtctc gaggtgcagg
     1081 cgcccctgct gcggcacgag cagcagctcg ccgtcggcgc tgtagaagaa gcggtcctgc
     1141 atgtcgcggt tggccgcgta cagatggatg cccacgccgg tgccggcggc cgggccgccg
     1201 ttgccggcca tggtgaacag gccgtcgatg aagtcggtcg gcgcctgcgg cagcggcagc
     1261 gggctccagc gcagctggtc gggcgtgacc gggccgctgc cgaagtcgtt gtggaaatgc
     1321 tgtcttgaag ccgcgggctg cgcgaacgcg gtgaacggcc cgtgcagcgc cgccgggcgg
     1381 atccggtaca gccagctgcg ccggttggcg tgccgcggcg cggtgaacgc cgtgcccgac
     1441 agctgctcgg cgtacagccc gtgcgccacc cgctgcggcg agttgcggcc gacgggcagc
     1501 gtccccgcga tcgcctcgct ggcgaattcg ttgccgaagc cggactggta accggtgctc
     1561 tcgatggcca tgcgcgcctc gtggtcggtg tcagcaaaaa gcccctctgg cgaggggctt
     1621 tggggaggga gtgggctcag agcacgccgc gcttcatctg gtcgcgctcg atgctctcga
     1681 acagtgcctg gaagttgcct tcgccgaagc cctcgttgcc cttgcgctgg atgatctcga
     1741 agaagatcgg gccgaacgcg ttctgggtga agatctgcag cagcttgcgc gacttggtct
     1801 ccatgtcggc gtcgatcagg atcttgttgc gcgccagccg ggcgacgtcc tcgccgtggt
     1861 tgggcacgcg ctggtcgatc acctcgaagt aggtgtcggg cgtgtcgagg aactcgatgt
     1921 tccttgcgcg catcgcctcg accgtcgcgt agatgtcgtc ggtgaacagc gcgatgtgct
     1981 ggatgccctc gccgttgtag gcgcgcaggt actcgttgat ctggctcttc tcgtcgctgg
     2041 actcgttcag cgggatgcgc accacgccgt ccggcgcggt catcgccttc gacagcaggc
     2101 cggtcttggc gcccttgatg tcgaagtagc ggatctcgcg gaagttgaac agcttctcgt
     2161 agtagtccga ccacttctgc atgttcccga ggaacaggtt gtgggtcagg tggtcgatga
     2221 aggtcaggcc gaagcccggc ggatcctggt cgacgcccgg cagcggcacg tagtcggcgt
     2281 agaggtcggc gcgcgcgtcg tcgaccaggt acagcatgca gtcgccgatg ccgttgatct
     2341 tgagggtgtc gaccgcaccg gcggcctcga cctccacccc gccgttggcg accacgtggg
     2401 ccagcacctc ggtcaccggc ttgcggaaac ggatcgcgaa gccgcaggcc gaggggccgt
     2461 gcgcggcggc gaagcgcgag gcgaaggaat cggtcgtctc gttgagcagg aagttgacgc
     2521 cgccctggcg gaacagggtg atgtcgcggt cgcggtggcg ggcgatggcg gtgaagccca
     2581 ggcgctcgag gtaatcgcgc atggccgcgc cctgcccggc cggcgcggcg aattcgacga
     2641 actcgaaccc gttgatgccc atcgggttct cgaaggtcgt gacctggatg ccgaggttgg
     2701 gacgggtggc ggcgggctgg acggcggcgg cgttcatggc tggctccggg ggcggctggg
     2761 gcggcccgtt gacggcggtt ggctggtcac cgttatagtt tcagatgaaa ccatatgcaa
     2821 gcgcacgcca tgaacgccct ccgtcccgcc accctcgaac tcgagcagtt cctgccctat
     2881 cgcctctcgg tgctcagcaa ccgggtcagc ggcgcgatcg cccgggtgta ttccgagcgc
     2941 ttcgccctcg gcgtgaccga atggcgggtg atggccgtgc tcggccgcta tccggacctg
     3001 tcggccggcg aggtggcgca gcgcacggcg atggacaagg tcgcggtcag ccgggccgtc
     3061 gccagcctgc tcgaagccgg ccggctcgag cgcgagaccc acggcgacga ccgccgccgc
     3121 tcggtcctgc ggctgtcggc cgcgggccag gcgatctacc gcgaggtcgc gccgctcgcg
     3181 ctggacttcg agcagcgcct gctcgcgggc atggtggcgg cggagcgcgc cgccctgttc
     3241 cgcctgctcg accggctgga cgaactggaa ctgcaggccg aggccgacgc ggcgcccgcg
     3301 ccctgacccg cgcgcggccg cgagcgcgcg tccccgcggc cggccgggcg caccggaagc
     3361 gccgccgcgc catgccatga tccggcgcac gccccgcgca ggatgcccga tgtccgcgat
     3421 cgctccggaa ctgctggtgc agctgcgcgc ggcgatcgcg cgcggcgacg agtccgaagc
     3481 gctgcgcctg gccgacgtcg tgctggccgg cgagcccggg cacgaagcga cgctggtctg
     3541 gctgtcggcg cgggcgcgcc agcgcggcgc attcgacgag gcggtggcgc tggcgcggcg
     3601 cggcctcgcc gtccatcccc gttcggccgc gctgcacctg cagctcggtg ccgcgctcgc
     3661 ggacgccggt gacgacgccg ccgccgaggc cagcctgcag gacgtgccgg aacacgcgcc
     3721 gacccacctg ttcgcgcagc tgtggctggg ccacgtgcag gcgcggcgcg gcgcgcgcga
     3781 ggccggcctg cgcacccgcg cccacgcgct ggcggcggcg gagcggcgcg gcctgctggc
     3841 ggcggaggca cgcgtccccg ccgacgtgcg cgtgcagctc gatgcggcga tggcggcact
     3901 gcgcgaagcg cgcgcggcgg tgctcgcgca ggcgctcgat ggcctgtcgg tgccggcgca
     3961 ggagcgtgcg cgcgtggaag ccgccttcgc ccgtcacctc ggccagccgg ggcccatgcc
     4021 ggcgcatccg ctgcagcagc cggcgttcct gttcgtcccc ggtctcgacg agcgcccgtg
     4081 gtggccgcgc gacgcctttc cgttcctcgc cgccctcgaa gcacggaccg atgcgatccg
     4141 cgccgaactg ctggcggtgc tggccggcga cgcgggcttc gcgccgtaca tcgacatgcc
     4201 cgccgacgcc cccgccgcgg cgacctggag cgcgctcaac cgttcgcccg cctggaccgg
     4261 gtaccacttc ttccgccacg gcgaacgcgt cggcgaacac tgcgcgcgct gcccgcacac
     4321 cgccgccgcg ctcgatgcgc tgccgctgct gcgcatcccg ggccacgcgc ccgaagcgct
     4381 gttctcggtg ctgcgtccgc gcacccacat cccgccgcac accggcgtga tcaacggccg
     4441 cctgaccgtg cacctgccgt tgctggtgcc ggccgactgc ggcgcgctgg cggtcgcgcg
     4501 cgaggcgcgc acgtggcacg agggcgaatg cctggtgttc gacgattcgt tcgtccacga
     4561 ggcgatcaac cgcagcgggc agacgcgcgc ggtgctgatc ttcgacctgt ggcatccggg
     4621 cctgccggaa gcggcacgcg cggcgctggc ggcggcgatc gccgcctacg gcgcgttcaa
     4681 ccgcgcgctc ggcctggacg atccgatgcg ggagtgaagg cccaaaacga aaaacggcgg
     4741 ccagggccgc cgttttcgtc acgcaatcgc gcgaccgcct acttgacgcc gtgcatcagc
     4801 cggctgatca gcggcgcgac caggaacagc gcgaccccgc cgaccatcag gatgatgaaa
     4861 ccctgggtgt agccagcgtg cgccgaagcc acggtcatgc cgcccgcgcc gctgacgtgg
     4921 ccggcgaaga tgcccgacag gttgttgccg atgccggtgg aaaggaacca gccgcccatg
     4981 ccgaggccga ccaggcgcac cggcgcgagc ttggtcgtca tcgacaggcc gatcggcgag
     5041 aggcacagct cccccaccga ctggatgacg tagaccatga acaacgtcca gaacggaatc
     5101 ttgccggcga cgaccatgcc cgacagcgcg gccatcaaca gcaggaacgc caggccgttg
     5161 aagatgatgc ccaggccgaa cttgcgcggg atcgacgggt tcatgcgtcc catccgcacc
     5221 cacgtccagg ccacgatcgg cgccagggtg atgatcgcca gcgagttgac ggactggaac
     5281 cagccgaccg ggaaggtcca gccgaacatc tggcggtcga cgatcttgtc ggcgaggaag
     5341 ttgaacgaac tgccggcctg ctcgaagaag caccagaaca gcacgttgaa caggaagatc
     5401 agcagcatcg cgatcgcgcg gtcgcgctgg accggcccct cgcggaaccc ctcgaccagg
     5461 atcatcgcgc acagcgccag gaacagcgcc gacaggatcc actgcagcat ggtcgcgtcg
     5521 atgtcgagca ggaagtagta gaccggcatc gcgaccacgc agaaaccgag tacgtacagc
     5581 acccggtgct tgccgccggc gccttcggcc ggacggccga tgccgccgag ctggcggcgg
     5641 ccgaaccaga accacaccag gctcaccagc atgccgacgc ccgatgcgat gaacaccacc
     5701 ttgtaatcgg gaatcgcatc gctgccgaac accttgttgg acagcagccc ggtcaggatc
     5761 ggagcgatga aggcgccggc attgataccc atgtagaaca gggtgaagcc cgaatcgcgg
     5821 cgatcgtctc cgggcgcgta cagctggccc accatcgccg agatgttcgg cttgaacagg
     5881 ccgttgccgg tgatcaccgt ggccaagcca agcttgaaca ccgtcggatc cggccaggca
     5941 atcatgaaca acccgagcga catgaccgcg gcgccgagca ggatcgagcg ctggtagccg
     6001 atcacgcggt cggcgatgta gccgccgaag atcgccgcgg cgtacaccag tgcaaggtat
     6061 gcgccgtaga tcaggctggc cggcttctcg ccttcgcccg agccgttgta gaactcggcg
     6121 acgatgtaca gcgtcagcgc ccagcggatg ccgtagaagg cgaagcgctc ccagaactcg
     6181 gtcatgaaca gcatccacag cggacgcgga tggccgaggg tctgcgggaa ggcgggcggc
     6241 tggcccgcgg cgggcgcggg gtcgcccatc ggcgggccca tcggttcggc gttcggaatg
     6301 gtcgtgttca agcggatccc ctgcggtgca gacgacgcga aggcgccgat ccgcccgagg
     6361 atcgcccgcg ggcgcgcgcg gcgtcaacgc aggcgcgggc cgtgctcagc tttgctgctg
     6421 tgcagcatcg tgcgccggcg cggccatgcc gatgaccgtg cgcacctcga acagctccgg
     6481 gaagaaggtc agttccagcg cctgcttgag gaagccgacg cccgacgaac cgccggtgcc
     6541 gcgcttgaag ccgatgatgc gcatcaccgt gcgcatgtgg cggaagcgcc acagctggaa
     6601 ctgcgactcc aggtcgacca ggtcctcgca caggtggtac gcggcccagt gcgcggcggt
     6661 gtcctcgtag atgcgctcga acaccggcac cagcgcggga tcgaacacgt gcgccttcgc
     6721 ccagtcgcgc cgcaggtgtc cggccggcac cgcgtggccg tggcgcgcga ggtaggcgag
     6781 cacctcgtcg tacaggctcg gcgcctcgag cgcggcgcgc aggcgctcgc tgccctcggc
     6841 gtcgtgcgcg aacaccttca gcatcgccgc gttcttgttg ccgagcagga actcgatcat
     6901 ccggtactgc agcgactgga accccgacga ggggccgagg atgtcgcgga attccatgta
     6961 ttccgacggc gtcagcgttt ccagcaccga ccacatctcg gtcatctgcc gcagcacctg
     7021 cttgcagcgc gcgaagatct tctggcaggc gtcgagctcg tcgcggcgca ggtgcgccag
     7081 cgcggcggag aactcatgga tcagcagctt catccacagc tccgacacct ggtgctggat
     7141 gatgaagagc agctcgtcgt ggtgcggcgg cttcgacaac ggctgctgcg cggacagcag
     7201 ctgctccagc tgcaggtagc cgccatagct catgcgcccg gcaaggtccg tatggatgcc
     7261 ggcctcgagc gggcgctggt tgtcttcgat ggtcatgggg cctggaagca gtgatccgac
     7321 gcagcatcaa aagggtaacg catcgcggcc agggtcatgc ggctgtcgcc gtgcgcggac
     7381 gatcccggcg catgtgcgga ccaggccg
//
LOCUS       DATIQC010000139         4075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_433182, whole genome shotgun sequence.
ACCESSION   DATIQC010000139 DATIQC010000000
VERSION     DATIQC010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433182"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VLM17_02945"
     CDS             <1..290
                     /locus_tag="VLM17_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64548.1"
                     /translation="SAQSVGTAVQATVQDATQADAANRDVRDHTCLRETGSLVTASQN
                     RRVVRRARKDNQPTVEVVCADYGRAYTQDDIRGTGAVDIADALRRLDPSVH"
     gene            complement(362..1141)
                     /locus_tag="VLM17_02950"
     CDS             complement(362..1141)
                     /locus_tag="VLM17_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008213096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HSR64549.1"
                     /translation="MQRTVPLLLAAGLAAAGGVALAGTNHHAHHAAKAGAIPAYVQAA
                     VADPGRDADRAKDANRHAAEVVAFAGVKPGDKVLELVPGGGYFTRVFSKVVGPDGKVY
                     AAIPAPMEKYSDDTKKLPADYPNVSLLEQAADALATPEPVDVAFTSQNYHDYPDKFMG
                     PTDPALLNKAVFAALKPGGTYIVIDHVAQAGSGTRDTDTLHRIDPALVKQQVLAAGFE
                     YVGESRVLANPADDHSLKVFDPSVRGHTDQFAYKFRKPMAK"
     gene            complement(1275..1661)
                     /locus_tag="VLM17_02955"
     CDS             complement(1275..1661)
                     /locus_tag="VLM17_02955"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HSR64550.1"
                     /translation="MARARAARRDPAREPLATVAAPPRRRARKASPVELDRTIHERVR
                     LAIVSALAGADALSFNELKALLGTSDGNLSVHARRLEEAGFVACEKSFVERVPRTAYR
                     LTAAGRRALDDYLDHMEALIQRVREG"
     gene            complement(1654..2265)
                     /locus_tag="VLM17_02960"
     CDS             complement(1654..2265)
                     /locus_tag="VLM17_02960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64551.1"
                     /translation="MSRPLRVDRPDPPLSLHDRAIEDLRFIRRTMERASAFTAVPGWG
                     GVAAGVLALPAALLASRQATALWWLATWLATAALAGLVVGATLVLKARRSGVPLTSGP
                     GRKFLLGFLPPVAAAAALTAALYLHGAHALLPGLWLLCYGAAVISAGTFSVRAVPLMG
                     IGFMALGAFALATPPAWADAWMAAGFGGLHIAFGLVIARRHGG"
     gene            2434..>4075
                     /gene="hutU"
                     /locus_tag="VLM17_02965"
     CDS             2434..>4075
                     /gene="hutU"
                     /locus_tag="VLM17_02965"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HSR64552.1"
                     /translation="MSTRKDTSRTIRAPRGATLNCRSWLTEAPFRMLQNNLDPDVAEN
                     PAELVVYGGIGRAARDWECYDAIIKSLKDLGDDETLLVQSGKPVGIFPTHADAPRVLL
                     ANSNLVPHWATWEHFNELDRKGLMMYGQMTAGSWIYIGSQGIVQGTYETFVEMGRQHY
                     AGNLTGKWILTAGLGGMGGAQPLAASLAGACSLTVECQQSRIDMRLRTRYVDEQATDL
                     DDALARIGKYTQAGQAKSIALLGNAAEILPELVRRGVRPDAVTDQTSAHDPVHGYLPL
                     GWTVEQWLAEQKNNPEHVRDMAKKSMRVHVEAMLAFQKMGVPTFDYGNNIRQMAKDEG
                     CTNAFDFPGFVPAYVRPLFCRGVGPFRWVALSGDPEDIYRTDAKVKELIPDDKHLHRW
                     LDMAKERISFQGLPARICWVGLGLRHKLGLAFNEMVRNGELKAPVVIGRDHLDSGSVA
                     SPNRETEAMKDGSDAVSDWPLLNAMLNVAGGATWVSLHHGGGVGMGYSQHSGVVIVCD
                     GSEAADKRIARVLWNDPGTGVMRHADAGYEIAKQCAKEQ"
BASE COUNT          624 a         1472 c         1429 g          550 t
ORIGIN      
        1 cctcggccca atccgtcggc accgccgtgc aggccacggt gcaggacgcc acccaggccg
       61 acgccgccaa ccgggacgtg cgcgaccaca cctgcctgcg cgagaccggt tcgctggtca
      121 ccgcttcgca gaaccggcgc gtcgttcgcc gcgcgcggaa ggacaaccag ccgaccgtcg
      181 aggtggtgtg cgccgactac ggccgtgcct acacccagga cgacatccgc ggcaccggcg
      241 cggtcgacat cgccgacgcg ctgcgccggc tggatccgag cgtgcactga gcccgccggc
      301 aaccgcacgg aaaaacgccc gggcctgccc gggcgttttc gtttccggtg gcggcaggcg
      361 cctacttcgc catcggcttg cggaacttgt atgcgaactg atcggtgtgg ccgcgcacgc
      421 tcgggtcgaa caccttgagc gaatggtcgt cggccgggtt ggccagcacc ctgctctcgc
      481 cgacgtattc gaagcccgcc gccagcacct gctgcttcac cagggccggg tcgatgcggt
      541 gcagggtgtc ggtgtcgcgc gtgccggagc cggcctgcgc cacgtggtcg atcacgatgt
      601 acgtgccgcc cggcttgagc gcggcgaaca cggccttgtt gagcagcgcc ggatcggtcg
      661 ggcccatgaa cttgtcggga tagtcgtggt agttctgcga ggtgaaggcc acgtccaccg
      721 gttccggcgt cgccagcgcg tcggccgcct gttccagcag cgacacgttc gggtagtccg
      781 ccggcagctt cttggtgtcg tccgagtact tctccatcgg cgccggaatc gccgcgtaca
      841 ccttgccgtc cggcccgacc accttgctga agacgcgcgt gaagtagccg ccaccgggca
      901 ccagttcgag caccttgtcg cccggcttca cgccggcgaa ggcgaccacc tcggcggcat
      961 ggcggttcgc gtccttcgcg cggtcggcat cgcggcccgg gtcggcgacc gcggcctgca
     1021 cgtaggccgg gatcgcgccg gccttcgccg cgtggtgcgc gtggtggttc gtgccggcga
     1081 gggcgacgcc gcccgcggcc gcgaggccgg cggcgaggag gaggggaacg gtcctttgca
     1141 tggtggtgcg ctcctgcggg ttggggacgc cgacgctagc aggttccggg cgcggcgccg
     1201 tctcgcggag gtcacggccg gcggtggcgc cagtccgggc aaagccgggt ggcgcgaggc
     1261 ggcggccgcg aggctcagcc ttcgcgcacc cgctggatca gcgcttccat gtggtcgagg
     1321 tagtcgtcga gcgcccggcg gcccgcggcg gtgaggcggt aggcggtgcg cggcacgcgt
     1381 tcgacgaacg acttctcgca cgccacgaac ccggcctcct cgagccgccg cgcatgcacg
     1441 ctgaggttgc cgtcgctggt cccgagcagc gccttgagtt cgttgaagct gagcgcgtcc
     1501 gcgcccgcga gcgcgctcac gatggccagg cgcactcgct cgtggatggt gcggtccagt
     1561 tcgaccggcg aggccttgcg cgcgcgcctg cgcggcggcg ctgcaacggt ggcgagcggt
     1621 tcgcgcgcgg ggtcgcgtcg cgccgcccgg gccctagcca ccgtggcgcc tcgcgatcac
     1681 gaggccgaag gcgatgtgca ggccgccgaa gccggccgcc atccacgcat cggcccacgc
     1741 gggcggcgtc gccagtgcga atgcgcccaa tgccatgaag ccgatgccca tcagcggcac
     1801 cgcgcgcacc gagaacgtgc ccgcgctgat caccgccgcg ccgtagcaca gcagccacag
     1861 cccgggcagc agtgcgtgcg ccccgtgcag atacagcgcc gccgtcagcg ccgcggccgc
     1921 ggccaccggc ggcaggaagc ccagcaggaa cttgcgcccc gggcccgagg tgagcggcac
     1981 gccggagcgc cgcgccttca gcaccagcgt ggcgccgacg acgagcccgg ccagcgccgc
     2041 ggtcgccagc caggtggcga gccaccacag cgcagtcgcc tggcgcgatg ccagcagcgc
     2101 cgcgggcagg gcgagcacgc cggcggcgac cccgccccag ccgggcaccg ccgtgaacgc
     2161 gctggcacgt tccatcgtcc ggcggatgaa gcgcaggtcc tcgatcgccc ggtcgtgcag
     2221 cgagagggga gggtcgggac ggtccacgcg cagggggcgg ctcatggggg taggggtata
     2281 gcctcgcacc tgaaaaccgt caagtacttt gcaacacaaa gactccgtcg gcggagcggc
     2341 cccgggcagg cgacgcgcgc gattggtccc gccggggcgg cgaggcggct gctccataat
     2401 cgcggcttcg cctcgttcgc caggttccgc cccatgtcga cccgcaagga caccagccgc
     2461 accatccgcg ccccgcgcgg tgccacgctc aactgcaggt cgtggctgac cgaagcgccg
     2521 ttccgcatgc tccagaacaa cctggatccg gacgtcgccg agaacccggc ggaactggtg
     2581 gtctacggcg gcatcggccg cgccgcgcgc gactgggagt gctacgacgc gatcatcaag
     2641 tcgctcaagg acctcggcga cgacgagacg ctgctcgtgc agtcgggcaa gccggtcggc
     2701 atcttcccca cgcacgccga cgcgccgcgc gtgctgctcg ccaactccaa cctcgtgccg
     2761 cactgggcca cgtgggagca cttcaacgag ctcgacagga agggcctgat gatgtacggc
     2821 cagatgacgg ccggcagctg gatctacatc ggctcgcagg gcatcgtgca gggcacgtac
     2881 gagaccttcg tcgagatggg ccgccagcac tacgctggca acctcaccgg caagtggatc
     2941 ctcaccgccg gcctcggcgg catgggcggc gcgcagccgc tcgccgcgtc gctcgccggc
     3001 gcgtgctcgc tcaccgtcga atgccagcag tcgcgcatcg acatgcgcct gcgcacccgc
     3061 tacgtcgacg agcaggccac cgacctcgac gacgcgctcg cccgcatcgg gaagtacacg
     3121 caggcggggc aggcgaagtc gatcgcgctg ctcggcaacg ccgcggaaat cctcccggaa
     3181 ctcgtgcgcc gcggcgtgcg cccggacgcg gtcaccgacc agacctccgc gcacgatccg
     3241 gtgcacggct acctgccgct cggctggacg gtcgagcagt ggctcgccga acagaagaac
     3301 aacccggaac acgttcgcga catggcgaag aaatccatgc gcgtgcacgt cgaggcgatg
     3361 ctcgccttcc agaagatggg cgtgccgacc ttcgactacg gcaacaacat ccgccagatg
     3421 gcgaaggacg aaggctgcac gaatgccttc gacttccccg gcttcgtgcc ggcctacgtg
     3481 cgtcctctct tctgccgcgg cgtcggcccg ttccgctggg tggcgctctc gggcgacccg
     3541 gaggacatct acaggacgga tgccaaggtc aaggaactca tccccgacga caagcacctg
     3601 caccgctggc tcgacatggc gaaggaacgc atcagcttcc agggcctgcc cgcgcgcatc
     3661 tgctgggtcg gcctcggcct gcgccacaag cttggcctcg ccttcaacga gatggtgcgc
     3721 aacggcgagc tgaaggcgcc ggtcgtcatc ggccgcgacc acctcgacag cggcagcgtc
     3781 gcctcgccca accgcgagac cgaagcgatg aaggacggca gcgatgccgt ctccgactgg
     3841 ccgctgctca acgccatgct caacgtcgcc ggcggcgcta cctgggtcag cctccaccac
     3901 ggcggcggcg tcggcatggg ctactcccag cactccggcg tcgtcatcgt ctgcgacggc
     3961 agcgaagccg ccgacaagcg catcgcgcgc gtgctgtgga acgaccccgg taccggcgtc
     4021 atgcggcatg cggatgcggg gtatgagatc gcgaagcagt gcgcgaagga gcagg
//
LOCUS       DATIQC010000140         2462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_327211, whole genome shotgun sequence.
ACCESSION   DATIQC010000140 DATIQC010000000
VERSION     DATIQC010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327211"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1157
                     /locus_tag="VLM17_02970"
     CDS             <1..1157
                     /locus_tag="VLM17_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010370553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSR64553.1"
                     /translation="GLTSIIPDMDPTRPAQADPRRLLHAIERFGVSQLFGSPALVAVL
                     ARHGAPLPGVRRVTSAGAPVPAEVVARMRSLLPAGAQLWTPYGATECLPVAVIEGREL
                     ETTRAATERGAGTCVGRAVAPNQVRIIRIGDDAIATWSDDLLVAPGQVGEITVAGPTA
                     TDTYWRREEATRLSKIREVLADAPPSAPAAHPSTCPGQALLPQAGEGEACAPFAAAGE
                     GNPGAAAVPPLRPAGEGRGEGAPCGERIVHRMGDLGWMDDEGRLWFCGRKSQRVVVDA
                     TTTLCTEQVEPVFNTHADVRRSALVGVGARGAQRPVLCVELREGVPAREWPRIERELR
                     HLGDGFVHTAKVAAFLRHPRFPVDIRHNAKIGRETLALWAARRLPGGAGA"
     gene            1154..2164
                     /gene="oleD"
                     /locus_tag="VLM17_02975"
     CDS             1154..2164
                     /gene="oleD"
                     /locus_tag="VLM17_02975"
                     /EC_number="1.1.1.412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003854 - 3-beta-hydroxy-delta5-steroid
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006694 - steroid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-alkyl-3-oxoalkanoate reductase"
                     /protein_id="HSR64554.1"
                     /translation="MRILVTGGGGFLGQALCRGLVERGHAVTSFNRGRYPALDDLGVR
                     QLQGDLADRDAVLRAFAGLDAAGFDGVFHNAAKAGAWGSYDSYHRANVIGTDNVIAAC
                     RAHGIGRLVYTSTPSVTHRATHPVEGGTADSVPYGEGFKAPYAATKAIAERAVLAAND
                     ASLATVALRPRLIWGPGDQQLLPRLAERARAGRLRLVGTGDNLVDTTYIDNAAQAHFD
                     AFDHLAPGAACAGRAYFISNGEPKPVRAIVNALLAAAGAPPVTKTVPFALAYAIGAAC
                     EAAWTLLPLDGEPPLTRFLAEQLSTTHWYSMAPAARDFGYVPRVSIGEGLARLAAAFR
                     GA"
     gene            2236..>2462
                     /locus_tag="VLM17_02980"
     CDS             2236..>2462
                     /locus_tag="VLM17_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HSR64555.1"
                     /translation="MPALPFNWKVPAGRALEAALNRALALDPDTRAGLSALDGQRVAL
                     HLESKSGALPPLALQVRVDGGRLAVGPVEGER"
BASE COUNT          302 a          926 c          922 g          312 t
ORIGIN      
        1 tgggcctgac ctcgatcatc cccgacatgg atcccacgcg cccggcgcag gccgacccgc
       61 gccggctgct gcacgcgatc gagcgctttg gcgtgagcca gctgttcggc tcgccggcgc
      121 tggtcgcggt gctggcgcgg catggggcgc cgctgcccgg cgtgcgccgc gtcacctcgg
      181 ccggcgcgcc ggtgcccgcc gaggtggtgg cgaggatgcg cagcctgctg ccggccggcg
      241 cgcagctgtg gacgccgtac ggcgccaccg agtgcctgcc ggtggcggtg atcgagggcc
      301 gcgagctgga gaccacgcgc gcggccaccg agcgcggcgc cggcacctgc gtcggccgcg
      361 cggtggcgcc gaaccaggtg cgcatcatcc gcatcggcga cgatgcgatc gccacctgga
      421 gcgacgacct gctggtcgcg cctggccagg tcggcgagat cacggtggcc ggcccgaccg
      481 cgacggacac gtactggcgc cgcgaggagg cgacgcggct gtccaagatc cgggaagtac
      541 tggcggacgc gcccccatcc gcccccgcgg cgcacccttc gacatgccca gggcaggcgc
      601 ttctcccgca ggcgggagaa ggggaggcct gcgcgccttt cgcagcggcg ggggaaggca
      661 accctggcgc cgccgctgtt ccccctctcc ggcccgcggg agagggccgg ggcgagggcg
      721 cgccgtgcgg tgaacgcatc gtccatcgca tgggcgacct cggctggatg gacgacgaag
      781 gccggctgtg gttctgcggg cgcaagtcgc agcgcgtggt ggtggacgcg acgaccacgc
      841 tgtgcaccga gcaggtcgag ccggtgttca acacccacgc cgacgtgcgc cgcagcgcgc
      901 tggtcggcgt cggggcgcgt ggcgcgcagc ggccggtgct gtgcgtggaa ctgcgcgaag
      961 gcgtgccggc gcgcgagtgg ccgcggatcg agcgcgagct gcgccacctc ggcgacggct
     1021 tcgtgcacac cgccaaggtg gccgccttcc tgcgccaccc gcgcttcccg gtcgacatcc
     1081 gccacaacgc caagatcggc cgcgagacgc tggcgctgtg ggcggccagg cggctgcccg
     1141 ggggcgccgg cgcatgagga tcctcgtgac gggcggcggc ggcttcctcg gccaggcgct
     1201 gtgccgtgga ctggtcgagc gcggccatgc cgtcaccagc ttcaaccgcg gccgctatcc
     1261 cgcgctcgat gacctcggcg tgcgccagct gcagggcgac ctcgccgatc gcgacgcggt
     1321 gctgcgtgcg ttcgccggct tggatgcggc cggcttcgat ggcgtattcc acaacgccgc
     1381 caaggccggc gcatggggca gctacgacag ctatcaccgc gcgaacgtca tcggtaccga
     1441 caacgtcatc gccgcgtgcc gcgcgcacgg catcgggcgg ctcgtgtaca cgtctacccc
     1501 gagcgtgacc caccgcgcga cgcatcccgt cgaaggcggc accgccgaca gcgtgcccta
     1561 cggcgaaggc ttcaaggcgc cgtacgcggc gaccaaggcg atcgccgagc gcgcggtgct
     1621 cgcggcgaac gacgcttcgc tggccaccgt ggcgctgcgc ccgcgcctga tctggggccc
     1681 gggcgaccag cagctgctgc cgcgcctggc cgaacgcgcg cgcgccggac ggctgcgcct
     1741 ggtcggcacc ggcgacaacc tggtcgacac cacctacatc gacaacgccg cgcaggcgca
     1801 cttcgacgcc ttcgaccacc ttgcgcccgg cgccgcctgc gcggggcgcg cctacttcat
     1861 cagcaacggc gagccgaagc cggtgcgcgc gatcgtcaac gccctgctcg ccgccgccgg
     1921 cgcgccgccg gtgacgaaga ccgtgccgtt tgcgctggcg tacgcgatcg gcgcggcctg
     1981 cgaggcggcg tggaccctgc tcccgctcga cggcgaaccg ccgctcaccc gttttcttgc
     2041 ggagcagctg agcaccacgc actggtacag catggcgccc gccgcgcggg atttcggcta
     2101 cgtcccgcgc gtttccatcg gcgaggggct cgcgcggctg gcggcggcct tccgcggcgc
     2161 ctgacgcccg tcgcgcgcgg cggtgcggca ccggcctgca ccgcgccgcc tgtgccgcgc
     2221 cgctagaatg ccgcgatgcc cgcgctcccc ttcaactgga aagtgcccgc cggccgcgcg
     2281 ctggaggcgg cgctgaaccg tgcgctcgcg ctcgaccccg acacccgcgc cggcctgtcc
     2341 gcgctcgatg gccagcgggt ggcgctgcac ctggagtcga agagcggcgc gctgccgccg
     2401 cttgcgctgc aggtgcgggt ggacggcggg cgcctcgcgg tcggtccggt cgagggcgag
     2461 cg
//
LOCUS       DATIQC010000141         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_610040, whole genome shotgun sequence.
ACCESSION   DATIQC010000141 DATIQC010000000
VERSION     DATIQC010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610040"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(70..288)
                     /gene="infA"
                     /locus_tag="VLM17_02985"
     CDS             complement(70..288)
                     /gene="infA"
                     /locus_tag="VLM17_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011217896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HSR64556.1"
                     /translation="MAKDDVIEFEGTVSETLPNTMFRVKLENGHEIIAHISGRMRKNY
                     IRILTGDRVKVEMTPYDLTKGRITYRHR"
     gene            complement(327..1109)
                     /gene="aat"
                     /locus_tag="VLM17_02990"
     CDS             complement(327..1109)
                     /gene="aat"
                     /locus_tag="VLM17_02990"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HSR64557.1"
                     /translation="MSRSPPVPPLLGEAPDSPFPPASAALRDPDGLLAIGGDLSPVRL
                     LNAYRHGIFPWFSRGQPILWWSPDPRMVFRTDRVRLSSRLRRELRKSAWTVRADTAFA
                     RVIAACARAPRPGQRGTWITPEMEAAYVRLHGLGHAHSVEVFEGEALVGGIYGVAIGR
                     MFFGESMFSARSGGSKVALAALARVLHGWGWPLVDAQVEGAHLVSLGAESVPRGEFLA
                     LVARLADAPEPPGPWTARFGAWPAARLADPSAFCAIPGRVSE"
     gene            complement(1106..>1582)
                     /locus_tag="VLM17_02995"
     CDS             complement(1106..>1582)
                     /locus_tag="VLM17_02995"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64558.1"
                     /translation="AMHDFYRATFAEYGNTPALTLEFLRHLARAMPRQLVLFLAVRDG
                     RNIAGALCLRGVDTLYGRYWGASENVPGLHFETCYYQGIEYCLREGLHAFEPGAQGEH
                     KLARGFLPTLTRSRHWVAHPAFAEALARWCAEEAEAVRRYADTLRAHGPFRHEGGR"
BASE COUNT          241 a          553 c          576 g          212 t
ORIGIN      
        1 caggcaccaa tgcgaaacgc cccttgcggg gcgtttcggg aagaaatccg tcgggcgaac
       61 cggtacggtt cagcgatggc ggtaggtgat ccggcccttg gtcaggtcgt aaggcgtcat
      121 ttccaccttg acccggtcgc cggtcagaat gcggatgtag ttcttgcgca tgcggccgga
      181 gatgtgggcg atgatctcgt ggccgttctc gagcttgacc cggaacatgg tgttcgggag
      241 ggtctcggaa accgtgcctt cgaattcgat gacgtcgtct ttcgccatgt gtccaatgcc
      301 gggcggaacg gccgccacga agtccgtcat tctgacacgc gcccggggat ggcgcaaaag
      361 gcggaggggt ccgccagccg ggcggccggc catgcgccga accgggccgt ccacgggccc
      421 ggtggctccg gggcgtccgc cagccgggcc accagtgcca ggaactcccc ccgcggcacg
      481 ctttcggcgc ccagtgacac caggtgcgcg ccttcgacct gggcgtcgac cagcggccag
      541 ccccagccat gcagcacgcg ggcgagggcc gccagggcga ccttggaacc gccgctgcgc
      601 gcgctgaaca tgctttcgcc gaagaacatc cgcccgatcg ccaccccgta gatcccgccg
      661 acgagggcct cgccctcgaa cacctccacc gaatgcgcat gcccgaggcc gtgcaggcgg
      721 acgtacgcgg cctccatctc cggcgtgatc caggtgccgc gctggcccgg tcgtggcgca
      781 cgcgcgcagg ccgcgatgac ccgggcgaag gccgtgtcgg cgcgcacggt ccaggcgctc
      841 ttccgcagct cccggcgcaa gcgcgacgaa agccgcacgc gatcggtgcg gaacaccatg
      901 cgcgggtccg gcgaccacca caggatcggc tggccgcggg aaaaccacgg aaagatcccg
      961 tgccggtagg cgttgagcag gcggacgggg ctgaggtcgc cgccgatcgc gagcagtccg
     1021 tcgggatcgc gcagcgcggc cgacgcgggc gggaaggggc tgtccggggc ctcgccgagc
     1081 agcggcggca cgggcggcga ccggctcacc ggccgccctc gtgccggaag gggccatggg
     1141 cccgcagcgt gtccgcgtac cggcgcaccg cctccgcctc ctcggcgcac cagcgcgcga
     1201 gcgcttcggc gaaagccggg tgcgcgaccc agtggcggct gcgcgtcagc gtgggcagga
     1261 agccgcgcgc cagcttgtgc tcgccctgcg cgccgggttc gaacgcgtgc aggccctcgc
     1321 gcaggcagta ctcgatgccc tggtagtagc aggtctcgaa gtgcaggccg ggcacgttct
     1381 cgctcgcgcc ccagtagcgc ccgtaaagcg tgtcgacgcc gcgcaggcag agcgcaccgg
     1441 cgatgttgcg gccgtcgcgc acggcgagga acagcaccag ttgccgcggc atcgcccggg
     1501 cgaggtggcg caggaactcc agggtcaatg ccggggtgtt gccgtactcc gcgaacgtcg
     1561 cgcggtagaa gtcgtgcatc gc
//
LOCUS       DATIQC010000142         7732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_503849, whole genome shotgun sequence.
ACCESSION   DATIQC010000142 DATIQC010000000
VERSION     DATIQC010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7732
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503849"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1152)
                     /locus_tag="VLM17_03000"
     CDS             complement(<1..1152)
                     /locus_tag="VLM17_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003489332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HSR64559.1"
                     /translation="MIWTILVTVILTVLAVAIAMNFATPEKQLERKIEHRYAVADPQF
                     RREMGVMLGPAIVPGNRIEDLENGDEIFPAMLAAIRGARKTITFETYIYWSGHVGQEF
                     ADALSERARAGVAVNVTIDWVGSITMDEKQLKEMQDAGVRVERYRPLHWYNIGRLNNR
                     THRKLLVIDGSVGFTGGVGIGDPWQGHAQDPDHWRDIHFRVEGPVVAQMQAAFNDNWI
                     KTTGEVLNGAGYFPPLQPAGDVDAHMFISSPASGAESMHLMYLLAIAAAEHSIDLEAA
                     YFIPDALISRALVAARQRGVKVRVLVPGKNTDSDAARMASKAAWGPLLRAGVDIHEYD
                     PTMFHNKMLIVDHLLVSVGSTNFDLRSFQLNDEASLNVYDHAFAERMTKV"
     gene            1315..3564
                     /locus_tag="VLM17_03005"
     CDS             1315..3564
                     /locus_tag="VLM17_03005"
                     /inference="COORDINATES: protein motif:HMM:NF020509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HSR64560.1"
                     /translation="MDVPPRYWAFLSYSHADRRMAEKLHRALEGYRIPRRLVGRRVEG
                     GGRDVVPSRLFPVFRDRDELDARGEIGSVVEAALAASRALVVLCSPASARSQWVEAEI
                     EAFRRLHPDAPVLCVLLGGEPLATGDAPASLHGCLGPTLRARFGQGVGTADRAPVAVD
                     LRDGGDGWRLGLQKLIAGLAGVPLGELVQRDAQRRHRRMAWLAAVLAAIAVGFGALAS
                     VALLARNDAQRRQAQAEDLLGFMLGDLRGKLQKVGRLDLLDSVGDKAMGYFDSLDPRD
                     LNDRTLAWQEQALTQLGQVRLNQARYPEALASFRSAYARSSALVDRHPGDGNLLFDRG
                     QAEYWIGFVEWQRRDLDRAQSWLTRYRDTCRAVHAIDPKRIEWVHELAYGDYNLATVE
                     LERGQLARAAEGFRRANATLQVVAAKTPEDPQVAFEIADNLSWQGNVEEQLGHLDRAT
                     RLMAAKVDGVRKIAAAQPKDPGWKFEWANAQLVQAAVEDARGRHAEAEALADDALARM
                     RGLVAFDPDNKDWRRAYLRALIRRAAARAGQGRVAEARADLAAAQPLVDASARLASSD
                     RLVRREMLDALTLRGLLALQAGDRPGAEAASAQLQALYRDAAKPDSAEEAGRYASSQL
                     VIGWVAAQAGNDAGAATHFHAARSALQPLAGDSRYWRVLDPWVRVALLTGDAAAAGQA
                     QARLAGSGYVPLFPWPPNGTATTHLRASRDARIAATPCAPRARHGDALPGPATCDAPF
                     PRRSTGAMT"
     gene            3561..3986
                     /locus_tag="VLM17_03010"
     CDS             3561..3986
                     /locus_tag="VLM17_03010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64561.1"
                     /translation="MKTPGDTEATPVNIDIDITWNGTQPTYSFSGNNVSSDGTIDLSA
                     LADAANIQFSLVSAGGEMFEADHAIAVMPMNNPNNCPAKGSGHASPVFSDPTVSDTRR
                     ALSITDHNGSSSGQFKYALFMTNSNNQPIAACDPVIINR"
     gene            3987..5672
                     /locus_tag="VLM17_03015"
     CDS             3987..5672
                     /locus_tag="VLM17_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64562.1"
                     /translation="MDVPAQRAVVPATALVLGVTSHRDLRAEEVPPLRRFLDEAIGRL
                     RDAFPGLSLALLSPLAEGGDQLVAEVALAHGARLYVPLPMPVELYLDDFPDAEARARF
                     LALLAQATPIQLASPGLDLDRLRTPGPGRDHQDLAAGLHVANHCHLLMALWDGSDDGG
                     RGGTAEIVRYYLGGPLPGARRATDNLRQMLAGDDDSLVLHVPVRRASVPSAPTPPPPR
                     WLTSAGARAYAAGMPPDYRRIFERMQVFERDRRRLARGMGPGRADADEVDRALAVVDA
                     MAVHYQRLMTSAMRTIHVLAVVMGLSFLLYSDLGAPSWMLWVFLLFFAVGLLAASTAH
                     RYDWHRKYIDYRALAEGIRVQSFWRRACLQVEGDPEFAHDNFLQKQDVELGWIRNVMR
                     QLGLQPLPPCDDPAAAVDAVVEEWVGRPGESGQLGYYARKAALRARHHQRTRALGAAC
                     LWAGIAISLLLAAAHNLLPLAVQNVLVTVMGALSLVAAVREAYSYRKADKELVKQYRF
                     MQRIYGNARIALDAARGTREKREILRALGEAALAEHAEWALMHRDRPIEHGKP"
     gene            complement(5688..6017)
                     /locus_tag="VLM17_03020"
     CDS             complement(5688..6017)
                     /locus_tag="VLM17_03020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64563.1"
                     /translation="MQTLIQVVCSKGRSLREAIAGDARLVRHDLQVVLQKRSGRSHGW
                     AKLRSTLPDRRGAINLEWDANTSVLISRVVTRGKGRPNLIIGDFIDYLLARHARRVQA
                     INIIPRD"
     gene            complement(6152..>7732)
                     /locus_tag="VLM17_03025"
     CDS             complement(6152..>7732)
                     /locus_tag="VLM17_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HSR64564.1"
                     /translation="WLEPHIEGSADGGREARARIVLATVKGDVHDIGKNIVGVVLACN
                     NFEVIDLGVMVPAQAILDRAKAERADLIGLSGLITPSLEEMGHVAREMQRQGFTVPLL
                     IGGATTSRAHTALKIDPHYKAPTVWVKDASRAVGVAQSLISAELRAPFVAANDADYAE
                     IRERHRNRDGGKRLVSLEKARAQRFDGGWGDYLPPAPRQPGVHVFDDYPLDEIAAYID
                     WTPFFNTWELAGRHPAILDDAVVGAQARELFGDAQAMLARIVAEKWLRAKAVVGLWPA
                     HGVGDDVVVSLPSPAVEGARRAEGGNASLRSPPPHPSPASGRERTTTLHFLRQQADKP
                     ADRPDFCLADFIAPKESGRQDWIGAFAVTAGLGIEEHLARFQADHDDYNAILLKALAD
                     RLAEAFAELLHRRVRREFWAYATDEALDNDALIAERYRGIRPAPGYPACPDHSEKATL
                     FRLLDAQANAGITLTESFAMYPAAAVSGYYFSHPRSQYFVVGRLSKEQVADYARRKGA
                     SLQQAERWLASNLDYDPE"
BASE COUNT         1054 a         2794 c         2758 g         1126 t
ORIGIN      
        1 caccttggtc atgcgttcgg cgaaggcgtg gtcgtagacg ttgaggctgg cttcgtcgtt
       61 gagctggaac gagcgcaggt cgaagttggt cgagccgacc gacaccagca gatgatccac
      121 gatcagcatc ttgttgtgga acatcgtcgg gtcgtactcg tggatgtcca cccccgcccg
      181 cagcagcgga ccccacgcgg ccttcgacgc catgcgcgcg gcgtccgagt cggtgttctt
      241 gccgggcacc agcacgcgga ccttcacccc gcgctggcgc gcggcgacca gcgccctgct
      301 gatcagcgcg tccgggatga agtaggcggc ctcgaggtcg atgctgtgct ccgccgcggc
      361 gatcgccagc aggtacatca ggtgcatgct ctcggcgccg ctggcgggcg agctgatgaa
      421 catgtgcgcg tccacgtcgc ctgccggctg cagcggcggg aaatagccgg cgccgttgag
      481 cacctcgccg gtggtcttga tccagttgtc gttgaacgcg gcctgcatct gcgcgacgac
      541 cgggccctcg acgcggaagt ggatgtcgcg ccagtggtcc gggtcctgcg catggccctg
      601 ccagggatcg ccgatgccga ccccgccggt gaatccgacg ctgccgtcga tgaccagcag
      661 cttgcggtgg gtgcggttgt tgaggcggcc gatgttgtac cagtgcagcg gccggtaacg
      721 ttccacccgc acgccggcgt cctgcatctc cttcagctgc ttctcgtcca tcgtgatgct
      781 tccgacccag tcgatggtga cgttgaccgc cacgccggcg cgcgcgcgct cggacagcgc
      841 gtcggcgaac tcctggccga cgtggcccga ccagtagatg taggtctcga aggtgatggt
      901 cttccgcgcg ccgcggatgg ccgccagcat cgccgggaag atctcgtcgc cgttctcgag
      961 gtcctcgatc ctgttgccgg gcacgatcgc cgggccgagc atcacgccca tctcgcggcg
     1021 gaactgcggg tcggccacgg cgtagcggtg ctcgatcttg cgctcgagct gcttctcagg
     1081 ggtggcgaag ttcatcgcga tcgcgaccgc gagcacggtc aggatcacgg tgacgaggat
     1141 ggtccagatc atgcgcttgc gattccaacg gccaggcacg aagcagcgct ccacgacgcg
     1201 ggtgcgcatt catcctcgtg gccggcgctt gaccgcggcg tgaaagcggc cgcggatggc
     1261 cgggactgcg ggacgggggc gttcaccggg tatcgacctc ccccgggcga tggcttggac
     1321 gttcccccgc gttactgggc cttcctcagc tacagccatg ccgaccgccg catggccgag
     1381 aagctgcacc gtgccctcga gggttaccgc attccgcgcc ggctggtcgg acgccgggtc
     1441 gaaggcggcg ggcgcgacgt ggtgccgtcg cgcctgtttc cggtcttccg cgatcgcgac
     1501 gaactcgacg cgcgtggcga gatcggcagc gtggtcgagg ccgcgctcgc cgccagccgc
     1561 gcgcttgtgg tgctgtgctc gccggcgtcg gcgcgttcgc aatgggtgga ggcggagatc
     1621 gaggcgttcc gccgcctgca tccggacgcg ccggtgctgt gcgtcctcct cggcggcgag
     1681 cccctggcga ccggcgatgc gccggcatcg ctgcacggat gcctcgggcc caccctgcga
     1741 gcgcgcttcg gccagggcgt gggcaccgcc gaccgcgcgc cggtcgcggt cgacctgcgt
     1801 gacggcggcg acggctggcg gctcggcctg cagaagctga tcgctggatt ggccggcgtg
     1861 ccgctgggcg aactggtgca gcgtgacgcg cagcgccggc accggcgcat ggcctggctg
     1921 gcggcggtgc tggcggcgat tgccgtcggg ttcggcgcgc tcgcctcggt cgcgctgctc
     1981 gcccgcaacg acgcgcaacg gcggcaggcg caggccgagg acctgctcgg cttcatgctc
     2041 ggcgacctgc gcggcaagct gcagaaggtc ggccggctcg acctcctcga cagcgtcggc
     2101 gacaaggcga tggggtactt cgacagcctc gatccgcgcg acctcaacga ccgcacgctc
     2161 gcctggcagg agcaggcgct cacccagctc ggccaggtgc ggctcaacca ggcgcgctat
     2221 cccgaagcgc tggccagctt ccggagcgcc tacgcccgca gcagcgcgct ggtggaccgc
     2281 catcccggcg acggcaacct gctgttcgac cgcgggcagg cggaatactg gatcggcttc
     2341 gtcgagtggc agcggcgcga cctcgaccgc gcgcaatcgt ggctcacgcg ctaccgcgac
     2401 acctgccggg cggtccatgc gatcgacccg aagcggatcg aatgggtgca cgaactggcc
     2461 tacggcgact acaacctcgc cacggtcgag ctcgagcgcg ggcagctcgc gcgcgccgcc
     2521 gagggattcc ggcgcgccaa cgccaccctg caggtcgtcg ccgcgaaaac gccggaagat
     2581 ccgcaggtgg cattcgagat cgccgacaac ctgtcgtggc agggcaacgt cgaggagcag
     2641 ctcggccatc tcgaccgcgc gacccggctg atggcggcga aggtcgacgg cgtcaggaag
     2701 atcgcggccg cgcagccgaa ggacccgggc tggaagttcg aatgggcgaa cgcccagctg
     2761 gtgcaggcgg cggtggagga cgcgcgcggc cggcacgcgg aggccgaagc cctcgccgac
     2821 gatgcgctcg cgcgcatgcg cgggctggtc gccttcgacc cggacaacaa ggactggcgg
     2881 cgcgcctatt tgcgcgcgct gatccggcgg gccgcggcgc gcgcggggca gggccgtgtc
     2941 gcggaggcgc gcgccgacct cgcggcggcg caaccgctgg tcgatgcgtc cgcgcgcctg
     3001 gcatcgtccg accgcctggt gcggcgcgag atgctcgacg cgctcaccct gcgcggcctg
     3061 ctggccctgc aggccggcga ccggccgggg gcggaggccg cgtcggcgca actccaggcc
     3121 ctgtaccgcg atgccgcgaa gcccgactcg gcggaagaag cggggcgcta cgcatcgagc
     3181 cagctggtca tcggctgggt cgccgcgcag gcgggcaacg acgcgggcgc ggccacccat
     3241 ttccacgccg cgcgctccgc cctgcaaccg ctggcgggcg attcccgcta ctggcgcgtg
     3301 ctcgatccgt gggtgcgcgt ggcgctgctg accggcgacg ccgccgccgc cgggcaggcg
     3361 caggcgcggt tggccggaag cggctacgtc cccctgtttc cgtggccgcc gaatggcacg
     3421 gcgacgacgc accttcgcgc atcgcgcgat gcgcggatcg ccgccacgcc ctgcgcgccc
     3481 cgcgcccgcc acggcgacgc cctcccgggg cccgccacgt gcgacgcacc cttcccccgc
     3541 cgctccacag gagccatgac atgaagacgc caggcgatac cgaagccacc ccggtcaaca
     3601 tcgacatcga catcacctgg aatggaacgc agccgacgta ttcgttctcg ggcaacaacg
     3661 tgagcagcga cgggacgatc gacctgtcgg cgctggcgga cgccgcgaac atccagttct
     3721 cgctcgtctc cgccggcggg gagatgttcg aagccgacca tgcgatcgcc gtcatgccga
     3781 tgaacaaccc gaacaactgc cccgccaagg gcagcggtca cgcatcgccg gtcttcagcg
     3841 atccgacggt gagcgatacc cgccgggccc tgtcgatcac cgaccacaac ggttcgagca
     3901 gcggccagtt caagtacgcg ctgttcatga ccaacagcaa caaccagccg atcgccgcct
     3961 gcgacccggt gatcatcaac cgctgaatgg acgtgccggc gcagcgggcc gtcgtgccgg
     4021 ccaccgccct ggtcctcggc gtcaccagcc accgggacct gcgggcggag gaggtgccgc
     4081 cgctgcgacg cttcctcgac gaagcgatcg gccgcctgcg cgacgcattc ccggggctgt
     4141 cgctggcgct gctctcgccg ctggccgagg gcggcgacca gctcgtcgcg gaagtcgcgc
     4201 tcgcgcacgg cgcgcggctg tacgtgccgc tgccgatgcc ggtcgagctg tacctcgacg
     4261 acttccccga cgccgaagcc cgcgcgcgct tcctcgcgct gctggcgcag gccacgccga
     4321 tccagctggc gtcgcccggg ctcgacctcg atcgcctgcg cacgcccggg ccgggtcgcg
     4381 accaccagga cctcgccgcc ggcctgcacg tcgccaacca ttgccacctg ctgatggcgt
     4441 tgtgggacgg cagcgacgac ggcggccgcg gcggcaccgc ggaaatcgtc cgctactacc
     4501 tcggcgggcc gttgcccggt gcgcgccgcg ccaccgacaa cctgcggcag atgctggccg
     4561 gcgacgacga cagcctggtg ctgcacgtcc cggtgcgccg cgcctcggtg ccgtcggcgc
     4621 caaccccgcc gccgccgcgc tggctgacca gtgccggcgc gcgcgcgtac gccgccggca
     4681 tgccgccgga ctaccggcgc atcttcgagc gcatgcaggt gttcgagcgc gaccgccgcc
     4741 ggctggcgcg cggcatgggc cccggccgtg ccgacgccga cgaggtcgac cgtgcgctcg
     4801 ccgtggtcga cgcgatggcc gtgcactacc agcgcctgat gacctcggcg atgcgcacca
     4861 tccatgtgct cgcggtggtc atgggcctgt cgttcctgct gtactccgac ctcggtgcgc
     4921 cgagctggat gctgtgggtg ttcctgctgt tcttcgcggt cggcctgctc gccgccagta
     4981 ccgcgcaccg ctacgactgg caccgcaagt acatcgacta ccgcgcgctg gccgaaggca
     5041 tccgcgtgca gtcgttctgg cgccgcgcct gcctgcaggt ggagggcgac ccggagttcg
     5101 cgcacgacaa cttcctgcag aagcaggacg tcgagctcgg ctggatccgc aacgtcatgc
     5161 gccagctcgg gctgcagccg ctgccgccct gcgacgatcc cgcggcggcg gtggatgcgg
     5221 tggtcgagga gtgggtcggc cggccgggcg aatcgggcca gctgggctac tacgcgcgca
     5281 aggccgcgct gcgcgcgcgc caccaccagc gcacccgggc gctcggggcg gcctgcctgt
     5341 gggcgggcat cgcgatcagc ctgctcctcg cggccgcgca caacctgctg ccgctggcgg
     5401 tgcagaacgt actggtgacg gtgatgggcg cgctgtcgct ggtcgccgcc gtgcgcgagg
     5461 cctattccta ccgcaaggcc gacaaggagc tggtcaagca gtaccgcttc atgcagcgca
     5521 tctacggcaa cgcccgcatc gcgctcgatg ccgcccgcgg cacccgcgag aagcgcgaga
     5581 tcctgcgcgc gctgggcgaa gccgcgctgg ccgagcacgc cgagtgggcg ctgatgcacc
     5641 gcgaccggcc gatcgagcac ggcaagccgt gacggcgccg cgcgccatca atcccgcggg
     5701 atgatgttga tcgcctgcac gcgccgcgcg tggcgggcca gcaggtagtc gatgaagtcg
     5761 ccgatgatca ggttgggcct gcccttgccc cgcgtcacca cgcggctgat gagcacgctg
     5821 gtgttggcgt cccattccag gttgatcgcg ccgcggcggt cggggagggt gctgcggagc
     5881 ttggcccagc cgtggctgcg accggagcgc ttctggagca ccacctgcag gtcgtggcgc
     5941 accaggcgcg cgtcaccggc gatcgcctcg cggaggctgc gtcccttgct gcacaccacc
     6001 tggatgagcg tctgcatggc tgccccgggt ctccgccacc ggccgtggcc cgcgccgatc
     6061 gtaatccgcg ccggggcggc cttgaagcgc gggcccggcc gccgggccgt cgcccgcgac
     6121 gaaccggacg cttggggccg cccggaatcc actactccgg gtcgtaatcc aggttgctcg
     6181 ccagccagcg ctcggcctgc tgcagcgacg cgcccttgcg ccgcgcgtag tcggccacct
     6241 gttccttcga caacctcccg accacgaaat actggctgcg cggatggctg aagtagtagc
     6301 ccgacaccgc cgccgccggg tacatcgcga agctctcggt cagggtgatg ccggcattgg
     6361 cctgcgcatc gagcaggcgg aacagcgtgg ccttctcgct gtggtccggg caggccgggt
     6421 agccgggcgc cgggcggatg ccgcggtagc gttcggcgat cagcgcgtcg ttgtcgagcg
     6481 cctcgtcggt ggcgtaggcc cagaactcgc ggcgcacgcg ccggtgcagc agctcggcga
     6541 aggcctcggc gaggcggtcg gcgagcgcct tgagcaggat cgcgttgtag tcgtcgtggt
     6601 cggcctggaa gcgcgccagg tgttcctcga tgccgagccc ggcggtgacc gcgaacgcgc
     6661 cgatccagtc ctgccgcccg gattccttcg gcgcgatgaa gtcggccagg cagaagtcgg
     6721 gccggtcggc cggcttgtcg gcctgctggc gcaggaagtg cagggtggtg gtgcgctccc
     6781 tcccgcttgc gggggagggg tggggtgggg gtgagcggag cgacgcgttg cccccctccg
     6841 ccctgcgggc tccttccacc gcgggcgacg gaagggagac gaccacgtcg tcgccgacgc
     6901 catgcgccgg ccacagcccg accaccgcct tcgcccgcaa ccacttctcc gcgacgatgc
     6961 gggccagcat cgcctgcgcg tcgccgaaca gctcgcgcgc ctgcgcgccg accaccgcat
     7021 cgtcgaggat cgccggatgg cggccggcca gctcccaggt gttgaagaac ggcgtccagt
     7081 cgatgtatgc ggcgatctcg tccagcgggt agtcgtcgaa cacgtgcacg cccggctgcc
     7141 gcggcgcggg cggcaggtag tccccccagc cgccgtcgaa gcgctgcgcg cgcgccttct
     7201 ccagcgacac cagccgcttg ccgccgtcgc ggttgcggtg ccgttcgcgg atctccgcgt
     7261 agtcggcgtc gttcgcggcg acgaacggcg cgcgcagctc ggcgctgatc agcgactgcg
     7321 ccacgcccac cgcgcgcgac gcatccttca cccacaccgt cggcgccttg taatgcgggt
     7381 cgatcttcag cgcggtgtgc gcccgggagg tggtggcgcc gccgatcagc aggggcaccg
     7441 tgaagccctg ccgctgcatc tcgcgggcga catgccccat ttcctccagc gacggcgtga
     7501 tcagcccgga caggccgatc aggtcggcgc gctcggcctt cgcgcggtcg aggatcgcct
     7561 gcgccggcac catcacgccg aggtcgatca cctcgaagtt gttgcaggcc aggaccacgc
     7621 cgacgatgtt cttgccgatg tcgtggacgt cgcccttgac cgtggccagc acgatgcggg
     7681 ccctggcctc ccggccaccg tcggcggagc cctcgatgtg cggctccagc ca
//
LOCUS       DATIQC010000143         1550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_80319, whole genome shotgun sequence.
ACCESSION   DATIQC010000143 DATIQC010000000
VERSION     DATIQC010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80319"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VLM17_03030"
     CDS             <1..220
                     /locus_tag="VLM17_03030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012607273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HSR64565.1"
                     /translation="PAGTREGHNDWQRAGFGAPCPPKGRHRYVHTLYALDTLLPDLHA
                     PDKAALLRAMHGHVLAQARLVGTYERRH"
     gene            complement(522..677)
                     /locus_tag="VLM17_03035"
                     /pseudo
     CDS             complement(522..677)
                     /locus_tag="VLM17_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005409695.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KGG domain-containing protein"
     gene            complement(869..>1550)
                     /locus_tag="VLM17_03040"
     CDS             complement(869..>1550)
                     /locus_tag="VLM17_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005911636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HSR64566.1"
                     /translation="LSIYEGITHLRHPEPMQRPLINYAVLALSGVFEGGSWWVAMRSF
                     RKAKGTRGWFEAFRASKDPSTFTVLFEDSAALLGLLIAAVGVAGSQLFQRPTLDGVAS
                     IGIGLVLCVAALLLARETKGLLIGESAHPRVRSDILRIAGTDAAIRRANGVFTVQLGP
                     DSVVAALSAEFEDALGTPDIEQCVNRIEAAVRAAHPDVVALFVKPQTARTWQRRISRL
                     HDDDEPLP"
BASE COUNT          211 a          574 c          515 g          250 t
ORIGIN      
        1 gccagccggc acgcgcgagg ggcacaacga ctggcaacgc gccggattcg gcgcgccgtg
       61 cccgccgaag ggccggcacc gctacgtgca caccctgtat gcgctggaca cgctgctgcc
      121 cgacctgcac gcgccggaca aggcggcgtt gctgcgcgcg atgcacggac acgtcctcgc
      181 gcaggcgcgg ctggtcggca cctacgagcg tcggcactga cgcaacaaaa agggcgcccg
      241 cgggtgcggg cgccctgtct caccaggatg tggcgctgct agcggttgcc gcctccgcga
      301 tggccgccac ccgcgtggct tccgccaccg tggctaccac cgccatggct gccactggca
      361 tggctgccac cgccatggct gccaccgccg tgggttccgc ccatctggtt tccgctcatc
      421 tggcttccgc ccatctggtt tccacccatc gggctttcgc cggtgcggct ggcggcacgg
      481 ctcgcgctcg cctggcttcc gccacggttg ccgccgcccg aggcctcgcc gccccggcgg
      541 ccgatctcgg acatgtgttc gcggtcgcgg ctgaccgcct ggccgccctt ctgcgcgatc
      601 ttgcgctgct tttcgtcgtc catgctggcg aagccgcggc ccgggtggct gttgttgtcg
      661 gagcgattgg tgggcatggg ttctctccct ttcctgcgcg gcgcggagtg cgccgctttc
      721 cgtccagaca gaaacggtgc cgtggacgcg accgactcta gtcaggcgcc tgttatccca
      781 gcggcagtat cgggttaaag ccgatctcac ctgcttgaac ccgcaaccgc aaccgcgcgg
      841 cgcccttcgc ccaggggcgc gctccggatc agggaagcgg ctcgtcgtca tcgtgcaacc
      901 gcgagatcct gcgctgccag gtgcgtgccg tctgcggctt gacgaacagc gccaccacgt
      961 ccggatgcgc cgcgcgcacc gccgcctcga tccggttgac gcactgctcg atgtccggcg
     1021 tgcccagcgc gtcctcgaac tcggcgctca gcgccgcgac cacgctgtcc ggacccagct
     1081 gcacggtgaa tacgccattc gctcggcgga tcgccgcatc cgttccggcg atgcgcagga
     1141 tgtcgctgcg cacgcgcgga tgcgcggatt cgccgatcag caggcccttg gtttcgcgcg
     1201 cgagcagcag cgccgcgacg cacagcacga ggccgatgcc gatcgaggcc acgccgtcga
     1261 gcgtcggccg ctggaacagc tgcgagccgg cgacgccgac cgcggcgatc aggagcccca
     1321 gcagcgccgc gctgtcctcg aacagcacgg tgaaggtgct cgggtccttg ctggcgcgga
     1381 aggcctcgaa ccagccgcgc gtccctttcg ccttgcggaa gctgcgcatc gcgacccacc
     1441 acgaaccgcc ttcgaacacg cccgacaacg ccagcaccgc gtagttgatc agcggtcgct
     1501 gcatcggttc cgggtggcga aggtgggtga tcccttcgta gatcgagagt
//
LOCUS       DATIQC010000144         2261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_610351, whole genome shotgun sequence.
ACCESSION   DATIQC010000144 DATIQC010000000
VERSION     DATIQC010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610351"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..632
                     /locus_tag="VLM17_03045"
     CDS             30..632
                     /locus_tag="VLM17_03045"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HSR64567.1"
                     /translation="MSLPPCRRRAAIAGLFAGPWFAVALLVFAARVPEYRHALHPPAL
                     LGATGMPDALAWNLLGFVVPGLLAAVALQALHGALRAARANFVARIGATVLLLSALAF
                     VAQGLLPLRLGQALDAGPARMHVVAWMLWWLAALAGFALLAAGLRRQRLLAGGAVLAA
                     IAMAIALHAIFVPLPGGVRELLARVAWFAWIACAGLARQP"
     gene            complement(623..874)
                     /locus_tag="VLM17_03050"
     CDS             complement(623..874)
                     /locus_tag="VLM17_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET transporter"
                     /protein_id="HSR64568.1"
                     /translation="MTTDWIGYVAATLTTASFVPQAVRTVRTRDTRGISLWMYLLFTA
                     GVACWLAYGIALDAWPIVVANAVTCALALVILLMKLRYG"
     gene            complement(1010..>2261)
                     /locus_tag="VLM17_03055"
     CDS             complement(1010..>2261)
                     /locus_tag="VLM17_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR64569.1"
                     /translation="TDAAAPAPAPTVLHCGHLFDAASGRLLGETSILVRGERIAEVHA
                     GRMDAPAGAKTVELGQATCLPGLVDSHVHLTDQFGPTTYSDQFRLNPADYAIRGTVYA
                     KRTLLAGFTTVRNVGDNHNESIALRNAIRSGLIDGPRILSAGMAIGSTGGHADGSDGY
                     RADLMGDPGPAQSIVNGPQDAWKAIRQHYKDGVDLIKIMPSGGVLDESSSVDNAQLTE
                     EELRALVTAAKDYGFPVAAHAHGAEAIRRAVLAGVDSIEHGTFMDAKDMQLMKQHGTW
                     YVPTIIAGDFVGRQAKIPGVYPAQVAAKALQVAPQIMKTAGDAYRAGVPIAFGTDAGV
                     FPHGENAHEFELMVQAGMPPAFALQAATTHAAKLLRMDKDIGTVEAGKYADIVAVPGD
                     PLADIGLMKQVAFVMKGGQVVKQP"
BASE COUNT          251 a          797 c          846 g          367 t
ORIGIN      
        1 tgcctcgcca gcgtcgctac gatggcgcga tgtccctgcc tccttgccgc cgccgggccg
       61 cgatcgccgg cctgttcgcc ggcccctggt tcgccgtcgc gctgctggtg ttcgccgcgc
      121 gcgtgccgga ataccgccat gcgctgcatc cgcccgcgct gctcggcgca accgggatgc
      181 cggatgcgct ggcctggaac ctgctcggct tcgtcgtccc ggggctgctg gcggcggtcg
      241 cgctgcaggc gctgcatggc gcgttgcgtg ccgcacgcgc gaacttcgtc gcgcgcatcg
      301 gggcgaccgt gctgctgctg tccgcgctgg ccttcgtcgc gcagggactg ctgccgctgc
      361 ggctcgggca ggcgctggac gcgggtccgg cgcggatgca cgtggtggcc tggatgctgt
      421 ggtggctcgc cgcgctggcc ggcttcgcgt tgcttgccgc gggcctgcgc cgccagcgcc
      481 tgctcgcggg gggcgccgta ctggcggcga tcgcgatggc gatcgccctg cacgcgatct
      541 tcgtccccct gcccggtggc gtgcgcgagc tgctcgcgcg ggtggcgtgg ttcgcctgga
      601 tcgcctgcgc gggcctggcg cgtcagccgt agcgcagttt catcagcagg atcaccagcg
      661 cgagcgcgca ggtgaccgca ttggcgacga cgatcggcca cgcgtccagc gcgatcccgt
      721 aggcgagcca gcaggcgacg ccggcggtga acagcaggta catccacagc gagatgccgc
      781 gggtgtcgcg cgtgcgcacg gtgcgcaccg cctgaggcac gaacgacgcg gtggtcagcg
      841 tggccgccac gtagccgatc cagtcggtgg tcatggccgc gccgtgcccg ccggcgcgat
      901 gcccgcgccg gactcctggc cggtggtcgg catcaggccg ccgcagcgcg gcagcgggcc
      961 cggccagcgc aggcggcccg ttgcagccgg cagccggcgt gcgccggctt catggctgct
     1021 tgaccacctg gccacccttc atcacgaacg cgacctgctt catcaggccg atgtcggcga
     1081 gcggatcgcc cggcaccgcg acgatgtcgg cgtacttgcc cgcctcgacg gtgccgatgt
     1141 ccttgtccat gcgcagcagc ttcgccgcgt gggtggtcgc cgcctgcagg gcgaacgccg
     1201 gcggcatgcc ggcctgcacc atcagttcga actcgtgcgc gttctcgccg tgcgggaaca
     1261 cgccggcgtc ggtgccgaag gcgatcggta cgccggcgcg gtaggcatcg ccggccgtct
     1321 tcatgatctg cggcgcgacc tgcagcgcct tcgccgcgac ctgcgccgga taaacgcccg
     1381 ggatcttcgc ctgcctgccg acgaagtcgc cggcgatgat cgtcggcacg taccaggtgc
     1441 cgtgctgctt catcagctgc atgtccttcg cgtccatgaa ggtgccgtgc tcgatcgagt
     1501 ccacgccggc cagcaccgcg cggcggatcg cctcggcgcc gtgcgcgtgc gcggcgaccg
     1561 ggaagccgta gtccttcgcc gcggtgacca gcgcgcgcag ctcctcctcg gtgagctgcg
     1621 cgttgtccac gctgctgctc tcgtcgagca cgccgccgga gggcatgatc ttgatcaggt
     1681 ccacgccgtc cttgtagtgc tggcggatcg ccttccacgc atcctgcggc ccgttgacga
     1741 tcgactgggc cgggccgggg tcgcccatca ggtcggcgcg gtagccgtcg ctgccgtcgg
     1801 cgtggccgcc ggtcgagccg atcgccatgc ccgcgctgag gatgcgcggg ccgtcgatca
     1861 gccccgagcg gatcgcgttg cgcagcgcga tcgattcgtt gtggttgtcg ccgacgttgc
     1921 gcacggtggt gaagccggcg agcagggtgc gcttggcgta gacggtgccg cggatcgcgt
     1981 agtcggcggg attgaggcgg aactggtcgg agtaggtggt cgggccgaac tggtcggtga
     2041 ggtgcacgtg gctgtcgacc aggcccggca ggcacgtggc ctggccgagc tcgacggtct
     2101 tcgcgccggc cggcgcgtcc atgcggccgg catggacttc cgcgatgcgc tcgccgcgca
     2161 ccaggatgct ggtttcgccg agcaggcgac cgctggcggc atcgaacagg tgcccgcagt
     2221 gcagcacggt gggcgctggc gcgggcgcag cggcatcggt g
//
LOCUS       DATIQC010000145         1696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_44900, whole genome shotgun sequence.
ACCESSION   DATIQC010000145 DATIQC010000000
VERSION     DATIQC010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44900"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VLM17_03060"
     CDS             complement(<1..279)
                     /locus_tag="VLM17_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019305198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA family protein"
                     /protein_id="HSR64570.1"
                     /translation="MVAFDASEDLTPFQEARGKGYGAILFDAERGRQVEAEWFSPAFW
                     GDRARPVAGSGRGGAWFVESPAGPLVLRHYLRGGWAASVSRDGYIWHGL"
     gene            316..1380
                     /locus_tag="VLM17_03065"
     CDS             316..1380
                     /locus_tag="VLM17_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HSR64571.1"
                     /translation="MAPLPAPPRAICLLRLSALGDVTHVVPLVRTLRRAWPEVALTWL
                     IGKGEHRLLEGLPGVTFLEYDKRSGLAGMRALRAQLPVRRFDALLQMQVALRANLLSA
                     FVPAARRIGYDRARSKDLHGLFVNERIPDRPGIHVLDAIGSFCEPLGLRQADVAWDLP
                     VPDDARAWARAQWSDDRPVLLVSPCSSHVLRNWRAERYAALADHAAERGWQVVLCGGR
                     SQLERDTTDAILAAMSAPALDLVGKDTLKQLPALLERATLVVTPDSGPMHIANAMGTK
                     VLGLHAASNPARSGPYSDRRYCVDRYDDAARRFLGRPAAALAWGTKIERAGVMDLVTV
                     DDAIAAFERFLADHPRVAHR"
     gene            1377..>1696
                     /locus_tag="VLM17_03070"
     CDS             1377..>1696
                     /locus_tag="VLM17_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007082623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HSR64572.1"
                     /translation="MRLWTLHPHHLDARGLVALWREGLLARAVLCGQTKGYTRHPQLE
                     RFRLHATPLQAIDTYLAIVCDEADARGYRFDRSKLAPAPRGLRLPASDGQLAYEWGHL
                     LAKL"
BASE COUNT          235 a          652 c          577 g          232 t
ORIGIN      
        1 gagaccgtgc cagatgtagc catcgcggct cacgctcgcg gcccagccgc cgcgcaggta
       61 atgccgcagc acgagcgggc cggccggcga ttcgacgaac cacgcgccgc cgcggcccga
      121 gccagcgacc gggcgcgcgc gatcgcccca gaaggcgggg gaaaaccatt cggcctcgac
      181 ttgccgtccg cgttcggcgt cgaacagaat cgcgccatac cccttcccgc gcgcttcctg
      241 gaacggcgtc aggtcctcgc tggcgtcgaa ggcgaccatt cctgcgagtc tagcaagacc
      301 tttcgagcga ccgccttggc cccactcccc gccccgccgc gcgcgatctg cctgctgcgc
      361 ctgtccgcgc tcggcgacgt gacccatgtc gtccccctcg tgcgcaccct gcgccgcgcc
      421 tggccggagg tcgcgctcac ctggctgatc ggcaagggcg agcatcgcct gctcgaaggc
      481 ctcccgggcg tcaccttcct cgagtacgac aagcgcagcg gactggccgg catgcgcgca
      541 ctgcgcgcgc aactgcccgt gcgccgtttc gatgccttgc tgcagatgca ggtcgccctg
      601 cgcgcaaacc tgctctcggc cttcgtgccg gcggcgcgcc gcatcggcta cgaccgcgcg
      661 cgttcgaagg acctgcacgg gctgttcgtc aacgagcgca tccccgaccg gcccggcatc
      721 cacgtgctgg acgccatcgg cagcttctgc gagccgctgg gcctgcgcca ggcggacgtc
      781 gcgtgggacc tgccggtgcc cgacgacgcg cgcgcatggg cgcgcgcgca gtggagcgac
      841 gacaggccgg tgctgctggt ctcgccctgt tccagccacg tgctgcgcaa ctggcgcgcc
      901 gagcgctacg ccgcgctggc cgaccacgcc gccgagcgcg gctggcaggt ggtgctgtgc
      961 ggcggccgca gccagctcga gcgtgacacc accgatgcca tcctcgcggc gatgtccgcg
     1021 ccggcactgg acctggtcgg caaggacacc ctcaagcagc tgcccgcatt gctcgaacgc
     1081 gcgacgctgg tggtcacccc tgactcgggg ccgatgcaca tcgccaatgc gatggggacg
     1141 aaggtcctcg gcctgcacgc ggcgagcaat cccgcgcgca gcgggcccta ctccgaccgg
     1201 cgctactgcg tggaccgcta cgacgatgcg gcgcggcgct tcctcggcag gccggccgcc
     1261 gcgctcgcat ggggcacgaa gatcgaacgc gcgggcgtca tggacctggt gacggtcgac
     1321 gacgcgatcg ccgcgttcga acgcttcctc gccgaccatc cccgggtcgc gcaccggtga
     1381 ggctgtggac gctgcacccg caccacctcg atgccagggg cctggtggcg ctctggcgcg
     1441 aaggcctgct ggcgcgcgcg gtgctgtgcg ggcagacgaa gggctacacg cgccatcccc
     1501 agctggagcg cttccgcctg catgcgacgc cgctgcaggc gatcgacacc tacctcgcca
     1561 tcgtctgcga cgaggccgac gcgcgcggct accggttcga tcgcagcaag ctcgccccgg
     1621 caccgcgcgg cctgcgcctg ccggccagcg acggccaact cgcgtacgag tggggccacc
     1681 tgctcgccaa gctgga
//
LOCUS       DATIQC010000146        13387 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_221491, whole genome shotgun sequence.
ACCESSION   DATIQC010000146 DATIQC010000000
VERSION     DATIQC010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 13387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13387
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221491"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..840
                     /locus_tag="VLM17_03075"
     CDS             <1..840
                     /locus_tag="VLM17_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003468520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR64573.1"
                     /translation="QTHPVTTSRISESRERARQLAAQPKGFAFASTSGPDNPLLPGSL
                     RIDTSPGGDSGQFPWARERLRVLSADTPDAAVREYERMRRTKPLNDPQRYGLALASLQ
                     DGRYATAMDQLAPLLAAHPGDVWLELAMGQAEARAGRTAAADARFEALVARMPGNAAV
                     ALSYAGVLDERNTPAAGRRAQAVLRPLLGTSSASDPLFQQTFARASEISGDTARAGEA
                     WAEAAYLNGRPEQALVQLDTLKKRADLDYYARARIDARIAAITPVVLELQREGIRDED
                     LKR"
     gene            956..1660
                     /gene="phoB"
                     /locus_tag="VLM17_03080"
     CDS             956..1660
                     /gene="phoB"
                     /locus_tag="VLM17_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HSR64574.1"
                     /translation="MQKRILIVEDEPAIRDMVAFALRKDDYEPIPAGDGREAQAAIAD
                     RVPDLILLDWMLPGGSSGLELARRWRREALTRDIPIIMLTARGEENDRVGGLEAGVDD
                     YVVKPFSARELLARIRAVLRRAREDDADGSVRVGALRIDGAAHRVFAEVGGSEEPVTI
                     GPTEYRLLHFFMTHAERVYTRTQLLDHVWGGSVYVEERTVDVHIRRLRKALEPSGLDA
                     MVQTVRGAGYRFSTAT"
     gene            1731..3041
                     /gene="phoR"
                     /locus_tag="VLM17_03085"
     CDS             1731..3041
                     /gene="phoR"
                     /locus_tag="VLM17_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017917390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HSR64575.1"
                     /translation="MSLRAARSTTLLRLGLVLAVALAAGLLAGQPWAALAIAAVALLG
                     LDAWHLQRLVARLQSRRRVVPAGSGLWGELDRQLDRGQREMRARKQRLLGMLRAYRAA
                     AAALPDAVVVLARDHQRILWFNQAATGLLGLRYPDDIDAPLGERLQPLPLAHWLAAGR
                     KAEPLLDVASPIDADVRLNLRLIPYSDELWLLVARDVTKLMRLEHMRRDFVANVSHEL
                     RTPLTVIHGYLEMLDPAEQPEWAPMLGEMRRQSERMRQLVEDLLTLSRLEAQGGVVDE
                     EVPMAAMLATLGREAQALSQQRHQITVSDDAGVDLLGSPRELHSAFSNLVSNAVRYTP
                     AGGRIRIRFAREGDGAVLAVEDSGVGIPSSHLPRLTERFYRVSTSRSRESGGTGLGLA
                     IVKHVLGLHQARLEIHSEVGRGSGFACHFGADRVRPREAAGSPA"
     gene            3068..5164
                     /gene="ppk1"
                     /locus_tag="VLM17_03090"
                     /pseudo
     CDS             3068..5164
                     /gene="ppk1"
                     /locus_tag="VLM17_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535717.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
     gene            5157..6704
                     /gene="ppx"
                     /locus_tag="VLM17_03095"
     CDS             5157..6704
                     /gene="ppx"
                     /locus_tag="VLM17_03095"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004309 - exopolyphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006798 - polyphosphate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HSR64576.1"
                     /translation="MNETLHTHLRLRSQALPLQDGDLLAAVDLGSNSFHMVVARYVLG
                     QLRTVDRLRETVRLAEGLDASGGLRADVRQRALECLARFGQRLRDIPPQRVRAIATNT
                     VRQLATPQAFLLPAETALGHPIEVVSGREEARLIYLGVAHAQPPKPGQLRLVLDIGGG
                     STECIIGTGFDALERESLQAGCVASTRRFFGDGRLSRRRWNEALAEVSAEFQQFAGVY
                     RGLGWDEALGASGTNKAIGEICAALKLTKGAVTAEALPEVRDRLLRADTIDDIDLPSL
                     SEDRKPIIAGGVLVLEAAFDALGLTRMAVSKAALREGVLHDMLGRGSDADPRDASVRA
                     LMQRYGIDVAQAERVEATALQLFERVALAWQFDVDDRLRLAWAARLHELGLAIAHSQY
                     QVHGAYVLEHSDIAGFSQPEQRFLAALVRTHRRRIPKSAFDALPDRLQPGARHTAALL
                     RLAVLFHRSHEPDELPPLRLGAHADRLVLALPKAWLDARPLLRTDLETELHDLPALGV
                     KLVLEAA"
     gene            6743..7603
                     /gene="rlmJ"
                     /locus_tag="VLM17_03100"
     CDS             6743..7603
                     /gene="rlmJ"
                     /locus_tag="VLM17_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HSR64577.1"
                     /translation="MNYRHAFHAGNHGDVLKHVVLLALCEALLRKPGACFALDTHAGR
                     GLYALDAEAAQRTGEAAGGVQRLLDAPPDDPWIASWLDAVRACRARHGDSAYPGSPWL
                     LAHALRAQDRIACCELQPDEAAALKTAFADDPRVAVHRRDGYAALGALLPPVVQGTRY
                     ARGLVLIDPPFEAQLAEFDTALAALREGVARWPQATYALWYPLKQRRALQPFYRAAAA
                     LPAKSVLLAELLVRPDDSPLRMNGSGMLLLNPPFRFDDGLGRCLPLLATALAADGAPP
                     PRLEWLRAAA"
     gene            complement(7604..8521)
                     /locus_tag="VLM17_03105"
     CDS             complement(7604..8521)
                     /locus_tag="VLM17_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HSR64578.1"
                     /translation="MAGNGDSTRAVLFALGANLAIAVAKGVAAFFTGSSAMLAETVHS
                     LADCGNQLLLLLGMRQAKQPASPDYPLGYGKAIYFWSFLVAVMLFTVGGMFSLYEGMH
                     KLQQPEPLRQWWWAAGVLVFGIVAEGISMRACLQEVAKARGGRSLWRWFRDSRQSELV
                     VIFGEDFAALLGLAFALVAVLLSVATGNPAWDAAGSLAIGALLVVVAVLVAVEVKAML
                     IGQSVEPAREAELRRFLDARPEVARIISLITLQLGNEVMVSVQAHMHERGSADALVAQ
                     INGVERAMKEAFPEVRWSFFEPDTRDSRD"
     gene            8677..9228
                     /locus_tag="VLM17_03110"
     CDS             8677..9228
                     /locus_tag="VLM17_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64579.1"
                     /translation="MAARNRLPPWHEHQRLPNGRDVLIRPIRPDDAVPLRAAFPLLEP
                     DEIRHRFLHSLSELSPELAERLTHPNPRNEFAIVVAEPLPPGEALVGAVARAAVTPGR
                     REAEFAILVSRFIANMGLGRHLMRRLVRWARGKELDRLYGDVLEHNQPMLQLADSMGF
                     RREHGDAPGLVRVVLDLRPAQAA"
     gene            complement(9294..9956)
                     /locus_tag="VLM17_03115"
     CDS             complement(9294..9956)
                     /locus_tag="VLM17_03115"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR64580.1"
                     /translation="MFSRLPPVTKALLIANGVVFLLQLVLGDARFLPFMLWPPAGGDA
                     PFGAAPGFMPWQLVTYAFLHGSFAHVAFNMLALAMFGAPLEYTWGERRYAAYYFVCVI
                     GAGLFQLAVGYWTAVQGGDLYPTVGASGGIFGLLLAYGLLFPNQRVMLLIPPIPMKAR
                     TLVIVYGAIELLLGATGLQPGVAHFAHLGGMLFGWLLIQYWRGKPPFGRRGPPRRPRI
                     VR"
     gene            complement(10031..10378)
                     /locus_tag="VLM17_03120"
     CDS             complement(10031..10378)
                     /locus_tag="VLM17_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HSR64581.1"
                     /translation="MKGRAPQESSAEERILAAVRAIPRGQVAGYGEVARRAGLPGRAR
                     LAARVLSGNTDPRLPWHRVLRSDGRIAFPPGSEGFREQARRLQAEGIQVANGRVRMAR
                     QAPDLDAALWGMR"
     gene            10418..10828
                     /locus_tag="VLM17_03125"
     CDS             10418..10828
                     /locus_tag="VLM17_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64582.1"
                     /translation="MQNFEQIRSHLAASGFHVTMQEPYVVCVELSLENGSRHQAIFLS
                     ELQDDDQRCYLRASTVVAPTTGIDCRRALAFNWESRVGYLAIGDLDGVPYLQLCENRP
                     YTGLTGAEVDRVILEIGGMGDRMERALSAGGDLL"
     gene            complement(10893..12011)
                     /locus_tag="VLM17_03130"
     CDS             complement(10893..12011)
                     /locus_tag="VLM17_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005914989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HSR64583.1"
                     /translation="MLTLVLVVVLAALAFEFINGFHDTANSIATVVATKVLSPGQAVI
                     LAAGTNLIGAFWGTAVAKTIASGLIDTHVVDVTSQVILCALAGGITWNLITWWLGLPA
                     SSSHALVGGLCGAALAAAHNNWHALIWSQAAAKWTESKGLLWKVLLPMVTSPIAGFLL
                     GLLILSLLYAIIFALSRAGGALSRAARPRWVNAFFGKAQLVSAAYMGFAHGTNDAQKT
                     MGVIALTLFGAQASGALDDLPGWLSFLHPSGGEQDIAGWIITTCALVMAAGTAAGGWR
                     IIKTLGHKMVKLHPIDGFAAESASATILVTAAHFGMPVSTTHSISTAIMGVGFAKNPR
                     ALKLTVIERIVWAWILTIPAAGGIAYLFLKLFELMGWT"
     gene            complement(12022..12648)
                     /locus_tag="VLM17_03135"
     CDS             complement(12022..12648)
                     /locus_tag="VLM17_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005992439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pit accessory protein"
                     /protein_id="HSR64584.1"
                     /translation="MFSLQTIFGQGKQFFALLDEAADAAHDSTRALHEMLRAPQNTPS
                     LDAFKLARQRERAASDKISQALVDSFITPMEREDIEALASALYKIPKQVERFADRYAL
                     ARHRLEGIDFAPRAAMLEKAAAVVVEMVHALRAMQLEQMKQLNDRLRVIETEADRLIL
                     ELHREIYSGRLDAAEMFLLKEFFEILEKAIDRCREAGVVAYEIVLKNS"
     gene            12869..>13387
                     /locus_tag="VLM17_03140"
     CDS             12869..>13387
                     /locus_tag="VLM17_03140"
                     /inference="COORDINATES: protein motif:HMM:NF013741.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM domain-containing protein"
                     /protein_id="HSR64585.1"
                     /translation="MLELLIVLVLVLFNAFFALSEMAVMTSRKIRLKHMAETSRGARK
                     ALQLAEHPESFLSAVQLWITLLSLLVGYFGGESMGARIAEPLADIPVLAPYAGRLGFV
                     AGFLVMLFFFGLIGELVPKRIGTLRPEVIAAAVALPMHFFATIAKPVVIALSACTRFS
                     MRLLGLGSTTEAA"
BASE COUNT         1941 a         4921 c         4628 g         1897 t
ORIGIN      
        1 cagacgcacc cggtcaccac cagccgcatc agcgagtcgc gcgaacgcgc gcgccagctc
       61 gcggcgcagc ccaagggctt cgccttcgcc tcgaccagcg gtccggacaa tccgctgctg
      121 cccggctcgt tgcgcatcga caccagtccc ggcggcgaca gcggccagtt cccgtgggcg
      181 cgcgaacgcc tgcgcgtgct gagcgcggac acgccggacg cggcggtgcg cgaatacgaa
      241 cgcatgcggc ggacgaaacc gctgaacgat ccgcaacgct acggccttgc gctcgcgtcc
      301 ctgcaggacg gccggtacgc caccgccatg gaccagctcg ccccgctgct cgccgcgcat
      361 ccgggcgacg tctggctgga gctggcgatg ggccaggccg aagcgcgcgc cggcaggacc
      421 gccgccgcgg acgcccgctt cgaggcgctg gttgcccgca tgcccgggaa tgccgcggtg
      481 gcgctcagct atgccggcgt cctcgacgaa cgcaatacgc ccgccgccgg acgccgcgcg
      541 caggcggtgc tgcgtccgct gctgggcacc tcctcggcgt ccgacccgct gttccagcag
      601 accttcgccc gcgccagcga gatttccggc gataccgcca gggccggtga agcctgggcc
      661 gaggccgcct acctcaacgg ccgcccggag caggcgctgg tccagctcga tacgctgaag
      721 aagcgcgccg acctcgacta ctacgcccgc gcccgcatcg acgcacggat cgccgcgatc
      781 acgccggtgg tgctggaact gcagcgcgaa gggatccggg acgaggacct gaagcgctag
      841 cgtcggctgg gggcaccggc tccgcccgcc ggcgagcgac gccgggccac gtcatccgcc
      901 ggtcacaaat ccgtcgtcta atgcgccaca ggcccccgac gcgtcactcc agccggtgca
      961 gaaacgcatc ctgatcgtcg aagacgaacc cgcgatccgc gacatggtcg ccttcgccct
     1021 gcgcaaggac gactacgagc cgattccggc cggcgacggc cgcgaagccc aggcggccat
     1081 cgccgaccgc gtgcccgacc tcatcctgct cgactggatg ctccccggcg gcagcagcgg
     1141 cctcgaactc gcccggcgct ggcggcgcga ggcgctcacc cgcgacatcc cgatcatcat
     1201 gctcaccgcg cgcggcgagg agaacgaccg tgtcggcggg ctcgaagcgg gcgtcgacga
     1261 ctacgtggtc aagccgttct ccgcccgcga gctgctggcg cgcatccgcg ccgtgctgcg
     1321 gcgggcgcgc gaggacgacg cggatggcag cgtacgggtc ggcgcgctgc gcatcgacgg
     1381 cgccgcgcac cgcgtgttcg ccgaggtcgg cggcagcgag gagcccgtga cgatcgggcc
     1441 gaccgaatac cgcctgctgc atttcttcat gacccatgcc gagcgcgtct acacccgcac
     1501 ccagctgctc gaccatgtgt gggggggcag cgtctacgtg gaggagcgca ccgtcgacgt
     1561 gcacatccgc cgcctgcgca aggcgctcga gcccagcggc ctggacgcga tggtgcagac
     1621 cgtgcgcggc gccggctacc gcttttcgac cgcgacctga tccgcgccga ccgcgtcgcg
     1681 ccggcggggg cccgtccgcc gcttccgccc tccgccgcta gactccccgc atgtccctgc
     1741 gcgccgcccg ctccaccacc ctgctccggc tcggcctcgt gctggccgtg gcgctcgccg
     1801 ctggcctgct cgccggccag ccgtgggccg cgctcgccat cgccgccgtt gcgctgcttg
     1861 ggctcgatgc atggcacctg cagcgactgg tggcccggct gcagtcgcga cgccgcgtcg
     1921 tgccggcggg aagcggcctg tggggcgaac tcgaccgcca gctcgatcgc ggccagcgcg
     1981 agatgcgcgc gcgcaagcag cgcctgctcg gcatgctgcg cgcctaccgc gccgccgccg
     2041 cagcgttgcc cgacgccgtg gtcgtgctgg cgcgcgacca ccagcgcatc ctctggttca
     2101 accaggcggc gaccggactg ctcggcctgc gctatccgga cgacatcgac gcgccgctcg
     2161 gcgagcgcct gcaaccgctg ccgctcgcgc actggctggc cgcggggcgc aaggccgaac
     2221 cgctgctcga cgtcgcctcg ccgatcgacg cggacgtgcg cctcaacctg cgcctgatcc
     2281 cctattccga cgaactctgg ctgctggtcg cccgcgacgt caccaagttg atgcggctgg
     2341 agcacatgcg ccgcgacttc gtcgccaacg tctcgcacga gctgcgcacg ccactgaccg
     2401 tcatccacgg ctacctcgag atgctcgatc ccgccgagca gccggaatgg gcgccgatgc
     2461 tgggcgagat gcgccggcag tccgagcgca tgcggcaact cgtggaggac ctgctcacgc
     2521 tttcgcggct ggaggcgcag ggcggggtcg tcgacgagga ggtgccgatg gcggccatgc
     2581 tcgccaccct cgggcgcgag gcccaggcgc tcagccagca gcggcaccag atcaccgtgt
     2641 cggacgacgc gggcgtcgat ctcctcggct cgccccgaga actgcacagc gcgttctcca
     2701 acctcgtcag caacgcggtg cgctataccc cggccggcgg ccgcatccgc atccgcttcg
     2761 cacgcgaggg cgacggcgcg gtcctggcgg tggaggacag cggcgtcggc atcccctcca
     2821 gccacctgcc gcgcctgacc gaacggttct accgcgtgtc caccagccgc tcgcgcgaga
     2881 gcggcggtac cggtctcggc ctggccatcg tcaagcacgt gctcggcctg caccaggcgc
     2941 gcctggaaat ccacagcgag gtcggtcgcg gcagcggctt cgcctgccac ttcggcgccg
     3001 accgcgtccg gccgcgcgaa gcggcgggga gtcccgcatg aaggcgcgcc acctgcgcgg
     3061 gcgcgcgatg gagccgtcgg cggagcccgc ggcgcccgat cccctgtgcg atccctcgct
     3121 ctacttcaac cgcgaactgt cccagctcga cttcaacttc cgcgtgctgt cgcaggcgca
     3181 ggacgcggcg atgccgctgc tggaacggct gcgctacctc tgcatctcct gcaccaacct
     3241 cgacgagttc ttcgagatcc gcgcggcgac cgtgcgccat gcgcaggaat tcaccctgcc
     3301 ggtggcggcc gacggcctcc cgccggcgac ggtgctcaag cgcatccacg agcgtgccgc
     3361 ggagctggtc gacgcccagt accactgctg gaacgcggtg ctgcgtcccg cgctcaacga
     3421 cgccggcgtg cggatcctgc cgcgcgacgg ctggagcgcc gcgcagtcgg cgtggttgcg
     3481 gcagtacttc cgcgacgaga tccagccggt gctctcgccg ctgggcttgg acccggcgca
     3541 cccgttcccg aagatcctca acaagtcgct caacatcgtc gtcgtgctcg agggccgcga
     3601 cgccttcggc cgcgccggcc acctcgcggt ggtgcgcgcg ccgcgctccc tgccacggat
     3661 catccagctg ccgcgcgaga tctccggcgg cgagcacgac ttcgtgttcc tctccgcggt
     3721 gctcggcgcc ttcgtcgagg acctcttccc cggcatgcag gtgcgcggcg cctaccagtt
     3781 ccgggtcacc cgcaattccg aactgatcgt cgacgaggac gaggtgcaga acctcgccct
     3841 cgcgctgcgc gacgagctgg cggggcgcgg gtacctgcgg gcgatgcggc tggagatcgc
     3901 gcaggactgc cccgacgaga tcgtacggct gctgctgtag aacttcgacc tcaccgacaa
     3961 cgccgtgtac cggatcaacg gaccggtcaa cctcaaccgg gtgatccagg tctacgacct
     4021 cgtgcagcgc ccggagctca agttcccgcc gttccagccg cgcctgctgg acggcagcga
     4081 ggcgatgttc gagcgcgtgg ccggcggcga cgtgctgctg caccacccgt acgacggctt
     4141 cgccccggtg gtcgagcttg tgcgccaggc ggcggaagac ccgcacgtgc tggcgatcaa
     4201 gcagaccctg taccgcacgg gccgcgaatc gcagatcgtc gaggccctgg tgcaggccgc
     4261 gcgcaacggc aaggacgtga ccgtggtggt cgagctgcgc gcgcgcttcg acgaggaagc
     4321 caacctcgct ttcgccgatc gcctgcagca ggccggcgtg caggtggtgt acggcgtggt
     4381 gggctacaag acccatgcca agctgctcct gatcgtgcgc cgcgagggac cgaagctgcg
     4441 ccgctacgtg cacctgtcca ccggcaacta ccacgccggc accgcgcgtg cctacaccga
     4501 cttcggcctg atcaccgcgc accccggcat cggcagcgac gtgcaccagg tgttccagca
     4561 gctctcgggc ctcgcgccgg cgatcgagct cgaatgcctg ctgcagtcgc cgttcaccct
     4621 gcacgagggc gtgctggcac gcatcgcccg cgaagcgcgc catgcgcgcg cgggcaagcc
     4681 ggcgcgcatc gtcgcgcgca tgaacgccct gaacgagccg gccgtggtgc gcgcgctgta
     4741 cgccgcctcc caggccggcg tggagatcga cctggtcgtc cgcggcgcgt gcacgctgcg
     4801 tcccggcgtc cccggcgtgt ccgacaacat ccgcgtgcgc tcggtggtcg gccgattcct
     4861 cgagcacagc cgcgtgtact ggttcggcaa cgacgacgcg cccgaactct attgcgccag
     4921 cgccgactgg ctggagcgca acctgctgcg gcggatcgag gtcgccttcc ccatcctcga
     4981 tcccgcgctc gcttcgcgcg tcaagaccga ggccctggac aactacctgg ccgacaattg
     5041 cgatgcgtgg gtgctgcatc cggatgggcg ctacgagcgg ctggcgccgg ccgccggcga
     5101 acggccgcac tcggcccagc gcgccctgct cgcgcgcctt tgcggaatcc gcgcgcatga
     5161 atgaaacgct gcatacccac ctgcgcctcc gctcccaggc gcttccgctg caggacgggg
     5221 acctgctggc cgcggtcgac ctcggctcca acagcttcca catggtggtc gctcgctacg
     5281 tgctcggcca gttgcgcacg gtcgaccgcc tgcgcgagac cgtgcgcctc gccgagggcc
     5341 tggacgccag cggcggcctg cgcgccgacg tgcgccagcg cgcgctcgaa tgcctggccc
     5401 gcttcggcca gcgcctgcgc gacatccccc cgcaacgggt gcgtgcgatc gcgacgaaca
     5461 ccgtgcgcca gctggctacg ccgcaagcct tcctgctgcc cgcggaaacc gcgctcggcc
     5521 atccgatcga agtggtgtcc ggccgcgagg aggcacgcct gatctacctg ggcgtggccc
     5581 acgcccagcc acccaagccc ggccagttgc ggctggtgct cgacatcggc ggtggctcga
     5641 ccgaatgcat catcggcacc ggcttcgacg cgctcgagcg cgagagcctg caggccggct
     5701 gcgtggccag cacgcggcgg ttcttcggcg acggtcggct gtcgcgcagg cgctggaacg
     5761 aggcgctcgc cgaagtcagc gcggaattcc agcagttcgc cggcgtctac cgcgggctcg
     5821 gctgggacga ggcgctgggc gcctccggca ccaacaaggc gatcggcgag atctgcgcgg
     5881 cgctgaagct gaccaagggc gcggttaccg ccgaagcact gccggaggtg cgcgatcgcc
     5941 tgctgcgcgc ggacaccatc gacgacatcg acctgccctc gctctccgag gaccgcaagc
     6001 cgatcatcgc cggtggcgtg ctggtgctcg aggcggcgtt cgacgcgctg ggcctcaccc
     6061 gcatggcggt gagcaaggcc gcgctgcgcg agggcgtgct gcacgacatg ctcgggcgcg
     6121 gcagcgatgc cgatccacgc gacgcctcgg tgcgtgcgct gatgcagcgc tacggcatcg
     6181 acgtggcgca ggcggagcgg gtggaagcca ccgcgctgca gctgttcgag cgggtcgcgc
     6241 tggcctggca attcgacgtc gacgaccgcc tgcgcctggc ctgggcggcg cgcctgcacg
     6301 aactcggcct cgccatcgcc cacagccagt accaggtgca cggcgcctat gtgctggagc
     6361 attccgacat cgccggcttt tcgcagccgg agcagcgttt cctcgccgcg ctggtgcgca
     6421 cgcaccggcg ccggatcccg aagtcggcct tcgacgccct gcccgaccgc ctccagcccg
     6481 gcgcgcgcca caccgccgcg ttgctgcggc tggccgtgct gttccaccgc tcgcacgagc
     6541 cggacgaact gccgccgctg cggctcggcg cccatgccga ccggctcgtg ctggcgttgc
     6601 caaaggcctg gctcgatgca cgcccgctgc tgcgcaccga cctcgaaacg gagctccacg
     6661 acctgcccgc gctcggcgtc aagctggtgc ttgaagccgc ctgaccggtg tggggtcggt
     6721 cgcggctgcg tacactgcgg cggtgaacta ccgccacgcc ttccacgccg gcaaccacgg
     6781 cgacgtgctc aagcacgtcg tgctgctggc gctgtgcgag gcactgctgc gcaagccggg
     6841 cgcgtgcttc gcgctcgata cccacgccgg gcgcgggctg tacgcgctcg acgctgaagc
     6901 cgcgcaacgc accggcgagg cggccggagg cgtgcagcgg ctgctggatg cgccgcccga
     6961 cgatccctgg atcgcgagct ggctcgacgc cgtgcgagcc tgccgggcgc gccacggcga
     7021 cagcgcctat cccggctccc cgtggctgct cgcgcacgcg ctgcgcgcgc aggaccggat
     7081 cgcgtgctgc gagctgcagc cggacgaggc cgcggcgctg aagacggcgt tcgccgacga
     7141 tccacgggtg gcggtgcacc ggcgcgacgg ctacgccgcg ctgggcgcgc tgctgccgcc
     7201 ggtcgtgcaa ggcacgcgct atgcgcgcgg actggtgctc atcgatccgc cgttcgaggc
     7261 gcaactggcg gagttcgaca ccgcgctcgc ggcactgcgc gagggcgtgg cgcgctggcc
     7321 acaggcgacc tatgcgctgt ggtacccgct caagcagcgg cgtgcgctgc agccgttcta
     7381 ccgggccgcc gccgcgctgc cggcgaaatc cgtgctgctc gccgaactgc tggtacgccc
     7441 ggacgactcg cccctgcgca tgaacggcag cgggatgctg ctgctcaatc cgccgttccg
     7501 cttcgacgac gggctggggc gctgcctgcc gctgctcgcc accgcgctgg cggcggacgg
     7561 cgcgccgccg ccacggctgg aatggctgcg cgccgccgcg tgactagtcg cggctatcgc
     7621 gcgtatccgg ctcgaagaag ctccagcgca cctcggggaa cgcctccttc atcgcccgtt
     7681 cgacgccgtt gatctgggcg accagggcat ccgcgctgcc gcgctcgtgc atgtgcgcct
     7741 gcaccgacac catcacttcg ttgcccagct gcagcgtgat caggctgatg atgcgcgcga
     7801 cctcggggcg cgcgtcgagg aagcggcgca gctccgcctc gcgcgccggc tcgacgctct
     7861 ggccgatcag catcgccttg acctcgaccg ccaccagcac ggccaccacc accagcaacg
     7921 cgccgatcgc caggctgccg gccgcgtccc aggccgggtt gcccgtggcg acgctgagca
     7981 gcaccgcgac cagcgcgaac gccaggccga gcagcgcggc gaagtcctcg ccgaagatca
     8041 ccacgagttc gctctgccgg ctgtcgcgga accagcgcca caggctgcgc ccgccgcgcg
     8101 ccttcgcgac ttcctgcagg caggcccgca tcgagatgcc ttcggcgacg atgccgaaca
     8161 ccagtacccc ggcggcccac caccattgcc gcagcggctc cggctgctgc agcttgtgca
     8221 tgccttcgta cagcgaaaac atgccgccga cggtgaacag catcaccgcg acgaggaacg
     8281 accagaagta gatcgccttg ccgtagccga gcggatagtc gggcgacgcc ggctgcttcg
     8341 cctggcgcat gccgagcagg agcagcagct ggttgccgca atcggccagg gaatgcacgg
     8401 tctcggcgag catcgcgctc gatccggtga agaacgcggc gacgcccttg gcgaccgcga
     8461 tcgcgaggtt ggcgccgagc gcgaaaagca ccgcgcgggt ggaatcgccg ttgcctgcca
     8521 tggggcccgt gtctcgttgc gtggggaccg gagagtgtag cggcgtgaag gcagggtccg
     8581 ttgccgcccc gccggagtgc gggccggcgc cgggccagga tcgggacacc ggtcgaacgt
     8641 ggctttcacc tgcctcgtgc cagcatcccg cgcactatgg ccgcccgcaa tcgtctcccg
     8701 ccctggcatg agcaccagcg tctccccaac gggcgcgacg tgctcatccg tcccatccgc
     8761 cccgacgacg cggtgccgct gcgcgcggcc ttcccgttgc tggaaccgga cgagatccgc
     8821 caccgcttcc tgcactcgct cagcgagctc tcgccggagc tggccgaacg gctgacccac
     8881 cccaatcccc gcaacgaatt cgcgatcgtg gtggccgagc cattgccgcc gggcgaggcg
     8941 ctggtcggcg cggtcgcgcg ggccgcggtg acgccgggcc ggcgcgaagc ggagttcgcg
     9001 atcctggtga gccgcttcat cgccaacatg gggctgggcc ggcacctgat gcgccggctg
     9061 gtgcgctggg cgcgcggcaa ggagctcgac cgcctctacg gcgacgtcct cgagcacaac
     9121 cagcccatgc tgcagctggc cgactcgatg ggcttccgcc gcgaacacgg cgacgcgccg
     9181 ggactggtgc gggtggtgct ggacctgcgg ccggcccagg cggcgtgacc tggagagccg
     9241 cgacggtggc gtgacgcgac ggtgccccgc cgtggcgcgc cgccgcttcc cgatcagcgc
     9301 acgatccgcg gccgccgcgg tggaccgcgc cgaccgaacg gcggcttccc gcgccagtac
     9361 tggatcagca gccagccgaa cagcatgccg cccagatggg cgaagtgcgc cacgcctggc
     9421 tgcaggcccg tggctccgag cagcagttcg atcgcgccgt acacgatcac cagcgtgcgc
     9481 gccttcatcg ggatgggcgg gatcagcagc atcacgcgct ggttcgggaa cagcaggccg
     9541 tacgcgagca gcaggccgaa gatgccgccg gacgcgccca ccgtcgggta gaggtcgccg
     9601 ccctgcaccg cggtccagta gccgaccgca agctggaaca gcccggcgcc gatgacgcag
     9661 acgaagtagt acgccgcata gcgccgctcg ccccacgtgt actccagcgg cgcgccgaac
     9721 atcgccagcg cgagcatgtt gaaggcgacg tgggcgaagc tgccgtgcag gaacgcgtag
     9781 gtgaccagct gccagggcat gaagcccggg gcggcgccga agggcgcgtc gccaccggcc
     9841 ggcggccaca gcatgaacgg caggaagcgc gcgtcgccga gcaccagctg gaggaggaac
     9901 accacgccgt tggcgatcag cagcgccttg gtgacggggg gcagtctgga gaacatgcgg
     9961 cggtcgctgc ggcaaaacgg tccgccatga taccggcagc gcggtcaatg cccctgcaac
    10021 gcagcgtgcc tcagcgcatg ccccagagcg cggcgtcgag gtcgggcgcc tgccgcgcca
    10081 tgcgcacccg accgttggcc acctggatgc cctccgcctg cagccgcctg gcctgttcgc
    10141 ggaaaccttc cgagccgggt ggaaaggcga tccggccatc cgaacgcagc acgcgatgcc
    10201 acggcagcct cgggtcggtg ttgccgctga ggacgcgcgc ggccaggcgg gcgcgtccgg
    10261 gcagcccggc gcggcgcgcg acctcgccgt aaccggcgac ctgtccgcgc gggatcgcgc
    10321 gcaccgcggc gaggatgcgt tcctcggcgg aagattcctg cggagccctg cccttcatcg
    10381 gggtagcata gcggctcccc cgagtcgcgc ctccgccatg cagaacttcg agcagatccg
    10441 cagccacctc gccgccagcg gcttccacgt caccatgcag gaaccctacg tggtgtgcgt
    10501 cgaactctcg ctcgaaaacg gcagccgcca ccaggcgatc ttcctgtcgg agctgcagga
    10561 cgacgaccag cgctgctacc tgcgcgccag caccgtggtg gcgccgacca ccggcatcga
    10621 ctgccggcgc gcgctcgcct tcaactggga gagccgcgtg ggttacctgg cgatcggcga
    10681 cctcgacggc gtgccttacc tgcagttgtg cgagaaccgt ccttacacgg gcctgacggg
    10741 ggccgaggtc gaccgcgtga tcctcgagat cggcggcatg ggcgaccgca tggagcgggc
    10801 gctgtcggcg ggcggcgacc tgctgtaggc gaccggcgcc ggaaaaaaaa gcccgccttg
    10861 cggcgggctt ttttcgtggg cggaagccgc gctcaggtcc agcccatcag ctcgaacagc
    10921 ttgaggaaga gataggcgat gccgccggcg gcggggatcg tcaggatcca cgcccacacg
    10981 atgcgctcga tcacggtgag cttgagcgcg cgcgggttct tggcgaagcc cacgcccatg
    11041 atcgcggtcg agatgctgtg ggtggtcgac accggcatgc cgaagtgggc ggcggtgacc
    11101 aggatcgtgg ccgaggcgct ctcggcggcg aaaccgtcga tcggatgcag cttcaccatc
    11161 ttgtggccca gcgtcttgat gatgcgccag ccgcccgcgg cggtgccggc ggccatcacc
    11221 agcgcgcagg tggtgatgat ccaccccgcg atgtcctgct cgccgccgga cggatgcagg
    11281 aacgacagcc acccgggcag gtcgtcgagg gcacccgacg cctgcgcgcc gaacagggtc
    11341 agcgcgatca cgcccatggt cttctgcgcg tcgttggtgc cgtgggcgaa gcccatgtag
    11401 gccgccgaga cgagctgcgc cttgccgaag aaggcgttca cccagcgtgg gcgcgccgcc
    11461 cgcgagagcg cgccgcccgc gcgcgacagg gcgaagatga tcgcgtacag cagcgacagg
    11521 atcagcaggc cgagcaggaa gccggcgatc ggcgaggtga ccatcggcag caggaccttc
    11581 cacagcaggc ccttgctctc cgtccacttc gccgcggcct gcgaccagat cagcgcgtgc
    11641 cagttgttgt gggcggccgc gagcgcggcg ccgcacaggc cgccgaccag cgcgtgcgag
    11701 gacgaggccg gcaggcccag ccaccaggtg atcaggttcc aggtgatgcc gccggcgagc
    11761 gcgcacagga tcacctggga ggtgacgtcg accacatggg tatcgatcag gcccgacgcg
    11821 atcgtcttcg ccaccgccgt gccccagaac gcgccgatca ggttggtgcc ggcggccagg
    11881 atcacggcct gccccggcga caggaccttg gtggcgacca ccgtggcgat cgagttggcg
    11941 gtgtcgtgga agccgttgat gaactcgaag gcgagcgcgg ccaggacgac caccagcacg
    12001 agggtcagca tggcggcggc ctcagctgtt cttcagcacg atttcgtagg cgaccacgcc
    12061 ggcctcgcgg cagcggtcga tcgccttctc gaggatctcg aagaactcct tgaggaggaa
    12121 catctccgcg gcgtcgagcc ggccggaata gatctcccgg tgcagttcga ggatcaggcg
    12181 gtcggcctcg gtctcgatca cgcgcaggcg gtcgttgagc tgcttcatct gctccagctg
    12241 catcgcgcgc agcgcgtgca ccatctcgac caccacggcc gctgccttct ccagcatcgc
    12301 cgcgcgcgga gcgaaatcga tgccctccag gcgatggcgc gccagcgcgt agcggtcggc
    12361 gaagcgctcg acctgcttgg ggatcttgta cagggccgag gccagcgcct cgatgtcctc
    12421 gcgctccatc ggggtgatga agctgtcgac cagcgcctgg ctgatcttgt ccgaggccgc
    12481 ccgctcgcgc tggcgggcca gcttgaaggc gtcgaggctg ggcgtgttct gcggcgcccg
    12541 gagcatctcg tgcagggcgc gggtgctgtc gtgcgcggca tcggccgcct cgtcaagcag
    12601 ggcgaagaac tgcttgccct ggccgaagat cgtctgcagg gagaacatcg cgggaggtcc
    12661 ttgttgcgga atggtggcaa ggatatgggc gctttgtgac gcttttgttg cacgccccgg
    12721 cgggaggccc gccctcccgt cattgctatg atgcgccgcc cccgccgagg cccgcgtggc
    12781 tcggccttca cgccccgcac acgccatccg cggcggtctc cgctccgccc gcgcccacca
    12841 tccgctggaa ccgacgtgtt cgaaccccgt gcttgaactc ctgatcgtcc tggtgctggt
    12901 cctgttcaac gccttcttcg ccctgtcgga gatggcggtg atgacctcgc gcaagatccg
    12961 gctcaagcac atggccgaga ccagccgggg cgcgcgcaag gcgctgcagc tggccgagca
    13021 cccggaaagc ttcctgtcgg cggtgcagct gtggatcacc ctgctcagcc tgctggtcgg
    13081 ctacttcggc ggcgagagca tgggtgcccg catcgccgaa ccgctcgccg acatccccgt
    13141 gctcgcgcct tacgccggcc ggctgggctt cgtcgccggc ttcctggtga tgctgttctt
    13201 cttcggcctg atcggcgagc tggtgccgaa gcggattggc accttgcggc ccgaagtcat
    13261 cgccgcggcc gtcgcgctgc cgatgcactt tttcgccacc atcgccaagc cggtggtgat
    13321 cgcgctgtcg gcatgcacgc gtttctcgat gcgactgctg ggattgggga gcacgaccga
    13381 agccgcg
//
LOCUS       DATIQC010000147         1734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_327601, whole genome shotgun sequence.
ACCESSION   DATIQC010000147 DATIQC010000000
VERSION     DATIQC010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327601"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..623
                     /locus_tag="VLM17_03145"
     CDS             <1..623
                     /locus_tag="VLM17_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008217262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HSR64586.1"
                     /translation="ARAAMALAIGDARRLQGLPPDLDQGRAPEPHGMIAAAMHAPSID
                     PAARWLRLLPPPARLAPLLRACPPALQRRLLERAMARVLGAPLQGGALAFLQGRRLGI
                     EATDLGLRWVVTLDDGRLRAIEDAAEASVRGTATDLLLLAGRLEDADTLFFQRRLELT
                     GDVELGLTARNLLDRLPWEDVPLGLRIALNRGARLARAARDAYHAA"
     gene            653..1708
                     /gene="nadA"
                     /locus_tag="VLM17_03150"
     CDS             653..1708
                     /gene="nadA"
                     /locus_tag="VLM17_03150"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008439402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HSR64587.1"
                     /translation="MNASVVPSWHPSLEARHAPLVEKLERLLPCMEVPLHLPWIDGIN
                     ALKKERGAAIMAHSYQSPEIFHGVADITGDSLALAQAAADCDSDLIVLCGVHFMAESA
                     KILAPGKTVLIPDLEAGCSLASSITAADVRALRALHPGAPVVSYVNTPAAVKAESDAC
                     CTSANAVQVVEAMRAASRADKVIFLPDRYLGAWVATQTDVELVLWHGQCEVHEKFTAM
                     EARHTRERFDAKIVAHPECPPEVLAEADFVGSTSAMGRWLEKERPQRVAMITECSMAD
                     NLRNQFPQVEFIKPCNLCPHMKRITLTGIRDALAGMRHEVHVDPRVAQAARQALERML
                     AVSPHAPRLSAPAEVAR"
BASE COUNT          236 a          667 c          598 g          233 t
ORIGIN      
        1 ccgcgcgcgc ggcgatggcg ctcgccatcg gcgacgcgcg ccgcctgcag ggcctgccgc
       61 ctgacctgga tcaaggccgg gcgccggagc cgcacggcat gatcgccgcc gccatgcatg
      121 ccccctccat cgaccccgca gcgcgctggc tgcgcctgct gccgccgccg gcgaggctgg
      181 cgccgctgtt gcgggcatgc ccgccggccc tgcaacgccg cctgctcgag cgtgcgatgg
      241 cgcgcgtgct cggcgcgccg ctgcagggcg gcgcgctggc cttcctgcag ggccgccgcc
      301 tcggcatcga ggccaccgac ctcggcctgc gctgggtggt gacgctcgac gacgggcggc
      361 tgcgcgcgat cgaggatgcc gccgaggcca gcgtgcgcgg caccgccacc gacctgctgc
      421 tgctcgccgg tcgcctggag gacgccgaca cgctgttctt ccagcgccgg ctcgaactca
      481 ccggcgacgt cgagctcggc ctcaccgccc gcaacctgct cgatcgcctg ccgtgggagg
      541 acgtcccgct cggcctgcgc atcgccctca accgcggcgc acggctggcc cgggccgccc
      601 gcgacgcgta ccacgcggcc tgatcgccgt tgcctccccg acgagaccgc gaatgaatgc
      661 atccgtcgtg ccgtcctggc acccgtccct cgaggcgcgc catgcgccgc tggtcgaaaa
      721 gctcgagcgc ctgctgccgt gcatggaggt gccgctgcac ctgccctgga tcgacgggat
      781 caacgcgctg aagaaggaac gcggcgcggc gatcatggcg cacagctacc agtcgccgga
      841 aatcttccac ggcgtcgccg acatcaccgg cgactcgctc gcgctcgcgc aggccgcggc
      901 cgactgcgac agcgacctga tcgtgctctg cggcgtccac ttcatggccg agagcgcgaa
      961 gatcctcgcg ccgggcaaga ccgtgctgat cccggacctc gaggccggct gctcgctcgc
     1021 gtcctcgatc accgccgccg acgtgcgcgc gctgcgcgcg ctgcacccgg gcgcgccggt
     1081 ggtgagctac gtcaacaccc cggccgcggt gaaggccgag tcggatgcct gctgcacctc
     1141 ggccaacgcc gtgcaggtgg tcgaggcgat gcgcgccgct tcgcgcgcgg acaaggtgat
     1201 cttcctgccc gaccgctacc tcggcgcatg ggtggccacc cagaccgacg tcgaactggt
     1261 gctctggcac ggccagtgcg aggtccacga gaagttcacc gcgatggagg cgcggcacac
     1321 gcgcgagcgc ttcgacgcga agatcgtcgc ccatcccgaa tgcccgccgg aggtgctcgc
     1381 cgaagcggac ttcgtcggtt cgaccagcgc gatgggccgc tggctggaga aggaaaggcc
     1441 gcagcgggtg gcgatgatca ccgagtgctc gatggccgac aacctgcgca accagttccc
     1501 gcaggtggag ttcatcaagc cctgcaacct gtgcccgcac atgaagcgga tcacgctcac
     1561 cggcatccgt gacgcgctgg ccgggatgcg ccacgaggtg cacgtcgacc cgcgcgtggc
     1621 gcaggccgct cggcaggccc tggagcgcat gctcgccgtg tcgccccacg cgccccgcct
     1681 ctcggcgccg gcggaggtcg cccgatgagc gccctcatct cgtccaccga cgtg
//
LOCUS       DATIQC010000148         1789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_363160, whole genome shotgun sequence.
ACCESSION   DATIQC010000148 DATIQC010000000
VERSION     DATIQC010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363160"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VLM17_03155"
     CDS             complement(<1..251)
                     /locus_tag="VLM17_03155"
                     /inference="COORDINATES: protein motif:HMM:NF018648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HSR64588.1"
                     /translation="MTTPAPAALRLPGRALRALAEFFRLEAAGGIVLILAAALALACA
                     NSPLAPWYASFRALPVSVAFGHWSLAKPALLWINDGLMAV"
     gene            complement(306..1259)
                     /locus_tag="VLM17_03160"
     CDS             complement(306..1259)
                     /locus_tag="VLM17_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004426326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:calcium antiporter"
                     /protein_id="HSR64589.1"
                     /translation="MAAALGFFLLGLFLLALGGDSIVRGASGLGRRLGLSPLATGVVL
                     VAFGTSLPELAVNARAAWVGSQALALGNAVGSNVVNFGLTLGAAALAMPLLVRWRALV
                     PLLLCFMLACVLVMLLGYDGALSRFDGGVLLAVFIAVLAWTLMRSPRETDEVQEAIEA
                     FCATNSVLWLNLFRFLLAVVLLYFGARLVVEHAPVLGAALGLAPLLTGLVVVAVGTAL
                     PEMAGAIAAARRGHGDMVVGHVVGSSLFNLLVVVGGMAVFRDVPLPTSFVRFEVPAAL
                     AFALALYPMLRGDLRISKREGGVLLAAFLAWLLFELVLVRH"
     gene            complement(1325..>1789)
                     /locus_tag="VLM17_03165"
     CDS             complement(1325..>1789)
                     /locus_tag="VLM17_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lectin"
                     /protein_id="HSR64590.1"
                     /translation="EGAAAETLAHWDGYGDLRFGMAPGAARQAWGGELAGDAPDLLAQ
                     CGYLHPARARPGTAIGFMFEKGRLVRYDVDTPKESAPGGGRIGMQRGRIEALYPGVEA
                     RAHHYVQGAWYLRVRDPREAGRALVFETDAQGRVTRWRVGVVPAVDYIEGCA"
BASE COUNT          298 a          680 c          632 g          179 t
ORIGIN      
        1 accgccatca gcccgtcgtt gatccagagc agcgccggct tggcgagcga ccagtgcccg
       61 aacgcgaccg acaccggcag cgcgcggaag gatgcgtacc acggtgcgag cggcgaattc
      121 gcgcacgcca gcgccagcgc ggcggcgagg atgagcacga tgccgccggc ggcttccagc
      181 cggaagaatt cggcgagggc gcgcagcgcg cgcccgggca ggcgcagcgc cgcgggggcg
      241 ggcgtcgtca tgcgcgcgag tctagcagcc gtgatcgcgc acccgtcgcg ttggcgcgcg
      301 acgcgttagt gccgcaccag caccagctcg aacagcagcc aggcgaggaa cgccgccagc
      361 agcacgccgc cttcgcgctt gctgatgcgc aggtcgccgc gcagcatcgg atacagcgcc
      421 agcgcgaagg cgagcgccgc cggcacttcg aagcgcacga acgacgtcgg cagcggcacg
      481 tcgcggaaca ccgccatgcc gccgaccacc accagcaggt tgaacaggct ggacccgacc
      541 acgtggccga ccaccatgtc gccatggccg cgccgcgcgg cggcgatcgc gccggccatc
      601 tccggcagcg cggtgccgac cgcgaccacc accaggccgg tcagcagcgg cgccaggccg
      661 agcgcggcgc ccagcaccgg cgcgtgttcg accaccagcc gcgcgccgaa gtacagcagc
      721 acgaccgcca gcaggaagcg gaacaggttc aaccagagca ccgaattggt cgcgcagaag
      781 gcttcgatcg cctcctgcac ctcgtccgtc tcgcgggggc tgcgcatcag cgtccacgcc
      841 agcaccgcga tgaacaccgc cagcagcacc ccgccatcga agcggctgag cgcgccgtcg
      901 tagccgagca gcatcaccag cacgcaggcc agcatgaagc acagcagcag cggcaccagc
      961 gcgcgccagc gcaccagcag cggcatcgcc agggcggcgg caccgagggt caggccgaag
     1021 ttgacgacgt tgctgccgac cgcgttgccg agcgccagcg cctggctgcc gacccacgcg
     1081 gcgcgcgcgt tgaccgcgag ttcgggcagc gacgtgccga aggcgaccag caccacgccg
     1141 gtggcgagcg gcgacaaccc gagccgccgg ccgaggccgg acgcgcccct gacgatggaa
     1201 tcgccgccga gcgcgagcag gaacaggccg aggaggaaga agccgagcgc agctgccatg
     1261 tcgcgtctcc agcaggggtc cgggcgattc tacgcagggc cgcgcggggg cgcgtcgagg
     1321 cgcgctaggc gcagccttcg atgtaatcca ccgccggaac gacaccgacc cgccagcggg
     1381 tgacccgtcc ctgcgcgtcg gtctcgaaca ccagcgcgcg gcccgcctcg cgcggatcgc
     1441 gcacgcgcag gtaccaggca ccctgcacgt agtggtgcgc gcgcgcctcg acgcccgggt
     1501 acagggcctc gatgcgcccg cgctgcatgc cgatgcggcc gccgccgggc gcgctttcct
     1561 tcggcgtgtc cacgtcgtag cgcacgaggc gtcccttctc gaacatgaag ccgatcgcgg
     1621 tgcccggccg tgcccgggcc gggtggagat atccgcactg cgccagcagg tcgggcgcgt
     1681 cgccggcgag ttcgccgccc catgcctggc gcgcggcgcc gggcgccatg ccgaagcgca
     1741 ggtcgccata gccgtcccag tgcgccagcg tctccgcggc cgcaccttc
//
LOCUS       DATIQC010000149         2638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_681110, whole genome shotgun sequence.
ACCESSION   DATIQC010000149 DATIQC010000000
VERSION     DATIQC010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_681110"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..612
                     /locus_tag="VLM17_03170"
     CDS             13..612
                     /locus_tag="VLM17_03170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007806203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR64591.1"
                     /translation="MLRTPQPAPAPAPAAPAEAAAPQERRAAARVTAREGLRVLVIDD
                     STTIIAVLGKMLRQNGYEVTGAGDAEAGIVAARTLKPDLIYLDIVLPGMNGFDALRAL
                     RREDATRDTPIIMISGNVQATEQFYVKRIGADDFMKKPFGRGEVFMRIQDLVEAGRLP
                     ARAAPPPELLADDGSIAPADASDPAGRETAGASVADSGR"
     gene            730..1938
                     /locus_tag="VLM17_03175"
     CDS             730..1938
                     /locus_tag="VLM17_03175"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR64592.1"
                     /translation="MDLNSGYPFWAISNGLLRAFPPLAADARCDVAVVGGGISGALIA
                     DELVAHGHEVVVLDRRDIGWGSTAASTALLQYEIDVPMVDLARRLGEDAATAAYRACA
                     EAIGLLQDKAGEVGDTGFRRMDSLYYASRGRHAARLRAEQAMRHRHGLQCEWLGAGAV
                     RERYGFEAPAALLSRPAATVDPYRMTYRLLERARQRGARVHDRTTVAAIAPGARGVVL
                     RTAAGPRITARQVVLAAGYETQAWLPRKVARNRSTYAFVTDPLEPTLLGPLRRTIAWE
                     TARPYLYLRSTRDGRVMAGGEDDAIDIPQRRDARVGRKARRLAGKVAALFPRLPLQPV
                     FAWAGTFAETDDGLPFFGPHPRYGPRVQFAMAYGGNGIVFSMLGAGLLRARIERRRHP
                     LAALFGFDRR"
     gene            complement(1942..>2638)
                     /locus_tag="VLM17_03180"
     CDS             complement(1942..>2638)
                     /locus_tag="VLM17_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR64593.1"
                     /translation="VRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGYLTEAVRRRPYSV
                     ILLDEVEKAHPDVFNILMQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELAGD
                     DSAEAYTQMKAAVMAVVQAHFRPEFINRLDDIVVFHPLDKAQIREIAKIQLRGLEKRL
                     HERGIALSLSDGALTLLGNVGFDPVYGARPLKRAIQAQIENPLAQRILAGGFGSGDTV
                     HVDVEGGRLVFRK"
BASE COUNT          354 a          983 c          951 g          350 t
ORIGIN      
        1 ttcttccgcc gcgtgctgcg cacgccccaa cccgcgccgg cgccggcgcc ggccgcaccc
       61 gccgaggcgg ccgcgccgca ggagcgccgc gcggcggcgc gcgtcaccgc gcgcgagggc
      121 ctgcgcgtgc tggtcatcga cgactccacc acgatcattg cggtgctcgg caagatgctg
      181 cgccagaacg gctacgaggt gaccggcgcc ggcgacgcgg aagcgggcat cgtcgccgcg
      241 cgcacgctca agccggacct gatctacctc gacatcgtcc tgcccggcat gaacggcttc
      301 gacgcgctgc gcgcgctgcg ccgcgaggac gccacccgcg acaccccgat catcatgatc
      361 agcggcaacg tgcaggcgac cgagcagttc tacgtcaagc ggatcggcgc cgacgatttc
      421 atgaagaagc cgttcggccg cggcgaggtg ttcatgcgca tccaggacct ggtcgaggcg
      481 gggcggctgc cggcccgcgc cgcgccgccg ccggaactgc tcgcggacga cggcagcatc
      541 gccccggccg acgccagcga cccggccgga cgggagacgg ccggcgcgtc cgtggcggac
      601 agcggacgct gaaccgcggg cggcccgccc gcccaccgac cggcgccggc gcggcgttcc
      661 gcccattcac ggcgtctcgc catcgctccc gttgtgctgg gccgccacgc agcggaggcc
      721 ggcgcccgga tggacctgaa cagcggctac cccttctggg cgatcagcaa cggcctgctg
      781 cgtgcgttcc cgccgctcgc ggcggatgcg cgctgcgacg tcgcggtggt cggcggcggc
      841 atcagcggcg ccctgatcgc cgatgagctg gtcgcgcatg ggcacgaggt cgtggtgctc
      901 gaccggcgcg acatcggctg gggcagcacc gccgcgagca cggcgctgct gcagtacgag
      961 atcgacgtgc cgatggtgga cctcgcgcgc cgcctgggcg aagacgccgc gacggccgcc
     1021 taccgcgcct gcgccgaggc catcggcctg ctgcaggaca aggccggcga ggtcggcgac
     1081 accggcttcc ggcggatgga cagcctctac tacgccagcc gcgggcgcca cgccgcgcgc
     1141 ctgcgcgcgg agcaggcgat gcgccaccgg cacgggctgc agtgcgaatg gctgggggcc
     1201 ggcgcggtgc gcgagcgcta cggcttcgag gcgccggccg cgctgctgag ccggcccgcg
     1261 gcgacggtcg atccctaccg catgacctac cgcctgctgg aacgggcgcg gcaacgcggc
     1321 gcgcgggtgc acgaccgcac caccgtcgcc gcgatcgcgc ccggcgcgcg cggcgtggtc
     1381 ctgcgcacgg cggccgggcc gcgcatcacc gcacggcagg tggtgctggc ggccggctac
     1441 gagacccagg cctggctgcc gcgcaaggtc gcccgcaacc gcagcacgta cgccttcgtc
     1501 accgacccgc tcgaaccgac gctgctcggg ccgctgcgca ggacgatcgc ctgggagacg
     1561 gcgcgcccct acctttacct gcgcagcacc cgcgatggcc gggtgatggc cggcggcgag
     1621 gacgacgcga tcgacatccc gcaacgccgc gacgcccgcg tcggccgcaa ggcgcgccgg
     1681 ctcgccggca aggtcgcggc gctgttcccg cggctgccgc tgcagccggt gttcgcgtgg
     1741 gccggcacct tcgccgagac cgacgacggc ctgccgttct tcgggccgca cccgcgctac
     1801 gggccgcggg tgcagttcgc gatggcctac ggcggcaacg gcatcgtctt cagcatgctc
     1861 ggtgccggcc tgctgcgcgc ccgcatcgag cgccgccgcc atccgctggc ggcgctgttc
     1921 gggttcgacc ggcggtagcg gctacttgcg gaagacgagg cggccgcctt ccacgtccac
     1981 gtgcacggtg tcgccgctgc cgaagccgcc ggcgaggatg cgctgggcca gcgggttctc
     2041 gatctgcgcc tggatcgcgc gcttgagcgg gcgcgcgccg tacaccgggt cgaagccgac
     2101 gttgccgagc agggtcagcg cgccgtccga cagcgacagc gcgatgccgc gttcgtgcag
     2161 ccgcttctcc agcccgcgca gctggatctt cgcgatttcg cggatctgcg ccttgtcgag
     2221 cgggtggaac acgacgatgt cgtcgagccg gttgatgaac tccgggcgga aatgcgcctg
     2281 caccacggcc atgaccgcgg ccttcatctg ggtgtaggcc tccgccgaat cgtcgccggc
     2341 cagttcctgg atctggtgcg agccgaggtt ggacgtcatc acgatgacgg tgttgcggaa
     2401 atccaccgta cggccctgcc cgtcggtcag gcggccgtcg tccagcacct gcatcaggat
     2461 gttgaacacg tccggatgcg ccttctccac ctcgtccagc aggatcacgc tgtaggggcg
     2521 acgacgcacg gcttcggtca gatagccgcc ttcctcgtag ccgacgtagc ccgggggcgc
     2581 gccgatcagg cggctcacgg aatgcttctc catgaactcg ctcatgtcga tgcgaacc
//
LOCUS       DATIQC010000150         4982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_293024, whole genome shotgun sequence.
ACCESSION   DATIQC010000150 DATIQC010000000
VERSION     DATIQC010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4982
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293024"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..373
                     /locus_tag="VLM17_03185"
     CDS             77..373
                     /locus_tag="VLM17_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HSR64594.1"
                     /translation="MPAPTSNAAVTRDGEALRFAGPLLRAQVAAGWRQALPLLAGVRR
                     FDLTAVERVDSAGMALLAELAARVGAPVTIAGTPAGYEALCAAYRLTPALAFAR"
     gene            415..1491
                     /locus_tag="VLM17_03190"
     CDS             415..1491
                     /locus_tag="VLM17_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaA family lipoprotein"
                     /protein_id="HSR64595.1"
                     /translation="MDRPSPRLLPMLVLCALAPLAQAQDQASATPAPLAQATAPVSAP
                     LPPPSTSPADASPAPEVQRPADAIVVPPVPPAAAPQTSPTPAAGASSGIPTQAEQDYN
                     AIYGGQDYNPVADPTLPPPAQLPVSFDPWERWNRKVHRFNNGVDRHVAKPLAKAYVAV
                     VPRPVRLGVSNFFSNLGQPVSALNALLQGKPKQAVQALDRFALNTTLGVGGLFDPATD
                     AHLPLHSEDFGQTLGVWGWKRSRYVELPLFGPRTVRDVLGMAGDSPLAPLPHIEEDKV
                     RVFLQGLQLVDIRTQLFAVDSMREGAADDYTLVRDAWLQRRNYQISGDQQKASDESLP
                     DYLQDDTSNPSVPVDAMPMPDSVR"
     gene            complement(1507..3042)
                     /gene="rmuC"
                     /locus_tag="VLM17_03195"
     CDS             complement(1507..3042)
                     /gene="rmuC"
                     /locus_tag="VLM17_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014648940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HSR64596.1"
                     /translation="MSSLLILFAVPLTGLLVYLALARLLRARASAAPELALLREERDR
                     LAAEAATLRGEVLRQAADLARSEERAAAATRQEAELHAASERARAAEVRAAAAGQVHA
                     EREEAVRQLQARLAGAEQLQSDLRARLSQREREQAEAAANLAHSERANAEMRAFLEDA
                     RARLSATFAELAGKTFDERAQRAAQQSRGDLEALLKPFAERLDGFRQRVDTLYGEEAK
                     ERAALVGAVNELKTLNQDMATQAASLTRALRGNAKVRGDWGELMLENVLRGSGLEEGA
                     HYERQQSSTDDAGRRLRPDVVVRLPGERRIVVDSKVNLVAWEEAMNADTPEAQQDALR
                     RHAVALRQHVRDLAERDYPRAVGASALDVTVAFVPIEGALSAALGFDGALQAEAFERG
                     VVFASPNTLMAVLRVVDRIWTREKIQKQALEISKAGGLLLDALVGFLDDFNEVGNSLK
                     DATDAFRSAHNRLETSSQAVLPRARRLVELGARGKRALPEALVPEEAEPLATMASGEL
                     PPA"
     gene            3165..3425
                     /locus_tag="VLM17_03200"
     CDS             3165..3425
                     /locus_tag="VLM17_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64597.1"
                     /translation="MEAESSPARLRLQRYRDEGGRAGVAGFADLPQGLAVEFGDGRVY
                     LYNYDCPGRFHVEHMKALASQGPRLSTYISRHVGKRYAARLR"
     gene            complement(3561..3977)
                     /locus_tag="VLM17_03205"
     CDS             complement(3561..3977)
                     /locus_tag="VLM17_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR64598.1"
                     /translation="MAFSTNSGGGPMADINVTPLVDVMLVLLIIFMVTAPILSYPIDI
                     DLPQKVLNPPPQTKEPPPPIRLRIDASGQIYWNDSPTPLSALKSMMETEVERDPTNQP
                     TLEIDTNGDADYGVLAKVMATARNAQMQKIGFVKKQ"
     gene            complement(3990..4415)
                     /locus_tag="VLM17_03210"
     CDS             complement(3990..4415)
                     /locus_tag="VLM17_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005912447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR64599.1"
                     /translation="MAFSTGNESGAPMSEINVTPLVDVMLVLLIIFMITAPLMSHKIK
                     VELPQANLEHRDEKLPPAPPVTVTVKENGSLYWNDSPVTKDLLESQLAVTAQRTPQPE
                     VQIRADDTTKYRIIEDVVNTAQAQGIAKVGFVATKERPR"
     gene            complement(4460..>4982)
                     /locus_tag="VLM17_03215"
     CDS             complement(4460..>4982)
                     /locus_tag="VLM17_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSR64600.1"
                     /translation="PNAQDAIRYMEEQPRSEPFSKIALDAAQAAAHHQRHEGSRLVES
                     LNRSEFVDRALRQAVTRESMRLESGLTVLATVGSTAPFVGLLGTVWGIYGALIRIGAS
                     GQASIDAVAGPVGEALIMTALGLFTAIPAVLAYNFFVRLNRVTYNKFDTFAHDLHDFF
                     ATGARVGEAPAKR"
BASE COUNT          674 a         1788 c         1769 g          751 t
ORIGIN      
        1 cagttcgaca acgagctgac cggcaagtcg atccgccagg tcgcgggcga actgcgcaat
       61 ggccagctgc aggccgatgc ccgcacccac cagtaacgcc gcggtgaccc gggacggcga
      121 ggcgctgcgc ttcgccggcc cgctgctgcg cgcccaggtc gcggccgggt ggcggcaggc
      181 gctgccgctg ctggccggcg tgcgccggtt cgacctgacc gccgtcgagc gcgtcgacag
      241 cgccggcatg gccctgctgg ccgaactggc cgcgcgcgtg ggcgcgccgg tcacgatcgc
      301 cggcacgccc gcaggctacg aggcgctgtg cgcggcctac cgcctcacgc cggcgctcgc
      361 attcgcgcgc tgatccgcat cgcgccggcc cccgccagcc cctacacttt ccgcatggac
      421 cgcccttctc cccgcctgtt gccgatgctg gtcctgtgtg cgcttgcccc gctggcgcag
      481 gcgcaggacc aggcatccgc cacgcccgca ccgctggccc aggccaccgc accggtctcg
      541 gcgccgctgc cgccgccatc gaccagcccg gccgacgcct ccccggcgcc cgaggtgcag
      601 cgtccggccg acgccatcgt cgtgccgccc gtcccgcccg ccgcggcgcc gcagacgtcg
      661 ccgacgcccg cggcaggcgc cagcagcggg atcccgacgc aggccgagca ggactacaac
      721 gccatctacg gcggccagga ctacaacccg gtcgccgatc cgaccctgcc gccaccggcg
      781 cagctgccgg tgagcttcga cccgtgggag cggtggaacc gcaaggtgca ccgcttcaac
      841 aacggcgtcg accggcatgt ggccaagccg ctggcgaagg cctatgtcgc ggtggtgccg
      901 cggccggtgc gcctgggcgt cagcaatttc ttcagcaacc tcggccagcc ggtgagcgcg
      961 ctcaacgcgc tcctgcaggg caagccgaag caggccgtgc aggcgctcga ccgcttcgcg
     1021 ctcaacacca cgctcggcgt cggcggcctg ttcgacccgg cgaccgacgc gcacctgcca
     1081 ctgcacagcg aggacttcgg ccagacgctc ggcgtgtggg gctggaagcg ctcgcgctac
     1141 gtcgagctgc cgctgttcgg cccgcgcacc gtgcgcgacg tgctcggcat ggccggcgac
     1201 tcgccgctgg cgcccttgcc gcacatcgag gaagacaagg tgcgcgtgtt cctgcagggc
     1261 ctgcagctgg tcgacatccg cacccagctg ttcgcggtcg acagcatgcg cgagggcgcc
     1321 gccgacgact acaccctggt gcgcgacgcc tggctgcagc ggcgcaacta ccagatctcc
     1381 ggcgaccagc agaaggcgtc ggacgagtcg ctgccggact acctgcagga cgacacgtcc
     1441 aatccgagcg tgccggtcga cgcgatgccg atgccggaca gcgtgcgctg aggccgggtc
     1501 ggacgctcag gccggcggca gttcgccgct ggccatcgtc gcgagcggtt cggcttcttc
     1561 cggcaccagc gcctcgggca gcgcacgctt gcccctggcg ccgagctcga ccagccgacg
     1621 ggcgcgcggc aacaccgcct ggctggaggt ttcgaggcgg ttgtgcgcgg agcggaacgc
     1681 gtccgtcgca tccttcaggc tgttgccgac ctcgttgaag tcgtcgagga agccgaccag
     1741 cgcatccagc agcaggccgc cggccttgct gatctccagc gcctgcttct ggatcttctc
     1801 gcgcgtccag atgcggtcga ccacgcgcaa caccgccatc agcgtgttcg gcgaggcgaa
     1861 caccacgccg cgctcgaacg cctccgcctg cagcgcgccg tcgaagccga gcgccgccga
     1921 cagcgcgccc tcgatcggca cgaaggcgac ggtgacgtcg agcgcggaag cgccgaccgc
     1981 acgcgggtag tcgcgctcgg cgaggtcgcg cacgtgctgg cgcagcgcga cggcgtgccg
     2041 gcgcagcgcg tcctgctggg cctccggcgt gtcggcgttc atcgcttctt cccaggcgac
     2101 caggttgacc ttgctgtcga ccacgatgcg gcgctcgccc ggcagccgca ccacgacgtc
     2161 cgggcgcagg cggcggccgg cgtcgtcggt gctggactgc tggcgttcgt agtgcgcgcc
     2221 ctcctccagc ccggagccgc gcagcacgtt ctccagcatc agctcgcccc agtcgccgcg
     2281 caccttggcg ttgccgcgca acgcgcgcgt gagcgatgcc gcctgcgtgg ccatgtcctg
     2341 gttgagcgtc ttcagttcat tgaccgcgcc aacgagcgcg gcgcgctcct tcgcctcctc
     2401 gccgtacagg gtgtcgacgc gctggcggaa gccgtcgagg cgttcggcga agggcttgag
     2461 cagcgcctcg aggtcgcccc tggactgctg ggcggcacgc tgcgcgcgct cgtcgaaggt
     2521 cttgccggcg agctcggcga aggtcgccga caggcgcgcc cgcgcatcct cgaggaaggc
     2581 gcgcatctcg gcgttggcgc gttcgctgtg ggcgaggttg gcggccgctt cggcctgctc
     2641 gcgttcgcgt tgcgacaggc gggcgcgcag gtcggactgg agctgttcgg cgccggccag
     2701 ccgcgcctgc agctggcgca cggcttcctc gcgttcggca tgcacctgcc cggcggcggc
     2761 ggcgcgcact tcggcggcgc gggcgcgctc gctggccgcg tgcagctcgg cctcctgccg
     2821 ggtcgccgcc gcggcgcgct cctccgatcg cgccaggtcc gcggcctggc gcagcacctc
     2881 gccccgcagc gtcgccgctt cggcggccag ccggtcgcgc tcctcgcgca acagcgcaag
     2941 ttccggcgcc gcggaagcgc gcgcgcgcaa cagccgcgcc agggcgagat agaccagcag
     3001 cccggtcaac gggacggcga acaggatcag cagggacgac atggcgggga cgggccggaa
     3061 gacgggtccc agtctatcgg cgacgggtct cagcggctgc gccgccgcgc acgccgggcc
     3121 acttcatccg ccgcacaccc gccgtttcct aggatcggac cgccatggaa gctgaatcct
     3181 cccccgccag gctccggctg cagcgctacc gcgacgaagg cgggcgcgcg ggcgtggccg
     3241 gcttcgccga cctgccgcag ggactggcgg tcgaattcgg cgacggtcgc gtctacctct
     3301 acaactacga ctgcccgggc cgcttccacg tcgagcacat gaaggcgctg gccagccagg
     3361 ggccgcggct gagcacctac atcagccgcc acgtcggcaa gcgctacgcc gcgcgcctgc
     3421 gctgagggcg cgagcgggcg gttgcccgat tccttcctcc tcgcacgcca cccgcgcaaa
     3481 agaaagggcc gcccggtggg cggcccaaag aggttggtaa gcgtcgtggc gcggggcgcc
     3541 ggtactgcgg ttgcgttgcg ttactgcttc ttcacgaagc cgatcttctg catctgcgca
     3601 ttgcgggcgg tcgccatgac cttggccagc acgccgtagt ccgcgtcgcc gttggtgtcg
     3661 atctccagcg tcggctggtt ggtcggatcc cgctcgactt ccgtttccat catgctcttc
     3721 agcgcggaaa gcggggtcgg gctgtcgttc cagtagatct ggcccgacgc gtcgatgcgc
     3781 aggcggatcg gcggcggcgg ttccttggtc tgcggcggcg ggttgagcac cttctgcggc
     3841 aggtcgatgt cgatcggata cgagaggatc ggcgcggtca ccatgaagat gatcagcagc
     3901 accagcatca cgtccacgag gggcgtgacg ttgatgtcgg ccatcgggcc gccgccggag
     3961 ttggtactga atgccatcgt gcgtgctcct cagcgcggcc gttctttggt ggcgacgaag
     4021 ccgaccttgg cgatgccctg cgcctgggcg gtattcacca cgtcctcgat gatccggtac
     4081 ttggtggtgt cgtcggcgcg gatctgcact tccggctgcg gagtgcgctg cgcggtgacc
     4141 gcgagctggc tctccagcag gtccttggtg acgggcgaat cgttccagta caggctgccg
     4201 ttttccttca cggtgaccgt caccggcggt gctggcggca gcttctcgtc gcggtgctcg
     4261 aggttggcct gcggcagctc aaccttgatc ttgtgcgaca tcagcggcgc cgtgatcatg
     4321 aagatgatca ggaggaccag catcacgtcc acgaggggcg tgacgttgat ctccgacatc
     4381 ggggcgccgc tttcgttgcc agtgctgaag gccatcggcc ggactccgta gtgctatcga
     4441 acggcttgct tgcagtgact cagcgcttgg ccggggcttc gccgacgcgg gcgccggtgg
     4501 cgaagaagtc gtgcaggtcg tgcgcgaagg tgtcgaactt gttgtaggtc acgcggttca
     4561 ggcgcacgaa gaagttgtac gccagcaccg ccgggatcgc ggtgaacagg ccgagcgcgg
     4621 tcatgatcag cgcctcgccg accgggccgg cgaccgcgtc gatcgacgcc tggccggacg
     4681 caccgatgcg gatcagggcg ccgtagatgc cccacacggt gccgagcaga ccgacgaacg
     4741 gggcggtcga accgacggtg gcgagcacgg tcaggccgga ctcgaggcgc atcgactcgc
     4801 gggtgacggc ctggcgcagg gcgcggtcga cgaactcgga acggttcagc gactcgacca
     4861 ggcgcgagcc ctcgtggcgc tggtggtggg cggcggcctg ggcggcgtcg agcgcgatct
     4921 tcgagaacgg ctcgctgcgc ggctgctctt ccatgtagcg gatcgcgtcc tgcgcgttcg
     4981 gg
//
LOCUS       DATIQC010000151         1933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_293147, whole genome shotgun sequence.
ACCESSION   DATIQC010000151 DATIQC010000000
VERSION     DATIQC010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293147"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..1474
                     /gene="nirK"
                     /locus_tag="VLM17_03220"
     CDS             50..1474
                     /gene="nirK"
                     /locus_tag="VLM17_03220"
                     /EC_number="1.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019467040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050421 - nitrite reductase (NO-forming)
                     activity [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper-containing nitrite reductase"
                     /protein_id="HSR64601.1"
                     /translation="MASAAPSDTGGSLKGDFGPPQGQPIEAVLTDPPFVPPPVNRDYP
                     AKVNVELDVVEKEMPISEGVTYTFWTFGGQVPGKFIRVRQGDTVVMHLRNMPDSKMPH
                     NIDLHGVTGPGGGAASSFTAPGHVSRFTFKALNAGLFVYHCATAPVGMHIANGMYGLI
                     LVEPPGGLPKVDHEYYVMQGDFYTTGKYHEKGHQPFDMEKAIDEHPTYVLFNGREGAL
                     TGDNALKAKTGETVRLFVGNGGPNLVSSFHVIGEIFDKVWFEGGTRFQENVQTTLIPS
                     GGAAIMDFHLEVPGTYLLVDHSIFRTFNKGALAMLKAEGPERKDIYSGKEVDAMYTGG
                     RAAPNLAAVATAAQANASGTLTKEDQIKAGQALFAGTCSTCHQANGEGVQGVFPPLAK
                     SSVLHDNPKRIVEIMLHGLSGPVTVNGQSFNSVMPPQTQLTDDEVANIGTYVLNNWGN
                     PGGQVHKDEVAEKRKAGGGAAPAE"
     gene            1482..>1933
                     /locus_tag="VLM17_03225"
     CDS             1482..>1933
                     /locus_tag="VLM17_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008437016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HSR64602.1"
                     /translation="MRRLAALLLCVLPVAGVLAGSAGYVRLPGGSFRTALKYEDRKAG
                     TVRIAPFALMKRPVTNAEFLAFVQRHPQWRRDRVARTLADARYLGQWKAPTVLASPSQ
                     AQQPVTQVSWFAADAYCQAEGARLPTWSEWEYAAAADETRTDARRDPA"
BASE COUNT          327 a          695 c          661 g          250 t
ORIGIN      
        1 cgtcgtcgcc atcgccggct ggtcgcaggg cgcggcgccc gacaaggccg tggccagcgc
       61 cgcgcccagc gacaccggcg gttccctcaa gggcgacttc ggcccgccgc agggccagcc
      121 gatcgaagcc gtgctcaccg acccgccctt cgtgccgccc ccggtcaacc gcgactaccc
      181 ggccaaggtc aacgtcgagc tggacgtggt cgagaaggag atgccgatct ccgagggcgt
      241 gacctacacg ttctggacct tcggtggcca ggtgccaggc aagttcatcc gcgtgcgcca
      301 gggcgacacg gtggtgatgc acctgcgcaa catgccggac agcaagatgc cgcacaacat
      361 cgacctgcac ggcgtcaccg gccctggtgg cggcgcggcg tcgagcttca ccgcgccggg
      421 ccacgtctcg cgcttcacct tcaaggcgct caatgccggc ctgttcgtct accactgcgc
      481 gaccgcgccg gtgggcatgc acatcgccaa cggcatgtac ggcctgatcc tggtcgagcc
      541 gccgggcggc ctgcccaagg tcgaccacga gtactacgtg atgcagggcg acttctacac
      601 gaccggcaag taccacgaga agggccacca gcccttcgac atggagaagg cgatcgacga
      661 gcacccgacc tacgtgctgt tcaacggccg cgagggcgcg ctcaccggcg acaacgcgct
      721 caaggccaag accggcgaga cggtgcggct gttcgtcggc aacggcggcc cgaacctggt
      781 gtcgagcttc cacgtgatcg gcgagatctt cgacaaggtc tggttcgagg gcggcacgcg
      841 cttccaggag aacgtgcaga ccacgctcat cccgtcgggc ggcgcggcga tcatggactt
      901 ccacctggag gtgccgggca cctacctgct ggtcgaccac tcgatcttcc gcaccttcaa
      961 caagggcgcg ctggcgatgc tcaaggccga gggcccggag cgcaaggaca tctactcggg
     1021 caaggaagtc gacgcgatgt acaccggcgg acgggccgcg cccaacctgg ccgcggtcgc
     1081 caccgcggcg caggcgaacg cgtccggcac gctgaccaag gaggaccaga tcaaggccgg
     1141 gcaggcgctg ttcgccggca cctgctccac ctgccaccag gccaacggcg agggggtgca
     1201 gggcgtgttc ccgccgctgg ccaagtcgag cgtgctgcac gacaacccca agcgcatcgt
     1261 cgagatcatg ctgcacggcc tgagcggccc ggtcaccgtc aacggccaga gcttcaactc
     1321 ggtgatgccg ccgcagacgc agctgaccga cgacgaggtg gccaacatcg gcacctacgt
     1381 gctcaacaac tggggcaacc ccggtggcca ggtccacaag gacgaggtcg ccgagaagcg
     1441 caaggccggc ggcggcgccg cgccggcgga gtgaggaaac gatgcgtcgg ctcgccgccc
     1501 tgctgctgtg cgtgctcccc gttgccggcg tcctcgccgg cagcgcgggt tacgtgcggc
     1561 tgccgggcgg cagcttccgc accgcgctga aatacgagga ccgcaaggcc ggcacggtgc
     1621 gcatcgcgcc gttcgcgctg atgaagcggc cggtgaccaa cgccgagttc ctcgccttcg
     1681 tgcagcggca tccgcagtgg cggcgcgacc gcgtcgcccg cacgctggcg gatgcgcgct
     1741 acctcggcca gtggaaggcg cccaccgtgc tcgccagccc gtcgcaggcg cagcagccgg
     1801 tgacgcaggt gagctggttc gccgccgatg cctactgcca ggccgagggc gcgcgcctgc
     1861 ccacgtggtc ggaatgggaa tacgccgccg cggccgacga aacgcgcacc gacgcgcgcc
     1921 gcgacccggc ctg
//
LOCUS       DATIQC010000152         6415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_10515, whole genome shotgun sequence.
ACCESSION   DATIQC010000152 DATIQC010000000
VERSION     DATIQC010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6415
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10515"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..368)
                     /locus_tag="VLM17_03230"
     CDS             complement(<1..368)
                     /locus_tag="VLM17_03230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64603.1"
                     /translation="MDRIRAALAASLLCAPLACFAQATVPDRFGYCFVIDVPLRALWT
                     TPVYEADIPPGRLNDQVEQDKSQFRALIGQRARLAGDTDATCTYVATRAEAEQQVERL
                     RKSFRFSRVDWTQVAWASSPL"
     gene            487..1143
                     /locus_tag="VLM17_03235"
     CDS             487..1143
                     /locus_tag="VLM17_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011487287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSR64604.1"
                     /translation="MPALPRLYAHPFSSYSQKALVALYEHGIAFEYRTLEEPEARAEL
                     AALWPMRRFPVLVDGDRTILEATCIVEHLDLHHRGAARLIPADPDAALQVRMLDRFFD
                     NYVSTPQQKLVFDRLRPEAVRDAHGVGEARSMLDTAYAWLDHYMAGRAWAAGDFSLAD
                     CAAAPFLFYADWTHPIPGAFANVRAYRARLLARPSFARAVDEARPFRSYFPLGAPDRD
                     "
     gene            complement(1199..1633)
                     /locus_tag="VLM17_03240"
     CDS             complement(1199..1633)
                     /locus_tag="VLM17_03240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64605.1"
                     /translation="MKTWMVVALPLVLACGCARAQQVIYTCAGKEGARILQDTPCADA
                     GLRQLAARSFAAPRDPPDAARRLEAIDRQVHAEWAAERRVESPRARRRVVANGTLVSR
                     RDRQRAQCDGLRARVQAAARSRHPRRDRGQLEDDAIDACFAL"
     gene            complement(1727..2302)
                     /locus_tag="VLM17_03245"
     CDS             complement(1727..2302)
                     /locus_tag="VLM17_03245"
                     /inference="COORDINATES: protein motif:HMM:NF017819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF924 family protein"
                     /protein_id="HSR64606.1"
                     /translation="MSAGVAGAHRSDEPAWVGDVLDFWFGMPEDLWWRKDAGFDDRIR
                     ARFLALHESLLAGGGHGIASPRAALAAVIALDQFGRNMFRGDPRAYAADPVARKIALD
                     AIDAGRDAGMAKDERLFLYMPLQHSEDVADQRRAVALVAALGDAELTHFAEAHCRIIE
                     RFGRFPHRNGILGRASTAEEEASLQEPMGRF"
     gene            complement(2299..3924)
                     /locus_tag="VLM17_03250"
     CDS             complement(2299..3924)
                     /locus_tag="VLM17_03250"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HSR64607.1"
                     /translation="MADVFVSYSRQDRPRVAPLVRAVEDRGWSVWWDPEIAPGQEFDR
                     LIARQLDAAAAVLVVWTPGSVESRWVRGEARVAAERGVLVPVRFDHAELPIDVRSFHT
                     IDLDDATLAAGSAPVREVLDALGTLVTHEGAAPTPAPTPADARPARPPRDRVPICVLP
                     FVNLSGDPAQDFLCDGITEDIITELSRWRILQVRSRAASFRHRGAAADLAQVARELDV
                     DFVVEGSVRRMGERVRITAQLIDAGTGSHIWAEKFDRAADEPFAVQDQVVRTIVSTLV
                     GRVQVLDTARARRKPPAALAAYECVLKGNALPWDDPEGAAQATRLFEQAIAIDPGYAM
                     AHALLAARRYGDWQLDYSGSDALLDEAWRLARRGVELDNNESTCFSILAQVCLLRHAW
                     ALCLQNAQRAVELNPGNQWNLADMGLMLTYLGRAEEALSWFRRAREIDPYFDPPWYYR
                     ATGQALMVLRREDEALAMFDQLGTGHFRFSALRAACHARLGHAAEASAHAAACLALKP
                     DFTIARFLRKEPFRDAGDADRLAESLRMAGLPA"
     gene            4058..4609
                     /locus_tag="VLM17_03255"
     CDS             4058..4609
                     /locus_tag="VLM17_03255"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008216743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSR64608.1"
                     /translation="MRRLPTLAVLATCLLASPAFAALKPGAPAPTFSAPAYLAGKAFT
                     FDLADALKKGPVVVYFFPAAHTSGCNLEAHLFSQAIDKFKARHASVIGVTAGNTDQLA
                     DFSKETEHCSGKFPVAADPGAKIAAQYDAVLAQKPEWSNRTSYLIAPDGTIAAAYSDL
                     NPNKHVQEMLDAAKAIGRETPRH"
     gene            4798..6177
                     /locus_tag="VLM17_03260"
     CDS             4798..6177
                     /locus_tag="VLM17_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HSR64609.1"
                     /translation="MDRDTGPDLAPARRRVRLLGLFLLGLGALHAADSRAVPSYARQT
                     QQPCTGCHVGGFGPQLTAFGRQFKLSGYTLKVGETAHLPLSAMVVESWTHTARDQADP
                     PAAHFGRNDNTELQQASVFLAGRLGEHLGAFAQATYSENGAVLGWDNAELRYARTFTG
                     THHDGVWGLTLNNNPTVTDVLNTAPAWQYPFMAADLAPEAPAAPLLFGGLGGQVVGAT
                     AYAQVDGKWYFEAGGYRTLSPAFLRHVNADYDGRLSGLAPYARLTRNWDAWGGNVTLG
                     AFALSARRGLTSEDAGGRVAPVPGPTDRFRDFGVDASYQNLGDGTHAFTVNALAVHER
                     QRLDATFPAGGAEHRDGTLRAYNLNGSYWYRNTWGATTGVFAYDGSSDALLYPDTGAP
                     DTRGGIAELDWNPFGQSGSWGQPWANLRVGLQYTWYTRFSGATHDIDGAGRSAHDNNT
                     TFLYVWLAL"
     gene            6200..>6415
                     /locus_tag="VLM17_03265"
     CDS             6200..>6415
                     /locus_tag="VLM17_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="azurin"
                     /protein_id="HSR64610.1"
                     /translation="MRAFLLLLALSAAASAHAGNCSIDLKTSDAIKYDQRSVTVSPDC
                     REITVTLAHTGRLPVQTMGHNVVIAAAD"
BASE COUNT          912 a         2430 c         2215 g          858 t
ORIGIN      
        1 agcggcgacg acgcccacgc gacctgcgtc cagtccaccc ggctgaagcg gaaggacttg
       61 cgcaggcgct cgacctgctg ctcggcctcc gcgcgcgtcg cgacgtaggt gcaggtcgcg
      121 tcggtgtccc cggccaggcg cgcgcgctgg ccgatcagcg cccggaactg cgacttgtcc
      181 tgttcgacct ggtcgttcag ccgccccggc gggatgtccg cctcgtagac cggcgtcgtc
      241 cacaacgcgc gcaggggcac gtcgatcacg aagcagtagc cgaagcggtc aggcaccgtg
      301 gcctgggcga agcacgccag cggcgcgcac agcagcgatg cggccagcgc cgcgcggatg
      361 cgatccatgt ttccctcccc tggttgcccc atcctagcgg acctcggcag gccgggcgcc
      421 gcgcggcgga tgtcgatccg cctccgctcc gttcgtcgtc cgacgtcacc ctccggatat
      481 ccgcccatgc ccgccctgcc ccgcctgtac gcccacccgt tctcgtccta ctcgcagaag
      541 gcgctggtcg cgctgtacga gcacggcatc gccttcgagt accgcaccct cgaggagccg
      601 gaggcgcggg ccgaactcgc cgcgttgtgg ccgatgcggc gcttcccggt gctggtggac
      661 ggcgaccgca cgatcctgga agcgacctgc atcgtcgagc acctcgacct gcaccatcgc
      721 ggcgccgcgc gactgatccc cgcagacccc gacgcagcgc tgcaggtgcg catgctcgac
      781 cgcttcttcg acaactacgt gtcgacgccg cagcagaagc tggtgttcga ccgcctgcgc
      841 ccggaagcgg tgcgcgacgc gcacggcgtc ggcgaggcgc gctcgatgct cgataccgcc
      901 tacgcctggc tcgaccatta catggccggg cgcgcgtggg cggcgggcga cttcagcctc
      961 gccgactgcg cggcggcgcc gttcctgttc tacgcggact ggacgcatcc gatcccgggg
     1021 gcattcgcca acgtgcgcgc ctaccgcgcg cgactgctgg cccggccgtc gttcgcgcgc
     1081 gcggtcgacg aggcgcggcc gttccgctcc tacttcccgc tcggcgcgcc cgaccgcgac
     1141 tgaaccggcc gcccgaagac ccgttgcctc gggggcagcg atcccgcccc ggcgccgctt
     1201 acaacgcgaa gcaggcgtcg atggcgtcgt cctctagctg gccgcgatcg cggcgcggat
     1261 ggcggctgcg cgccgccgcc tggacccggg cacgcaggcc gtcgcattgc gcacgctgcc
     1321 ggtctcggcg gctgaccagc gtgccgttgg ccacgacgcg ccggcgggcg cgtggcgatt
     1381 caacgcgccg ctccgccgcc cactccgcgt gcacctggcg gtcgatggcc tccagccggc
     1441 gcgcggcgtc gggcggatcg cgcggcgcgg cgaagctgcg cgccgccagc tggcgcaggc
     1501 ccgcgtcggc gcagggcgtg tcctgcagga tgcgcgcgcc ttccttgccg gcgcaggtgt
     1561 agatgacctg ctgcgcccgc gcgcacccgc aggccaggac caacggcaat gccaccacca
     1621 tccatgtctt catcggcgtc cttcccggga gtcgcctcat cctcgcgcgt cggagggccg
     1681 cgaaaccgcg cttacgcgaa aatcaggaaa acccgacccc ggacggtcag aacctgccca
     1741 tcggttcctg cagcgaggcc tcttcctccg ccgtcgacgc gcggccgagg atcccgttgc
     1801 ggtgcgggaa acggccgaac cgttcgatga tccggcaatg cgcctcggcg aagtgcgtca
     1861 attccgcatc gccgagcgcg gccaccagcg cgaccgcgcg gcgctggtcg gcgacgtcct
     1921 cgctgtgctg cagcggcatg tacaggaaca gccgctcgtc cttcgccatg cccgcgtccc
     1981 ggccggcgtc gatggcgtcc agcgcgatct tccgcgcgac ggggtcggcg gcgtaggcac
     2041 gcgggtcgcc gcggaacatg ttgcggccga actggtcgag cgcgatcacc gcggcgagcg
     2101 ccgcgcgcgg cgaggcgatg ccatgcccgc cgccggcgag cagcgattcg tgcagggcga
     2161 ggaagcgcgc gcggatgcga tcgtcgaatc ccgcgtcctt gcgccaccac aggtcttcgg
     2221 gcatcccgaa ccagaagtcg agcacgtcgc cgacccaggc cggttcgtcg cttcggtgcg
     2281 cacccgcgac cccggcgctc atgcgggcag cccggccatt cgcagcgatt cggcgagcct
     2341 gtcggcatcc cctgcatcgc ggaagggttc cttgcggagg aaccgggcga tggtgaagtc
     2401 gggcttgagc gccaggcagg ccgccgcgtg cgcgctggcc tcggcggcat gcccgagccg
     2461 tgcgtggcag gccgcgcgca aagcggaaaa gcggaagtgc ccggtgccga gctggtcgaa
     2521 catggccagc gcctcgtcct cgcgccgcag caccatcagc gcctggccgg tcgcgcggta
     2581 gtaccacggc ggatcgaaat acggatcgat ttcgcgcgcg cggcggaacc aggacagcgc
     2641 ttcctcggcg cggccgaggt aggtgagcat caggcccatg tcggccaggt tccactggtt
     2701 gccgggattg agttcgacgg cgcgctgcgc gttctgcagg cacagcgccc aggcgtggcg
     2761 cagcaggcag acctgggcga ggatcgagaa gcaggtgctc tcgttgttgt cgagctcgac
     2821 gccgcgccgc gccagccgcc aggcctcgtc cagcagcgcg tcggagccgc tgtagtccag
     2881 ttgccagtcg ccgtagcgac gcgccgccag cagggcgtgg gccatcgcgt agccggggtc
     2941 gatcgcgatc gcctgctcga acagccgggt cgcctgcgcc gcgccttccg gatcgtccca
     3001 cggcagcgcg ttccccttca gcacgcattc gtacgcggcg agcgcggccg gtggcttgcg
     3061 gcgcgcacgc gcggtgtcga gcacctgcac ccggccgacc agcgtgctga cgatggtacg
     3121 cacgacctgg tcctgcaccg cgaagggttc gtctgcggcg cggtcgaact tctccgccca
     3181 gatgtggctg ccggtgcccg cgtcgatcag ctgcgcggtg atgcgcacgc gctcgcccat
     3241 ccggcgcacg ctgccctcga ccacgaagtc gacatcgagt tcgcgcgcga cctgcgcgag
     3301 gtcggcggcg gcgccgcggt ggcggaagga ggcggcgcgc gaacgcacct gcaggatccg
     3361 ccagcgcgac agctcggtga tgatgtcctc ggtgatgccg tcgcagagga agtcctgggc
     3421 cgggtcgccg ctgaggttga cgaacggcag cacgcagatc ggcacccggt cgcgcggagg
     3481 gcgcgccggc cgcgcatccg ccggcgtcgg cgcgggcgtg ggcgcggcgc cttcgtgcgt
     3541 gaccagcgtg ccgagcgcgt ccagcacctc ccgcaccggc gcgctgccgg cggccagcgt
     3601 ggcgtcgtcg aggtcgatgg tgtggaagct gcgcacgtcg atcggcagtt ccgcgtggtc
     3661 gaagcgcacc ggcaccagca ccccgcgctc ggcggcgacc cgcgcttcgc cgcgcaccca
     3721 gcgcgactcc accgagcccg gcgtccacac caccagcacc gcggcggcgg cgtcgagctg
     3781 gcgcgcgatc aggcggtcga actcctgccc cggcgcgatc tcggggtccc accacaccga
     3841 ccagccgcga tcctccaccg cgcgcaccag cggggcgacg cgcgggcggt cctggcggga
     3901 ataggaaacg aagacgtcgg ccatgcattc agcctcgcag ccgtgccggg caggcgtcgc
     3961 gcgcccgcac tggcgggtac gcgggcggcc cggcgcaacg gacagcgcgc ggcgttgcgg
     4021 aggcgtataa caaaggcccc gttccggaga cgtctgcatg cgccgcctgc ccacgctggc
     4081 cgtcctcgcc acctgcctcc tcgcctcgcc cgccttcgcc gcgctcaagc caggcgcgcc
     4141 cgcgcccacc ttcagcgcgc ccgcctacct cgccggcaag gccttcacct tcgacctcgc
     4201 cgatgcgctg aagaaggggc cggtggtcgt gtacttcttc ccggccgcgc atacctcggg
     4261 ctgcaacctc gaggcgcacc tgttctcgca ggcgatcgac aagttcaagg cccggcacgc
     4321 cagcgtgatc ggagtgaccg ccggcaacac cgaccagctc gccgacttct cgaaggaaac
     4381 cgagcactgc agcggcaagt tcccggtcgc cgccgacccc ggcgcgaaga tcgccgcgca
     4441 gtacgacgcg gtgctggcgc agaaaccgga atggtcgaac cgcacctcct acctgatcgc
     4501 gcccgacgga acgatcgcgg ccgcctattc ggacctcaat ccaaacaagc acgtgcagga
     4561 gatgctggat gcggcgaagg cgatcggccg cgagacgccg cgccactagc gccggctccg
     4621 gcggccgcgg cggggcggcg tgctcccgcc ggcggtcgat gcggccccgc cggcgatcgt
     4681 ttcgccgatg gacggtcgcg gcccgcgccg cacgattgat cgggatcaat ccgcgaccac
     4741 gccgccggga ctacggtgca ccccgaggtc gccccgtgcg cggccgtgga ggcggcgatg
     4801 gacagggaca ccggacccga cctggccccg gcacggcgac gggtgcgcct gctgggcctc
     4861 ttcctgctgg gcctgggggc gctgcacgcg gccgacagcc gcgcggtgcc gtcctacgcc
     4921 cggcagacgc agcagccgtg caccggctgc cacgtcggcg ggttcggccc gcaactcacg
     4981 gccttcggac ggcagttcaa gctgtcgggc tatacgctca aggtcggcga gaccgcccac
     5041 ctgccgctgt cggcgatggt ggtcgagtcg tggacgcaca ccgcgcgcga ccaggccgat
     5101 ccgccggccg cgcatttcgg ccgcaacgac aacaccgagc tgcagcaggc gtcggtgttc
     5161 ctcgccggcc gcctcggcga gcacctcggc gcgttcgccc aggcgaccta cagcgagaac
     5221 ggcgcggtgc tgggctggga caatgccgaa ctgcgctacg cgcgcacgtt caccggcacg
     5281 caccacgacg gcgtgtgggg cctgacgctc aacaacaatc ccaccgtcac cgacgtgctc
     5341 aacacggcgc cggcctggca gtacccgttc atggccgccg acctcgcgcc ggaagcgccc
     5401 gcggccccgc tgctgttcgg cggcctcggt ggccaggtgg tcggcgccac cgcctacgcg
     5461 caggtcgacg gcaagtggta cttcgaggcc ggtggttacc gcacgctgtc gccggcgttc
     5521 ctgcgccacg tcaacgccga ctacgacggg cggctgtcgg gactcgcgcc ctacgcgcgg
     5581 ctcacgcgca actgggacgc ctggggcggc aacgtcaccc tcggggcgtt cgcgctctcg
     5641 gcgcggcgcg gcctgaccag cgaggacgcg ggcggccgcg tcgcgcccgt gccgggcccc
     5701 acggaccgct tccgcgattt cggcgtcgat gccagctacc agaacctcgg cgacggaacg
     5761 cacgcgttca cggtcaacgc gctcgccgtg cacgaacgcc agcggctcga tgcgaccttc
     5821 cccgcgggcg gcgccgagca tcgcgacggc accctgcgcg cctacaacct caacggcagc
     5881 tactggtacc gcaacacctg gggcgcgacg acgggcgtct tcgcctacga cggcagcagc
     5941 gatgccctgc tctatccgga cacgggcgcg cccgacacgc gcggcggcat cgccgaactc
     6001 gactggaacc ccttcggcca gtccggctca tggggccagc cctgggccaa cctgcgcgtc
     6061 ggcctgcagt acacctggta cacgcgcttc agcggcgcga cgcacgacat cgacggcgcc
     6121 ggacgcagcg cgcacgacaa caacacgacc ttcctctacg tgtggctggc cctgtagcca
     6181 gcccgaaagg agcattccca tgcgcgcctt cctgctgctc ctcgcattgt cggcggccgc
     6241 ttccgcccac gccggcaact gcagcatcga cctcaagacc agcgacgcca tcaagtacga
     6301 ccagcgcagc gtcaccgtat cgccggactg cagggagatc accgtcaccc tcgcccacac
     6361 cggccgcctg ccggtgcaga cgatgggcca caacgtggtg atcgccgccg ccgac
//
LOCUS       DATIQC010000153         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_293225, whole genome shotgun sequence.
ACCESSION   DATIQC010000153 DATIQC010000000
VERSION     DATIQC010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293225"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..894
                     /locus_tag="VLM17_03270"
     CDS             61..894
                     /locus_tag="VLM17_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSR64611.1"
                     /translation="MPDHDHPGDFPYLHGFSTTEQARLVKQARLAESTVFHDVDFSGA
                     QRVLEVGSGVGAQTEILLRRFPQLHVSCVDLNQAQLDAAGANLGRMPWLDGRYTLRQA
                     DATDLPFEPRSFDGGFLCWVLEHVPSPARVLSEVRRVLAPGAPVYITEVMNSSFLLDP
                     YSPNVWRYWMAFNDFQIDSGGDPFVGAKLGNLLLAGGFRDVQTQVKVFHLDNREPARR
                     KTMIAFWEELLLSAADQLLGAGKVTAETVDGVRREMQQVQNDPHAVFFYAFIQARALV
                     Y"
     gene            complement(866..>1779)
                     /locus_tag="VLM17_03275"
     CDS             complement(866..>1779)
                     /locus_tag="VLM17_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017915090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HSR64612.1"
                     /translation="TDNPVVRMTWHRAATHSLLVLPFVAWGLWALFRQRGGRVAADPR
                     SWFWIFQLALLAHPLVDALTIYGTQLFWPLPLPPVMVSSLFIVDPLFALPLLAACAVA
                     WFAHERPLARRALACGLALAVAYVGWSLLAKALVEQRAQRSLALLGLQSAPRFSVPMP
                     FNTLLWRVVAMTPGGFVEGETSLVADRGPIRFRAHASDAGALQAAGAIPSAARLLWFN
                     HHFAKAEVRGGELVLSDLRMGVEPDYTFRFAVAVRAGDGWHAIPPEQLHWAGASRAQL
                     AALWQRIWHAPAADAPAPLNTPAPAPG"
BASE COUNT          285 a          659 c          615 g          220 t
ORIGIN      
        1 ggcgcgaagc cgacaccggc atcgccttgc ggcccctaga ctccccccga ggagtgcccc
       61 atgcccgacc acgaccaccc cggcgacttc ccctacctgc acggcttctc caccaccgaa
      121 caggcgcgcc tggtgaagca ggcgcgcctg gcggaatcga ccgtgttcca cgacgtcgac
      181 ttcagcggtg cgcagcgcgt gctcgaggtc ggcagcggcg tcggcgcgca gaccgagatc
      241 ctgctgcggc gcttcccgca gctgcacgtg agctgcgtcg acctcaacca ggcccagctc
      301 gacgccgcgg gcgccaacct cgggcgcatg ccctggctgg atgggcgcta cacgctgcgc
      361 caggccgatg ccaccgacct gccgttcgag ccgcgcagct tcgacggcgg cttcctgtgc
      421 tgggtcctcg agcacgtgcc gagccccgcg cgcgtgctga gcgaagtgcg gcgcgtgctc
      481 gcgccgggcg cgccggtcta catcaccgag gtgatgaact cgtcgttcct gctcgacccg
      541 tattcgccga acgtgtggcg ctactggatg gctttcaacg atttccagat cgacagcggc
      601 ggcgatccct tcgtcggcgc caagctcggc aacctgctgc tcgccggcgg cttccgcgac
      661 gtgcagacgc aggtcaaggt gttccacctc gacaaccgcg agccggcgcg gcgcaagacc
      721 atgatcgcgt tctgggagga gctgctgctg tcggcggccg accagctgct cggcgccggc
      781 aaggtgaccg cggagacggt cgacggcgtg cgccgcgaga tgcagcaggt ccagaacgac
      841 ccgcacgcgg ttttcttcta cgccttcatc caggcgcggg cgctggtgta ttgagcggcg
      901 cgggcgcgtc cgccgcgggc gcgtgccaga tcctctgcca cagcgccgcc agctgcgcgc
      961 ggctggcgcc ggcccagtgc agctgttcgg gcggaatcgc gtgccagccg tcgcccgcgc
     1021 gcacggcgac cgcgaagcgg aaggtgtagt ccggctccac gcccatgcgc aggtcgctca
     1081 gcaccagctc gccgccacgc acctcggcct tggcgaagtg gtggttgaac cagagcaggc
     1141 gcgcggccga gggaatcgcg cccgcggcct gcagcgcgcc ggcatccgag gcatgcgcgc
     1201 ggaaccggat cggcccgcga tccgcgacca gcgaggtctc gccctcgacg aagccacccg
     1261 gcgtcatcgc caccacccgc cacagcaggg tgttgaacgg catcggcacc gagaagcgcg
     1321 gcgcggattg caggccgagc agcgcgagcg agcgctgcgc ccgctgctcg accagcgcct
     1381 tggccagcag cgaccagccg acgtaggcga cggcgagggc caacccgcag gccagcgcgc
     1441 gccgcgccag cggccgctcg tgggcgaacc acgcgaccgc gcacgccgcg agcagcggca
     1501 gggcgaacaa cggatcgacg atgaacaggc tcgacaccat caccggcggc aacggcagcg
     1561 gccagaacag ctgcgtgccg tagatggtca gcgcatccac cagcgggtgg gcgagcagcg
     1621 ccagctggaa gatccagaac cagctccgcg ggtcggccgc cacgcggcca ccgcgttggc
     1681 ggaacagcgc ccacaatccc cacgccacga agggcagcac cagcagcgaa tgggtggccg
     1741 cgcggtgcca ggtcatgcgc accaccggat tgtcggtca
//
LOCUS       DATIQC010000154         2318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_540574, whole genome shotgun sequence.
ACCESSION   DATIQC010000154 DATIQC010000000
VERSION     DATIQC010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540574"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..561
                     /locus_tag="VLM17_03280"
     CDS             <1..561
                     /locus_tag="VLM17_03280"
                     /inference="COORDINATES: protein motif:HMM:NF017536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin-like C-terminal cupin domain-containing
                     protein"
                     /protein_id="HSR64613.1"
                     /translation="EGGPMHGIQAWVALPDADEECEPAFDHYDAASLPALDEAGVHAR
                     LVAGAAYGVTAPVRTRSPLCYLHVALQTGARLRLPDEHPERAVYVVSGVVEVDGASYE
                     PGRMLVFRPGPAQLTALAPALLMLLGGAPLGPRFVEWNFVSSSRERIEQAKADWRAGR
                     MKLPDLDNGEFIPLPGDPPPPANAMS"
     gene            686..958
                     /locus_tag="VLM17_03285"
     CDS             686..958
                     /locus_tag="VLM17_03285"
                     /inference="COORDINATES: protein motif:HMM:NF022833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2798 domain-containing protein"
                     /protein_id="HSR64614.1"
                     /translation="MTPVHDPAARRAHQLLPAFLATCMSAFVAAVVTAINTGVDPGLA
                     ARWWHAWLRAWPCAVAAAYLFRPLAGWAALRVARWSMRVARLVDGA"
     gene            1045..1815
                     /locus_tag="VLM17_03290"
     CDS             1045..1815
                     /locus_tag="VLM17_03290"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012479002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HSR64615.1"
                     /translation="MRRPSILLAGLLALATAAPAPARTVYECLRDGTLSLATVPEPGS
                     RCVAKQARANRRQPNYWGSLGPVRGPMYRRVTGGATAYSTRAMPGWSEVQSVVALSVP
                     ADLPAHAGLGRLGTPRLDAYAAQFRAAARRSGVEDAWLRAIAHAESGFDPGARSPRGA
                     QGLMQLMPEVARAYGVADPYSPTQSIDGAARHLHGLMRRYNGDLALVAAAYNAGTGAV
                     ARYRGVPPYAETQAYVGKVQALYARYRSALRQARTSGS"
     gene            complement(1817..2098)
                     /locus_tag="VLM17_03295"
     CDS             complement(1817..2098)
                     /locus_tag="VLM17_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64616.1"
                     /translation="MSATRPLSPELEADLDALEQAMPQLQLQQPGGMFAFAGAWAERH
                     DALLARTPPAERGEMQARLRRIGIRWGLVEGARMTLQFPALPLLRRRVG"
BASE COUNT          257 a          870 c          884 g          307 t
ORIGIN      
        1 gaaggcgggc cgatgcatgg catccaggca tgggtcgcgc tgcccgacgc cgacgaggaa
       61 tgcgaacccg ccttcgacca ctacgacgcg gcgtcgctgc cggcgctcga cgaggccggc
      121 gtgcatgcgc gcctggtcgc cggcgcggcc tacggcgtca ccgcgccggt gcgcacgcgc
      181 tcgccgctgt gctacctgca cgtcgccctg cagaccggcg cgcgcctgcg cctgcccgac
      241 gagcaccccg agcgcgcggt gtacgtggtc agcggcgtgg tcgaggtgga cggcgcgtcc
      301 tacgaacccg ggcgcatgct ggtgttccgc cccggtcccg cgcagctcac cgcgctggcg
      361 ccggcgctgc tgatgctgct cggcggcgcg ccgctcgggc cgcgcttcgt cgagtggaac
      421 ttcgtgtcgt cctcgcgcga gcgcatcgag caggccaagg ccgactggcg cgccgggcgg
      481 atgaagctgc ccgacctcga caacggcgag ttcatcccgt tgccgggcga tccgccgccg
      541 ccggcgaacg cgatgtcgtg aggcaggccg gggtggttgc gcgagtgcgg cttgcggcga
      601 cacggcaggg cgcggagggc gaacaaccga ccgccggccg cgggcgttcg cgtaccatcc
      661 gccgacgctt tcgccggttc gccgcttgac ccccgtccac gatcccgccg cgcgccgcgc
      721 gcaccagttg ctgccggcct tcctcgccac ctgcatgtcg gccttcgtcg ccgcggtggt
      781 gaccgcgatc aataccggcg tcgatcccgg cctggccgcg cgctggtggc atgcgtggct
      841 gcgtgcgtgg ccgtgcgcgg tggcggcggc ctatctgttc cgtccgctcg ccggctgggc
      901 cgcgttgcgg gtcgcgcgct ggagcatgcg cgtggcgcga ctcgtcgacg gcgcgtagcc
      961 gcacggcggg cgccgcctcc ggtgccgtga tcgcgggcag gccttcacga cgcgctggcg
     1021 gcacgccggc tccaatgcgc ggcgatgcgc cgcccgtcca tcctcctcgc cggcctgctc
     1081 gccctcgcca ccgcggcgcc ggcgcccgca cgcaccgtgt acgaatgcct ccgcgacggc
     1141 acgctgagcc tggccacggt gccggagccg ggttcgcgct gcgtggcgaa acaggcgcgc
     1201 gccaaccggc gccagcccaa ctactggggc agcctcggcc cggtccgcgg gccgatgtac
     1261 cggcgggtca ccgggggcgc gaccgcgtac agcacgcggg ccatgccggg ctggagcgag
     1321 gtgcagtcgg tggtcgcgct gagcgtgccc gccgacctgc cggcgcatgc cggcctgggc
     1381 cggctcggca cgccgcggct ggacgcgtac gcggcgcagt tccgcgcggc ggcccggcgc
     1441 agcggcgtgg aggatgcgtg gctgcgcgcg atcgcgcacg ccgagagcgg cttcgatccg
     1501 ggcgcgcgct cgccccgggg cgcgcagggc ctgatgcagc tgatgccgga agtggcgcgt
     1561 gcctacggcg tcgccgaccc gtattccccc acgcagtcga tcgacggcgc ggcgcgccac
     1621 ctgcacggct tgatgcgccg ctacaacggc gacctggcgc tggtcgcggc cgcctacaac
     1681 gccggcaccg gcgcggtcgc ccgctatcgc ggcgtgcccc cgtacgcgga gacgcaggcc
     1741 tacgtcggca aggtgcaggc gctgtacgcg cgctaccgca gcgcgctgcg acaggcgcgc
     1801 acgtccggat cctgagtcag ccgacccgcc gccgcagcag cgggagggcc gggaactgca
     1861 gggtcatgcg cgcgccttcc accagccccc agcggatgcc gatccggcgc agccgcgcct
     1921 gcatctcgcc gcgctcggcc ggtggggtgc gcgcgagcag cgcgtcgtgg cgttcggccc
     1981 aggcgccggc gaaggcgaac atgccgccgg gctgctgcag ctgcagctgc ggcatcgcct
     2041 gttcgagggc atcgaggtcg gcttcgagtt cgggcgacag cgggcgggtg gcgctcatgg
     2101 cgtgcggcct tgtcgtcggg tccggcgcaa gggtgccgca gcggtgtgta ggccgcgtga
     2161 cggcggacag gggcgggacc gggcggccag gcgcgccggc gcggcgccgg cgtagcatgc
     2221 gccgttcccc accacggagt tccccatgtc gctgtccatg taccaggcct cggtcccggt
     2281 gttcgtccgc gcgctcggca acctgaagca cgtgctgc
//
LOCUS       DATIQC010000155         2648 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_504824, whole genome shotgun sequence.
ACCESSION   DATIQC010000155 DATIQC010000000
VERSION     DATIQC010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2648
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504824"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1773)
                     /locus_tag="VLM17_03300"
     CDS             complement(<1..1773)
                     /locus_tag="VLM17_03300"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64617.1"
                     /translation="MNPLRASLQWLRRRLANRPDSEHAQNFVRLAITSMFCAYLGWRV
                     FHGESGSAFGITWTILLGELTVAFGLLALQLHSPGVSHLRRWIGMLADYGAIGAIMCL
                     EGEQVSPLYSVYLWVTVGNGMRYGHRYLRIATALATLSFLCVTRISPYWLGNPFLSWG
                     LLLGLAAVPLYFDSLLHALTRAMDDARRANEAKSRFLAHMSHEFRTPLNGIIGMTEVL
                     ASTRLDREQRESAEIIQSSAQALLLLVNDVLDISAIEAGKLRMQVQDFDLPAVLERAR
                     RMVSQQAQARQLDLRSEFDLALPRGVRGDPQQLLQVLLNLLSNAIKFTRAGYVLLKAE
                     QAGREGDTVRVRFSVTDTGIGIPPEARDRIFHAFEQVDSGRDRRFGGSGLGVTIAQTL
                     TELMGGSIGVEDNPGGGTRFWIELPLVATPEEQRPAPQEGTEATAKVIAFDDPFVRHR
                     VRTPSLTVLVADDQEANRTVLRRLLERAGHRVAFAEDGEQALDRLVAESFDAIFLDLH
                     MPGMSGFDVIRQARVMEAGRARTPIIVLSADATVEARREAGHAGAFAFLTKPVVVPQL
                     LDTLARAADGGGAAAQADAAAGTMS"
     gene            complement(1770..>2648)
                     /locus_tag="VLM17_03305"
     CDS             complement(1770..>2648)
                     /locus_tag="VLM17_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing phosphohydrolase"
                     /protein_id="HSR64618.1"
                     /translation="GLEFARRFRRPLMHRDVPIVLVTVVGDEPVRQAALDAGVIDFLV
                     KPVRPREMRSRCRNLLQLRQQSESVKQRALSLEQRLLSSMHEVEERERETLSRLARAI
                     EYRDAGTSAYLERMARIAALIAEELGMFEDEVRLIEVAAPLHDLGKIAIPDAVLMKPG
                     PLEHHEVRTMRRHPLIGHELLSSSQNRFIQTAAVIALRHHERYDGSGYPDGLAGDAIP
                     IEARIVAVADVLDALLSPRPYKDAWLLDEALDHLREESGRHFDPRCVEALLRGRARLE
                     EICARYASASTRPGLE"
BASE COUNT          384 a          932 c          952 g          380 t
ORIGIN      
        1 ggacatcgtc ccggctgccg cgtccgcctg ggcggccgcg ccgccgccgt ccgcggcacg
       61 cgccagcgtg tcgagcagct ggggaaccac caccggcttg gtcaggaagg cgaacgcgcc
      121 ggcgtgcccg gcctcgcgtc gggcttccac ggtggcgtcg gcggacagca cgatgatcgg
      181 cgtgcgggcg cgcccggcct ccatcacccg cgcctgccgg atgacgtcga acccgctcat
      241 ccccggcatg tgcaggtcga ggaagatcgc atcgaaggac tcggccacca gccggtcgag
      301 cgcctgctcg ccgtcctcgg cgaaggcgac gcgatggccg gcgcgctcca gcaggcggcg
      361 cagcacggtg cggttggctt cctggtcgtc ggcgaccagc acggtcagcg acggcgtgcg
      421 cacgcggtgg cgcacgaacg gatcgtcgaa ggcgatgacc ttggcggtcg cctcggtgcc
      481 ttcctgcggt gccgggcgct gttcttccgg cgtcgccacc agcggcagct cgatccagaa
      541 acgggtgccg ccgccggggt tgtcctcgac gccgatgctc ccgcccatca actcggtcag
      601 ggtctgcgcg atggtgacgc ccagcccgct gccgccgaag cggcggtcgc gcccgctgtc
      661 cacctgttcg aaggcgtgga agatccggtc gcgcgcttcg ggcggaatgc cgatgccggt
      721 gtcggtgacc gagaagcgca cccgcacggt gtcgccctcg cgccccgcct gctcggcctt
      781 cagcagcacg taaccggcgc gggtgaactt gatcgcgttg ctcaacaggt tgagcagcac
      841 ctgcagcagc tgctgcgggt cgccgcgcac gccgcgcggc agggccaggt cgaactcgct
      901 gcgaagatcc agctgccggg cctgcgcctg ctgggacacc atgcgccggg cgcgctcgag
      961 caccgccggc aggtcgaagt cctgcacctg catgcgcagc ttgccggcct cgatcgcgga
     1021 gatgtcgagt acgtcgttga ccagcagcag cagcgcctgg gccgagctct ggatgatttc
     1081 ggccgactcg cgctgctcgc gatccagtcg cgtgctcgcc agcacctcgg tcatcccgat
     1141 gatgccgttg agcggcgtgc ggaactcgtg gctcatgtgc gcgaggaagc ggctcttggc
     1201 ttcgttcgcg cggcgcgcgt cgtccatcgc gcgggtcagc gcgtgcagca gcgaatcgaa
     1261 gtacagcggc accgccgcca gcccgagcag caggccccag gacaggaacg ggttgccgag
     1321 ccagtacggc gagatgcggg tgacgcacag gaacgacagc gtggccagcg cggtggcgat
     1381 gcgcaggtag cggtggccgt agcgcatgcc gttgccgacg gtgacccaca ggtacaccga
     1441 gtacaggggc gaaacctgct cgccttccag gcacatgatc gcgccgatcg cgccgtagtc
     1501 ggcgagcatg ccgatccagc gccgcaggtg cgacacgccc ggggagtgca gctgcagggc
     1561 gagcaggccg aaggcgaccg tcagctcgcc gagcaggatg gtccaggtga tgccgaaggc
     1621 gctgccgctt tcgccatgga acacgcgcca gccgaggtag gcgcagaaca tcgacgtgat
     1681 cgccagccgc acgaagttct gcgcatgctc gctgtccggc cggttggcga gccgccggcg
     1741 cagccactgc aggctggcgc gcagcggatt cactcgaggc ccggcctcgt gctggcggag
     1801 gcgtagcggg cgcagatctc ctcgagccgc gcgcgcccgc gcagcagcgc ctccacgcaa
     1861 cgcggatcga aatgcctgcc gctctcttcc cggaggtggt cgagcgcctc gtcgagcagc
     1921 caggcgtcct tgtagggccg cggcgacagc agcgcgtcga gcacgtcggc gacggcgacg
     1981 atgcgcgcct cgatcgggat cgcgtcgccg gcgaggccat cgggatagcc gctgccgtcg
     2041 tagcgctcgt ggtggcgcag cgcgatcacc gcggcggtct ggatgaaccg gttctggctg
     2101 ctgctgagca gttcgtggcc gatcagcgga tggcggcgca tggtgcgcac ctcgtggtgc
     2161 tccagcgggc ccggcttcat cagcacggcg tcggggatcg cgatcttgcc gaggtcgtgc
     2221 agcggcgcgg cgacctcgat caggcgcacc tcgtcctcga acatgccgag ttcctcggcg
     2281 atcagcgccg cgatgcgggc catgcgctcg aggtaggcac tggtgccggc atcacggtac
     2341 tcgatcgcgc gggccaggcg cgacagcgtc tcgcgctcgc gctcctcgac ctcgtgcatg
     2401 ctcgacagca gccgctgctc cagcgacagc gcgcgctgct tcaccgattc gctctgctgg
     2461 cgcagctgca gcaggttgcg gcagcgcgag cgcatttcgc gcgggcgcac cggcttgacc
     2521 aggaagtcga tcacgccggc gtccagcgcc gcctgccgga ccggctcgtc gccgaccacc
     2581 gtcaccagca cgatcggcac gtcgcggtgc atcagcgggc gacggaaccg gcgcgcgaat
     2641 tccagccc
//
LOCUS       DATIQC010000156         3479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_328607, whole genome shotgun sequence.
ACCESSION   DATIQC010000156 DATIQC010000000
VERSION     DATIQC010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328607"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1280
                     /gene="secD"
                     /locus_tag="VLM17_03310"
     CDS             <1..1280
                     /gene="secD"
                     /locus_tag="VLM17_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HSR64619.1"
                     /translation="NLQADTQGNVITVRVPDKELQQITADAIEQNVGTLRNRINELGV
                     AEPIIQRQGNDRVVVELPGVQDTAQAKRILGATATLEYRGVVEGNAYDAVASGNVPPE
                     ARVYYRKETGPDGKPIPILLNKRVIASGDQLVDARSGYDSRSGSPMVSVRLNGIGGER
                     MFDYTSQNVGKPMAVVYIERVPEVRKGPDGKEVRTTRINEQVISVATIQGVFGKEFQT
                     TGLNSAKESADLALLLRAGALAAQMDFAEERIIGPSLGAENIQRGLEAVGYSFLFALV
                     FFLIYYRMFGVITCLALLLNLLAVLAILSVMGATMTLPGLAGIALTVGMSVDANVLIN
                     ERIREDLRLGMHPLTAIAEGYKRAKGTIYDANITTLLAGVALFAFGTGPLKGFAVTLI
                     VGILTSMYTAVSVSRGIATLIYGRRRKLQSIAI"
     gene            1291..2277
                     /gene="secF"
                     /locus_tag="VLM17_03315"
     CDS             1291..2277
                     /gene="secF"
                     /locus_tag="VLM17_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012438079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HSR64620.1"
                     /translation="MKPFNLFPYGSNIHFMRLRWVSLGIAALLMFGSLGSMLYNTFST
                     GHFNGAGTFNYALDFTGGVGVELRYARAPDVDQVRQSLEKAGFQHAVVQTFGTSSDLL
                     VRLQTKQAQANQDATSSIGDSVAQAASLPGNPAVKRSSAAISAQVGQELALNGFYALV
                     FVMVGFLIYISFRFELKFAIAAIIATLHDVSIVCGWFAITGHEFNLNVLAGVLAVMGF
                     SINDTIVVFDRVRENFRGMRAAPEEVMNASVNQTLSRTIITSFVAFLSMLALYLFGGE
                     SLRGLAEAQIIGVVIGTLSSIFVACPLLLWLNVTKQDLMPKARDDAALARRP"
     gene            complement(2369..3199)
                     /locus_tag="VLM17_03320"
     CDS             complement(2369..3199)
                     /locus_tag="VLM17_03320"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HSR64621.1"
                     /translation="MQKPAVNVMVKAARAGGNVLLRNMHRIDALNVVEKQRMDYASEV
                     DGLAEAEIVKELRRANPEYAVLGEEGGAKKGNRGASRYTWVIDPLDGTSNYLHGIPHW
                     CVSIALLEGGEPIHGVVFDPLRNELFTASRGSGAQLNERRIRIGERSELTGAMLITGF
                     PPRERARAPQQLDCLRELLVQAEDVRRTGSAALDLAWTACGRADAYFEAGLQPWDIAA
                     GVLLVREAGGRVCDYRGANLTKLDTADARGRQVVAGNVKVSEALQKMVVSSGYAASFS
                     "
     gene            3308..>3479
                     /locus_tag="VLM17_03325"
     CDS             3308..>3479
                     /locus_tag="VLM17_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HSR64622.1"
                     /translation="MPPQKACPNAPARIRIVLVGTQHPGNIGSAARAMKTMGLSRLAL
                     VAPERYPHPEAAA"
BASE COUNT          533 a         1218 c         1180 g          548 t
ORIGIN      
        1 ccaacctgca ggccgacacc cagggcaacg tgatcacggt gcgcgtgccc gacaaggagc
       61 tgcagcagat caccgccgat gcgatcgagc agaacgtcgg caccctgcgc aaccgcatca
      121 acgagctcgg cgtggccgag ccgatcatcc agcgccaggg caacgaccgg gtcgtggtcg
      181 agctgccggg cgtgcaggac accgcgcagg ccaagcgcat cctcggcgcc accgcgaccc
      241 tcgaataccg cggcgtggtc gaaggcaacg cctacgacgc ggtcgccagc ggcaacgtgc
      301 cgcccgaggc gcgcgtgtac taccgcaagg aaaccggccc ggacggcaag cccatcccga
      361 tcctgctgaa caagcgcgtg atcgcctccg gcgaccagct ggtcgatgcg cgctccggct
      421 acgactcgcg cagcggcagc ccgatggtgt cggtgcgcct gaacggcatc ggcggcgagc
      481 gcatgttcga ctacaccagc cagaacgtcg gcaagccgat ggcggtggtg tacatcgagc
      541 gcgtgcccga ggtgcgcaag gggccggacg gcaaggaagt ccgaaccacc cgcatcaacg
      601 agcaggtgat ctcggtcgcg accatccagg gcgtgttcgg caaggagttc cagaccaccg
      661 gcctgaacag cgccaaggaa tcggccgacc tcgcgctgct gctgcgcgcc ggcgcgctgg
      721 ccgcgcagat ggacttcgcc gaggagcgca tcatcggccc gagcctcggc gcggagaaca
      781 tccagcgcgg cctcgaggcg gtcggctact cgttcctgtt cgcgctggtg ttcttcctga
      841 tctactaccg catgttcggc gtcatcacct gcctggcgct gttgctgaac ctgctggccg
      901 tgctcgcgat cctgtcggtg atgggcgcga cgatgacctt gccgggcctc gccggcatcg
      961 cgctcaccgt cggcatgtcg gtggacgcca acgtgctgat caacgaacgc atccgcgaag
     1021 acctgcgcct gggcatgcat ccgctgaccg cgatcgcgga aggctacaag cgcgccaagg
     1081 gcaccatcta cgacgccaac atcaccacgc tgctggccgg cgtggcgctg ttcgcgttcg
     1141 gtaccggccc gctgaagggt ttcgccgtga cgctcatcgt cggcatcctg acctcgatgt
     1201 acaccgcggt gtcggtgtcg cgcggcatcg ccacgctcat ctacggccgc cgccgcaagc
     1261 tgcagtcgat cgcgatctga gggaacccac atgaagcctt tcaacctgtt cccgtacggc
     1321 agcaacatcc acttcatgcg cctgcgctgg gtgtcgctgg gcatcgccgc gctgctgatg
     1381 ttcggctcgc tcggttcgat gctctacaac accttctcga ccggccactt caacggcgcc
     1441 ggcaccttca actacgcgct ggacttcacc ggcggcgtcg gcgtcgaact gcgctacgcc
     1501 agggcgccgg acgtcgacca ggtccgccag agcctggaga aggcgggctt ccagcacgcg
     1561 gtggtgcaga ccttcggcac ttccagcgac ctgctggtgc gcctgcagac gaagcaggcg
     1621 caggcgaacc aggacgcgac cagcagcatc ggcgattcgg tcgcgcaggc cgcctcgctg
     1681 cccggcaacc cggcggtgaa gcgcagcagc gcggcgatca gcgcgcaggt cggccaggag
     1741 ctggcgctga acggcttcta cgcgctggtg ttcgtgatgg tcggcttcct gatctacatc
     1801 tcgttccggt tcgagctgaa gttcgcgatc gcggcgatca tcgcgacgct gcacgacgtc
     1861 agcatcgtct gcggctggtt cgcgatcacc ggccacgagt tcaacctcaa cgtgctggcc
     1921 ggcgtgctgg cggtgatggg gttctcgatc aacgacacca tcgtcgtgtt cgaccgcgtc
     1981 cgcgagaact tccgcggcat gcgcgcggcg ccggaagagg tgatgaacgc ttcggtcaac
     2041 cagaccctgt cgcggacgat catcacctcg ttcgtcgcct tcctcagcat gctggcgctg
     2101 tacctgttcg gcggcgagtc gctgcgcggc ctggccgagg cgcagatcat cggcgtggtg
     2161 atcggcaccc tgtcgtcgat cttcgtcgcc tgcccgctgc tgctgtggct gaacgtgacc
     2221 aagcaggacc tgatgccgaa ggcgcgcgac gacgcggcgc tggcgcggcg gccgtgagcc
     2281 gcgtcgcctg acggaaaagg ccgcgcatcg cgcggccttt ttttacgccc gcagccggcc
     2341 cggcctgcgc tcgggaacgc gatcccgctc agctgaagct ggcggcgtag cccgagctga
     2401 ccaccatctt ctgcagcgcc tcgctgacct tgacgttgcc ggcgaccacc tggcgcccgc
     2461 gcgcgtcggc ggtgtcgagc ttggtgaggt tcgcgccgcg gtagtcgcac acgcggccac
     2521 cggcctcgcg caccagcagc acgcccgcgg cgatgtccca tggctgcagt ccggcctcga
     2581 aataggcgtc ggcgcggccg caggcggtcc aggcgaggtc gagcgcggcc gaacccgtgc
     2641 ggcgcacgtc ttcggcctgc accagcagtt cgcgcaggca gtccagctgc tgcggcgcgc
     2701 gggcgcgctc gcgcggcggg aagccggtga tcagcatcgc gcccgtcagt tcgctgcgct
     2761 cgccgatgcg gatgcggcgc tcgttgagct gcgcgccact gccgcggctg gcggtgaaca
     2821 gctcgttgcg cagcgggtcg aacaccacgc cgtggatcgg ctcgccgcct tccagcagcg
     2881 cgatcgagac gcaccagtgc gggatgccat gcaggtagtt gctggtgccg tcgagcgggt
     2941 cgatgaccca ggtgtagcga ctggcaccgc ggttgccctt cttcgcgccg ccctcctcgc
     3001 cgagcaccgc gtactcggga ttggcccggc gcagttcctt gacgatctcc gcctcggcca
     3061 gcccgtcgac ttcgctggcg tagtccatgc gctgcttctc gaccacgttc agcgcgtcga
     3121 tgcggtgcat gttccgcagc agcacgttgc cgccggcccg ggctgccttg accatgacgt
     3181 tgacggcggg tttctgcatg gcgacggacc tcggtacagg cggcgggggg cgggcggagg
     3241 gaaagagcgt gccggcgcgg ggccgggacg cgcagtttac cattcgcgca tgagcgccga
     3301 atccacgatg cctccgcaaa aggcctgccc caacgcgccc gcgcgcatcc ggatcgtgct
     3361 ggtcggcacg cagcaccccg gcaacatcgg ctcggcggcg cgggcgatga agacgatggg
     3421 gctgtcgcgg ctggcgctgg tcgcgccgga gcgctacccg catcccgagg ccgcggcgc
//
LOCUS       DATIQC010000157         1732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_151733, whole genome shotgun sequence.
ACCESSION   DATIQC010000157 DATIQC010000000
VERSION     DATIQC010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151733"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..1000)
                     /gene="ccsA"
                     /locus_tag="VLM17_03330"
     CDS             complement(194..1000)
                     /gene="ccsA"
                     /locus_tag="VLM17_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HSR64623.1"
                     /translation="MPFALVALASYLLATALLVRSLAAGSEGPRGWIAPAGIALLFHA
                     GFHVAAWHEAAGLDLHFFAALSLVGLGMATLTTIVGANGRLAALGGVVFPLAAASLLG
                     YLLYGHVRAEGLDWRLQLHAWCALLAYATLAIAALLAIMLWIQERALRQRQVQGWRRA
                     LPPLRELETLLFRTIAVGFALLTATLLTGALFVQDLLEQHLAQKTVLSVLSWLAFGGL
                     LLGRWRFGWRGQTAVRWTLSAMALLLLAFFGSKFVLELVLHRAMVPTATP"
     gene            1102..>1732
                     /locus_tag="VLM17_03335"
     CDS             1102..>1732
                     /locus_tag="VLM17_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011407905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HSR64624.1"
                     /translation="MFESLTQRLSGTIERLRGRGRLTEENIRESLREVRIALLEADVA
                     LPVVQALVERIKVRAVGQEVLKSLTPGQALIKVVRDELTTVMGAAAADLNLNVPAPAV
                     VLMAGLQGAGKTTTVAKLAKHLKERRKKKVMVVSADVYRPAAIEQLKTLAQQVDVLFH
                     PSDAGQKPEAIVRAAIDDARKSFADVLIVDTAGRTSIDEAMMAEIKALHA"
BASE COUNT          299 a          598 c          631 g          204 t
ORIGIN      
        1 ggcccacatg gcgtcgcgga cctggcggaa cagcaggccg agggtcgagc cgttgcaggt
       61 accggggggg aggggcgtgc tcatggggcg cgcatgatgc ccgcctccgc aatagttgtc
      121 aatgcaatta ttgtgaaggc aatgagcgcg gcgaccctgg ccgcaaccag gcggatcagg
      181 ggcgatgcgg ggctcagggc gtagcggtgg gcaccatggc ccggtgcagc accagttcca
      241 gcacgaactt gctgccgaag aacgccagca gcagcagcgc catggccgac agggtccagc
      301 gcaccgcggt ctggccccgc cagccgaagc gccagcgccc gagcagcagc ccgccgaagg
      361 ccagccagga cagcacgctc agcacggtct tctgcgccag gtgctgttcg aggaggtcct
      421 ggacgaacag cgcgccggtc agcagggtcg ccgtgagcag cgcgaagccg acggcgatcg
      481 tgcggaacag cagggtttcc agctcccgca gcggcggcag ggcgcgccgc cagccctgga
      541 cctggcgctg gcgcagcgcg cgttcctgga tccagagcat gatcgccagc agcgcggcga
      601 tcgccagcgt cgcgtaggcg agcagcgcgc accaggcatg cagctgcagc cgccagtcga
      661 ggccttcggc gcgcacgtgg ccgtacagga ggtaacccag cagcgaggcc gcggcgagcg
      721 ggaacaccac cccgcccagc gccgccagcc gcccgttcgc gccgacgatc gtggtcagcg
      781 tcgccatgcc caggcccacc agcgacagcg cggcgaagaa gtgcaggtcc agccccgccg
      841 cctcgtgcca ggcggcgacg tggaagccgg catggaacag cagcgcgatc ccggcgggcg
      901 cgatccagcc gcgcgggcct tcgctgccgg ccgcgaggga gcgcaccagc agcgcggtgg
      961 caaggaggta ggaggcgagg gcgacgaggg cgaagggcat cgcgcgagtg tcgcatagcg
     1021 cgcgggccgc acggaccgcg ttcaagggcg atgcgagcgc gcgggctata atccgcgccc
     1081 gtttttcccg gcttcccgcc catgttcgaa tccctcaccc agcgcctgtc cggcaccatc
     1141 gagcgcctgc gcggccgcgg ccgcctgacc gaggagaaca tccgcgagtc gctgcgcgag
     1201 gtgcgtatcg cgctgctcga ggccgacgtc gcgctgccgg tggtgcaggc gctggtcgag
     1261 cgcatcaagg tgcgcgcggt cggccaggag gtgctgaagt ccctgacgcc cggacaggcg
     1321 ctgatcaagg tcgtacgcga cgagctcacg acggtgatgg gcgcggccgc cgccgacctc
     1381 aacctcaacg tgcccgcgcc cgccgtcgtg ctgatggccg gcctccaggg cgcgggcaag
     1441 accaccaccg tcgccaagct ggcgaagcac ctgaaggagc ggcgcaagaa gaaggtgatg
     1501 gtggtgtcgg ccgacgtcta tcgtccggcc gcgatcgagc agctgaagac gctcgcgcag
     1561 caggtcgacg tgctgttcca tccatcggac gccggccaga agcccgaagc catcgtccgt
     1621 gccgcgatcg acgacgcacg caagtccttc gccgatgtgc tcatcgtcga caccgcgggc
     1681 cgcacctcga tcgacgaagc gatgatggcg gagatcaagg cgctgcacgc cg
//
LOCUS       DATIQC010000158         3337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_151888, whole genome shotgun sequence.
ACCESSION   DATIQC010000158 DATIQC010000000
VERSION     DATIQC010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151888"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..526
                     /locus_tag="VLM17_03340"
     CDS             38..526
                     /locus_tag="VLM17_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64625.1"
                     /translation="MKILSRLMLIACLVLPFAGCKKEEAPQAAATPPMAAPQNDDMNA
                     WRNYLQDIVPRYMGAGTSQPYVYLLPGESTADFNDVYTRLAQKAKEDLGRGIVSGNLL
                     AFASPASAKCADMVVDAFKDVPAGSMKGVKVLFIGKAADNDRVKAAVAPAGVDYTFVE
                     TK"
     gene            663..920
                     /locus_tag="VLM17_03345"
     CDS             663..920
                     /locus_tag="VLM17_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HSR64626.1"
                     /translation="MSLRITELCVNCDVCEPVCPNKAISQGETIYVIDPARCTECVGH
                     HEEPQCVVVCPVECIEPDPEHPEGEEELLAKLMRLQAQAPA"
     gene            959..2629
                     /gene="ggt"
                     /locus_tag="VLM17_03350"
     CDS             959..2629
                     /gene="ggt"
                     /locus_tag="VLM17_03350"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HSR64627.1"
                     /translation="MLWLLLALPAFAQAPAQAAHPPGAAIASGHALATGAGLEVLREG
                     GNAFDAAVAVSSTLSVVEPISSGLGGGGFFLLHDAKNGQDIFLDARETAPQAAKPAAY
                     LDQHGALDPDRAQNGPWSAGIPGLPAALVELARKYGRLPLAKTLAPAIRIAREGFPVY
                     DRLEKGYASRRPVMERYPGTRAVFLADGTPPRTGEVLRQPDLARTLELIATRGRDGFY
                     AGEVARRLIAGVQAAGGHWTPGELAGYQVKYRTPLHLRYHDWNITTAPPPSSGGIALA
                     EILQVAGGWDLRRLDDAHRVHILAEAMRRAYRDRTIWLGDPDFVKVPVARLMSPDYAA
                     GLRATIHPDRATPSALLSGQPAPLEDDETTHFAIIDRDGNRVSATQTVNLLYGSGLVP
                     PGTGVLLNDEMDDFALKPGTPNAFGVMGFDANAPKPGKRMLSSMTPTFMESPDKVVAL
                     GAPGGSRIITEVLLGILGYDDGLSARQVAALPRFHHQWLPDVISAEPGALSPATVAAL
                     QAMGHAVNAGEPTWGNLQTVEWDKRHDTLEGGSDPRHPEGKADVLPQP"
     gene            2642..3211
                     /locus_tag="VLM17_03355"
     CDS             2642..3211
                     /locus_tag="VLM17_03355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64628.1"
                     /translation="MADNDRKPPLQHVPALLTGTAALIAALTGVYVNLRDTREAPVAG
                     AGAKPAVHAAAPVASAVPAALRVQVERIAVEHDGTPGTTDWRFTVEADGEPLFAFTQD
                     ALDDSGGRNVVAPTDAQGLLRVAAGKRVRLTVQGWRASLLGYGASPLASGEGTLAGSG
                     ALAPIRVQAAKPADGAFVFHLSAEPARGQ"
BASE COUNT          502 a         1222 c         1198 g          415 t
ORIGIN      
        1 gggtgcgcgc tcacaaccac ctttccgggg aaccgcaatg aagatcctgt cccgcctgat
       61 gctgatcgcc tgcctcgtgc tgccgttcgc cggctgcaag aaggaggaag cgccgcaggc
      121 cgcggccacg ccgccgatgg ccgcgccgca gaacgatgac atgaacgcct ggcgcaacta
      181 cctgcaggac atcgtcccgc gctacatggg cgccggcacc agccagccct acgtgtacct
      241 gctgccgggc gagagcacgg ccgatttcaa cgacgtctac acgcgcctgg cgcagaaagc
      301 gaaggaagac ctcggccgcg gcatcgtctc cggcaacctg ctggccttcg cgtcgccggc
      361 gtcggcgaag tgcgcggaca tggtggtcga cgcgttcaag gacgtgccgg ccggctcgat
      421 gaagggggtc aaggtgctct tcatcggcaa ggccgcggac aacgaccggg tcaaggcggc
      481 ggtggcgccg gcgggcgtgg actacacgtt cgtcgaaacg aagtaagccg cctccaggcg
      541 gtccggagac gccggcgcga tgccggcgtc tccgtttccg gcaccggtac ccggcgcgcg
      601 ccggccgcgg atagtaaaat cgcgctcccg cctgcaggcg gcaagccgcc ggcacccgac
      661 gaatgtcgct gcgaatcacc gaactctgcg tcaactgcga cgtctgcgag ccggtctgcc
      721 cgaacaaggc gatcagccag ggcgagacca tctacgtgat cgatcccgcg cgctgcaccg
      781 agtgcgtcgg ccaccatgag gagccgcaat gcgtcgtcgt ctgccccgtg gagtgcatcg
      841 agccggaccc cgagcatccg gaaggcgagg aggagctgct ggccaagctg atgcggctgc
      901 aggcgcaggc gccggcctga tcggagcgcg cctggtccgc ggcgtcgcca cggcctgcgt
      961 gctgtggctg ctgctcgcgc tgcccgcgtt cgcgcaggcc ccggcgcagg ccgcgcatcc
     1021 acccggcgcc gccatcgcca gcggccatgc gctcgcgacc ggggccgggc tggaggtgct
     1081 gcgcgaaggc ggcaacgcct tcgacgccgc ggtggccgtg tcgtccacgc tgtcggtggt
     1141 cgaaccgatc agctcgggcc tcggcggcgg cggcttcttc ctgctgcacg acgcgaagaa
     1201 cgggcaggac atcttcctcg acgcgcgcga gaccgcgccc caggcggcca agccggcggc
     1261 gtacctggac cagcacggcg cgctcgatcc cgaccgcgct cagaacggtc cgtggtcggc
     1321 cggcatcccc ggcctgccgg ccgcgctggt cgaactcgcg cgcaagtacg gccgactgcc
     1381 gctggcgaag acgctggcac cggcgatccg catcgcccgc gaggggttcc ccgtctacga
     1441 ccggctggag aagggctacg cgagccggcg cccggtgatg gagcgctatc ccgggacccg
     1501 cgcggtgttc ctggccgacg gcacgccgcc caggacgggc gaagtgctcc ggcagccgga
     1561 cctcgcgcgg acgctggaac tcatcgccac gcgcggccgc gacggcttct atgcgggcga
     1621 ggtcgcgcgc aggctgatcg ccggcgtgca ggccgcgggc ggccactgga cgcccgggga
     1681 actggccggc taccaggtga agtaccgcac gccgctgcac ctgcgttacc acgactggaa
     1741 catcaccacc gcgccgccgc cgtcctcggg cggcatcgcg ctggccgaaa tcctgcaggt
     1801 cgccggaggc tgggacctgc gcaggctgga cgacgcgcat cgcgtgcaca tcctcgcgga
     1861 ggcgatgcgc cgcgcctacc gcgaccgcac catctggctg ggcgacccgg acttcgtgaa
     1921 ggtgccggtc gcgcggctga tgagccccga ctacgccgcc ggcctgcgcg ccacgatcca
     1981 tccggacagg gcgaccccga gcgcgctgct gtcgggccag ccggcgccgc tggaggacga
     2041 cgagaccacc cacttcgcga tcatcgaccg cgacggcaac cgcgtgtcgg cgacgcagac
     2101 ggtcaacctg ctgtacggct cggggctggt gccgccgggt accggcgtgc tgctcaacga
     2161 cgagatggac gacttcgcgc tcaagccggg cacgccgaac gccttcggcg tgatgggctt
     2221 cgatgcgaac gcgccgaagc ccggcaagcg catgctcagc tcgatgacgc cgaccttcat
     2281 ggaatcgccg gacaaggtgg tcgcgctcgg cgcgccgggt ggcagccgca tcatcaccga
     2341 ggtgctgctc gggatcctcg gttacgacga cggcctgtcc gcgcggcagg tcgccgcgct
     2401 gccgcgcttc caccaccagt ggctgccgga cgtcatttcc gcggagccgg gcgcgttgtc
     2461 gcccgccacc gtcgccgcgc tgcaggcgat gggccacgcg gtgaacgcgg gcgagccgac
     2521 gtggggcaac ctgcagacgg tggaatggga caagcggcat gacacgctgg agggcggcag
     2581 cgatccgcgc cacccggaag gcaaggccga cgtgctcccg caaccctgac gccgaaccgc
     2641 catggccgac aacgacagga agccgccgct gcagcacgtg cccgcgctgc tcaccggcac
     2701 cgcagcgctg atcgccgcgc tcaccggcgt gtacgtgaac ctgcgcgaca cccgcgaggc
     2761 cccggttgcg ggcgccggcg cgaaaccggc ggtgcatgcc gcggcccccg tggccagcgc
     2821 cgttcccgcc gcgctgcgcg tgcaggtcga acgcatcgcg gtcgagcacg acggcacgcc
     2881 cggcaccacc gactggcgct tcaccgtgga ggccgacggg gagccgctct tcgccttcac
     2941 ccaggatgcg ctcgacgaca gcggcggccg caacgtggtc gcgccgacgg acgcccaggg
     3001 cctgctgcgg gtggccgccg gcaagcgcgt gcggctgacg gtgcagggct ggcgcgccag
     3061 cctgctcggc tacggcgcca gcccgctcgc cagcggcgag ggcacgctgg ccggcagcgg
     3121 tgcgctggcg ccgatccgcg tgcaggccgc gaagccggcc gacggcgcat tcgtcttcca
     3181 cctctccgcg gagccggcac gcgggcaata agcggcgcgg gacggcacgc ggcgccggcg
     3241 ctagaatcgc cgcatgaagc tctggtcgat cctcggcaac tcgcagaagc tcgacggcgg
     3301 cgcgatgttc ggcaacgcgc cgcgcgcgat gtgggcc
//
LOCUS       DATIQC010000159         2064 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_258481, whole genome shotgun sequence.
ACCESSION   DATIQC010000159 DATIQC010000000
VERSION     DATIQC010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_258481"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VLM17_03360"
     CDS             <1..324
                     /locus_tag="VLM17_03360"
                     /inference="COORDINATES: protein motif:HMM:NF013962.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HSR64629.1"
                     /translation="VRVEGDGHAREIEATLHRGPRVVRFDGVEIEFDPQAHVLLLRNE
                     DRPGIIGTVGSQLGTAGINIANFALGAAGDGQARAAITVDRPLDDAQLATLRATPGVL
                     SLQQV"
     gene            328..972
                     /locus_tag="VLM17_03365"
     CDS             328..972
                     /locus_tag="VLM17_03365"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HSR64630.1"
                     /translation="MRILLARHGETAWNAEGRYQGQEDIPLSAVGEAQARALGERLRE
                     LRIDRAVASPLGRALRTAQLALGESRQPLLTTDAGLMEIAHGAWEGLLAGEIRERDGA
                     RLHAWRHAPHEVLMPGGESLQHVFDRAWPALARAAAGLGADDTLLVVAHDAVNRVLLC
                     HVLGIPLARLWGFRQAPTTLNLLEGPGVEQLEVVRLNDCSHHTPLFGEAVHRAL"
     gene            1040..>2064
                     /gene="folC"
                     /locus_tag="VLM17_03370"
     CDS             1040..>2064
                     /gene="folC"
                     /locus_tag="VLM17_03370"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HSR64631.1"
                     /translation="MPRSLAEWLDYIERQHPKSIALGLERVREVAARMGVQRPATHVI
                     TVGGTNGKGSTVAFIEAIARAAGWKVGAYTSPHLLRYNERVRIDGAEVDDASLVVAFE
                     AVEEARGETPLTYFEYGTLAALWLFQRSALDLAVLEVGLGGRLDAVNLVDPDVAVITT
                     VDLDHQDWLGAEREAIGAEKAGIARAWKPLVLGEDAPPSSVLDRAYLIGASAIRAGCD
                     FFFEPLPRPADDGRPDGWRWREVGCELELPMPRLAAPAQLRNAATAIAALRALDVAPP
                     EPAYAQGVATAFVPGRLQEFERDGTRIVVDVAHNPQAARELANWLGVDPPAGRTHAVF
                     AALGDKDV"
BASE COUNT          277 a          753 c          759 g          275 t
ORIGIN      
        1 gtacgcgtgg agggcgacgg ccatgcacgc gagatcgagg cgaccctgca tcgcgggccg
       61 cgggtggtgc gcttcgacgg cgtggagatc gagttcgatc cgcaggcgca cgtattgctg
      121 ctgcgcaacg aggaccgtcc cggcatcatc ggcacggtcg gttcgcagct gggcaccgcc
      181 ggcatcaaca tcgcgaattt cgcgctgggc gcggccggcg acggccaggc gcgcgcggcc
      241 atcaccgtcg accgcccgct ggacgacgcc cagctcgcca ccctgcgcgc cacgcccggc
      301 gtgctctcgc tgcagcaggt gtaggccatg cgcatcctcc tcgcacgcca cggcgaaacc
      361 gcgtggaacg ccgaaggccg ctaccagggc caggaagaca tcccgctgag cgcagtcggc
      421 gaggcgcagg cccgggcgct cggcgagcgc ctgcgcgaac tgcgcatcga tcgcgccgtc
      481 gcctcgccgc tcggccgcgc gttgcgtacc gcccagctcg cgctcggcga atcgcgccag
      541 ccgctgctca ccaccgatgc cggcctcatg gagatcgcgc acggcgcgtg ggaaggcctg
      601 ctcgcgggcg agatccgcga acgcgacggg gcgcgcctgc acgcctggcg gcacgcgccg
      661 cacgaggtgc tgatgccggg cggcgaatcg ctgcagcacg tattcgaccg cgcgtggccc
      721 gcgctggctc gcgcggcggc ggggctcggc gccgacgaca ccctgctggt ggtggcgcac
      781 gatgcggtca accgcgtgct gctgtgccac gtcctcggca ttccgctggc caggctttgg
      841 ggcttccggc aggcgccgac cacgctcaac ctgctcgagg gtcccggcgt cgaacagctc
      901 gaagtcgtcc gcctcaacga ctgcagccac cacacgccgc tgttcggcga ggcggtgcac
      961 cgggccctgt aggcgtttcc tccccggcgc gtggtgcctg gggagctggc gggcgagggc
     1021 ggcgccctac aatgcgtgca tgccacgatc gctcgccgaa tggctcgact acatcgagcg
     1081 ccagcacccg aaatcgatcg cgctcggcct ggagcgcgtg cgcgaggtcg ccgcgcgcat
     1141 gggggtgcag cggccggcga cgcacgtcat cacggtcggc ggcaccaacg gcaagggctc
     1201 cacggtcgcc ttcatcgagg cgatcgcgcg cgcggccggc tggaaggtcg gcgcgtacac
     1261 ctcgccgcac ctgctgcgct acaacgagcg cgtgcgcatc gacggcgccg aggtcgacga
     1321 tgcctcgctc gtcgtggcct tcgaggcggt ggaagaggcg cgcggcgaaa cgccgctgac
     1381 ctatttcgag tacggcacgc tggccgcgct gtggctgttc cagcgcagcg cgctcgacct
     1441 cgcggtgctg gaggtcggcc tcgggggcag gctcgacgcg gtgaacctcg tcgatccgga
     1501 cgtcgccgtc atcaccaccg tcgacctcga ccaccaggac tggctcggcg cggagcgcga
     1561 ggcgatcggg gccgagaagg ccgggatcgc gcgcgcctgg aagccgctgg tgctcggcga
     1621 ggacgcgccg ccgtcgagcg tgctcgatcg cgcctacctg atcggcgcgt cggcgatccg
     1681 ggccggttgc gacttcttct tcgagccgct gcctcgaccg gccgacgatg gccggccgga
     1741 cggttggcgc tggcgcgagg tcggctgcga gctcgaactg ccgatgccgc gcctggccgc
     1801 gccggcgcag ttgcgcaacg cggccaccgc gatcgccgcg ctgcgcgcgc tcgacgtggc
     1861 gccgccggaa ccggcgtacg cgcagggcgt ggcgacggcc ttcgtgcccg gccgcctgca
     1921 ggaattcgag cgcgacggga cccggatcgt cgtcgacgtc gcccacaacc cgcaggccgc
     1981 gcgagaactc gccaactggc ttggcgtcga tccgccggcc gggcgtacgc acgcggtgtt
     2041 cgccgcgctc ggcgacaagg acgt
//
LOCUS       DATIQC010000160         4426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_46295, whole genome shotgun sequence.
ACCESSION   DATIQC010000160 DATIQC010000000
VERSION     DATIQC010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4426
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46295"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1750)
                     /gene="uvrC"
                     /locus_tag="VLM17_03375"
     CDS             complement(<1..1750)
                     /gene="uvrC"
                     /locus_tag="VLM17_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009593726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HSR64632.1"
                     /translation="MTAGPDAAPPFDGKAFARGLGVTPGVYRMYAADNGVLYVGKARE
                     LKKRVASYFNATPKPARTMAMLAQVARMEVTVTRTEAEALLLENQLIKSLKPRYNVML
                     RDDKSYPYVLLTQERWPRLALHRGARAIPGRYFGPYPSVGAVRETLNLMHRLFRLRSC
                     EDSVFRNRSRPCLQYQIGRCSAPCVGLVPSNDYARAVHQVELFLEGRSDELGRELEQS
                     MAAASERLDFEEAARVRDLIATIRKLQARQYVDGRAADLDVLACAMQGTHACVLLLAF
                     RDGRNLGTRAFFPRTNGADNAEEVLAAFVSQYYAEQPAPREIVLDRDIDERELLQEAL
                     SAAAGKRVLLKANVRGERAGYVDLARRNAELALASELGSQATQQARLASLRELLGLDA
                     LPARIECYDISHTMGEATVASQVVFDGNGPVRGQYRRYNIAGIEPGDDYAAMHQALSR
                     RFRRAVEAPEGQGVLPDVLLIDGGAGQVAQANAVLAELGIGGAITVVGVAKGEARRPG
                     HEALLLPDGREIRPGPESPGLQLVQQVRDEAHRFAITGHRGRRAKARNVSRLEDIPGI
                     GPRRRANLLRHFGGLAG"
     gene            complement(1747..3168)
                     /locus_tag="VLM17_03380"
     CDS             complement(1747..3168)
                     /locus_tag="VLM17_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64633.1"
                     /translation="MDAAIAPELPHTLEWLNLAGSLRLAQLRGRVCLLAFVSAGSAWS
                     RQRLQELARLQARHPARLQVLALHAPRFEHERDPRRAARQLGRQALNFPVAHDRDWTA
                     WQHFGIDAWPTVLLLDGDGRIRGRFVGASGMRDVEARTLALLEDVGETGALASPVLRR
                     LNEPAMPLRHPAGLAVDARYLYIADSGHHRVLECDHPGRVLRQFGSGDPGLIDGAADV
                     AAFQRPQGLCLQRDALYVADSGNHAVRRIDLRSGGVATVLGNGSPGVPAAGAVADARA
                     APLDQPRAVALAGEALLVACCGDNRVWRYHLGRHVLSLAAGSGAMAVRDGAGAEAAFA
                     EPVALAVVQQRVYVCDGAGSAIRMLDERTGQVSTLVGVDAWEHGRADGVRHDARLQDP
                     QAIALDPDAPVLWIADAGNDLLRTLRLGGGELATWSLPQRLHGPGGLAVAAGAVWIAD
                     TDAHAILRLDTRSGALQRVPVGE"
     gene            complement(3217..3981)
                     /gene="kdsB"
                     /locus_tag="VLM17_03385"
     CDS             complement(3217..3981)
                     /gene="kdsB"
                     /locus_tag="VLM17_03385"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006452739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HSR64634.1"
                     /translation="MSPIDFVVAIPARFAASRLPGKPLRLLAGEPLVLHVARRALAAG
                     AREVWVAADDARIAGALAGSGVNIAMTSPAHASGSDRLAECARIAGWHDDTVVVNLQG
                     DEPFAPPAGIRAVAELLRDSGTDMATLATAVEDAEQLFDPHTVKLVRASNGDALYFSR
                     APVPWARDAFEQDRSVLPQGDAWLRHIGIYAYRAGFLQRFTALPPGRLERIESLEQLR
                     VLEAGYRIAVGITPAPFPPGVDTPEDLARAERRLAG"
     gene            complement(4075..>4426)
                     /locus_tag="VLM17_03390"
     CDS             complement(4075..>4426)
                     /locus_tag="VLM17_03390"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HSR64635.1"
                     /translation="AGDARPLAGGRPRPLAAFAGHRVHAVAGIGDPGRFFTMLRGAGI
                     AVVPHAFPDHHAYAAADLRFGSDLPVLMTEKDAVKCGAFAGERAYAVPVRAELPEAFW
                     VALLEKLRAARKAG"
BASE COUNT          577 a         1649 c         1633 g          567 t
ORIGIN      
        1 ggcccgcgag cccgccgaag tgccgcaaca ggttagcgcg ccggcgcggt ccgatgccgg
       61 gaatgtcctc cagccggctg acattgcgcg ccttggcgcg gcgcccgcgg tggccggtga
      121 tcgcgaaacg gtgcgcttcg tcgcgcacct gctgcaccag ctgcaggccc ggcgactcgg
      181 gcccggggcg gatttcgcgc ccgtcgggca gcagcagcgc ctcgtggccg gggcggcggg
      241 cctcgccctt ggccacgccg accaccgtga tcgccccgcc gatgcccagt tcagccagta
      301 ccgcgttggc ctgcgccacc tgcccggcgc cgccgtcgat cagcagcacg tcgggcaaca
      361 cgccctgccc ttcgggcgct tccaccgccc gccggaagcg ccgcgacagc gcctggtgca
      421 tcgccgcgta gtcgtctccc ggctcgatgc cggcgatgtt gtagcgccgg tactgcccgc
      481 gcaccgggcc gttgccgtcg aacaccacct gcgaggcgac cgtcgcctcg cccatcgtgt
      541 ggctgatgtc gtagcactcg atgcgcgccg gcaatgcgtc cagccccagc agttcgcgca
      601 gcgaggccag gcgcgcctgc tgggtcgcct ggctgccgag ttcggacgcg agcgccagct
      661 cggcgttgcg gcgcgcgagg tcgacgtagc cggcccgttc gccgcgcacg ttcgccttca
      721 gcagcacgcg cttgccggcg gcggcggaca acgcctcctg cagcagttcg cgctcgtcga
      781 tgtcgcggtc gaggacgatc tcgcgcggcg ccggctgctc ggcgtagtac tgcgacacga
      841 acgccgccag cacttcctcc gcgttgtccg cgccgttggt cctggggaag aacgcgcggg
      901 tgccgaggtt gcgcccgtcg cggaacgcca gcagcaacac gcacgcatgc gtgccctgca
      961 tcgcgcaggc gagcacgtcg aggtcggcgg ctcggccgtc gacgtactgg cgcgcctgca
     1021 gcttgcggat ggtggcgatg aggtcgcgca cgcgcgccgc ctcctcgaag tcgagccgct
     1081 cgctggcggc cgccatcgac tgctcgagtt cccggccgag ctcgtcgctg cgtccctcga
     1141 ggaacagttc gacctggtgc accgcccgcg cgtagtcgtt cgacggcacg aggccgacgc
     1201 agggcgcgct gcaacgcccg atctggtact gcaggcaggg ccgcgagcgg ttgcggaaca
     1261 cgctgtcctc gcagctgcgc aggcggaaca ggcggtgcat gaggttcagc gtctcgcgca
     1321 ccgcgcccac gctcgggtag gggccgaagt agcgacccgg gatcgcccgc gcgccgcggt
     1381 gcagcgcgag gcgcggccag cgctcctggg tgagcagcac gtacgggtag ctcttgtcgt
     1441 cgcgcagcat cacgttgtag cgcggcttga gcgacttgat cagctggttc tcgagcagca
     1501 gcgcctcggc ctcggtgcgg gtgaccgtga cctccatccg cgcgacctgc gccagcatcg
     1561 ccatcgtgcg cgcgggcttg ggcgtcgcgt tgaagtagct ggcgacgcgc ttcttcagtt
     1621 cgcgcgcctt gccgacgtac agcacgccgt tgtcggcggc gtacatgcgg tagacgcccg
     1681 gcgtgacgcc gaggccgcgg gcgaaggctt tgccgtcgaa cggcggcgcc gcgtcgggtc
     1741 ctgcggtcat tcgccgaccg gcacgcgctg cagcgcgccg ctgcgggtgt ccaggcgcag
     1801 gatggcatgc gcgtcggtgt cggcgatcca caccgcgccc gcggccacgg ccagcccgcc
     1861 agggccgtgc aggcgctgcg gcagcgacca ggtcgcgagt tcgccgccgc ccaggcgcag
     1921 cgtgcgcagc aggtcgttgc ccgcgtcggc gatccacagc accggcgcat ccggatcgag
     1981 tgcgatcgcc tgcggatcct gcagccgcgc gtcgtggcgg acgccgtcgg cgcgaccgtg
     2041 ctcccaggca tcgacgccca ccagcgtcga aacctggccc gtccgctcgt cgagcatgcg
     2101 gatcgccgac cccgcgccgt cgcacacgta cacgcgctgc tgcacgacgg cgagcgcgac
     2161 gggctcggcg aacgcggctt cggcgccggc gccgtcgcgt accgccatcg cgcccgaacc
     2221 cgcggccagc gacagcacgt ggcggccgag gtggtagcgc cacacccggt tgtcgccgca
     2281 gcaggcgacc agcagggcct cgcctgccag cgcgacggca cgcggctggt ccagcggcgc
     2341 ggcgcgggca tcggcgaccg cgccggccgc gggcacgccg ggactgccat tgccgaggac
     2401 ggtggccacc ccgccgctgc gcaggtcgat gcggcgcacg gcatggttgc cgctgtcggc
     2461 gacgtacagc gcgtcgcgct gcaggcacag tccctgcggg cgctggaacg cggccacgtc
     2521 ggcggcccca tcgatcagtc ccgggtcgcc gctgccgaac tggcgcagca cgcgcccggg
     2581 atggtcgcac tcgagcaccc ggtgatggcc ggagtcggcg atgtagaggt agcgcgcatc
     2641 gaccgcgagc ccggccgggt ggcgcagcgg catcgccggt tcgttcaggc gccgcagcac
     2701 gggcgacgcc aatgccccgg tttccccgac gtcctccagc agcgcgagcg tccgcgcctc
     2761 gacgtcccgc atgccgctgg cgccgacgaa gcggccgcgg atccggccgt ccccgtccag
     2821 cagcagcacg gtgggccagg cgtcgatgcc gaagtgctgc caggccgtcc agtcgcggtc
     2881 atgcgcgacc gggaaattga gcgcctggcg acccagctgg cgcgccgcgc ggcgcggatc
     2941 gcgctcgtgc tcgaagcggg gcgcatgcag cgccagcacc tgcagtcgcg ccggatgccg
     3001 cgcctgcagc cgggccagct cctgcaaccg ctgccgcgac cacgccgaac cggcactgac
     3061 gaaggccagc aggcagaccc ggccgcgcag ctgcgccagc cgcagcgacc cggcgaggtt
     3121 gagccattcg agcgtatgcg gcagttcggg agcgatcgcg gcgtccacgg cgtcctctcg
     3181 cggaatgccc cgattatgcg gcaagcccgg cggggctcag ccggcgaggc ggcgctcggc
     3241 ccgcgccagg tcttcggggg tgtccacgcc gggcgggaac ggcgcgggcg tgatgccgac
     3301 ggcgatgcgg tagcccgcct ccagcacccg cagctgctcc agcgattcga tccgctccag
     3361 ccgacccggc ggcagcgcgg tgaagcgctg caggaagccg gcccggtacg cgtagatgcc
     3421 gatgtggcgc agccacgcat cgccttgcgg cagcacgctg cgatcctgct cgaaggcgtc
     3481 gcgcgcccac gggacggggg cgcggctgaa gtacagcgcg tcgccattgg aggcacgcac
     3541 cagcttgacc gtgtgcgggt cgaacaactg ctccgcatcc tcgacggcgg tggcaagcgt
     3601 ggccatatcc gtgccggaat cccgcaggag ttccgccacc gcgcggatgc ccgcgggcgg
     3661 cgcgaagggc tcgtctccct gcaggttgac cacgacggtg tcgtcgtgcc agccggcgat
     3721 gcgcgcgcat tcggcgaggc ggtcgctgcc ggaggcatgc gcgggcgagg tcatcgcgat
     3781 gttcacgccg ctgccggcca gcgccccggc gatgcgcgcg tcgtccgccg ccacccagac
     3841 ttcgcgcgcg ccggccgcga gcgcgcgccg cgccacgtgc agcaccagcg gttcgccagc
     3901 gagcaggcgc agcggcttgc ccggcagccg gctggcggcg aagcgggcgg ggatggcgac
     3961 gacgaagtcg atggggctca tgcgcgctgc ggggccgggg atggcgcatg gtcgcggatc
     4021 gcgcggcccg ctgccaagcg gcacgggcgt tgcgggaatc gcccgcttcg cccgtcagcc
     4081 cgccttgcgc gcggcgcgca gcttttcgag cagcgcgacc cagaacgcct ccggcagctc
     4141 cgcccgcacc ggcacggcgt acgcgcgctc gccggcgaaa gccccgcact tgaccgcgtc
     4201 cttttcggtc atgagcaccg gcaggtcgct gccgaaccgc aggtccgcgg cggcataggc
     4261 atggtggtcg gggaaggcat gcgggaccac cgcgatgccg gcgccgcgca gcatcgtgaa
     4321 gaagcgcccg ggatcgccga tgccggcgac cgcgtgcacg cgatggccgg cgaacgccgc
     4381 cagcggccgc ggcctgccgc ccgcgagcgg ccgggcgtcg cccgcg
//
LOCUS       DATIQC010000161         5852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_329022, whole genome shotgun sequence.
ACCESSION   DATIQC010000161 DATIQC010000000
VERSION     DATIQC010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5852
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329022"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..2445)
                     /locus_tag="VLM17_03395"
     CDS             complement(76..2445)
                     /locus_tag="VLM17_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019659648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HSR64636.1"
                     /translation="MAQAPAATRRKARSDKARADKSAPSPRRQRLWRDIALILVAPLL
                     LYLLASLVTFSPNDPGWSHSGSVTAPLHNVGGRVGAWLADVLLYLTGYVAFLLPLILG
                     AIAWIALFGMDSDGDGDADLGPALRLVGMVGFLVAATGLLQLRVGAAQDFSAGSGGIL
                     GQLVGRSLYRGFGPVGGNLFLLALLLISVTLATGLSWLTVMDRLGAGVLALPGLLAKF
                     ARRGTREASEWQQTRALREEREETRRYDSELRAKRAPVRIEPPPAPVVEKSDRAKREQ
                     QIPLFHVGDGTGIPPLALLDDPKPQPKGYDEQTLETLSRQIEFKLKDFRIDAQVVGAY
                     PGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVVGLETPNTHR
                     EMIYLSELLRSKEYDKSSSPLTLALGKDIAGRPTVADLARMPHLLVAGTTGSGKSVAV
                     NAMVLSLLYKASAKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAANGLRWCVAE
                     MERRYKLMSAVGVRNLAGFNKKVKDAQDAGQPMMDPLFKPNPELGEAPKPLETLPYIV
                     IFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITCLIKANIPTR
                     IAFQVSSKIDSRTILDQSGAETLLGHGDMLDLPPGTAMPERVHGAFVSDEEVHRVVEH
                     LKQSGGGPDYIEGVLEEVQSLGDGVVVGATGLPESSGGAGDESDPLYDEAVRIVTETR
                     RASISGVQRRLKIGYNRAARLIEAMEAAGVVSAPEHNGDRTVLAPPPPR"
     gene            complement(2647..3714)
                     /gene="ald"
                     /locus_tag="VLM17_03400"
     CDS             complement(2647..3714)
                     /gene="ald"
                     /locus_tag="VLM17_03400"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008438192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HSR64637.1"
                     /translation="MRIGVPKETKTLEGRVALVPAAAGDLVKRGHEVWLEKDAGVKSG
                     FSDDQYTRLGVKIAPDAASLYEKGELIVKVKEPIAGDLAHLRKDHLLFCYLHLAAEPE
                     LTKKLLDIGLTGVAFETVELPNGDLPLLAPMSVIAGKIGVQVGTHLLHQPMGGKGKLL
                     GGLPSTERGKVVVFGAGKAGGASAALAAASGANVTVFEMRQDRMDEMMRLGNNVTALY
                     PYHDVVAREVASADLVIGAVLITGAKAPHVVTREMLKGMEPGSVVVDIAIDQGGCFET
                     SRPTTWKEPTYVEEGVTHFCVTNMPGAVPQTSSQAICAAILPWVNKLASGDWRGNEAL
                     VRGINVEGGRIVHPALQGMKL"
     gene            3936..4889
                     /gene="trxB"
                     /locus_tag="VLM17_03405"
     CDS             3936..4889
                     /gene="trxB"
                     /locus_tag="VLM17_03405"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HSR64638.1"
                     /translation="MTSTKHCHLLILGSGPAGWTAAVYAARANLKPVLVTGLQMGGQL
                     MTTTEVDNWPGDAHGLMGPDLMARMQAHAERFDTEVIFDHVHTADLSQRPFRLKGDNG
                     EYTCDALVIATGATAKYLGLESEEKFKGRGVSACATCDGFFFKDQDVAVIGGGNTAVE
                     EALYLSNIARKVYLVHRRDTLRAEKIMQDKLHAKIDAGRIEPVWHHVVDEVLGDDHGV
                     TALRVKSVQDGSTRELSIHGLFVAIGHTPNTSLFEGQLAMNNGYIEIRSGLAGGATAT
                     SVTGVFAAGDVADQHYRQAITSAGFGCMAALDAEKFLDKDA"
     gene            4957..>5852
                     /locus_tag="VLM17_03410"
     CDS             4957..>5852
                     /locus_tag="VLM17_03410"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64639.1"
                     /translation="MAVARITSSLADIRAADWDALHDGRNPFLAHAFLAGMEGNGVVR
                     ERLGWTPHHLTVWDGDALVAASPAYLKANSHGEFVFDHAWAHAYAEHGLPYFPKWLCA
                     VPYTPVAGPRLLARTDGWRAALPDTLLAMAREQGLSSVHANFLTEADDAFFDTRWLSR
                     LDVQYHWRNPAGTDGRAWSDFAGFLAAMDHRHRKNIRQERAKVARAGIGFRVVHGDEA
                     SEADLAAMHGFYLRTFAEYGNRPALTLEFLRHLARALPRRLVLFLAGRGGETIAGALC
                     LRGADTLYGRYWGASENVPGLH"
BASE COUNT          862 a         2070 c         2018 g          902 t
ORIGIN      
        1 ccctcgtcga tgcgatgggg cgagtctgcc ggcgcgcggc tgaatgcggg tttcatcgcg
       61 gcgccggggc gtggcctagc gcggcggcgg cggtgcgagc accgtgcggt cgccgttgtg
      121 ctcgggcgcg gacaccacgc ctgccgcttc catcgcctcg atcaggcgcg cggcgcggtt
      181 gtagccgatc ttcagccgcc gctgcacgcc cgagatcgat gcgcgccggg tctcggtgac
      241 gatgcgcact gcctcgtcgt acaacggatc ggattcgtcc cccgccccgc cgctgctttc
      301 cggaaggccg gtggcgccga cgacgacgcc gtcgccgagc gactgcactt cctcgaggac
      361 gccttcgatg tagtccggcc cgccgccgct ctgcttgagg tgctcgacga cgcgatgcac
      421 ttcctcgtcg ctgacgaagg cgccgtgcac gcgttcgggc atcgcggtgc ccggcggcag
      481 gtccagcatg tcgccgtggc cgagcagcgt ttccgcgccc gactggtcga ggatggtgcg
      541 cgagtcgatc ttgctcgaca cctggaacgc gatccgggtc gggatgttgg ccttgatcag
      601 gcaggtgatg acgtccaccg acggacgctg cgtggcgagg atcaggtgga tgccggccgc
      661 gcgcgccttc tgcgccaggc gggcgatgag ttcctccacc ttcttgccga cgatcatcat
      721 catgtcggcg aattcgtcga tgaagatgac gatgtagggc agcgtctcca gcggcttggg
      781 cgcctcgccg agctccgggt tcggcttgaa cagcgggtcc atcatcggct ggcccgcgtc
      841 ctgcgcgtcc ttgaccttct tgttgaagcc ggccaggttg cgcacgccca ccgccgacat
      901 cagcttgtag cggcgctcca tttccgccac gcaccagcgc aggccgttcg cggcctcctt
      961 catgtcggtg acgaccggcg cgagcaggtg cgggatgccc tggtagacgc tgagttccag
     1021 catcttcggg tcgatcatca gcatccgcag gtccttggcg gaggccttgt acagcagcga
     1081 cagcaccatc gcgttgaccg cgaccgactt gccggaaccg gtggtgcccg cgaccagcag
     1141 gtgcggcatg cgcgcgaggt cggcgacggt cggccggccc gcgatgtcct tgccgagcgc
     1201 cagcgtgagc gggctcgagg acttgtcgta ttccttggag cgcagcagtt cgctcaggta
     1261 gatcatctcg cgatgggtgt tcggcgtttc caggccgacc accgacttgc ccgggatgac
     1321 gtcgacgacg cgcaccgact tcaccgacag gccgcgcgcg atgtccttgt cgagcgagga
     1381 aatctggctg accttgatgc cgggcgcggg ttcgatctcg aagcgcgtga tcaccgggcc
     1441 cggataggcg ccgaccacct gcgcgtcgat acggaaatcc ttgagcttga actcgatctg
     1501 gcgcgacagg gtctcgagcg tctgctcgtc gtagcccttg ggctgcggct tgggatcgtc
     1561 gagcagggcg agcggcggga tgccggtgcc gtcaccgacg tggaacaagg gaatctgctg
     1621 ctcgcgcttg gcgcgatcgc tcttctccac cacaggcgcc ggcggtggtt cgatcctgac
     1681 cggcgcgcgc ttggcccgca gctcgctgtc gtagcggcgg gtttcctcgc gttcctcgcg
     1741 gagcgcgcgg gtctgctgcc actcgctggc ctcgcgggtg ccgcggcggg cgaacttagc
     1801 cagcaggccc ggcagcgcga gcacgcccgc gccgagcctg tccatcaccg tcagccagga
     1861 caggccggtc gccagcgtca ccgaaatcag cagcagcgcg agcaggaaga gattgccgcc
     1921 gaccggcccg aagccgcggt acagcgagcg cccgaccagc tggccgagga tgccgccgct
     1981 gccggcggaa aaatcctgcg cggcgccgac gcgcagctgg agcagcccgg tcgcggcgac
     2041 caggaagccg accatgccga ccaggcgcag cgccgggccc aggtcggcgt cgccatcgcc
     2101 atcgctgtcc atgccgaaca gcgcgatcca ggcgatcgcg ccaaggatca gcggcagcag
     2161 gaaggcgaca tagccggtca ggtacagcag gacgtcggcg agccacgcac cgacccggcc
     2221 gccgacgttg tgcagcggcg cggtcacgct gcccgaatgc gaccagcccg gatcgttcgg
     2281 cgagaaggtg acgaggctgg cgagcaggta cagcagcagc ggcgcgacca ggatcagcgc
     2341 gatgtcgcgc cacagccgtt gccggcgcgg cgagggcgcg ctcttgtcgg cccgcgcctt
     2401 gtcgctgcgg gccttcctgc gggttgctgc gggagcttgc gccactgtca ggttctggct
     2461 gaaggacagg tggttagtcg ttgaagatac agtaaaaaac gccacgcgaa agtgcgcggg
     2521 cgacgatcac cgcttcccca tgcaaaggaa gggcccgccg ggaacccgga caggcccttc
     2581 gtcaccgagg atgacacgga acgcgcgcgc cggcccggcc ggcggcgacg gccgctgcgc
     2641 ccatccttaa agcttcatcc cctgcagcgc cgggtgcacg atcctgccgc cctcgacgtt
     2701 gatgccgcgc accagcgcct cgttgccgcg ccagtcgccg gaggccagct tgttgaccca
     2761 cggcaggatc gccgcgcaga tcgcctgcga ggaggtctgc ggcaccgcgc cgggcatgtt
     2821 ggtcacgcag aagtgggtca cgccctcctc cacgtaggtc ggctccttcc aggtggtcgg
     2881 ccgcgaggtc tcgaagcagc cgccctggtc gatggcgatg tcgaccacga cgctgcccgg
     2941 ctccatgccc ttgagcatct cgcgggtcac cacgtgcggg gccttggcgc cggtgatcag
     3001 caccgcgccg atcacgaggt cggccgacgc cacttcgcgc gcgaccacgt cgtggtaggg
     3061 atagagcgcg gtgacgttgt tgccaaggcg catcatctcg tccatgcggt cctggcgcat
     3121 ctcgaacacg gtcacgttcg cccccgacgc cgccgccagc gccgccgacg cgccgcccgc
     3181 cttgcccgcg ccgaacacga cgaccttgcc gcgctcggtc gacggcaggc cgccgagcag
     3241 cttgcccttg ccgcccatgg gctggtgcag caggtgggtg ccgacctgca cgccgatctt
     3301 gccggcgatc accgacatcg gcgccagcag cggcaggtcg ccgttcggca gctcgacggt
     3361 ctcgaaggcg acgccggtca ggccgatgtc gagcagcttc ttcgtcagct ccggttccgc
     3421 ggccaggtgc aggtagcaga acaacaggtg gtccttgcgc aggtgcgcga ggtcgccggc
     3481 gatcggctcc ttcaccttga cgatcagttc gcccttttcg tacagcgacg cggcgtccgg
     3541 cgcgatcttc accccgaggc gggtgtactg gtcgtcggag aagccgctct tgacgcccgc
     3601 gtccttctcc agccagacct cgtggccgcg cttgaccagg tcgccggccg cggccgggac
     3661 gagcgccacg cgcccttcga gggtcttggt ttccttcggc acaccgatac gcatcgttct
     3721 ctccgtctcg cccgtggggg ctgctgtcgt gccccgcagg gcctgcatgg tcgaagcccg
     3781 cacgcgggtg cgggccggtc tgcgcggcgg cgcgatgcgc cccacgcagt gttccgtcac
     3841 tggatcggcg cgcgccttgt gttgcgtggt gggcgccgcc aagctatgcg gtctgcgcca
     3901 gcgaaggcgc ctcccgtcga ctgcgaatta tacccatgac ctccacgaag cactgccacc
     3961 tgctgatcct cggctccggc cccgcgggct ggaccgccgc tgtctacgcc gcgcgcgcca
     4021 acctcaagcc ggtgctggtc acgggcctgc agatgggcgg ccagctgatg acgacgaccg
     4081 aggtcgacaa ctggccgggc gatgcgcacg ggctgatggg ccccgacctg atggcgcgca
     4141 tgcaggcgca tgccgaacgc ttcgacaccg aggtcatctt cgaccacgtg cacaccgccg
     4201 acctctcgca gcgcccgttc cggctgaagg gcgacaacgg cgaatacacc tgcgacgcgc
     4261 tggtcatcgc gaccggcgcc accgccaagt acctcgggct ggagtcggag gagaagttca
     4321 agggccgcgg cgtgtccgcc tgcgcgacct gcgacggctt cttcttcaag gaccaggacg
     4381 tggcggtgat cggcggcggc aacaccgcgg tggaggaagc gctgtacctg tccaacatcg
     4441 cgcgcaaggt gtacctcgtg caccgccgcg acaccctgcg cgccgagaag atcatgcagg
     4501 acaagctgca tgcgaagatc gacgccggca ggatcgagcc cgtgtggcac cacgtggtcg
     4561 acgaggtgct gggcgacgac cacggcgtga ccgcgctgcg ggtcaagtcg gtgcaggacg
     4621 gcagcacccg cgagctgtcg atccacggcc tgttcgtggc gatcggccac accccgaaca
     4681 cctcgctgtt cgaaggccag ctggcgatga acaacggcta catcgagatc cgctccggcc
     4741 tcgccggcgg cgcgaccgcg acttcggtga ccggcgtgtt cgccgcgggc gacgtggccg
     4801 accagcatta ccggcaggcg atcacctccg ccggcttcgg ctgcatggcc gcgctggacg
     4861 cggaaaagtt cctcgacaag gacgcctgac cggcagtggt cgcggaagcc ccgtcgcgac
     4921 gacggcaccg acacgcctga cgggcgacgc tgggacatgg ccgtcgcccg catcacctcc
     4981 tcgctggccg acatccgcgc ggccgactgg gacgcgctgc acgacggccg caacccgttc
     5041 ctcgcacacg cattcctcgc cggcatggag ggcaacggcg tcgtgcgcga acggctcggc
     5101 tggacgccgc accacctgac cgtgtgggac ggcgatgcgc tggtcgccgc gtcgcccgcg
     5161 tatctcaagg ccaactcgca cggcgagttc gtgttcgacc atgcctgggc ccacgcctac
     5221 gcggagcacg gcctccccta cttcccgaag tggctgtgcg cggtgccgta cacgccggtc
     5281 gccgggccgc gcctgctggc gcgcacggac ggatggcgcg cggccctgcc ggacacgctg
     5341 ctggcgatgg cgcgcgagca gggcctgtcg tccgtgcacg ccaacttcct caccgaggcc
     5401 gatgacgcat tcttcgacac acgctggctg tcgcgcctgg acgtgcagta ccactggcgc
     5461 aatcctgccg gaaccgacgg ccgcgcgtgg agcgacttcg ccggcttcct cgccgcgatg
     5521 gaccaccggc accgcaagaa catccgccag gaacgcgcga aggtcgcgcg cgccggaatc
     5581 ggcttccggg tggtgcatgg cgacgaggcg agcgaggccg acctcgcggc gatgcacggg
     5641 ttctacctgc ggaccttcgc cgagtacggc aaccggccgg cgctgaccct cgaattcctg
     5701 cgccacctgg cccgcgcgct gccgcgccgg ctcgtgctgt tcctcgccgg gcgcggcggc
     5761 gagaccatcg ccggcgcgct ctgcctgcgc ggcgccgaca ccctgtacgg gcgctactgg
     5821 ggcgcgagcg agaacgtgcc cggcctgcac tt
//
LOCUS       DATIQC010000162         2761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_470738, whole genome shotgun sequence.
ACCESSION   DATIQC010000162 DATIQC010000000
VERSION     DATIQC010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470738"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..622)
                     /locus_tag="VLM17_03415"
     CDS             complement(<1..622)
                     /locus_tag="VLM17_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64640.1"
                     /translation="MRALAGTGIGLVSLLVAGAAPGGTAPLQPTFRLSDFHAPLVVDN
                     PWSPAQAGTRTVNYELEDGACHVNDVVVTHDVKHDFQGAYAGLAARAVRDRVWADPGC
                     DGHRGLLLEDTTDWIGQDDRGNVWYFGEATVEYTYDRAGHRIAASREGSWEAGRRGAR
                     AGILMFAHPVVGQFYLQEFEAGVAEDAALVRRVDASIATGLGRFYGC"
     gene            complement(769..>2761)
                     /locus_tag="VLM17_03420"
     CDS             complement(769..>2761)
                     /locus_tag="VLM17_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010487240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6537 domain-containing protein"
                     /protein_id="HSR64641.1"
                     /translation="SEGVQTIVVLSDDIAKWSDPAIFPVGVEFLDRTELDNVQKRLRE
                     VEGTSVLIYDQTCATEKRRRRKRGKMVDPAKRTFINPAVCEGCGDCGVKSNCVSVLPL
                     ETEFGRKREIDQSNCNKDFSCVNGFCPSFVTVEGGTLKRGKKISAADRLANLPAPVVR
                     TDLAQPWNILITGVGGTGVVTIGALLGMAGHLEGKGASVLDQTGLAQKGGAVTTHIRI
                     ARSPTDIHAVRIAAGEADLVLGCDMVVVNDYWALSKIRAGRSQVVLNSYEAMPGTFTT
                     RPDMQFPAADIVDAVRRALGGETQAVGKLDVIDATQLATALLGDAIATNLFLLGYAWQ
                     QGLVPLSHESLMRAIELNGAAIEMNKTAFAWGRLAALDLAPVLDAAGIAPQRSRGDLH
                     ELPVLAPGEWEGHEAGATVAPKPTLAEAPRHVPAHGGGDVAYLPLDDARLSRSLDELV
                     ARRVAFLTGYQNAAYAKRYADLVARVRTAEAERAPGSTALAEAVARHAFKLMAYKDEY
                     EVARLYTSGEFQRRVAEQFEGDYKLTFHLAPPLLAKKDAGGRLMKRTYGPWVFTAFRL
                     LAKLKFLRGTALDVFGRTAERAMERRLVTDYWRLMDELLPALDAGNVALAAELASIPE
                     GIRGYGHVKEAQLHAAKQREAELLARWRTPAMAGEAVAA"
BASE COUNT          374 a          956 c         1003 g          428 t
ORIGIN      
        1 tgcagccgta aaagcgaccg agccccgtcg cgatgctggc gtcgacccgc ctgaccagcg
       61 cggcgtcctc ggccaccccg gcttcgaatt cctgcaggta gaactggccg accaccgggt
      121 gggcgaacat caggatgccg gccctggcgc cgcgccggcc cgcttcccac gagccctcgc
      181 gcgaggcggc gatgcggtgg ccggcccggt cgtaggtgta ttcgaccgtg gcctcgccga
      241 agtaccagac gttgccgcgg tcgtcctggc cgatccagtc ggtggtgtcc tccagcagca
      301 gcccgcggtg gccgtcgcag ccgggatcgg cccacacgcg gtcgcggacc gcgcgcgcgg
      361 cgaggccggc gtaggcgccc tggaaatcgt gcttgacgtc gtgggtcacc accacgtcgt
      421 tgacgtggca cgcgccgtcc tcgagttcgt agttgacggt gcgggtgccg gcctgcgcgg
      481 gcgaccacgg attgtcgacg accagcgggg catggaagtc cgacagccgg aaggtcggct
      541 gcagcggcgc agtgccgccg ggcgcggcgc cggcgacgag cagggaaacg aggccgatgc
      601 cggtgcctgc aagcgctcgc atggcgcgtc ctccgcggtt ggacgggccg aagcgtgggc
      661 cgcgatccgc taccggcgcg cgaatttgcc gttaatgcgg gcgcggaaat ccccggaccc
      721 gaaagaaaaa gcccgcttgc gcgggcttct ccttccgcga tccgcggatc aggccgcgac
      781 cgcttcgccc gccatcgccg gcgtccgcca gcgcgccagc agttccgcct cgcgctgctt
      841 ggccgcgtgc agctgcgctt ccttgacgtg gccgtagccg cggatgccct cgggaatcga
      901 ggcaagctcg gcggcgagcg cgacgttacc ggcgtcgagc gccggcagca gctcgtccat
      961 gaggcgccag tagtcggtga ccagccggcg ttccatcgcc cgctcggcgg tgcggccgaa
     1021 cacgtcgagc gccgtgccgc gcaggaactt cagcttcgcc agcaggcgga acgcggtgaa
     1081 cacccacggg ccgtacgtgc gcttcatgag gcggcccccg gcgtccttct tcgccagcag
     1141 cggcggggcc aggtggaacg tcagcttgta gtcgccctcg aactgctcgg ccacgcggcg
     1201 ctggaactcg ccgctggtgt acaggcgcgc gacctcgtat tcgtccttgt acgccatcag
     1261 cttgaacgcg tggcgcgcga ccgcctcggc gagggcggta ctgcccggcg cgcgctccgc
     1321 ctcggcggtg cgcacgcggg cgacgaggtc ggcgtagcgc ttcgcatagg cggcgttctg
     1381 gtagccggtg aggaaggcga cgcggcgcgc gaccagctcg tcgagcgagc gcgacaggcg
     1441 cgcgtcgtcg agcggcaggt aggcgacgtc cccgccgccg tgcgcgggca cgtggcgcgg
     1501 cgcttccgcc agcgtcggct tgggcgcgac ggtggcgccg gcctcgtggc cttcccattc
     1561 gcccggtgcc agcaccggca actcgtgcag gtcgccgcga ctgcgctgcg gggcgatgcc
     1621 ggcggcgtcc agcaccgggg cgaggtcgag cgcggcgagc cggccccacg cgaatgcggt
     1681 cttgttcatc tcgatcgcgg cgccgttgag ttcgatcgcg cgcatcagcg actcatgcga
     1741 cagcggcacc aggccctgct gccacgcgta accgagcagg aagagattgg tggcgatcgc
     1801 atcgccgagc agcgcggtgg cgagctgggt ggcgtcgatg acgtcgagct ttccaacagc
     1861 ctgcgtctcg ccgcccagcg cgcggcgcac ggcgtcgacg atgtcggcgg ccgggaactg
     1921 catgtcgggg cgcgtggtga acgtgcccgg catcgcctcg tagctgttga gcacgacctg
     1981 cgagcggccg gcgcggatct tcgacagcgc ccagtagtcg ttgaccacga ccatgtcgca
     2041 gccgagcacg aggtccgcct cgcccgcggc gatgcgcacg gcgtggatgt cggtcggcga
     2101 ccgcgcgatg cggatgtggg tggtgacggc gccgcccttc tgcgcgaggc cggtctggtc
     2161 gagcacgctc gcgcccttgc cctcgaggtg cccggccatg ccgagcagcg cgccgatggt
     2221 gaccacgccg gtgccgccga cgccggtaat caggatgttc cagggctggg cgaggtccgt
     2281 gcgcacgacc ggggccggca ggttcgccag gcgatcggcc gcggagattt tcttccccct
     2341 cttcagcgtg ccgccttcca ccgtcacgaa gctcgggcag aagccgttga cgcagctgaa
     2401 gtccttgttg cagttgctct ggtcgatttc gcgcttgcgc ccgaattcgg tttccagcgg
     2461 cagcaccgag acgcagttcg acttcacgcc gcagtcgccg cagccttcgc agacggccgg
     2521 gttgatgaag gtgcgcttgg ccggatcgac catcttgccg cgcttgcggc ggcggcgctt
     2581 ttcggtcgcg caggtctggt cgtagatcag caccgaggtg ccctcgactt cgcgcaggcg
     2641 cttctggacg ttgtccagtt cggtgcgatc gaggaattcc acgccgaccg ggaagatcgc
     2701 cggatcgctc cacttggcga tgtcgtcgga gagcacgacg atcgtctgca cgccttcgct
     2761 g
//
LOCUS       DATIQC010000163         4749 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_470747, whole genome shotgun sequence.
ACCESSION   DATIQC010000163 DATIQC010000000
VERSION     DATIQC010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4749
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470747"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..548
                     /locus_tag="VLM17_03425"
     CDS             <1..548
                     /locus_tag="VLM17_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005926534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HSR64642.1"
                     /translation="GHSDMVGGVLVVGDNAELADQLAFLQNAVGGVQGPFDSFLALRG
                     LKTLHLRMRAHCDNALAIAQFLERHPAVEKVLYPGLPSHPQHALAQRQMHGFGGIVSV
                     YLKGGLDAAKRFCERTELFTLAESLGGVESLVNHPAIMTHASIPAARRAQLGVTDNLV
                     RLSVGVEDVADLIGDIEGALA"
     gene            545..1696
                     /gene="wecB"
                     /locus_tag="VLM17_03430"
     CDS             545..1696
                     /gene="wecB"
                     /locus_tag="VLM17_03430"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008265136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HSR64643.1"
                     /translation="MNTRPRRRVLVAMGTRPEAIKLAPVVLALQQEPWADVRVLATAQ
                     HRQMLDQVLAAFRIVPDVDLDIMRPDQSLPELTARLLQRLDRVLEEEAPDAVLVQGDT
                     TTVLAVAMAAFYRRIPVGHVEAGLRTGDIRNPFPEEMNRVVAGRLADWHFAPTETARA
                     NLLAERYAPASIHVTGNTVIDALLHVARESHPLPAGIPDGSRLVLVTAHRRENFGEPF
                     QQVCEGIRALAERHADVHVLYPVHPNPNVAGPARRILGDHPRISLCEPLDYRGFVAAM
                     KQACLILTDSGGVQEEAPALGKPVLVMRRETERPEAVAEGVVKLVGPCREAIVREGSR
                     LLDDPAAYAAMAKGASPYGDGHAARRIVAVLRDALAPAAPLPLSSAGTR"
     gene            1699..>4749
                     /locus_tag="VLM17_03435"
     CDS             1699..>4749
                     /locus_tag="VLM17_03435"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR64644.1"
                     /translation="MSNESPSAGRLPGMGFLVFGMHRSGTSAVARLLGEAGANLGERI
                     VPGSAGNEEGHWEDAFAVETNERLLADLGRSWDDPRPLPGGWLHADATRQAIARIADY
                     LRSSRSGERAWAIKDPRMCLLADAWMAAVAQAGCPHAVILVARHPAEVAGSLAARDGL
                     APATAELAWLRHTLEAERATRGAPRVVLGYAEFLDDPLRLLDRLRALPGGDVLRRAGA
                     QVVQSAKRHHRADDIPPGLLAEVWQQFQAAREPDAGTLDRCAGRLAEVDALYAPILTD
                     AFRERADLWRRAARAEAALVELGAESGGPVSLHRAVTEMGQALGAGIERVVDGISGDI
                     RRMQDEHAGAIESAARLGGQVGLLREELSRREQELQAARATIGDRERTLSEAREQQHA
                     DRATIDALERAASQARDGLQAAQATVGMLERTVAQAQAEQLVRAAQLEEHAARIAELE
                     EQTASDAREHEARVEHLRRRLAKAEADLGLMLGSRSWRITRPMRVLARLLRGELSQQD
                     RRRVLRGALRPLAQARLLPGSWRQRVMQDERDTIRPVPVSGEPPADPAAVAPAVRIPS
                     KPDVFVWAVIDWHFRMQRPQHLARSLAEQGHRVFYLSNNLVDATGPGFDVERLDDAGR
                     LFQVFLNAKGAPPIYFGSPCPATVAQLRRSMGELMQWADSDGGLCIVQHPFWTDVAAV
                     VPGAALLYDCMDHHAGFADNAPDVLQAETRLIEQSDMVVVTSAWLEQELAGSTSHRAL
                     VRNGCDFEHFRVPPAKRYHDARGRRVIGYYGAIAEWFDVELVRALARAFPDCLVLLVG
                     SDTAGVAAQLGNEPNVAFTGEVPYGRLPYYLHGFDVALLPFRVLPLTLATNPVKVYEY
                     LCAGKPVVAVDLPELRQFGGLVQCASGQEEFLQQVGVALRETDPDLPLQRMRFAAEQT
                     WAHRARELDEAIAALPQPRVSVIVLTYNNLEFTRACLHSLDAHSHWENLEVIVVDNAS
                     TDGTPDFLREWARAGSGRRIILNQDNVGFAAGNNIGLAAAGGAYL"
BASE COUNT          681 a         1712 c         1690 g          666 t
ORIGIN      
        1 acgggcattc cgacatggtc ggcggcgtgc tggtggtcgg cgacaacgcc gaacttgccg
       61 accagctcgc cttcctgcag aacgccgtgg gcggcgtgca gggcccgttc gacagcttcc
      121 tcgcgctgcg cggcctcaag accctgcacc tgcgcatgcg cgcgcactgc gacaacgcgc
      181 tggcgatcgc ccagttcctc gaacgccatc cggcggtcga gaaggtgctg tatccgggcc
      241 tgccctcgca tccgcagcac gcgctcgcgc agcgccagat gcacggcttc ggcggcatcg
      301 tgtcggtcta cctcaagggc ggcctggacg cggcgaagcg cttctgcgaa cgcaccgagc
      361 tgttcaccct cgccgaatcg ctcggcggcg tggaaagcct ggtcaaccac ccggcgatca
      421 tgacccacgc ctcgatcccg gccgcgcgcc gcgcccagct cggcgtgacc gacaacctgg
      481 tgcggttgag cgtgggagtg gaggacgtcg ccgacctcat cggagacatc gaaggcgccc
      541 tggcatgaac acccggcccc gccggcgcgt gctcgtggcg atggggaccc ggcccgaggc
      601 gatcaagctg gcgccagtcg tgctggccct gcagcaggag ccctgggcgg acgtccgcgt
      661 gctggccacg gcgcagcacc gccagatgct ggaccaggtg ctcgccgcgt tccggatcgt
      721 gcccgacgtc gacctggaca tcatgcggcc cgaccagtcg ctgcctgagc tgacggccag
      781 gctgctgcag cggctcgatc gcgtgctgga agaagaagcg cccgacgcgg tgctggtgca
      841 gggcgacacc accacggtgc tggccgtcgc catggccgcg ttctaccggc ggattcccgt
      901 cgggcatgtc gaagccggat tgcgcaccgg cgacatccgc aatccgttcc cggaagagat
      961 gaaccgcgtc gtcgccggtc gcctggccga ctggcatttc gcgcccaccg aaacggcacg
     1021 ggccaacctg ctcgccgagc ggtacgctcc ggcgtccatc catgtcaccg gcaacacggt
     1081 catcgatgcg ctgctgcacg tggcccgcga gtcccatccg ctgcccgcgg gaatccccga
     1141 cggcagtcgc ctggtgctcg tcaccgcgca ccgccgcgag aatttcggcg agcccttcca
     1201 gcaggtctgc gaaggcatcc gcgcgctggc cgaacggcat gccgacgtcc acgtgctcta
     1261 tccggtccat cccaatccca acgtcgccgg cccggcgcgc cggatcctcg gcgaccatcc
     1321 gcgcatctcg ctgtgcgagc cgctggacta ccgtggcttc gtggcggcga tgaagcaggc
     1381 gtgcctgatc ctcaccgatt ccggcggcgt ccaggaggaa gccccggcgc tcggcaagcc
     1441 cgtgctggtg atgcgtcgcg agaccgaacg ccccgaagcc gtggcggagg gtgtcgtgaa
     1501 gctggtcggt ccctgccgcg aggccatcgt ccgcgagggt tcccgcctgc tggacgaccc
     1561 ggctgcgtac gcggccatgg cgaagggcgc gtccccttac ggcgacggcc acgccgcgcg
     1621 gcggatcgtc gccgtgctgc gcgatgccct cgcgcccgcg gcgccgctcc cgctgtcttc
     1681 cgccgggaca cgatgacctt gtcgaacgaa tctcccagcg cgggacgcct gccgggcatg
     1741 ggcttcctcg tcttcggcat gcaccgcagc ggcacctcgg cggtcgcgcg gctgctcggc
     1801 gaggcgggcg cgaacctcgg cgagcgcatc gtgcccggca gcgccggcaa cgaggaaggc
     1861 cactgggagg acgcgttcgc ggtcgagacc aacgaacgcc tgctcgccga cctgggccgc
     1921 agctgggacg atccgcgtcc gctgcccggc ggttggctgc acgcggacgc cacccggcag
     1981 gcgatcgcgc ggatcgccga ctacctgcgg tcctcgcgct cgggcgaacg cgcctgggcg
     2041 atcaaggatc cgcgcatgtg cctcctcgcc gacgcctgga tggcggcggt cgcgcaggcc
     2101 ggttgcccgc acgcggtcat cctcgtggcg cggcatccgg cggaagtggc cggatcgctc
     2161 gcggcacgcg acggcctggc gccggcgacg gcggaactgg cctggttgcg gcataccctc
     2221 gaggccgagc gcgcgacccg gggcgctccc cgcgtcgtgc tcggctacgc cgaattcctc
     2281 gacgatccgc tgcggctgct ggatcgcctg cgcgcgctgc ccggtggcga cgtgctgcgg
     2341 cgggcgggcg cccaggtcgt gcaatccgcg aaacgccacc atcgcgccga tgacatccca
     2401 cccggcctgc tggccgaggt ctggcagcag ttccaggcag cgcgcgagcc ggatgcaggc
     2461 acgctggacc gctgcgccgg gcgcctggcc gaagtggacg cgctgtacgc gccgatcctc
     2521 accgacgcct tccgcgagcg ggccgatctc tggcgccgcg ccgcgcgcgc ggaggcggcg
     2581 ctggtcgaac tcggagccga gtccggcgga ccggtgtcgc tgcatcgcgc ggtgaccgaa
     2641 atgggccagg ccctcggcgc gggcatcgag cgcgtcgtcg acggcatctc gggcgacatc
     2701 cgccggatgc aggacgagca cgccggcgcg atcgaatcgg cggcgcgcct cggaggccag
     2761 gtgggcctgc tgcgcgagga gctgtcgcgg cgcgagcagg agctgcaggc cgcgcgggcg
     2821 acgatcggtg accgcgagcg gacattgtcg gaagcgcggg agcagcagca tgccgaccgc
     2881 gcgacgatcg acgccctcga gcgggcggcg tcgcaagcgc gcgatgggct gcaggccgcg
     2941 caagcgacgg tcggcatgct tgagcgcacg gtggcgcagg cgcaggcgga gcagctggtg
     3001 cgggctgcgc aactcgagga gcacgccgcc cggatcgcgg agctggagga acaaaccgcc
     3061 agcgacgcgc gcgagcacga ggcccgggtg gaacacctgc ggcggcgcct ggcgaaggcc
     3121 gaggccgacc tgggcctgat gctgggcagc cgctcatggc ggatcacccg gccgatgcgc
     3181 gtgctggcga ggctgctgcg cggcgaactg tcgcaacagg accgccggcg cgtcctgcgc
     3241 ggcgcgcttc ggccgctggc gcaggcacgc ctgcttccgg ggagctggcg ccagcgggtg
     3301 atgcaggacg agcgcgacac gatccgcccc gtcccggtgt ccggggaacc gccggccgac
     3361 ccggccgccg tcgcgccggc ggtacggatt ccatcgaagc cggacgtatt cgtctgggcg
     3421 gtgatcgact ggcatttccg catgcagcgg ccgcagcacc tggcgcgcag cctcgcggag
     3481 caggggcatc gggtgttcta cctgtccaac aacctggtcg acgccaccgg gccggggttc
     3541 gacgtggaac gcctcgatga cgccgggcga ctgttccagg tattcctcaa cgcgaagggc
     3601 gctccgccga tctatttcgg aagtccctgt ccggccacgg tcgcgcaatt gcgccggagc
     3661 atgggcgaac tcatgcaatg ggccgacagc gacggaggcc tgtgcatcgt gcagcacccg
     3721 ttctggaccg acgtcgccgc cgtggtgccg ggggccgcgc tgctgtacga ctgcatggac
     3781 caccacgccg gtttcgccga caacgcgccc gacgtgctgc aggccgaaac gcgcctgatc
     3841 gagcagtcgg acatggtggt ggtgacgtcg gcatggctgg agcaggaact tgccggaagc
     3901 acgtcgcatc gcgcgctggt ccgcaacggc tgcgatttcg aacacttccg cgtgccgccg
     3961 gcgaagcgct accacgatgc gcgcgggcgt cgggtcatcg gctactacgg tgcgattgcc
     4021 gagtggttcg acgtcgaact ggtgcgggcg ctggcgcggg cgtttccgga ttgcctggtg
     4081 ttgctggtcg gttccgacac ggccggggtc gcggcgcagc tcgggaacga gccgaacgtg
     4141 gcgttcaccg gcgaagtccc ctacggacgc ctgccgtact acctgcatgg cttcgacgtg
     4201 gccctgcttc ctttccgcgt cctgccgctg acgctcgcca ccaacccggt caaggtctac
     4261 gagtacctgt gcgcgggcaa gcccgtggtc gccgtcgacc tgcccgaact ccggcagttc
     4321 ggcggcctgg tgcagtgcgc gtcgggccag gaggaattcc tccagcaggt cggcgtggcg
     4381 ctccgcgaaa ccgatcccga ccttcccctg caaaggatgc ggttcgcagc cgaacagacc
     4441 tgggcgcacc gcgcgcgcga gctggacgag gcgatcgccg cccttcccca gccccgggtc
     4501 agcgtcatcg tcctcaccta caacaacctg gagttcaccc gggcctgcct gcacagcctc
     4561 gacgcccaca gccactggga gaacctcgag gtgatcgtgg tcgacaacgc ctccaccgac
     4621 ggcacgccgg acttcctccg cgaatgggcg cgcgccggca gcggccgccg gatcatcctc
     4681 aaccaggaca acgtcggttt cgccgcgggc aacaacatcg gcctggccgc cgccggcggc
     4741 gcctacctc
//
LOCUS       DATIQC010000164         2932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_188127, whole genome shotgun sequence.
ACCESSION   DATIQC010000164 DATIQC010000000
VERSION     DATIQC010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188127"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..935)
                     /locus_tag="VLM17_03440"
     CDS             complement(<1..935)
                     /locus_tag="VLM17_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008435999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HSR64645.1"
                     /translation="MKFVLFANTDWYLYNFRLSTARALAERGHEVVLLSPPGSYGERF
                     AGLGFRWIPLDMHRASLNPWRESRTLHALVGVLRRERPHLLHSFTVKCAIYGALASRM
                     ARVPAVVNAVAGLGYVFAADDLRARSLRPVVRSLMRFTLAAGNSRLILQNPDDAEAFV
                     RARIVPSRHIRLIRGSGVDTTRFWPRAADESCGPRPLRVLLAARLLWEKGVGEYVEAA
                     RRLKAAGRSIEFVIAGTPDPGNPNSVRQAEVERWVREGLVTWLGHVEDMPALLRSVDV
                     MALPSCYREGVPKSLIEAAASGLALVTTNLPGCREV"
     gene            complement(979..2157)
                     /locus_tag="VLM17_03445"
     CDS             complement(979..2157)
                     /locus_tag="VLM17_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64646.1"
                     /translation="MTRLDPMQDAMPWERPAAPPRLRAWHVYLLFFCWTVFSLYVYSH
                     FSTLGDSHTYLSGAYDDDEHAARTLVITYLAEGAFALLRVEFLAHLAFSLFAATGVAY
                     LVRQARPHGRFRWPLLAILLTPNFGVWSSVIGRESLFVALLGWFLGAVIGYYRTPGLR
                     RLTLAILCIAGMTFIRSPYGIGMGLFFLMVLAYRSGPRMNLSIGLQTLLFATVCGMVL
                     VAAWPYLDDYIANEVLPKAKGYFTVSSETTRTWIQLNSTQTLFSSLWWTLPLALVGPT
                     PGEVAARPMMLPFLVSGAVVFGCLLYSVGVAFRAPPGRERKILLLGWLPAVALILVAY
                     VPFGVYNSGSAIRYASCFLLFLVFPSLLLSSVDADAAAHAAVPRADVPELLRRSLGHA
                     "
     gene            complement(2228..>2932)
                     /locus_tag="VLM17_03450"
     CDS             complement(2228..>2932)
                     /locus_tag="VLM17_03450"
                     /inference="COORDINATES: protein motif:HMM:NF026018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HSR64647.1"
                     /translation="LKGHGPRADAPLATGPAPGVGEVWSQAWAYGLVALLFPVFFQIS
                     TVMLKYLDSDTQAGHYGIALSVMTAIYMIPVTIYQKFLLAKLHRWAAHDKPKFWLVYR
                     KGNYAMFAFGLLIALALVALTPWLVPLVFGKAYRPVVGILMLLAWCVPLRFLAVSAGS
                     VLLTENHMRYRVYALALAAATVVLLNLALIPRFHALGAAGATVAGEAVLLLATAFCVR
                     RFVLPSRAAAAEATPC"
BASE COUNT          533 a         1002 c         1038 g          359 t
ORIGIN      
        1 acttcgcggc agccgggcag gttcgtggtc accagcgcga ggccgctcgc ggcggcctcg
       61 atcaggctct tcggcacgcc ttcgcgatag cagctgggca gcgccatcac gtcgaccgag
      121 cgcagcagcg ccggcatgtc ctcgacgtgg ccgagccagg tcaccagccc ctcgcggacc
      181 caccgttcga cttccgcctg cctgaccgaa ttgggattgc ccgggtcggg cgtgcccgcg
      241 atcacgaact cgatgctgcg cccggccgcc ttcaggcgcc gcgcggcctc cacgtattcg
      301 ccgaccccct tctcccacaa caggcgcgcg gcgagcagca cgcgcagggg acgcgggccg
      361 caagactcgt cggcggcgcg cggccagaac cgcgtggtgt ccacgcccga tccgcggatg
      421 aggcggatgt gcctggacgg cacgatgcgg gcgcgcacga aggcctcggc gtcgtcggga
      481 ttctgcagga tcagccggga attgccggcc gccagcgtga agcgcatcag cgagcgcacc
      541 accggccgca ggctgcgcgc gcgcaggtcg tcggcggcga acacgtagcc gagcccggcg
      601 acggcgttga ccaccgccgg cacgcgcgcc atccgcgagg cgagcgcgcc gtagatcgcg
      661 cacttcaccg tgaagctgtg cagcaggtgc ggacgctcgc gccggagcac gccgaccagg
      721 gcatgcaggg tgcggctctc gcgccacgga ttgaggctgg cgcggtgcat gtcgagcggg
      781 atccagcgga agccgaggcc ggcgaaccgc tcgccgtagc tgcccggggg cgacagcagc
      841 acgacctcat gcccgcgttc ggccagcgcc cgcgcggtcg acaggcggaa gttgtacagg
      901 taccagtccg tgttcgcgaa caggacgaat ttcatcggtg cagcctcttc ctttcgtctg
      961 tgacaacgga cttccgcact aggcgtggcc cagcgacctg cgcagcagct ccggcacgtc
     1021 cgcgcgcggc acagcggcgt gcgccgccgc atcggcatcg accgaggaga gaagcagcga
     1081 cgggaacacc aggaacaaca ggaagcacga ggcgtagcgg atcgcgctgc cggagttgta
     1141 gacgccgaac ggcacgtagg cgaccaggat cagcgcgacc gccggcagcc agccgagcag
     1201 caggatcttg cgttcgcggc ccggcggggc gcggaacgcg acgcccaccg agtacagcag
     1261 gcagccgaac accacggcgc ccgagaccag gaagggcagc atcatcggac gcgcggccac
     1321 ttctcccggc gtcggcccca ccagggcgag cggcaacgtc caccagaggc tggaaaacag
     1381 cgtctgcgtg ctgttcagct ggatccacgt gcgggtcgtt tcggaactga cggtgaagta
     1441 gcccttcgcc ttcggcagca cctcgttggc gatgtagtcg tccaggtacg gccatgccgc
     1501 gaccagcacc attccgcaca ccgtcgcgaa caacaatgtc tgcagcccga tgctcaggtt
     1561 cattcgcggc ccggagcggt aggcgaggac catgaggaag aacagcccca tgccgatgcc
     1621 gtagggcgag cggatgaagg tcatgccggc gatgcagagg atcgccagag tcaggcgccg
     1681 caggccgggc gtgcggtaat agccgatgac ggcgccgagg aaccagccga gcagcgccac
     1741 gaacaacgat tcgcggccga tcaccgagga ccagacgccg aagttgggcg tgagcaggat
     1801 ggcgagcagc ggccagcgga accggccgtg cggacgcgcc tggcggacga ggtaggcgac
     1861 gccggtggcg gcgaacaggc tgaacgccag gtgggcgagg aactccaccc gcagcagcgc
     1921 gaacgcgcct tcggcgagat aggtgatcac cagcgtgcgg gccgcgtgtt cgtcgtcgtc
     1981 gtacgcgccg ctgaggtagg tatggctgtc cccgagcgtg ctgaagtggc tgtagacgta
     2041 cagcgagaac accgtccagc agaagaacag caggtacacg tgccaggccc gcagccgcgg
     2101 cggcgccgcg ggtcgttccc acggcattgc atcctgcatc ggatcgagcc tggtcatgcc
     2161 gtctccagcg cctgcgcacg aaggcgcgaa ccctcgggac tgtaagcacc gcgcccggat
     2221 cgccgcgtca acacggcgtc gcctcggcgg ccgccgcccg ggacgggagc acgaagcggc
     2281 gcacgcagaa ggcggtggcc agcagcagca cggcctcgcc ggcgacggtg gcgcccgccg
     2341 cgcccagcgc gtggaaccgc gggatcaacg ccaggttgag caggacgacg gtggccgcgg
     2401 ccagggcgag cgcgtagacg cggtagcgca tgtggttttc ggtgagcagc accgagcccg
     2461 ccgagaccgc caggaaccgc agcgggacgc accacgccag cagcatcagg atcccgacca
     2521 ccggccggta ggccttgccg aagaccagcg gcacgagcca cggcgtcagg gcgaccagcg
     2581 cgagcgcgat caacagcccg aacgcgaaca tcgcgtaatt gcccttgcgg tagaccagcc
     2641 agaacttggg cttgtcgtgc gcggcccagc ggtgcagctt ggcgagcagg aatttctggt
     2701 agatcgtcac ggggatcatg tagatcgccg tcatcaccga cagcgcgatg ccgtagtggc
     2761 cggcctgggt gtcgctgtcg aggtacttca gcatcaccgt gctgatctgg aagaacaccg
     2821 gaaacagcag cgcgaccaat ccgtaggccc aggcctgcga ccagacttcg cccacgcccg
     2881 gcgcgggacc ggtggccagc ggcgcatccg cgcgcgggcc atggcccttc aa
//
LOCUS       DATIQC010000165         4613 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_82017, whole genome shotgun sequence.
ACCESSION   DATIQC010000165 DATIQC010000000
VERSION     DATIQC010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4613
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82017"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /gene="sucC"
                     /locus_tag="VLM17_03455"
     CDS             <1..249
                     /gene="sucC"
                     /locus_tag="VLM17_03455"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159882.1"
                     /note="catalyzes the interconversion of succinyl-CoA and
                     succinate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit beta"
                     /protein_id="HSR64648.1"
                     /translation="SPKLKAILVNIFGGIMRCDVIAEGVIEAAKAVHLKVPLVVRLQG
                     TNVEKGRELLANSGLAITPADDLNDAAQKAVASVKKAA"
     gene            complement(366..1829)
                     /gene="sufB"
                     /locus_tag="VLM17_03460"
     CDS             complement(366..1829)
                     /gene="sufB"
                     /locus_tag="VLM17_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HSR64649.1"
                     /translation="MAIETNTAPVENAEILQQLGRRYDAGFVTAIESDSLPPGLDEGV
                     IRALSARKDEPGWMTEWRLAAYRHWLTMPVPHWAKLSIAPIDFQAISYYSAPKGPKYK
                     SLDEVPQELLDTYEKLGVPLHERAKLAGVAVDAVFDSVSVGTTFRKELADKGIIFCSM
                     SEAIREHPDLVRKYLGSVVPTGDNYFAALNSAVFSDGSFVFIPEGVRCPMELSTYFRI
                     NAGHTGQFERTLIIAEARSHVSYLEGCTAPQRDENQLHAAVVELVALDDAEIKYSTVQ
                     NWYPGDEEGRGGIYNFVTKRAECRGARSKVTWTQVETGSAITWKYPSCVLLGDDSVGE
                     FHSVALTHHRQQADTGTKMIHVGKRTKSKIVSKGISAGRGQNSYRGLVKVERSAEGAR
                     NHTQCDSLLIGKQCGAHTFPYIEVKHPSATVEHEATTSKISDEQLFYCRSRGIGEEDA
                     VSMIVDGFCKSVFRELPMEFAVEAKKLLEVSLEGAVG"
     gene            complement(1841..2293)
                     /locus_tag="VLM17_03465"
     CDS             complement(1841..2293)
                     /locus_tag="VLM17_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010369303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly regulator"
                     /protein_id="HSR64650.1"
                     /translation="MLRVTRLTDYATVVLTVLAARPDEVLSAPELAEHAGLELPTVAK
                     ILKPLAQAGLVAGFRGANGGYRLARPAAAISLFEVVEALEGPLGMTECSIHAGSCGIE
                     QSCGVRANWRRINDVVADALRSVSLAQMLAPPPPAAPRRTIPAVLATG"
     gene            complement(2492..3028)
                     /locus_tag="VLM17_03470"
     CDS             complement(2492..3028)
                     /locus_tag="VLM17_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HSR64651.1"
                     /translation="MSRFHLVLPALAALALCACQQARDAGVATAEAAPRAEADLVARG
                     EYLTRIGGCNDCHTPGYPESSGTVPKTQWLVGSALGWNGPWGTTYPANLRLKLQEMDE
                     AKWMDYSAGLHTRPPMPDFAVRAMNGDDRRAIYRFVRSLGPAGQPAPAYQPPGQAPKV
                     PYVQWVLPASPPKAPAAG"
     gene            3158..3625
                     /locus_tag="VLM17_03475"
     CDS             3158..3625
                     /locus_tag="VLM17_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HSR64652.1"
                     /translation="MPRKIVARKSAIHGNGVFALAPIAKGERVIEYKGRRRTHDEVDA
                     GDTGGVESGHTFLFTLNDDYVIDANHQGNSARWINHSCNPNCEAVLEEHDGSDRRRDR
                     VFIEARRAIKAGEELTYDYGITLDEPHTARLKKIWACRCGSKNCTGTMLKPKR"
     gene            3774..>4613
                     /locus_tag="VLM17_03480"
     CDS             3774..>4613
                     /locus_tag="VLM17_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSR64653.1"
                     /translation="MRLFPALLLLALPPSANAVTIDGRIDPAEWQGARHVTDFRVTQP
                     LTGAQASYPTEAWVLATPEGLAVAFRNMQPAGVPRTHRLIRRDEQAQVDRNNLMVDFD
                     GDGRTGYNFMVTSTDGINDAVITNENRFSTDWDGNWRHATSEDAEGWSVEMLIPWYIA
                     PMARGSDGHRTLRIYLDRVVGASGERAAWPAASFERPRFLSDFAPVEVPLYSQALFAI
                     TPYASALYDNIDHRDHFDGGADILWKPNGQFQLTATINPDFGQVESDDIVVNFSANET
                     FFSD"
BASE COUNT          726 a         1563 c         1608 g          716 t
ORIGIN      
        1 agcccgaagc tcaaggcgat cctcgtcaac atcttcggcg gcatcatgcg ctgcgacgtg
       61 atcgccgagg gcgtcatcga ggcggcgaag gccgtgcacc tgaaggtgcc gctcgtcgtg
      121 cgcctgcagg gcacgaacgt cgaaaagggg cgcgagctgc tcgccaattc cgggcttgcg
      181 atcacgccgg cggacgatct caacgatgcg gcgcagaagg cggtcgcgtc ggtgaagaag
      241 gccgcataac gaacgtagcc ccctctcccg cgtgcgggag agggttgggg tgagggaaag
      301 ttgggacaag cttccctcat ccgccttcgg caccttctcc cgccagcggg agaagggaaa
      361 gacaattacc caaccgcgcc ctcgaggctc acttccagca gcttcttcgc ctccaccgcg
      421 aactccatcg gcaactcgcg gaagacgctc ttgcagaagc cgtcgacgat catcgatacc
      481 gcgtcctcct cgccgatgcc gcgcgagcgg cagtagaaca gctgctcgtc gctgatcttg
      541 gaggtggtcg cctcgtgctc gacggtcgcg ctcgggtgct tgacctcgat gtaggggaag
      601 gtgtgcgcgc cgcattgctt gccgatcagc agcgaatcgc actgggtgtg gttgcgcgcg
      661 ccctcggcgc tgcgctcgac cttgaccagg ccgcggtacg agttctgccc gcgcccggcg
      721 ctgatgccct tgctgacgat cttcgacttg gtgcgcttgc cgacgtggat catcttggtg
      781 ccggtgtccg cctgctggcg gtggtgggtc agcgcgaccg aatggaactc gccgaccgag
      841 tcgtcgccga gcagcacgca gctcgggtac ttccaggtga tcgccgagcc ggtctcgacc
      901 tgcgtccacg tgaccttgct gcgcgcaccg cggcattcgg cgcgcttggt gacgaagttg
      961 tagatgccgc cgcggccttc ctcgtcgccc gggtaccagt tctgcaccgt cgaatacttg
     1021 atctcggcat cgtccagcgc gaccagttcg accaccgcgg cgtgcagctg gttctcgtcg
     1081 cgctgcggcg cggtgcagcc ttcgaggtag gagacgtggc tccgggcttc ggcgatgatc
     1141 agggtgcgct cgaactggcc ggtgtgcccg gcgttgatgc ggaaataggt gctcagctcc
     1201 atcgggcagc gcacgccctc cgggataaac acgaacgagc catccgagaa caccgcggaa
     1261 ttgagcgcgg cgaaatagtt gtcgccggtc ggcaccacgc tgccgaggta cttgcgcacg
     1321 aggtccggat gctcgcggat cgcctccgac atcgagcaga agatgatgcc cttgtcggcg
     1381 agttccttgc ggaaggtggt gccgaccgag accgagtcga acaccgcgtc caccgcgacg
     1441 ccggcgagct tggcgcgctc gtgcagcgga acgcccagct tctcgtaggt gtcgagcagt
     1501 tcctgcggca cctcgtccag cgacttgtac ttcgggccct tgggcgcgga gtagtagctg
     1561 atcgcctgga agtcgatcgg cgcgatggac agcttggccc agtgcggcac cggcatggtc
     1621 agccagtggc ggtaggccgc caggcgccat tcggtcatcc atccgggctc gtccttgcgc
     1681 gccgacaggg cgcggatgac gccttcgtcc aggcccgggg gcagcgaatc ggattcgatg
     1741 gcggtgacga agccggcgtc gtagcgacgt cccagctgct gcaggatctc ggcgttttcc
     1801 acgggagcgg tattggtttc gatggccatg gtggctgtcc tcacccggtg gccaggacgg
     1861 cggggatggt cctgcgcgga gcggccggtg gtggcggcgc cagcatctgc gcgagcgaca
     1921 cgctgcgcag cgcgtcggcg accacgtcgt tgatgcggcg ccagttggcg cgcacgccgc
     1981 aggactgctc gatgccgcag ctgccggcgt ggatgctgca ctcggtcatg ccgagcgggc
     2041 cttccagcgc ctcgaccacc tcgaacaggg aaatcgccgc cgccggccgg gcgaggcgat
     2101 agccgccgtt ggcgccgcgg aagccggcca ccagcccggc ctgcgccagc ggtttgagga
     2161 tcttggcgac ggtcggcagc tcgaggccgg cgtgctcggc cagctcgggc gcgctcagca
     2221 cctcgtccgg ccgcgcggcg agcacggtca ggacgacggt ggcgtagtcg gtgaggcggg
     2281 tgacccggag catgggagcg acgcgcggat ggattccgta ccgaaattgt acggttttgc
     2341 gcgacgcggg gccagtggcc ggatggcagc ctgttcccgt gcccggtagc gaacagcccc
     2401 gcgccccgaa agggggcgcc aacgcgatcc ggcgcactgc cggttcgtgc agccgccgct
     2461 gcgtgctcgg ggacggcgcg gcgacggcgg ctcagcccgc ggctggcgcc ttcggcggcg
     2521 atgccggcag cacccactgc acgtacggga ccttcggtgc ctggccgggc ggctggtagg
     2581 ccggcgccgg ctggcccgcc ggccccagcg aacgcacgaa gcggtagatc gcgcggcggt
     2641 catccccgtt catcgcgcgc accgcgaagt cgggcatcgg cggccgcgtg tgcaggccgg
     2701 cgctgtagtc catccacttc gcctcgtcca tttcctgcag cttgaggcgc aggttggcgg
     2761 ggtaggtggt gccccaggga ccgttccagc ccagggccga accgaccagc cattgcgtct
     2821 tcggcacggt gccgctggat tcggggtagc cgggggtgtg gcagtcgttg cagccgccga
     2881 tgcgggtgag gtattcgccg cgcgcgacga ggtcggcctc cgcacgcggt gcggcttcgg
     2941 cagtggcgac gccggcgtcg cgcgcctgct ggcaggcgca cagcgcgagc gcggcgagtg
     3001 cgggcaggac gaggtggaag cgggacatcc ggtgctccgt gctggaatgc ggtacggacc
     3061 atgagacgta ggagcgggaa ggaagcggac acgtacacgg ccacgccgtc gcgcattggg
     3121 cgacaatggt cgtctttccc ctccccggat gtccccgatg ccgcgcaaga tcgtcgcccg
     3181 caagtccgcc atccacggca acggcgtgtt cgcccttgcc ccgatcgcca agggcgagcg
     3241 cgtcatcgaa tacaagggtc gccgccgcac ccacgacgag gtggatgccg gcgacaccgg
     3301 cggcgtcgaa tcgggccaca ccttcctgtt cacgctcaac gacgactacg tcatcgacgc
     3361 gaaccaccag ggcaacagcg cgcgctggat caaccacagc tgcaacccca actgcgaggc
     3421 ggtgctcgag gagcacgacg gcagcgaccg tcgccgggac cgcgtcttca tcgaggccag
     3481 gcgcgcgatc aaggccggcg aggagctgac ctacgactac gggatcaccc tcgacgagcc
     3541 gcataccgcg cggctgaaga agatctgggc ctgccgctgc gggtcgaaga actgcaccgg
     3601 cacgatgctc aagcccaagc gctgagcagc gcggcgcggc gaaacgccct ctcgcgcggg
     3661 ttccccgctt ccggcgatgc gccggagcgg cggatggttg ggatgacttt cgccagtcgg
     3721 acgcgcgccg cgatgcggct agccttgccc ggccctccgc aggacgaacc cgcatgcgcc
     3781 tgttccccgc cctgttgctc ctcgcgctgc cgccgtcggc caatgcggtc accatcgacg
     3841 gtcgcatcga ccccgccgag tggcagggcg cgcgccacgt caccgatttc cgcgtgaccc
     3901 agccgctgac cggtgcgcag gcttcctatc cgacggaggc atgggtcctc gccacccccg
     3961 aggggctcgc ggtcgcgttc cgcaacatgc agccggcggg cgtgccgcgc acgcaccggc
     4021 tgatccgccg cgacgaacag gcgcaggtgg atcgcaacaa cctgatggtc gacttcgacg
     4081 gcgacggccg caccggctac aacttcatgg tgacctcgac cgacggcatc aacgacgcgg
     4141 tgatcaccaa cgagaaccgc ttctcgaccg actgggacgg caactggcgg cacgcgacca
     4201 gcgaggatgc cgagggctgg tcggtggaga tgctgattcc ctggtacatc gcgccgatgg
     4261 ccaggggcag cgacggccat cgcacgctgc gcatctacct cgaccgcgtc gtcggtgcga
     4321 gcggcgagcg cgcggcgtgg cccgcggcga gcttcgaacg cccgcgcttc ctgtccgact
     4381 tcgcgccggt cgaggtgccg ctgtacagcc aggcactgtt cgcgatcacg ccctacgcct
     4441 cggcgctgta cgacaacatc gaccaccgcg accacttcga cggcggcgcg gacatcctgt
     4501 ggaagccgaa cgggcagttc cagctgaccg cgacgatcaa tccggatttc ggccaggtcg
     4561 aaagcgacga catcgtcgtc aacttcagcg ccaacgaaac cttcttcagc gac
//
LOCUS       DATIQC010000166         2796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_505618, whole genome shotgun sequence.
ACCESSION   DATIQC010000166 DATIQC010000000
VERSION     DATIQC010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505618"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VLM17_03485"
     CDS             <1..411
                     /locus_tag="VLM17_03485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64654.1"
                     /translation="SPGPPVRYLYVRGLAELAAGDGSAMQATLSQLRRQQDAPDNRKA
                     HKAADALEGEWRLQAGDGAAAVRLLRQAHAAPGYEYDAYALALARALEATGDRAGARA
                     AAQAASRREAPGELRLDLEADRRQATRLLQSLGR"
     gene            complement(427..1719)
                     /locus_tag="VLM17_03490"
     CDS             complement(427..1719)
                     /locus_tag="VLM17_03490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64655.1"
                     /translation="MNIPMFSILGLAIGTLLAAVSDAPRRPAPTHAAAATAAGAAWPT
                     GGLVAASAQPVPKPGRLVKLRIVSPLYKPTLPYGIEFASGWPLVIRAVGSPTALGIAT
                     NAGPVEFPGIGQTGYLILADPDACLELPPPFFRGNPPCSTAESDETYVEFTPDADAAG
                     AQDHGGNPGRLLALADPGASGEPRYDGVGDDGDGDNILDPVETPVGPATGAAVSDGLG
                     YGADDDLPGLVLLSPVGPGLVLNADFSRPAVLTQRNLAGFLGQVGYELNDPDRSTSFT
                     ASMLVPTGLVAPVLKVDGCVGTYDNGVCDGATRYQVDGGPIRDDRGSISVQALYPQLV
                     NAMPYYEVRAFLVSGIAPSTLADLDHDGRVTAADARLAGYDVISNEEVVRVRQYATDI
                     CTGVPLANVVYADFDGNGHATSLFVCPAGPGQITKPPQ"
     gene            1830..2624
                     /locus_tag="VLM17_03495"
     CDS             1830..2624
                     /locus_tag="VLM17_03495"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007966679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HSR64656.1"
                     /translation="MSSAFGTETVLDVRHWTDDYFSFTTTRDDGFRFENGQFVMIGLE
                     VDGKPLMRAYSIASANWEEQLEFFSIKVPNGPLTSRLRHVRPGDRVLVGRKPTGTLLV
                     SDLHPGRNLYLLGTGTGFAPWLAVIKDPATYERFERVVLCHGVRSERDLAYRDYIANE
                     LPHHEYLGEQIKRQLRYYPAVTREEFAFEGRDQRGRLTDLMASGRMMEQLGLAPLDPA
                     HDRAMVCGGPQVLADFRALLDGRGFAAAPRIGVPGQYVFERAFVEK"
     gene            complement(2716..>2796)
                     /locus_tag="VLM17_03500"
     CDS             complement(2716..>2796)
                     /locus_tag="VLM17_03500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HSR64657.1"
                     /translation="LQRRIAAKHGYQIEEHALVLYVRKKR"
BASE COUNT          385 a         1013 c         1015 g          383 t
ORIGIN      
        1 tcgcccggtc cgccggtccg ctacctgtac gtgcgcggcc tcgccgaact cgccgccggc
       61 gacgggtcgg ccatgcaggc cacgctgtcg cagctgcgcc gccagcagga cgcgcccgac
      121 aaccgcaagg cgcacaaggc ggccgacgcg ctcgagggcg aatggcgcct gcaggccggc
      181 gacggggccg ccgcggtgcg cctgctgcgg caggcacatg ccgcgcccgg ttacgaatac
      241 gacgcctacg ccctcgccct cgcccgcgcg ctcgaggcga cgggcgaccg tgccggcgca
      301 cgcgcggcgg cgcaggccgc gagccgacgc gaggcgccgg gcgaactccg gctcgacctg
      361 gaagccgacc gccgccaggc gacgcgactg ctgcagtccc tcggtcgctg agccttgccg
      421 ccgccgctac tgcgggggct tggtgatctg acccggcccg gccgggcaga cgaacagcga
      481 cgtcgcatgg ccgttgccgt cgaagtcggc gtacaccacg ttggccagcg ggacgccggt
      541 gcagatgtcg gtggcgtact ggcgcacgcg cacgacttcc tcgttggaga tcacgtcgta
      601 accggccagc ctggcgtcgg cggcggtgac gcggccatcg tggtcgaggt cggccagcgt
      661 ggacggcgcg atgccgctga ccaggaacgc gcgcacctcg tagtacggca tcgcgttgac
      721 cagctgcgga tacagcgcct gcacgctgat gctgccgcgg tcgtcgcgga tcgggccacc
      781 gtcgacctgg tagcgcgtgg cgccgtcgca gaccccgttg tcgtacgtcc cgacgcagcc
      841 gtcgaccttg agcaccggcg ccaccaggcc ggtcggcacc agcatcgacg cggtgaagct
      901 ggtcgagcgg tccgggtcgt tgagctcgta gccgacctgg ccgaggaagc cggcgaggtt
      961 gcgctgggtc agcacggcgg ggcggctgaa atccgcgttc aacaccaggc ccgggcccac
     1021 cggcgagagc agcaccagcc ccggcaggtc gtcgtcggcg ccatagccga gcccgtcgga
     1081 aaccgctgcg ccggtggccg gtccgaccgg cgtttccacc ggatcgagga tgttgtcgcc
     1141 atcgccgtcg tcgccgacgc cgtcgtagcg cggctcgccg ctcgcgcccg gatcggccag
     1201 cgcgagcagc cgtcccgggt tgccgccgtg gtcctgcgcg ccggctgcgt cggcatcggg
     1261 cgtgaactcc acgtaggtct cgtccgattc cgcggtcgag cacggcgggt tgccgcggaa
     1321 gaacgggggc ggcagttcga ggcaggcgtc cgggtcggcc aggatgaggt aaccggtctg
     1381 gccgatgccg gggaactcca ccggcccggc gttggtggcg atcccgagcg ccgtcggcga
     1441 tcccaccgcg cggatcacca gcggccagcc gctggcgaac tcgatcccgt aaggcagcgt
     1501 cggcttgtac agcggcgaca cgatgcggag cttcaccagc cgccccggct tcggcacggg
     1561 ctgcgcggac gcggcgacca gccccccggt cggccacgcc gcgcctgccg ccgtcgcggc
     1621 cgcggcatgc gtgggcgccg gtcgccgcgg cgcatcggac accgcggcca gcagcgtgcc
     1681 gatcgccagg cccaggatgc tgaacatcgg gatgttcatg cgcggctccg cgggtgtgtt
     1741 cccggaacaa cgccgcgccg catgcgtcac ggacacccgc cggccggtgg cgggtaaaat
     1801 gcgcggctcg cttccctccc cacgccccga tgtcctccgc cttcggcacc gagaccgtgc
     1861 tggacgtccg tcactggacg gacgactact tcagcttcac caccacccgc gacgacggtt
     1921 tccgattcga gaacggccag ttcgtgatga tcgggctgga ggtggacggc aagccgctca
     1981 tgcgcgcgta ctcgatcgcg agcgcgaact gggaggaaca gctcgagttt ttcagcatca
     2041 aggtgccgaa cggcccgctg acctcgcgcc tgcgccacgt ccggccgggc gaccgcgtgc
     2101 tggtcgggcg caagccgacc ggcaccctgc tcgtcagcga cctgcacccg ggtcgcaacc
     2161 tgtacctgct cggcaccggc accggtttcg cgccgtggct ggcggtgatc aaggacccgg
     2221 cgacctacga gcgcttcgag cgggtcgtgc tctgccacgg cgtgcgcagc gagcgggacc
     2281 tggcctatcg cgactacatc gccaacgagc tgccgcacca cgaatacctc ggcgagcaga
     2341 tcaagcggca gttgcgctac tacccggcgg tgacgcgcga ggaattcgcg ttcgagggcc
     2401 gcgaccagcg cggccggctc accgacctga tggcgagcgg gcggatgatg gagcagctcg
     2461 gcctcgcgcc gctggacccg gcgcacgatc gcgcgatggt gtgcggcggc ccgcaggtgc
     2521 tggcggactt ccgcgccctg ctcgacggcc gcggcttcgc cgccgcgccg cgcatcggcg
     2581 tgccgggcca gtatgtgttc gagcgggcgt tcgtggagaa gtgagcggac ggacgaagcg
     2641 acccgcctgg cgaggccctg cgtgcctgcg gcggttgcgg tcgggctccg gccggtcgaa
     2701 gggccgtcgc gtgcctcagc gcttcttgcg cacgtacaac accagcgcgt gttcctcgat
     2761 ctggtagccg tgcttcgcgg cgatgcgccg ctgcag
//
LOCUS       DATIQC010000167         2715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_576864, whole genome shotgun sequence.
ACCESSION   DATIQC010000167 DATIQC010000000
VERSION     DATIQC010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2715
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576864"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1569
                     /locus_tag="VLM17_03505"
     CDS             <1..1569
                     /locus_tag="VLM17_03505"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HSR64658.1"
                     /translation="EAQEADVVVVNHHLLLADLALKQEGFGEILPGAQAFVVDEAHQL
                     PELAAQFFGEGLGARPLVELARDAIAECKSVTGAIASVQPVAAQLEQATRALRAAMEA
                     LPARGTRQRALQSPAVEEGLHALADALLRFGEAMAALRDAAPGFDSCLARAQEFGRRL
                     DRWIGRSRTWQQDDGVDAPMPDAVDARDGPDATPDPTADALPDRGRAPRQPRSGSSAE
                     GGGLADGEPEGDVALGRSTSVHWYELSPRGFRLQRTPLDVSGPLRAHRERSHAAWVFT
                     SATLSVAGGFEHVAERLGLVDPATLLQPSPFDWNTQALCYLPRRLPEPMARDYTTALV
                     DALMPVLEASGGRAFVLFASHRALREAAELLRDGPWPLFVQGEAPRQALLQRFRESGN
                     GVLLGAASFREGVDVVGEALSVVVIDKLPFAAPDDPVFEARLDAVRRRGGNPFRDEQL
                     PQAVIALKQGVGRLIRSETDRGVLVLCDPRLTGKSYGRVFLESLPAFPLTRDVDDVRA
                     FFAAESAPWPPGER"
     gene            1569..1976
                     /locus_tag="VLM17_03510"
     CDS             1569..1976
                     /locus_tag="VLM17_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR64659.1"
                     /translation="MDSSKPRVHGIGGVFFKSRDPGALSAWYERHLGFPVAKWGGAKF
                     DWRRADTGAAATTVWSPFPEDTGYFAPGDKPFMLNLRVDDLDGLLEALRAEGCQVLDR
                     REDGEFGSFGYVVDPEGLVLELWQPPAEAGSTP"
     gene            1973..2674
                     /gene="tsaB"
                     /locus_tag="VLM17_03515"
     CDS             1973..2674
                     /gene="tsaB"
                     /locus_tag="VLM17_03515"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HSR64660.1"
                     /translation="MKLLAFETATEACSVALWLDGEVRERFELAPRRHAELALPWAEQ
                     LLAEAGLARSQLDAIAIGRGPGAFTGVRLAIALGQGIALALDRPLLPVSTLAALAFDA
                     PGERILAAIDARMGEVYLGAFARDGEGLRALAAECVAAPDAAPVPEGDGWSAVGTGFA
                     AAQGALQERLQGRLAGLDAMALPHAAAVARLGASALARGEGLAPERVEPAYLRDNVAL
                     TLEQQQALRAARRGA"
BASE COUNT          317 a          985 c         1040 g          373 t
ORIGIN      
        1 gaggcgcagg aagccgacgt cgtcgtcgtc aaccaccacc tgctgctcgc cgacctcgcg
       61 ctcaagcagg aaggcttcgg cgagatcctc ccgggcgcgc aggccttcgt ggtcgacgag
      121 gcgcaccagc tgccggaact cgccgcgcag ttcttcggcg aggggctcgg cgcgcgcccg
      181 ctggtcgagc tggcgcgcga cgcgatcgcc gaatgcaaga gcgtcaccgg cgcgatcgcc
      241 agcgtgcagc cggtcgccgc gcagctggag caggcgacgc gcgcgctgcg cgccgcgatg
      301 gaagcgctgc cggcgcgcgg cacgcggcag cgcgcgctgc agtcgccggc ggtcgaggag
      361 ggcctgcatg cgctggccga cgccctgctg cgcttcggcg aggcgatggc cgcgctgcgc
      421 gatgccgcgc cgggcttcga cagctgcctg gcgcgcgcgc aggagttcgg gcgccggctc
      481 gatcgctgga tcggacggtc gcgcacgtgg cagcaggacg acggagtcga tgcgccgatg
      541 ccggacgcgg tcgacgcacg ggatggtccc gacgccacgc ccgatccgac cgccgacgcg
      601 ctgccagacc gcggccgcgc gccgcgccaa ccccgctccg gctcgtccgc ggagggcggt
      661 gggctcgccg atggtgagcc ggaaggcgac gtcgccttag gacgatccac cagcgtacat
      721 tggtatgaac tgagtccacg cggcttccgc ctgcagcgca cgccgctcga cgtctccggc
      781 ccgctgcgcg cgcaccgcga gcgttcgcat gcggcgtggg tgttcacgtc ggcgacgctg
      841 tcggtggccg gcggcttcga gcacgtcgcc gagcgcctcg gcctggtcga tccggccacg
      901 ctgctgcagc ccagtccgtt cgactggaac acgcaggcgc tgtgctacct gccgcggcgc
      961 ctgcccgagc cgatggcgcg cgactacacc acggcgctgg tcgatgcgct gatgccggtg
     1021 ctcgaagcct ccggcggccg cgccttcgtg ctgttcgcct cgcaccgcgc gctgcgcgaa
     1081 gccgcggagc tgctgcgcga tggcccgtgg ccgttgttcg tgcagggcga ggcgccgcgc
     1141 caggcgctgc tgcagcggtt ccgcgagtcg ggcaacggcg tgctgctcgg cgcggcgagc
     1201 ttccgcgagg gcgtcgacgt ggtcggcgag gcgctgagcg tggtcgtgat cgacaagctg
     1261 ccgttcgccg cgccggacga tccggtgttc gaggcgcgcc tggatgccgt gcgccggcgc
     1321 ggcggcaatc cgttccgcga cgagcagctg ccgcaggcgg tgatcgcgct caagcagggc
     1381 gtcggccgac tgatccgcag cgagaccgac cgcggcgtgc tggtcctgtg cgacccgcgc
     1441 ctgaccggca agagctacgg ccgcgtgttc ctcgagtcgc tgccggcgtt tccgctgacc
     1501 cgcgacgtcg acgacgtgcg cgcgttcttt gcggcagaat ccgcgccttg gccgcccgga
     1561 gaacgctgat ggacagctcc aagccccgcg tgcacggcat cgggggcgtg ttcttcaagt
     1621 cgcgcgaccc gggcgcgctc tccgcgtggt acgagcgcca cctcgggttt ccggtggcga
     1681 agtggggcgg tgccaagttc gactggcgcc gtgccgacac gggcgcggcg gcgacgacgg
     1741 tgtggtcgcc gttcccggag gacacgggtt atttcgcgcc gggcgacaag cccttcatgc
     1801 tcaacctgcg cgtcgacgac ctcgatggcc tgctcgaggc gctgcgcgcc gaaggctgcc
     1861 aggtgctgga ccggcgcgag gacggcgagt tcggttcctt cggctacgtc gtcgatcccg
     1921 aggggctcgt gctcgagctg tggcagccgc cggccgaagc gggcagcacg ccttgaagct
     1981 gctcgccttc gaaaccgcca ccgaagcctg ttccgtcgcc ctgtggctgg atggcgaggt
     2041 gcgcgagcgc ttcgaactcg cgccgcgccg gcacgcggaa ctggcgttgc cctgggccga
     2101 gcagctgctc gcggaggcgg gcctggcgcg gtcgcagctg gacgcgatcg cgatcggccg
     2161 gggaccgggc gcgttcaccg gcgtgcgcct ggccatcgcg ctcgggcagg ggatcgccct
     2221 cgcgctcgac cggccgctgc tgccggtgtc cacgctggcc gcgctggcgt tcgacgcgcc
     2281 gggcgagcgc atcctcgccg cgatcgacgc gcgcatgggc gaggtctacc tcggtgcctt
     2341 cgcgcgcgac ggcgaggggc tgcgcgcgct cgcggccgaa tgcgtcgccg cgccggacgc
     2401 cgcgccggtg ccggagggcg acggctggtc cgccgtcggc accgggttcg ccgccgcgca
     2461 gggggcgttg caggaacgcc tgcagggccg gctggccggg ctggatgcga tggcgctgcc
     2521 ccacgccgcg gccgtcgcgc ggctgggcgc cagcgcgctc gcccgcggcg agggactggc
     2581 gcccgagcgc gtcgaaccgg cctacctgcg cgacaacgtc gcgctcaccc tggagcagca
     2641 gcaggccctg cgcgcggcca ggcgcggcgc ctgagtctcg atcaccgtcg catcgccgcg
     2701 ccgtcgcgcg acggc
//
LOCUS       DATIQC010000168         2220 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_82069, whole genome shotgun sequence.
ACCESSION   DATIQC010000168 DATIQC010000000
VERSION     DATIQC010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82069"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..1964
                     /locus_tag="VLM17_03520"
                     /pseudo
     CDS             118..1964
                     /locus_tag="VLM17_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342721.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          381 a          812 c          715 g          312 t
ORIGIN      
        1 ggggtccgca tgcttcttcc tgcccgccgt ctgctgccgg tgctgtgcgc actggccctg
       61 tcctcgccag ccttcgaccc gaacgttgcc ttcgcccagg atgccgcgcc gccgccgatg
      121 ctgagcgcgc gggtgcccgc cccggtcgac gcgccctacg cgccgggcac gatccagctg
      181 caggtcgacg ccaccgacct ctcgcagcgc atcttccgca tgcgcgaatc cattcccgcg
      241 agcgccggca cgctgaccct gctgtacccg cagtggctgc ccggcaacca ttccgacagc
      301 ggcccgatcg acaagctggc cggcctcacc ttcaccgccg gcgggcagaa gctcgcgtgg
      361 acgcgcgatc cgctcaacgt ctacgccttc cacgtcgaag tgccgcaggg cgcgacgtcg
      421 gtcgtcgccg actaccagta cctcacctcc accgacagca gccagggccg cgtcgtcatg
      481 acgccatcga tgctcaacct gcagtggaac gccgccgtgc tgtatccggc cggccactac
      541 gcgcgccgca tcgactacgc cgcgagcgtg acctatccgg ccggctggca ggcctacagc
      601 gcgctcgacg tcgagcgccg cgacggcgac accgtgcact accggaccgt gccgctcgac
      661 atcctggtcg actcgccggt gtatgcgggc cgctactaca agacgatcga cctcacgccg
      721 gccggcgcga aggtgccggt gcacctcgac gtgatcgccg acgcggcgaa gttcctcgag
      781 accaggcccg agcaggtgca gcagcaccgc aacctcgtca cccaggcgct caagctgtac
      841 ggcgcgcagc actacgacca ctacgacttc ctgttctcgc tgtccgacca gatgggcggc
      901 aacggcctgg aacaccagcg ctccagcgag gacggcgagg acagcggcta cttcaaggac
      961 tgggatgcga ggtcgggttc agcgacctgc tcgcgcacga gtacacgcat tcgtggaacg
     1021 gcaagtaccg ccgacccgcc gacctgtgga cgcccaacta caacgtgccc atgcaggaca
     1081 gcctgctgtg ggtgtacgag gggcagaccc agtactgggg caacgtgctc gccggccgct
     1141 cgggcatgcg cccgcagcag gcgtcgctgg acgcgctggc gctggtcgcc gccacctacc
     1201 gcgacaaccg cccgggcctg gcctggcgcg cggtgcagga caccaccaac gacccgatca
     1261 tcgcccagcg ccggcccaag ccctaccgca actaccagct gagcgaggac tactactcgg
     1321 ccgggcagat ggtctggctg gaggccgacg tgcgcatccg cgcgctcacc catggcagga
     1381 agtcgctgga cgacttcgcc cgtgcgttct tcggcgtcaa cgacggccag tggcaggtgc
     1441 aggacaccta caccttcgac gacgtggtga aaacgctcga cggcgtcgtg cacgccgact
     1501 gggcgacgtt cctgcgcgac cgcatcgacg gcaaggtgcc gctcaccggc ggcatcgagg
     1561 ccggtggctg gaagctggtc tacgccgacg agcccaacgc ctatgaaaag gcgatggcga
     1621 aggacgccaa gggcgcggcg tccttcacgt attcggccgg gctgtacgtc gccaaggacg
     1681 gcaaggtcgg cgaggtgcgc tgggacagcc cggcgttcaa cgccggcctg ggcagcggca
     1741 tgaccatcgt cgcggtcaac gacctcgaat attccaggga caccctggcc gacgcgatca
     1801 aggcggcgaa gagcgacaag gcgccgatcc gcctgctggt gaaggagttc gaccactacc
     1861 gcacggtcga cctcgactac cacggcggcc tgcgctaccc gcggctggag cgcatcgcag
     1921 ggacgcccga ccacctgtcg gcgatctacg cgccgaagaa gtaagtaggc gcgctgcgcg
     1981 ccggcgcgca gcgacatgcc ggcaaaggcg aagccccatc ggatccgatg gggctttttt
     2041 ttcctgcctg caaccggcgt cgaccgtcct tcagtgcagg ccgaaggcga ccagttcggc
     2101 gccgccgtgc acgctgggcg agaccacccg caccacgccg aggttgcggc agtagtactt
     2161 gtactcgacg tcgcccggcg acagcgccgt cgtctcgcgc gtctcgatgc agccgtaaaa
//
LOCUS       DATIQC010000169         2694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_399996, whole genome shotgun sequence.
ACCESSION   DATIQC010000169 DATIQC010000000
VERSION     DATIQC010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2694
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399996"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..327)
                     /locus_tag="VLM17_03525"
     CDS             complement(85..327)
                     /locus_tag="VLM17_03525"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR64661.1"
                     /translation="MDRVKDKTCVVTGAALGIGHACVVRLAEEGAKVALFDLHDAEGE
                     ALAAGLQARGFDAGYWHVDVSDEPGVKRAIDEVAAR"
     gene            complement(410..>2694)
                     /locus_tag="VLM17_03530"
     CDS             complement(410..>2694)
                     /locus_tag="VLM17_03530"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0043169 - cation binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HSR64662.1"
                     /translation="MLGISVALVIGLTVYQEQKAERALQALRELGSPRARILRDGVPT
                     VVAAPEVVVGDVLLVAEGDRLPADARVLEETDLQVDESLLTGESLPQRKTAEATEDAS
                     RLHASTLVVRGHGLAEVIATGDRTAVGRIGLALRTLRPERTPLQREIRQVVLLFAGLS
                     LAISLVMTGLYVALRGGWLNALLAGLTLAIATIPEEFPVVLTVFLALGAWRMAQQRAL
                     VRRTAAIEALGAITVLCTDKTGTLTENRMRVSALVGGGDSWDGQSPLSPPLRALLRIA
                     TLASPPLTHDPMEQALHAAWAAEPGAGGPLRLVRQYAFSPGCPAVACVWAGADEPDRI
                     AACKGAPEAIARLCGLASARHDALLADAHAMAARGLRVLGVASGRLPADAACPPSIDA
                     LPLAWAGLVAFADPLRAGVPEAVAEARAAGVRVMMLTGDHPETARAIAREAGIDGDQV
                     VLGRELDGADHAGLDLAARVYARVRPEHKLRLVEALKRRGEIVAMTGDGVNDAPALAA
                     AHVGVAMGGRGTDVAREAAAIVLLDDNFATVVRAIRLGRAVYGNLRRTIRYILAVHVP
                     ITGLALLPLLFGGPLVLAPLHVVFIQLIIDPACSLVFERDPPAADAMHRPPRPAGQRM
                     VDLRVLLSTLGQGTVMFCATATVLLLATRAGLPPPQRSALAFTALIAGNLGLILLYRG
                     GGLIRRMPGQRNAAFWIVFAGALALLAMVTWIPPAARAFDFAPPPLRWWLPALVAPLL
                     LGAAMRAAGQLLTASARRHR"
BASE COUNT          375 a         1002 c          985 g          332 t
ORIGIN      
        1 gggaagttgg aggattgttg ggtcaagccc tcgccttcct ggcgtgtgcc gctgggctgg
       61 tgctcgttta tacgggcttc gctctcagcg ggcggcgacc tcgtcgatcg cgcgcttcac
      121 gcccggctcg tccgacacgt cgacgtgcca gtagccggcg tcgaagccgc gcgcctgcaa
      181 accggcggcg agcgcctcgc cctcggcatc gtgcaggtcg aacagcgcga ccttcgcccc
      241 ttcctccgcc agccgcacca cgcaggcgtg gccgatgccg agcgcggcgc cggtgacgac
      301 gcaggttttg tccttcacgc ggtccatgac gggctccctc gggatggtgt tcgcagtacg
      361 cgccggtttg cgccgcgttg ccttgatccc gatcatcgac tcgcccgggt caacggtgcc
      421 ggcgcgcgga cgcggtcagc aactgtccgg ctgccctcat cgcggcgccg agcagcaggg
      481 gcgcgaccag cgccggcaac caccagcgca gcggcggcgg cgcgaagtcg aacgccctcg
      541 cggccggcgg aatccaggtg accatcgcca gcagggccag ggcgcccgcg aagacgatcc
      601 agaaggcggc gttgcgctgg ccgggcatgc gccggatgag cccgccgccg cgatacagca
      661 ggatcagccc gaggttgccc gcgatgagcg cggtgaaggc cagcgcgctg cgctgcggcg
      721 ggggtaggcc agcgcgcgtg gcgagcagga gcaccgtcgc cgtggcacag aacatcaccg
      781 tgccctggcc cagggtcgac agcagcacgc gcaggtcgac catgcgttgg cccgccggtc
      841 gcggcgggcg gtgcatggcg tcggcggcgg gcggatcgcg ctcgaagacc agcgagcagg
      901 ccgggtcgat gatcagctgg atgaacacca cgtgcagtgg cgcgagcacc agcggcccgc
      961 cgaagagcag cggcaacagc gccaggccgg tgatcggcac gtgcaccgcc aggatgtagc
     1021 ggatggtacg gcgcaggttc ccgtagacgg cgcggcccag ccggatcgcg cgcacgaccg
     1081 tggcgaagtt gtcgtccagc agcacgatcg cggccgcttc gcgggcgacg tcggtgccgc
     1141 gcccgcccat cgcgacgccg acgtgcgccg cggcgagcgc gggcgcgtcg ttcaccccgt
     1201 cgccggtcat ggcgacgatc tcgccacgcc gcttcagcgc ctccaccagc cgcaacttgt
     1261 gctcggggcg gacgcgcgca tagacccgcg cggccaggtc caggcccgcg tggtcggcac
     1321 cgtccagttc ccgccccagc accacctggt cgccgtcgat gccggcctcc cgcgcgatcg
     1381 cgcgcgcggt ttcgggatgg tcaccggtga gcatcatcac gcgcacgccg gccgcgcgcg
     1441 cctcggcgac cgcctccggc acgcccgcgc gcaacgggtc ggcgaaggcg accaggcccg
     1501 cccaggcgag cgggagcgcg tcgatggatg gcggacaggc ggcgtccgcc ggcaggcgcc
     1561 cgctggcgac gccgagcacc cgcagaccac gcgccgccat ggcgtgcgcg tcggcgagca
     1621 gcgcatcgtg gcgcgcggac gccagcccgc acaggcgggc gatggcctcg ggtgcgccct
     1681 tgcatgccgc gatgcggtcc ggctcgtccg cgccggccca gacgcaggcc acggccgggc
     1741 aaccggggga aaacgcatac tgccgcacca gccggagcgg gccgccggcg ccgggctcgg
     1801 cggcccacgc ggcgtgcagc gcctgttcca tcggatcgtg cgtcagcggc gggctcgcca
     1861 gcgtggcgat ccgcaacaat gcgcgcagcg gcggtgacag cggcgactgg ccgtcccagc
     1921 tgtcgccgcc gccgaccagc gccgacaccc gcatgcggtt ctcggtgagc gtgccggtct
     1981 tgtcggtgca cagcacggtg atcgcgccga gcgcctcgat ggccgccgtg cgccgcacga
     2041 gcgcacgctg ctgtgccatc cgccaggcgc cgagcgcgag gaacaccgtc agcaccaccg
     2101 ggaactcctc ggggatggtc gcgatggcca gcgtcagccc ggcgagcagg gcgttcagcc
     2161 acccgccccg cagggccacg tagaggcccg tcatcaccag gctgatcgcc agcgacagtc
     2221 cggcgaacag caggaccacc tggcggatct cgcgttgcag cggcgtgcgc tcggggcgca
     2281 acgtgcgcaa cgcgaggccg atgcggccga ccgcggtgcg gtctccggtc gcgatcacct
     2341 cggccaggcc gtggccgcgg accaccaggg tgctggcatg cagccgcgat gcgtcttccg
     2401 tcgcttctgc ggtcttgcgc tgcggcaggg attcgccggt gagcagggac tcgtccacct
     2461 ggaggtccgt ctcctccagg acgcgggcgt cggcgggcag ccggtcgcct tccgccacca
     2521 gcagcacgtc gcccaccacg acctccggcg cggcgaccac cgtgggcacg ccgtcgcgca
     2581 ggatccgcgc ccggggactg ccgagttcgc gcagggcctg cagcgcgcgc tcggccttct
     2641 gctcctggta cacggtcagt ccgatgacca gcgccaccga aatgccgagc atcg
//
LOCUS       DATIQC010000170         1755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_471087, whole genome shotgun sequence.
ACCESSION   DATIQC010000170 DATIQC010000000
VERSION     DATIQC010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471087"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VLM17_03535"
     CDS             complement(<1..215)
                     /locus_tag="VLM17_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR64663.1"
                     /translation="MSHPRPVALVTGAARRIGAAIARALHADGYDLALHCRDSRADAD
                     VLAAELERARPGSTLVLEADLAAFDRLP"
     gene            271..1452
                     /locus_tag="VLM17_03540"
     CDS             271..1452
                     /locus_tag="VLM17_03540"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HSR64664.1"
                     /translation="MSAPSPDADALAHSERLRALIQEQVFAAGGALPFSRFMELALYA
                     PGLGYYSAGATKFGAAGDFVTAPELGPLFAACVADALAPVLRQLGARAVFVELGGGSG
                     AFAEVALKRLMALDALPDRYCILEPSADLRERQRERLRRHLSPLLFDLVEWLDGPLQE
                     AWDGVLFANEVIDALPTPRFTIRDGEVMEEHVGLDGEGRFVRSDRPADALLAAAVRHL
                     ERYLDTRFADGFRSELLPQLPYWLQAVIGGMQRGALLFVDYGYVRREYYAAERSDGTL
                     RAFRRHQVSGDVFAQPGLQDITASVDFTALAEAGTNAGFDFAGYCAQASFLIGNGLEQ
                     RLAEAEAKARDEAALYRLRQEAKQLTLPGGMGERFQAMGFARDVEFGGAFLLGDMSWR
                     L"
     gene            1449..>1755
                     /locus_tag="VLM17_03545"
     CDS             1449..>1755
                     /locus_tag="VLM17_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HSR64665.1"
                     /translation="MIGQGATKPLRHARRWLLLWWLAVAAVALVELLPAMLLPPVPAG
                     GDKLEHLAAYGALAFAAVQVFERRVLWRIGLGLAALGMALEIAQGALTATRSFDLHDE
                     "
BASE COUNT          210 a          624 c          662 g          259 t
ORIGIN      
        1 ggcagccggt cgaaggcggc gaggtcggcc tcgagcacca gcgtgctgcc ggggcgcgcc
       61 cgttccagct ccgcggccag cacgtcggcg tccgcgcgcg agtcgcggca gtgcagggcg
      121 aggtcgtaac cgtcggcatg cagcgcgcgc gcgatcgccg cgccgatccg gcgcgcggcg
      181 ccggtgacca gggcaacggg acgcgggtgg ctcatcagct tttctcccgc cagcggctat
      241 gctggcgatt gtcgtcgcaa tcgcgtgcct atgtccgccc cgtcccccga tgccgatgcg
      301 ctggcgcaca gcgagcgcct gcgcgcgctg atccaggagc aggtgttcgc cgcgggcggt
      361 gcactgccgt tctcgcgttt catggagctg gcgctgtacg cgcccggcct gggctactac
      421 agcgccggcg cgaccaagtt cggcgcggcc ggcgacttcg tcaccgcccc cgagctcggg
      481 ccgctgttcg ccgcctgtgt cgcggacgcg ctggccccgg tgctgcgcca gctcggcgcg
      541 cgggccgtgt tcgtcgagct gggcggcggc agcggcgcgt tcgccgaggt cgcgctcaag
      601 cggctcatgg cgctggacgc gctgccggac cgctactgca tcctggaacc cagcgccgac
      661 ctgcgcgaac gccagcgcga gcgcctgcgg cggcacctga gcccgctgct gttcgacctg
      721 gtcgaatggc tggatggccc gctgcaggag gcgtgggacg gcgtgctgtt cgccaacgag
      781 gtgatcgacg ccctgccgac gccgcgtttc accatccgcg acggcgaggt catggaagaa
      841 cacgtcgggc tcgacggcga gggccgcttc gtgcgcagcg accgtccggc agacgcgctg
      901 ctcgccgccg cggtccgcca tctcgagcgc tacctcgaca cccgcttcgc cgacggcttc
      961 cgcagcgagt tgctgccgca gctgccctac tggctgcagg cggtgatcgg cggcatgcag
     1021 cgtggggcgc tgctgttcgt cgactacggc tacgtgcgcc gcgagtatta cgcggccgaa
     1081 cgcagcgacg gaaccctgcg cgcgttccgc cgccaccagg tctccggcga cgtgttcgcg
     1141 cagccgggcc tgcaggacat caccgcgtcg gtggacttca ccgcgctggc cgaggccggc
     1201 accaacgcgg gcttcgattt cgccggctac tgcgcgcagg ccagcttcct gatcggcaac
     1261 ggcctggagc agcggctggc ggaagccgag gcgaaggcgc gcgacgaggc cgcgctgtac
     1321 cggctgcggc aggaggccaa gcagctgacc ctgccgggcg ggatgggcga acgcttccag
     1381 gcgatggggt tcgcgcgcga cgtcgagttc ggcggcgcgt tcctgctcgg cgacatgagc
     1441 tggcggctgt gatcggtcag ggcgcgacca agccgttgcg gcatgcgcgg cgctggctgc
     1501 tgctgtggtg gctggcggtg gcggcggtcg cgctggtcga actgctgccg gcgatgctgc
     1561 tgccgccggt gcccgccggc ggcgacaagc tcgagcacct cgccgcctac ggcgcgctcg
     1621 cgttcgcggc ggtgcaggtg ttcgagcggc gcgtgctgtg gcggatcggg ctcggcctcg
     1681 ccgcgctcgg catggcgctg gaaatcgccc agggcgcgct gaccgcgacg cgcagcttcg
     1741 acctccacga cgaac
//
LOCUS       DATIQC010000171         1888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_11703, whole genome shotgun sequence.
ACCESSION   DATIQC010000171 DATIQC010000000
VERSION     DATIQC010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11703"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VLM17_03550"
     CDS             <1..658
                     /locus_tag="VLM17_03550"
                     /inference="COORDINATES: protein motif:HMM:NF024248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR64666.1"
                     /translation="QQRLLRQLLQAGAAGTAVETLCERLRVSHNAVRQHLTALIGHGV
                     VERAPSMPTGGRPQARFALTAEGRELFPRNYGAIAGALVSQLHARLGEAEVGALLQDL
                     GATVAATQPALQPGDGADGMARALAQRLDALGYEAVPARHGEEWQVEAFNCVFHALAR
                     QHPQVCKFDLAFMEAASGRRIHHMECIVRGGHVCRFRIGAPKAGQPRGDEPAPDAGIA
                     "
     gene            756..1433
                     /locus_tag="VLM17_03555"
     CDS             756..1433
                     /locus_tag="VLM17_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009596742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR64667.1"
                     /translation="MDALLETVEQETGPDPQWSILWLHGLGADGHDFAPVVPELVRPD
                     WPALRFVFPHAPVRAVTINGGVRMRAWYDIRALDLAQRADESGVNESIALVEALVARE
                     AARGVPAHRLILAGFSQGGAITLASGLLRATPFAGLVALSAYLPMHDRAAQRLATGAN
                     AQPVFMAHGTLDPVVPYAAGEASARVLAALGFQVDWHRYAMPHSVCAEEIRDLGDWLS
                     RRFAQAG"
     gene            1435..>1888
                     /locus_tag="VLM17_03560"
     CDS             1435..>1888
                     /locus_tag="VLM17_03560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSR64668.1"
                     /translation="MEPARAGEPWLPDLCRLPRLATMFGVAELVVLVLAFAPDGGAHW
                     NVQRFLSASGFALWLALTIAVLLCVSRRPLSRLPVALGAAAAVAGAAWIALLGAAMLY
                     QLDRSLGTQLVPAKVQLGQFAVGSAAVAALITGVVLRYLYVIDGWQAQV"
BASE COUNT          224 a          695 c          709 g          260 t
ORIGIN      
        1 ccagcagcgg ttgctccggc agctgctgca ggccggcgcc gcggggaccg cggtggaaac
       61 gctctgcgag cgcctgcgcg tcagccacaa tgcggtgcgc cagcacctga ccgcgctgat
      121 cggccacggc gtggtcgaac gcgcgccgtc gatgcccacc ggcggccggc cgcaggcgcg
      181 gttcgcgctc accgccgaag gacgtgaact cttcccgcgc aactacggcg cgatcgccgg
      241 cgcgctcgtc tcgcaactgc acgcgcggct gggcgaggcc gaggtgggcg cgttgctgca
      301 ggacctcggc gcgaccgtcg ccgccaccca gcccgcgctg cagcccggcg atggcgcgga
      361 cgggatggcg cgcgcgctcg cgcagcggct ggacgcgctc ggctacgaag cggtcccagc
      421 gcgccacggc gaggagtggc aggtggaggc cttcaactgc gtcttccacg cgctcgcgcg
      481 ccagcacccg caggtatgca agttcgacct ggccttcatg gaagcggcca gtggtcggcg
      541 catccaccac atggagtgca tcgtgcgcgg cggccacgtc tgccgcttcc gcatcggcgc
      601 gccgaaggcc ggccagccgc gcggcgacga gccggcgccg gacgcgggaa tcgcatagcg
      661 cgaacgggtg tcgtgcacgc acatccggtc ggccgccgcg gcactcgcgg ccgcgcgggt
      721 tgacgccggc cccgcgcccg tcgcccaatg cggcgatgga cgcactgctc gaaaccgtcg
      781 aacaggaaac cgggcccgac ccgcagtgga gcatcctctg gctgcacggc ctcggcgccg
      841 acgggcacga cttcgcgccg gtcgtgccgg agctggtgcg cccggactgg ccggcgctgc
      901 gcttcgtgtt cccgcatgcg ccggtgcgcg ccgtgacgat caacggcggc gtgcgcatgc
      961 gcgcctggta cgacatccgc gccctggacc tggcccagcg cgcggacgaa agcggggtca
     1021 atgaatcgat cgcgctggtc gaggcgctgg tcgcgcgcga agcggcgcgc ggcgtgcccg
     1081 cgcaccgcct gatcctcgcc gggttctcgc agggcggggc gatcacgctg gcctccggcc
     1141 tgttgcgggc gacgccattc gccgggctgg tcgcgctgtc ggcatacctc ccgatgcacg
     1201 accgcgccgc gcagcgcctc gccaccggcg cgaatgcgca gccggtgttc atggcgcacg
     1261 ggaccctcga tccggtggtg ccctacgcgg cgggcgaggc gagcgcgcgc gtgctcgccg
     1321 cgctcggctt ccaggtcgac tggcaccgct acgcgatgcc gcactcggtg tgcgccgagg
     1381 agatccgcga cctcggcgac tggctgtcgc gccgtttcgc ccaagccggc tgacatggag
     1441 cccgcgcgcg ccggcgaacc gtggttgccg gacctgtgcc ggctgccgcg gctggcgacg
     1501 atgttcggcg ttgccgaact ggtcgtgctg gtgctcgcct tcgcgcccga cggcggcgcg
     1561 cactggaacg tgcagcgctt cctgtccgca agcggcttcg cgctgtggct ggcgctgacc
     1621 atcgccgtgc tgctgtgcgt gtcgcggcgt ccgctctcgc gcctgccggt ggcactcggc
     1681 gccgcggcgg cggtggcggg cgcggcatgg atcgcgctgc tcggcgcggc gatgctctac
     1741 cagctcgacc gcagcctcgg cacccagctg gtgccggcga aggtgcaact ggggcagttc
     1801 gccgtcggca gcgcggcggt cgcggcgctg atcaccggcg tggtgctgcg ctacctgtac
     1861 gtcatcgacg gctggcaggc gcaggtgc
//
LOCUS       DATIQC010000172         7693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_329504, whole genome shotgun sequence.
ACCESSION   DATIQC010000172 DATIQC010000000
VERSION     DATIQC010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7693
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329504"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..233)
                     /locus_tag="VLM17_03565"
     CDS             complement(15..233)
                     /locus_tag="VLM17_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HSR64669.1"
                     /translation="MSAMDLEARLVELETRLAFQESTLAELGEAMAQMRIENARYADM
                     LRRVLEELKAGRGAFSADPATEPPPPHY"
     gene            complement(230..1588)
                     /locus_tag="VLM17_03570"
     CDS             complement(230..1588)
                     /locus_tag="VLM17_03570"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HSR64670.1"
                     /translation="MRVTIFGTGYVGLVTGTCLAEVGHDVVCVDVDQAKIDGLNRGAI
                     PIYEPGLEPMVKANHAEGRLHFTTDAAAGIAHGDIVFIAVGTPPDEDGSADLKYVLAV
                     ARTIGTHLRKPAVVVDKSTVPVGTADKVRATIAQALQARGADVAFDVVSNPEFLKEGA
                     AVEDCMRPDRIVIGSDSPAAIDKLRRLYAPFNRSHERIVSMDVRSAELTKYAANAMLA
                     TKISFMNEISCIAEQVGADIEHVRQGIGSDPRIGWHFIYPGAGYGGSCFPKDVQALAR
                     IAQQNGCEPRLLDAVEAVNHAQKGHLFELVQRHYDLGEDEGVRGKTFAVWGLAFKPNT
                     DDMREASSRRLLAQLWEAGATVRAYDPEAMDEARRIFGERDDLVFCESAQDAVQGSDA
                     LVVVTEWKQFRSPDFAKLAAALHDRVVFDGRNLYEPAEVEAADLAYYGIGRGRSVRQP
                     AA"
     gene            complement(1703..2497)
                     /locus_tag="VLM17_03575"
     CDS             complement(1703..2497)
                     /locus_tag="VLM17_03575"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF013509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSR64671.1"
                     /translation="MNLLPRVTVAAVAATGLALALAACNKPASPEAQKSVAEAKGSLP
                     AGNVAGLPTEKDQDSYMVGMALGKQLLPMKDELDLDVLMKAVRSTLKGEKLLLTEQQA
                     MQVGESFGQKMQAKEIAKMMAEAKKNADAGQAFLAANAKKPGVKSTASGLQYQVITEG
                     TGPKPQATDTVKVNYKGALLDGKVFDDSSQHGGPAEIPLQAVVPGWREGLMLMPVGSK
                     YRLWIPGNIGYGDKVPPGAPIGPNATLVFDVELLDIAKPAPAQPGK"
     gene            complement(2547..3482)
                     /locus_tag="VLM17_03580"
     CDS             complement(2547..3482)
                     /locus_tag="VLM17_03580"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HSR64672.1"
                     /translation="MKSLLRGAAAFLLAFAGLAPNARAADVAPLATDRAKASYMVGMD
                     VGHSLTQVAPDLDLAAFEKAVRNAFAGGKPLVSEAQAKPLGEALMQRMAVRSGRAPAG
                     TSEPAVSKEQAGYLVGADVGRSLGPIKDEIDLPVMMQALRTVLAKGKPLLSEDEANAV
                     RTAFSQQVQGKVQAAAAAQAGRNAAEGVAFLAGNKAVKGVYTTPSGLQYMVLRQGAGP
                     RPKPGDRVRVNYEGRLLDGSVFDSSYARGEPAEFGLDQVIAGWSEGVTLMPVGSKYRF
                     WIPANLAYGEKGTPGGPIGPNSTLQFDVELMDILQ"
     gene            3714..3980
                     /locus_tag="VLM17_03585"
     CDS             3714..3980
                     /locus_tag="VLM17_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64673.1"
                     /translation="MTRKLLRTMTALSATATVFTVLLLAARPVAPAPLPAALAVDAAQ
                     AFDLGVDAEADGPALRQRHHLHRARALLALPYFSFAQGLRRSRS"
     gene            3984..4352
                     /locus_tag="VLM17_03590"
     CDS             3984..4352
                     /locus_tag="VLM17_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HSR64674.1"
                     /translation="MNAIQWSDGAPIYRQLKERVIAMMLDGVLKPGDALPSVRQVAAE
                     YQLNPITVSRAYQELADEALVEKRRGLGMYVTEEAAKKLLVNERDRFLREEWPQVLER
                     IQRLGLSTEDLLAAGKAGAR"
     gene            4349..5251
                     /locus_tag="VLM17_03595"
     CDS             4349..5251
                     /locus_tag="VLM17_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019337360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR64675.1"
                     /translation="MNAPFREDATVEATGAPVVVARHLRKAYKNKVALDGTAFEIPAG
                     RIVGLIGPNGAGKTTALKAMLGLIPFEGELRVLGRDPRTERDALMQDVCFIADVAVLP
                     RWMRVREAIEFVAGVHPRFDRARCERFLANTGLKPQMRVRELSKGMIVQLHLALVMAI
                     DARLLVLDEPTLGLDILYRKQFYQRLLEDYFDEDKTIVVTTHQVEEIEHILTDVMFIR
                     DGRIVLDTPMDVLGERYTEVLVGADHLDAARALRPVDERSLPFGKTVMLFDGAPRAQL
                     AGLGETRVPGLADLFVAVMKGTYA"
     gene            5248..6282
                     /locus_tag="VLM17_03600"
     CDS             5248..6282
                     /locus_tag="VLM17_03600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014037765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64676.1"
                     /translation="MNAMTDTRHAPVAHPTHKFKLLLRREFWEHRGGFLWAPVVAGAI
                     FLLLSTMGILVAEVAARRAASHGDLMFDGQHVRINGLDLAAITSKMTPEDARQLAGGI
                     DLSLLMASSWPFIVLAFVVFFYCLGALYDERKDRSVLFWKSLPVSDAETVLSKVASAT
                     VVAPVLAAGAALATMLGFLVVVSLFVLVHGGNPLRLLWGPADPFELATQLVASVPVYA
                     LWSLPTVGWLLLCSAWARSKPFLWAIMIPVFAGIFVSWFDLMHLFNLESAWFWKNVVA
                     RLLLSGVPGSWMRLDNPEHLQGPAAVVHLINLRATWSALLTPQLWIGTGAGAAMIAVA
                     IRLRRWRDDN"
     gene            6309..6947
                     /locus_tag="VLM17_03605"
     CDS             6309..6947
                     /locus_tag="VLM17_03605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64677.1"
                     /translation="MSRKHIAFLFAALLPFASHAGPRPEAGRDLDESRRELRAGMAQE
                     RARLDNGNLSLGDGPHFGKGDGDRVAKRKTLPKGEITPGGDLLIDGKAVAIDAGQRRQ
                     LLDYRAQVIALAKAGIDAGERAGLLAIDATDVSLFRLIAGGLSGSLERRVQATVQQEI
                     QPAVLQICRRLPQLRASQQALAASVPEFRPYATLEDDAGDCERDVRNELATR"
     gene            6971..>7693
                     /locus_tag="VLM17_03610"
     CDS             6971..>7693
                     /locus_tag="VLM17_03610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64678.1"
                     /translation="MNTTRLAPLLLLALPFLGACERPHANAPANAPVAGSTGAPPETM
                     LGKTVASAIEKARHELENGNIDLSHGIKVDVGDRGRHFEIGGNGHDGRAKAEITPQGD
                     LLLDGKPVDVTPAQRALLLQYRQRIIAIAEAGMAVGVKGADLAGKALVETFSGLMHGD
                     ADAAGKRIEAEGEKLKADARRICAQLPGMLQAQQQLAASLPAFQPYATMDQHDVDDCM
                     KDDRGVAVTDGGNAFGQQVQQTV"
BASE COUNT         1093 a         2768 c         2648 g         1184 t
ORIGIN      
        1 cgcgccgctt gcgatcagta atgcggcggt ggcggctcgg tggccggatc ggcggagaac
       61 gcgccgcgcc cggccttgag ctcctccagc acgcgccgca gcatgtcggc gtaacgcgcg
      121 ttctcgatcc gcatctgcgc catcgcctcg ccgagttcgg caagcgtgct ttcctggaac
      181 gcgagccgcg tctccagttc caccagtcgc gcttcgaggt ccatcgcgct catgcggccg
      241 gctggcgcac cgagcggccg cggccgatgc cgtagtacgc caggtccgcc gcttccactt
      301 cggccggctc gtacaggttg cggccgtcga acaccacgcg gtcgtgcagc gcggccgcga
      361 gtttcgcgaa atcggggctg cggaactgct tccactccgt caccaccacc agcgcgtcgc
      421 tgccctgcac ggcgtcctgc gcggattcgc agaacaccag gtcgtcgcgc tcgccgaaga
      481 tgcgccgcgc ctcgtccatc gcctcgggat cgtaggcgcg cacggtcgcg cccgcttccc
      541 acagctgcgc cagcaggcgg cggctggaag cctcgcgcat gtcgtcggta ttcggcttga
      601 acgccaggcc ccacaccgcg aacgtcttcc cgcgcacgcc ttcgtcctcg ccgaggtcgt
      661 agtggcgctg gacgagctcg aacaggtgtc ccttctgcgc gtggttcacc gcttccacgg
      721 cgtcgagcag gcgcggttcg cagccgttct gctgggcgat gcgcgcgagg gcctgcacgt
      781 ccttggggaa gcacgagccg ccgtagccgg cgcccgggta gatgaagtgc cagccgatgc
      841 gaggatccga gccgatgccc tggcgcacgt gctcgatgtc ggcgccgacc tgctcggcga
      901 tgcatgagat ctcgttcatg aaggagatct tggtcgccag catggcgttc gccgcgtact
      961 tggtgagctc ggccgagcgc acgtccatgc tgacgatgcg ctcgtggctg cggttgaacg
     1021 gcgcgtacag gcgccggagc ttgtcgatgg cggccgggct gtcggagccg atcacgatgc
     1081 ggtccgggcg catgcagtcc tcgaccgccg cgccttcctt gaggaactcc gggttggaga
     1141 cgacatcgaa ggcgacgtcg gcgccgcgcg cctgcagcgc ctgcgcgatc gtcgcgcgca
     1201 ccttgtcggc ggttcccacc ggaacggtgg atttgtcgac caccaccgcc ggtttccgca
     1261 ggtgcgtgcc gatcgtcctc gccaccgcca gcacgtactt caggtcggcg ctgccgtcct
     1321 cgtccggcgg cgtgccgacc gcgatgaaga cgatgtcgcc atgcgcgatg cccgccgccg
     1381 cgtcggtggt gaaatgcagg cggccttcgg catggttggc cttcaccatc ggctcgaggc
     1441 ccggctcgta gatcgggatc gcgccgcggt tgaggccgtc gatcttggcc tggtcgacat
     1501 cgacgcagac gacgtcgtga ccgacttcgg ccaggcaggt accggtgacg agcccgacgt
     1561 agccggtgcc gaagatggtg acgcgcatgc agtgtcctgg tgaatggggc cgcgtagtgt
     1621 cgcaacccgc ggcgtcacgc cggggtgagc ccgggagggc gcgggcgcgg cgggcatcgc
     1681 ccgcgcgccc gcgcggcgac gcttacttgc ccggctgcgc cggggccggc ttggcgatgt
     1741 cgagcagctc gacgtcgaac accagcgtcg cgttcgggcc gatcggcgcg cccggcggca
     1801 ccttgtcgcc gtaaccgatg ttgccgggga tccacagccg gtacttgctg cccaccggca
     1861 tcagcatcag gccctcgcgc cagcccggca ccaccgcctg cagcgggatc tcggcggggc
     1921 cgccgtgctg cgaggagtcg tcgaacacct tgccgtcgag cagcgcgccc ttgtagttca
     1981 ccttgacggt gtcggtggcc tggggcttgg ggccggtgcc ttcggtgatg acctggtact
     2041 gcagccccga ggcggtgctc ttcacgcccg gcttcttcgc gttcgcggcg aggaaggcct
     2101 ggccggcgtc ggcgttcttc ttcgcctccg ccatcatctt ggcgatctcc ttggcctgca
     2161 tcttctggcc gaaggattcg ccgacctgca tcgcctgctg ctcggtcagc agcagcttct
     2221 cgcccttcag cgtgctgcgc accgccttca tcagcacgtc gaggtcgagt tcgtccttca
     2281 tcggcagcag ctgcttgccc agcgccatgc cgaccatgta gctgtcctgg tccttctcgg
     2341 tcggcaggcc ggcgacgttg cccgcgggca ggctgccctt ggcttcggcg acggacttct
     2401 gcgcttcggg cgaggcgggc ttgttgcagg cggcgagcgc gagggcgagg ccggtcgcgg
     2461 ccacggcggc aacggtcacg cggggaagca ggttcatgcg ggagctccag gcggttcgga
     2521 cgcgcgggcg cgcggccgtg cagcggttat tgcaggatat ccatcagttc gacgtcgaac
     2581 tgcagggtcg aattcggacc gatcgggccg ccgggggttc ccttctcgcc ataggcgagg
     2641 ttggcgggaa tccagaagcg gtacttgctg cccaccggca tcagcgtcac gccctcgctc
     2701 cagccggcga tgacctggtc gaggccgaac tcggcgggtt cgccacgcgc gtaggaactg
     2761 tcgaacacgc tgccgtcgag cagcctgccc tcgtagttga cgcgcacgcg gtcgcccggc
     2821 ttcgggcgcg ggccggcgcc ctggcgcagc accatgtact gcaggcccga cggggtggtg
     2881 tagacgccct tgacggcctt gttcccggcg aggaaggcga cgccctcggc ggcgttcctg
     2941 ccggcctgcg ccgcggcggc ggcctgcacc ttgccctgga cctgctgcga gaacgccgtg
     3001 cggacggcgt tcgcctcgtc ctcgctgagc agcggcttgc ccttggccag cacggtgcgc
     3061 agcgcctgca tcatcaccgg caggtcgatc tcgtccttga tcgggccgag cgagcggccg
     3121 acgtcggcgc cgacgaggta gcccgcctgc tccttcgaca ccgccggctc gctggtgccg
     3181 gccggcgcgc ggccgctgcg cacggccatg cgctgcatga gcgcctcccc gagcggcttg
     3241 gcctgcgctt cggacaccag cggcttgccg ccggcgaagg cgttgcgcac ggccttctcg
     3301 aacgccgcga ggtccaggtc cggggcgacc tgggtgagcg aatggcccac gtccatgccg
     3361 accatgtagc tggccttggc gcgatcggtg gccagcggcg cgacgtcggc ggcgcgggcg
     3421 ttcggggcga ggccggcgaa cgcgagcagg aacgcggcgg cgccgcgcag cagggacttc
     3481 atcggaactc cttggcaaca ccgcggacgc ggtgacaaaa gcgcggctcg cgcgcaagcc
     3541 gttcattgtc gcggcggcct ccggatcgcg caatgcggcg gctccagggc ggaccgcgcc
     3601 ccgggcgccc ccgcccgccc ccctgccatc agttggggga ccggacgctt gaccgctcgt
     3661 gtcttggtgt tatagttgca tacaacacca gttaccccag caggacgttc gccatgacgc
     3721 gcaagctcct ccgcacgatg acggccctct cggcgaccgc caccgtgttc accgtgctgc
     3781 tgctggccgc gcgccccgtc gcgcccgcgc cgctgccggc cgcgctggcc gtcgacgcgg
     3841 cccaggcctt cgacctgggc gtcgacgccg aagccgatgg ccccgccctc cgccagcgcc
     3901 accacctgca ccgcgcccgc gcgctgctgg cgctgcccta cttctcgttc gcgcagggcc
     3961 tgcgccgcag ccggagctga gccatgaatg cgatccagtg gagcgacggc gctccgatct
     4021 accgccagct caaggagcgc gtcatcgcga tgatgctcga cggcgtgctc aagcccggcg
     4081 acgccctgcc ctccgtgcgc caggtcgccg ccgagtacca gctcaacccc atcaccgtct
     4141 cgcgcgccta ccaggaactg gcggacgagg ctcttgtcga gaaacgccga ggactgggca
     4201 tgtacgtcac cgaagaagct gcgaagaagc tgctcgtcaa tgaacgcgac cgcttcctgc
     4261 gcgaggagtg gccgcaggtg ctcgagcgca tccagcgcct cggcctgtcg accgaggacc
     4321 tgctggcggc cggcaaggcg ggtgcgcgat gaacgccccc ttccgcgaag acgccaccgt
     4381 ggaggcgacg ggtgcgcccg tcgtggtcgc gcgccacctg cgcaaggcct acaagaacaa
     4441 ggtcgcgctg gacggcaccg ccttcgagat ccccgccggc cgcatcgtcg gcctgatcgg
     4501 tccgaacggc gccggcaaga ccaccgcgct caaggcgatg ctcggcctga tcccgttcga
     4561 gggcgagctg cgcgtgctcg gccgcgatcc gcgcaccgaa cgcgacgcgc tgatgcagga
     4621 cgtctgcttt atcgccgacg tcgccgtgct gccgcgctgg atgcgcgtgc gcgaggcgat
     4681 cgagttcgtc gcgggcgtgc atccgcgctt cgaccgcgcc cggtgcgagc gtttcctcgc
     4741 caacaccggc ctcaagccgc agatgcgggt gcgcgagctg tccaagggca tgatcgtcca
     4801 gctgcacctg gcgctggtga tggcgatcga cgcgcgcctg ctggtgctcg acgagccgac
     4861 cctcggcctc gacatcctct atcgcaagca gttctaccag cgcctgctgg aggactactt
     4921 cgacgaggac aagaccatcg tggtgaccac ccaccaggtc gaggagatcg aacacatcct
     4981 caccgacgtc atgttcatcc gcgacggcag gatcgtgctg gacacgccga tggacgtgct
     5041 cggcgagcgc tacacggaag tgctcgtcgg cgccgaccac ctcgacgccg cgcgcgcgct
     5101 caggccggtc gacgagcgct ccctgccttt cggcaagacc gtgatgcttt ttgacggcgc
     5161 gccccgcgcg cagctggccg gactcggcga aacccgcgtg ccgggcctgg ccgacctgtt
     5221 cgtcgccgtg atgaagggaa cctacgcatg aacgccatga ccgacacccg ccatgcgccg
     5281 gtcgcgcatc cgacgcacaa gttcaagctg ctgctgcggc gcgagttctg ggaacaccgc
     5341 ggcggcttcc tgtgggcgcc cgtggtcgcc ggggcgatct tcctgctgct ctcgacgatg
     5401 ggcatcctcg tggccgaggt cgccgcgcgg cgcgcggcca gccacggcga cctgatgttc
     5461 gatggccagc acgtgcggat caacggcctc gacctggccg cgatcacctc gaagatgacc
     5521 cccgaggacg cccgccagct cgccggcggc atcgacctga gcctgctgat ggcctcgagc
     5581 tggcccttca tcgtgctggc gttcgtggtg ttcttctact gcctcggcgc gctgtacgac
     5641 gagcgcaagg accgcagcgt gctgttctgg aagtcgctgc cggtgtcgga tgccgaaacc
     5701 gtgctgtcga aagtggcgag cgcgacggtg gtggcgccgg tgctggcggc cggtgcggcg
     5761 ctggcgacga tgctcgggtt cctggtcgtg gtaagcctgt tcgtgctggt ccatggcggc
     5821 aacccgctgc gcctgctgtg gggcccggcc gatccgttcg agctcgccac ccagctggtg
     5881 gccagcgtcc ccgtgtacgc gctgtggtcg ctgccgacgg tcggctggct gctgctgtgc
     5941 tcggcctggg cgcgcagcaa gccgttcctg tgggcgatca tgatcccggt gttcgccggc
     6001 atcttcgtca gctggttcga cctcatgcac ctgttcaacc tcgagtcggc ctggttctgg
     6061 aagaacgtcg tggcccgcct gctcctcagc ggcgtgccgg ggagctggat gcgcctggac
     6121 aacccggaac acctccaggg cccggccgcc gtcgtgcacc tgatcaacct gcgcgcgacg
     6181 tggtccgcgc tgctgacgcc gcagctctgg atcggcacgg gagccggcgc cgcgatgatc
     6241 gccgtcgcca tccgcctccg ccgctggcgc gacgacaact gacgccacga ccacgaacga
     6301 ggacgaccat gagccgcaag cacatcgcat tcctgttcgc cgcgctgctg ccgttcgcct
     6361 cgcacgccgg cccgcgcccg gaagcgggcc gcgacctgga cgaatcgcga cgcgaactcc
     6421 gcgccgggat ggcgcaggaa cgggccaggc tcgacaacgg gaacctctcg ctcggcgacg
     6481 gaccgcattt cggcaaggga gacggggacc gggtcgcgaa gcgcaaaacc ctgccgaagg
     6541 gcgaaatcac cccgggcggc gacctgctga tcgacggcaa ggcggtggcc atcgacgccg
     6601 gacagcgtcg gcaactgctg gactaccgcg cgcaggtcat cgccctggcc aaggccggca
     6661 tcgacgccgg cgaacgggcc gggctgctcg cgatcgacgc caccgacgtc tcgctgttcc
     6721 gcctgatcgc cggcggcctc tccggcagcc tcgaacgccg ggtgcaggcc acggtgcagc
     6781 aggagatcca gccggcggtg ctgcagatct gccgccgcct gccgcaactg cgcgcttcgc
     6841 agcaggctct ggccgccagc gtgcccgagt tccggcccta cgcgacgctg gaggatgacg
     6901 ccggcgactg cgaacgcgac gtccgcaacg aactggcaac acgctgaccg actcccggag
     6961 agaccccgcg atgaacacca cccgccttgc cccgctcctc ctgctcgccc tgcccttcct
     7021 cggcgcctgc gagcgtccgc acgcgaacgc gccggccaac gcgcccgtcg ccggttcgac
     7081 gggtgccccc cccgaaacca tgctcggcaa gacggtcgcc agcgcgatcg agaaggcgcg
     7141 ccacgaactg gaaaacggca acatcgacct cagccacggg atcaaggtcg acgtcggcga
     7201 ccgcggccgc catttcgaga tcggcggcaa cggccatgac ggccgggcga aggccgagat
     7261 caccccgcag ggcgacctgc tcctcgacgg caagccggtc gacgtcaccc ccgcgcagcg
     7321 cgcgttgctg ctgcagtacc gccagcggat catcgccatc gccgaagccg gcatggcggt
     7381 cggcgtgaag ggcgcggacc tggccggcaa ggcgctggtc gaaaccttca gcggcctgat
     7441 gcacggcgac gccgacgcgg ccggcaagcg catcgaggcc gagggcgaga agctgaaggc
     7501 cgacgcgcgc cggatctgcg cccagctgcc gggcatgctg caggcccagc agcagctcgc
     7561 cgcgtcgctg ccggcgttcc agccctacgc gacgatggac cagcacgacg tcgacgactg
     7621 catgaaggac gaccgcggcg tcgcggtcac cgacggcggc aacgcattcg gccagcaagt
     7681 gcagcagacc gtg
//
LOCUS       DATIQC010000173         6287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_117487, whole genome shotgun sequence.
ACCESSION   DATIQC010000173 DATIQC010000000
VERSION     DATIQC010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6287
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117487"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..564
                     /locus_tag="VLM17_03615"
     CDS             <1..564
                     /locus_tag="VLM17_03615"
                     /inference="COORDINATES: protein motif:HMM:NF024574.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HSR64679.1"
                     /translation="SLRQAADRNALAARWDALAKPLRSEPRVVAAYADRARALGWDDA
                     APQALEHALSTRWDEGLATRYGALATARPEAGAAQLERWLQAHPRSPALLLALAAIAR
                     AQGDRPRAESLLHRALDEGAGAPAWEELGHGYSQAGDESRARLAYANALRAARGEPVV
                     AIPATAGAPEPITLEARDAHGVPRLRE"
     gene            complement(691..1968)
                     /locus_tag="VLM17_03620"
     CDS             complement(691..1968)
                     /locus_tag="VLM17_03620"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005407589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HSR64680.1"
                     /translation="MLQGRPVAVLGGVRIPFCRQNTAYADVGNLGMSVRTLGALVEKF
                     GLHGQQLGEVALGAVIKHPADWNLGREATLSSGLSPLTPGITLQRACGTSLDAIMLVA
                     NKIATGQIEAGVGGGADTTSDVPIVYGQTFRRRLLRAARGRTVGERVAAFKGFHPREL
                     KPEFPGVAEPRTGKSMGDHCEDMARQWAISRDSQDELAAASHHKLAAAYERGFFDDLV
                     VSFRGVARDNVLRPDTSIEKLATLKPAFDRTSGLGTLTAGNSTPLTDGAAACLVASED
                     WARARGLEPLCRIRDAHVAAVDFVHGEGLLMAPTIAVSEMLARNGLSLQDFDFYEIHE
                     AFAAQVLCTLRAWESEEYCRARLGLDAPLGRIEPAKINPNGSSLATGHPFAATGARIV
                     ATAAKELAQRGGGRCLVSICTAGGMGVVAILER"
     gene            2058..2933
                     /locus_tag="VLM17_03625"
     CDS             2058..2933
                     /locus_tag="VLM17_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64681.1"
                     /translation="MADAAHAPVHLLGALALELAPGSAAGHVALAQADAGALAALVAH
                     DLATFEPRAATLELALVGAHYDAVELLRPGWPLHEQLAQLAARAPRGGDGGRVIAFSA
                     HADALPDALVPSPDHVGGPLRLLPFVLRADDDATAADVGERFERDLLERGMAGAATAL
                     AAQSLFGLQVEHARYLTAHDLAAMVALQYEHAGLGPLWPLLEAALLAPAHEEWLDATP
                     EPLVHYVDGEARIALFSPAAWQARYAPALTDGDQLERHFAHFQARQRQFAAVLGAHGV
                     AVTFVHCGKAEAPEI"
     gene            2992..3567
                     /locus_tag="VLM17_03630"
     CDS             2992..3567
                     /locus_tag="VLM17_03630"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HSR64682.1"
                     /translation="MPPFFDHALRLTWLAMAAYWLWSARSAKPVAQQEPVHVRLLAYW
                     LPLLAAMFLLGPGRWFGSFLREQFVPHTTLVYSLGLALAVGGVALAIHARAVLGRNWS
                     ATVQLKQDHALVTRGAYRWIRHPIYTGLLLLFLGNAVMVGDWRGLFAVAIVFASFWRK
                     LRLEEAWLAAHFGPAYLDYRARTKALLPGLL"
     gene            complement(3643..4104)
                     /locus_tag="VLM17_03635"
     CDS             complement(3643..4104)
                     /locus_tag="VLM17_03635"
                     /inference="COORDINATES: protein motif:HMM:NF024879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper domain-containing protein"
                     /protein_id="HSR64683.1"
                     /translation="MSDIKKDHSIGEGTGAVGGAVAGAAIGSVAGPPGTVIGAVAGGA
                     LGAKAGDKIAEAVNPTDYNRHFESSFRDRPYYASGRDWNDYQPAYQYGYDTYGAYRGQ
                     RFDDVEDQLQRDWDSTRGKSHLAWNEARDAVRDGWHHIERAMPGDFDRDGR"
     gene            complement(4219..6051)
                     /gene="recD"
                     /locus_tag="VLM17_03640"
     CDS             complement(4219..6051)
                     /gene="recD"
                     /locus_tag="VLM17_03640"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019658772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009338 - exodeoxyribonuclease V complex
                     [Evidence IEA];
                     GO_function: GO:0008854 - exodeoxyribonuclease V activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HSR64684.1"
                     /translation="MSLFERLVRDGLLRPLDHALAQALRRLDAGRDTADAVLAGAALA
                     SRAVGEGHAAFDPAQAARIADAPWPAPTEWEAAWRASAWIACPPPDEAAPATPLVLER
                     GLLYLRRYREYERRLAAALRRCAARPLPAPDAAALQPVLRALFPHARADDAQALAATR
                     ALQRALLLVTGGPGTGKTTTIARVLLLLVAQARLAGEDVPRIALAAPTGRAAERMAAS
                     LRAATEGLRRTVGIDPAWCDALPDRAQTLHRLLGVIPDSPRFRHDAAHPLAYDTVVVD
                     EASMVDLPLMCKLAEAVADGARLVLLGDPDQLPSVEAGDVLAAIVDAAGEEPMLSALD
                     AALLGVPAPPATDDLFAAQRPRAALAGHRVHLRRAYRQEEALQLAPLAEAVRSGDPER
                     ALALLRAGTLGGIAFHADAADPLVPALRETLLAPWRELLQAADPAAALALADRARVLT
                     ALREGPQGAGPLNARIEDALAGVQREPYFHGRLLLVTANSARQGLSNGDIGVCLRDDT
                     GAMVAWFAGSAGPRGFHPATLPAHGGAFAMTVHKAQGSEYDSAWLVLPRVDARPLTRE
                     LVYTALTRARRALHLCADEDVLRAALPRRVERVSGLRWRLDEPF"
     gene            complement(6048..>6287)
                     /locus_tag="VLM17_03645"
     CDS             complement(6048..>6287)
                     /locus_tag="VLM17_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009609334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V beta subunit"
                     /protein_id="HSR64685.1"
                     /translation="MAHSGYDLQALLYTLALHRWLHFRLGAEYDYARDFGGVRYLFCR
                     GLALGDGAGVHAWTPAPALLHGLDALFAGQAEQRA"
BASE COUNT          783 a         2354 c         2328 g          822 t
ORIGIN      
        1 tcgctgcgcc aggccgccga ccgcaatgcg ctggccgcgc gctgggacgc gctcgccaag
       61 cccttgcgca gcgagccgcg cgtggtcgcc gcctacgccg accgcgcgcg cgcgctcggc
      121 tgggacgatg ccgctccgca ggcgctcgaa catgcgctct ccacgcgctg ggacgagggc
      181 ctcgccacgc gctacggcgc gctcgccacg gcgcgcccgg aggccggcgc ggcccagctc
      241 gaacgctggc tgcaggcgca tccgcgcagt cccgcgctgc tgctcgcgct ggccgcgatc
      301 gcgcgcgcgc agggcgaccg gccgcgtgcc gaaagcctgc tccaccgcgc gctcgacgaa
      361 ggcgccggcg ctcccgcgtg ggaggagctc ggccatggct attcgcaggc cggcgatgaa
      421 tcgcgcgcgc gcctggccta cgccaacgcg ctgcgcgccg cgcgcggcga gccggtggtg
      481 gcgatcccgg cgaccgccgg cgcgcccgaa ccgatcacgc tggaagcgcg cgacgcccac
      541 ggcgtgccgc gcctgcgcga gtgaagcacg ggcgccgctt ccctgcagga gcggcgccga
      601 gcgcgcctcg cctcgcagcc gagccgcacc cggccgcgga cttccggaac cgtcaccgcg
      661 cgcgcccgtc caccggcgtt cgtcgcggac tcagcgctcc aggatcgcga ccacgcccat
      721 cccgccggcg gtgcagatcg acaccaggca acggccgccg ccgcgctgcg ccagttcctt
      781 ggccgcggtg gcgacgatgc gcgcgccggt ggccgcgaac gggtggccgg tggcgagcga
      841 ggagccgttc gggttgatct tcgccggctc gatgcgcccg agcggggcgt ccagcccgag
      901 ccgcgcgcgg cagtactcct cgctctccca cgcccgcagc gtgcacagca cctgcgcggc
      961 gaacgcctcg tggatctcgt agaagtcgaa gtcctgcagc gacagtccgt tgcgggccag
     1021 catctccgac accgcgatgg tcggcgccat cagcaggcct tcgccatgca cgaaatcgac
     1081 cgcggcgacg tgcgcgtcgc ggatccggca caacggttcg agaccgcgcg cgcgcgccca
     1141 gtcctcggag gcgaccaggc aggcggcggc gccgtcggtc agcggcgtcg agttgccggc
     1201 ggtgagcgtg ccgagcccgg aggtcctgtc gaacgccggc ttgagcgtcg ccagcttctc
     1261 gatcgaggtg tccggccgca gcacgttgtc gcgcgccacg ccgcggaagc tcaccacgag
     1321 gtcgtcgaag aacccgcgct cgtaggcggc cgccagcttg tggtgcgagg ccgccgcgag
     1381 ttcgtcctgc gaatcgcgcg agatggccca ctgccgtgcc atgtcctcgc agtggtcgcc
     1441 catcgacttg ccggtgcgcg gttcggccac gcccgggaac tccggcttga gttcgcgcgg
     1501 atggaagccc ttgaacgcgg cgacgcgctc gccgacggtc cttccgcgcg cggcgcgcag
     1561 cagccggcgc cggaaggtct ggccgtacac gatcggcacg tcggacgtcg tgtcggcgcc
     1621 gccgccgacg ccggcctcga tctggccggt ggcgatcttg ttggcgacca gcatgatcgc
     1681 gtccagcgaa gtgccgcagg cgcgctgcag ggtgatgccc ggcgtcagcg gcgacagtcc
     1741 cgacgacagc gtggcctcgc ggccgaggtt ccagtcggcc ggatgcttga tcaccgcgcc
     1801 gagcgcgact tcgccgagct gctgcccgtg caggccgaac ttctcgacca gcgcacccag
     1861 ggtgcgcacc gacatcccga ggttgccgac gtcggcatag gcggtgttct gcctgcagaa
     1921 gggaatgcgg acgccgccga gcacggcgac gggtcggcct tgcagcatcg gaagtcctcg
     1981 cagcggccgg ccgcgcgcga cgcgacaggc ataatgcggc cgagtgtaaa cccgcaccga
     2041 tgcagggcca atcacgcatg gcggacgccg cgcacgctcc agttcatctt ctcggcgccc
     2101 tcgcgctcga actcgcgccg ggcagcgctg ccggccatgt cgccctcgcg caggccgatg
     2161 ccggcgcgct ggcggcgctg gtggcccacg acctcgccac gttcgagccg cgggcggcga
     2221 cgctggaact cgccctggtc ggtgcccact acgacgcggt cgaactgctg cggcccggct
     2281 ggcccctgca cgaacagctc gcgcagctcg ccgcgcgcgc gccgcgcggt ggcgacggcg
     2341 ggcgggtgat cgccttcagc gcgcatgccg acgccctgcc cgacgcgctg gtgccatcac
     2401 ccgaccatgt cggcgggccg ctgcgcctgt tgccgttcgt gctgcgggcc gacgacgacg
     2461 ccaccgccgc ggacgtcggc gagcgcttcg aacgcgacct gctcgagcgc ggcatggccg
     2521 gcgcggccac cgccctcgcc gcgcagtccc tgttcggcct ccaggtcgaa cacgcccgct
     2581 acctcaccgc gcacgacctc gccgcgatgg tcgcgctgca gtacgagcac gccggcctcg
     2641 gcccgctgtg gccgctgctg gaagccgcgc tgctcgcccc cgcgcacgag gagtggctcg
     2701 acgccacgcc cgaaccgctg gtgcactacg tcgacggcga agcccgcatc gcgctgttct
     2761 cgcccgcggc ctggcaggcg cgctacgccc ccgcactcac cgacggcgac cagctcgaac
     2821 gccacttcgc ccacttccag gcgcgccagc gccagttcgc cgccgtgctc ggcgcgcatg
     2881 gggtggcggt gacgttcgtg cattgcggga aggcggaagc gccggaaatc tgagaccctc
     2941 ggggccttcg ccgcgcgccg cccgcgcacg gcagcaccgc gagctcgcgc catgccgccg
     3001 ttcttcgacc atgccctccg gttgacctgg ctggcgatgg cggcgtactg gctgtggtcg
     3061 gcgcgctcgg ccaagccggt ggcgcagcag gagccggtcc acgtacgcct gctcgcctac
     3121 tggctgccgc tgctggccgc gatgttcctg ctcggcccgg ggcgttggtt cggttccttc
     3181 ctgcgcgagc agttcgttcc gcacacgacg ctggtgtatt cgctggggct ggcgctcgcc
     3241 gtgggcggcg tggcgctggc gatccatgcg cgtgcggtgc tcgggcgcaa ctggagcgcc
     3301 accgtgcagc tcaagcagga ccacgcgctg gtcacccgcg gcgcgtaccg ctggatccgc
     3361 catccgatct acaccggact gctgctcctg ttcctcggca acgcggtgat ggtcggcgac
     3421 tggcgcgggc tgttcgcggt ggcgatcgtg ttcgcttcgt tctggcgcaa gctgcggctg
     3481 gaggaagcat ggctggccgc gcacttcggc cccgcgtacc tcgactaccg ggcgcggacc
     3541 aaggcgctgc tgcccggatt gctctaggcc ggccctccgc cgccgccgaa ccgaaaggaa
     3601 aagccccgct cgtcgcgggg ctttccatcg agcttgcgcg gatcagcgcc cgtcgcggtc
     3661 gaagtcgccc ggcatcgcgc gctcgatgtg gtgccagccg tcgcgcacgg cgtcgcgcgc
     3721 ttcgttccag gccaggtgcg acttgccgcg cgtgctgtcc cagtcgcgct gcagctggtc
     3781 ctcgacgtcg tcgaaacgtt ggccgcggta ggcgccgtag gtgtcgtagc cgtactggta
     3841 ggccggctgg taatcgttcc agtcgcggcc ggaggcgtaa tacgggcggt cgcggaagct
     3901 gctctcgaaa tggcggttgt agtcggtcgg gttgaccgct tcggcgatct tgtcgccggc
     3961 cttcgcgccg agcgcgccac cggccaccgc gccgatcacc gtgccgggcg gccccgcgac
     4021 cgagccgatc gccgcgcccg ccaccgcacc gccgaccgcg ccggtgcctt cgccgatgct
     4081 gtgatccttc ttgatgtcgc tcatcgctgt ctcctgtgtc cgcgcctggg ttgtcggcgt
     4141 cgtcaccgca ccgtagcggg cgcgcggttg gcgcgtggtg aagcggcgcg tgttcagcga
     4201 tgcaggcggc gcgacgactc agaacggttc atccagccgc cagcgcaggc cggacacgcg
     4261 ctcgacccgg cgcggcaacg ccgcgcgcag cacgtcctcg tccgcgcaca ggtgcagcgc
     4321 gcggcgcgcg cgggtcaacg cggtgtagac cagttcgcgg gtgagcgggc gcgcgtccac
     4381 ccgcggcagc accagccagg cgctgtcgta ctcggagccc tgcgccttgt gcacggtcat
     4441 cgcgaaagcg ccgccgtgcg cgggcagcgt ggccggatgg aagccacgcg ggcctgcgct
     4501 gccggcgaac cacgcgacca tcgcgccggt gtcgtcgcgc aggcacacgc cgatgtcgcc
     4561 gttggaaagg ccctggcgcg cgctgttcgc ggtgacgagc agcaggcgcc cgtggaagta
     4621 gggctcgcgc tgcacgccgg cgagcgcgtc ctcgatgcgc gcattgagcg gaccggcgcc
     4681 ctggggaccc tcgcgcagcg cggtgagcac gcgcgcgcgg tcggcgaggg cgagcgcggc
     4741 ggcgggatcg gcggcctgca gcagctcccg ccacggcgcg agcagcgtct cccgcagcgc
     4801 gggcacgagc ggatcggcgg cgtccgcatg gaaggcgatg ccgccgagcg tgccggcccg
     4861 cagcaacgcc agcgcgcgct ccggatcgcc gctgcgcacc gcctcggcca gcggggcgag
     4921 ctgcagcgcc tcttcctggc ggtacgcgcg ccgcaggtgc acgcggtggc cggcgagcgc
     4981 cgcgcgcggc cgctgcgcgg cgaagaggtc gtcggtggcg ggcggtgcgg gcacgccgag
     5041 cagcgccgcg tcgagggccg acagcatcgg ttcctcgccg gccgcgtcga cgatcgccgc
     5101 cagcacgtcg ccggcctcca ccgagggcaa ttgatccgga tcgccgagca ggaccaggcg
     5161 cgcgccgtcg gccaccgctt cggccagctt gcacatcaac ggcaggtcga ccatcgaggc
     5221 ctcgtcgacc acgacggtgt cgtacgccag cggatgcgcg gcgtcgtggc ggaagcgcgg
     5281 actgtccggg atgacgccga gcagacggtg cagggtttgc gcgcggtctg gcagtgcgtc
     5341 gcaccaggcg ggatcgatgc ccacggtccg gcgcaggcct tcggtcgccg cccgcaggct
     5401 cgcggccatg cgctcggcgg cgcgaccggt gggcgcggcg agcgcgatgc gcggcacgtc
     5461 ctcgcccgcc agccgcgcct gcgcgaccag cagcagcaac acgcgcgcga tggtggtggt
     5521 cttgccggtc ccggggccgc cggtgaccag cagcagcgcg cgttgcaacg cgcgcgtcgc
     5581 ggccagggcc tgggcatcgt cggcgcgggc gtgcgggaac agcgcgcgca gcaccggctg
     5641 caacgcggcg gcgtcgggcg cgggcaacgg gcgcgccgcg cagcggcgca acgcggcggc
     5701 gaggcggcgt tcgtattcgc ggtagcggcg caggtagagc aggccgcgtt cgagcaccag
     5761 cggcgtcgcg ggcgccgctt cgtccggtgg cgggcaggcg atccacgcgc tcgcgcgcca
     5821 ggcggcctcc cactcggtgg gcgcgggcca cggcgcgtcg gcgatgcgcg cggcctgcgc
     5881 cggatcgaag gccgcgtggc cctcgccgac cgcgcgcgag gcgagcgcgg cgccggccag
     5941 caccgcgtcg gcggtgtcgc gaccggcgtc gaggcggcgc agcgcctgcg ccagcgcgtg
     6001 gtcgagcggt cgcagcaggc catcgcgcac gagtcgctcg aacaggctca tgcgcgctgc
     6061 tccgcctggc ccgcgaacag cgcgtcgagc ccgtgcagca gcgccggcgc cggtgtccac
     6121 gcatgcacgc ccgcgccgtc gccgagcgcg agcccgcggc agaacaggta gcgcacgcca
     6181 ccgaagtcgc gcgcgtagtc gtattccgcg ccgagccgga aatgcagcca gcggtgcagg
     6241 gcgagcgtgt agagcagcgc ctgcaggtcg tagccgctgt gcgccat
//
LOCUS       DATIQC010000174         2965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_11868, whole genome shotgun sequence.
ACCESSION   DATIQC010000174 DATIQC010000000
VERSION     DATIQC010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11868"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1789)
                     /gene="putA"
                     /locus_tag="VLM17_03650"
     CDS             complement(<1..1789)
                     /gene="putA"
                     /locus_tag="VLM17_03650"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0004657 - proline dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0010133 - proline catabolic process to
                     glutamate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HSR64686.1"
                     /translation="MTPDSPAAPAPAARPMLAPELPPPPAATRAAITAAWVRDEAEAV
                     RALLAQARQPHPDWSEADRAAIQATAADLVRRVRARARDQGAIEAFMRQYDLGSEEGV
                     LLMCVAEALLRIPDPDTADKLIRDKLGEADWKRHMGQSDSILVNASTWGLMLTGHLVD
                     LADATRRDVHGAFKRLIGRIGEPVIRLAVRQAMRIMGHQFVMGRTIDEALARSHKGAN
                     AAYRYSFDMLGEGALTAADAQRYLAAYRMAIDAIGGSGSFVGGDVFAAPSISVKLSAL
                     HPRYEHAKRARVLAELGPSLLELSQRARRHGIGLTIDAEETDRLELSLDLIFQVLADP
                     SLQGWDGFGIVVQAYQKRAPFVIDHIAQMARTLGRRIPVRLVKGAYWDSEVKRAQMDG
                     QAGYPVFTRKPNTDVSYQANARRLLEAVDAIYPMFATHNAQTIAAIHRMAQTVIGGAR
                     DAGGRFRYEFQKLHGMGDDLYAEVIPQDRLDVPCRVYAPVGSHEDLLPYLVRRLLENG
                     ANSSFVNRITDEAIAVDDLIQDPVETVSAFESIAHPRIPQPVDLYRSFGIERNNSMGV
                     NLANDDQLRTLAEQVNAATKSDWRAAPLVP"
     gene            2090..>2965
                     /gene="coxB"
                     /locus_tag="VLM17_03655"
     CDS             2090..>2965
                     /gene="coxB"
                     /locus_tag="VLM17_03655"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HSR64687.1"
                     /translation="MMTGRFKQWGMGVAAMAAPLLAFAQDAAQKGAAVTGADVEPYEP
                     ARWQLNMTPGVTPTSHMAYDAHMFALWVCVVIGLIVFGAMAVAIFRFRKSKGAVAATW
                     SHNTTAEIIWTIVPVVLLVVMAWPATAKLIAEYDTRDSEMTIKVTGYQWMWKYDYLGE
                     GVSFTSRLDRASDAMRQSHQVPTMQALPHYLRDVDNMLVVPVDTKIRFVVTADDVIHA
                     WWVPALGWKQDAIPGIINEAWAKVTRPGIYRGQCAELCGKDHGFMPIVVKAVSKADYA
                     QWLAAQKAAGAPAPTA"
BASE COUNT          427 a          985 c         1107 g          446 t
ORIGIN      
        1 ccggcaccag cggcgctgcg cgccagtcgg acttcgttgc ggcattgacc tgctcggcga
       61 gcgtgcgcag ctggtcgtcg ttggcgaggt tcacgcccat ggaattgttc ctttcaatgc
      121 cgaagctgcg gtacaggtcg accggctgcg ggatgcgcgg atgcgcgatg gattcgaatg
      181 cggaaacggt ttcgaccgga tcctggatga ggtcgtcgac ggcgatggcc tcgtcggtga
      241 tgcggttgac gaagctcgag ttcgcgccgt tctcgagcag gcggcgcacc aggtacggca
      301 gcaggtcctc gtgcgagccg accggcgcgt acacgcggca gggcacgtcc agccggtcct
      361 gcgggatgac ctcggcgtag aggtcgtcgc ccatgccgtg cagcttctgg aactcgtagc
      421 ggaagcggcc gccggcgtcg cgcgcgccgc cgatcaccgt ctgcgccatg cgatggatgg
      481 ccgcgatggt ctgtgcgttg tgggtggcga acatcggata gatcgcgtcc accgcttcca
      541 gcagccggcg cgcattggcc tggtaggaca cgtcggtatt gggcttgcgg gtgaacaccg
      601 gatagccggc ctggccatcc atctgcgcgc gcttgacctc gctgtcccag taggcgccct
      661 tgaccaggcg caccgggatg cggcggccca gcgtgcgcgc catctgcgcg atgtggtcga
      721 tgacgaacgg cgcgcgcttc tggtaggcct gcacgacgat gccgaagccg tcccagccct
      781 gcagcgaggg atcggccagc acctggaaga tgaggtcgag cgacagttcg aggcggtcgg
      841 tttcctcggc atcgatggtc aggccgatgc cgtgccgcct ggcgcgctgc gagagctcga
      901 gcaggctcgg cccgagttcg gccagcacgc gcgcacgctt ggcgtgctcg tagcgcggat
      961 gcagcgccga cagcttcacc gagatgctgg gcgcggcgaa gacatcgccg ccgacgaagg
     1021 acccactgcc gccgatcgcg tcgatcgcca tgcggtaggc ggcgaggtag cgctgcgcgt
     1081 cggccgcggt cagcgcgccc tcgccgagca tgtcgaacga atagcggtag gcggcgttcg
     1141 cgcccttgtg cgagcgcgcc agcgcctcgt cgatcgtgcg gcccatcacg aactggtggc
     1201 ccatgatgcg catcgcctgg cgcaccgcga ggcggatcac cggctcgccg atgcggccga
     1261 tgaggcgctt gaacgcgccg tgcacgtcgc gcctggtggc gtcggcgagg tcgaccaggt
     1321 ggccggtcag catcaggccc caggtcgagg cgttgaccag gatcgaatcc gactggccca
     1381 tgtgacgctt ccagtcggcc tcgccgagct tgtcgcggat cagcttgtcg gcggtgtcgg
     1441 gatcggggat gcgcagcagg gcctcggcca cgcacatcag cagcacgcct tcctcgctgc
     1501 cgaggtcgta ctggcgcatg aacgcctcga tcgcgccctg gtcccgcgcg cgggcgcgga
     1561 cccgccgcac gaggtcggcg gcggtcgcct ggatggcggc gcggtcggcc tcgctccaat
     1621 cgggatgggg ctggcgggcc tgggcgagca gcgcgcgcac cgcctcggcc tcgtcgcgca
     1681 cccatgcggc ggtgatggcg gcgcgcgtcg cggcgggcgg cggcggcagt tcgggggcga
     1741 gcatgggccg ggcggccggg gccggcgcgg cgggggaatc gggagtcatt cgagggcagg
     1801 ccggacgagc cgcggaagcc cgccatttta gcggcgatgc gacgcgttcc gcaccccgcg
     1861 cggcttgccg ccggcgcggc gcgggggcta ccatgcgcag gtttctccgc ggccgcgatg
     1921 cgatgcgccg cgccatgacc agggtcaagc aacggacgct tccccgcaac gcgggcggcg
     1981 cgcccgggcg tcggcggttc gccgcgacgc gctgcgagga ccgggcgtgg cgcaggcgcg
     2041 gcagctggcc ggcgcggacg acgatccaat tttgcgaatc tggggttcga tgatgaccgg
     2101 tcgtttcaag cagtggggca tgggcgtggc cgcgatggcg gcgccgctgc tggcgttcgc
     2161 gcaggacgct gcgcagaagg gcgcggctgt aaccggggct gacgtcgagc cctacgagcc
     2221 ggcgcgctgg cagctcaaca tgacgccggg cgtgaccccg acctcgcaca tggcctacga
     2281 cgcgcacatg ttcgcgctgt gggtgtgcgt ggtgatcggc ctgatcgtgt tcggcgcgat
     2341 ggcggtggcg atcttccgct tccgcaagtc caagggcgcg gtcgccgcga cctggtcgca
     2401 caacaccacc gccgagatca tctggacgat cgtgccggtg gtgctgctgg tggtgatggc
     2461 ctggccggcc accgccaagc tgatcgccga atacgacacc cgcgattccg agatgaccat
     2521 caaggtcacc ggctaccagt ggatgtggaa gtacgactac ctgggcgagg gcgtgtcctt
     2581 caccagccgc ctggaccgcg ccagcgacgc gatgcgccag agccaccagg tgccgaccat
     2641 gcaggcgctg ccgcactacc tgcgcgacgt cgacaacatg ctggtggtgc cggtcgacac
     2701 caagatccgg ttcgtcgtca ccgccgacga cgtcatccac gcctggtggg tgccggcgct
     2761 gggctggaag caggacgcga tccccgggat catcaacgag gcctgggcca aggtgacccg
     2821 gccgggcatc taccgcggcc agtgcgccga gctgtgcggc aaggaccacg gcttcatgcc
     2881 gatcgtggtc aaggccgtga gcaaggccga ctacgcgcag tggctcgccg cgcagaaggc
     2941 cgccggcgcc ccggcgccga cggcc
//
LOCUS       DATIQC010000175         1702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_259156, whole genome shotgun sequence.
ACCESSION   DATIQC010000175 DATIQC010000000
VERSION     DATIQC010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_259156"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1258)
                     /gene="dbpA"
                     /locus_tag="VLM17_03660"
     CDS             complement(<1..1258)
                     /gene="dbpA"
                     /locus_tag="VLM17_03660"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014090365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003724 - RNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HSR64688.1"
                     /translation="MTTPSFSALPLAPGLRPGLDALGYTTMTPVQAQALPAILAGRDV
                     IAQAPTGSGKTAAFGLGLLQKIDASRVQAQALVLCPTRELADQVGKQLRTLAVGIPNL
                     KLSVLCGGIPLGPQLASLAHHPHVVVGTPGRILELSQKKALELNDVRTLVLDEADRML
                     DMGFEEAIRAIVKQLPKQRQGLLFSATFPEPIRALGNAMLRDALEVNIEGDVHPPTIE
                     QRFFEVDPARKAPLLAALLLEYKPESCVVFCNMRRDTDEVAGSLEHYGFTALALHGDM
                     EQRDREEVLVRFANRSCNVLVASDVAARGLDIDDIGAVVNYELPTDADTYLHRIGRTG
                     RAGRAGLALSLCAPKEVARASMIEERLGKPLRWERAAPLAGKPQHVPSPAMATLRIDA
                     GRSDKLRPGDIVGALTGDVALKKESIG"
     gene            complement(1374..1702)
                     /locus_tag="VLM17_03665"
                     /pseudo
     CDS             complement(1374..1702)
                     /locus_tag="VLM17_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008571736.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
BASE COUNT          248 a          598 c          599 g          257 t
ORIGIN      
        1 tgccgatcga ctccttcttc agcgcgacgt cgcccgtgag cgcgccgacg atatcgccgg
       61 ggcgcagctt gtcgctgcgg ccggcgtcga tgcgcagggt cgccatcgcg ggcgatggca
      121 cgtgctgcgg cttgccggcc agcggcgcgg cgcgttccca gcgcagcggc ttgccgaggc
      181 gctcctcgat catgctcgcg cgggccacct ctttcggcgc gcacaggctc agcgccaggc
      241 cggcgcgccc ggcgcgcccg gtgcggccga tgcggtgcag gtaggtgtcg gcatcggtgg
      301 gcagctcgta gttcaccacc gcgccgatgt cgtcgatgtc cagcccgcgc gcggccacgt
      361 cgctggccac cagcacgttg cagctgcggt tggcgaagcg caccagcact tcctcgcggt
      421 cgcgctgctc catgtcgccg tgcagcgcca gtgccgtaaa gccgtagtgc tcgagcgacc
      481 cggccacctc gtcggtgtcg cggcgcatgt tgcagaacac cacgcacgac tccggcttgt
      541 attccagcag cagtgcggcc agcagcggcg ccttgcgcgc gggatcgacc tcgaagaagc
      601 gttgctcgat cgtcggcggg tggacatcgc cttcgatgtt gacctccagc gcgtcgcgca
      661 gcatcgcgtt gccgagtgcg cggatcggct cggggaacgt cgccgagaac agcaggccct
      721 gccgctgctt cggcaactgc ttgacgatcg cgcggatcgc ctcctcgaag cccatgtcga
      781 gcatccggtc ggcctcgtcc agcaccagcg tgcgcacgtc gttcagttcc agcgcctttt
      841 tctggctcag ctcgaggatg cgtccgggcg tgccgaccac cacgtgcgga tggtgcgcga
      901 gcgatgcgag ttgcggtccc agcggaatgc caccgcacag caccgagagt ttcaggttgg
      961 gaatgccgac cgcgagcgtg cgcagctgct tgccgacctg gtcggccagc tcgcgggtcg
     1021 gacacagcac cagcgcctgc gcctgcacac gcgatgcgtc gatcttctgc agcagcccca
     1081 gcccgaacgc cgcggtcttg ccgctgccgg tgggggcctg cgcgatgacg tcccggccgg
     1141 cgaggatcgc cggcagcgcc tgcgcctgga ccggggtcat ggtggtgtag ccgagcgcgt
     1201 cgaggccggg gcgcaggccg ggggcgagcg gaagcgctga aaaagaaggc gtggtcatgc
     1261 cgccatgatc gcagcatcgc cgggcgaacg cgccacacgc agggcctcaa aaccgcacct
     1321 cagggtcttt cgagcgcggc gatcaccttg tccagcacgc ccgcgagcgg accattggcg
     1381 tccatggcga tgacgtcggg ctccgcggcg ggcgactgaa gggcatcgaa ctggctggcc
     1441 aacagctgca aaggcatgaa atggctggtg cgaccggcca gcctcccggc aatcacggtc
     1501 ggtgccgcat gcaggaagac gaagcgcacc ggcacgccgc cgtgcgcagg cgctggcggt
     1561 gcagcgcccg caggcccgag aacgccagta ccgacgaacg gccttgctgc gcatgccgac
     1621 gcagctcgcg ctgcagcctg cctacccagg gctcgcgctg ctcgtcagtg aggggggttc
     1681 ccgccgccat ctgcgccttg gc
//
LOCUS       DATIQC010000176         9973 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_647887, whole genome shotgun sequence.
ACCESSION   DATIQC010000176 DATIQC010000000
VERSION     DATIQC010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9973
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_647887"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VLM17_03670"
     CDS             complement(<1..319)
                     /locus_tag="VLM17_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008576904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR64689.1"
                     /translation="MTFESLGLSPALLRALADAGYATPTPIQAEAIPLVLDGHDVLGG
                     AQTGTGKTAAFALPLLQRLAGSTKPATGPRKPRALVLVPTRELAVQVRDSLKAYGRHL
                     RLNV"
     gene            865..2961
                     /locus_tag="VLM17_03675"
     CDS             865..2961
                     /locus_tag="VLM17_03675"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HSR64690.1"
                     /translation="MLLSLAVTAALTGCPQQAPQAAAPADAADAAKPAAPAAELPPTA
                     QFSVADLDTSKNVCDNLADFVNTKWLAAHPVPADRTTWGSFEMLTERSLAATKQIAEA
                     AAGNKGATGVEKLVGDLYATGMDEAAVNAAGAKPLQPILSEIDAIKAPADVAAYLRKE
                     FSEGRGDLFAFYSNADFRNSQLMIAYADQGGLALPEKAYYLQDGPKAGDDSYKKIREA
                     YVAHVSKQLQNAGIAQADADRQAQDVLAFETRLAKASFSPIELRDPKNQYHLVKVSDA
                     DKAAPNFPWSEFLKAQGVSTDSFSLSQPKFFAEVNKMVADAPVAQWQAYFRAHAIDGL
                     SPFLADSFAQEQFAFYGNTLRGQKEMKPRWKRVMGATEDSVGEALGQLYVRQYFPAES
                     KAAMEKLVGNLRIALKARLEKLDWMSDTTKAKAIEKWDSFMPKVGYPDKWRSWDGLAT
                     SRGGYLQNVLAATKFNYDWLMGKVGKPVDRTEWGMSPQTVNAYYNPQQNEIVFPAAIL
                     QPPFFDPKADPALNYGGIGAVIGHEMLHGYDDQGSQFDAKGNFANWWQASDSKGFKSR
                     TAKLVKQFDDYESIDGLHVKGELTLGENIADLGGTTVAFDALQKALADAGKSPDEKID
                     GYTENQRFWLNWATVWRRNFNPEELKVRLNTDPHAPANFRAIGAPSNEPSFAQAFSCK
                     PGDRMVRADDQRVVIW"
     gene            3074..5182
                     /locus_tag="VLM17_03680"
     CDS             3074..5182
                     /locus_tag="VLM17_03680"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005912990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HSR64691.1"
                     /translation="MSKLLPAPTALAVALLSTLALGACQKSGDGAISDAHAAPATAPA
                     LHLDEAKLPPVNHFAPSDLDPAKSACADLGAYVNGKWQAANEIPGDRSSWGAFDMLAE
                     RSLAVRHQLAEQAAGDAHAAGIEKIVGDFYATGMDEAKVDAQGIAPLQSRLDAIAALK
                     DGAAVADWLRASFAQGEGFLFGFGPEADFKNSSMNMAYATQGGLGLPDKGYYFDKDKA
                     DKLAAYQAHVAKVLELSGVSAAAAAQQAKDVVAFETRLARASKSSEELSRDVSLYYNP
                     VTPAAADKLTPNFPWTKFFAAQGIAAPATFSLAMPAFHEEVSRMLADVPVGTWQAYLR
                     FHTVDEASPYLGTAFADENYAFYGKAMRGQKEQKARWKRVLGAIEGGAGEAFGQMYVQ
                     VAFPAESKMRMEQLVQNLRTALKARIQQLDWMSPETKAKAIAKWDSFTPKIGYPSKWR
                     DWTGLKTSRDSYIGNVLAANQFNYRWQLGKIGKPVDRTEWTMSPQTVNAYYNPLQNEI
                     VFPAAILQPPFFDPKADDAVNYGGIGAVIGHEMTHGYDDQGSRFGPTGNMENWWTDAD
                     AKNFASRTDKLVNQFNGYEALPGIKVNGKLTLGENIADLGGLATAYDAMHAATAGKPD
                     PMIDGLTRDQRFFLNWATVWRDKMTPDYKKVLVATNPHAPAEFRAIGAPSNLPAFAAA
                     FQCKAGDAMVRADDKRVVIW"
     gene            5325..7346
                     /locus_tag="VLM17_03685"
     CDS             5325..7346
                     /locus_tag="VLM17_03685"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014403877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HSR64692.1"
                     /translation="MLSTLALGAAAADNAGGTPVFDPGELDAAGNACASLNDYVNAKW
                     LAANPIPADRTRWGSFDALRERSLQAQHAIVDKANANADHGQAGSIEQKIGWLYRSGM
                     DEAAIERAGFQPLQPELKAIARIRTRGELAGWLRAAFARGDGQGFRFGANADYQDAQR
                     QIAYASQGGLGLPTPDYYTLPEHADLRAAYRDYIAKSFALTGVPATTARDKADGVVAF
                     ETRLARASLSRVALRDPKNRYHFVSLAEADKLTPHFDWAAFFKALDVPAGDGFSLSQP
                     RFFAEFDAMLADAPLAQWRDYLAFHAIDDAAPYLSQAFQDANFAFYGQTLNGQPAQRP
                     RWKRVLDAVNDGMGEGLGQLYVADYFPPEAKARAQQLVDNVRQALKARIEKLDWMGDA
                     TRAKALEKWATFLPKIGYPEHWRSYDGLAVRPGDYYGNVKAAAAFNNRWDLDHIGKPT
                     DRLEWGMTPQTVNAYYSSSTNTINFPAAILQPPFFYANGDDAINYGGIGAVIGHEASH
                     GFDDNGSQFDAVGNNANWWTDADRRQFEDRTARLVRQFEGYAPLKDHPDQHVNGKLTL
                     GENIADLGGLNVAYDALQAALAADPREARSKIDGFTQDQRFFLSWARVWRGNIRDKAQ
                     LVLLNTDPHSPSQFRAVGAPSNMPAFAQAFQCKAGDAMVRDGNQRVSIW"
     gene            7507..9522
                     /locus_tag="VLM17_03690"
     CDS             7507..9522
                     /locus_tag="VLM17_03690"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007969573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HSR64693.1"
                     /translation="MTPTRPLVLALAIALCALAASPADAAKKKHATRKKSTAPVASAA
                     CKDYYADANADWLKTATPIAGSGMQSAFGQLAQRARQQQVDLLNADMQAQGGIGKLLG
                     DFWASGLDEASIERQGATPIAPLLSRIDAIRRSKDVPAAIAALHQVGIPVAFNFGADL
                     DLQDLDRTIGYFGQGGLGLPDPAYYTRGDADTRALLGRYTDYVSKVLALAGSKPADVP
                     ADTQAVLGIEQRIAALSKPLATLGDPRANFAPVAVADLGKQYPHLHLDDFLKAQGVRD
                     DRVSLANPALFAQLDAMVAGLKPAEWKAYLRYQVGAAMAPYLARPWREVDFAFKGSVL
                     RGEQAPPPRQVLVLDAINLAAGPMLGHEYVARYLPGPTRARAQEIAMQVRDALGRGID
                     RAAWMGAPAKAEAKAKLAALQVQVGPPARDPDFSVQPMGRGSFGANMLIASTWRHREE
                     MRRIGRGNAEARWDARQQNPALHYDLAHNRLVVTAAMLQAPVLDMAQPAAAQYGAFGA
                     LVGHELTHGFDASGRLVDAKNTVRDWWTPADASAWDARLAPLVSQYANYPWPDAGALV
                     DGRRTRDENAADLAGVELAWDAFNAAQPAASNDDKRGFFAAWAHLWPQQWSQDVAARL
                     AATELHAPGQWRANGPLANLPAFGSTFACKAGAPMQRSSAQQVSVWR"
     gene            9658..>9973
                     /locus_tag="VLM17_03695"
     CDS             9658..>9973
                     /locus_tag="VLM17_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003478314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64694.1"
                     /translation="MPVDLPVPPLPRPGQQRAWWRAPASPSALALHVGVAAAAHDGPL
                     LVVTRDNHGAQQMESDLRTLLARDTASRHDATAARECWPPVVPFPDWETLPYDQFSPH
                     PDI"
BASE COUNT         1634 a         3702 c         3382 g         1255 t
ORIGIN      
        1 tcacgttgag ccgcaggtgg cggccatagg ccttgaggct gtctctgacc tgcaccgcga
       61 gctcgcgggt cggcaccagc accagcgcgc gcggcttgcg cgggccggtc gccggcttgg
      121 tcgacccggc caggcgctgc agcaggggca gcgcgaaggc ggcggtcttg ccggtgccgg
      181 tctgggcacc gccgaggacg tcgtggccgt cgaggaccag cgggatggcc tcggcctgga
      241 tcggcgtcgg ggtggcgtag ccggcgtcgg cgagcgcgcg cagcagggcg ggcgaaagcc
      301 cgagggattc gaacgtcatg gaaactccga tggcaaggcg tcccggcgtg gccgggcgcc
      361 gactcgaagc tttcctggga aaccgcgctg cgagtggatt ttgacggcgc cgggaaaccg
      421 gcaccgtgtc ggcgcgacga aaggcgtgcg ggataaaagg ccgcgaggcg ggcgctagcc
      481 cgaggcggcg gggcttacct ggaaaacgga tcagccgtgc gcgaacgggg cggactgtac
      541 gcgaagcggc cgatgggcgc cagcaccctt ccggccgggc gttcacccgg cgacgggcgg
      601 ggcgcccccg ccgaacccgc ccccgcaggc gcgcccggcc gtgacggcgc gcacggcttg
      661 cccgccgatc gtggcaagcg tgaaaaaccc gttaccccca cgccatgacc ttcgacaccc
      721 gctcgcccgc cggaacggcc gctacagtcg ggcgatgcct tcgggctagc ctgtccttgc
      781 catgcgccgg ccgacggccg gttcgactcc ccttgccgcc cgtccgggcc ggagaccaac
      841 gtgatccttc gcaagcccca attgctgctg ctctccctgg ccgtcaccgc cgcgctgacc
      901 ggctgcccgc agcaggcccc gcaggccgcc gctcccgccg acgcagccga cgccgccaag
      961 cccgccgcgc ccgcggccga gctgccgccg accgcgcagt tctcggtcgc cgacctcgac
     1021 accagcaaga acgtctgcga caacctcgcc gacttcgtga acaccaagtg gctcgccgcg
     1081 cacccggtcc cggccgaccg caccacctgg ggcagcttcg agatgctgac ggagcgctcg
     1141 ctcgccgcca ccaagcagat cgccgaagcc gccgccggca acaagggtgc cacgggcgtc
     1201 gagaagctgg tcggcgacct gtacgccacc ggcatggacg aggccgcggt gaatgccgcc
     1261 ggcgcgaagc cgctgcagcc gatcctgtcg gagatcgacg cgatcaaggc gccggccgac
     1321 gtggccgcgt acctgcgcaa ggagttctcc gaaggccgcg gcgacctgtt cgcgttctac
     1381 tcgaatgccg acttcaggaa ttcgcagctg atgatcgcct acgccgacca gggcggcctc
     1441 gccctgccgg agaaggccta ctacctgcag gacggcccga aggccgggga cgacagctac
     1501 aagaagatcc gcgaggccta cgtcgcccac gtcagcaagc agctgcagaa cgccggcatc
     1561 gcccaggccg acgccgacag gcaggcgcag gacgtgctcg cgttcgagac gcgcctggcc
     1621 aaggcgtcgt tctcgccgat cgaactgcgc gatccgaaga accagtacca cctggtcaag
     1681 gtctccgacg ccgacaaggc cgcgccgaac ttcccctgga gcgagttcct caaggcgcag
     1741 ggcgtgtcga ccgacagctt ctcgctgtcg cagccgaagt tcttcgccga agtgaacaag
     1801 atggtggccg atgcgccggt ggcgcagtgg caggcgtact tccgcgccca cgccatcgac
     1861 gggctgtcgc cgttcctcgc cgacagcttc gcgcaggagc agttcgcctt ctacggcaac
     1921 acgctgcgcg gccagaagga aatgaagccg cgctggaagc gcgtgatggg cgcgaccgag
     1981 gacagcgtcg gcgaggcgct cggccagctg tacgtcaggc agtacttccc cgccgagtcg
     2041 aaggccgcga tggagaagct ggtcggcaac ctgcgcatcg ccctcaaggc gcgcctggag
     2101 aagctcgact ggatgagcga cacgacgaag gcgaaggcca tcgagaagtg ggacagcttc
     2161 atgccgaagg tcggctaccc cgacaagtgg cgcagctggg acgggctggc gacctcgcgc
     2221 gggggctacc tgcagaacgt gctcgccgcc accaagttca actacgactg gctgatgggc
     2281 aaggtcggca agcccgtcga ccgcaccgaa tggggcatgt cgccgcagac ggtgaacgcg
     2341 tactacaacc cgcagcagaa cgagatcgtg ttcccggccg cgatcctgca gcccccgttc
     2401 ttcgacccga aggccgaccc ggcgctcaac tacggcggca tcggcgcggt catcggccac
     2461 gagatgctgc acggctacga cgaccagggc agccagttcg acgccaaggg caacttcgcc
     2521 aactggtggc aggccagcga ctcgaagggc ttcaagtcgc gcaccgccaa gctggtgaag
     2581 cagttcgacg actacgagtc gatcgacggc ctgcacgtca agggcgaact caccctcggc
     2641 gagaacatcg ccgacctcgg cggcaccacc gtcgcgttcg acgcgttgca gaaggcgctc
     2701 gccgacgccg gcaagtcgcc cgacgagaag atcgacggct acaccgagaa ccagcgcttc
     2761 tggctcaact gggccacggt gtggcgccgc aacttcaacc cggaggagct caaggtgcgc
     2821 ctgaacaccg acccgcacgc gccggccaac ttccgcgcga tcggcgcccc gtcgaacgag
     2881 ccgtcgttcg cgcaggcgtt ctcgtgcaag ccgggcgaca ggatggtgcg cgccgacgac
     2941 cagcgcgtgg tcatctggta aagcagcgtt gcatgcagca cccgcgcgcg gcgcctgccg
     3001 cgcgcggctc cttcgcgcag gatgcgcacc cttccgccgc gtgacccgac cgcggcctct
     3061 ttccggacag tccatgagca agctactccc cgccccgacg gcgctcgccg tcgccctcct
     3121 ctccaccctc gccctcggcg cctgccagaa gagcggcgac ggcgcgatca gcgacgcgca
     3181 cgccgcgccg gccaccgcgc ccgcactgca cctggacgag gccaagctgc cgccggtcaa
     3241 ccacttcgcg ccgtccgacc tggacccggc caagagcgcc tgcgccgacc tcggcgccta
     3301 cgtcaacggc aagtggcagg ccgccaacga gatcccgggc gaccgctcct cgtggggcgc
     3361 gttcgacatg ctggccgagc gctcgctcgc cgtgcgccac cagctggccg agcaggccgc
     3421 gggcgacgcg cacgccgccg gcatcgagaa gatcgtcggc gacttctacg ccaccggcat
     3481 ggacgaggcg aaggtcgatg cgcagggcat cgccccgctg cagagccgcc tcgacgcgat
     3541 cgccgcgctg aaggacggcg ccgcggtggc cgactggctg cgcgcctcgt tcgcgcaggg
     3601 cgagggcttc ctgttcggct tcggcccgga agccgacttc aagaactcgt cgatgaacat
     3661 ggcctacgcc acgcagggcg gcctcggcct ccccgacaag ggctactact tcgacaagga
     3721 caaggccgac aagctcgccg cctaccaggc gcacgtcgcc aaggtgctcg agctgtcggg
     3781 cgtgtccgcc gccgccgccg cgcagcaggc gaaggacgtg gtcgcgttcg agacgcgcct
     3841 ggccagggcc tcgaagtcga gcgaggaact ctcgcgcgac gtctcgctgt actacaaccc
     3901 ggtgacgccg gccgccgccg acaagctgac gccgaacttc ccgtggacga agttcttcgc
     3961 cgcacagggc atcgccgcgc cggcgacctt ctcgctggcg atgccggcct tccatgagga
     4021 agtgagcagg atgctcgccg acgttccggt ggggacctgg caggcctacc tgcgcttcca
     4081 caccgtcgac gaggcctcgc cctacctcgg caccgcgttc gccgacgaga actacgcgtt
     4141 ctacggcaag gcgatgcgcg ggcagaagga gcagaaggcg cgctggaagc gcgtgctcgg
     4201 cgcgatcgag ggcggcgccg gcgaggcctt cggccagatg tacgtgcagg tcgcgttccc
     4261 ggccgagtcg aagatgcgca tggaacagct ggtgcagaac ctgcgcaccg cgctcaaggc
     4321 gcgcatccag cagctcgact ggatgagccc ggagaccaag gccaaggcga tcgccaagtg
     4381 ggacagcttc acgcccaaga tcggctaccc gagcaagtgg cgcgactgga cgggcctgaa
     4441 gacctcgcgc gacagctaca tcggcaacgt gctcgcggcc aaccagttca actaccggtg
     4501 gcagctcggc aagatcggca agccggtgga ccgcaccgaa tggacgatga gtccgcagac
     4561 ggtgaacgcc tactacaacc cgctgcagaa cgagatcgtg ttccccgccg cgatcctgca
     4621 gccgccgttc ttcgacccga aggccgacga cgcggtcaac tacggcggca tcggcgccgt
     4681 gatcggccac gagatgaccc acggctacga cgaccagggc agccgcttcg ggccgaccgg
     4741 caacatggag aactggtgga cggacgccga tgcgaagaac ttcgcatcgc gcaccgacaa
     4801 gctcgtgaac cagttcaacg gctacgaggc gctgccgggc atcaaggtca acggcaagct
     4861 gacgctgggc gagaacatcg ccgacctggg cggcctcgcc accgcctacg acgcgatgca
     4921 cgcggcgacc gccggcaagc ccgacccgat gatcgacggc ctgacccgcg accagcgctt
     4981 cttcctcaac tgggcgacgg tgtggcgcga caagatgacg ccggactaca agaaggtgct
     5041 ggtcgccacc aacccgcacg cgccggcgga gttccgcgcg atcggcgccc cgtccaacct
     5101 gcccgcgttc gccgcggcgt tccagtgcaa ggcgggcgac gcgatggtgc gcgcggacga
     5161 caagcgcgtg gtgatctggt gatgtcccgg cgcgcggcgg gcccgcgcgc cattcgccag
     5221 ggggcggcgc catgcgcgcc gcccgtcttt ttttccacag gggaaaaccg atgaacttcc
     5281 gcttcccgcg cgtgctgctc gccgcggccg tgctgccagg gatgatgctc tccacgctcg
     5341 cgctcggcgc ggccgccgcc gacaatgccg gcggcacgcc ggtgttcgat cccggcgagc
     5401 tcgatgccgc gggcaacgcg tgcgccagcc tcaacgacta cgtcaacgcg aagtggctgg
     5461 ccgccaatcc gatcccggcc gaccgcacgc gctggggctc gttcgacgcg ctgcgcgaac
     5521 ggagcctgca ggcgcagcac gcgatcgtcg acaaggcgaa cgcgaacgcc gaccacggcc
     5581 aggccggttc gatcgaacag aagatcggct ggctgtaccg ttccggcatg gacgaggcgg
     5641 cgatcgagcg cgccggcttc cagccgctcc agcccgaact gaaggcgatc gcccgcatcc
     5701 gcacccgcgg cgaactggcc ggctggctgc gcgcggcctt cgcgcgcggc gacggccagg
     5761 gcttccgctt tggcgccaac gccgactacc aggatgcgca acggcagatc gcctatgcca
     5821 gccagggcgg cctcggcctg cccacgcccg actactacac cctgcccgag cacgccgacc
     5881 tccgcgccgc ctaccgcgac tacatcgcga agagcttcgc gctgaccggc gtgccggcga
     5941 cgacggccag ggacaaggcc gacggcgtgg tcgccttcga gacgcgcctg gccagggcct
     6001 cgctgtcgcg ggtggcgctg cgcgacccga agaaccgcta ccacttcgtc agccttgccg
     6061 aggccgacaa gctcaccccg cacttcgact gggccgcgtt cttcaaggcg ctggacgtgc
     6121 cggccggcga cggcttctcg ctgtcgcagc cgcgcttctt cgccgagttc gacgcgatgc
     6181 tggccgacgc gccgctcgcg cagtggcgcg actacctcgc cttccacgcc atcgacgacg
     6241 ccgcgcccta cctgtcgcag gccttccagg acgccaactt cgccttctac gggcagacgc
     6301 tcaacggcca gccggcgcaa cgcccgcgct ggaagcgcgt gctcgacgcg gtcaacgacg
     6361 gcatgggcga gggcctcggc cagctgtacg tcgccgacta cttcccgccg gaagcgaagg
     6421 cgcgcgcgca gcagctggtc gacaacgtgc gccaggcgct gaaggcgcgc atcgagaagc
     6481 tggactggat gggcgatgcc acgcgggcga aggcgctgga aaagtgggcg accttcctgc
     6541 ccaagatcgg ctatcccgag cactggcgca gctacgacgg cctcgcggtc aggcccggcg
     6601 actactacgg caacgtcaag gccgcggccg ccttcaacaa ccgctgggac ctggaccaca
     6661 tcggcaagcc gaccgaccgc ctcgagtggg gcatgacgcc gcagacggtg aacgcgtact
     6721 acagctccag caccaacacg atcaacttcc cggcggcgat cctgcagccg ccgttcttct
     6781 acgcgaacgg cgacgacgcg atcaactacg gtggcatcgg cgcggtgatc ggccacgagg
     6841 ccagccacgg cttcgacgac aacggcagcc agttcgacgc ggtcggcaac aacgccaact
     6901 ggtggaccga cgcggaccgc aggcagttcg aggatcgcac cgcccggctg gtgcggcagt
     6961 tcgaaggcta cgcgccgctc aaggaccatc cggaccagca cgtcaacggc aagctgacgc
     7021 tcggcgagaa catcgccgac ctcggcggcc tcaacgtcgc ctacgacgcg ctgcaggccg
     7081 cgctcgccgc cgacccgcgg gaagcgcggt cgaagatcga cggcttcacc caggaccagc
     7141 gcttcttcct gagctgggcg cgggtgtggc gcggcaacat ccgcgacaag gcgcagctgg
     7201 tgctgctcaa caccgacccg cattcgccct cgcagttccg tgcggtcggc gcgccgtcca
     7261 acatgccggc gttcgcgcag gccttccagt gcaaggccgg agacgcgatg gtgcgcgacg
     7321 gcaaccagcg cgtttcgatc tggtaggacc gcgccggcgc gccggcattg ccgactccga
     7381 tgcgacgaag gcccgggcaa ccgggccttc gttttgcgcg cggcgtcgca catcgcgcgg
     7441 ccgctgttca gcggcggcct ccggacgctt gctagactcg gccggtcccc acacggaacg
     7501 cgccgcatga ccccaacgcg accgctggtg ctcgccctcg ccatcgccct gtgcgcgctg
     7561 gccgcatcgc ccgccgatgc cgcgaagaag aaacacgcga cccgcaagaa gtcgacggcg
     7621 cccgtcgcca gcgcggcgtg caaggactac tacgcggacg ccaatgccga ctggctgaag
     7681 acggctacgc cgatcgccgg ttccggcatg cagtccgcgt tcggccagct cgcccagcgc
     7741 gcgcgccagc agcaggtcga cctgctcaac gccgacatgc aggcgcaggg cggcatcggc
     7801 aagctgctcg gcgatttctg ggccagcggg ctcgacgagg cctcgatcga acgacagggc
     7861 gcgacgccga tcgccccgct gctctcgcgc atcgacgcga tccgccgcag caaggacgtc
     7921 ccggccgcga tcgccgcgct gcaccaggtc ggcatcccgg tcgcgttcaa cttcggcgcc
     7981 gacctcgacc tgcaggacct cgaccgcacc atcggctact tcggccaggg cggcctcggc
     8041 ctgcccgatc ccgcctacta cacccgcggc gacgccgaca cgcgcgcgct gctcggccgc
     8101 tacaccgact acgtgtcgaa ggtgctcgcc ctcgccggca gcaagcccgc ggacgtgccg
     8161 gccgacaccc aggccgtgct cggcatcgag cagcgcatcg cggcgttgtc gaagccgctc
     8221 gccacgctcg gcgacccgcg cgcgaacttc gcgccggtcg cggtcgccga cctcggcaag
     8281 cagtacccgc acctgcacct ggacgatttc ctcaaggcgc agggcgtgcg cgacgaccgc
     8341 gtctcgctcg ccaatcccgc actgttcgcg cagctcgacg cgatggtggc cgggctcaag
     8401 ccggccgaat ggaaggccta cctgcgctac caggtcggcg cggcgatggc gccgtacctg
     8461 gccaggccct ggcgcgaggt cgacttcgcc ttcaagggga gcgtcctgcg cggcgagcag
     8521 gcgccgccgc cgcggcaggt gctggtgctc gacgcgatca acctcgccgc cgggccgatg
     8581 ctcggccacg agtacgtcgc ccgctacctg cccggcccga cccgggcgcg cgcgcaggag
     8641 atcgccatgc aggtgcgcga cgcgctcggc cgcggcatcg accgcgcggc gtggatgggc
     8701 gcaccggcga aggcggaggc gaaggccaag ctcgccgcgc tgcaggtcca ggtcggcccg
     8761 ccggcgcgcg atccggattt cagcgtgcag ccgatgggcc gcggcagctt cggcgccaac
     8821 atgctgatcg cctcgacctg gcgccaccgc gaggagatgc gccggatcgg ccgcggcaac
     8881 gccgaggcgc gctgggacgc gcggcagcag aatcccgcgc tgcactacga cctcgcgcac
     8941 aaccggctgg tggtcaccgc ggcgatgctg caggcgccgg tgctcgacat ggcgcagccg
     9001 gcggccgcgc agtacggcgc gttcggcgcg ctggtcggcc acgagctcac ccacggcttc
     9061 gacgccagcg gccgcctcgt cgacgcgaag aacaccgtgc gcgactggtg gacgcccgcc
     9121 gatgcgtcgg cgtgggacgc gcgcctggca ccgctggtgt cgcagtacgc gaactacccg
     9181 tggccggacg ccggcgcgct ggtcgacggc cgccgcacgc gcgacgagaa cgccgccgac
     9241 ctggccggcg tcgagcttgc gtgggacgcc ttcaatgccg cgcagcccgc ggcctcgaac
     9301 gacgacaagc gcggcttctt cgccgcgtgg gcgcacctgt ggccgcagca gtggtcgcag
     9361 gacgtcgccg cccgcctcgc cgcgaccgag ctgcacgcgc cgggacaatg gcgcgcgaac
     9421 ggcccgctcg ccaacctgcc cgccttcggc agcacgttcg cgtgcaaggc cggcgcgccg
     9481 atgcagcgca gcagcgcgca gcaggtgtcg gtctggcgct gaccgggtga tgcggcggcg
     9541 gcgcacgccg ccgccgggca agcgccacgc gccctccacc ggcgccgctt aaaatgcacg
     9601 gcctttcgcg ctggcgcgca tgcgcccggc gccgccgtcc tttgccccga gcccgcgatg
     9661 cccgtcgacc tccccgttcc gcccctgccc cgccccggcc agcaacgcgc gtggtggcgc
     9721 gcgcccgcgt cgccgtccgc gctcgcgctg catgtcggcg tggcggcggc cgcgcacgac
     9781 ggcccgctgc tggtggtcac ccgggacaac cacggcgcgc agcagatgga aagcgacctg
     9841 cgcacgctgc tcgcgcgcga caccgcgagc aggcacgacg cgacggccgc gcgcgagtgc
     9901 tggccgccgg tcgtgccctt cccggactgg gaaaccctgc cctacgacca gttcagcccg
     9961 caccccgaca tcg
//
LOCUS       DATIQC010000177         2855 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_294661, whole genome shotgun sequence.
ACCESSION   DATIQC010000177 DATIQC010000000
VERSION     DATIQC010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_294661"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VLM17_03700"
     CDS             complement(<1..257)
                     /locus_tag="VLM17_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64695.1"
                     /translation="MNHESEARIDAAHGDDAVAVAAADALPEAGRVSADALGPSLKAA
                     CADWIKAFRLHALWTNLAIEDLHDRYRRTSVGLAWISLSFAL"
     gene            complement(333..785)
                     /locus_tag="VLM17_03705"
     CDS             complement(333..785)
                     /locus_tag="VLM17_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64696.1"
                     /translation="MKTPFQIALLAGFLSLAACSQPEQPTAASGTQAPPAAAKQQTPE
                     ERLAAIEASGRTGLWASVSDVCRQDIGHGVRTTLSWNVKGHADHVVLFVIDAKHGEQH
                     FGQGGPVGERETGPWLQPGLVFLIRAAGTNEELGRVQIGEKPAEACAR"
     gene            966..2768
                     /locus_tag="VLM17_03710"
     CDS             966..2768
                     /locus_tag="VLM17_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64697.1"
                     /translation="MNQRTLVLAVCVASILNAIWFTATTAIPLPSSDDWFFIETFVRK
                     ALEGHLQLTDFFAQRFAGDHSQPLQRLVLLGHLQLAGLDFRIEALVGVAFGILTCGLL
                     GRTLVDAAATPDARRRAWWGCAAIFAVGLSLNATMIYTWSLVGLAWISLLALVAYWLA
                     VAGMRGSRRILALGLATFVLALVTDELAIAGFAAAVGALAVRDRGRPAAALQLALSGG
                     AGLLAGRWLIHAMDGAAAAATPGSLGQLVGIARDPAAWKVVVVPLADSVVHQQHLVEW
                     FPRAAGALQVAIAALLLVLHGAFWWRALSSRNRPSAPVLVLAVACMLLFYAAVAGILL
                     SRVAEHGIDYLHQPRYVMLYALNLIALLLMGFGSQPAAAGSWRGSARGWRTVVAALAV
                     GLVVAQVPLSRAAWREAPYVRIYSERSATALAALARDPAHVPASGCPPILRICLAPPQ
                     VRASTMALMQSHALNLFSARFRARYGLGGLRLPLLSGEPNGRMRPAATAPERGGCSVQ
                     VVKQGPSRIVPGQAFLRQPNGQSAFWLTVAPGTPPFEIDFEGQPVKANRRGEVVTFLH
                     DERQVRAVQAGRPLRFELRCAGTPVGAFEVAVAR"
BASE COUNT          337 a         1015 c         1044 g          459 t
ORIGIN      
        1 agcgcgaacg aaagcgagat ccaggcgagg ccgaccgacg tgcgccggta ccggtcgtgc
       61 aggtcctcga tcgccaggtt ggtccacagg gcgtgcaggc ggaacgcctt gatccagtcg
      121 gcgcaggcgg ccttcaacga cggcccaagc gcgtccgccg agacgcggcc ggcctccgga
      181 agcgcatccg cggcggccac ggcgacggca tcgtcgccgt gggcggcgtc gatgcgggcc
      241 tcggactcgt ggttcatgga ctgcacacca gggccggatg atcgggggtt tcgacctgct
      301 tcgcggcgtt caccgccgcc ttcgcccacg gctcagcggg cgcaggcctc tgccggcttc
      361 tcgccgatct gcacgcggcc gagttcctcg ttggtgccgg cggcgcggat gaggaagacc
      421 agtcccggct gcagccacgg gccggtctcg cgttccccca ccgggccgcc ctggccgaag
      481 tgctgctcgc catgcttggc gtcgatcacg aacaggacga cgtggtcggc atggcctttc
      541 acgttccagg acagggtcgt gcgcacgcca tggccgatgt cctggcggca gacgtcgctc
      601 accgacgccc acaggccggt gcggccggaa gcctcgatcg cggcgagccg ctcctccggg
      661 gtctgctgct tcgccgcggc gggcggcgcc tgcgtcccgg aagcggcggt cggctgctcc
      721 ggttgcgagc aggccgcgag ggacagaaag ccggcaagga gcgcgatctg aaacggagtc
      781 ttcatgggat ctgcaggcaa gggagcaggg gcgcaatcct agcatccggc cgttccgccg
      841 cgaccatgcg ccggtgcatt acgcgcacgt aaccaggcgg tcgtcgcgct tgcggcccat
      901 ggcagcgagc ctcaccatgc gccgtcgcga gcggccgggc cgtgcggccc ttcaaaggaa
      961 accggatgaa ccagcgcacc ttggtccttg ccgtctgcgt ggccagcatc ctcaacgcga
     1021 tctggttcac cgcgaccacg gcgattccgc tgccgtcgtc ggacgactgg ttcttcatcg
     1081 agaccttcgt gcgcaaggcg ctggaagggc acctgcagct caccgatttc ttcgcgcagc
     1141 gcttcgccgg cgatcattcg cagccgctgc agcgcctcgt cctgctgggc cacctgcagc
     1201 tggccgggct ggacttccgg atcgaagccc tcgtgggcgt cgcgttcgga atcctgacct
     1261 gtggcctgtt gggccgcacc ctggtcgatg ccgcggcgac tccggacgcg cgacgccgcg
     1321 catggtgggg atgcgccgcc atcttcgcgg tgggcctctc gctcaatgcg acgatgatct
     1381 acacgtggtc gctggtgggc ctggcctgga tttcgttgct ggcgctggtc gcctactggc
     1441 tggcggtcgc ggggatgcgc ggttcccgcc gcatcctcgc gcttggcttg gccacgttcg
     1501 tgctcgcgct ggtcacggac gagctcgcga tcgccggctt cgccgcggcc gtcggtgcgc
     1561 tggcggtgcg cgaccgcggt cgccccgccg cggccctgca gctggcgctg tccggcggcg
     1621 ccgggctgct ggccggacgc tggctgatcc atgccatgga cggcgcggcg gcggcagcga
     1681 ccccgggttc gctggggcag ctggtcggca tcgcgcggga tccggcggcc tggaaggtgg
     1741 tcgtcgtgcc gctcgcggat tcggtggtcc accagcagca cctcgtcgaa tggtttccgc
     1801 gcgcggcggg cgcgctgcag gtcgcgatcg ccgcgctgct gctcgtgctg cacggcgcat
     1861 tctggtggcg cgcgctgtcg tcgaggaacc ggccgtcggc tccggtgctg gtcctggcgg
     1921 tcgcgtgcat gctgctgttc tacgcggcgg tcgcgggcat cctcctgtcc cgcgtggccg
     1981 agcacggcat cgactacctg caccagccac ggtacgtgat gctctacgcg ctcaacctca
     2041 tcgcgctgct gctgatgggc ttcggctccc agcccgccgc ggcaggctcc tggcgcggca
     2101 gcgcccgggg ctggcgcacg gtggtcgctg ccctggcggt ggggctggtc gtcgcgcagg
     2161 tgccgctgtc gcgggcggcg tggcgcgagg cgccctacgt gaggatctac agcgagcgga
     2221 gcgcgacggc gcttgcggcg ctcgcccgcg atccggcgca cgtgccggcc tccggctgcc
     2281 cgcccatcct gcggatctgc ctcgcgcccc cgcaggtgcg ggccagcacg atggcgttga
     2341 tgcaatccca cgcgctgaat cttttttccg cgcgattccg cgcgcggtat ggcctcggcg
     2401 ggctgcggct cccgctcctc tccggcgaac cgaacggccg gatgcggccc gccgcgaccg
     2461 ccccggagcg gggcggctgc agcgtgcagg tggtcaagca gggcccatcg cgcatcgttc
     2521 cgggtcaggc gttcctgcgc caacccaacg gccagtcggc cttctggctg acggtggcgc
     2581 ccggcacgcc gccgttcgag atcgatttcg aaggccagcc ggtcaaggcc aaccgtcgcg
     2641 gcgaggtggt gaccttcctc cacgacgagc gccaggtgcg cgccgtccag gcgggccggc
     2701 cgctgcgttt cgagctgcgc tgcgcgggaa cgccggtggg ggcgttcgag gtcgccgtcg
     2761 cgcgctgatc ccgcgtcgcg acggcggtca gtgcgcggcg atcagcgccg cgtcggccgc
     2821 cgcgaagacg gcatcgaggg actcctccag cccga
//
LOCUS       DATIQC010000178         3109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_152977, whole genome shotgun sequence.
ACCESSION   DATIQC010000178 DATIQC010000000
VERSION     DATIQC010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152977"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..730
                     /gene="mtgA"
                     /locus_tag="VLM17_03715"
     CDS             <1..730
                     /gene="mtgA"
                     /locus_tag="VLM17_03715"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005916947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HSR64698.1"
                     /translation="RWLRRLPWLPVVFVVASLLQVLVLRFVDPPFSAFMAERQLAAWA
                     EGDWSFRIAHDWRDLRAMAPSLPLALVAAEDQRFPLHHGFDFEAIRKAQAHNERMEAR
                     AERRNQPVKHLRGASTISQQTAKNLFLWQGSGPTRWLRKALEAWYTVLIEACWPKARI
                     LEMYANIAEFGDGIYGAQAAARSYFGKDAARLTPAESARLAAVLPSPRRYSAGHPGPY
                     VERRSGGIQRQMRHLGRDGVVPPR"
     gene            750..1784
                     /locus_tag="VLM17_03720"
     CDS             750..1784
                     /locus_tag="VLM17_03720"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR64699.1"
                     /translation="MNRERRDLLTVVVAAYNEADALPALHPRVAAAFDALRTDGIEGR
                     VLYVDDGSRDGTWAALRGIAATDPRVALLRLSRNFGKEAALTAGLDLVDDGAALIIDA
                     DGQDPPELIPRFVAKWREGYDDVHGTRTARAGEGWLKKATAHGFYRLIGRLSRTPIPQ
                     DTGDFRLLSPRALAALRQLRERQRFMKGLFGWVGFAHASIPYERDARIAGRSKFNFWT
                     LWNFALEGITSFSTAPLRLATYLGLATALLALLYAAWVVVKALLWGDPVAGWPSMMAV
                     ILLLGGVQLIALGLIGEYLGRLYMESKQRPLYLVDTWLPAPGVSSAATTPAGGEAHAY
                     GPPAARSESA"
     gene            1744..2172
                     /locus_tag="VLM17_03725"
     CDS             1744..2172
                     /locus_tag="VLM17_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014090742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR64700.1"
                     /translation="MRTVRQLLEAKAPEVFAIGPDAPVIDAVRLMADKHIGAVLVMEA
                     GRLVGILSERDYARKVVLQGRSSKDTPVRAIMTTDVVTVRLADTSDRCMQTVTEKRIR
                     HLPVLDGEAVLGVVSIGDLVKAVIEDQQVELDQLQRYIAS"
     gene            complement(2176..>3109)
                     /locus_tag="VLM17_03730"
     CDS             complement(2176..>3109)
                     /locus_tag="VLM17_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HSR64701.1"
                     /translation="KPPSAGAGETATPEQQAEAAREQAKARVLPDHPYELDKLRSMDA
                     DVRWKARHIEAPQLPLDDMDVHLRLDDGLLRLEPLDFGVASGHIRSTVRMDARESPIR
                     THADIAARGLDLARLLPRIQSARDAIGRVGGNVALTGRGNSIAKMLGSAEGSVALGMG
                     RGQVSNLVMELAGLDIEESLKFLLTGDKRIPIRCAFGDFAVQDGVMRANALAFDTTDT
                     IIVGEGVVSLRDETLDLTLRPRPKDRSLLALRSPLIMGGTFKAPHFHPDYKRLGLRGA
                     IALTLGSIAPPAALLATLELGPGKDAQCGGRYAK"
BASE COUNT          429 a         1102 c         1114 g          464 t
ORIGIN      
        1 gcgctggctg cgccggttgc cgtggttgcc ggtggtgttc gtcgtggcca gcctgctgca
       61 ggtgctggtg ctgcgcttcg tcgatccgcc gttctccgcc ttcatggccg aacgccagct
      121 cgccgcctgg gcggagggcg actggagctt ccggatcgcc cacgactggc gcgacctgcg
      181 cgcgatggcg ccgagcctgc cgctggcact ggtggcggcg gaggaccagc gcttcccgct
      241 ccaccacggg ttcgacttcg aggcgatccg caaggcccag gcgcacaacg agcggatgga
      301 ggcgcgcgcc gagcgccgca accagccggt gaagcacctg cgcggcgcca gcacgatcag
      361 ccagcagacg gccaagaacc tgttcctgtg gcagggcagc gggccgaccc gctggctgcg
      421 caaggcgctg gaggcctggt acacggtgct gatcgaggcc tgctggccga aggcccgcat
      481 cctcgagatg tacgccaaca tcgccgagtt cggcgacggc atctatggcg cgcaggcggc
      541 ggcgcgcagc tacttcggca aggatgccgc gcggctgacc ccggccgaga gcgctcggct
      601 ggccgcggtc ctgcccagcc cgcgccgcta cagcgccggg cacccgggcc cctacgtcga
      661 gcgccgcagc ggcggcatcc agcggcagat gcgccacctc ggccgcgacg gcgtcgtccc
      721 gccgcgctga acgcgactac catgcccgca tgaaccgcga acgccgcgac ctgctcaccg
      781 tggtggtggc cgcctacaac gaggcggacg cgctgccggc gctgcatcca cgcgtcgcgg
      841 cggcgttcga tgcgctgcgg accgacggca tcgaggggcg ggtgctgtac gtcgacgacg
      901 gcagccgcga cggcacctgg gccgcgctgc gtggcatcgc cgccaccgat ccgcgggtcg
      961 ccctgttgcg gctgtcgcgc aacttcggca aggaggccgc cctcaccgcg ggactggacc
     1021 tcgtcgacga cggcgccgca ctgatcatcg atgccgatgg ccaggatccg ccggagctca
     1081 tcccgcggtt cgtcgccaag tggcgcgagg gctacgacga cgtgcacggc acccgcaccg
     1141 cgcgcgccgg cgagggctgg ctgaagaagg ccaccgcgca cgggttctac cgcctgatcg
     1201 ggcgcctgtc gcgcacgccg atcccgcagg ataccggcga tttccgcctg ctctcgccgc
     1261 gcgcgctcgc ggcactgcgg cagttgcgcg agcgccagcg cttcatgaag ggcctgttcg
     1321 gctgggtcgg cttcgcccac gcgtcgatcc cctacgagcg cgacgcgcgc atcgccgggc
     1381 gcagcaagtt caacttctgg acgctgtgga acttcgcgct cgagggcatc accagcttct
     1441 cgaccgcgcc gctgcggctg gccacctacc tcggcctggc caccgcgctg ctggcgctgc
     1501 tctacgccgc gtgggtggtg gtcaaggccc tgctgtgggg cgaccccgtc gccggctggc
     1561 cgagcatgat ggcggtgatc ctgctgctcg gcggcgtgca gctgatcgcg ctgggcctga
     1621 tcggcgaata cctcgggcgc ctgtacatgg aatccaagca gcgcccgctc tacctcgtcg
     1681 acacctggct gccggcaccg ggagtatcct cggccgcgac gaccccagcc ggaggagagg
     1741 cccatgcgta cggtccgcca gctgctcgaa gcgaaagcgc ctgaggtctt cgcgatcggc
     1801 cccgacgcgc cggtcatcga cgcggtccgg ctgatggccg acaagcacat cggcgcggtg
     1861 ctggtgatgg aggcggggcg actggtcggc atcctgtccg agcgcgacta cgcgcggaag
     1921 gtggtgctcc agggccgctc gtccaaggac acgccggtgc gcgcgatcat gaccacggac
     1981 gtcgtcaccg tccgcctcgc cgataccagc gaccgctgca tgcagacggt caccgaaaag
     2041 cgcatccgcc acctgccggt gctcgatggc gaggccgtgc tcggcgtggt gtcgatcggt
     2101 gacctcgtca aggcggtgat cgaggaccag caggtggaac tcgaccagtt gcagcgctac
     2161 atcgcctcct gatcctcact tcgcataccg gccgccgcac tgcgcgtcct tgccgggccc
     2221 cagttccaac gtcgccagca gcgccgcggg cggggcgatg ctgccgaggg tgagcgcgat
     2281 cgcgccgcgc aggcccagcc gcttgtagtc gggatggaaa tgcggcgcct tgaacgtgcc
     2341 gcccatgatc aacggcgagc gcagcgcgag caggctccgg tccttcgggc gcgggcgcag
     2401 ggtgaggtcg agcgtttcgt cgcgcaggct gacgacgcct tcgccgacga tgatcgtgtc
     2461 ggtggtgtcg aaggcgagcg cgttcgcgcg catcaccccg tcctgcacgg cgaaatcgcc
     2521 gaacgcgcag cggatcggga tgcgcttgtc gccggtgagg aggaatttca gcgattcctc
     2581 gatgtcgagg ccggcgagtt ccatcaccag gttgctgacc tgcccgcgac ccatgccgag
     2641 ggcgacgctg ccctcggcac tgccgagcat cttcgcgatc gagttgcccc ggccggtgag
     2701 cgcgacgttg ccgccgaccc ggccgatcgc gtcgcgcgcc gactggatgc gtggcagcag
     2761 gcgcgcgagg tccaggccgc gggcggcgat gtccgcatgg gtccggatcg gcgattcgcg
     2821 cgcatccatg cgcacggtcg agcggatgtg gccggaggcc acgccgaaat ccagcggttc
     2881 cagccgcagc aggccatcgt ccaggcgcag gtgcacgtcc atgtcgtcca gcggcagctg
     2941 cggtgcttcg atgtgccggg ccttccagcg cacgtcggcg tccatcgagc gcagcttgtc
     3001 gagttcgtag ggatggtcgg ggagcacgcg cgccttcgcc tgttcgcgcg cggcttcggc
     3061 ttgctgttcc ggcgtcgcgg tttcgccggc gcccgcggag ggcggcttg
//
LOCUS       DATIQC010000179         3172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_47267, whole genome shotgun sequence.
ACCESSION   DATIQC010000179 DATIQC010000000
VERSION     DATIQC010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47267"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..758
                     /locus_tag="VLM17_03735"
     CDS             <1..758
                     /locus_tag="VLM17_03735"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSR64702.1"
                     /translation="VAARLPLVDWIFDGTPDEFMRRVGTLPLAHQPGERWLYHLACEI
                     TGVLVARVSGQPLSRFLQERLFAPLGMRDTAFFVRDADLDRLPTCYGRDFATGQQVVV
                     DPARGGQMARAPAFESGAGGLVSTVDDMAAFGRVLLGGGALDGARILARPTVELMTMD
                     QLTPAQKAASPFFPEFWADAGWGLGVGVVTARRDIAGVPGRFGWDGAFGTSWWVDPTE
                     GLVGVLMTQRRPDALAIPPLTRDFATTVYQSLA"
     gene            complement(813..2945)
                     /locus_tag="VLM17_03740"
     CDS             complement(813..2945)
                     /locus_tag="VLM17_03740"
                     /inference="COORDINATES: protein motif:HMM:NF019410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1631 family protein"
                     /protein_id="HSR64703.1"
                     /translation="MDATTTATQSVAGADQLFAEMQKAAVDRLGTALDAVMRQTDDYL
                     FDRSAQGAEGSELTALRDLRRARPQLRQAFESSVAAAFQRLRRGSMPSDPVRQELRLL
                     SEDDLEEQLASEQMVESLVRRHVASLELLDQRIAMLAERSALAVGENPVGPAALGQAM
                     RAALGTAELSTSVRIALCKFTEREFATALTPLYNWINARLADAGILPRLLPSTPSVEA
                     PAAVDAPAAADAAPAERAPTAETPSDHALFSSMVGMLQSWRQHVMPHAAEPRQATAAL
                     GMPQLMSTLSLLQTDPSAALEQALGDTRVSLAELLRREVLAGARRLGMGDELNLSTVQ
                     EDAVDLVGMLFDVLLDERDFEPDVRRKIGRMLVPYVKVAVQDRRMFVYKGHPARRFLN
                     AVAEACEGNHGDAPQERELLDHVDASIERLVAEFNEDVAIFETLEQELRAYMAQQRQR
                     IEIAERRAAETQRGRERLEAARTRAVADVDARRGERLLPDVLETLLAGYATQHLTQLG
                     LRGGADAPPYVQSLAALDGVIAAFDAAKSGIADALPLDRAALAQMLGSSGCVGDAAEA
                     AIDTLQRSLRQLATGATLADAGQLPAPVVPRAETPPPALELVGGTATLDYEPEAAERM
                     RALAVGTWVQLVGDSGRGEPAKVSWISPISSRLLFVNRRGARILVASVEELAAMEKIG
                     RIQLRPPGGAFDAAMQQMVGRLQTKIAA"
BASE COUNT          387 a         1146 c         1175 g          464 t
ORIGIN      
        1 aggtcgcggc gcggctgccg ctggtagact ggatcttcga cggcacgccc gacgaattca
       61 tgcgccgggt cggcaccctg cccctcgccc accagccggg cgagcgctgg ctgtaccacc
      121 tcgcctgcga gatcaccggc gtgctcgtcg cgcgcgtgag cgggcagccg ctgtcgcgct
      181 tcctgcagga gcgcctcttc gcgccgctgg gcatgcgcga caccgcgttc ttcgtccgcg
      241 acgccgacct cgaccgcctg ccgacctgct atggccgcga cttcgccacc ggccagcagg
      301 tggtggtgga cccggcccgc ggcgggcaga tggcgcgcgc accggccttc gaatcgggcg
      361 cgggcgggct ggtgtcgacc gtcgacgaca tggcggcgtt cggccgcgtg ctgctgggcg
      421 gcggcgcgct cgacggtgcg cgcatcctgg cgcggcccac ggtggaactg atgaccatgg
      481 accagctcac gccggcgcag aaggcggcgt cgccgttctt cccggagttc tgggcggacg
      541 ccggctgggg cctcggcgtg ggcgtggtca ccgcgcgccg cgacatcgcc ggcgtgcccg
      601 ggcgcttcgg ctgggacggc gcgttcggca cctcgtggtg ggtggatccg accgaaggcc
      661 tcgtgggcgt gctgatgacg cagcggcgcc cggacgcgct ggcgatcccg ccgctgaccc
      721 gggatttcgc gacgacggtg taccagtcgc tggcgtgacg cgatgtcgcg cgtgggacgg
      781 cgccgtccac gcccccgcgc ggtgacgtcc ggctaggcgg cgatcttcgt ctgcaggcga
      841 ccgaccatct gctgcatcgc ggcgtcgaag gcgccgcccg gggggcgcag ctggatgcgg
      901 ccgatcttct ccatcgcggc cagttcctcg accgaggcga cgaggatccg cgcgccgcgg
      961 cggttgacga acagcaggcg gctggagatc ggactgatcc acgacacctt ggccggttcg
     1021 ccacgcccgg agtcgccgac gagctgcacc cacgtcccca ccgcgagggc gcgcatgcgc
     1081 tcggccgctt ccggttcgta gtcgagcgtc gcggtgccgc cgaccagttc cagcgccggc
     1141 ggcggcgtct ccgcccgcgg cacgaccggc gccggcaact gcccggcgtc ggccagggtc
     1201 gcgccggtcg cgagctggcg caggctgcgc tgcagggtgt cgatggccgc ctcggccgcg
     1261 tcgccgacgc agcccgagct gcccagcatc tgcgccagcg cggcccggtc cagcggcaac
     1321 gcgtcggcga tgcccgactt cgcggcgtcg aacgcggcga tgacgccgtc gagggcggcc
     1381 agcgactgca cgtagggcgg cgcgtcggcg ccgccgcgca agccgagctg ggtcaggtgt
     1441 tgggtggcgt agccggccag cagggtttcg agcacgtccg gcaggaggcg ctcgccgcgg
     1501 cgtgcgtcga cgtcggcgac cgcacgcgtg cgcgccgcct cgaggcgttc gcgtccgcgc
     1561 tgcgtctcgg cggcgcggcg ctcggcgatt tcgatgcgct gccgctgctg cgccatgtag
     1621 gcgcgcagtt cctgctccag cgtttcgaag atggcgacgt cctcgttgaa ttccgccacc
     1681 agccgttcga tcgaggcgtc cacgtggtcg agcagttcgc gctcctgcgg cgcgtcgccg
     1741 tggttgcctt cgcaggcctc ggcgaccgcg ttgaggaagc ggcgcgcggg gtggcccttg
     1801 tagacgaaca tgcggcggtc ctgcaccgcg accttgacgt agggcaccag catgcggccg
     1861 atcttgcggc gcacgtccgg ctcgaagtcg cgctcgtcca gcagcacgtc gaacagcatg
     1921 ccgaccaggt cgacggcgtc ctcctgcacg gtcgagaggt tgagctcgtc gcccatgccg
     1981 agccggcgcg cgcccgccag cacttcccgg cgcagcagct cggccagcga cacgcgcgtg
     2041 tcgcccagcg cctgttccag ggcggccgac ggatcggtct gcagcagcga cagcgtcgac
     2101 atcagctgcg gcatgccgag cgcggcggtc gcctggcgcg gttcggccgc gtgcggcatc
     2161 acgtgctgcc gccacgactg cagcatgccg accatgctgg agaacagcgc atggtcgctc
     2221 ggcgtttcgg ccgtcggggc gcgctccgcg ggcgcggcat cggctgccgc gggtgcgtcc
     2281 accgcggccg gcgcttcgac cgacggcgtc gacggcaaca gccgcggcag gatcccggcg
     2341 tcggccaggc gcgcgttgat ccagttgtag agcggcgtca gcgcggtcgc gaattcgcgc
     2401 tcggtgaact tgcacagggc gatccgcacc gacgtggaca gctccgcggt gcccagcgca
     2461 gcgcgcatcg cctggccgag cgcggccggg ccgacgggat tctcgcccac cgccagcgcg
     2521 gaacgctcgg cgagcatcgc gatgcgctgg tcgagcagtt ccagcgaggc cacgtggcgc
     2581 ctgaccaggc tctcgaccat ctgctcggac gcgagctgtt cctcgaggtc gtcctcggac
     2641 agcagtctca gttcctgcct gacgggatcg gacggcatcg atccgcgtcg caggcgctgg
     2701 aaggccgcgg cgaccgacga ttcgaaggcc tggcgcagtt gcggccgggc gcgccgcagg
     2761 tcgcgcagcg ccgtcagctc gctgccctcg gcgccctggg ccgagcggtc gaacaggtag
     2821 tcgtcggtct gccgcatcac cgcgtccagc gcggtgccca ggcggtccac cgccgccttc
     2881 tgcatctcgg caaagagctg gtcggcgccc gcaaccgatt gcgtcgccgt ggtcgtcgcg
     2941 tccatgaaga tcgcccggtt gagcccccgt ggccgcctta tcccatgaat gcttcacggc
     3001 cggatgcggc cggcgaggcc caatgttcgg aactgggtgg cgcgtcactt attggcgcgg
     3061 tgcggcaagg ggtgacggtg ggtggcaatt gccgacgcgg ggccgggcgt ccgggcgacc
     3121 cggcctttcc ggcgctagaa ccgcgccgtc aggtccagca caccctccct ct
//
LOCUS       DATIQC010000180         1964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_47328, whole genome shotgun sequence.
ACCESSION   DATIQC010000180 DATIQC010000000
VERSION     DATIQC010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47328"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..376
                     /locus_tag="VLM17_03745"
     CDS             <1..376
                     /locus_tag="VLM17_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HSR64704.1"
                     /translation="IGSFAALPEAEALAAANKRIRNILKKAEAGIQAMVDPALLREPA
                     ERALAEAVEAAYGDTGPALTQGDYVAVLGRLARLRPQVDAFFDQVLVNADDAAVRGNR
                     LALLQRLADRLGSVAAIEHLSA"
     gene            599..>1964
                     /locus_tag="VLM17_03750"
     CDS             599..>1964
                     /locus_tag="VLM17_03750"
                     /inference="COORDINATES: protein motif:HMM:NF036554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HSR64705.1"
                     /translation="MGILARMRLPLARCVAILLLAAFACAARAATVARIDIRGLDETM
                     ARNVRDALSLQQAVGRDVSARRLAVLMRAAEDEARGALEPFGYYDPTITIARGGDGAA
                     PVVTITDQPGQPVRVRGFNVVVAGDGGRDADVRADIAGFQPRPGAVFAHAPYEAGKAR
                     ISRDLAQHGYFDAELARHQVAVTRAAHAADIDLAWTSGARYAFGAANFSQAPEAIIRP
                     QLLAKLVPWDPGDPYDQAQVDRLRQSLQALDYFGRIEVTPQPEAAQERRVPVGVQLTP
                     ARRSIYTAGLSYGTTSGGGVRLGVERRYLNSRGHKALAQVDWAQQRKTLTLQYRIPAF
                     AWLDGWYTLGAQAADEQNDYIDTRRVEFVASRSGELDRRLTVTASLHALRERWAYVTS
                     ARSAVVDYRYATFTYPALQADYVDVDDRLFPRRGIAGSLLLRGGVRTLGSDATFAQVH
                     ARASW"
BASE COUNT          265 a          749 c          696 g          254 t
ORIGIN      
        1 catcggcagc ttcgccgcgc tgccggaagc cgaagcgctg gcagccgcca acaagcgcat
       61 ccgcaacatc ctgaagaaag ccgaagctgg catccaggcg atggtcgatc cggcgctgct
      121 gcgcgagccc gcggaacgcg cactggccga agccgtcgaa gccgcctatg gcgataccgg
      181 ccccgcgttg acgcagggcg actacgtcgc cgtgctcggc cggctggcgc ggctgcgtcc
      241 gcaggtcgac gcgttcttcg accaggtgct ggtgaacgcc gacgacgccg cggtgcgcgg
      301 caaccgcctc gcgctgctgc agcgcctcgc cgaccggctc ggcagcgtcg cggcgatcga
      361 acacctgtcg gcctgacgcc ggtcctgcgc cgttcgccct ggcttgtcgc ggggtgaacg
      421 gaacgcatgc gtggtcgacg gcggactgcg cggcgcgcgg gtagccgtcg ccggttcgac
      481 acgttcgccg cggcgtgcgc ggccggcccg acggcgcgtc gacccggcgc caccacgcac
      541 ccgccggccg aagcacgccc gcacgacgtc gcgcgcgtta aacgcgcctt cgcacgccat
      601 gggtatcctc gcccgcatgc gcctgccgct cgcccgttgc gtcgccatcc tgttgctggc
      661 tgcattcgca tgcgccgcgc gggccgcgac cgtcgcgcgc atcgacatcc gtggcctgga
      721 cgagacgatg gcgcggaacg tgcgcgacgc gctgtcgctg cagcaggcgg tcggcaggga
      781 cgtcagcgcc cgccgcctgg ccgtgctgat gcgcgccgca gaggacgagg cccgcggcgc
      841 gctggagccg ttcggctact acgatccgac gatcacgatc gcgcgcggtg gcgacggcgc
      901 cgccccggtg gtcacgatca ccgaccagcc cggccaaccg gtgcgcgtgc gcggcttcaa
      961 cgtcgtcgtc gccggtgacg gcggccgcga cgccgacgtg cgcgccgaca tcgccgggtt
     1021 ccagccgcgc cccggcgcgg tgttcgcgca tgcgccctac gaggcgggca aggcgcggat
     1081 cagccgcgac ctcgcccagc acggctattt cgatgccgag cttgcgcgcc accaggtggc
     1141 ggtgacgcgc gccgcgcacg cggccgacat cgacctggcc tggaccagcg gcgcgcgcta
     1201 cgcgttcggt gcggccaact tcagccaggc gccggaggcg atcatccgtc cgcagctgct
     1261 cgcgaaactg gtgccgtggg acccgggcga tccctacgac caggcgcagg tcgaccgcct
     1321 gcgccagtcg ctgcaggcgc tggactactt cggccgcatc gaggtgaccc cgcaaccgga
     1381 ggcggcgcag gaacgccgcg tgcccgtggg cgtgcagctc acgccggcca ggcgcagcat
     1441 ctacaccgcc ggcctcagct acggcaccac cagcggcggc ggcgtgcgcc tgggcgtcga
     1501 gcgccgctac ctcaacagcc gcggccacaa ggcgctggcg caggtggact gggcgcagca
     1561 gcgcaagacg ctgaccctgc agtaccgcat tccggcgttc gcctggctgg acggctggta
     1621 caccctcggc gcgcaggcgg ccgacgagca gaacgattac atcgacacgc gccgggtcga
     1681 gttcgtcgcg agccgcagcg gcgagctcga ccgccggctc accgtcaccg cgtcgctgca
     1741 cgcgctgcgc gagcgctggg cctacgtcac gtcggcacgc agcgcggtcg tcgactaccg
     1801 ctacgccacc ttcacctatc ccgcgctgca ggccgactac gtggacgtcg acgaccgcct
     1861 gttcccgcgc cgcggcatcg ccggctcgct gttgctgcgc ggcggcgtgc ggacgctcgg
     1921 ttccgatgcg accttcgccc aggtgcacgc gcgcgccagc tggt
//
LOCUS       DATIQC010000181         5363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_82832, whole genome shotgun sequence.
ACCESSION   DATIQC010000181 DATIQC010000000
VERSION     DATIQC010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5363
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82832"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..391
                     /locus_tag="VLM17_03755"
     CDS             <1..391
                     /locus_tag="VLM17_03755"
                     /inference="COORDINATES: protein motif:HMM:NF027851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="general secretion pathway protein GspB"
                     /protein_id="HSR64706.1"
                     /translation="PAGRQNPGAAADVQGVAVKPGATTPPRANDGNTATPATAPDLVL
                     PPPSQLPRATDALQLSDLAADERKTLPPLKLSMHLWNDDPARRFVILDGYRLGEGDRI
                     GGLVVTAILRDGVLLDWNGRALKVPLR"
     gene            complement(486..827)
                     /locus_tag="VLM17_03760"
     CDS             complement(486..827)
                     /locus_tag="VLM17_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012438994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR64707.1"
                     /translation="MRHAAMDFATGFRVAFSVREAQAAVMTIAPGDSEGGPGNRHRGA
                     DQWLYVVEGEGLAIVDGREQPLRRGDLLVVEHGEEHEVRATGDAPLRTLNFYYPPAFD
                     REGDPVGPGKG"
     gene            975..1370
                     /locus_tag="VLM17_03765"
     CDS             975..1370
                     /locus_tag="VLM17_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020308436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HSR64708.1"
                     /translation="MNQNTQNDVARFVLRIALGALVLLHGIAKLRGGLAGIQGMVVAH
                     HWPAWLAYGVLLGEVVGPLMVLLGFFSRVGALLIAINMVFALMLVHMGQFGQLTDQGG
                     WALELQAMYLASAVALALLGPGRYSVNGR"
     gene            complement(1437..1808)
                     /locus_tag="VLM17_03770"
     CDS             complement(1437..1808)
                     /locus_tag="VLM17_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR64709.1"
                     /translation="MLAYATIGTNDLPRAAAFYDALLAEIGGRRMMEEPDYFIAWSNG
                     EGPGLGVTIPFDRQRASVGNGCMVALRAGSREQVDQLYAKALALGGSDEGAPGQRFDG
                     FYAAYFRDLDGNKLNCCYMGP"
     gene            1891..2154
                     /locus_tag="VLM17_03775"
     CDS             1891..2154
                     /locus_tag="VLM17_03775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64710.1"
                     /translation="MTRAFTRQSHPDMGQPLPTPNALPQGQPAGSLGTDALAALRDRL
                     TAVERRLQAIAPDAPNARAERDMLRREIHDLQQRLAGDPGAGR"
     gene            2288..2857
                     /gene="msrB"
                     /locus_tag="VLM17_03780"
     CDS             2288..2857
                     /gene="msrB"
                     /locus_tag="VLM17_03780"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007082852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HSR64711.1"
                     /translation="MNTPRSLSRRDFLATTTFAFAGVALGCSRQSAATQATPRPRQVT
                     IVEFAADGRRLRSMRLDRVVKTDAEWRAQLSPLDYQVTRHAGTERAFTGRYWDNHRAG
                     LYRCVCCGTALFDARTKFESGTGWPSFWQPIARENVVESEDRSFGMQRTAISCTRCDA
                     HLGHVFDDGPRPTGLRYCMNSAALRFVAT"
     gene            2872..3543
                     /gene="msrA"
                     /locus_tag="VLM17_03785"
     CDS             2872..3543
                     /gene="msrA"
                     /locus_tag="VLM17_03785"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSR64712.1"
                     /translation="MFRPRTLLPALGVFAALAACNLAGARSKPVALPAPRTDVAPARG
                     AHQAVAVFAGGCFWGVEAVFDHVRGVRDATSGYAGGRPGTARYETVSTGTTGHAESVK
                     VTYDPAQVSYGQLLQVYFSVAHDPTQLNRQSPDVGPQYRSEIFTTTPEQARVARAYIA
                     QLDAAKAFHAPIVTRVEPLQRFYPAEAHHQDYLAHHPDEPYIVYNDAPKLVALKQLFP
                     KLYAG"
     gene            3623..3844
                     /locus_tag="VLM17_03790"
     CDS             3623..3844
                     /locus_tag="VLM17_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HSR64713.1"
                     /translation="MQPLTFRLDREYIALDDLLKLTGVSDSGGAAKALVASGAVHVDG
                     AVELRKTCKLRAHQRVRAGDVEIHIVPAG"
     gene            complement(3922..4092)
                     /locus_tag="VLM17_03795"
     CDS             complement(3922..4092)
                     /locus_tag="VLM17_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64714.1"
                     /translation="MNVEARSIRATLRTRPVDWSERIAKGLLALALVGGVLWALAQGG
                     LSAPVDLASLFG"
     gene            4867..5151
                     /locus_tag="VLM17_03800"
     CDS             4867..5151
                     /locus_tag="VLM17_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64715.1"
                     /translation="MAWTRAELEDALSALDRDIDPLRTRASDMEAFWAEFEENARHIQ
                     READRDIWYAAAQIDRMLIRHGLMPRPGVYRLPRRSLPFASSDDGGVRVA"
     gene            complement(5173..>5363)
                     /locus_tag="VLM17_03805"
     CDS             complement(5173..>5363)
                     /locus_tag="VLM17_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64716.1"
                     /translation="RELNAEQVHTLHTLERFGWELKFIRRDEGGKLAVLFDPDARRYA
                     VLDVDGELDENPVFLRFR"
BASE COUNT          793 a         2033 c         1808 g          729 t
ORIGIN      
        1 accggcggga cgccaaaacc caggcgccgc tgcagacgtc caaggggtcg cggtcaagcc
       61 cggggcgaca acgccgccac gcgcgaacga cggcaacacc gccactccgg cgacggcgcc
      121 ggacctcgtg ctgccgccgc catcgcaact tccacgcgcg accgacgcgc tgcagctctc
      181 cgacctcgct gccgacgaac gcaagacgct gccgccgctc aagctcagca tgcacctgtg
      241 gaacgacgat ccggcgcgcc gcttcgtcat cctcgatggt tatcgcctcg gcgaaggcga
      301 tcgcatcggc ggcctcgtcg tcaccgcgat cctgcgcgac ggcgtgctgc tcgactggaa
      361 cgggcgcgcg ctgaaagtgc cgctgcgctg atgcaccgcc gacggtgccg ccacggccgg
      421 gcagccgcga ccgggcgagc ctcaggggct ttcgctcccc tgctgcgggt tctttccgcg
      481 gaaaactagc ctttccccgg ccccaccgga tcgccttcgc ggtcgaacgc gggcgggtag
      541 tagaagttca acgtgcgcag cggcgcatcg ccggtggcgc gcacctcatg ctcctcgccg
      601 tgctcgacca ccagcaggtc gccgcggcgc agcggctgtt cccggccgtc cacgatggcc
      661 aggccctcgc cctcgaccac gtacagccac tggtccgcgc cgcgatggcg gttgccgggg
      721 ccgccctcgc tgtcgccggg cgcgatggtc atgaccgcag cctgcgcctc gcgcacgctg
      781 aaggcgacgc ggaagccggt cgcgaaatcc attgccgcgt ggcgcatgcg catcctcccg
      841 tggaccagcg caggctggcc cgccacgcgt caacgcggga tgcaggcgac agccggacgc
      901 gccgcgtcta tgctcgcgcg gggttttcca ctcgacggcc gcgtgcggcc gccacatcca
      961 caaggggaac gcgcatgaac cagaacaccc agaacgacgt cgcccgcttc gtgctgcgca
     1021 tcgcgctcgg cgcgctggtg ctgctgcacg gcatcgccaa gctgcgcggc ggcctggccg
     1081 gcatccaggg catggtggtc gcgcaccact ggccggcctg gctcgcctac ggcgtgctgc
     1141 tcggcgaagt ggtcgggccg ttgatggtgc tgctcggctt cttctcgcgg gtcggcgcgc
     1201 tgctgatcgc gatcaacatg gtgttcgcgc tgatgctggt gcacatgggc cagttcggcc
     1261 agctcaccga ccagggcggc tgggcgctgg aactgcaggc gatgtacctg gcgagcgcgg
     1321 tcgcgctggc cctgctcggg ccgggacgct acagcgtcaa cggacgctga gccggagcct
     1381 cagagagccc cgctccggcg gggctttttt tcgtgcatgg cgcggcggac gggcgctcac
     1441 ggccccatgt agcagcagtt gagcttgttg ccgtcgaggt cgcggaagta ggcggcatag
     1501 aacccgtcga agcgctgtcc cggcgcgccc tcgtcgctgc cgccgagcgc gagcgccttc
     1561 gcgtacagct ggtcgacctg ttcgcggctg ccggcccgca gcgccaccat gcagccgttg
     1621 ccgacgctcg cgcgctggcg gtcgaaggga atggtgacac ccaggcccgg gccttcgccg
     1681 ttgctccagg cgatgaagta atccggctcc tccatcatcc gcctgccgcc gatttcggcg
     1741 agcagcgcgt cgtagaaggc cgcggcgcgc ggcaggtcgt tggtcccgat ggtggcgtag
     1801 gcgagcatgg cgaagctccg taaaagagga gcgcagccta cacccgcgcg cgacgcccgc
     1861 cgacctaggc tgggcggcga ggtggccacc atgacccgcg ccttcacccg ccagagccat
     1921 cccgacatgg ggcaaccgct gccgacgccg aacgcgctgc cgcaggggca gcccgccggc
     1981 agcctcggca ccgacgcact ggccgcgctg cgcgaccgcc tgaccgccgt cgaacgccgg
     2041 ctgcaggcga ttgccccgga tgcccccaat gcgcgcgccg aacgcgacat gctccgccgg
     2101 gagatccacg acctccagca gcgactggcc ggcgatcccg gcgccggtcg ctgatcgcgc
     2161 cgggcgggtc ggcgggcatg gcggaggagc gaacctccgc cgcccggcgc ggtccatttc
     2221 cccgccccgg gatcatcccg gcgcccgcac gctgcatccg cccatccgca gccacgtgac
     2281 cgtcgccatg aacacgccca ggtccctctc ccgccgcgac ttcctcgcca ccaccacctt
     2341 cgccttcgcc ggcgtcgccc tcggctgcag ccggcaaagc gccgccaccc aggcgacacc
     2401 acgcccgagg caggtgacca tcgtcgagtt cgcggccgac ggccgtcgcc tgcgcagcat
     2461 gcgcctcgac cgcgtggtga agacggacgc cgagtggcgc gcgcagctgt cgccgctgga
     2521 ctaccaggtc acccgccacg ccggcaccga acgcgccttc accgggcgct actgggacaa
     2581 ccaccgcgcc ggcctgtacc gctgcgtgtg ttgcggcacc gccttgttcg atgcccggac
     2641 caagttcgaa tcgggcacgg gctggccgag cttctggcag ccgatcgcgc gcgagaatgt
     2701 cgtcgagagc gaggaccgca gcttcggcat gcagcgcacc gcgatttcct gcacccgctg
     2761 cgacgcgcac ctcggccacg tcttcgacga cggcccgcgc ccgaccgggc tgcgctactg
     2821 catgaattcc gccgcgctgc gcttcgtcgc gacctgaccc gaggatcgac catgttccgt
     2881 ccacgcaccc tcctgcccgc gctcggcgtg ttcgccgccc tcgccgcctg caacctcgcc
     2941 ggcgcgcgca gcaagccggt cgcgctgccc gctccgagga ccgacgtcgc gccggcgcgc
     3001 ggcgcgcacc aggccgtggc ggtgttcgcc ggtggctgct tctggggcgt ggaagcggtg
     3061 ttcgaccacg tgcgcggggt acgggacgcg acctccggat atgccggggg ccggcccggc
     3121 accgcccgct acgagaccgt cagcaccggc accaccgggc atgccgaatc ggtcaaggtc
     3181 acctacgacc ccgcgcaggt gagctacggc cagctgctcc aggtgtattt ctcggtggcg
     3241 cacgatccga cccagctcaa ccgccagtcg cccgacgtcg ggccccagta ccgctcggaa
     3301 atcttcacca ccacgccgga acaggcgcgc gtcgccaggg cgtacatcgc gcagctcgac
     3361 gccgcgaagg cattccatgc gccgatcgtc acccgggtcg aaccgctgca gcgcttctac
     3421 cccgccgagg cccaccacca ggactacctc gcgcaccacc cggacgagcc gtacatcgtc
     3481 tacaacgacg cgcccaagct ggtggcgctg aagcagctgt tcccgaagct ctacgcgggc
     3541 tgagcctggc cacggcgcag cgcgcgcgcg ggcggaagcg gcgcgcgtgc taacgtcggc
     3601 acgaaccgcc acgcgcccgc ccatgcagcc actcaccttc cggctcgatc gcgaatacat
     3661 cgcgctcgac gacctgctca agctcaccgg cgtcagcgac agcggtggcg cggccaaggc
     3721 gctggtggcg agcggcgcgg tccatgtcga tggcgcggtg gaactgcgca agacctgcaa
     3781 gctgcgcgcg caccagcgcg tgcgcgcggg cgacgtcgaa atccacatcg tcccggccgg
     3841 ttgaaggcac aaaaaaagac gcctcgcggc gtcttgaagc tcggcggcag gcggagcagc
     3901 ctgccgcgcg tccctggagt tctagccgaa caggctggcg aggtcgaccg gagccgacag
     3961 gccgccctgc gccagcgccc acagcacgcc acccaccagc gccagcgcga gcaggccctt
     4021 ggcgatgcgt tcgctccagt ccaccggacg ggtgcggagc gtggcgcgga tgctgcgggc
     4081 ttcgacgttc atgtgggatc ccctttgctg ggggccatca gacgcccccc ggcgcgtgaa
     4141 tgtccgcgat gccgatcaca ggacgcgcat ccggtcggac gctgcggggc gagtctgcgg
     4201 aacggaccac atgatcgcat gcccctggtt tcttcacgcc gtcttggcga aagtgtgcgg
     4261 ggcgcccatt cagcgaagtg aggcccggcg ccgatctgca gcaaggcctt tgccccgcgc
     4321 gaagcgcgcc gatcggccag cgaaccggcg acgagccggg cacggtcgtg tgggccctgc
     4381 gttcggccgc cgccaggtcc gtggcggcgc gccgcgtcgc cgcgcccgcc agcgaccgcc
     4441 cacgagcgga tgggcgacgc ctccggccca cgccctccct ggttgccgtt cgcgagagga
     4501 cgctcgccat cgcgacccgc gcgtggcgag caccgccagc gcaccgctgc gccctgccgc
     4561 gcggcaacgt ggaaacgcga tcgaccgtcg accagcaccg caccccgacc ccttggccgt
     4621 gctggtcgtt gacctgcctg aagtgatcga ggccgacgac catcaggccg accagggcgg
     4681 tgcgcaagtt cgccaatgcc ggccggctgc acgccgttcg atcgcctcgg cctcgcgtgg
     4741 cggctcgcgg acacttcgac cggctgaccg gttcagccgc gccgtcggcc gcttcacgaa
     4801 gcgaggaagc gggccttgcc atcctctccg cacgcagcac gcgatcaccg aaaaaaggag
     4861 cagcccatgg cctggacccg cgccgaactc gaagacgcgc tgagcgcgct cgatcgcgac
     4921 atcgacccgc tgcgcacgcg cgcctcggac atggaggcgt tctgggcgga gttcgaggag
     4981 aacgcccgcc acatccagcg cgaagccgat cgcgacatct ggtacgcggc cgcgcagatc
     5041 gaccgcatgc tgatccgcca cgggctgatg ccgcggcccg gcgtctaccg gctgccgcgg
     5101 cggagcctgc ccttcgcctc cagcgacgac ggcggcgtgc gcgtggcctg aagccgcgcg
     5161 ccgcgccgct gctcagcgga agcgcaggaa gaccgggttt tcgtcgagct cgccgtcgac
     5221 gtcgaggacg gcatagcggc gtgcgtccgg gtcgaacagc accgccagct tgccgccctc
     5281 gtcgcggcgg atgaacttca gttcccagcc gaaacgctcg agcgtgtgca gcgtgtgcac
     5341 ctgctccgca ttgagttccc gct
//
LOCUS       DATIQC010000182         2374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_118052, whole genome shotgun sequence.
ACCESSION   DATIQC010000182 DATIQC010000000
VERSION     DATIQC010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2374
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118052"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            5..925
                     /gene="rfbD"
                     /locus_tag="VLM17_03810"
     CDS             5..925
                     /gene="rfbD"
                     /locus_tag="VLM17_03810"
                     /EC_number="1.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008831 - dTDP-4-dehydrorhamnose reductase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HSR64717.1"
                     /translation="MSAAAAARILLLGADGQLGTELRRSLAPLGTIVPATLSGALGGE
                     SCERADFAEPGSLPALVDRVAPDMVVNAAAHTAVDRAEQERDLAWRINAEAPGALAQA
                     CVRRGAWLVHYSTDYVFDGRGTRPYREDDEPDPPGVYGASKLAGEEAVRASGARHLLF
                     RTAWVYAAHSHNFLRTMLRLGAERDVLRVVADQVGTPTPAPLIADVTAHALRHLPAHP
                     GTWHLTATGQTSWHGFAEAIFAGAVARGLLQRAPRVEPIATADYPTPAARPAYSVLDT
                     TRLRADFGIGLPSWQDGLGRVLDELGGHAG"
     gene            1021..>2374
                     /locus_tag="VLM17_03815"
     CDS             1021..>2374
                     /locus_tag="VLM17_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSR64718.1"
                     /translation="MAATNVDVAAYLKRDEFKELKLSPDGAYYAASVPLADHSLLAVV
                     RRADNKVTATFNLGKDDYVATFAWVSPGRLLIESARKFGELDQPALTGNIYAMNADGS
                     DKAILVGQDVNVNSVDSHIQQKKTETIAAFLLDPLPDDDRTVLISVEPFTGDSFSRVE
                     RMDVFSGRRILVMRAPVQNANFVTDGNGDVRFAYGYDAANHHKLYYRSGAGAADWTHA
                     AGWTLLNDENASSHVEVPLGFSADGRYAYLEVEQPQGPDAVVALDTRDGSRKTLVQDD
                     DSDPVGVIRSLGTPYPAPVGVFINDGKPRTAFFDDNAPEARLYRSLEAAFAGQSVVIT
                     SKTADGHLALVEVSSDRNPGDFYLFDTVNKKADFLTARRSWLDPEAMAEVRPFQMEAR
                     DGQVLHGFLTVPHGSDGKRLPLVVLPHGGPIGIADAWGFDDDAQLLAAAGYGVLQVNF
                     R"
BASE COUNT          359 a          843 c          831 g          341 t
ORIGIN      
        1 cgccgtgagc gccgcggcgg ccgcgcggat cctcctgctc ggggccgacg ggcagctcgg
       61 cacggagttg cgccgcagcc tggcgccgct gggcacgatc gtgcccgcca cgctgtccgg
      121 cgcgctcggc ggtgagtcct gcgagcgcgc ggatttcgcc gagccgggca gtctcccggc
      181 gctggtcgac cgcgttgcgc cggacatggt cgtcaacgcc gccgcccaca ctgccgtcga
      241 ccgcgccgag caggagcgcg acctggcctg gcgcatcaac gcggaggcgc cgggtgcgct
      301 ggcgcaggcc tgcgtgcggc gcggcgcctg gctggtgcat tactcgaccg actatgtgtt
      361 cgacggccgc ggcacgcgcc cctaccgcga ggacgacgaa ccggacccgc ccggcgtcta
      421 cggcgccagc aagctcgccg gcgaggaggc ggtgcgcgcg agcggcgcgc gccacctgct
      481 cttccgaacc gcgtgggtgt atgcggcgca cagccacaac ttcctgcgca cgatgctgcg
      541 cctgggcgcc gagcgcgacg tgctgcgcgt ggtcgccgac caggtcggta cgccgacgcc
      601 ggcgccgctg atcgccgacg tgacggccca tgcgttacgc cacctccccg cgcatccggg
      661 cacctggcac ctcaccgcca ccggccagac cagctggcac ggcttcgcgg aggcgatctt
      721 cgccggggcc gtggcgcggg ggctgctgca acgcgcgccg cgcgtcgaac cgatcgcgac
      781 cgccgactat ccgacgccgg ccgcgcgccc ggcgtattcg gtgctcgaca ccacccgcct
      841 tcgcgccgat ttcggcatcg gcctgccttc gtggcaggat gggctggggc gcgtgctcga
      901 cgaactgggc gggcacgcgg gatagcgcgg aaacggatcc gcgcgttgtt tctatggaag
      961 gggaaaggaa tgcgaactct ggtcctggcc gggatgctgg tggcgtgcgc gtgtccggcc
     1021 atggccgcca cgaacgtcga cgtggcggcc tacctcaagc gtgacgaatt caaggaactc
     1081 aagctctcgc ccgacggcgc ctactacgcc gcctcggtgc cgctggccga ccattcgctg
     1141 ctggcggtgg tgcgccgtgc ggacaacaag gtcaccgcga ccttcaacct cggcaaggac
     1201 gactacgtcg cgaccttcgc ctgggtgagt cccggccggt tgctgatcga gagcgcccgc
     1261 aagttcggcg agctcgacca gccggcgctg acggggaaca tctatgcgat gaacgccgac
     1321 ggcagcgaca aggcgatcct ggtcggccag gacgtcaacg tcaattcggt cgactcgcac
     1381 atccagcaga agaagaccga aaccatcgcg gcgttcctcc tggatccgct cccggacgac
     1441 gaccgcaccg tgctgatctc ggtcgagccc ttcaccggcg acagcttcag ccgcgtcgaa
     1501 cggatggacg tcttttccgg gcgccgcatc ctggtgatgc gggcgccggt gcagaacgcc
     1561 aacttcgtga ccgacgggaa cggagatgtc cgcttcgcct acgggtacga cgcggcgaac
     1621 caccacaagc tctactaccg cagcggcgcc ggcgccgcgg actggaccca tgccgcgggc
     1681 tggaccttgc tcaacgacga aaacgccagc agccatgtcg aagtgccgct gggcttttcg
     1741 gccgacggcc ggtacgcgta cctggaggtc gagcagcccc aggggccgga tgcggtggtc
     1801 gccctggata cccgggacgg cagccgcaag accctcgtgc aggacgacga cagcgatccg
     1861 gtaggcgtca tccgttcgct cggcacgccc taccccgcgc cggtcggcgt gttcatcaac
     1921 gacggcaagc cgcgcacggc cttcttcgac gacaacgcac cggaggcgcg gctgtatcgc
     1981 agcctggaag cggcgttcgc cggccagtcg gtggtgatca cgtccaagac cgcggacggc
     2041 cacctcgcgc tcgtcgaagt cagcagcgac cgcaacccgg gcgacttcta cctcttcgac
     2101 accgtcaaca agaaggcgga tttcctgacc gcccggcgca gctggctgga tcccgaggcg
     2161 atggcggaag tccggccgtt ccagatggag gcgcgggacg ggcaggtgct gcacggcttc
     2221 ctgaccgtgc cgcacggctc ggacggcaag cgcctgccgc tggtggtgct gccgcatggc
     2281 ggtcccatcg gcatcgccga tgcgtggggg ttcgacgacg atgcgcagct gctggccgcc
     2341 gcgggctatg gcgtgctgca ggtgaatttc cgcg
//
LOCUS       DATIQC010000183         7059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_47477, whole genome shotgun sequence.
ACCESSION   DATIQC010000183 DATIQC010000000
VERSION     DATIQC010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7059
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47477"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1316)
                     /locus_tag="VLM17_03820"
     CDS             complement(<1..1316)
                     /locus_tag="VLM17_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HSR64719.1"
                     /translation="MRQVLSGHGASRGSALGRARIRLPHALEVAEERIAPADVDAELA
                     RMHGAIEVVRAEMRRLRERLQGALASEIGEFLDLHALLLDDPELLQGLDELIRTGPYT
                     ADYALRVQRDRIASVFHDMDDAYLRSRIDDIDQVIGRLHAALHRRETDVSGIAGEILV
                     ADNVAPAELAQLQAQGVLAVVTTGGSALSHSAILARSLHLPLVVGAAQALVKLNDGDV
                     LVIDGASGLVVRDPGPDDLRAHRSRVREGKRERRELNRLRREPSRTRDGIDIKLWANA
                     ESREDVAEAHALGAAGVGLYRTEFLFLGSRTLPDEDSQFRAYRDLVLGMTGRTVTIRT
                     LDVGADKADSTGLALADEPNPALGVRGVRLSLRRPVVFETQLRAIVRASGYGPVRVLL
                     PMIACREEVLGVRATLDRIVAEVRAAGHATAEQVPLGAMIEVPAAAL"
     gene            complement(1316..1585)
                     /locus_tag="VLM17_03825"
     CDS             complement(1316..1585)
                     /locus_tag="VLM17_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HSR64720.1"
                     /translation="MLERTLLVSNRLGLHARATAKLVQLLSGFRCSATIGARGREVNA
                     KSIMGVMLLAAGQGTEVLLRVDGEDEQAAADAVAALFANRFDEEN"
     gene            complement(1578..1970)
                     /locus_tag="VLM17_03830"
     CDS             complement(1578..1970)
                     /locus_tag="VLM17_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017154797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose IIA subunit family protein"
                     /protein_id="HSR64721.1"
                     /translation="MAVGILLVTHEGIGCALLAVATRLLRQLPLRAEAFEVAFDAEPL
                     ALLPAASAALRRVDGGDGVLVLTDLYGATPSNLAAQLARLGTPVRRVSALSLPMLLRV
                     LNYADLGLDELPRVAAAGTRNGAIIDDA"
     gene            complement(2010..3995)
                     /locus_tag="VLM17_03835"
     CDS             complement(2010..3995)
                     /locus_tag="VLM17_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HSR64722.1"
                     /translation="MQHGNGVGARRARWWTGLALAVAGFAPAAFAASLDPAVLPAIQQ
                     ATFEVVAAKPVKDPLQYDKPLPLELIPFQERNDKYYSIGTAFAIGDGRYVTAAHVLLV
                     GAGSLWGPPALRDGQGRVYAIDKVRKFSLERDFVEFTLVQPPNGAALALDTAPAQGQT
                     VFSVGNAYGTGVVIRDGLYTSDTPEQEDGRWKWMRFSAPASPGNSGGPLVDQAGKVIG
                     VVLAKSPNENLNYALPIGIVRDAPEVAGIDRRIPYQFDVFDSTLSNTLKSSFALPLPL
                     ADFYREFGERADDFVDLQLKALLAKDPQRTFPNGAGSVELLHSIPSMGDFPRLIVRDN
                     SGKWGLADEQSEDFKLTGNGYVSIGSQGKNLMFHLRRPDELAADALYADPKVPMDLLL
                     RSGFAKRTVGGQNVQITSLGSPTDRGTRVDAWGRRWDVWQWPLPYANAVLVVAALPVP
                     DGYVGIARYAEAMQVHDQRINLLALTDFTYANYDGTFAQWRDFLRHTELLPAPLKDTR
                     VDIDYGRRFAYASRRGRLEYTPELQAIQPDSVLTLGFAFYPDHGKVVWDVAELWASGK
                     ATDSNYLMVVRNAAPAAELGDDDRDDWDRVSRRRHPYDGVARNDDDTTKATGVVGPVA
                     DANPQVLDTATIAVEGARTQEDMDARLGLLLKGLQLP"
     gene            complement(4108..4983)
                     /gene="rapZ"
                     /locus_tag="VLM17_03840"
     CDS             complement(4108..4983)
                     /gene="rapZ"
                     /locus_tag="VLM17_03840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005993216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HSR64723.1"
                     /translation="MNAQHAPVLVIVSGMSGSGKSVALNTFEDLGFYCVDNLPAELLP
                     EFVRSVARDDGAPEKLAVGIDVRNRHSDLANIPEWLSAVGALGLDPRLVFFETDDAVL
                     LKRYADTRRRHPLSHLGLSLADAISLERQVLKPLRQVADSVIDTSALNVHQLRRQVIT
                     DFGLVADHALSLLFESFAYRRGVPADADFVFDARVLPNPHWNPELRPLSGRDAQVRDY
                     LETQEDVRAYASQVEAFLDGWLPRLRSETRSYATIAFGCSGGRHRSVYLAERLARHFR
                     EAGWAEVAVHHRELD"
     gene            complement(4980..5942)
                     /gene="hprK"
                     /locus_tag="VLM17_03845"
     CDS             complement(4980..5942)
                     /gene="hprK"
                     /locus_tag="VLM17_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004425835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr(Ser) kinase/phosphatase"
                     /protein_id="HSR64724.1"
                     /translation="MSPPAPLAISAGELFEQLRERLALRWAAGQQGVSRVLESVDTVA
                     RRPSLAGYLNTIYPNKVQILGTEELAWLDDLDARQRWDTIARIIGSGPLALVISKDQG
                     CPADLRDAAEESGTPLWVSPRRGHELLNHLQYHLARKLAPRVTLHGVFMEIYSIGVLI
                     TGESGSGKSELALELITRGHRLVADDAPEFTQIAPDVLDGTSPELLQDMLEVRGLGVL
                     NVRQMFGDTAVKKNKYLRLIVHLTKPHLEPQPGGMERITGDLGVRRVLDLDVPIITLP
                     VMPGRNLAVLAEAATRAHILRAKGVDPAAAFMARHSHFLERSSP"
     gene            complement(5939..6400)
                     /locus_tag="VLM17_03850"
     CDS             complement(5939..6400)
                     /locus_tag="VLM17_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HSR64725.1"
                     /translation="MPLSELLSADRIVILVEPADRERVLEAAARLLAGDAAGAVGAIG
                     DSLRQRERLGSTAIGHGVAIPHGRTDAFAEARAAFLRLAPGVDFDAGDGQPVDLVFAM
                     AVPAHFTQQHLQLLSELAERFGDAGFRDALRGAADADALCGVLLGPVRPVA"
     gene            complement(6414..6746)
                     /gene="raiA"
                     /locus_tag="VLM17_03855"
     CDS             complement(6414..6746)
                     /gene="raiA"
                     /locus_tag="VLM17_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005913379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_component: GO:0022626 - cytosolic ribosome [Evidence
                     IEA];
                     GO_function: GO:0045182 - translation regulator activity
                     [Evidence IEA];
                     GO_process: GO:0009386 - translational attenuation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HSR64726.1"
                     /translation="MRIETYGQQIEITPPLRDYVQDKLARLERHFDHRPIEVKVQLRV
                     DKPQHCAEATVNLAGGRAAHADASGPDMYAAIDLLADKLDRLLVKHKEKVVDHHRGES
                     PARKGDFA"
     gene            complement(6838..>7059)
                     /locus_tag="VLM17_03860"
     CDS             complement(6838..>7059)
                     /locus_tag="VLM17_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003478127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HSR64727.1"
                     /translation="SGIETGGGGETSSTAIQSMIRALIDAENPRKPLSDARLAALLKA
                     GGVPVARRTVAKYREAMSIPSSHERVRIG"
BASE COUNT          947 a         2434 c         2646 g         1032 t
ORIGIN      
        1 agcgcggccg ccggcacctc gatcatcgcg ccgagcggta cctgctcggc ggtcgcgtgg
       61 ccggccgcgc gtacttcggc gacgatccgg tcgagcgtcg cccgcacccc cagaacctcc
      121 tcgcggcagg cgatcatcgg cagcagcacg cgcacgggcc catagcccga tgcgcgcacg
      181 atcgcgcgca gctgggtctc gaacaccacc ggccgccgca gcgacaggcg cacgccgcgc
      241 acgccgagcg cggggttggg ctcgtcggcg agcgcgaggc cggtgctgtc ggccttgtcg
      301 gcgccgacgt ccagggtgcg gatcgtcacc gtgcgcccgg tcatgccgag cacgaggtcg
      361 cggtaggcgc ggaactggct gtcctcgtcg ggcagcgtgc ggctgccgag gaacaggaat
      421 tcggtgcgat agaggcccac gccggcggcg ccgagcgcat gcgcctcggc cacgtcctcg
      481 cgcgattcgg cgttcgccca cagcttgatg tcgatgccgt cgcgggtgcg cgacggttcg
      541 cggcgcaggc ggttgagctc gcgccgctcg cgcttgccct cgcgcacgcg ggagcgatgc
      601 gcacgcaggt cgtcggggcc gggatcgcgc accaccaggc cgctggcgcc gtcgatcacg
      661 aggacgtcgc cgtcgttgag cttcaccagc gcctgcgccg cgccgaccac cagcggcagg
      721 tgcaggctgc gcgcgaggat ggcgctgtgc gagagcgcgc tgccgccggt ggtgaccacc
      781 gcgagcacgc cctgcgcctg cagctgcgcc agttccgccg gcgcgacgtt gtcggcgacc
      841 aggatctcgc cggcgatgcc gctgacgtcg gtctcgcgcc ggtgcagcgc cgcgtgcagg
      901 cggccgatca cctggtcgat gtcgtcgatg cggctgcgca ggtaggcgtc gtccatgtcg
      961 tggaagacgc tggcgatgcg gtcgcgctgc acgcgcagcg cgtagtccgc ggtgtacggg
     1021 ccggtgcgga tcagttcgtc gaggccctgc agcagctcgg gatcgtcgag cagcagcgcg
     1081 tgcaggtcga ggaattcgcc gatctcgctg gcgagcgcgc cctgcaggcg ctcgcgcagg
     1141 cggcgcatct ccgcgcgcac gacctcgatc gccccgtgca tgcgcgccag ttcggcgtcc
     1201 acgtccgcgg gggcgatgcg ctcctcggcg acctcgagcg cgtgcggcag ccggatccgg
     1261 gcgcggccga gcgcgctgcc gcgcgaggcg ccgtgcccgg acaggacctg ccgcatcagt
     1321 tctcctcgtc gaagcggttg gcgaacagcg ccgcgaccgc gtcggcggcg gcctgctcgt
     1381 cctcgccgtc gacgcgcagc agcacctcgg tgccctggcc ggcggcaagc agcatcacgc
     1441 ccatgatgct cttggcgttg acctcgcggc cgcgcgcgcc gatcgtggcg ctgcagcgga
     1501 agcccgacag cagctgcacc agcttggcgg tggcgcgcgc gtgcaggccg agcctgttgc
     1561 tgacgaggag ggtgcgttca agcatcgtcg atgatggctc cgttgcgggt gccggcggcg
     1621 gccacgcgcg gcagttcgtc gagcccgagg tcggcgtagt tcagcacccg cagcagcatc
     1681 ggcaggctca gcgcggacac ccgccgcacc ggcgtgccga ggcgggcgag ctgggcggcg
     1741 aggttgctcg gggtggcgcc gtagaggtcg gtcagcacca gcacgccgtc accgccgtcg
     1801 acccgccgca gcgccgcgct cgcggccggc agcagcgcga ggggctcggc gtcgaaggcg
     1861 acctcgaacg cctccgcgcg cagcggcaac tggcgcagca gccgcgtcgc caccgcgagc
     1921 agcgcgcagc cgatgccttc atgggtgacg agcaggatgc cgacggccat gggatgaagg
     1981 tagcagaggc ggcggtggct ggccgtggct cacggcagct gcaggccctt cagcagcagg
     2041 ccgagccgcg cgtccatgtc ctcctgggtg cgcgcgccct cgacggcgat ggtggcggtg
     2101 tccagcacct gcgggttcgc gtcggcgacc ggtccgacca cgccggtggc cttggtggtg
     2161 tcgtcgtcgt tgcgcgccac cccgtcgtaa ggatggcgcc ggcgggaaac gcggtcccag
     2221 tcgtcgcggt cgtcgtcgcc gagttccgcc gccggcgcgg cgttgcgcac caccatcagg
     2281 taattgctgt cggtggcctt gcccgaggcc cacagctcgg cgacgtccca cacgaccttg
     2341 ccgtggtccg ggtagaacgc gaagccgagg gtcagcacgc tgtccggctg gatcgcctgc
     2401 agctccggcg tgtattccag gcgcccccgc cgcgaggcat aggcgaaacg cctgccgtag
     2461 tcgatgtcca cgcgggtgtc cttcagcggc gccggcagca gctcggtgtg gcgcaggaag
     2521 tcgcgccact gcgcgaaggt gccgtcgtag ttggcgtagg tgaagtcggt gagcgcgagc
     2581 aggttgatcc gctggtcgtg gacctgcatc gcttcggcgt aacgggcgat cccgacgtag
     2641 ccgtccggca ccggcagggc ggcgaccacc aggaccgcgt tggcgtaggg cagcggccat
     2701 tgccagacgt cccagcgacg gccccaggcg tcgacgcgcg tgccgcggtc ggtcggcgaa
     2761 cccagcgagg tgatctgcac gttctggccg ccgaccgtgc gcttggcgaa gccgctgcgc
     2821 agcagcaggt ccatcggcac cttcgggtcc gcgtacagcg cgtcggcggc gagctcgtcc
     2881 gggcggcgca ggtggaacat caggttcttg ccctgcgagc cgatgctcac gtagccgttg
     2941 ccggtgagct tgaagtcctc gctctgctcg tcagccaggc cccacttgcc gctgttgtca
     3001 cgcacgatca ggcgcgggaa gtcgcccatc gacggaatcg aatgcagcag ttcgaccgag
     3061 ccggcaccgt tgggaaaggt gcgctgcggg tccttggcga gcagcgcctt gagctggagg
     3121 tcgacgaaat cgtcggcgcg ctcgccgaat tcgcggtaga agtcggccag cggcagcggc
     3181 agcgcgaaac tggacttcag cgtgttgctg agcgtgctgt cgaagacgtc gaactggtag
     3241 ggaatgcgcc ggtcgatgcc ggcgacctcg ggcgcatcgc gcacgatgcc gatcggcaat
     3301 gcgtagttga ggttctcgtt gggcgacttg gccagcacca cgccgatcac cttgccggcc
     3361 tggtcgacca gcgggccgcc gctgttgccg ggcgaggcgg gcgcggagaa gcgcatccac
     3421 ttccagcggc cgtcctcctg ctcgggcgtg tccgaggtgt acaggccgtc gcggatcacc
     3481 accccggtcc cgtacgcatt gccgacggag aacacggtct gcccctgcgc cggcgcggtg
     3541 tccagcgcca gcgccgcgcc gttcggcggc tgcacgaggg tgaactcgac gaagtcgcgc
     3601 tcgagcgaga acttgcgcac cttgtcgatc gcgtagacgc gcccctggcc gtcgcgcagc
     3661 gcgggcgggc cccacaggct gccggcgccg accagcagca cgtgcgccgc ggtgacgtag
     3721 cggccgtcgc cgatcgcgaa ggcggtgccg atggagtagt acttgtcgtt gcgttcctgg
     3781 aacgggatca gttccagcgg cagcggcttg tcgtactgca gcgggtcctt gaccggcttg
     3841 gccgcgacca cctcgaaggt cgcctgctgg atcgccggca gcaccgccgg atccaggctg
     3901 gcggcgaaag ccgcgggcgc gaagcccgcc acggcgagcg ccaggcccgt ccaccagcgc
     3961 gcgcggcgcg cgcccacccc attgccgtgc tgcatgccat ccccttttgc cggtgctcca
     4021 tggaaacgcc gtggctgcag ggtccgcggc gcatgctcca tcgtgccagc ggggtggccg
     4081 ggcgatcaat cggcgggtgg acgccgctca gtccagttcg cgatggtgca ccgcgacttc
     4141 ggcccagccg gcctcgcgga aatgccgggc gaggcgctcg gcgaggtaca ccgaacggtg
     4201 gcggccgccg ctgcagccga acgcgatcgt cgcgtagctg cgcgtttccg agcgcaggcg
     4261 cggcagccag ccgtcgagga aggcctcgac ctggctcgcg taggcgcgca cgtcctcctg
     4321 cgtctcgagg tagtcgcgca cctgcgcgtc gcggccggac aacgggcgca gctcggggtt
     4381 ccagtgcggg ttgggcagca cccgggcgtc gaacacgaag tcggcgtcgg ccggcacccc
     4441 gcgccggtag gcgaaggatt cgaacagcag cgacagcgcg tggtcggcga ccaggccgaa
     4501 gtcggtgatc acctgccggc gcaactggtg cacgttcagc gcgctggtgt cgatcacgct
     4561 gtcggcgacc tgccgcagcg gcttgagcac ctgtcgctcg agcgagatcg cgtcggccag
     4621 cgacaggccg aggtggctga gcggatggcg gcggcgggtg tccgcatagc gcttgagcag
     4681 caccgcgtcg tcggtctcga agaacaccag gcgcgggtcg aggccgagcg cgccgaccgc
     4741 cgacagccac tccgggatgt tggcgaggtc gctgtggcgg ttgcgcacgt cgatgccgac
     4801 cgcgagcttc tccggcgcgc cgtcgtcgcg cgcgacgctg cgcacgaact cggggagcag
     4861 ttccgccggc aggttgtcga cgcaatagaa gccgaggtcc tcgaaggtgt tcagcgccac
     4921 cgacttgccc gagccggaca tgccgctgac gatcaccagc accggcgcgt gctgcgcgtt
     4981 caaggcgatg agcgctcgag gaaatggctg tgccgggcca tgaaggccgc cgccggatcg
     5041 acgcccttgg cgcgcaggat gtgcgcgcgg gtggcggctt cggccagcac cgcgaggttg
     5101 cggccgggca tcaccggcag ggtgatgatc ggcacgtcga ggtcgagcac gcggcgcacg
     5161 ccgaggtcgc cggtgatgcg ctccatgccg ccgggctgcg gttccaggtg cggcttggtc
     5221 aggtgcacga tcaggcgcag gtacttgttc ttcttcaccg cggtgtcgcc gaacatctgc
     5281 cggacgttga gcacgccgag gccgcgcact tccagcatgt cctgcagcag ttcggggctg
     5341 gtgccgtcga gcacgtcggg cgcgatctgg gtgaactcgg gcgcgtcgtc ggcgaccagg
     5401 cgatggccgc gcgtgatgag ttccagcgcg agctcgctct tgcccgagcc ggattcgccg
     5461 gtgatcagca cgccgatcga atagatctcc atgaacacgc cgtgcagcgt cacccgcggc
     5521 gcgagcttgc gcgcgaggtg gtactgcagg tggttgagca gctcatgccc gcgccgcggc
     5581 gacacccaca acggcgtgcc cgattcctcg gcggcgtcgc gcaggtcggc cgggcagccc
     5641 tggtccttgc tgatcaccag cgcgagcggg ccggagccga tgatgcgggc gatggtgtcc
     5701 cagcgctggc gggcgtcgag gtcgtcgagc caggccagtt cctcggtgcc caggatctgc
     5761 accttgttcg ggtagatggt gttgaggtag ccggcgagcg agggccggcg cgcgaccgtg
     5821 tcgaccgact cgagcacgcg cgagacgccc tgttgcccag ccgcccagcg cagcgcgagc
     5881 cgctcgcgca gctgctcgaa cagctcgccc gcgctgatcg ccaggggcgc gggcgggctc
     5941 atgcgacggg gcggaccggg ccgagcagca cgccgcacag cgcatcggca tccgcggcgc
     6001 cgcgcagggc gtcgcggaag ccggcgtcgc cgaagcgttc ggccagttcc gacagcagct
     6061 gcaggtgctg ctgggtgaaa tgcgcgggca ccgccatggc gaacaccagg tcgaccggct
     6121 ggccgtcgcc ggcgtcgaag tcgacccccg gcgcgagccg caggaaggcc gcgcgcgctt
     6181 cggcgaaggc gtcggtgcgg ccgtgcggga tggccacgcc gtggccgatc gcggtgctgc
     6241 ccaggcgttc gcgctggcgc aggctgtcgc cgatcgcgcc aacggcgccg gcggcgtcgc
     6301 cggcgagcag gcgcgcggcc gcctcgagca cgcgctcgcg gtcggccggc tcgaccagga
     6361 tcacgatccg gtcggcgctg agcagctcgg acaggggcat gcgcgcgcgg gcgtcaggcg
     6421 aaatcgccct tgcgggccgg gctttcgccg cggtggtggt cgaccacctt ttccttgtgc
     6481 ttgaccagca ggcggtcgag cttgtcggcg agcaggtcga tcgccgcgta catgtccggg
     6541 ccgctcgcat cggcgtgcgc cgctcggccg ccggccaggt tcaccgtcgc ttcggcgcag
     6601 tgctgcggct tgtccacccg cagctggacc ttgacctcga tgggcctgtg gtcgaagtgg
     6661 cgctccaggc gcgcgagctt gtcctgcacg tagtcgcgca gcgggggagt gatttcgatc
     6721 tgctggccgt aggtctcgat gcgcatctgc gtcctcctgg tgcgggtggc gacagcatcg
     6781 cgcggatgcc ggacgccacg gtgaatgcgg gctccggccg ccctgcggcg cggcggctca
     6841 gccgatgcgc acccgttcgt gcgaggacgg gatgctcatc gcttcacggt attttgccac
     6901 ggtgcggcgc gccaccggca cgccaccggc cttgagcagg gcggccaggc gggcgtccga
     6961 gaggggcttg cgcgggtttt cggcgtcgat cagcgcgcgg atcatgctct ggatcgcggt
     7021 gctggaggtc tcgccgccgc cgccggtctc gatcccgga
//
LOCUS       DATIQC010000184         3863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_12376, whole genome shotgun sequence.
ACCESSION   DATIQC010000184 DATIQC010000000
VERSION     DATIQC010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3863
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12376"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..846)
                     /gene="ttcA"
                     /locus_tag="VLM17_03865"
     CDS             complement(<1..846)
                     /gene="ttcA"
                     /locus_tag="VLM17_03865"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014645455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HSR64728.1"
                     /translation="MDLTLPLAEPLPRARKHAHEQQRLAKRLRHQVGRAIADFGMIED
                     GDKVMVCLSGGKDSYTMLDILLQLQKKAPVRFELVAVNLDQKQPDFPEHVLPEYLASV
                     GVPYTILEQDTYSVVTRVVPEGKTMCSLCSRLRRGALYAHAEAEGFTKIALGHHRDDL
                     VATFFLNLFFHAKLAGMPPKLRSDDGKHVVIRPLAYVREDDIAAYAAAQRFPIIPCNL
                     CGSQENLQRRQVKKMMDAWERESPGRLETIARALGDIRPSQLSDPTLFDFLALGTRGG
                     PLPDAH"
     gene            929..1147
                     /locus_tag="VLM17_03870"
     CDS             929..1147
                     /locus_tag="VLM17_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002803587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HSR64729.1"
                     /translation="MNQPADPAELARLALRLAELRQEHRVLDAEIARLQDAPAADELA
                     LRRMKKHKLQLKDCIARLESALIPDQPA"
     gene            complement(1272..>3863)
                     /gene="plsB"
                     /locus_tag="VLM17_03875"
     CDS             complement(1272..>3863)
                     /gene="plsB"
                     /locus_tag="VLM17_03875"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004366 - glycerol-3-phosphate
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HSR64730.1"
                     /translation="PVQDELSAAAPSGPPPPAPPPPARRPWWAGLLGRLLEPWIGLNI
                     EPQHPASLLAGRPVCYVLEDYGLSNALILERACREAGLPSPLRPLTGDPLGRKRAYVA
                     LSRRNAGSTVELAANLATGKAPPPPKRHSDSLARLLDAHRADPALDVQLVPVSIFVGR
                     APDKQSGWFAVLFSENWTLVGRFRRLLAILLNGRNTLVQFAPPVGLRDIVAEALPPER
                     TVRKLSRVLRTHFHRIREAVIGPDLSTRRLLVDKVLAAGPVKEAIADQARRDNSRPED
                     AWKKAHGYAYEIAADYSHPVVRSASFLLTSVWNRIYRGVLVHHLDRLKQAAPGHEVIY
                     VPSHRSHMDYLLLSYLLYTHGIVPPHIFAGVNLNLPVIGTLLRKGGAFFARRSFRGNA
                     LYSAVFREYMAQLVAGGYSIEYFIEGGRSRTGRLLQPKGGSLAMTVRAYLRQPTRPVL
                     FQPIYIGYEKLMEGRSYLDELTGKPKEKESILGLLLGIPKVLRSNYGQVVVNFGEPIP
                     LADMLATHAPRWDGSAVGDDEKPEWLAATVDATAQQIQVNVNRAADVNPVNLLALSLL
                     STPKHAMGEADLLAQIALSKSLLVEVPYGERVTVTPHTPEQIVAHGEEIGMLARVAHP
                     MGDVLSVDDDTAGQLSYFRNNVLHLFTASAWIASCFQHNRRMARGTLLRLGRTMYPFL
                     QAELFLPWDEDEFASRLERTMDVFVREGLLQQVNDEDGGILARQSGQTDEVFRLRAIG
                     HALQQAFERYYIAISVLAKNGPGTLGAGELESLCHLAAQRLSLLYAPAAPEFFDKALF
                     RGFIQKLRELKLVWPDQNSKLVFDERLAALAKDAKVILGRELRHTIEKISPEAARPEP
                     PASRTGD"
BASE COUNT          548 a         1306 c         1422 g          587 t
ORIGIN      
        1 gtgggcgtcg ggcagcgggc cgccgcgcgt gccgagcgcg aggaagtcga acagcgtcgg
       61 atcgctcagc tgcgacgggc ggatgtcgcc cagcgcgcgc gcgatcgtct cgaggcgacc
      121 gggcgattcg cgctcccacg cgtccatcat cttcttcacc tgcctgcgct gcaggttttc
      181 ctgcgagccg cacaggttgc acgggatgat cgggaaccgc tgcgccgcgg cgtaggcggc
      241 gatgtcgtcc tcgcgcacgt aggcgagcgg gcggatcacc acgtgcttgc cgtcgtcgct
      301 gcgcagcttc ggcggcatgc cggcgagctt ggcgtggaag aacaggttga ggaagaacgt
      361 cgccacgagg tcgtcgcggt ggtggccgag cgcgatcttg gtgaaaccct cggcctcggc
      421 gtgcgcgtac agcgcgccgc ggcgcaggcg cgagcacagt gagcacatcg tcttgccttc
      481 cggcacgacg cgggtgacga ccgaataggt gtcctgctcg aggatcgtgt acggcacgcc
      541 gaccgacgcg aggtactccg gcagcacgtg ctcggggaag tccggctgct tctggtcgag
      601 gttgaccgcg accagctcga agcgcaccgg cgccttcttc tgcagctgca gcaggatgtc
      661 gagcatggtg tagctgtcct tgccgccgga caggcacacc atcaccttgt cgccgtcctc
      721 gatcatgccg aagtcggcga tcgcgcgtcc cacctggtgg cgcaggcgct tggccagccg
      781 ctgctgctcg tgcgcgtgct tgcgcgcgcg cggcaacggt tcggcgaggg gcagcgtcag
      841 gtccatgcgg ggcgtgcggt ggtcggtcga tcattctacc gtcgccgacc gccatgacgt
      901 tgccgcaggt cgcggttacg ctcggcgcat gaaccagccc gccgaccccg ccgagctcgc
      961 gcgcctggcg ctgcgcctgg ctgaactgcg ccaggagcac cgggtgctgg atgcggagat
     1021 cgcgcgcctg caggacgcgc ccgcggcgga cgaactcgcc ctgcggcgga tgaagaagca
     1081 caagctgcag ctcaaggact gcatcgcgcg gctggagagc gcgctgatcc cggaccagcc
     1141 ggcgtgagca ggcttcgggt ttcgtagccc gggcaagcga agcgcacccg ggacacccga
     1201 agcgctccgg ggcgttcccc gggtgcgcct tcggcttgcc cggggctacg gcgtcgcaac
     1261 gccggactcg ttcagtcgcc tgtccgcgac gccggcggct ccggccgcgc ggcctccggg
     1321 ctgatcttct cgatggtgtg gcgcagttcg cggccgagga tcaccttcgc gtccttggcc
     1381 agcgcggcca gccgctcgtc gaacaccagc ttgctgttct ggtccggcca gacgagcttc
     1441 agttcgcgca gtttctggat gaagccgcgg aacagtgcct tgtcgaagaa ctccggcgcg
     1501 gccggcgcgt acagcagcga caggcgctgc gcggcgaggt ggcacaggct ctcgagctcg
     1561 ccggccccca gcgtgcccgg gccgttcttg gccagcaccg agatcgcgat gtagtagcgc
     1621 tcgaaggcct gctgcagcgc atggccgatc gcgcgcaggc ggaacacctc gtcggtctgc
     1681 ccggactggc gcgcgaggat gccgccgtcc tcgtcgttca cctgctgcag caggccctcg
     1741 cgcacgaaca cgtccatcgt gcgctcaagc cgcgaggcga actcgtcctc gtcccacggc
     1801 aggaacagtt ccgcctgcag gaagggatac atggtgcggc ccaggcgcag cagcgtgccg
     1861 cgcgccatcc gccggttgtg ctggaagcag ctggcgatcc acgccgaggc ggtgaacagg
     1921 tgcagcacgt tgttgcggaa gtagctgagc tggccggcgg tgtcgtcgtc gacgctgagc
     1981 acgtcaccca tcgggtgggc gacgcgcgcg agcatgccga tctcctcgcc gtgggccacg
     2041 atctgctccg gcgtgtgcgg ggtgacggtg acgcgttcgc cgtacggcac ctcgaccagc
     2101 agcgatttcg acagcgcgat ctgcgccagc aggtcggcct cgcccatcgc gtgcttgggc
     2161 gtggacagca gcgacagcgc gagcaggttg accgggttga cgtcggcggc gcggttgacg
     2221 ttgacctgga tctgctgcgc ggtggcgtcc accgtcgccg ccagccattc cggcttctcg
     2281 tcgtcgccga ccgccgagcc gtcccaccgc ggcgcatgcg tcgcgagcat gtcggcgagc
     2341 gggatgggct cgccgaagtt gaccacgacc tgtccgtagt tgctgcgcag caccttgggg
     2401 atgccgagca gcaggccgag gatggattcc ttctccttcg gcttgccggt gagctcgtcc
     2461 aggtagctgc ggccctccat cagcttttcg tagccgatgt agatcggctg gaacagcacc
     2521 gggcgcgtgg gctgacgcag gtaggcgcgc accgtcatcg ccagcgaccc gcccttgggc
     2581 tgcagcaggc gcccggtgcg cgagcgcccg ccctcgatga agtactcgat cgaatagccg
     2641 ccggcgacca gctgcgccat gtattcgcgg aacaccgccg agtacagcgc gttgccgcgg
     2701 aagctgcggc gggcgaagaa cgcgccgccc ttgcgcagga gggtgccgat caccggcagg
     2761 ttgaggttga cgccggcgaa gatgtgcggc ggcacgatgc cgtgggtgta gagcaggtag
     2821 ctcagcagca ggtagtccat gtggctgcgg tggctgggca cgtagatcac ctcgtgcccg
     2881 ggcgcggcct gcttgaggcg gtccaggtgg tgcaccagca cgccgcggta gatgcggttc
     2941 cacacgctgg tgagcaggaa cgaggccgaa cgcaccaccg ggtgcgagta gtcggcggcg
     3001 atctcgtagg cgtagccgtg cgccttcttc cacgcgtcct cgggcctgct gttgtcgcgc
     3061 cgcgcctggt cggcgatggc ctccttcacc ggcccggcgg cgagcacctt gtccaccagc
     3121 aggcgccggg tcgacaggtc cggcccgatc accgcctcgc ggatgcggtg gaagtgcgtg
     3181 cgcagcaccc gcgagagctt gcgcaccgtg cgctcgggcg gcagggcctc ggcgacgatg
     3241 tcgcgcagcc ccaccggcgg cgcgaactgc accagcgtgt tgcggccgtt gagcaggatc
     3301 gcgagcagcc gccggaagcg gccgaccagc gtccagttct ccgagaacag caccgcgaac
     3361 cagccgctct gcttgtccgg cgcgcggccg acgaagatcg ataccggcac cagctgcacg
     3421 tcgagcgcgg ggtcggcgcg gtgcgcgtcg agcaggcgcg ccagcgagtc cgaatgccgc
     3481 ttcggcggcg gtggcgcctt gccggtggcg aggttggcgg cgagttcgac cgtgctgccg
     3541 gcattgcgcc gcgagagcgc gacgtaggcg cgcttgcggc cgagcggatc gccggtcagc
     3601 ggacgcaatg gcgagggcag gccggcttcg cggcaggcgc gctcgaggat cagcgcgttg
     3661 gacaggccgt agtcctcgag cacgtagcag accgggcgcc cggcgagcag cgacgccggg
     3721 tgctgcggtt cgatgttcag cccgatccac ggctccagca gcctgccgag caggccggcc
     3781 caccacggcc ggcgcgcggg tggcggcggc gcgggcggcg gcggccccga gggcgctgcg
     3841 gcggacagct cgtcctgcac ggg
//
LOCUS       DATIQC010000185         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_471838, whole genome shotgun sequence.
ACCESSION   DATIQC010000185 DATIQC010000000
VERSION     DATIQC010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471838"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..785)
                     /locus_tag="VLM17_03880"
     CDS             complement(<1..785)
                     /locus_tag="VLM17_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR64731.1"
                     /translation="MRLLPPLLACVLSLAATATAAEAPHPVLLQPDRVWTGDGDAAHA
                     GWLVLVRNGTIEAVGDPAAVHAPADARRVVLPGTTLAPGLIDLHSHLFLHPYNETPWN
                     DQVLKEPEPYRTLEAAQHARDTLLAGFTTLRDLGTEGAGFADVSVKHAIEDGLIPGPR
                     LFVATRAIVATASYGPGPRGFRPDLDLPGGAQDVSGADEAIRAVREQAGRGADWIKVY
                     TDYRIGTDGSTEPTFTAGELHALVEAAHASGRPVSAHAQGDTG"
     gene            complement(906..1394)
                     /locus_tag="VLM17_03885"
     CDS             complement(906..1394)
                     /locus_tag="VLM17_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64732.1"
                     /translation="MTDPFLIRPIEARDDTAVAHVIRTVMPEFGATGCGFAINDPEVD
                     WMHRAYAAPRSAYFVVERDGLVQGGGGVAPLEGGDPDLCELRKMYFLPSLRGLGAGAA
                     VMARCLEAARGFGFRRCYLETLTGMDAAMKLYERSGFRRIDGPLGSTGHGGCNTFYLL
                     DL"
     gene            complement(1404..>2328)
                     /locus_tag="VLM17_03890"
     CDS             complement(1404..>2328)
                     /locus_tag="VLM17_03890"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071111 - cyclic-guanylate-specific
                     phosphodiesterase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GGDEF domain-containing phosphodiesterase"
                     /protein_id="HSR64733.1"
                     /translation="TARLGIARAPADGDRPQALIQNADAAMYDAKRRSRNGWQAFTPA
                     LALSQQERLRMETQLRRAADNNEFHLVYQPQVDLRRGGIVGAEALIRWNSQQLGEMRP
                     DHFIGHAETTGDIVRIGGWVLREACRQICAWRDAGLGIVRIAVNVSYRQFLGDDLADV
                     VQRVLDEFVLPGSALELEFTERVLIEDAPDTLRTFARLREMGVVLTIDDFGEGYSALN
                     YLRRLPIHGLKLSQHFLQGVPGNKSDVAVCQAVSGIARSLGLGLVAEGIESEAQRRFL
                     LDLGVPVGQGFLFAPGLAADDFALRLERTHL"
BASE COUNT          324 a          775 c          892 g          337 t
ORIGIN      
        1 atgccggtgt cgccctgcgc gtgggccgac accggccggc cggaggcgtg cgccgcctcg
       61 acaagcgcat gcagctcgcc ggcggtgaag gtcggctcgg tgcttccgtc cgtgccgatg
      121 cggtagtcgg tgtagacctt gatccagtcg gcgccgcgac cggcctgctc gcgcaccgcg
      181 cggatcgcct cgtcggcgcc gctgacatcc tgcgcgccgc cgggcaggtc caggtcgggg
      241 cggaagccgc gcgggccggg accgtagctc gcggtggcga cgatcgcacg ggtggcgacg
      301 aacaggcgcg ggccggggat caagccatcc tcgatcgcgt gcttgaccga cacatcggcg
      361 aaccccgcgc cctcggtgcc gaggtcgcgc agcgtggtga agccggcgag cagcgtgtcg
      421 cgcgcgtgct gcgcggcctc gagcgtgcgg tagggctcgg gctccttcag cacctggtcg
      481 ttccacggcg tttcgttgta cggatgcagg aacaggtgcg agtgcaggtc gatcagcccc
      541 ggcgccaggg tcgtgccggg caggacgacg cgtcgcgcgt cggcgggtgc gtgcaccgcc
      601 gccgggtcgc cgacggcttc gatcgtcccg ttgcgcacca gcaccagcca gccggcgtgg
      661 gcggcgtcac cgtcgccggt ccacacgcgg tcgggctgca gcaggaccgg gtgcggcgcc
      721 tcggcggccg tggccgttgc ggcgagcgac aggacgcagg cgagcagggg cgggagaaga
      781 cgcatagggg tccagtaggt tacttgccgg ggctctggaa ccgttcgtgg tgagcttgtc
      841 gaaccatgaa cggcttctgg tttgcccttc gacaggctcg gggcgaacgg gtttcttgca
      901 tcgcatcaaa gatcgagcag gtagaacgta ttgcacccgc catgcccggt gctgccgagc
      961 gggccatcga tccggcggaa gccgctgcgc tcgtagagct tcatcgccgc gtccatgccg
     1021 gtgagggtct cgaggtagca gcggcggaag ccgaagccgc gcgcggcttc gaggcagcgc
     1081 gccatcacgg cggcgcccgc gcccaggccg cgcagcgacg gcaggaaata catcttgcgc
     1141 agctcgcaga ggtccgggtc gccgccttcc agcggcgcga cgccgccgcc gccctgcacc
     1201 aggccgtcgc gctcgaccac gaagtaggcg ctgcgcggcg cggcataggc gcgatgcatc
     1261 cagtcgacct cgggatcgtt gattgcgaag ccgcagccgg tcgcgccgaa ctcgggcatc
     1321 acggtgcgga tgacatgggc gacggccgtg tcgtcgcggg cttcgatcgg gcggatgagg
     1381 aaggggtcgg tcatgcgggg gagtcagagg tgggtgcgtt cgaggcgcag ggcgaagtcg
     1441 tcggcggcca gcccgggcgc gaacaggaat ccctggccga ccggcacccc gaggtcgagc
     1501 aggaagcgcc gctgcgcctc cgactcgatg ccttcggcga ccaggccgag gccgaggctg
     1561 cgcgcgatgc cggacacggc ctggcacacc gcgacgtcgg acttgttgcc gggtacgccc
     1621 tgcaggaagt gctggctgag cttgagcccg tggatcggca gccggcgcag gtagttgagc
     1681 gcgctgtagc cttcgccgaa gtcgtcgatg gtcaggacca cgcccatctc gcgcaggcgg
     1741 gcgaaggtac gcagggtgtc gggcgcgtcc tcgatcagca cgcgctcggt gaattccagt
     1801 tcgagcgcgc tgcccggcag gacgaactcg tcgagcaccc gctggacgac atcggcgagg
     1861 tcgtcgccga ggaactgccg gtacgagacg ttcaccgcga tgcgcacgat gccgagcccg
     1921 gcgtcgcgcc atgcgcagat ctgccggcag gcctcgcgca gcacccagcc gccgatgcgc
     1981 acgatgtcgc cggtggtttc ggcatggccg atgaaatggt cggggcgcat ctcgccgagc
     2041 tgctggctgt tccagcggat cagcgcctcg gcgccgacga tgccgccgcg gcgcaggtcc
     2101 acctgcggct ggtagacgag gtggaactcg ttgttgtcgg ccgcgcggcg cagctgcgtc
     2161 tccatgcgca ggcgctcctg ctgcgagagc gcgagcgccg gcgtgaacgc ctgccagccg
     2221 ttgcggctgc ggcgcttggc gtcgtacatc gcggcgtcgg cgttctggat cagcgcctgc
     2281 gggcgatcgc cgtccgcggg cgcgcgcgcg atgccgaggc gggcggtg
//
LOCUS       DATIQC010000186         2709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_471891, whole genome shotgun sequence.
ACCESSION   DATIQC010000186 DATIQC010000000
VERSION     DATIQC010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471891"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..845
                     /gene="nth"
                     /locus_tag="VLM17_03895"
     CDS             84..845
                     /gene="nth"
                     /locus_tag="VLM17_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HSR64734.1"
                     /translation="MTRARPSLLSPEAVRELFARLRELNPKPATELEYRTPFELLVAV
                     ILSAQATDVGVNKATRRLFPVADTPEAMLALGEDGLKRHISTIGLYNAKAANVIAMCR
                     LLLERHGGEVPRTREALEALPGVGRKTANVVLNTAFGEATIAVDTHIFRVSNRTGLAP
                     GKTVREVEDKLVQVVPREFLLDAHHWLILHGRYTCKARVPACPRCPIRDLCRYPAKTP
                     DEAQATNENGGPEPAVPRRRARVSTSLRPTRRTRG"
     gene            complement(805..2028)
                     /locus_tag="VLM17_03900"
     CDS             complement(805..2028)
                     /locus_tag="VLM17_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSR64735.1"
                     /translation="MRSSLLASAILASLGLASTAATPAYAAAAPQQVSAQDLADLKAQ
                     IAALQQRVDELQAQSDAQSEVNVNTAKALEDSQKSQAKVDKLAKVVNDTTLSGKMFFD
                     LTNVSQENNGVKTSASGTGFDVKRFYLGVNHVFNDVWSANLTTDFQYNSSLDSAADVF
                     VKKAYIQGKFSDAFVARAGSADMPWIPYAEDQYGFRYVENELVDRLKFGNSADWGLHA
                     GGVLGGGMANYAVSVVNGAGYKNPSRSKSMDVEGRVAFTPVDGLVVAAGGYSGKLGKD
                     TETTGALHTATRADVMVAYTAKAFRVGGEYFRASNWNNVLSAASDSARGYSVWGSAGL
                     GGTGMTAFARYDRADLSRDLDPALQDTYYNVGLEYAVNKNFRLAGVYKRDKRDDNAAI
                     DLVTREFGVWGEVKY"
     gene            2262..>2709
                     /locus_tag="VLM17_03905"
     CDS             2262..>2709
                     /locus_tag="VLM17_03905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HSR64736.1"
                     /translation="MRFTVALAASLLPFVASATDVTGAGSSFVYPVLSKWSSAYSTQS
                     GNRINYQSIGSGGGIAQIKAATVDFGASDKPLSAAELKQFNLGQFPVVIGGIVPVVNV
                     PGVQPGAMKLDGATLARIFLGEVTMWNDPAIAALNGGLALPALKITV"
BASE COUNT          413 a          945 c          913 g          438 t
ORIGIN      
        1 gaaggcaccc cggcgacgcc cgggctgccg cccgccgccg cggccgccct cgcccgcgcc
       61 agggcacgcg ccgcgcgcaa gccatgacgc gcgcgcgccc ctcgctgctg tcgccggaag
      121 cggtccggga gctgttcgcg cgcctgcgcg aactcaaccc gaagcccgcc accgagctgg
      181 aataccgcac gcccttcgaa ctgctggtcg cggtgatcct gtccgcgcag gccaccgacg
      241 tcggcgtgaa caaggccacg cgccggttgt tcccggtcgc cgatacgccg gaggcgatgc
      301 tcgcgctcgg cgaggacggg ttgaagcgcc acatctcgac gatcggcctc tacaacgcca
      361 aggcggcgaa cgtgatcgcg atgtgccgcc tgctgctcga gcgccatggc ggcgaggtgc
      421 cacgcacgcg cgaagcgctg gaggcgttgc ccggcgtcgg ccgcaagacc gccaacgtgg
      481 tcctcaacac cgcgttcggc gaggccacca tcgccgtgga cacccacatc ttccgggtgt
      541 cgaaccgcac cggcctggca ccgggcaaga ccgtgcggga agtggaagac aagctcgtgc
      601 aggtcgtacc gcgggaattc ctgctcgacg cgcaccactg gctgatcctg cacggccgct
      661 acacctgcaa ggcgcgcgta ccggcctgtc cgcgctgccc gatccgcgac ctgtgccgct
      721 atcccgccaa gaccccggac gaggcccagg ccacgaacga aaacggcggg ccggagcccg
      781 ccgttccgcg acgccgcgcg cgcgtcagta cttcacttcg ccccacacgc cgaactcgcg
      841 ggtgacgagg tcgatcgcgg cgttgtcgtc gcgcttgtcc cgcttgtaca cgccggcgag
      901 gcggaagttc ttgttgaccg cgtactccag gccgacgttg tagtaggtgt cctggagggc
      961 cgggtcgagg tcgcggctca ggtcggcgcg gtcgtagcgc gcgaacgcgg tcatgccggt
     1021 gccgccgagg ccggcgctgc cccacaccga gtagccgcgg gccgaatcgg aggccgcgct
     1081 gagcacgttg ttccagttgc tggcgcggaa atactcgccg ccgacacgga acgccttcgc
     1141 ggtgtaggcc accatcacgt cggcgcgggt ggcggtgtgc aacgcccctg tggtctcggt
     1201 gtccttgccg agcttgccgg agtagccgcc tgcggcaacc accaggccat cgaccggcgt
     1261 gaacgcgacc cggccttcga cgtccatcga cttgctgcgc gaaggattct tgtagccagc
     1321 gccgttgacc accgacaccg cgtagttggc catgccgccg ccgagcacgc cgccggcatg
     1381 caggccccag tcggcggagt tgccgaactt caggcggtcg accagctcgt tctcgacgta
     1441 gcggaagcca tactggtcct ccgcgtacgg gatccacggc atgtcggccg aaccggcgcg
     1501 ggccacgaag gcgtcgctga acttgccctg gatgtacgcc ttcttgacga acacatctgc
     1561 ggcgctgtcc agcgaggagt tgtactggaa gtcggtggtg aggttggccg accacacgtc
     1621 gttgaagacg tggttgacgc cgaggtagaa gcgcttgacg tcgaagccgg tgccactggc
     1681 ggacgtcttc actccattgt tttcctgcga gacgttggtg aggtcgaaga acatcttgcc
     1741 gctgagggtg gtgtcgttga ccaccttcgc cagcttgtcg accttggcct gcgacttctg
     1801 gctgtcctcg agcgccttcg cggtgttgac gttcacctcg gactgcgcgt cgctctgcgc
     1861 ctgcagttca tcgacgcgct gctgcagcgc ggcgatctgc gccttgaggt cggcgaggtc
     1921 ctgggcgctc acctgctgcg gggcggcggc agcatatgcg ggagtagccg ccgtggaagc
     1981 caggccgagg ctggcgagga tggccgaagc gagaaggctg gaacgcatgg cgcggattct
     2041 cctgggaggt tggaaacacg ggcggccggg gcggccgcgg cggggttaag aatccgtcaa
     2101 gaatgtgacg tttttgcgtc agcgaccgcc cggttgaacg cagcaaggcc ctgtcatcgg
     2161 cccgcaacaa atccgacccg gcgctgtaac ccggcattcg ttcaatggcc gccgaccgct
     2221 cccctggtcc ccttctccag gagttacccg tggcttccaa gatccgcttc accgtggcgc
     2281 tcgccgcgtc gctgcttccg ttcgtcgcca gcgcgacgga cgtcaccggc gcgggctcga
     2341 gcttcgtcta tcccgtcctc tccaagtggt cctccgccta cagcacgcag tcgggcaacc
     2401 gcatcaacta ccagtcgatc ggctcgggcg gcggcatcgc gcagatcaag gcggcgacgg
     2461 tggatttcgg cgcctccgac aagccgctct ccgcggccga gctgaagcag ttcaacctcg
     2521 ggcagttccc ggtggtgatc ggcggcatcg tcccggtcgt gaacgtgccg ggcgtgcagc
     2581 cgggcgcgat gaagctcgac ggcgccaccc tcgcccgcat cttcctcggc gaggtcacca
     2641 tgtggaacga cccggcgatc gccgcgctca acggcggcct ggcgctgccg gccctgaaga
     2701 tcaccgtcg
//
LOCUS       DATIQC010000187         4815 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_365655, whole genome shotgun sequence.
ACCESSION   DATIQC010000187 DATIQC010000000
VERSION     DATIQC010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4815
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365655"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2113)
                     /locus_tag="VLM17_03910"
     CDS             complement(<1..2113)
                     /locus_tag="VLM17_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017158309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA
                     hydratase family protein"
                     /protein_id="HSR64737.1"
                     /translation="MSQKLLVRRAAVLGAGVMGAQIAAHLVNAGVDTVLFDLPAKDGS
                     GPGEGRNGIVMKAIANLAKLSPAPLADKALAERIVPANYDTGLELLRDCDLIIEAIAE
                     RMDWKQDLYRKIAPFVPAHAVLASNTSGLGINALADVLPEELRHRFCGVHFFNPPRYM
                     HLAELIPAKTTDQAVLDGLEAFLTTTLGKGVVIARDTPNFIGNRVGVFSMLAAMHHTQ
                     QFALGFDTVDALTGPAIGRPKSATYRTADVVGLDTMVHVIDTMRDTLPDDPWHRYFQA
                     PKWLQGLVDKGALGQKTGAGFYTRRGKDILVLDLKAQDYRPSAGEVDPIVGGLLKEKD
                     PARKFAALRASEHPQAQFLWAIFRDTFHYSAFHLKDIADTARDVDFAMRWGYGWSAGP
                     FETWQAAGWKQVAEWIAEDIVAGKAMSNAPLPDWVFDGREEVHGGVGSWSPARNKAVA
                     RSENPVYARQRFPDALLGEKSSQGRTVYENDGVRMWADDDDIAIVGFKTKMQTVNDQV
                     LDGLQEAIGIAERDFGGLVIWQPKEPFSAGADLAGALGLLQAGDLAGFEAMVADFQAT
                     SQRIKYSLVPVVAAVRGLALGGGCEFQMHAARTVFALESYVGLVEAGVGLLPAGGGLK
                     ELAVRASDAAGPGGDVFAHLKTAFETVAMAKVSTSAPEAKALRLAREADPVVFNPFEL
                     LHVARAQARALAEGGYRPPLPA"
     gene            complement(2132..2752)
                     /locus_tag="VLM17_03915"
     CDS             complement(2132..2752)
                     /locus_tag="VLM17_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015463154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HSR64738.1"
                     /translation="MTATAHFSTKDRILGAAEELFAQFGFAGTSLRQVTSRADVNIAA
                     VNYHFGSKENLVNEVFRRRMDEMSAQRLAALKAAVSAHPGELEPILAAFVEPALAMAQ
                     DRHGGGAFIRVIARAYAEKNDSLRKFLSDQYGHVPREFAKAIAACMPALSKEELYWRL
                     DFLSGALTYAMADFGLIKRPAGVGEATHRARAARELIRFAAAGFKS"
     gene            2965..3390
                     /gene="ndk"
                     /locus_tag="VLM17_03920"
     CDS             2965..3390
                     /gene="ndk"
                     /locus_tag="VLM17_03920"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005409295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HSR64739.1"
                     /translation="MALERTLSIVKPDAVAKNVIGEIYSRFEKAGLKVVAAKMTQLSK
                     QEAEGFYAVHRERPFFNALVNFMISGPVMIQVLEGENAVLKNRDLMGATNPKDAAAGT
                     IRADFADSIDANAVHGSDSLENAAIEVAYFFPATDVYAR"
     gene            3499..4638
                     /gene="rlmN"
                     /locus_tag="VLM17_03925"
     CDS             3499..4638
                     /gene="rlmN"
                     /locus_tag="VLM17_03925"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HSR64740.1"
                     /translation="MAKTNLFDLDRAGLERFFEQELGEKKFRAHQVMKWIHHRYVTDF
                     VDMTDLGKALRAKLEQRAEVRVPQLVFDKESTDGTHKWLLGMDPKNAIETVYIPDKGR
                     GTLCVSSQVGCALNCTFCSTATQGFNRNLSTAEIIGQVWIAARHLGNVPHQQRRLTNV
                     VMMGMGEPLANFDNVVRAMSIMRDDLGYGLANKRVTLSTAGMVPMIDRLAVESDVSLA
                     VSLHAPNDALRSELVPLNRKYPVAELMDACVRYALRKKGESVTFEYTLMKGVNDQPEH
                     ARQLVKLMREFDRRVQMKDAAKVNLIPFNPFPGTRFERPEDEVIRGFQKQLNAAGMIA
                     PVRRTRGDDIDAACGQLKGQVMDRTRRQAEFRKRLDAQGPAGAAA"
     gene            4625..>4815
                     /locus_tag="VLM17_03930"
     CDS             4625..>4815
                     /locus_tag="VLM17_03930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HSR64741.1"
                     /translation="MPPRNGVLLLALAALVVAGCSRLTFIKPKMDRGKFTRVAPEYDV
                     REDRRDRQRIAAMDAQALA"
BASE COUNT          774 a         1642 c         1644 g          755 t
ORIGIN      
        1 gggcgggcag gggcgggcgg tagccacctt cggccagcgc gcgcgcctgc gccctcgcga
       61 cgtgcagcag ttcgaacggg ttgaacacca ccggatcggc ttcgcgcgcc agcctgagcg
      121 ccttcgcttc cggcgcggac gtggagacct tcgccatcgc cacggtctcg aacgccgtct
      181 tgaggtgcgc gaacacgtcg ccgcccgggc cggccgcgtc cgacgcgcgc accgccagtt
      241 ccttcaggcc gccgccggcc ggcagcaggc ccacgcccgc ttcgaccagg ccgacgtagc
      301 tctcgagcgc gaacaccgtg cgcgcggcgt gcatctggaa ctcgcagccg cctccgagcg
      361 ccagcccgcg caccgcggcg acgaccggta ccagcgaata cttgatgcgc tggctggtcg
      421 cctggaagtc ggcgaccatc gcctcgaagc cggcgaggtc gccggcctgc agcaggccga
      481 gcgcaccggc gaggtccgcg ccggcggaga aaggctcttt cggctgccag atgacgagac
      541 cgccgaagtc gcgctcggcg atgccgatcg cctcctgcag gccatccagc acctggtcgt
      601 tgaccgtctg catcttggtc ttgaagccga cgatggcgat gtcgtcgtcg tccgcccaca
      661 tccgcacgcc gtcgttctcg tacacggtgc ggccctggga ggacttttcg ccgagcagcg
      721 cgtcgggaaa gcgctggcgc gcgtacaccg ggttctccga gcgcgccacg gccttgttgc
      781 gcgccgggct ccagctgccg acgcccccat gcacttcctc gcgtccgtcg aacacccagt
      841 caggcagcgg cgcgttgctc atcgccttgc cggcgacgat gtcctcggcg atccactcgg
      901 ccacctgctt ccagccggcc gcctgccacg tttcgaacgg acccgccgac cagccgtatc
      961 cccagcgcat cgcgaagtcg acgtcgcggg cggtgtcggc gatgtccttc aggtggaagg
     1021 cgctgtaatg gaaggtgtcg cggaagatcg cccacaggaa ctgcgcctgc gggtgctcgc
     1081 tggcgcgcag tgcggcgaac ttcctggccg gatccttctc cttgagcagg ccgccgacga
     1141 tcgggtcgac ctcacccgcg ctcggacggt agtcctgcgc cttgaggtcg agcacgagga
     1201 tgtccttgcc gcgcctggtg tagaagccgg cgccggtctt ctggcccagc gcgcccttgt
     1261 cgaccagccc ctgcagccac ttcggcgcct ggaaatatcg gtgccacgga tcgtcgggca
     1321 gcgtgtcgcg catggtgtcg atgacatgca ccatggtgtc gaggccgacc acgtccgcgg
     1381 tgcggtaggt cgccgacttc ggccggccga tcgcgggacc cgtcagcgcg tcgacggtgt
     1441 cgaagccgag cgcgaactgc tgcgtgtggt gcatcgccgc gagcatcgag aacacgccga
     1501 cgcggttgcc gatgaagttg ggcgtgtcgc gggcgatcac cacgcccttg ccgagtgtcg
     1561 tggtgaggaa ggcttcgagg ccgtcgagca cggcctggtc ggtcgtcttc gccggaatca
     1621 gttcggcgag gtgcatgtag cgcggcgggt tgaagaaatg cacgccgcag aaccggtggc
     1681 gcagttcttc cggcaggaca tcggccagcg cgttgatgcc gaggccggag gtgttgctgg
     1741 ccagcaccgc gtgcgccggc acgaagggcg cgatcttccg gtacaggtcc tgcttccagt
     1801 ccatccgctc ggcgatcgcc tcgatgatga ggtcacagtc acgcaggagt tccaggcccg
     1861 tgtcgtaatt ggccggcacg atgcgctcgg ccagcgcctt gtcggcgagc ggggcggggc
     1921 tcagcttcgc caggttggcg atcgccttca tcacgatgcc gttccggccc tcgccagggc
     1981 cgctcccgtc cttggccggc aggtcgaaca gcaccgtgtc gacgccggcg ttgaccaggt
     2041 gggcggcgat ctgcgcaccc atgaccccgg cgccgagaac ggcggcacgc cgcacaagca
     2101 gtttctgaga catgtcggat aaatccttga tctaggactt gaaaccggcc gctgcgaagc
     2161 ggatgagttc acgcgccgcg cgggcgcggt gggtggcctc gccgaccccg gcggggcgct
     2221 tgatcaggcc gaagtcggcc atcgcgtacg tgagcgcgcc ggacaggaag tccagccgcc
     2281 agtacagctc ctccttgctc aatgccggca tgcacgcggc gatggccttg gcgaactcgc
     2341 gcggcacgtg gccgtactgg tcggacagga acttgcgcag gctgtcgttc ttctcggcgt
     2401 aggcgcgggc gatcacccgg atgaaggcgc cgccgccgtg gcggtcctgg gccatggcca
     2461 gggccggctc gacgaaggcg gcgagaatgg gctcgagttc gccggggtgc gccgaaacgg
     2521 ccgctttcag cgcggcgagg cgctgcgcgc tcatctcgtc catgcgccgc cggaacacct
     2581 cgttgacgag gttctccttg ctgccgaagt ggtagttgac cgcggcgatg ttcacgtccg
     2641 cgcggctggt gacctgccgc agcgaggtgc cggcgaagcc gaactgggcg aacagctcct
     2701 cggcggcgcc gaggatgcgg tccttggtgg agaagtgggc ggtggcggtc atcggcagct
     2761 cctgaatcaa acgcttgttt gatgctagcc cccggggtga acgccgtcaa tcgaacgggg
     2821 ccggaaagcg tggcaatggc atgcccgctt ccgctagaat taccgtagcc atatcggcta
     2881 aacccgcgtc cgcacgcggg tttttctgtt atcctcgggc cgggggcgat gagcccgcga
     2941 cccgcctgac cggagaaatt ccccatggcg ctggagcgca ccctgtcgat cgtcaagccc
     3001 gatgccgtcg ccaagaacgt catcggcgag atctattcgc gtttcgaaaa ggccggcctg
     3061 aaggtcgtgg ccgcgaagat gacgcagctg tccaagcagg aagccgaagg cttctacgcc
     3121 gtgcatcgcg agcgtccgtt cttcaacgcg ctggtcaact tcatgatctc gggcccggtg
     3181 atgatccagg tgctcgaagg cgagaacgcg gtgctgaaga accgcgacct gatgggcgcc
     3241 accaacccga aggacgccgc ggcgggcacg atccgcgcgg acttcgccga ctcgatcgac
     3301 gccaacgccg tgcacggctc cgactcgctg gagaacgcag cgatcgaagt cgcgtacttc
     3361 ttcccggcga ccgacgtcta cgcccgctga tccgttttgg ttgacgacgc aatgaccgac
     3421 acgcgcgcca tcgccatcga actcgccccg gcgcaggccg agggcggggc gcgcgcgtcc
     3481 gttgcaggcg cgccggtcct ggcgaagacc aacctcttcg acctcgaccg cgcgggcctg
     3541 gaacgcttct tcgagcagga gctcggcgag aagaagttcc gcgcccacca ggtgatgaag
     3601 tggatccacc accgctacgt caccgacttc gttgacatga ccgacctggg caaggcgctg
     3661 cgcgccaagc tcgagcagcg cgccgaagtt cgggtgccgc agctggtctt cgacaaggaa
     3721 tccaccgacg gcacccacaa gtggctgctc ggcatggacc cgaagaacgc gatcgagacg
     3781 gtctacatcc ccgacaaggg tcgcggcacg ctgtgcgtgt cctcgcaggt gggctgcgcg
     3841 ctcaactgca ccttctgctc gaccgcgacc cagggcttca accgcaacct gtcgaccgcc
     3901 gagatcatcg gccaggtctg gatcgccgcg cgccacctgg gcaacgtgcc gcaccagcag
     3961 cgcaggctca ccaacgtggt gatgatgggg atgggcgagc cgctggcgaa cttcgacaac
     4021 gtcgtgcgcg cgatgagcat catgcgcgac gacctaggct acggcctcgc caacaagcgc
     4081 gtgacgctct cgaccgccgg catggtgccg atgatcgacc ggctcgccgt cgagagcgac
     4141 gtgtcgctgg cggtgtcgct gcatgcgccg aacgacgccc tgcgcagcga gctcgtgccg
     4201 ctcaacagga agtacccggt cgccgagctg atggacgcct gcgtgcgcta tgcgctgcgc
     4261 aagaagggcg agtcggtgac cttcgagtac acgctcatga agggcgtgaa cgaccagccc
     4321 gagcacgcgc gccagctggt gaagctgatg cgcgagttcg atcgccgcgt gcagatgaag
     4381 gacgcggcca aggtcaacct gattccgttc aacccgttcc cgggcacccg cttcgagcgt
     4441 cccgaggacg aggtgatccg cggcttccag aagcagctca acgccgcggg catgatcgcg
     4501 cccgtgcgcc gcacgcgcgg cgacgacatc gatgccgcct gcggccagct caagggccag
     4561 gtgatggatc gcacccgtcg ccaggccgaa ttccgcaagc gcctggatgc gcagggaccg
     4621 gccggtgccg ccgcgtaacg gcgtcctgct gctggcgctc gcggcgctgg tcgtcgcggg
     4681 ctgctcgcgc ctgacgttca tcaagccgaa gatggaccgg ggcaagttca cccgcgtcgc
     4741 gcccgaatac gacgtccgcg aggacaggcg cgatcgccag cgcatcgccg ccatggacgc
     4801 gcaggcgctg gcgga
//
LOCUS       DATIQC010000188         4482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_83265, whole genome shotgun sequence.
ACCESSION   DATIQC010000188 DATIQC010000000
VERSION     DATIQC010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4482
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83265"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1220)
                     /locus_tag="VLM17_03935"
     CDS             complement(<1..1220)
                     /locus_tag="VLM17_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 7-halogenase"
                     /protein_id="HSR64742.1"
                     /translation="MTGAASDARDVVILGGGLAGLSLAIQLRQRDPALAVTVLERRAH
                     PVPEAAFKVGESTVEIGAHYFAEVLGLEAHLQREHVRKFGFRFFFSDGQQAIERCTEL
                     GVSQLLPTPSWQLDRGRFENFLGAHARSLGVEFRDGAVVRAIELGDGEEAHRIGFEHE
                     GATHALGARWLVDASGRAGLLRRKLDLAEANDHDVNAVWWRVDGIVDPHAWTQDADWL
                     ARCTPPDRWRSTNHLCGPGYWVWLIPLSSGAHSIGIVADGALHPLGTLDTHAKAMAWL
                     RVHQPALAAALDQPRHRLRDFLFLRHFSHGCKQVFSARRWALTGEAGLFLDPFYSPGS
                     DFIAISNGYIADLVARDRDGRPFAAHAEIYQQLYRSFYDNTMTLYQDQYALFGDALVM
                     PVKIIWDYTFYWALL"
     gene            complement(1217..2062)
                     /locus_tag="VLM17_03940"
     CDS             complement(1217..2062)
                     /locus_tag="VLM17_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008571170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR64743.1"
                     /translation="MAETPALPVRLDRHTVAIVIPALNEALRIREVVEGALAQCDTVV
                     VVDDGSDDDTVDRIADLPVTLLRHPRRMGKGASLRDGFRAALKLGAAAVVTMDGDGQH
                     AAEDVPRLLEAGNRHPGAIVIGARLRKRVNQPLYRRLANEFGDWGIGWACGLRIADSQ
                     SGQRLYPGAVAALDDVPGEDFVYEAQILISAVRRVGAGIVSVPIESRYAQVHDDEAPK
                     FRASHFRPLRDLWRITSHVVRQVIQHGDVLREYLHTRATPPVIDDPTGEFGTVFAESD
                     MQRAG"
     gene            complement(2055..2852)
                     /locus_tag="VLM17_03945"
     CDS             complement(2055..2852)
                     /locus_tag="VLM17_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
                     /protein_id="HSR64744.1"
                     /translation="MIPGKNTLNATLEGVGFWCNGLPSWADAQAFVRDGTRPDDAPAR
                     PSPQLLAPNERRRAPESVAVALEVAFAACQAAGRDPATLPSVFASTHGDLSITDYICS
                     TLASDPASVSPTRFHNSVHNAAAGYWTIGTGCTEPATALSAYDASFAQGLVEAMAQLH
                     AGAPAVLLVAYDTAAPGPFAPISNSSGLLGAALVLSSPSHAGAPRLRTTLVDADAPPP
                     QGPLAGLAGGNAMAPMLPLFQALASGHDLLSLHAGPRRALRVEIAYG"
     gene            complement(2863..4035)
                     /locus_tag="VLM17_03950"
     CDS             complement(2863..4035)
                     /locus_tag="VLM17_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HSR64745.1"
                     /translation="MPPLAIRAFTATTALGRGLAAQADALRARRSGLRRNDFGDAGLA
                     TWIGRVDGLEDAPLPARLARWECRNNRLAWLALQQDDLQAALRSALSRHGPDRVALVV
                     GTSTSSIGATEEAYARLEDGAFPPDLRRPLVHTPHSLGGFLQEATGIGGPAVTVATAC
                     SSSAKVFAQAARLLQAGIVDAALVGGVDTLCGSVLYGFNSLGLVSRQPARPFDVARDG
                     LSLGEAGGFAVLERGDDADLLLRGYGESSDAHHMSAPHPEGLGARLAMEDALARAGIG
                     AGEVGYLNLHGTATPANDAVEARAVAALFPPTLHAGSTKGWTGHTLGAAGIVESAIAL
                     LALRDGLLPGTLNSSAPDPACGPQVRFDNAEGQVRFAMNNSFGFGGNNCSLLFGRA"
     gene            4201..>4482
                     /locus_tag="VLM17_03955"
     CDS             4201..>4482
                     /locus_tag="VLM17_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64746.1"
                     /translation="MSTRAAHRLSLFGDRDVLHAGVVAAAACVLSAGLVYLGYFMHVL
                     RTARRAPTRPRAARTLLLFGKHAPQGRIDRDFEARLDRVASLWREAPPAS"
BASE COUNT          616 a         1592 c         1709 g          565 t
ORIGIN      
        1 agcaacgccc agtagaaggt gtagtcccag atgatcttga ccggcatcac cagtgcgtcg
       61 ccgaacagcg cgtactggtc ctggtacagg gtcatggtgt tgtcgtagaa cgagcggtac
      121 agctgctggt agatctcggc atgggccgcg aacggacggc cgtcgcggtc gcgcgcgacc
      181 aggtcggcga tgtagccgtt ggagatggcg atgaagtcgc tgcccggcga gtagaacggg
      241 tcgaggaaca gcccggcctc gccggtcagc gcccagcgcc gcgccgagaa cacctgtttg
      301 cagccgtgcg agaagtggcg caggaacagg aagtcccgca gccggtgccg cggctggtcg
      361 agggcggcgg cgagcgccgg ctggtgcacg cgcagccagg ccatcgcctt ggcatgggtg
      421 tcgagcgtgc ccagcggatg cagcgcgccg tcggcgacga tcccgatcga gtgcgcgccg
      481 gacgacagcg ggatcagcca cacccagtag cccgggccgc acaggtggtt ggtcgagcgc
      541 cagcggtccg gcggggtgca gcgcgccagc cagtcggcgt cctgcgtcca ggcgtgcggg
      601 tcgacgatgc cgtccacccg ccaccacacc gcgttgacgt cgtggtcgtt ggcctcggcg
      661 aggtcgagct tgcgccggag caggccggcg cggccgctgg cgtcgaccag ccagcgcgcg
      721 ccgagcgcgt gggtcgcgcc ctcgtgctcg aacccgatgc gatgcgcttc ctcgccgtcg
      781 ccgagttcga tcgcgcgcac caccgcgccg tcgcggaact ccacgccgag ggagcgcgcg
      841 tgcgcgccga ggaagttctc gaagcggccg cggtcgagct gccaggacgg cgtcggcagc
      901 agctggctga cgccgagttc ggtgcagcgc tcgatcgcct gctggccgtc ggaaaagaag
      961 aagcggaagc cgaacttgcg gacgtgctcg cgctgcaggt gcgcttccag cccgagcact
     1021 tcggcgaagt agtgcgcgcc gatctcgacc gtggactcgc cgaccttgaa cgccgcttcc
     1081 ggcaccggat gcgcgcgccg ctcgagcacg gtcaccgcca gcgcgggatc gcgctggcgg
     1141 agctggatcg cgaggctcag gccggcgagg ccgccgccga ggatgacgac gtcgcgcgcg
     1201 tcgctcgccg cgccggtcat ccggcgcgct gcatgtcgga ctcggcgaac acggtgccga
     1261 actcgccggt cggatcgtcg atcaccggcg gcgtggcgcg ggtgtgcagg tattcgcgca
     1321 gcacgtcgcc gtgctggatc acctgccgca ccacgtgcga ggtgatccgc cacaggtcgc
     1381 gcagcgggcg gaagtggctg gcgcggaact tcggcgcctc gtcgtcgtgg acctgcgcgt
     1441 agcgcgactc gatcggcacc gagacgatgc cggcgccgac gcggcgcacc gccgagatca
     1501 ggatctgcgc ctcgtagacg aagtcctcgc ccggcacgtc gtcgagcgcg gcgaccgcgc
     1561 cggggtacag gcgctgcccg ctctgcgaat cggcgatgcg caggccgcag gcccagccga
     1621 tgccccagtc gccgaattcg ttcgcgagcc gccggtacag cggctggttg acgcgcttgc
     1681 gcaggcgcgc gccgatcacg atcgcccccg gatggcggtt gccggcctcg agcaggcgcg
     1741 gcacgtcctc cgccgcgtgc tggccgtcgc catccatcgt caccaccgcg gccgcgccga
     1801 gcttgagcgc cgcgcggaag ccgtcgcgca gcgacgcgcc cttgcccatg cgccgcgggt
     1861 gccgcagcag cgtcaccggc aggtcggcga tgcggtcgac ggtgtcgtcg tcggagccgt
     1921 cgtcgaccac gacgacggtg tcgcactggg cgagcgcgcc ctcgaccacc tcgcggatgc
     1981 gcaaggcctc gttgagcgcg ggaatgacga tggcgaccgt gtggcggtcg aggcggacgg
     2041 gcagggcagg ggtttcagcc ataggcgatc tccacccgca gggcacgacg cggaccggcg
     2101 tgcaggctga gcagatcatg cccggaggcc agtgcctgga acaacggcag catcggcgcc
     2161 atggcattgc cgcccgcgag cccggccagc ggaccctggg gcggcggggc gtcggcgtcc
     2221 accagggtcg tgcgcaagcg tggcgcaccc gcgtgtgaag gcgacgacag caccagcgcg
     2281 gcgccgagca ggccggagct gttcgagatc ggcgcgaacg ggccgggggc ggcggtatcg
     2341 taggccacca gcaggaccgc cggcgcgccc gcgtgcagct gcgccatcgc ctcgaccagg
     2401 ccctgcgcga acgacgcgtc gtacgcgctc agcgcggtcg ccggctcggt gcagccggtg
     2461 ccgatcgtcc agtagccggc ggcggcgttg tgcaccgaat tgtggaagcg ggtcggggag
     2521 acgctggccg ggtcgctggc gagcgtactg cagatgtagt cggtgatcga caggtcgccg
     2581 tgggtggagg cgaacaccga cggcaacgtg gccggatcgc gcccggccgc ctggcaggcg
     2641 gcgaaggcca cctcgagcgc gaccgcgacg ctttccggcg cgcggcggcg ctcgttcggc
     2701 gcgagcagtt gcggcgaggg ccgcgcgggc gcgtcgtccg gccgcgtgcc gtcgcgcacg
     2761 aacgcctgcg cgtccgccca cgagggcagg ccgttgcacc agaagccgac gccctcgagc
     2821 gtggcgttga gcgtgttctt gccggggatc atcggaagcc cttcatgcgc gcccgaacag
     2881 cagcgagcag ttgttgccgc cgaagccgaa tgaattgttc atcgcgaagc gcacctggcc
     2941 ttcggcattg tcgaagcgca cctgcgggcc gcaggcgggg tcgggcgcgc tgctgttgag
     3001 ggtgcccggc agcaggccgt cgcgcagcgc gagcagcgcg atcgccgact cgacgatgcc
     3061 ggccgcgccg agcgtgtgcc cggtccagcc cttggtcgaa ccggcgtgca gggtgggcgg
     3121 gaacagcgcg gccaccgcgc gcgcctcgac cgcgtcgttg gccggcgtgg ccgtgccgtg
     3181 caggttgagg tagccgacct cgcccgcgcc gatccccgcg cgggccagcg cgtcctccat
     3241 cgccaggcgg gcgccgagcc cctccgggtg cggcgccgac atgtggtggg cgtcgctgga
     3301 ttcgccgtag ccgcgcagca gcaggtcggc atcgtcgccg cgctcgagca cggcgaaacc
     3361 gccggcctcg ccgagcgaca gtccgtcgcg cgcgacgtcg aacggccgcg ccggctggcg
     3421 cgacaccagc cccagcgagt tgaagccgta cagcacgctg ccgcacaggg tgtccacgcc
     3481 gccgaccagc gcggcatcga cgatccccgc ctgcagcagg cgcgcggcct gggcgaacac
     3541 cttggcgctc gacgagcagg cggtcgccac cgtcaccgcc ggcccgccga tgccggtcgc
     3601 ctcctgcagg aacccgccca gcgaatgcgg ggtgtgcacc agcggccggc gcaggtccgg
     3661 cgggaaggcg ccgtcctcga ggcgcgcgta ggcctcctcg gtggcgccga tgctggacgt
     3721 cgaggtgccg accaccagcg cgacgcggtc cgggccgtgg cggctgagcg ccgagcgcag
     3781 cgcggcctgc aggtcgtcct gctgcagcgc cagccaggcg aggcggttgt tgcggcattc
     3841 ccagcgcgcc aggcgcgccg gcagcggcgc gtcctcgagg ccgtcgaccc ggccgatcca
     3901 ggtggcgagg ccggcgtcgc cgaagtcgtt gcggcgcagg ccgctgcggc gcgcgcgcag
     3961 ggcgtcggcc tgcgcggcga ggccgcggcc gagggcggtg gtggcggtga aggcgcggat
     4021 ggccagcggc ggcatcggct gcggcgacgt cgttggcaaa caggactccg gggtcgtgcg
     4081 ggaaagccgg cgccggaccc gcgcgccgga tgaatgcggt gccccggaac acccgaagcg
     4141 tgacgcgagt atagccagcg agacgcgcga aaccgcgcac cggtcactac acttcacgcc
     4201 atgtccacgc gcgccgccca ccgcctctcc ctgttcggcg atcgcgacgt cctccacgcc
     4261 ggcgtggtcg cggcggcggc gtgcgtgctg agcgcgggac tggtctacct cggctacttc
     4321 atgcacgtgc tgcgcaccgc gcggcgcgcg ccgacccgcc cccgcgccgc gcgcaccctg
     4381 ctgctgttcg gcaagcacgc gccgcagggc cggatcgacc gcgatttcga ggcgcgcctg
     4441 gaccgcgtcg cgtcgctgtg gcgcgaggcg ccgccggcct cg
//
LOCUS       DATIQC010000189         3752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_542719, whole genome shotgun sequence.
ACCESSION   DATIQC010000189 DATIQC010000000
VERSION     DATIQC010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542719"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2495)
                     /locus_tag="VLM17_03960"
     CDS             complement(<1..2495)
                     /locus_tag="VLM17_03960"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="error-prone DNA polymerase"
                     /protein_id="HSR64747.1"
                     /translation="MPAPPPCEPLPPPYAELHCLSDFSFGRGASSAGELFERARQQGY
                     AALAITDECSLAGIVRALEASRATGLKLIVGSEVTVDADGDAPLKLVLLVEDRTGYGS
                     LCRLLTQGRRCSAKGEYRLTRADLEADALPGLLVLWVPDARRAHADGAWLRQRFEGRL
                     WVAVELHRGPDDARRLLELLALADGLALPAVASGDVHMHVRGRRALQDTMTAIRLRTT
                     LAEAGRRLFPNGERHLRTRRALAAIHPRRLLEESARIAERCRFDLGEPLGYEYPHELV
                     PAGHTPASWLRELVEAGGRERWPEGMDAKTRDLVGKELALIAKKQYEPFFLTVHDVVR
                     YARSQAILCQGRGSAANSVVCYALGITAIDPARMDLLFERFLSDERDEPPDIDVDFEH
                     ERREEVIQYVYRRYGRERAAIAATVIRYRARSAVRDVARALGLPEDQVAQLGRTVGAW
                     SSDAPAAERLREYGFDPASPSMRRLRQLVAELLGKPRHLSQHVGGFVISEHPLHALVP
                     VENAAMAERTIIQWDKDDLDTMRMIKVDVLALGMLTCIRKALDLVRVHRGEDHALATI
                     PKEDGDTYRMIQRGDVIGVFQIESRAQMAMLPRLKPETFYDLVIEVAIVRPGPIQGGM
                     VHPYLRRRQGQEPVDYPSEKLRAVLQRTLGVPLFQEQVMRIAMEAAGYTPGQADQLRR
                     DMAAWKRHGGLDRHRDALLGGMAANGYPAEFAERIFEQIKGFGDYGFPESHAASFALL
                     TYSSSWIKCHHPEAFACALLNSLPMGFYQPPQIVDDARRHGIDVRPVDVRFSSWDCTL
                     EVEDSLPRHPNPLTRAGEGERQPLALRLGLRLVR"
     gene            complement(2588..>3752)
                     /locus_tag="VLM17_03965"
     CDS             complement(2588..>3752)
                     /locus_tag="VLM17_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase Y family protein"
                     /protein_id="HSR64748.1"
                     /translation="AWAYRYSSQVTQAFEGAIALEIGASLRLFGPWPRFERQLREDLA
                     ALGFVHRLAVAPNARAAWLLAGAQDGLAITHAATLDGALARLPIAHARLDPKAAHALH
                     AMGLRRVAQLFAAPRDSLARRFGPGLLEHLDRLRGAPDPFDLYRPPDRFDLRIELAYD
                     IETSQALLFPLRRMTADLAAFLAGRDGGVQRFVLRLEHEGHADTEVAVGLLAAEREAT
                     LLFDLARGRLEQARIPAPVRGLRLTADELPPFVPAGRELFDERPAQAVPWPALRERLR
                     ARLGDDAVHALAPADDHRPERAWRRVPLPVPAKMPPASAPRPTWLLHRPIPLRERVRA
                     VLSGPERLESGWWDEGDVRRDYYVVETTGGQHAWVYRPAGDAEGGFMLQGWFA"
BASE COUNT          512 a         1305 c         1421 g          514 t
ORIGIN      
        1 cgcacgaggc gcaggccgag gcgcagggcg agtggctgtc gttccccctc tcccgctcgc
       61 gtgaggggat tggggtgacg gggaaggctg tcttcaactt ccagcgtgca gtcccagctg
      121 ctgaagcgca cgtccaccgg ccgcacgtcg atcccgtgcc ggcgcgcgtc gtcgacgatc
      181 tgcggcggct ggtagaagcc catcggcagc gagttgagca gcgcgcaggc aaaggcctcg
      241 ggatggtggc acttgatcca cgagctggag taggtgagca gcgcgaagct cgccgcatgc
      301 gactcgggga agccgtagtc gccgaagccc ttgatctgct cgaagatgcg ctcggcgaat
      361 tcggccgggt agccgttcgc cgccatgccg ccgagcaggg cgtcgcgatg ccggtcgagg
      421 ccgccatggc gcttccacgc ggccatgtcg cggcgcagct ggtcggcctg gccgggcgtg
      481 tagccggcgg cctccatcgc gatgcgcatc acctgttcct ggaacagcgg cacgccgagc
      541 gtgcgctgca gcaccgcgcg cagtttctcc gacggatagt cgaccggctc ctggccctgc
      601 cgccggcgca ggtagggatg caccatgccg ccctggatcg ggcccgggcg gacgatggcg
      661 acttcgatca cgaggtcgta gaaggtttcc ggcttcagcc gcggcagcat cgccatctgc
      721 gcgcgcgact cgatctggaa cacgccgatc acgtcgccgc gctggatcat ccggtaggtg
      781 tcgccgtcct ccttcgggat ggtcgccagc gcgtggtcct cgccgcgatg cacgcggacc
      841 aggtcgagcg ccttgcggat gcaggtcagc atgccgagcg cgagcacgtc gaccttgatc
      901 atccgcatgg tgtcgaggtc gtccttgtcc cactggatga tcgtgcgctc ggccatcgcc
      961 gcgttctcca ccggcaccag cgcgtgcagc ggatgctcgg agatcacgaa gccgccgacg
     1021 tgctgcgaca ggtggcgcgg cttgccgagc agttcggcca ccagctggcg cagccgccgc
     1081 atcgacgggc tggccggatc gaagccgtat tcgcgcagcc gctcggcggc gggcgcatcg
     1141 ctgctccacg cgcccacggt gcgaccgagc tgggcgacct ggtcctcggg caggccgagc
     1201 gcgcgggcga cgtcgcggac cgcgctgcgc gcgcggtagc ggatcacggt ggcggcgatc
     1261 gcggcgcgct cgcggccgta gcgtcggtac acgtactgga tgacctcctc gcggcgctcg
     1321 tgctcgaagt cgacgtcgat gtcgggcggc tcgtcgcgtt cgtccgagag gaaacgctcg
     1381 aacagcaggt ccatgcgcgc cggatcgatc gcggtgatgc cgagtgcgta gcagaccacc
     1441 gagttggcgg ccgagccgcg gccctggcag aggatggcct gcgaacgggc gtagcggacg
     1501 acgtcgtgga cggtgaggaa gaagggctcg tactgcttct tcgcgatcag cgcgagttcc
     1561 ttcccgacca ggtcgcgcgt cttcgcgtcc atgccttccg gccagcgctc gcggccgccg
     1621 gcctcgacga gctcgcgcag ccagctggcc ggcgtgtggc cggccggcac cagctcgtgc
     1681 gggtattcgt agccgagcgg ctcgccgagg tcgaagcggc agcgttcggc gatgcgcgcg
     1741 ctttcctcca gcagtcggcg cggatggatc gccgccagcg cgcgccgcgt gcgcaggtgg
     1801 cgctcgccgt tggggaacag gcggcggccg gcttccgcca gcgtggtgcg caggcggatc
     1861 gcggtcatgg tgtcctgcag cgcgcggcgg ccgcgcacgt gcatgtgcac gtcgccgctg
     1921 gcgaccgcgg gcagggcgag gccatcggcg agcgcgagca gctcgagcag gcgtcgcgca
     1981 tcgtccgggc cgcggtgcag ttccaccgcc acccacagcc ggccttcgaa gcgttgccgg
     2041 agccaggcgc cgtccgcatg cgcgcggcgc gcgtccggca cccacagcac gagcaggccg
     2101 gggagggcgt cggcctcgag gtcggcgcgg gtgagccggt attcgccctt ggccgagcag
     2161 cggcggccct gcgtgagcag ccggcacagc gagccgtaac ccgtgcggtc ctcgaccagc
     2221 aggaccagct tgagcggtgc atcgccatcg gcatcgacgg tgacttcgct gccgacgatc
     2281 agcttcagcc cggtggcgcg cgaggcttcc agcgcacgga cgatgccggc gagcgagcat
     2341 tcgtcggtga tcgcgagcgc ggcgtagccc tgctgccggg cgcgttcgaa cagctcgccc
     2401 gcgctggacg caccgcggcc gaaactgaag tcggagaggc agtggagttc ggcgtagggg
     2461 ggaggaagcg gctcgcatgg tggtggcgcg ggcatggagg ccggggaagc gccggcatcc
     2521 gccggccgcc cgccgccacc ttcgaccacg cgcagcgcgg gtttccgcgg gggatcgtcc
     2581 gcgccgctca cgcgaaccac ccctgcagca tgaagccgcc ttcggcatcg cccgccgggc
     2641 gatacaccca tgcgtgctgg ccgcccgtgg tttcgacgac gtagtagtcg cggcgcacgt
     2701 cgccttcgtc ccaccagccg ctttccagcc gctcggggcc gctgagcacg gcgcgcacgc
     2761 gctcgcgcag cggaatgggc ctgtgcagca gccaggtcgg gcgcggcgcg ctggcgggcg
     2821 gcatcttcgc cggcaccggc aacggcaccc gtcgccatgc gcgttcggga cgatggtcgt
     2881 cggccggcgc cagggcgtgc accgcgtcgt cgccgaggcg cgcgcgcagg cgctcgcgca
     2941 acgccggcca cggcaccgcc tgcgcaggac gctcgtcgaa cagttcgcgt ccggccggca
     3001 cgaacggcgg cagctcgtcg gcggtgagtc gcaggccgcg caccggcgcg ggaatgcgcg
     3061 cctgctcgag gcggcccctg gcgaggtcga acagcagcgt cgcctcgcgc tcggcggcga
     3121 gcaggccgac cgcgacttcg gtatccgcgt ggccctcgtg ctccagtcgc agcacgaagc
     3181 gctgcacgcc accgtcgcgg ccggcgagga aggcggcgag gtcggcggtc atgcgccgca
     3241 gcgggaacag cagcgcctgc gaagtctcga tgtcgtacgc cagctcgatg cgcaggtcga
     3301 agcggtctgg cggacggtac aggtcgaagg ggtcgggcgc gccgcgcagg cggtcgaggt
     3361 gttcgagcag gcccgggccg aagcggcgtg ccagcgagtc gcgcggggcg gcgaacagct
     3421 gcgccacccg tcgcagcccc atcgcgtgca gcgcgtgcgc ggccttcgga tccagtcgtg
     3481 catgcgcgat cggcaggcgc gcgagcgcac cgtcgagcgt cgccgcgtgg gtgatggcga
     3541 ggccgtcctg cgcgccggcc agcagccagg ccgcgcgcgc gttcggcgcg accgcgaggc
     3601 ggtggacgaa gccgagcgcg gcgaggtcct cgcgcagctg ccgctcgaag cgaggccatg
     3661 gcccgaacag gcgcaggctg gcgccgattt ccagcgcgat cgcgccttcg aaggcctgcg
     3721 tgacctgcga gctgtaacgg taggcccagg cg
//
LOCUS       DATIQC010000190         2772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_83412, whole genome shotgun sequence.
ACCESSION   DATIQC010000190 DATIQC010000000
VERSION     DATIQC010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83412"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..518)
                     /gene="pdxH"
                     /locus_tag="VLM17_03970"
     CDS             complement(<1..518)
                     /gene="pdxH"
                     /locus_tag="VLM17_03970"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010381128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HSR64749.1"
                     /translation="MNDDALYAEALATFDALFDEARVAGEPDRTAMVVATATLDARPS
                     ARTVLLKAHDARGFVFYTHLDGRKGRELQANPHAALLFHWPRVRQGVQVRIEGAVEIV
                     SEAEADAYFASRPRGSQLGAWASRQSETLEARADFDQRLAQAEREFDGRDVPRPPRWT
                     GLRVKPERIEFW"
     gene            536..1369
                     /locus_tag="VLM17_03975"
     CDS             536..1369
                     /locus_tag="VLM17_03975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019186072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase"
                     /protein_id="HSR64750.1"
                     /translation="MQDDPHPDPAHSGRNPGYAPEFVAGVLDDALAHDCRVYAISGLQ
                     GTGKSTLSAQMAALAKQRGLRVVALSIDDFYLGHAQRQALGRRVHPLCATRGPPGTHE
                     VALARDVLDALRDRREVALPRFDKIADDRLPRAEWPIARDTDLTVLEGWFLETPPQSA
                     AELVEPINALERDEDADGDWRRWCNQALADDYPPLWGRLDRMLFLQGPGFDVVPEWRW
                     QQEQSLQAQHPERKAMSHAQVLRFVQFFERVSRQSLRTLPGIAERTIRLDAWRHPLPP
                     R"
     gene            1672..2211
                     /locus_tag="VLM17_03980"
     CDS             1672..2211
                     /locus_tag="VLM17_03980"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HSR64751.1"
                     /translation="MNPAPNLVLVGPMGSGKTSIGRRLAERFALAFVDADREIEAQAG
                     ASIATIFDCEGEAGFRARERATLARLLDGEGQVLATGGGAVLDAGTRGLLRARGFVVH
                     LQVSVDGQLQRLSRDRVRPLLQQGDRAQVLQALAQARAPLYAEVADLVFDTEGLAAGD
                     AARTLVVALQGAWKRGAAA"
     gene            2208..>2772
                     /locus_tag="VLM17_03985"
     CDS             2208..>2772
                     /locus_tag="VLM17_03985"
                     /EC_number="4.2.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009600006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase family protein"
                     /protein_id="HSR64752.1"
                     /translation="MTGLIDVRSLAVGGAAPYTITIGPGLLDDGAALATHVRGRHVLV
                     ASDSHVGPLYAARLVAALSAHTRAQVLVSCIAAGEASKTLAGFAELMRELADFGATRD
                     ACVFALGGGVVGDLAGFAAACWMRGIDIVQLPTSLLAMVDSSVGGKTAIDLAQGKNLV
                     GAFHPPRALFADTTTLRTLPGRELRAGL"
BASE COUNT          341 a         1057 c          978 g          396 t
ORIGIN      
        1 taccagaact cgatccgctc gggcttcacc cgcaagccgg tccagcgcgg cgggcggggg
       61 acgtcgcggc cgtcgaactc gcgttcggcc tgcgccagcc gctggtcgaa gtccgcgcgc
      121 gcctccagcg tctccgactg cctggaggcc cacgcgccga gctggctgcc gcgcggacgg
      181 ctggcgaagt aggcatcggc ttcggcctcg gacacgatct ccaccgcgcc ttcgatccgc
      241 acctgcacgc cctgccgcac gcgcggccag tggaacagca gcgcggcgtg cgggttggcc
      301 tgcagctcgc ggcccttgcg cccgtcgaga tgggtgtaga agacgaagcc gcgcgcatcg
      361 tgcgccttca gcagcaccgt gcgcgccgac gggcgtgcgt cgagcgtggc ggtggcgacc
      421 accatcgccg tgcggtcggg ctcgccggcc acgcgcgcct cgtcgaacag cgcgtcgaac
      481 gtcgcgaggg cttcggcgta cagggcgtcg tcgttcattg cgctattgtc gcgcgatgca
      541 ggacgacccg catcccgacc ccgcccattc cggccgcaac cccggctacg ccccggaatt
      601 cgtcgccggc gtgctcgacg acgcgctcgc ccacgactgc cgcgtctacg ccatctccgg
      661 cctgcagggc accggcaagt cgacgctgtc ggcgcagatg gcggcgctgg cgaagcagcg
      721 cgggctgcgc gtggtggcgc tctcgatcga cgacttctac ctcggccacg cgcagcgcca
      781 ggcgctcggc cgccgcgtgc atccgttgtg cgcgacgcgc ggcccgccgg gcacgcacga
      841 ggtggcgctg gcccgcgacg tgctcgacgc cctgcgcgat cgccgcgagg tcgccctgcc
      901 ccgcttcgac aagatcgccg acgaccgcct gccgcgcgcg gagtggccga tcgcgcgcga
      961 caccgacctc accgtcctcg agggctggtt cctggagacc ccgccgcagt cggcggccga
     1021 actggtcgag ccgatcaacg cgctggagcg cgacgaggac gccgacggcg actggcgtcg
     1081 ctggtgcaac caggcgctcg ccgacgacta cccgccgctg tgggggcgcc tggaccgcat
     1141 gctgttcctg cagggccccg gcttcgacgt cgtgcccgaa tggcgctggc agcaggagca
     1201 gtcgctgcag gcacagcatc ccgaacgcaa ggcgatgtcg cacgcgcagg tgctgcgctt
     1261 cgtgcagttc ttcgagcggg tcagccgcca gtcgctgcgc acgctgccgg gcatcgccga
     1321 gcgcaccatc cggctcgacg cgtggcggca tccgctgccg ccgcgctgat agacggagcc
     1381 gccactcgac cacgaaggtg atccgcaggt cgacccgccg ctcctctacg ttgccggcgt
     1441 cgccggtcac caccttgctc tcgttgaccc gggcgccctt gatggtcttc gccgattcgg
     1501 cgcatttctt cagcccggtt tcaccgcttc ctccatgacg gtgcgcgagg cggcgtcgag
     1561 ctcgattgcc ttggcgacgg acagggtcca gctcctcgag gcggcgggcc ccgccagagc
     1621 ctggagccgc gcctctcaag ccggcgcgag gtcgctgcta gcatgccggc catgaatccc
     1681 gcgcccaatc tcgtgctcgt gggcccgatg ggctccggca agacctcgat cggccggcgc
     1741 ctggccgagc gcttcgcgct cgctttcgtc gacgccgatc gcgagatcga agcgcaggcc
     1801 ggcgccagca tcgcgaccat cttcgactgc gaaggggaag ccggcttccg tgcgcgcgag
     1861 cgcgccaccc tcgcgcggct gctcgacggc gaaggccagg tgctcgccac cggcggcggc
     1921 gccgtgctcg acgccggcac gcgcggcctg ctgcgcgcgc gcggcttcgt cgtgcacctg
     1981 caggtcagcg tggacggcca gctgcagcgc ctctcgcgcg accgcgtgcg cccgctgctg
     2041 cagcagggcg atcgcgcgca ggtcctgcag gcgctggcgc aggcgcgcgc gccgctgtat
     2101 gcggaagtcg ccgacctcgt gttcgatacc gagggcctcg cggccggcga tgcggcgcga
     2161 acgctcgtcg tggcgctgca gggcgcctgg aagcggggcg cggccgcatg accggcctca
     2221 tcgacgtccg cagcctcgcg gtgggcggcg cggcgcccta cacgatcacc atcggcccgg
     2281 gcctgctcga cgacggcgcg gccctcgcca cgcacgtgcg cggccgccac gtgctcgtcg
     2341 ccagcgacag ccacgtcggg ccgttgtacg ccgcgcgcct ggtcgccgcc ttgtccgcgc
     2401 atacgcgcgc gcaggtgctg gtgagctgca tcgccgccgg cgaggcgtcg aagacgctcg
     2461 ccggcttcgc cgagctgatg cgcgagctcg ccgatttcgg cgcgacccgc gacgcctgcg
     2521 tgttcgcgct gggcggcggc gtggtcggcg acctcgccgg tttcgccgct gcctgctgga
     2581 tgcgcggcat cgacatcgtg cagctgccga cctccctgct ggcgatggtc gattcctcgg
     2641 tcggcggcaa gaccgcgatc gacctggcgc agggcaagaa cctggtcggc gccttccacc
     2701 cgccgcgcgc gctattcgcc gataccacga ccctgcgcac cctgcccggg cgcgaactgc
     2761 gcgccggcct cg
//
LOCUS       DATIQC010000191         1809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_401328, whole genome shotgun sequence.
ACCESSION   DATIQC010000191 DATIQC010000000
VERSION     DATIQC010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401328"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..>1809)
                     /locus_tag="VLM17_03990"
     CDS             complement(189..>1809)
                     /locus_tag="VLM17_03990"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR64753.1"
                     /translation="FGLQAGGGADGGIRAASWWGAPWRAAESGGYRLDGERYDTGGYR
                     AHGRARRDIAQARLRWEAGGARLALTANALDLSAQDPQGLTLAQALATPRAASAGALA
                     FDTRKRVRQRQLGLRVEHPLGDGDAVTASAWAGRRATFQMLSVPAAAQAAPGSGGGVV
                     DLDRDYGGIDARWRHRLLGGVRPLDLTVGAQWQRSSEHRLGHENFVGARLGVTGALRR
                     DEQDTVEDRDAYAEARWRFARRWNATLGVRRSVVAFRSDDAYVAAGNPDDSGRLRHAQ
                     TSPVLGLLYAPGEGVELFANAGRGFETPAFSELAYRSDGSSGLNTALRPARSRSAEFG
                     ARVRRGEHVLEAAAFASRTDDELVVASNSGGRSTYANATRSARDGWELSANGPLAPRW
                     RYALALTRLDARYTRAFATCRTPPCTTPDTQVAAGSRIPATADAGWAELRWSPRTNLD
                     LFVQAEATARLYADDANSAWAPGHATFDAGVQRRWRIGGHALTASARIDNLLGRRTIG
                     SVIVDDANGRYFEPAPGRGAWIGLAFEPLDP"
BASE COUNT          208 a          684 c          685 g          232 t
ORIGIN      
        1 cgcgcagccg caacgcgcgt ccatcgacct cgctgccggg gaaccggtgc ctgtggtccg
       61 gcagcgcggc gatcgcgctc ccgaccgcgc acttggtgcc ctgcatccat ggcgcgttgc
      121 gcgggtcgac ctgcatgggc cctgtcctcc gttcgggcga cgctaggggg ccggtggtga
      181 aggagcgatc acgggtccag gggctcgaat gccagcccga tccacgcgcc acgccccggc
      241 gcgggctcga agtagcggcc gttggcgtcg tcgacgatca ccgaaccgat cgtgcgccgg
      301 ccgagcaggt tgtcgatgcg cgcggacgcg gtcaacgcgt ggcccccgat gcgccagcgc
      361 ctctggacgc cggcgtcgaa ggtcgcatgg cccggcgccc atgcgctgtt ggcgtcgtcg
      421 gcgtacaggc gcgcggtcgc ctccgcctgc acgaacaggt cgaggttcgt gcgcggcgac
      481 cagcgcaact ccgcccagcc ggcgtcggcc gtggccggga tgcggctgcc ggccgcgacc
      541 tgcgtgtccg gcgtcgtgca cggcggcgtg cggcaggtgg cgaacgcgcg ggtgtagcgc
      601 gcgtcgaggc gggtgagcgc gagcgcgtag cgccagcgcg gcgccagcgg accgttcgcc
      661 gaaagttccc agccgtcgcg ggcgctgcgg gtcgcgttcg cgtaggtgct gcgcccgccg
      721 ctgttgctcg ccaccaccag ttcgtcgtcg gtgcgactgg cgaaggcggc ggcttcgagg
      781 acgtgttcgc cgcggcgcac gcgcgcgccg aattcggcgc tgcggctgcg cgcggggcgc
      841 agcgcggtgt tgaggccact gcttccgtcg ctgcggtagg ccagctcgga gaacgccggc
      901 gtctcgaagc cacgccctgc gttggcgaac agttcgacgc cctcgcccgg ggcatacagc
      961 aggccgagca cgggcgaagt ctgggcatgg cgcagtcggc cgctgtcgtc cggattgccg
     1021 gccgcgacgt aggcgtcgtc ggagcggaac gcgaccacgc tgcgccgcac gccgagggtt
     1081 gcgttccagc gccgcgcgaa gcgccagcgt gcctcggcgt acgcatcgcg gtcctcgacg
     1141 gtgtcctgct cgtcgcgccg cagcgcgccc gtcacgccca ggcgcgcgcc gacgaagttc
     1201 tcgtgtccga gccgatgctc gctgctgcgc tgccattgcg cgccgacggt gaggtcgagc
     1261 ggacggacgc cgccgagcag gcggtgccgc cagcgcgcat cgatgccgcc gtagtcgcgg
     1321 tcgaggtcga ccacgccgcc gccgctgccc ggcgcggcct gcgccgccgc cggcaccgac
     1381 agcatctgga aggtcgcgcg ccggcccgcc cacgcgctcg cggtgacggc atcgccgtcg
     1441 ccaagggggt gctcgacgcg caacccgagc tgccgctggc gcacgcgctt gcgggtgtcg
     1501 aaggcgagcg cgccggcact ggccgcgcgc ggcgtcgcca gcgcctgcgc gagggtgagg
     1561 ccctgcggat cctgcgcgga caggtcgagc gcgttggcgg tgagcgctaa ccgcgcgccg
     1621 cccgcctccc accgcaaccg cgcctgcgcg atgtcccgcc gcgcccggcc atgcgcgcgg
     1681 tagccgccgg tgtcgtaacg ctcgccgtcc agccggtagc cgccgctctc cgccgcgcgc
     1741 cacggcgcgc cccaccacga cgccgcgcgg atgccgccat ccgcgccacc gccggcctgc
     1801 aggccgaac
//
LOCUS       DATIQC010000192         2318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_472397, whole genome shotgun sequence.
ACCESSION   DATIQC010000192 DATIQC010000000
VERSION     DATIQC010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472397"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VLM17_03995"
     CDS             complement(<1..392)
                     /locus_tag="VLM17_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR64754.1"
                     /translation="MSEVVNLAKELILRHSVTPEDAGCQALLAERLQRAGFACEALRF
                     GEVDNLWATHGGGGPVLVLLGHTDVVPAGPREAWSSDPFVPEVRDGVLYGRGAADMKG
                     SVAAFVVALEGFVAAHPRHPGTVALLLTS"
     gene            complement(389..748)
                     /locus_tag="VLM17_04000"
     CDS             complement(389..748)
                     /locus_tag="VLM17_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003485342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HSR64755.1"
                     /translation="MTTLYGLANCDTCRKARKWLDRFGVAHAFIDYRDERQSPDTLVQ
                     WKDRLGGWDAMINKSSTTWRSLPPNRREPASDAEWKLLLKEYPQLIRRPVVVTDDGVV
                     TQGFTDNGFKQRFGAGK"
     gene            complement(884..1792)
                     /gene="dapD"
                     /locus_tag="VLM17_04005"
     CDS             complement(884..1792)
                     /gene="dapD"
                     /locus_tag="VLM17_04005"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008576699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008666 -
                     2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HSR64756.1"
                     /translation="MTERKTRKTPVAKATRKRAPARTIPQGEGHEELRFTIDSAWERR
                     TMLTIDEIEGSTRPTVERVIDGLERGDFRVAEPDGKGGWTVNEWLKKAVLLYFRVREM
                     ELIDGEPSPFWDKVPSRFSGFGESDFRRLGARVVPGAIARRGAHIGKDVVLMPSFINI
                     GAHVGAGTMVDTWATVGSCAQVGKHCHLSGGAGIGGVLEPLQASPTIVEDHCFIGARS
                     EVVEGFVVGHHSVIGMGVFLGQSTRVYDRATGETSYGRVPPYSVVVSGQLPSKDGSHS
                     LYCAVIVKQVDAKTRAKTSINDLLRG"
     gene            complement(1789..>2318)
                     /locus_tag="VLM17_04010"
     CDS             complement(1789..>2318)
                     /locus_tag="VLM17_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008576698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HSR64757.1"
                     /translation="HSPDRDGLFAAIVATLDRAGLAIQQARLLDGPGATVFDTFEVLP
                     AEGRAAVAADEVEQRLAATLALPDLDAVRPARRAQPRHLRHFRRVPQVAFGDGGRRTV
                     LSLVCTDRPGLLADVTRVLRARRLRVHDARIATFGERAEDVFRITDERERPLDEPQQQ
                     ALRDALLACLDGETA"
BASE COUNT          343 a          842 c          785 g          348 t
ORIGIN      
        1 gaggtcaaca gcagcgcgac cgtgcccgga tgccgcggat gcgcggcgac gaagccttcc
       61 agcgcgacca cgaacgccgc cacgctgccc ttcatgtcgg ccgcgccgcg gccgtacagc
      121 acgccatcgc gcacttccgg cacgaacgga tcgctggacc atgcttcgcg cggtcccgcc
      181 ggcaccacgt cggtatgccc gagcaggacc agcaccggcc cgccgccacc atgggtcgcc
      241 cacaggttgt cgacctcgcc gaagcgcagc gcctcgcagg cgaagccggc gcgctgcagg
      301 cgctcggcga gcagcgcctg gcagccggcg tcctccgggg tcaccgaatg gcgcaggatc
      361 agttccttgg cgagattgac cacctcgctc acttgccggc tccgaaacgc tgcttgaaac
      421 cgttgtcggt gaagccctgc gtcaccacgc cgtcgtcggt caccaccacc ggccggcgga
      481 tcagctgcgg atattccttc agcagcagct tccattcggc gtcggacgcg ggttccctgc
      541 ggttcggcgg cagcgagcgc caggtcgtcg atgacttgtt gatcattgcg tcccagccac
      601 cgagccggtc cttccactgc accagcgtgt ccggcgactg gcgttcgtcg cggtagtcga
      661 tgaaggcgtg cgcgacgccg aagcggtcga gccacttgcg tgccttcctg caggtgtcgc
      721 agttggcgag gccgtagagc gtggtcaagt cagcatcctt tgaaaggttt accgaagccg
      781 tccatggcgc agcccaacgc tggctgatcg ccctgcccgg ccatccatgg ccgggcgttc
      841 ggaagcgcag ccattgccga gggcagcggc tgagcgcgct tcctcacccc cgcagcaggt
      901 cgttgatcga agtcttcgcg cgcgtcttcg catccacctg cttcacgatg accgcgcaat
      961 acagcgaatg cgacccgtcc ttcgacggca gctgcccgga gacgaccacg ctgtacggcg
     1021 gcacgcggcc gtagctggtc tcgccggtgg cgcggtcgta gacgcgggtc gactggccga
     1081 ggaacacgcc catgccgatc acgctgtggt ggccgacgac gaacccctcg accacctcgg
     1141 accgggcgcc gatgaagcag tggtcctcga cgatcgtcgg cgaggcctgc agcggctcga
     1201 gcacgccgcc gatgccggcg ccgccggaca ggtggcagtg cttgccgacc tgcgcgcagg
     1261 aaccgaccgt cgcccaggtg tcgaccatcg tgcccgcgcc gacatgcgca ccgatgttga
     1321 tgaagctcgg catcagcacc acgtccttgc cgatgtgcgc gccgcgacgg gcgatcgcac
     1381 ccggcaccac gcgcgcgccg agcctgcgga aatccgattc cccgaaaccg gagaagcgcg
     1441 aaggcacctt gtcccagaac ggcgacggct cgccgtcgat cagctccatc tcgcgcacgc
     1501 ggaaatacag cagcaccgcc ttcttcagcc attcgttgac ggtccagccg cccttgccgt
     1561 ccggctcggc gacgcggaaa tccccgcgtt ccaggccgtc gatcacgcgt tcgacggtcg
     1621 gccgggtgga gccctcgatc tcgtcgatgg tcagcatcgt gcgccgctcc cacgcgctgt
     1681 cgatggtgaa gcgcaattcc tcgtgccctt ccccctgcgg gatggtccgc gcgggcgcgc
     1741 gcttgcgcgt cgccttggcg acgggcgtct tgcgggtctt gcgttcggtc atgcggtttc
     1801 cccgtcgagg caggcgagca acgcgtcgcg cagcgcctgc tgttgtggtt cgtcgagcgg
     1861 gcgttcccgc tcatcggtaa tccggaacac gtcctcggcg cgctcgccga aggtcgcgat
     1921 gcgcgcatcg tgcacgcgca gccgccgggc gcgcagcacc cgggtgacgt cggcgagcag
     1981 gcccgggcgg tcggtgcaga ccaggctgag caccgtgcgc cggccaccgt cgccgaacgc
     2041 cacctgcggc acccggcgga aatggcgcag gtggcgcggc tgcgcgcgcc gcgccgggcg
     2101 caccgcatcg agatcgggca acgccagggt cgcggcgagg cgttgctcga cctcgtcggc
     2161 cgccaccgcc gcgcgtcctt ccgcgggcag cacctcgaag gtatcgaaca cggtggcgcc
     2221 ggggccgtcg agcaggcgcg cctgctggat cgccagcccg gcccggtcga gggtggcgac
     2281 gatcgccgcg aacaggccgt cgcggtcggg cgagtgca
//
LOCUS       DATIQC010000193         4607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_83607, whole genome shotgun sequence.
ACCESSION   DATIQC010000193 DATIQC010000000
VERSION     DATIQC010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4607
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83607"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1062)
                     /locus_tag="VLM17_04015"
     CDS             complement(<1..1062)
                     /locus_tag="VLM17_04015"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005911622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HSR64758.1"
                     /translation="MSDIVIAGAKRTAIGSFLGQFTGVPTPALGAAAIQGALAQAGIA
                     ADQVDEVIMGCVLPAGLGQAPARQAAIAAGIPTAAGCTTVNKVCGSGMKAVMFAHDLI
                     QAGSATIVVAGGMESMTNAPHLLNGSRTGIRYGSAEFLDHMAHDGLTNPYDGKAMGVF
                     GDMACGKYGFDRAALDAYSAESVRRAQAAQADGAFKDEIVPVTVKGRKGDVVVDGYEE
                     PGRIDAAKIPGLRPAFGKDGVLTAASSSKISDGAAAAVLLSADEARRRGIAPLARIVA
                     HSTHSQDPEWFTTAPVSAIGKVLKKAGWSVADVDLFEVNEAFSCVAMAPMHDLGIPHD
                     RLNVNGGAVALGHPIGASGA"
     gene            1217..2614
                     /gene="zwf"
                     /locus_tag="VLM17_04020"
     CDS             1217..2614
                     /gene="zwf"
                     /locus_tag="VLM17_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HSR64759.1"
                     /translation="MSRSTQMSDALVFFGATGDLAYKKIFPALQALFRDYSIELPIIG
                     VARGSGGLDSLKERMRDSLEHAGGVDPPVFDRLCANLQYVNGDYNDPATFDRLRQALE
                     GKQCPLHYLAIPPSLFCEVIGQLDRSGCARGARVVVEKPFGRDLESARALNATLHEVF
                     PESAVFRIDHFLGKEPVRNLLYYRFANAFLEPVWNRNFIDNVQITMAEDFGVQGRGSF
                     YDSVGAIRDVVQNHLLQVVALLAMDAPIGDDAAAIHAEKLRIFRAMRPLRPEDVVRGQ
                     FDGYRDEAGVKPDSSVETFVALKLQVDTWRWAGVPFYVRAGKCLPITATEVMVNLRCP
                     PMSIFEEAQPVRSNYFRFRLGPEMVIATGAQVKKPGEAMRGDEVELVARHLTLRGAPP
                     YERLLGDALRGDSSLFTRDAAVEAAWRVVDPVLDLPGPIGAYAPGTWGPADARSVLAG
                     DDGWHDPVAEVVAPC"
     gene            2608..3351
                     /locus_tag="VLM17_04025"
     CDS             2608..3351
                     /locus_tag="VLM17_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSR64760.1"
                     /translation="MLMSDAAGEVAGNVVFLLDVDNTLLDNDRFSADLDAALVGALGE
                     AGRVRYRAAYEALRDAHGYADYPGALQALRGDRLVDDAALLQLGDFLLDYPFGERVYP
                     GSHAALAHVATLGVPVILSDGDLVFQPRKIRRSGLWDAVQGRVLLSVHKERMLDAVQQ
                     AYPARHYVVVDDKPKVLQAIKENLGARVTTVFVHQGHYAREADLEHLQPPDLSLAHIG
                     ELVGLDTGKDVLLHRSLALVPELSSTAMP"
     gene            3348..4430
                     /gene="tal"
                     /locus_tag="VLM17_04030"
     CDS             3348..4430
                     /gene="tal"
                     /locus_tag="VLM17_04030"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015449175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HSR64761.1"
                     /translation="MNPNLQQLRALGQSLWLDNITRAMLDDGTLERRIAEWGLTGLTS
                     NPSIFDEAFSGGDAYDAGIREQAAAGKSGEALFIELALQDLRRAADLFRPAHEASQGV
                     DGWVSMELSPLLASDTAGSVAAAQRIHAQAGRDNLFVKIPGTPEGVPAIEESIFNGVP
                     INVTLLFSAGQYRAAAEAYMRGIERRLEAGRPPRVASVASLFVSRWDKAVADRAPEEL
                     RNRLGIAVGQKTYRAYRELLGSARWRRLEAAGALPQRLLWASTSTKDPDAPDTLYAAA
                     LAAPDTIDTLPDKTLAAFADHGRVQSQLGEDDGSATLARFADAGIDVDALGGQLQQEG
                     AAAFVKSWKHLLDGIGAKAAVLQGKA"
     gene            4427..>4607
                     /locus_tag="VLM17_04035"
     CDS             4427..>4607
                     /locus_tag="VLM17_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64762.1"
                     /translation="MKDAMRMQDPMPSASMPLTSRPQWQALREHAAANAGRTLRDLFA
                     RDPRRGERLCAEGAGL"
BASE COUNT          679 a         1634 c         1633 g          661 t
ORIGIN      
        1 cgcgccgctg gcgccgatcg gatggccgag cgcgacggcg ccgccattga cgttcagcct
       61 gtcgtgtgga atgccaaggt cgtgcatggg cgccatggcc acgcacgaga aggcctcgtt
      121 gacctcgaac aggtccacgt ccgcgacgct ccagccggcc ttcttcagca ccttcccgat
      181 ggccgacacc ggcgcggtgg tgaaccactc cgggtcctgc gaatgggtcg aatgcgccac
      241 gatgcgcgcg agcggcgcga tcccgcggcg cctggcctcg tcggcggaca acagcacggc
      301 cgccgcggcg ccatcggaaa tcttggacga cgaagccgcc gtgaggacgc cgtccttgcc
      361 gaacgccggg cgcaggcccg ggatcttcgc cgcatcgatc ctgcccggct cctcgtagcc
      421 gtcgacgacc acgtcgccct tgcggccctt gacggtgacc gggacgatct cgtccttgaa
      481 cgcgccatcg gcctgcgcgg cctgcgcgcg gcgcacgctc tccgcggaat aggcgtcgag
      541 cgcggcgcgg tcgaaaccgt acttgccgca ggccatgtcg ccgaaaacgc ccatcgcctt
      601 gccgtcgtac ggattggtca ggccgtcgtg cgccatgtgg tcgaggaact cggcgctgcc
      661 gtagcggatg ccggtgcgcg agccgttgag caggtgcggg gcgttggtca tcgattccat
      721 gccgccggcg acgacgatcg tcgccgagcc cgcctggatc aggtcgtgcg cgaacatcac
      781 cgccttcatg ccggaaccac agaccttgtt gaccgtcgtg cagccggccg cggtcgggat
      841 gccggcggcg atcgcggcct ggcgcgccgg ggcctggccg agcccggcgg ggagcacgca
      901 gcccatgatc acctcgtcga cctggtcggc cgcgatgccg gcctgggcga gcgcgccctg
      961 gatggcggcg gcgccgaggg cgggcgtcgg cacgccggtg aactggccga ggaaggagcc
     1021 gatggccgtg cgcttggcgc cggcgatgac gatgtcggac atgcgaaact ccgcgagttg
     1081 ggccggcgcg gggccggaac ctcgcgatta tgcggccgca tgctgcggtg cggcaattga
     1141 ggtccgggcg gggccgcgac catgcgttaa ccgcccctgc ggtatggatc gaagcctcag
     1201 cagcgaagga gcgatcttga gccgatcgac ccagatgtcc gatgcgctgg tgttcttcgg
     1261 cgccaccggc gacctcgcct acaagaagat cttcccggcg ctgcaggcgc tgttccgcga
     1321 ctacagcatc gaactgccga tcatcggcgt ggcgcgcggg tcgggcggcc tggattcgct
     1381 caaggagcgc atgcgcgaca gcctggagca tgcgggcggc gtcgatcccc cggtattcga
     1441 ccggctttgc gccaacctgc agtacgtcaa cggcgactac aacgatccgg ccaccttcga
     1501 ccgcctgcgc caggcgctgg agggcaagca gtgcccgctg cattacctcg cgatcccgcc
     1561 ttcgctgttc tgcgaggtaa tcgggcagct ggaccgttcc ggctgcgcgc gcggcgcgcg
     1621 ggtggtggtg gagaagccgt tcggccgcga cctcgagtcc gcgcgcgcgc tcaacgcgac
     1681 cctgcacgag gtcttcccgg agagcgcggt cttccgcatc gaccacttcc tcggcaagga
     1741 accggtgcgc aacctgctgt actaccgctt cgccaacgcc ttcctcgagc cggtctggaa
     1801 ccgcaacttc atcgacaacg tccagatcac catggccgag gacttcggcg tgcaggggcg
     1861 cggcagcttc tacgacagcg tcggcgcgat ccgcgacgtg gtgcagaacc acctgctgca
     1921 ggtggtggcg ctgctggcga tggatgcgcc gatcggcgac gacgcggcgg cgatccatgc
     1981 cgagaagctg cgcatcttcc gcgcgatgcg gccgctgcgg ccggaagacg tggtgcgggg
     2041 gcagttcgac ggctaccgcg acgaagccgg cgtcaagccg gactccagcg tcgagacctt
     2101 cgtcgcgctg aagctgcagg ttgacacctg gcgctgggcc ggcgttccgt tctacgtgcg
     2161 cgcgggcaag tgcctgccga tcaccgcgac cgaagtgatg gtcaacctgc gctgcccccc
     2221 gatgagcatc ttcgaggaag cgcagcccgt gcgttcgaac tatttccgct tccggctcgg
     2281 gccggaaatg gtgatcgcca ccggcgcgca ggtgaagaag ccgggcgagg cgatgcgtgg
     2341 cgacgaggtc gagctggtcg cgcggcacct gacgctgcgc ggcgcgccgc cctacgagcg
     2401 cctgctcggc gatgcgcttc gcggcgactc ctcgctcttc acccgcgacg cggcggtgga
     2461 ggcggcctgg cgcgtggtcg atccggtgct cgacctgccg gggccgatcg gggcctacgc
     2521 cccggggacg tgggggccgg cggacgcgcg gagcgtgctc gccggcgacg acggctggca
     2581 cgatccggtc gccgaggtgg tggcgccatg ctgatgtccg acgccgccgg cgaggtcgcg
     2641 ggaaacgtgg ttttcctgct cgatgtcgac aacacgctgc tggacaacga tcgtttttcc
     2701 gcagacctcg acgccgcgct ggtgggcgcg ctcggcgagg ccggccgcgt gcgctaccgc
     2761 gccgcctacg aggcgctgcg cgacgcccac ggctatgccg attaccccgg cgcactgcag
     2821 gcgctgcgcg gggaccggct ggtcgacgac gcggcactgc tgcagctcgg cgacttcctg
     2881 ctcgactacc cgttcggcga gcgcgtgtac ccgggcagcc atgcagcgct ggcgcacgtg
     2941 gccacgctcg gcgtgccggt gatcctctcc gacggcgacc tcgtgttcca gccgcgcaag
     3001 atccgccgct ccgggctgtg ggacgcggtg cagggccgcg tgctgctcag cgtgcacaag
     3061 gagcgcatgc tcgacgcggt acaacaggcc tatccggcgc ggcactacgt cgtggtggac
     3121 gacaagccga aggtgctgca ggcgatcaag gaaaacctcg gcgcgcgcgt gaccacggtg
     3181 ttcgtgcacc agggccacta cgcgcgcgaa gccgacctcg agcacctgca gccacccgac
     3241 ctcagcctcg cccacatcgg cgaactggtc gggctggaca ccggcaagga cgtcctcctg
     3301 caccgctcgc ttgcgctggt ccccgaactt tcctccacgg cgatgccatg aatcccaacc
     3361 tgcaacagct gcgcgcgctc ggccagagcc tgtggctgga caacatcacc cgcgcgatgc
     3421 tcgacgacgg caccctcgaa cggcgcatcg ccgaatgggg cctcaccggc ctgacttcga
     3481 acccgagcat cttcgacgag gccttttccg gcggcgacgc ctacgacgcc ggcatccgcg
     3541 agcaggccgc cgcaggcaag tccggcgagg cgctgttcat cgaactcgcg ctgcaggacc
     3601 tgcgccgcgc cgccgacctg ttccgtcccg cccacgaggc gagccagggc gtcgacggct
     3661 gggtgtcgat ggagctgtcc ccgctgctcg cgagcgacac cgccggcagc gtcgccgcgg
     3721 cgcaacgcat ccacgcccag gccgggcgcg acaacctgtt cgtcaagatc cccggcacgc
     3781 cggagggcgt tcccgcgatc gaggaatcga tcttcaacgg cgtgccgatc aacgtgaccc
     3841 tgttgttctc cgccgggcag taccgcgccg cggccgaggc ctacatgcgc ggcatcgagc
     3901 gccggctgga ggcggggagg ccgccgcggg tcgcctcggt cgcctcgctg ttcgtcagcc
     3961 gctgggacaa ggcggtggcc gacagggcgc cggaagaatt gcgcaaccgg ctcgggatcg
     4021 cggtcgggca gaagacgtac cgcgcctatc gcgagcttct cggctcggcg cgctggcgcc
     4081 gcctggaagc cgcgggcgcg ctgccgcagc gcctgctgtg ggcgagcacc agcaccaagg
     4141 acccggacgc cccggacacg ctgtacgccg ccgcgctggc cgcgccggac accatcgaca
     4201 cgctgcccga caagacgctc gccgccttcg ccgaccacgg cagggtccag agccagctcg
     4261 gcgaggacga cggcagcgcg acgctggcgc ggttcgccga cgccggcatc gacgtcgacg
     4321 cgctcggcgg gcagttgcag caggagggcg ccgccgcctt cgtgaaatcg tggaagcacc
     4381 tgctcgacgg catcggggcg aaggccgcgg tgctgcaggg caaggcatga aggacgcgat
     4441 gcgcatgcag gatccgatgc cttccgcgtc gatgccgctc accagccgcc cgcagtggca
     4501 ggcgctgcgg gagcatgcgg ccgccaacgc cggccggacg ctgcgcgacc tgttcgcccg
     4561 ggacccgcgc cgcggcgaac gcctgtgcgc ggagggcgcc ggcctct
//
LOCUS       DATIQC010000194         4491 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_613650, whole genome shotgun sequence.
ACCESSION   DATIQC010000194 DATIQC010000000
VERSION     DATIQC010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4491
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613650"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..886)
                     /gene="coaBC"
                     /locus_tag="VLM17_04040"
                     /pseudo
     CDS             complement(1..886)
                     /gene="coaBC"
                     /locus_tag="VLM17_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007964144.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
     gene            1050..1724
                     /gene="radC"
                     /locus_tag="VLM17_04045"
     CDS             1050..1724
                     /gene="radC"
                     /locus_tag="VLM17_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HSR64763.1"
                     /translation="MHIRDWPASERPREKLLLRGAAVLSDAELLALFLGSGLRGEDAV
                     ATARGLLASHGPLRALLERSPAELAGLPGLGPARAAQLAAALELCNRYLAAGLERGEA
                     LTDPAAAGRYFAQRLRGHPHEVFAALFLDARHRALAFEELFRGTIDGAEVHPREVVRR
                     ALAHNAAAVIVGHNHPSGSAEPSAADRAVTVRLRQSLALVDIRLLDHFVVGDGAPESL
                     AARGWV"
     gene            1866..3563
                     /gene="argS"
                     /locus_tag="VLM17_04050"
     CDS             1866..3563
                     /gene="argS"
                     /locus_tag="VLM17_04050"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HSR64764.1"
                     /translation="MKAQLRALVDQGIAALRAAGTLPADAATPDFVIERPKDRSHGDF
                     STNAAMLLAKAAKSNPRAIAQALLPLVQAADTAGLLAGIEIAGPGFLNFRLAPAAWQR
                     QLREIHALGPEYGRNGSGNGHRAGVEYVSANPTGPLHVGHGRAAVIGDCIARVLAANG
                     WDVVREFYYNDAGVQIENLAKSVQARAQGRKPGDADWPADAYNGEYIADVARAYLDGD
                     SVEVEGHVVTGAKDPRDLDAIRRFAVAYLRREQNADLAAYGIAFDVYFLESSLYADDK
                     VEETVRELVAHGHTYEEGGALWLRTTDFGDDKDRVMRKSDGTYTYFVPDVAYHRSKWQ
                     RGYERAITELGADHHGSLARVRAGLQALDAGIPPGYPEYVLHQMVTVMRGGEEVKLSK
                     RAGSYLTLRDLVDEAGRDATRWFLLARKPDSQLTFDIDLARSQSLDNPVYYVQLSHAR
                     TCGLFRQARERGVAFDLDNGLARVPDLADAPTRNLLTELSRWPEVVAAAGVQLEPHQV
                     TAYLHELAQAFQSYYNEHQFLVDDAAVRDARLALAQATRQVLANGLGLIGVTAPEAM"
     gene            3564..4346
                     /locus_tag="VLM17_04055"
     CDS             3564..4346
                     /locus_tag="VLM17_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014091287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSR64765.1"
                     /translation="MAAKRGKAQARRNGRSGGGEHGLPLWGWLVLAGVLVAVGVLVAP
                     KLMPGKGGDGFFRPAPNPDAQPAAVADDEAVVDDDADGTAKKPEADKPKGQTQYDFYK
                     LLPGNEVPMSDAEVAATARAEAARGAAPQPEPGDTGDADDVADAPAAPQPASATPRAE
                     AATPAGNDAAANAKDAAAAPRANDTPYLLQAGAFGASGDAEALKAKIALLGLGARVES
                     AQIGGRTVYRVRMGPYGSASELADAKRKLAAGGLPALAIRAK"
BASE COUNT          633 a         1697 c         1606 g          555 t
ORIGIN      
        1 ttcttgatct tctcgggcga gaccacgcgc ggcgtgtagt cggcgatggc cgcggcgccg
       61 atgtacacat cggccggcag cgcgcccagc acggcctcgc gcatctgcgc ggcgctgcgc
      121 acgtccaccc gcttcaggcc cgcgggcgtg gccagtgcca ccgggccggc aaccagcacc
      181 acctccgcgc cgcggcgggc ggcggcggcg gcgatcgcga agcccatctt gccgctgctg
      241 cggttgccga tgaagcggac cgggtcgatg tcctcgaagg tcggccccgc gctgaccagg
      301 agcctgcggc cggcgagggt tgccgtcatc gcgccgccca cgactgggcc agcgcctgca
      361 cgatcgcgtc gggttcgcgc agccggcccg gaccgaattc gccgcaggcc tgcgcgccgt
      421 cgtcggggcc gatcacctgc acgccgcgcg cgaccagcgc cgccacgttc gcctgggtcg
      481 ccgcatgcag ccacatgcgg tggttcatcg ccggcgcgat cgcgatcggc gcggtggtgg
      541 ccaggcacag cgtgctcacg aggtcgtcgg cgaacccgtg ggcgagcttc gcgatcgtgt
      601 tggcggtggc cggcgcgacc accacctgct cggcccagcg cgccagttcg atgtgcccca
      661 tcgccgcttc ggcggcctcg tcccacagcg aatgccgcac cggccgcccg gacaccgcct
      721 ggaagctggg cgcgccgacg aagcgcagcg cattcccggt catcgccacc tgcacctcgg
      781 cgccggcctc gcgcagccgc cgcaccagtt ccaccgcctt gtaggcggcg atgccgccgc
      841 atgcgcacag cagcacgcgg cggtcgaggc gggcggggcc gtccatgcgg gtcgggaaat
      901 tcctacggcg gaagtggcgg ttagcttacc cgacggcggc gcgcgcgctg atcgtggcgg
      961 cagcggggtt tcgcggagag tggcggggtc ggcaggcgcg ggatcgcgcg agcgcgccgg
     1021 ctgcgatcca cgagccaccc gggtttccca tgcacatccg cgactggccc gccagcgaac
     1081 gtccccgcga gaagctgctc ctgcgcggcg ccgcggtgct gtcggatgcg gaactgctcg
     1141 cgctgttcct cggctccggc ctgcgcgggg aggatgcggt cgccaccgcg cgcggcctcc
     1201 tcgccagcca cggcccgctg cgcgcgctgc tcgagcgcag cccggccgag ctcgccggcc
     1261 tgcccggcct cggtccggcg cgcgccgcgc agctggcggc cgcgctggag ctgtgcaacc
     1321 gctacctcgc cgccggcctc gagcgtggcg aggcgctgac cgatcccgcc gccgccggcc
     1381 gctatttcgc gcagcgcctg cgtggccacc cgcacgaagt gttcgccgcg ctgttcctcg
     1441 acgcccgcca ccgcgcgctc gccttcgagg aactgttccg cggcaccatc gacggggccg
     1501 aggtgcatcc gcgcgaagtg gtgcggcgcg cgttggcgca caacgccgcc gcggtgatcg
     1561 tcggccacaa ccatccgagc ggcagcgccg agccgagcgc cgccgaccgg gcggtgaccg
     1621 tgcgcctgag gcagagcctg gcgctggtcg acatccgcct gctcgaccat ttcgtggtcg
     1681 gcgacggcgc cccggagtcg ctggcggcgc gcggctgggt gtgagccggc cgccgggcgg
     1741 ttcgcgaccg gccgcaaaac cgggaagcac gtcgcgcgcc atgccccgga acgacgacgg
     1801 ggaacggacg cgtccgcgac cgcccgttac aatgccgctc cgctgaacca cccgcagaat
     1861 cccgcgtgaa agcccagctc cgcgccctgg tcgaccaggg catcgccgcc ctgcgcgccg
     1921 ccggcaccct cccggccgat gccgccacgc ccgatttcgt gatcgagcgc cccaaggacc
     1981 gcagccacgg cgacttttcc accaacgccg cgatgctgct ggcgaaggcg gcgaagtcca
     2041 acccgcgcgc gatcgcgcag gcgctgctgc cgctggtcca ggccgccgac accgccggcc
     2101 tgctcgccgg catcgagatc gccggccccg gcttcctcaa cttccgcctc gcgccggccg
     2161 cgtggcagcg ccagttgcgc gagatccacg cgctggggcc cgaatacggc cgcaacgggt
     2221 cgggcaacgg ccatcgcgcc ggcgtcgaat acgtgtccgc caatccgacc ggcccgctgc
     2281 acgtcggcca cggccgcgcc gcggtgatcg gcgactgcat cgcgcgcgtg ctggccgcca
     2341 acggctggga cgtggtgcgc gagttctact acaacgacgc cggcgtgcag atcgagaacc
     2401 tggcgaagtc ggtgcaggcg cgcgcccagg gccgcaagcc cggcgacgcc gactggccgg
     2461 cggacgccta caacggcgag tacatcgccg acgtcgcccg ggcctacctc gacggcgaca
     2521 gcgtcgaggt cgaaggccac gtggtgaccg gcgcgaagga cccgcgcgac ctcgacgcga
     2581 tccgccgctt cgccgtcgcc tacctgcgcc gcgaacagaa cgccgacctc gccgcctacg
     2641 gcatcgcctt cgacgtgtat ttcctcgagt cctcgctgta cgccgacgac aaggtcgagg
     2701 agaccgtgcg cgagctggtc gcccacggcc atacctacga ggaaggcggc gcgctgtggc
     2761 tgcgcaccac cgacttcggc gacgacaagg accgcgtgat gcgcaagtcc gacggcacgt
     2821 acacctattt cgtgccggac gtcgcctacc accggtcgaa gtggcagcgc ggctacgagc
     2881 gcgcgatcac cgaactcggc gccgaccacc acggttcgct ggcgcgggtg cgtgccggcc
     2941 tgcaggcgct cgacgccggc atcccgccgg gctatcccga gtacgtgctg caccagatgg
     3001 tgacggtgat gcgcggcggc gaggaagtga agctgtccaa gcgcgcgggc agctacctca
     3061 ccctgcgcga cctggtcgac gaagcggggc gcgacgcgac gcgctggttc ctgctcgcgc
     3121 gcaagccgga ctcgcagctc accttcgaca tcgacctcgc gcgcagccag tcgctcgaca
     3181 acccggtcta ctacgtgcag ctctcgcacg cgcgcacctg cggcctgttc cgccaggcgc
     3241 gcgagcgcgg cgtcgccttc gacctcgaca acggcctggc ccgggtgccg gacctcgccg
     3301 acgcgccgac gcgcaacctg ctcaccgaac tgtcgcgctg gccggaggtg gtggctgccg
     3361 ccggcgtgca gctcgagccg caccaggtca ccgcctacct gcacgagctg gcgcaggcgt
     3421 tccagtccta ttacaacgag caccagttcc tggtcgacga cgccgccgtg cgcgatgcgc
     3481 gcctggcgct ggcgcaggcg acgcggcagg tgctggcgaa cgggctcggc ttgatcggcg
     3541 tgaccgcgcc ggaggcgatg taagtggcgg caaaacgggg gaaggcgcag gcgcgccgca
     3601 acggacgcag cggcggcggc gaacacggcc tgccgttgtg gggctggctg gtgctggcgg
     3661 gcgtgctcgt cgccgtcggc gtgctggtcg cgccgaaact gatgcctggc aagggcggcg
     3721 acggcttctt ccgtcccgcg ccgaatcccg acgcgcaacc cgcagcggtg gccgacgacg
     3781 aagcggtggt cgacgacgac gccgacggca cggcgaagaa acccgaggcc gacaagccga
     3841 aggggcagac ccaatacgac ttctacaagc tgctgcccgg caacgaagtg ccgatgagcg
     3901 atgcggaagt ggccgccacc gcgcgcgcgg aagccgcgcg cggcgccgcg cctcagccgg
     3961 agccgggcga caccggcgat gccgacgacg tggccgacgc gccggcggcg ccgcagccgg
     4021 cgtccgcgac gccgcgcgcg gaagccgcca cgccggccgg caacgacgcg gcggccaacg
     4081 cgaaggatgc cgccgccgcg ccgcgtgcca acgacacgcc ctacctgctc caggccgggg
     4141 cattcggcgc atccggcgac gccgaagcgc tgaaggcgaa gatcgcgttg ctcggcctcg
     4201 gtgcgcgggt ggaatccgcg cagatcggcg gccggaccgt ctaccgcgtg cgcatggggc
     4261 cctacggcag cgcgtccgaa ctggccgatg ccaagcgcaa gctggccgcc gggggcttgc
     4321 cagcgctggc gatccgggca aagtaggcgc ggccgcattc accgcgcggc gaccgcccca
     4381 ccggcaacgt cgcgaggatc catgccgtat tccctgaaac tggatgaagc ccgcgggctg
     4441 ctcgacctgc gttacaccgg cgtggtgtcg gtcgcgcagc gcttcgaggc g
//
LOCUS       DATIQC010000195         4494 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_578639, whole genome shotgun sequence.
ACCESSION   DATIQC010000195 DATIQC010000000
VERSION     DATIQC010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578639"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..1031)
                     /gene="truB"
                     /locus_tag="VLM17_04060"
     CDS             complement(72..1031)
                     /gene="truB"
                     /locus_tag="VLM17_04060"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019182693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HSR64766.1"
                     /translation="MAAKTNFRKLDGILLLDKPRGLSSNQALQRVRHLFRADKAGHTG
                     SLDPLATGLLPVCFGEATKIAGGLLGARKAYDTVARLGIVTDTDDADGQPLRERPVPE
                     LTVSDIDRAPQRLTGRIRQRPPIYSALKRGGEPLYAKARRGEVVEVDEREVDVHAFEL
                     RSAADLLDGNAPLLRLHVECGSGTYVRSLVRDLGELLGCGAHVEELRRLWVDPFREPR
                     MWTLEALQALAGRGERGLDACLLPIETGMASWPQVAVNAAQARRLGQGQAVAGAFTPA
                     GSVAVMDEAGRALGLGLVEGGALRPQRWFAWACEQPARAVARP"
     gene            complement(1187..1558)
                     /gene="rbfA"
                     /locus_tag="VLM17_04065"
     CDS             complement(1187..1558)
                     /gene="rbfA"
                     /locus_tag="VLM17_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009590752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HSR64767.1"
                     /translation="MPQKSFHRTDRVSAQLRRELGRLVHEAVREHGLPSASVSDVEVT
                     RDMAHAKVFVTALQPERADEAVRGLKGVAREIRFELARAVKLRHVPELHFAYDDSVDR
                     GERIEHLLRDLPGRQDDDATP"
     gene            complement(1578..4172)
                     /gene="infB"
                     /locus_tag="VLM17_04070"
     CDS             complement(1578..4172)
                     /gene="infB"
                     /locus_tag="VLM17_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HSR64768.1"
                     /translation="MSQQTTIRKLAELVNTPVEKLLEQLSEAGMRFDGPDQVVTSIEK
                     MKLLGFLKRSHGKAETAAAEVATPKKITLSRSRKQEITVGGGKNRNTVDVVVRKKVTL
                     VKPSEAAAGGAAPEDDERAEILRKLEESRQRNLTEQQRLAEDDRRRAEEAERKRREDE
                     ATRLEAERQATAAAAAARVEEPGRRAATTHGHGHPSKPAVPARDDKHAPKHKTRGSHA
                     MAAGVEDDDSTARFAGQLHLSASERARRTSSARGKPKPRRQTEQARSGGGAHGFSRPT
                     APIVREIAIGDAITVGDLAQKLALKGGDVVKALFKMGVMATINQIIDHDTAVLVTEEL
                     GHRAARADEGNVEEVLLAHVEEVQGDKAPRPPVVTIMGHVDHGKTSLLDYIRRTKVAS
                     GEAGGITQHIGAYHVETPRGTISFLDTPGHAAFTQMRARGAKLTDIVVLVVAADDGVM
                     PQTVEAVQHAKAAKVPLIVAINKIDKSDADPSRVKNDLLGQDVVAEEFGGDTQMVELS
                     AKTGQGVDTLLDAISLQAEVLELRAVPDGRATGVVIESALDKGRGPVATVLVQQGRLQ
                     KGDYLVCGTQYGRVRALFDETGKQVQDAGPSIPVQVLGLSGVPDAGDDFVVVEDERLA
                     KDVAQQRDAKRRESRLVSQAGNRMEDIMAQMGAAEAQLSLPLIVKADVQGSVQALREA
                     LTGLSNEQIRINVIGSGVGGITESDAQLAATSKATIICFNVRADASARKVIDSNGVDL
                     RYFSIIYDVIDQVKQVASGILGVEIREEIIGTAEVRDVFRSSKFGAVAGCMVVEGVVK
                     RSKPIRVLRDNTVIFEGELESLRRFKENVDEVRVNTECGIGVKAYNDVKPGDQIECFE
                     RVEVQRTL"
BASE COUNT          545 a         1605 c         1599 g          745 t
ORIGIN      
        1 ggatgggtgt gctgcgagtg gaactcggaa gccgcgggat tgtagcccgc gggcccttgc
       61 gggacaaggt tttagggccg tgcgaccgcc ctggcgggct gctcgcaggc ccaggcgaac
      121 cagcgctgcg gccgcaatgc gccgccttcg accaggccca ggccgagcgc ccgtccagcc
      181 tcgtccatga ccgccacgct gccggccggc gtgaaggcgc cggccaccgc ctgtccctgc
      241 ccaagccggc gcgcctgcgc cgcgttcacc gcgacctgcg gccaggaggc catcccggtc
      301 tcgatcggca gcaggcaggc gtcgagcccg cgctcgcccc gtccggccag cgcctgcagg
      361 gcctccagcg tccacatgcg cggctcgcgg aaggggtcca cccacagccg gcgcaactcc
      421 tcgacgtgcg cgccgcagcc gagcagctcg cccaggtcgc ggaccaggct gcgcacgtag
      481 gtgccggagc cgcattcaac gtgcaggcgc agcagcggcg cattgccgtc gagcagatcg
      541 gcggccgacc gcagttcgaa tgcgtgcacg tcgacctcgc gctcgtccac ctcgaccacc
      601 tcgccgcgcc gcgccttcgc gtacagcggc tcgccgcccc gcttgagcgc cgagtagatc
      661 ggcgggcgct ggcggatgcg gccggtcagc cgctgcgggg cgcggtcgat gtcggacacc
      721 gtgagctcgg gcaccggccg ctcgcgcagc ggctggccat cggcgtcgtc ggtgtcggtc
      781 acgatgccga ggcgggccac ggtgtcgtag gccttgcgcg caccgagcag gccgccggcg
      841 atcttggtcg cctcgccgaa gcacaccggc agcaggccgg tggcgagcgg gtcgaggctg
      901 ccggtatggc cggccttgtc cgcgcggaac aggtggcgca cccgctgcag cgcctggttg
      961 gagctcaggc cacgcggctt gtcgagcagc aggatgccgt cgagcttgcg gaagttggtc
     1021 ttcgccgcca tgcggtcgcg cgatccccgg ctcgtggccc ggcgcagtgg agttggtggt
     1081 gcgctgcttc gacagccgtc cgaccggccg atgctaatgc cgaacgggcg ccgctgcacg
     1141 gccgcgacac cggccaccgg ccggcgttgc gcgcgccggt cgcgcgtcag ggcgttgcgt
     1201 cgtcgtcctg ccgtcccggc aggtcgcgca gcaggtgctc gatccgctcg ccccgatcga
     1261 ccgaatcgtc gtaggcgaag tgcagctcgg gcacgtgccg cagcttcacg gcgcgcgcca
     1321 gttcgaagcg gatctcgcgg gcgacgccct tcaggccgcg cacggcttcg tccgcgcgct
     1381 cgggctgcag cgcggtgacg aagaccttcg cgtgcgccat gtcgcgggtg acctcgacgt
     1441 cggacacgct cgccgacggc aggccgtgct cgcgcacggc ctcgtggacc agccggccca
     1501 gctcgcggcg gagctgggcg gagacgcggt cggtgcgatg gaaggacttc tgcggcatgg
     1561 ggttcgtgca ggcacgctta gagcgtgcgc tggacctcga cgcgttcgaa gcactcgatc
     1621 tggtcgcccg gcttgacgtc gttgtaggcc ttcacgccga tgccgcactc ggtgttgacg
     1681 cgcacctcgt cgacgttctc cttgaagcgg cgcagcgact ccagctcgcc ttcgaagatg
     1741 acggtgttgt cgcgcagcac gcggatcggc ttgctgcgct tgaccacgcc ctcgacgacc
     1801 atgcagccgg cgaccgcgcc gaacttcgac gagcggaaca cgtcgcggac ctcggcggtg
     1861 ccgatgatct cctcgcggat ctcgacgcct aggatgcccg aggcgacctg cttcacctgg
     1921 tcgatgacgt cgtagatgat cgagaagtag cgcaggtcga cgccgttgct gtcgatcacc
     1981 ttgcgcgccg acgcatcggc acggacgttg aagcagatga tcgtcgcttt cgacgtcgcc
     2041 gccagctggg cgtcggattc ggtgatgccg ccgacgcccg agccgatcac gttgatgcgg
     2101 atctgctcgt tcgacagccc ggtgagggcc tcgcgcagcg cctgcaccga accctgcacg
     2161 tcggccttga cgatcagcgg caggctgagc tgggcttcgg ccgcgcccat ctgcgccatg
     2221 atgtcttcca tgcggttgcc cgcctggctg accaggcgcg actcgcggcg cttggcgtcg
     2281 cgctgctgcg cgacgtcctt ggccaggcgc tcgtcctcga ccacgacgaa gtcgtcgccc
     2341 gcgtccggca cgcccgacag gccgagcacc tgcaccggga tcgacgggcc ggcgtcctgc
     2401 acctgcttgc cggtctcgtc gaacagcgcg cgcacgcggc cgtactgggt gccgcacacc
     2461 aggtagtcgc ccttctgcag gcgaccctgc tgcacgagca ccgtggcgac cgggccgcgg
     2521 cccttgtcga gcgcggattc gatcaccacg ccggtggcgc ggccgtccgg gaccgcgcgc
     2581 agctcgagca cctcggcctg cagcgagatc gcatccagca gcgtgtcgac gccctggccg
     2641 gtcttggccg acagctcgac catctgcgtg tcgccgccga attcctcggc gaccacgtcc
     2701 tggccgagca ggtcgttctt gacgcgcgag ggatccgcgt cggacttgtc gatcttgttg
     2761 atcgccacga tcagcggcac cttcgccgcc ttcgcgtgct ggaccgcctc caccgtctgc
     2821 ggcatcacgc cgtcgtcggc ggcgaccacc agcaccacga tgtcggtgag cttggcgccg
     2881 cgcgcgcgca tctgggtgaa cgcggcgtgg cccggcgtat cgaggaagct gatcgtgccc
     2941 cgcggcgtct cgacgtggta tgcgccgatg tgctgggtga tgccgcccgc ctcgcccgac
     3001 gccaccttgg tgcgccggat gtagtcgagc agcgaggtct tgccgtggtc gacgtggccc
     3061 atgatggtga ccaccggcgg acggggcgcc ttgtcgccct gcacttcctc gacgtgggcg
     3121 agcagcactt cctcgacgtt gccttcgtcg gcgcgcgcgg ccctgtggcc gagctcctcg
     3181 gtgaccagca ccgcggtgtc gtggtcgatg atctggttga tggtcgccat cacgcccatc
     3241 ttgaacagcg ccttcaccac gtcgccgccc ttgagggcca gcttctgcgc gaggtcgccg
     3301 acggtgatgg catcgccgat ggcgatctcg cgcacgatcg gggcggtcgg ccgcgagaag
     3361 ccgtgcgcgc cgccgccgct gcgggcctgt tcggtctgcc gcctgggctt gggcttgcca
     3421 cgcgcgctgc tggtgcggcg cgcgcgctcg gaggccgaca ggtgcagctg cccggcgaag
     3481 cgcgcggtgc tgtcgtcgtc ctcgacgccc gccgccatcg cgtgcgaacc gcgggtcttg
     3541 tgcttgggcg cgtgcttgtc gtcgcgcgcg ggcacggccg gcttgctcgg gtggccatgg
     3601 ccatgggtgg tcgccgcgcg acgtccgggc tcctccacgc gcgccgccgc ggcggcggcc
     3661 gtcgcctggc gctcggcctc caggcgcgtc gcctcgtcct cgcggcgctt gcgctcggcc
     3721 tcctcggcgc gacgacggtc gtcctcggcc aggcgctgct gttcggtcag gttgcgctgg
     3781 cgcgactcct cgagcttgcg caggatctcc gcgcgctcgt cgtcctcggg cgcggcgccg
     3841 ccggccgccg cctcgctcgg cttgaccagc gtgaccttct tgcgcaccac cacgtcgacg
     3901 gtgttgcggt tcttgccgcc accgacggtg atttcctgct tgcggctgcg gctgagggtg
     3961 atcttcttcg gcgtggcgac ctcggcggcg gccgtttcgg ccttgccgtg cgaacgcttg
     4021 aggaagccca gcagcttcat cttctcgatg ctggtgacga cctggtcggg accgtcgaag
     4081 cgcatgcccg cttcggacag ctgctccagc agtttctcga ccggcgtgtt caccagttcg
     4141 gccagcttgc ggatggtggt ctgttgcgac attcggtttc cgtgtcctgg ggcctggccg
     4201 tggccgggcg cgtgaagcag ggcgctgtaa agcaggcgat tctactgcgg agggggggcg
     4261 cggcggtctg acggggcgaa ctggctacgt tgcagtgcaa aaaagcggcg gtggagctac
     4321 ttgcagtcgc ctcgaaacgg tcgtcgtgcc atccatggcc ggcgttcgcc agcggagccg
     4381 atgccgacag ggcatcggtt acgcgcgtgg ctcacccctc ccgttccagc cgggcgattt
     4441 cctcggcgcg cgcggccagg atcagcgcgg cggcgcgctc ctcgtccagg ccgt
//
LOCUS       DATIQC010000196         2856 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_331041, whole genome shotgun sequence.
ACCESSION   DATIQC010000196 DATIQC010000000
VERSION     DATIQC010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331041"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..1331)
                     /locus_tag="VLM17_04075"
     CDS             complement(186..1331)
                     /locus_tag="VLM17_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014088871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PA0069 family radical SAM protein"
                     /protein_id="HSR64769.1"
                     /translation="MEDALHDWPEPPEAAQDARTARAPIKGRGAASRIAGRFEKTLAR
                     GEDDGWGSVYADAFDEDGEPRAAAATTVTEERARSVVSRNDSPDVGFDQSVNPYRGCE
                     HGCVYCFARPSHAYLDLSPGLDFETRLYAKTNLAGRLREELAKPGYVPSPIALGINTD
                     GYQPIERRYRLTRQALEVLAECRHPVSFVTKSALIERDLDLLAPMARDGLVSVHFSVT
                     TLDNRLAARMEPRATAPHGKLRAMRALADAGVPVGVMVAPVVPALTDHELERILEAAR
                     DHGARSAGYVLLRLPHELKQVWREWLELHYPERAAHVMSLVRQMRGGKDYDSRFGVRS
                     RGEGPFAQLLAQRFAKAHARLGFGRLPPLDTAKFVAPRKPSPQGELF"
     gene            1388..2833
                     /gene="cls"
                     /locus_tag="VLM17_04080"
     CDS             1388..2833
                     /gene="cls"
                     /locus_tag="VLM17_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008808 - cardiolipin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0032049 - cardiolipin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HSR64770.1"
                     /translation="MLDALYGLAQQLDHLPHLRLVLVLAWLAYLLLLGGWIVLQKRAP
                     VATLSWLLGLAALPVLGFVVYYVFGPQRIRRQRLRRARSRVALPAGDEHARTGDRAEL
                     ARLAQATTGLPASTAHEVRLLVDGAATYAALLEAIAQARHHVHLEYYIFAPDRTGTAI
                     RDALVARARAGVAVRLLLDAVGSSACPRRFFDPLRAAGGELAWFHPMRFGRFWQRPWV
                     NLRSHRKIVVVDGAVAFTGGINVTDEENEALRADAYRDLHLRLTGDIVRSLQLVFVED
                     WAYATGERAFLSSVVAALPPHAPGPVPVQALTSGPDSSWEAIHRIHVAAIHAAHRRVW
                     LVTPYFVPSEAALFALTSAALAGLDVRVVVPRRSDSRFVTLAARSWFDDLLAAGIKVY
                     QYGPRMLHTKALLVDDNLAIVGSANFDHRSFSLNFEVSMLFDDVAVAGALAQLIEGEF
                     AHAPRVHEGRPRSLWRARLPEALARLLAPLL"
BASE COUNT          335 a         1060 c         1029 g          432 t
ORIGIN      
        1 ggcagtaccg cttcggcgat ttcctgcgcg tgggcctgcc gctgacgctg ctgatcgcga
       61 tcgtcagcgc gtggatggcg cgctggctgt ggctcggcgg cccgctgctg ccggcgttcg
      121 gctcctagga tcgaacgccg aaacggcgcc cgccagccgg tgcgcccgcc cccgcggccg
      181 tcggctcaga acaactcgcc ctgcggcgag ggcttgcgcg gggcgacgaa tttcgccgtg
      241 tccagcggcg gcaggcggcc gaagcccagc cgcgcgtgcg ccttggcgaa gcgctgggcc
      301 agcagctgcg cgaacggccc ttcgccgcgc gagcgcaccc cgaagcggct gtcgtagtcc
      361 ttgccgccgc gcatctgccg gaccaggctc atcacgtgcg cggcgcgctc gggatagtgc
      421 agctccagcc attcgcgcca gacctgcttg agttcgtgcg gcagccgcag cagcacgtag
      481 ccggcgctgc gcgcgccgtg gtcgcgcgcg gcctcgagga tgcgctcgag ttcgtggtcg
      541 gtcagcgccg gcaccaccgg cgcgaccatc accccgaccg gcacgccggc gtcggcgagc
      601 gcgcgcatcg cccgcagctt gccgtgcggc gcggtcgcgc gcggctccat gcgcgcggcg
      661 aggcggttgt cgagggtggt gaccgaaaaa tgcacgctca ccagcccgtc gcgcgccatc
      721 ggcgcgagca ggtcgaggtc gcgctcgatc agcgcgctct tggtgacgaa gctgaccggg
      781 tgcctgcatt cggccagcac ctccagggcc tgccgggtga ggcggtagcg gcgctcgatc
      841 ggctggtagc cgtcggtgtt gatgccgagc gcgatcggcg acggcacgta gccgggtttc
      901 gccagctcct cgcgcaggcg cccggcgagg ttggtcttgg cgtagagcct ggtctcgaag
      961 tcgagccccg gagacaggtc gaggtaggcg tgcgacggcc gcgcgaaaca gtagacgcag
     1021 ccatgctcgc agccgcggta cgggttgacc gactggtcga agcccacgtc cggcgagtcg
     1081 ttgcggctga ccaccgagcg cgcgcgttcc tcggtgaccg tggtggccgc cgccgcccgt
     1141 ggttcgccgt cctcgtcgaa cgcgtccgcg tagaccgacc cccagccgtc gtcctcgccg
     1201 cgcgccagcg ttttctcgaa gcggccggcg atgcgcgacg cggccccgcg ccccttgatc
     1261 ggcgcgcgcg cggtgcgcgc gtcctgcgcg gcctccggcg gttcgggcca atcgtgaagt
     1321 gcatcttcca tccatgcagc ctacgcttgc gcggtcgcag gccccgcgac aggtagatga
     1381 acccttcatg ctggatgccc tttacggcct cgcgcagcag ctggaccacc tgccgcacct
     1441 gcgcctggtg ctggtgctcg cctggctcgc ctacctgctg ctgctcggcg gctggatcgt
     1501 gctgcagaag cgcgcgccgg tggcgacgct cagctggctg ctcggcctgg ccgcgctgcc
     1561 ggtgctgggc ttcgtcgtct actacgtgtt cgggccgcaa cggatccggc gccagcgcct
     1621 gcgccgcgcg cgcagccggg tcgcgttgcc ggccggcgac gagcatgcgc gcaccggcga
     1681 tcgcgccgaa ctcgcgcgcc tggcccaggc caccaccggc ctgccggcca gcaccgcgca
     1741 cgaggtgcgc ctgctggtcg atggcgcggc gacctacgcc gcgctgctgg aggcgatcgc
     1801 gcaggcgcgc caccacgtgc acctcgagta ctacatcttc gcgcccgacc gcacgggcac
     1861 cgcgatccgc gacgcgctgg tcgcgcgtgc gcgcgccggg gtggcggtcc ggctgctgct
     1921 ggatgcggtc ggctcctcgg cctgcccgcg ccgcttcttc gacccgctcc gcgccgccgg
     1981 cggggaactc gcctggttcc acccgatgcg cttcggccgc ttctggcagc ggccgtgggt
     2041 gaacctgcgc tcgcaccgca agatcgtggt ggtcgacggc gcggtcgcct tcaccggcgg
     2101 catcaacgtc accgacgagg agaacgaggc gctgcgcgcc gacgcctacc gcgacctgca
     2161 cctgcgcctg accggcgaca tcgtgcgctc gctgcagctg gtgttcgtcg aggactgggc
     2221 ctacgccacc ggcgagcgcg cgttcctgtc ctcggtggtc gcggcgctgc cgccgcacgc
     2281 gccagggccg gtgccggtgc aggcactcac ctcgggcccg gactcgtcgt gggaagcgat
     2341 ccaccgcatc cacgtcgccg cgatccacgc cgcgcaccgc cgggtatggc tggtgacgcc
     2401 gtacttcgtg ccgagcgagg ccgcgctgtt cgcgctgacc tcggccgcgc tggccggcct
     2461 cgacgtgcgg gtggtggtgc cgcggcgcag cgattcgcgc ttcgtgaccc tggccgcgcg
     2521 ctcgtggttc gacgacctgc tcgccgcggg catcaaggtc taccagtacg gcccgcgcat
     2581 gctgcacacc aaggcgttgc tggtcgacga caacctcgcg atcgtcggca gcgccaactt
     2641 cgaccatcgc agcttcagcc tcaacttcga ggtgtcgatg ctgttcgacg acgtcgcggt
     2701 cgccggcgcg ctggcgcagc tgatcgaagg cgaattcgcg cacgccccgc gcgtgcacga
     2761 gggccgccct cgctcgctgt ggcgggcgcg cctgccggaa gcgctggcgc ggctgctggc
     2821 gccgctgctc tgaagcaggc ccgggcaccg ggtcga
//
LOCUS       DATIQC010000197         1722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_331109, whole genome shotgun sequence.
ACCESSION   DATIQC010000197 DATIQC010000000
VERSION     DATIQC010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1722
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331109"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..366)
                     /locus_tag="VLM17_04085"
     CDS             complement(76..366)
                     /locus_tag="VLM17_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64771.1"
                     /translation="MRRILVVPLAALLTCLSLGAMAATPPMPVANTAPAAGAAKAPAP
                     PAATGPAAAAAPAAKVAATRCRDAKGKFVSCAARPAKKQCRDAKGKFIACAK"
     gene            complement(451..>1722)
                     /locus_tag="VLM17_04090"
     CDS             complement(451..>1722)
                     /locus_tag="VLM17_04090"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HSR64772.1"
                     /translation="ATVPARAAGPALRGRRAAEVCVVGGGFAGLNTALGLAERGVRDV
                     VLLEAEQVGFGASGRNGGFVFGGFSRGEEALLRELGEARARALYAGSIDAVERIRHRI
                     DEHAIDCERVEAGVVWANWFRDPRVLRERQELLARHYGVDWQWLPQAELRERIRTTRY
                     HDGLYEPRAFHFHPLKYARGLAAVVAGQGVAVHEQSPAIGLERAGGGWRVRTPEGEVA
                     ARSVVLACGGYLARLRRRVDAGVLPIATYVMVTEPLGARLHEVLATGAAVYDTRFAFD
                     YYRPLPDTRLLWGGRISVLDRSPAAVERLLRRDLLKVFPRLDGVRIDYAWSGLMSYAR
                     HQMPQVGEIEPGLWLAQAFGGHGVAPTTFAGELLAAAIAEGDLRWREMADYGLVSAFK
                     PAGFLGAQLGYWWAEARDAWRDRRERSAAGG"
BASE COUNT          254 a          642 c          621 g          205 t
ORIGIN      
        1 cttcgcccac caacaatcaa gaaagcgggg cggccacaag gccgcccctt tccgcatggg
       61 gaaccttccg cgcggctact tcgcgcaggc gatgaacttg cccttggcgt cgcggcactg
      121 cttcttcgcc ggccgggcag cgcaggacac gaacttgccc ttggcatcgc ggcagcgcgt
      181 ggcggcgacc ttggcagccg gcgccgcggc ggcggcgggc ccggtggccg cgggcggggc
      241 tggtgccttg gcagccccgg cggcgggagc ggtgttggcg accggcatgg gcggcgtggc
      301 ggccatggcg ccgaggctga ggcacgtcag cagggcggcg agcggaacga cgaggatgcg
      361 gcgcatcgga ggtctccagg ggatggaacg gcggagacga tgctggcgac cggcaggcaa
      421 cgtgcggatg gcggcaggat tacggcccgt tcatccgccg gccgcggaac gctcgcgacg
      481 atccctccag gcatcgcggg cctccgccca ccagtagccg agctgggcgc cgaggaagcc
      541 ggcgggcttg aacgccgaca cgaggccgta atcggccatt tcgcgccagc gcaggtcgcc
      601 ctcggcgatc gcggccgcga gcagctcgcc ggcgaaggtc gtcggtgcca cgccatgccc
      661 gccgaacgcc tgcgccagcc acaggcccgg ctcgatttcg ccgacctgcg gcatctggtg
      721 ccgggcgtaa ctcatcaggc cggaccaggc gtagtcgatg cgcacgccgt cgagtcgggg
      781 gaagaccttg agcaggtcgc gccgcagcag gcgctcgacc gcagccggag accggtccag
      841 caccgagatc cgcccgcccc acagcagccg ggtgtccggc aagggccggt aatagtcgaa
      901 ggcgaagcgc gtgtcgtaga ccgcggcgcc ggtcgcgagc acttcgtgca ggcgcgcgcc
      961 gagcggctcg gtcaccatca cgtaggtggc gatcggcagc acgcccgcgt cgacgcggcg
     1021 ccgcagccgg gcgaggtagc caccgcaggc gagcacgacg ctgcgcgcgg cgacttcccc
     1081 ttccggcgtt cgcacccgcc agccgcctcc ggcgcgctcg agcccgatcg cgggcgactg
     1141 ctcatgcacg gccacgccct gccccgccac cacggcagcg aggccccgtg cgtatttcag
     1201 cgggtggaaa tggaaggcac gcggctcgta caggccatcg tggtagcggg tggttcggat
     1261 gcgctcgcgc agctcggctt gcggcagcca ctgccagtcg acgccgtaat gccgcgccag
     1321 cagttcctgc cgttcccgca gcacgcgcgg atcgcggaac cagttggccc acaccacccc
     1381 ggcctcgacc cgctcgcagt cgatcgcatg ctcgtcgatg cggtggcgga tgcgctcgac
     1441 cgcatcgatc gacccggcat acagcgcgcg ggcgcgcgcc tcgccgagtt cgcgcagcag
     1501 cgcctcctcc ccgcgcgaga atccaccgaa cacgaagccg ccgttgcgtc ccgacgcgcc
     1561 gaagccgacc tgctcggcct ccagcagcac gacgtcgcgc acgccgcgtt cggccagccc
     1621 gagcgcggtg ttgaggcccg cgaagccgcc acccaccacg cagacctccg ccgcgcgccg
     1681 tccgcgcagc gcgggcccgg ccgcacgcgc ggggacggtt gc
//
LOCUS       DATIQC010000198         7277 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_260714, whole genome shotgun sequence.
ACCESSION   DATIQC010000198 DATIQC010000000
VERSION     DATIQC010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7277
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260714"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1814
                     /locus_tag="VLM17_04095"
     CDS             <1..1814
                     /locus_tag="VLM17_04095"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HSR64773.1"
                     /translation="NMVNRSGCLLGIAWLLAGCVHAPSAATPAMVETAADWRIDSVDL
                     PAPAFAPERVHVHVLLPPGYDAAAARRYPVLYVNDGQDSEAVGLRETLARLHGEGTIR
                     PVVVVAIDMLHDRMGTYGLSDRAAGRSLPGDSKYGPVGARAHDYSEWVARSLVPYIDA
                     RYRTEANPGARAILGWSLGALNAFNLGWQYPEVFGRVGAFSPSFWLAADRSTPAAIQR
                     TRLAQRMVDGAPPRNGARWFFAVGSDEETDDRDGDGVNDAVDDTRDLVEGWNGNDGAS
                     LKGLAQRGYSVDMDWADAPARTDVAYALLAHGQHNQASWARMLPLFLRWAYAEHAPPL
                     QATGSVDSWQDFDSRFVAPRNVDVWLPPGYAEHPHRRYPVVYMHDGQNLFDPKLSYTG
                     IDWGVDEAMTRLIAQGRVRPAIVVGIWNTPLRFQEYMPRKPVATASVPMLEGMPPVPA
                     GSIVSDDYLRFLVEELKPFIDARYRTRPGRADTVVAGSSMGGLVSAYAMAEFPQVFGG
                     AGCVSTHWPAGDGAMVDWLAAHAPDPRTHRFWFDHGTATLDAGYAPFQQRMDAALRAD
                     GYRDGRNLESRVFAGADHSERAWRARVDQALVFLLGP"
     gene            complement(1827..4448)
                     /locus_tag="VLM17_04100"
     CDS             complement(1827..4448)
                     /locus_tag="VLM17_04100"
                     /inference="COORDINATES: protein motif:HMM:NF012356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HSR64774.1"
                     /translation="MGRTSAGTGWTTAGACLALAFSLAAGAAPAAPPARVPSPDWRDQ
                     VIYFAMIDRFDDGDPRNDDQHAGEYDPADGAKFSGGDLAGLARRVGYLRGLGATTLWI
                     TPPVANRWWDPTVNYGGYHGYWAEDFGRVDAHFGTLADYRRLADILHAAGMYLVQDVV
                     VNHTGNFFRYDGGRDPRDPAAHFALVPDARGRTAPTQPPFDRNDPRKPGDRAAAIYHW
                     TPPITDYGDERQRLDFQLADLDDLNTENPAVRDALRASYGMWVREVGVDAFRIDTAAY
                     VPPAFFRDFLYSRDPRHPGIAEVARRAGRQDFLAFGEGFLLDKAYGDSSSKRIDAYMH
                     DAHGRLLPSMLDFPLYGTLGDVFARGRPTAELGWRIADRMRVYARPWLMPTFVDNHDV
                     ERFLAGAGEPALKQALLALMTLPGIPVIYAGTEQGFTGQRDSMFKGGFGSRGADHFDP
                     QAPLYHYLQRAIALRRGDRVFSRGTPTVLREDAAGPGVLAYRMQDGGQRAYVAFNTAD
                     RPALLDNLATGLPAGRVLHGVFAIEGAPADVVVGAGGRVDLVLPPHAGLAWRAIAPSR
                     ARSQSRSRPAVRLDALADERVGGDFVVQGTARGTGQVQVVVDGDLAGARHVPVDARGH
                     WRATVDTGAMADADVAHRVVAWPGPGGAASAARSFHVARPWSVLAEVDDPTGDDHGPR
                     GRYTYPTGLGWNDAHPLDIEHVRVSGAGGALRVEFTMHGLQEAWNPPNGFDHVAFMVY
                     LQVPGMREGASVMPLQNADVPAGLRWNLRLRVDGFSNALFAAAGASATSEGTPVSPAA
                     AIRVDKGRRTIAFTLPASVLGKPASLSGVKLYATTWDMGEGPRPLRAEAGPWAFGGGD
                     GTRDPLVMDDSAVVTLP"
     gene            4690..>7277
                     /locus_tag="VLM17_04105"
     CDS             4690..>7277
                     /locus_tag="VLM17_04105"
                     /inference="COORDINATES: protein motif:HMM:TIGR01782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR64775.1"
                     /translation="MLQLKRNLLSVALASATLMLANAAHAQSAADQASPDQTAAGQAA
                     ADKAKKPEDSAKKLDAIVVHGLRRGIEDAILTKQTSTQIVESVSAEDIGKLPDSSIAE
                     SIARLPGLTAQRERGRATQINIRGLSGDFAGTTLNGREMTTTSENRGVEFDQFPSELL
                     SGVTVYKTPDAALVGQGLSGTVDMHTVRPLSFDKRVITGNYRADQNSVNGGKDYGNRY
                     SATYIDQFLDHTFGVAIGYAHLDSPQPGYQNEAWGYAQGSVPERNPVWVYGGGKIYRF
                     NDDLKRDGLMATLQYKPNQFWESTLDAFFSKFEKTEDKAGIEFGTAWGQGQLQPGYVI
                     NDAGTITDSTWTNVKPVVRMDSNPYTDRLHSIGWNNKFRLTDNWSLNTDLSLSDTKRQ
                     MRYLETYGGLTGNGTTTVRVALDPSGQFNNLTFGSDFSDPNNLQLIDAGNWGQDGYLK
                     DFEIHDRLKAYRVDATRGFDSGAFSSLTFGVNRTDRTKDKSSLEAKLCLVACAGVGDS
                     APFPGSAEAFDFGGLGSLATYNAEDLLNSGIYNLQPKFHPDIANKNWSVHEVVDTFYV
                     QLNLDTTLASMPLRGNFGTQLVRVDQSSVGYDTFAGNAAGTLEQQGTKYNDVLPSMNL
                     SLEFMPDTYLRFAAARQMQRPRMDDMRASFNVDPNVNCNNSGLMWCASGGNPNLRPWL
                     ANAYDLSAEHYFTTELGNKGYFAAAYFYKDLKSYIYTQATPFDFAGYPLPPPESGQIP
                     GVTYPDSTVGLITQPRNGQGGLLAGLELTASMPLDLLWNPLNGFGIQASYSENRTSIH
                     PNGPGTSDPLPGFSKYVSSVTAYYEHNGFSIRLSERKRSSFRGETRGFGADLAYIDYQ
                     PEKVQDA"
BASE COUNT         1132 a         2639 c         2515 g          991 t
ORIGIN      
        1 tgaacatggt caaccgatcc ggctgcctgc tcggcatcgc atggctgctc gccggctgcg
       61 tccacgcgcc gtccgccgcg acgccggcca tggtggaaac cgcggcggac tggcgcatcg
      121 attccgtcga cctgccggcg ccggcgttcg cgcccgaacg ggtacacgtg cacgtcctcc
      181 tgccgcccgg ctacgacgcc gccgcggcgc gccgctatcc ggtgctgtac gtcaacgacg
      241 gccaggacag cgaggcggtc gggctgcgcg agacgctggc gcgcctgcat ggcgagggca
      301 cgatccggcc ggtggtcgtc gtcgcgatcg acatgctgca cgaccgcatg ggcacctacg
      361 ggctgtccga ccgcgccgcg gggcgcagcc tgccgggcga ctcgaaatac ggcccggtcg
      421 gcgcgcgcgc gcacgactac tcggagtggg tcgcccgctc gctggtgccc tacatcgatg
      481 cccgctaccg caccgaggcc aatcccggcg cgcgcgcgat cctcggctgg tcgctgggcg
      541 cgctcaacgc gttcaacctc ggctggcagt atccggaggt gttcggccgg gtcggcgcgt
      601 tctcgccttc gttctggctc gcggccgacc gcagcacgcc ggccgcgatc cagcgcacgc
      661 ggctggcgca gcgcatggtc gacggcgcgc cgccgcgcaa cggcgcgcgc tggttcttcg
      721 cggtcggcag cgacgaggag accgatgacc gcgacggcga cggcgtcaac gacgcggtcg
      781 acgatacccg cgacctggtc gaaggctgga acggcaacga cggcgcgtcg ctgaagggac
      841 tcgcgcagcg tggctattcg gtcgacatgg actgggcgga cgcgccggcg cggaccgacg
      901 tcgcctacgc gctcctcgcg cacggccagc acaaccaggc ctcgtgggcg cgcatgctgc
      961 cgctgttcct gcgctgggcc tatgccgagc acgcgccgcc gctgcaggcg accggtagcg
     1021 tggacagctg gcaggacttc gattcgcgct tcgtcgcgcc gcgcaacgtc gacgtgtggc
     1081 tgccgcccgg ctatgcggag cacccgcacc ggcgctatcc ggtcgtgtac atgcacgacg
     1141 gccagaacct gttcgacccg aagctctcct acaccggcat cgactggggc gtggacgagg
     1201 cgatgacccg gctcatcgcg cagggccggg tacgcccggc gatcgtcgtc ggcatctgga
     1261 acacgccgct gcgcttccag gaatacatgc cgcgcaagcc ggtcgcgacg gcatcggtgc
     1321 cgatgctcga aggcatgccg ccggtgcccg cgggcagcat cgtgtcggac gactacctgc
     1381 gcttcctggt cgaggagctc aagcccttca tcgacgcgcg ctaccgcacg cgcccgggac
     1441 gcgccgacac ggtggtggcc ggctcgagca tgggagggct ggtctccgcc tatgcgatgg
     1501 ccgagtttcc gcaggtgttc ggcggcgccg gctgcgtgtc gacgcactgg ccggcgggcg
     1561 acggtgcgat ggtcgactgg ctggcggcgc atgcgccgga tccgcgcacg caccgcttct
     1621 ggttcgacca cggcacggcg acgctggacg cggggtacgc gccgttccag cagcgcatgg
     1681 acgccgcgct gcgcgccgac ggctaccgcg acgggcgcaa cctcgagagc cgcgtgtttg
     1741 ccggcgccga ccactccgag cgcgcctggc gcgcgcgcgt cgaccaggcg ctggtcttcc
     1801 tgctcgggcc ctgaagcgcg gcgccctcag ggcagggtga ccaccgcgct gtcgtccatc
     1861 accagcggat cgcgcgtgcc gtcgccgccg ccgaacgccc aggggccggc ctccgcccgc
     1921 agcgggcgcg ggccttcgcc catgtcccag gtcgtcgcgt agagcttcac gcccgacagc
     1981 gaggccggct tcccgagcac gctcgccggc agggtgaagg cgatcgtgcg ccggcccttg
     2041 tcgacgcgga tggccgccgc cggcgagacc ggcgtgcctt cgctcgtggc gctcgccccg
     2101 gctgccgcga acagcgcgtt ggagaatccg tcgacgcgca ggcgcaggtt ccagcgcagg
     2161 cccgcgggca cgtccgcgtt ctggagcggc atcacgctgg cgccttcgcg catcccgggc
     2221 acctgcaggt acaccatgaa ggcgacgtgg tcgaagccgt tgggcggatt ccacgcctcc
     2281 tgcagcccgt gcatcgtgaa ctcgacccgc agcgcgccac cggcacccga gacgcgcaca
     2341 tgctcgatgt cgagcggatg cgcgtcgttc cagccgaggc cggtgggata ggtgtagcgg
     2401 ccgcgcgggc cgtgatcgtc cccggtcgga tcgtcgacct cggccagcac ggaccagggc
     2461 cgcgcgacgt ggaagctgcg cgccgcggag gccgcgccac cgggtcccgg ccacgccacc
     2521 acccggtgcg cgacgtcggc gtcggccatc gcgccggtgt cgaccgtggc ccgccagtgt
     2581 ccgcgcgcat ccaccggcac atggcgggcg ccggcgaggt cgccgtcgac caccacctgc
     2641 acctgcccgg tgccgcgcgc cgtgccctgc acgacgaagt cgccgcccac gcgttcgtcg
     2701 gcgagcgcat cgagtcgcac cgcggggcgc gaccgggact gcgaccgcgc ccgcgacggc
     2761 gcgatggccc gccacgccag gccggcgtgc ggcggcagca ccaggtcgac gcgaccgccc
     2821 gcaccgacca cgacatccgc gggcgcgccc tcgatggcga acacgccgtg cagcacgcga
     2881 ccggccggca gcccggtggc gaggttgtcg agcagggcgg ggcggtcggc cgtgttgaag
     2941 gcgacgtagg cgcgctggcc gccgtcctgc atgcggtagg cgagcacgcc gggccccgct
     3001 gcgtcttcgc gcaggacggt gggcgtcccg cgcgaaaaca cccggtcgcc gcgccggagc
     3061 gcgatcgcgc gttgcaggta gtggtacagc ggcgcctgcg ggtcgaagtg gtcggcgcca
     3121 cggctgccga agcccccctt gaacatcgaa tcgcgctgcc cggtgaagcc ctgctcggtg
     3181 ccggcgtaga tgaccgggat gccgggcagc gtcatcagcg ccagcagcgc ctgcttcagc
     3241 gcgggctcgc cggcgccggc gaggaagcgc tcgacgtcgt ggttgtcgac gaaggtcggc
     3301 atcagccagg ggcgcgcgta cacgcgcatg cggtcggcga tccgccagcc gagctccgcc
     3361 gtcgggcggc cgcgcgcgaa cacgtcgccg agcgtcccgt acagcgggaa atcgagcatc
     3421 gacggcagca gccggccgtg cgcatcgtgc atgtaggcgt cgatgcgctt cgagctgctg
     3481 tcgccgtagg ccttgtcgag caggaagccc tcgccgaacg cgaggaagtc ctggcggccg
     3541 gcgcggcgcg cgacctcggc gatgccgggg tgccgcgggt cgcgcgaata gaggaagtcg
     3601 cggaagaagg ccggcggcac gtaggccgcc gtgtcgatgc ggaaggcgtc cacgcccacc
     3661 tcgcgcaccc acatgccgta gctggcgcgc agggcgtcgc gcaccgccgg attctcggta
     3721 ttgaggtcgt cgaggtcggc gagctggaag tccaggcgct ggcgctcgtc gccgtagtcg
     3781 gtgatcggcg gcgtccagtg gtagatcgcc gccgcgcggt cgcccggctt gcgcggatcg
     3841 ttgcggtcga acggcggctg cgtcggcgcg gtgcggccgc gcgcgtcggg caccagggcg
     3901 aagtgcgcgg ccgggtcgcg cggatcccgg ccgccgtcgt agcggaagaa gttgccggtg
     3961 tggttcacca ccacgtcctg caccaggtac atgccggcgg cgtgcaggat gtcggcgagg
     4021 cggcggtagt cggcgagggt gccgaagtgc gcatcgaccc ggccgaagtc ctcggcccag
     4081 tagccgtggt agccgccgta gttcacggtc gggtcccacc agcggttggc gaccggcggg
     4141 gtgatccaca gcgtggtcgc gcccagcccg cggaggtagc cgacgcggcg ggcgaggccg
     4201 gcgagatcgc cgccgctgaa tttcgcgccg tcggcggggt cgtactcgcc ggcatgctgg
     4261 tcgtcgttgc gcgggtcgcc gtcgtcgaag cggtcgatca tcgcgaagta gatgacctgg
     4321 tcgcgccagt cgggcgaggg cacccgtgcc ggcggcgcgg ccggggcggc gcccgcggcg
     4381 aggctgaacg ccagcgccag gcaggcgcct gccgtcgtcc atccggttcc cgcagacgtc
     4441 cttcccatcg atcgccccgg ctttcctgaa tgcatgcggc ccgccgccac tattccacgc
     4501 caacgtgacg caggtcagcg tgggcgcggg ccgggctcat gaatacgtat gcaaaacgat
     4561 ttgtgcacga attgctgcga ataccatcac cgacatgccg gcgccctgct ccggcaggca
     4621 gcacgtggcg agcgccggca acgaaaaggc cgcggccgcc gtagacatct ttcgacctag
     4681 gggaagggaa tgttgcaact caagcgcaac ctgctgagcg tcgcgctggc ctcggccacg
     4741 ctcatgctgg ccaacgccgc gcacgcgcag agcgccgccg accaggcgtc gccggaccag
     4801 acggccgccg gccaggccgc cgccgacaag gccaagaagc ccgaggattc cgccaagaag
     4861 ctcgacgcga tcgtggtgca cggcctgcgc cgcggcatcg aggacgcgat cctgaccaag
     4921 cagacctcga cccagatcgt cgagtcggtg tccgccgagg acatcggcaa gctgccggat
     4981 tcgtcgatcg ccgagtcgat cgcgcgactg cccggcctga ccgcgcagcg cgagcgcggc
     5041 cgcgccaccc agatcaacat ccgcggcctg tccggcgact tcgccggcac caccctcaac
     5101 ggccgcgaga tgacgacgac cagcgagaac cgcggcgtcg agttcgacca gttcccgtcc
     5161 gagctgctta gcggcgtgac cgtgtacaag accccggacg ccgcgctggt cggccagggc
     5221 ctgtccggca ccgtcgacat gcacaccgtg cgcccgctgt cgttcgacaa gcgcgtgatc
     5281 accggcaact accgcgccga ccagaacagc gtcaacggcg gcaaggacta cggcaaccgc
     5341 tacagcgcca cctacatcga ccagttcctc gaccacacct tcggcgtggc gatcggctac
     5401 gcccacctcg acagcccgca gccgggctac cagaacgagg cctggggcta cgcgcagggc
     5461 tcggtgccgg agcgcaaccc ggtctgggtg tacggcggcg gcaagatcta ccgcttcaac
     5521 gacgacctca agcgcgacgg cctgatggcc acgctgcagt acaagccgaa ccagttctgg
     5581 gaatcgacgc tcgatgcgtt cttctccaag ttcgagaaga ccgaggacaa ggccggcatc
     5641 gagttcggca ccgcgtgggg ccagggccag ctgcagccgg gctacgtgat caacgacgcc
     5701 gggacgatca ccgacagcac ctggaccaac gtcaagccgg tcgtgcggat ggacagcaat
     5761 ccgtacaccg accgcctgca ttcgatcggc tggaacaaca agttcaggct cacggacaac
     5821 tggagcctca acaccgacct gtcgctgtcg gacaccaagc gccagatgcg ctacctcgag
     5881 acctacggtg gcctgaccgg caacggcacc accacggtgc gcgtggccct cgatccctcc
     5941 ggccagttca acaacctgac cttcggttcc gatttcagcg acccgaacaa cctgcagctg
     6001 atcgacgccg gcaactgggg ccaggacggc tacctgaagg acttcgagat ccacgaccgg
     6061 ctcaaggcct accgcgtcga cgccacccgc ggcttcgact ccggcgcgtt cagcagcctc
     6121 accttcggcg tcaaccgcac cgaccgcacc aaggacaaga gctccctcga ggccaagctg
     6181 tgcctggtgg cctgcgcggg cgtgggcgat tcggcgccgt tcccgggttc cgccgaggcg
     6241 ttcgacttcg gcggactggg ttcgctggcg acctacaacg ccgaggacct gctgaactcc
     6301 ggcatctaca acctgcagcc gaagttccac ccggacatcg ccaacaagaa ctggtcggtg
     6361 cacgaagtcg tcgacacctt ctacgtccag ctgaacctcg acacgaccct ggccagcatg
     6421 ccgctgcgcg gcaacttcgg cacccagctc gtgcgcgtgg accagagctc ggtcggctac
     6481 gacaccttcg cgggcaacgc cgccggcacg ctcgagcagc agggcaccaa gtacaacgac
     6541 gtcctgccga gcatgaacct ctcgctggag ttcatgcccg atacctacct gcggttcgcc
     6601 gccgcgcgcc agatgcagcg cccgcgcatg gacgacatgc gcgcgagctt caacgtcgac
     6661 ccgaacgtga actgcaacaa ctcgggcctg atgtggtgcg ccagcggcgg caacccgaac
     6721 ctgcgtccct ggctggcgaa cgcctacgac ctcagcgctg agcattactt caccaccgag
     6781 ctgggcaaca agggctattt cgccgcggcg tacttctaca aggacctgaa gtcgtacatc
     6841 tacacgcagg cgaccccgtt cgacttcgcc ggctacccgc tgccgccgcc ggaaagcggc
     6901 cagatcccgg gcgtgaccta tccggacagc accgtgggcc tgatcaccca gccgcgcaac
     6961 ggccagggcg gcctgctggc gggcctcgag ctgaccgcgt cgatgccgct ggacctgttg
     7021 tggaacccgc tcaacggctt cggcatccag gcgagctatt cggagaaccg cacctcgatc
     7081 catccgaacg gccccggcac cagcgatccg ctgcccggct tctcgaagta cgtgtccagc
     7141 gtcaccgcgt actacgagca caacggcttc tcgatccgcc tgagcgagcg caagcgttcg
     7201 tccttccgcg gcgagacccg cggcttcggc gccgacctgg cctacatcga ctaccagccg
     7261 gagaaggtcc aggacgc
//
LOCUS       DATIQC010000199         1818 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_154279, whole genome shotgun sequence.
ACCESSION   DATIQC010000199 DATIQC010000000
VERSION     DATIQC010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154279"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..428)
                     /locus_tag="VLM17_04110"
     CDS             complement(<1..428)
                     /locus_tag="VLM17_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003480335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR64776.1"
                     /translation="MSRKLRTLLTLVLLAGVFAYRHYRDHAPAPAAAPSHRHAAGAAA
                     PPPRRFGALAFTPCTLAPVLGASGVEAQCGTLSVAENPAAPHGRRIALNIAWVPAGDD
                     NPTEPDPVFMLAGGPGQSATETFPQVAPAFAEILKKRNVVL"
     gene            complement(448..645)
                     /locus_tag="VLM17_04115"
     CDS             complement(448..645)
                     /locus_tag="VLM17_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64777.1"
                     /translation="MATAHSDDHGRRPRGTARVPFLMCGLAFLGLAVANHRSAFLGVG
                     LAFVGSGIALLGHGRKRTPRA"
     gene            complement(656..853)
                     /locus_tag="VLM17_04120"
     CDS             complement(656..853)
                     /locus_tag="VLM17_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007806678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR64778.1"
                     /translation="MDSRVRELREAQGWSQGELAERLAVSRQTVNAIETGKYDPSLPL
                     AFRIARLFGQPLEAIFLPADQ"
     gene            complement(853..1431)
                     /locus_tag="VLM17_04125"
     CDS             complement(853..1431)
                     /locus_tag="VLM17_04125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64779.1"
                     /translation="MSRLSRRFAALGLVLLGAALAADHLAPRVLPDFAQGLLYGLAIG
                     CLLGAVLKARTPDPCDTSTPEQRRRYLREFVPAMALYVVAIIGSVTLLQHVDAPGLRA
                     LVALLPVPPIALAMRALVRRVRDADELQRRIELEAVSVATLLVSLGYLTAGLLQKARV
                     IDVPSAVAMIWVFPLVCLVYGFAKILVGRRYA"
     gene            complement(1541..>1818)
                     /locus_tag="VLM17_04130"
     CDS             complement(1541..>1818)
                     /locus_tag="VLM17_04130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009594336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HSR64780.1"
                     /translation="EFRAFAARFPANFRFVPCFSRELPEAGSPQAHADVRHGYVQQFL
                     GEFAPDAGADIAYLCGNPNMVDACFEELKGFGLPVAQIRREKYISNK"
BASE COUNT          279 a          622 c          695 g          222 t
ORIGIN      
        1 aggaccacgt tgcgcttctt caggatctcg gcgaacgcgg gcgcgacctg cgggaaggtt
       61 tccgtcgccg actggccggg gccaccggcg agcatgaaca ccggatccgg ttcggtcggg
      121 ttgtcgtcgc cggccggcac ccaggcgatg ttcagcgcga tgcgccggcc gtgcggcgcc
      181 gccggattct ccgccaccga cagcgtgccg cattgcgcct cgacgccgct cgcgccgagt
      241 accggcgcca gcgtgcatgg agtgaaggcg agcgcgccga acctgcgcgg cggcggcgcg
      301 gccgcgccgg cggcgtggcg gtgcgagggc gccgcggcgg gcgccggcgc gtggtcgcgg
      361 taatggcggt aggcgaagac gccggcgagc agcaccagcg tcagcagggt tcggagcttg
      421 cgggacatgc gggttccccg gagtgaatca ggcgcgcggc gtgcgcttgc ggccgtggcc
      481 gagcagggcg atgccgctcc ccacgaaagc gaggccgacg cccaggaagg cgctgcggtg
      541 gttggccacg gccaggccca ggaaggccag gccgcacatc aggaatggaa cgcgggcggt
      601 gcccctgggc ctcctgccgt ggtcgtcgga gtgcgcggtg gccatcggcc tcacctcact
      661 ggtcggcggg aaggaagatc gcctcgagcg gctggccgaa cagccgggcg atgcggaagg
      721 cgagcggcag gctcgggtcg tacttgccgg tttcgatcgc gttgacggtc tgccgcgaaa
      781 ccgccagccg ctcggccagc tcgccctgcg accagccctg cgcctcgcgc agttcgcgca
      841 cgcggctgtc catcaggcgt agcgacggcc gaccaggatc ttggcgaagc cgtacaccag
      901 gcagaccagc gggaacaccc agatcatcgc caccgccgac ggcacgtcga tcacccgcgc
      961 cttctgcagc aggccggcgg tgaggtagcc gagcgagacc agcagcgtcg ccacgctcac
     1021 cgcctcgagc tcgatccggc gctgcagttc gtccgcgtcg cgcacccggc gcacgagcgc
     1081 gcgcatcgcc agcgcgatcg gcggcaccgg cagcagcgcg accagtgcgc gcagccccgg
     1141 cgcgtcgacg tgctggagca gcgtgaccga accgatgatc gcgaccacgt acagcgccat
     1201 cgccggcacg aactcgcgca ggtagcggcg gcgctgttcc ggcgtgctgg tgtcgcaggg
     1261 atcgggcgtg cgcgccttca gcaccgcgcc gagcaggcag ccgatcgcca gcccgtagag
     1321 caggccctgg gcgaagtcgg gcagcacgcg cggggcgagg tggtcggcgg ccagggcggc
     1381 gccgagcagg accaggccga gggcggcgaa gcggcgggaa aggcgggaca tccgggaggg
     1441 cctgtcaaac atgcttgaca gaacgatagg ccggccgcgg cgcgcctgtc aagcgttctt
     1501 gacagggggg cggccggcgc gcgcaacgcc cgggtccggc ctacttgttg ctgatgtact
     1561 tctcgcggcg gatctgcgcc accggcaggc cgaagccctt cagctcctcg aagcaggcat
     1621 cgaccatgtt cgggttgccg cacaggtagg cgatgtcggc gcccgcgtcg ggcgcgaatt
     1681 cgccgaggaa ctgctgcacg taaccatggc gcacgtcggc atgcgcctgc ggcgaccccg
     1741 cttcgggcag ctcgcgcgag aagcagggca cgaagcggaa gttggccggg aaacgggcgg
     1801 cgaaggcgcg gaactcct
//
LOCUS       DATIQC010000200         2542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_13534, whole genome shotgun sequence.
ACCESSION   DATIQC010000200 DATIQC010000000
VERSION     DATIQC010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13534"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /locus_tag="VLM17_04135"
     CDS             complement(<1..395)
                     /locus_tag="VLM17_04135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64781.1"
                     /translation="MFVLCPHCQFLVAIDPASGRPPAQCPRCGKALLQAPAVAAPAPG
                     ATATAAPPTAAPTTEPAPAAHAADASGDAEASTAPSATPVADASVQHAGGAADAPGIA
                     AGSDAIAARAGNEAVRREAHSAASTNEPPT"
     gene            complement(438..1355)
                     /gene="prmA"
                     /locus_tag="VLM17_04140"
     CDS             complement(438..1355)
                     /gene="prmA"
                     /locus_tag="VLM17_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HSR64782.1"
                     /translation="MPFLELTLRCREHEQPRYETALEDVGALAVTLLDADADTSNEHA
                     ILEPGVGETPLWDALVLSALFAHDTDPLLLLAALESFDPGLDWTRASFRSVEDQDWER
                     AWMDQYVPLQFGARTWIVPWNRELPDEAAQPDAAVVRLDPGLAFGSGTHPTTALCLRW
                     LDALATEGALRDARVLDFGCGSGILALAALKLGAARAVGVDNDPQALVATRDNAGRNG
                     LADRLDAFLPQDAPPATYPVVLANILATALEQLADTLAACVAPGGRIALSGILAGQEP
                     PLLARYAAWFDALQVEQDGDWVRIDGVRR"
     gene            complement(1450..2151)
                     /locus_tag="VLM17_04145"
     CDS             complement(1450..2151)
                     /locus_tag="VLM17_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64783.1"
                     /translation="MSAEPHASQRRAARRQLDQVVVGIELTLISIIQGLALGVLAASA
                     VQPLVAWQWESWPYILTGLALILVFWSRSLVHTLSFIGWPLEFGHTFLYFAVTLIEAA
                     ALSQVAAPERWFALNTLYAACVWGLYAWDLRVVRAHAGDFDSPGERALLADVLADQRR
                     NIRLLMPLAIGFQGVSWWLLHAYPRATLQGHWHLALIGLSFAFSLNYLYDGVRLLRRR
                     QEWIVERAAQARPAH"
     gene            complement(2231..>2542)
                     /locus_tag="VLM17_04150"
     CDS             complement(2231..>2542)
                     /locus_tag="VLM17_04150"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660825.1"
                     /note="an AccC homodimer forms the biotin carboxylase
                     subunit of the acetyl CoA carboxylase, an enzyme that
                     catalyzes the formation of malonyl-CoA, which in turn
                     controls the rate of fatty acid metabolism; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HSR64784.1"
                     /translation="TITGFHPPGGPGVRVDTHIYSGYRVPSNYDSMIGKLIVHGPDRE
                     TAIARMRVALSEMVVDGIKTNVALQQRIMRDKGFQAGGQNIHYLEKRLAERKDKALSI
                     V"
BASE COUNT          348 a          880 c          965 g          349 t
ORIGIN      
        1 gtgggcggtt cgttggtgga cgcggcggaa tgcgcctcgc gacggaccgc ttcgttgccg
       61 gcgcgcgcgg cgatcgcgtc gctgccggcc gcgatgcccg gcgcatcggc tgcgccgccg
      121 gcgtgctgga ccgatgcgtc cgcgacgggc gtcgccgatg gagccgtcga tgcctccgcg
      181 tcgccgctgg cgtccgctgc gtgcgccgcc ggagccggtt cggtggtggg tgcagcggtg
      241 ggcggcgccg ccgttgccgt cgcgccgggg gcgggcgcgg cgacggccgg cgcctgcagc
      301 agcgccttcc cgcaccgcgg gcattgcgcc ggcgggcggc cgctggccgg atcgatcgcg
      361 accaggaact ggcagtgcgg gcagaggacg aacatgcggc tattgttccc gcactcgcgg
      421 ggccggacgc aagccggtca gcggcgcacg ccgtcgatcc gcacccagtc gccgtcctgc
      481 tcgacctgca gcgcgtcgaa ccatgccgcg tagcgcgcca gcagcggcgg ttcctggccg
      541 gcgaggatgc ccgacagcgc gatgcgcccc cccggggcga cgcaggcggc gagggtgtcg
      601 gcgagctgct cgagcgcggt cgcgaggatg ttggccagca ccaccggata ggtcgccggc
      661 ggcgcgtcct gcggcaggaa tgcgtcgagg cggtcggcga ggccgttgcg cccggcgttg
      721 tcgcgcgtgg cgacgagcgc ctgcggatcg ttgtcgacgc cgaccgcgcg tgcggcgccg
      781 agcttgagcg cggccagcgc gaggatgccg ctgccgcagc cgaagtcgag cacgcgcgca
      841 tcgcgcaacg cgccctccgt ggcgagcgcg tcgagccagc gcaggcacag cgcggtggtc
      901 gggtgcgtcc cggaaccgaa cgccaggccg gggtccagcc gcacgacagc ggcatcgggc
      961 tgcgccgcct cgtccggcag ctcgcggttc cacggcacga tccaggtgcg cgcgccgaac
     1021 tgcaacggca cgtactggtc catccacgcg cgctcccagt cctggtcctc gacgctgcgg
     1081 aaggaggcgc gcgtccagtc gaggccgggg tcgaaggatt cgagcgcagc gagcagcagc
     1141 agcggatcgg tgtcgtgcgc gaacagcgcg ctcagcacca gcgcatccca cagcggcgtc
     1201 tcgcccacgc cgggctcgag gatggcgtgt tcgttgctgg tgtcggcatc ggcgtcgagc
     1261 agcgtcaccg ccagcgcgcc gacgtcctcc agcgccgttt cgtagcgcgg ctgctcgtgt
     1321 tcgcggcagc gcagggtgag ttcgaggaag ggcatggcgg gcgcgggcgg ggaaagcgcc
     1381 atcgtatcgc ggcgacgcgg ggtgcccgcg aagcgcgggt gtggcggcgg acgcgtcgtg
     1441 cgtgcccgct cagtgcgcag gccgcgcctg cgcggcgcgt tcgacgatcc actcctgccg
     1501 ccgccgcagc aggcgcacgc cgtcgtagag gtagttgagg ctgaaggcga acgacagtcc
     1561 gatcagcgcc aggtgccagt gcccctgcag ggttgcgcgt gggtaggcgt gcagcagcca
     1621 ccacgacacg ccctggaagc cgatcgccag cggcatcagc aggcggatgt tgcgacgctg
     1681 gtcggcgagg acgtcggcga gcagcgcgcg ttcgcccggc gagtcgaaat cgccggcatg
     1741 cgcgcgcacc accctcaggt cccacgcata caggccccac acgcaggcgg cgtacagcgt
     1801 gttgagcgcg aaccagcgtt ccggcgcggc gacctgcgac aacgcggccg cttcgatcag
     1861 ggtcaccgcg aagtacagga acgtgtggcc gaactccagc ggccagccga tgaagctgag
     1921 cgtgtgcacc agcgagcgcg accagaagac caggatcagc gcgaggccgg tgaggatgta
     1981 cggccagctt tcccactgcc acgcaaccag cggttgcacc gcgctggccg cgagcacccc
     2041 gagcgcgagg ccctggatga tgctgatcag ggtcagttcg atgccgacca ccacctggtc
     2101 gagctggcgc cgggcggcgc ggcgctggct ggcgtgcggc tcggcggaca tcgtccttcc
     2161 ccggcaggat gcggtggcgc ccgcatccta cccgcgagcc gcgtgccgtg gcgacgcggg
     2221 ccgcgcccgc tcacacgatc gacagcgcct tgtccttgcg ctcggccagg cgcttttcca
     2281 ggtagtggat gttctgccca ccggcctgga agcctttgtc gcgcatgatc cgctgctgca
     2341 gggcgacgtt ggtcttgatg ccatcgacca ccatttcgct cagtgccacg cgcatgcggg
     2401 caatggcggt ttcgcggtcc gggccgtgca cgatcagctt gccgatcatc gagtcgtagt
     2461 tcgacggcac gcggtagcca ctgtagatgt gggtgtccac gcgcacgccg gggcctcccg
     2521 gcggatggaa gccggtgatg gt
//
LOCUS       DATIQC010000201        10180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_331340, whole genome shotgun sequence.
ACCESSION   DATIQC010000201 DATIQC010000000
VERSION     DATIQC010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 10180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10180
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331340"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..283)
                     /locus_tag="VLM17_04155"
     CDS             complement(<1..283)
                     /locus_tag="VLM17_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR64785.1"
                     /translation="MTTRCILVTGAGSGIGAGIATELAKAGHHLVVTDVALAPAQAVV
                     DGIRAGGGSAEALVLDVTSDDGVAAALAAVSRPVEVLVNNAGLQHVAPLE"
     gene            485..1105
                     /locus_tag="VLM17_04160"
     CDS             485..1105
                     /locus_tag="VLM17_04160"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HSR64786.1"
                     /translation="MTTFHVGYLIGSLSSTSINRLLSKALINLAPPELGFTEIPFREL
                     PLYSQDYDADFPQVARDFKRALADVDAVLFVTPEYTRSIPGALKNAIDWASRPYGQNS
                     FARKPSAVIGTSPGAIGTALAQQDLRAVLSFCNSPQMNAPEAYIHFKPGLITPEGEVS
                     DASTEEFLRNYMQELHRFIERVLTVLPSTRAQAQAQSDERRQPRAH"
     gene            1195..1830
                     /locus_tag="VLM17_04165"
     CDS             1195..1830
                     /locus_tag="VLM17_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003474586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HSR64787.1"
                     /translation="MQPRRHFSMLRDFQLADWFTLANAFCGTGAIFAAMRFLQEGSAS
                     VDSRRDLLWGMALIPLAFVFDALDGRVARWRQSASTLGRELDSLSDVISFGVAPAALG
                     YACGLQGGWDWVVLSYFVGCGVSRLARYNVTAEALSGAEGKVKYFEGTPIPTSVVIVG
                     LLAWVAAQARTGDALWFGVLQLGPWQLHPLVLVYALSGSLMISKTLHIPKP"
     gene            1863..2870
                     /gene="phaE"
                     /locus_tag="VLM17_04170"
     CDS             1863..2870
                     /gene="phaE"
                     /locus_tag="VLM17_04170"
                     /inference="COORDINATES: protein motif:HMM:TIGR01834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaE"
                     /protein_id="HSR64788.1"
                     /translation="MSDHARDDFETLARRYWQAWGDTLRQGAATGQGMPGWNEAMQWW
                     GALAPAAAQAPPATPAQPWLDLVQQLAGRFAGRDASAADIAGEWRRMLGANPMPDMLR
                     TLRLQGMQGLDAWFEATAPWLEAWQREAGSWLRLPAFGIAREHQERWQRLAQAQLDAR
                     AREDAFNRLLLRAGERAYAIFEQKLEAHAQPGKQLGTARALFDLWIDACEEAYAETAL
                     SADFREAWAALVNAQMRVRAGVQKEVEFAGGLFGMPTRTEVDAAHRRIAELERAVRGL
                     RDALGAQRGADGQDRPDPAKPAAGGAAPARKAAKKPAQRPAAGARAKPARGTPRGGAA
                     R"
     gene            2867..3949
                     /locus_tag="VLM17_04175"
     CDS             2867..3949
                     /locus_tag="VLM17_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaC"
                     /protein_id="HSR64789.1"
                     /translation="MTGPLGFTPQALAEEALALQRRLGAAFGTLRAVEDPIVGATPRE
                     EVWRDGKVVLYRFRGDTSGDGRAPTAKTPLLVSYALVNRPYMVDLQVDRSIVKGLLAR
                     GEDVYVIDWGYPDRSDRFLGLEDYIERFLGGAVDHLRAAHGLDAVNLLGICQGGAFAL
                     CYAALHPDKVRNLVTMVTPVDFHAGDNMLSSWTRELDVDLFVDTLGNVPADLMNWCYL
                     MLKPFRLNMQKYVGLTDILDDRKAVEDFLRMEKWIFDSPDLAGEAFRQFVKQFYQGNG
                     FVEGGVRIGGREVHLGMVEMPVLNIFAEQDHLVPPESSKALQGLVGSDDYTELSFRGG
                     HIGIYVSGRAQKEVPTAIHDWLAKRG"
     gene            3951..4424
                     /locus_tag="VLM17_04180"
     CDS             3951..4424
                     /locus_tag="VLM17_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64790.1"
                     /translation="MRALAFALGVAWAAPNTLLGLLAGLAALPFGARPHWRPRELALV
                     FQCYPWGPGGALTLGNVILHTGDHLDVSCVTYAHRAGLGEEPPIRLAAHERAHVLQAM
                     VLGPLFLPLYLACGGVSVRNRFERAADRYARSGHGWWPWASDDDVPRAPTNGRMH"
     gene            4892..5131
                     /locus_tag="VLM17_04185"
     CDS             4892..5131
                     /locus_tag="VLM17_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64791.1"
                     /translation="MDCLQENLRQTAAALLLEAGASAVAVALDEDPDGYWIAVGPKSH
                     IPFLFGCANASNAAKADELARQSARVANMESRRLQ"
     gene            complement(5279..6022)
                     /locus_tag="VLM17_04190"
     CDS             complement(5279..6022)
                     /locus_tag="VLM17_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012076318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64792.1"
                     /translation="MSTATSISPATPARVLVIDDEPQIRRFLEISLRAQGYRVALAET
                     GEEGLALLATGGADLLILDLGLPDRDGRALLLQLREWSSIPVIVLTVRGDESEKVAVL
                     DAGANDYVTKPFGVQELMARVRALLRTRALPENAEPVHDDGRLRVDLARREVLLDGEP
                     LTLSRKEYALLALLVRHAGRVVTQPQLLREVWGPSHQADTHYLRILVAKLRQKLGDEA
                     SSPRWIVTEPGVGLRFSGGDAEAFGDGKS"
     gene            complement(6019..7455)
                     /locus_tag="VLM17_04195"
                     /pseudo
     CDS             complement(6019..7455)
                     /locus_tag="VLM17_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016849531.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            7775..9622
                     /locus_tag="VLM17_04200"
     CDS             7775..9622
                     /locus_tag="VLM17_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HSR64793.1"
                     /translation="MMLGAIGVVFGDIGTSPLYTIKEAFAPHYGLTPDQATVLGILSL
                     VFWSLMVVITVKYVAVIMRADNDGEGGIMALTSLAQRTLTAAPRSAYLIGILGVFGAA
                     LFFGDGVLTPAISVLSAVEGLEVAAPSMQAWILPATIAVLVLLFATQRFGTDFVGKAF
                     GPVIVVWFVTLAALGVHNIAANPAVLQALNPLWSARFFFAHGWHGIFILGAVVLAVTG
                     GEALYADMGHFGRRPIQYAWNFLVLPALTINYLGQGAVILVHPDAVVNPFYMGMPSWA
                     QYPMVGLATAATVIASQAVISGAYSATRQAIQLGYLPRMRITHTSHATIGQIYIPSIN
                     WMLMAATIATVIGFGSSTALATAYGVSVTGTMLITSIILIVAMRDRVAIPAQFFWPLA
                     ALFVLVDVAFLFANVVKFLDGAWFPIALGVVVFTVLRTWGRGRALLRAEILKDGIRLD
                     SFLPGLMLAPPTRVPGTAVFLTPQTGIVPKALLHNLKHNKVLHERNVLLTVETTASPF
                     VASGARLTIDTIGDDFYRAIIRYGFMETPDVPLALMRCGGADERFCFDPMETTYFASR
                     ESIVANRKRGMPTWRDKLFGFMHRNAAPATDFFRIPSSRLVELGSPVEI"
     gene            complement(9850..9936)
                     /locus_tag="VLM17_04205"
     tRNA            complement(9850..9936)
                     /locus_tag="VLM17_04205"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9900..9902),aa:Leu,seq:caa)
     gene            complement(9977..>10180)
                     /locus_tag="VLM17_04210"
     CDS             complement(9977..>10180)
                     /locus_tag="VLM17_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine dioxygenase"
                     /protein_id="HSR64794.1"
                     /translation="GMHAGPGSAGSLIPPHEYHTIGNASADAIAISLHIYKGPMDHCT
                     TFVPAGGEWYVRAAKTLCTDATA"
BASE COUNT         1508 a         3559 c         3504 g         1609 t
ORIGIN      
        1 cctccagcgg cgcgacgtgc tgcaggccgg cgttgttcac cagcacctcg acggggcgcg
       61 acaccgcggc gagcgcggcg gcgacgccgt cgtcggaggt cacgtcgagg acaagggctt
      121 cggccgagcc gccgccggcg cggatgccgt cgacgaccgc ctgggccggc gcgagcgcga
      181 cgtcggtgac gacgaggtgg tggccggcct tcgccagttc ggtggcgatg ccggcgccga
      241 tgccgctgcc ggcgccggtg acgaggatgc agcgggtggt catggcgagg caccgcgggg
      301 aagggcgcgc cagcctagca gggccggccg gagccatcgc ctgcccggta gcggtcacgc
      361 tccgacgctg ctgccgccgt actggcgtgc gaacagcgcg catcccacct cgtcgcgtgc
      421 gccgccgacg gcgccttgat ggtcgcgggc gcagcatccg ggtccccccg accggatgcc
      481 cgccatgacc actttccacg tcggttacct gatcggcagc ctgtccagca cctcgatcaa
      541 ccgcctgctc tcgaaagcgc tgatcaacct cgcgccgccg gaactcggct tcaccgagat
      601 tcccttccgc gaactgccgc tgtactcgca ggactacgac gccgacttcc cgcaggtcgc
      661 gcgcgacttc aagcgcgcgc tggcggacgt ggacgcggtg ctgttcgtca cccccgaata
      721 cacccgctcg atccccggcg cattgaagaa cgccatcgac tgggcgagcc gcccgtacgg
      781 gcagaactcc ttcgcgcgca agccgtccgc ggtcatcggc acctcgccgg gggcgatcgg
      841 caccgcgctc gcgcagcagg acctgcgcgc ggtcctgagc ttctgcaatt cgccgcagat
      901 gaacgcgccg gaggcctaca tccacttcaa gcccggcctg atcacgcccg aaggcgaggt
      961 cagcgatgcc tcgaccgagg aattcctgcg caactacatg caggagctgc accggttcat
     1021 cgagcgcgtg ctgaccgtgc tgccatcgac gcgggcgcag gcgcaggccc aatccgacga
     1081 gcgccggcaa ccgcgcgccc attgagcggc ggggacggtg gctcggcgag gccccgcttg
     1141 ccgccgtcac gcccgcttgg gcatgctggt cgccgaccga aagcggagca accgatgcag
     1201 cccaggcgcc acttctcgat gctgcgcgat ttccagctgg ccgactggtt cacgctggcg
     1261 aacgcgttct gcggcaccgg cgcgatcttc gcggcgatgc gcttcctgca ggaaggcagc
     1321 gcgtccgtcg acagccggcg cgacctgctc tggggcatgg cgctgatccc gctggcgttc
     1381 gtgttcgatg cgctcgacgg gcgcgtggcg cgctggcggc agtcggcgtc caccctcggc
     1441 cgggaactgg attcgctgtc ggacgtcatc tccttcggcg tcgcgcccgc cgcgctcggc
     1501 tacgcctgcg ggctgcaggg cggttgggac tgggtcgtgc tgtcgtactt cgtcggctgc
     1561 ggcgtcagcc gcctggcgcg ctacaacgtg accgccgagg cgctgtcggg cgcggaaggc
     1621 aaggtgaagt atttcgaggg cacgccgatc ccgaccagcg tggtcatcgt cggcctgctg
     1681 gcgtgggtgg cggcgcaggc ccggaccggc gacgcgctgt ggttcggcgt cctccagctc
     1741 ggcccgtggc agctgcaccc gctggtgctg gtgtatgcgc tgtcgggctc gctgatgatc
     1801 agcaagacgc tgcatatccc gaaaccctga ggcggtagca tgcgcactcc aggaggaagc
     1861 gcatgagcga ccacgcacgg gacgatttcg agacgctcgc ccgccgttac tggcaggcct
     1921 ggggcgacac gctgcggcag ggcgcggcga cggggcaggg catgccgggc tggaacgagg
     1981 cgatgcagtg gtggggcgcg ctcgcgccgg ccgccgcgca ggctccgccg gccacgccgg
     2041 cgcagccctg gctggacctg gtgcagcagc ttgccggccg cttcgccggc cgggatgcga
     2101 gcgccgccga catcgccggc gaatggcggc gcatgctcgg cgccaatccg atgcccgaca
     2161 tgctgcgcac cctgcgcctg cagggcatgc aggggctgga cgcgtggttc gaggcgaccg
     2221 cgccctggct ggaagcctgg cagcgcgaag ccggcagctg gctgcgcctg ccggcgttcg
     2281 gcatcgcgcg cgagcaccag gagcgctggc agcgcctcgc ccaggcgcag ctcgatgcgc
     2341 gcgccaggga ggacgcgttc aaccgcctcc tgctgcgcgc cggcgaacgc gcctacgcga
     2401 tcttcgagca gaagctcgag gcgcacgcgc agccgggcaa gcagctcggc accgctcgcg
     2461 cgctgttcga cctgtggatc gacgcttgcg aggaggctta cgccgaaacc gccctgtccg
     2521 ccgacttccg cgaggcgtgg gcggcgctgg tcaacgcgca gatgcgcgtg cgcgccggcg
     2581 tgcagaagga agtggagttc gccggcgggc tgttcggcat gccgacgcgg accgaggtgg
     2641 atgcggcgca ccgccggatc gccgagctgg agcgcgccgt gcggggcctg cgcgatgcgc
     2701 tcggcgcgca gcgcggcgcc gatggacagg accggcccga tccggcgaag cccgcggcgg
     2761 gcggggccgc tccggcaagg aaggccgcga agaaacccgc gcagcggccg gcggccggcg
     2821 cgcgggcgaa accggcgaga ggcacgccgc gcgggggagc cgcgcgatga ccggcccgct
     2881 cggtttcacc ccgcaggcgc tcgccgagga ggcgctggcg ctgcagcgca ggctcggcgc
     2941 ggcgttcggc acgctgcggg cggtcgaaga tccgatcgtc ggcgcgaccc cgcgcgagga
     3001 agtctggcgc gacggcaagg tcgtgctgta ccgcttccgc ggcgacacgt ccggcgacgg
     3061 ccgggcgccg acggcgaaga ccccgctgct ggtcagctac gcgctggtca accgtcccta
     3121 catggtcgac ctgcaggtgg accgttcgat cgtcaagggc ctgctcgcgc gtggcgagga
     3181 cgtctacgtc atcgactggg gctacccgga ccgttccgat cgcttcctcg gcctggagga
     3241 ctacatcgaa cgcttcctcg gtggcgcggt cgaccacctg cgcgccgcgc acggcctgga
     3301 cgcggtcaac ctgctcggca tctgccaggg cggcgcgttc gcgctgtgct acgcggcgct
     3361 gcacccggac aaggtgcgca acctcgtcac catggtcacg ccggtcgact tccacgcggg
     3421 cgacaacatg ctctcgagct ggacgcgcga gctcgacgtg gacctgttcg tcgacaccct
     3481 cggcaacgtg ccggcggacc tgatgaactg gtgctacctg atgctcaagc ccttccggtt
     3541 gaacatgcag aaatacgtcg gcctgaccga catcctcgac gaccgcaagg cggtcgagga
     3601 cttcctgcgc atggagaagt ggatcttcga ctcgcccgat ctagcaggcg aggcgttccg
     3661 gcagttcgtc aagcagttct accagggcaa cggcttcgtc gagggtggcg tgcgcatcgg
     3721 cgggcgcgag gtgcacctgg ggatggtcga gatgccggtg ctcaacatct tcgccgaaca
     3781 ggaccacctg gtgccgcccg aatcgtcgaa ggcgctgcag ggcctggtcg gcagcgacga
     3841 ctacaccgag ctgtcgttcc gcggcggcca tatcggcatc tacgtgtccg ggcgcgcgca
     3901 gaaggaagtg ccgacggcga tccacgactg gctggcgaag cgcggctgac atgcgcgcgc
     3961 tggcgttcgc gctcggcgtg gcgtgggccg cgccgaacac gctgctcggc ctgctcgcgg
     4021 gactcgccgc gctgccgttc ggcgcgcgcc cgcactggcg cccgcgcgag ctggcgctgg
     4081 tgttccagtg ttacccgtgg gggccgggcg gcgcgctcac gctcggcaac gtgatcctgc
     4141 acacgggcga ccacctcgat gtctcctgcg tgacctacgc gcaccgggcg gggctcggcg
     4201 aggagccgcc catccggctc gccgcccacg agcgcgcgca cgtgctgcag gcgatggtgc
     4261 tggggccgct gttcctgccg ctgtacctcg cgtgcggcgg cgtcagcgtg cgcaaccgct
     4321 tcgagcgcgc cgccgaccgt tacgcgcgca gcggccacgg ctggtggcca tgggcgagcg
     4381 acgacgatgt tccgcgcgca ccgacgaacg gtcgcatgca ttgacgtccg catcactccg
     4441 cgcgcgctag gctgcgagcg tcggagaaag gacggataag cgggtcccgg atgcaagtcc
     4501 gatcacgcgg attcgattcg atttccggca catgaaggtc cagtcccctc cacggttagc
     4561 accgcgtgag actgggcctt cagctttttc cgggccggga attccgcagg caacgcgttc
     4621 agcacggcgg cagtgcgcgc gcatgctccg ccggccgttc gcttcgcttc gatcgcgcca
     4681 gaagcagcgg tcgagcgtgc gccggttctg tgcctcctcc ccttgcgatc tcccattaag
     4741 ccggtcaagc gggggcggcg gcgtccccgt ggatcggtga atgggcggaa ggtcgcgatc
     4801 gtcgacgaca ggcggcccca tcccctcgcg cttgtcgttg gattgatcga ttccgcgcgg
     4861 agactggagg accatcgcga tgagctccca catggattgc ctgcaggaga atctccgaca
     4921 gacggctgct gcactgctgc ttgaagccgg cgcatcggcc gtggccgtgg cgctcgacga
     4981 ggaccccgac ggctactgga tagccgtggg cccgaaatcc cacatcccgt tcctcttcgg
     5041 ctgtgccaac gccagcaacg ccgccaaggc cgacgagctt gcgcgtcaat ccgcccgcgt
     5101 ggccaacatg gaatcgcgtc gcctgcaata ggtgggatgc attgctgttt cggcaatcac
     5161 caccgagtgg cgagcgaagg cggcggctgt ttccgctccg cgggcatggg aaacgaaagg
     5221 gtccgccgtc ggccatcccg gcaggcatgc agggtcgtcc accgcaggcc agcccagcct
     5281 acgattttcc atcgccgaaa gcctcggcat ctccgcccga gaatcgcagc ccaacgcccg
     5341 gctcggtgac gatccagcgg ggcgacgaag cctcgtcgcc cagcttctgg cgcaacttgg
     5401 cgaccaatat ccgcaggtaa tgcgtgtccg cctggtggct cggaccccac acctcccgaa
     5461 gcagttgcgg ctgggtcacg acccggccgg catgccgcac gagcaacgcg agcagtgcgt
     5521 actccttccg ggacagcgtg agcggctcgc catccaggag gacctcccgg cgagccaggt
     5581 cgacgcgaag gcggccgtcg tcgtggacgg gctccgcgtt ttccggcagc gctcgcgtcc
     5641 gcagcagggc gcgcacccgc gccatgagtt cctgcacgcc gaaaggcttg gtcacgtagt
     5701 cgttggctcc ggcgtcgagt acagcgacct tctccgactc gtccccgcga acggtgagga
     5761 cgatcaccgg gatagaggac cactcgcgaa gctggagcag cagtgcccgg ccgtcgcggt
     5821 ccggcagccc gaggtccagg atcagcaggt ccgcgccgcc cgtggccagg agggcaagac
     5881 cttcctcgcc cgtttcggcg agtgccacgc ggtagccttg cgcgcgcagg ctgatctcga
     5941 gaaacctgcg gatctgcggc tcgtcgtcga tcacgagcac gcgcgccggt gtcgcaggcg
     6001 aaatggacgt ggcggtgctc atgacgcccc tccaggcggg gccagcaatg gcaggctgat
     6061 gcgaatcgtg gtgccgccac cgctggccgg caatgcctcc acttctcctc cgtgcgcccc
     6121 gatcatgccg cgacagatcg cgagacccaa tccggtgcca tggcggccgc gatcgccccg
     6181 ctccacgctg tagaacatgt cgaagacgcg gcggcgttcc gcttcgggaa tgccgggccc
     6241 gcggtcggtg atgtcgatgc gcaggcggtc attcccttcg cgccgtgcgt cgatggcgat
     6301 gggcgcgccc gggggcgaga acctggcggc gttctcgatc acgttgaaca acgcctgttc
     6361 caccaacgca gggtggaccc agatcggccc gatggccgcg gcgatcgtca cctcgaagtg
     6421 gacgcccgtc cggtaacgct gcagccgccc gatcgctgcg cccaccagtt catccacgcc
     6481 gatccagtcg cgccggaggg ccagcccgcc atggccgagg cgcgtcatgt cgagcaggtt
     6541 ctggatgtac cggtccagcc gctggccttc ctcgcgcacg gtgtcgagca ggctgtcgcg
     6601 atccttcgcg tccagcgcgt cgccgtagct ctggaggctc tcggcggccc cgatgatgga
     6661 ggccaatggc gagcgcaggt cgtgcgagac cgacgacagc aacgcgttgc gcagccgctc
     6721 actctcgttg gcgatgcgtt ccgactccag gtcggccgcc agccgcatgc gcagcagtcc
     6781 ctgtgcgatg tcatcggcca tggcccgcgc gagctgtagt tccggttcgt ccagccgttc
     6841 gccgcgcgac aggcgcttga tcccgatgac gccgagcgtt cccgcaggcg ccggcaacgg
     6901 caggaaccac catccgaact cctcgatggt ttcctccggc cggttgtcgg cattgcgtcg
     6961 cagcgcccca tgcaatgcgc gttcgaccgc gtcggcggtc cgcccgtggt cttccaggcg
     7021 cacccacact tccgcctcca atgtctcccg gaagacctgc ttcgcggcgt ccaggacttc
     7081 accctgcgtt gccgcgacaa cgaggcgctg gccgagctcc tgtcgcgcgc gcacatgccg
     7141 gtgggccacc tgcagctcct gcacctgcat ggccaggcgc gaggccagcc gcccggcgag
     7201 cagcgcggca gcaaggaaca aggcgaccgt cgccacgccg tgccgggcgc tgatgtaaag
     7261 cgtgtaacgc ggttcgatga agaagaagtt gtaggccagg aagcacaaca ccgccgtggc
     7321 caccgccggc ccggtgtgcg ttcgcgaagc gaccaccagc accgccagca tgaataccag
     7381 tgacaggtcg cccaggccga accagcgttc cgccagcgcg gcgaccaaga ccgccatcgc
     7441 cgaagcgaca acagcgatca cgtagccgcc tgctggtgcg gcgggtcgag gtgcgcgggc
     7501 ggcggcgtcg cgggatggca ttggagtcga tggggagagt gccccggcat tgtgcccacg
     7561 cgacggccct ggcacgcccg gcgtccgtcc cggtgccgcg aatttacgca gaatttacgc
     7621 gcgcggggcg ggggcctctt tcgactttac gctgcccggc ggaacactgc tgtcccatgt
     7681 cggagcagat gcagtgagta ccacgagagc ctcccccgtc cggcccgagc cggcccaagc
     7741 cgccaggcat gcgggcgaag ccgggctcgg cgcgatgatg cttggcgcca tcggcgtcgt
     7801 cttcggcgac attggcacga gcccgcttta cacgatcaag gaagcgtttg ccccgcatta
     7861 cggactgacg ccggatcaag cgacggtgct cgggatcctc tcgctcgtgt tctggtcgct
     7921 gatggtcgtg atcacggtga aatacgtggc ggtgatcatg cgggccgaca acgacggcga
     7981 aggcggcatc atggcgctga cttcgctcgc ccagcgcacg ctgaccgccg cgccgcggtc
     8041 ggcctatctc atcggcatcc tcggcgtctt cggggctgcg ctgttcttcg gcgacggcgt
     8101 gctcacgcct gcaatctccg tgctatcggc cgtggaaggg ctggaggtcg ctgccccctc
     8161 gatgcaggcc tggatcctgc cggcgacgat cgcggtactg gtcctgctgt tcgccacgca
     8221 acgcttcggg acggacttcg tgggcaaggc gttcgggccc gtgattgtcg tctggttcgt
     8281 gacgctcgca gcgctcggcg tccacaacat cgcggcgaac cccgctgtgc tccaggcgct
     8341 caaccccctg tggagtgcac ggttcttctt cgcccacggc tggcatggaa tcttcatcct
     8401 cggcgccgtg gtgctggcgg tcaccggcgg cgaggcgctc tacgcggaca tgggtcattt
     8461 cggtcggcgc cccatccagt acgcctggaa ctttctggtc ctgcccgccc tgaccatcaa
     8521 ctacctcggc cagggtgcgg tgatcctcgt gcaccccgac gcggtggtca atcccttcta
     8581 catgggcatg ccgtcatggg cgcaataccc gatggtcggg ctggccacgg cggcgacggt
     8641 catcgcctcc caggccgtga tcagcggcgc ctattccgcg acgcggcagg cgatccagct
     8701 tggctacctg ccgcgcatgc ggatcaccca cacctcgcac gcgaccatcg gccagatcta
     8761 catcccgtcg atcaactgga tgctgatggc ggcgaccatc gccaccgtga tcggcttcgg
     8821 cagttccacg gcgctggcaa cggcctatgg cgtgtcggtc accggcacca tgctgatcac
     8881 cagcatcatc ctgatcgtgg cgatgcgcga ccgcgtcgcg atcccggcgc agttcttctg
     8941 gccactggct gcgttgttcg tcctggtcga cgtggccttc ctgttcgcca acgtggtgaa
     9001 gttcctcgac ggcgcgtggt ttccgatcgc gctcggcgtg gtcgtcttca cggtgctgcg
     9061 gacgtggggc cgcgggcgtg cgctgcttcg ggctgagatc ctcaaggacg gcatccggct
     9121 cgacagtttc ctccccgggc tgatgctcgc cccgcccacc cgggtgccgg ggacggctgt
     9181 cttcctcacc ccgcagacgg gaatcgtccc caaggcgcta ctgcataacc tcaagcacaa
     9241 caaggtgttg cacgagcgca acgtcctgct gaccgtcgaa acgaccgcct cgccgttcgt
     9301 cgcgtccggt gccagattga ccatcgacac gatcggcgat gacttctacc gggcgatcat
     9361 ccgttacgga ttcatggaga cgccggacgt cccgctcgcg ctgatgcgct gcggcggcgc
     9421 ggatgagcgc ttctgcttcg atcccatgga aacgacctat ttcgccagcc gcgagagcat
     9481 cgtcgcgaac cgcaagcgcg gcatgcccac ctggcgcgac aagctgttcg gcttcatgca
     9541 ccggaatgcc gcgcctgcga ccgacttctt ccgtatcccg agcagccgcc tggtcgaact
     9601 gggatctccc gtggagatct gaccaggccg aaggtggcac ccaacgggtc ctgcgccccg
     9661 ccacttcggc ggaatttccc cgggcgcgcc ttcgcagggc cggactccaa ggcggcgtct
     9721 acgcgcggcc tcggagctgt caacaggcgc caaccccacg cctggcattg ggtccctgaa
     9781 aacgcaaaaa acccgcgact tctcgcgggt ttttgtgagc cgggggcggg tcggctggaa
     9841 cgctcgcgtt ggtgccggaa gtgggactcg aacccacacg cttttaaggg cggcggattt
     9901 tgagtccgct gcgtctaccg attccgccat tccggcgcgg gcgcgcagta tagccgaggc
     9961 gttccgcgag ccggcctcag gcggtcgcgt cggtgcagag cgtcttcgcc gcgcgcacgt
    10021 accactcgcc gcccgccggc acgaaggtcg tgcagtggtc catcggaccc ttgtagatgt
    10081 gcagcgaaat cgcgatggcg tcggcgctgg cgttgccgat cgtgtggtac tcgtgcggcg
    10141 ggatcaggct gcccgcgctg ccggggccgg cgtgcatgcc
//
LOCUS       DATIQC010000202         4585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_331381, whole genome shotgun sequence.
ACCESSION   DATIQC010000202 DATIQC010000000
VERSION     DATIQC010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4585
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331381"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VLM17_04215"
     CDS             complement(<1..195)
                     /locus_tag="VLM17_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64795.1"
                     /translation="MANIDHGDDVRDPRNQPDGSHDQDTHGRKQNTGGNASSRKAAHH
                     DGGREAPGGAAHGGGSGRDRS"
     gene            complement(240..449)
                     /locus_tag="VLM17_04220"
     CDS             complement(240..449)
                     /locus_tag="VLM17_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64796.1"
                     /translation="MGTDIHARHQAESGRSHPPAGRNDDDTHALRAGKAGPTQRKSAH
                     GKEASTRAAGRDDRRSGSESGKPAR"
     gene            610..1200
                     /locus_tag="VLM17_04225"
     CDS             610..1200
                     /locus_tag="VLM17_04225"
                     /inference="COORDINATES: protein motif:HMM:NF020387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES domain-containing protein"
                     /protein_id="HSR64797.1"
                     /translation="MHHPHTRAVESRELDRALSDTFPASDPPSMTTPIVATPSAQYIA
                     PGEGGELRVYRVVEARDAAQPFAPDHAGGRWTHPGVACVYASLSPAAAVLEYLVHLEG
                     RTPSGLLMAVAALPANAVLAETNEPSTWSALPYRDEVRQLGDDWLHSGRSLALRVPSA
                     VCMDECRVLLNPEHPAFAALELVALRPLAIDERLRT"
     gene            1283..1654
                     /locus_tag="VLM17_04230"
     CDS             1283..1654
                     /locus_tag="VLM17_04230"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64798.1"
                     /translation="MPATIRHGYLVASALCALAGLATAPGGQAQARSGSAQSQQATRE
                     GERSTATQADATAAMRGEEAVTGDDFTRIDADHDGRISGGEAADAGLGARFKALDADG
                     DGYLSSSEFHAGLHADQPTRP"
     gene            1654..1851
                     /locus_tag="VLM17_04235"
     CDS             1654..1851
                     /locus_tag="VLM17_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007511652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPXCG motif-containing cysteine-rich protein"
                     /protein_id="HSR64799.1"
                     /translation="MPWLPSAAVRCPYCGERIELLVDESAGAQAYTEDCPVCCRPIAV
                     AVDGEAGEGGLRVEARSEHEA"
     gene            2103..2630
                     /locus_tag="VLM17_04240"
     CDS             2103..2630
                     /locus_tag="VLM17_04240"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64800.1"
                     /translation="MKQRTSPSRAIAAVLLCGAFATPLAFAQTHHRHHKASTTAATST
                     DVAGTSTTTDTSVSQSTDMGATPATPATPATPATPPTSANMGTDAGTNADASGATPAT
                     PATPATPASAAMDASGAKQVSWSDLDADHNGNLSKTEAGALSSLANVFDAADGNKDGT
                     LTADEYRAYLKAQGK"
     gene            2752..3513
                     /locus_tag="VLM17_04245"
     CDS             2752..3513
                     /locus_tag="VLM17_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSR64801.1"
                     /translation="MQPSATPPGIRLVAFDGDDTLWRSEDFYRAAQREFESMLARHVD
                     LDDVHARLYAVEKRNLALFGYGAKGMTLSMLEAAYAITGGRIAAAELHRIVEIGKSLL
                     QHPVELLPGIREAVATVAREHAVVLITKGDLFHQEAKVRASGLSDLFHRIEIVSEKDA
                     ATYARVLGEFGLVPSQFLMVGNSLRSDIAPVLALGGWAVHMPYHVTWVHETDAAEPAP
                     GETRWQRVDAPSALPAAVRALAERALQAGAVPPRS"
     gene            3580..4044
                     /locus_tag="VLM17_04250"
     CDS             3580..4044
                     /locus_tag="VLM17_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64802.1"
                     /translation="MATPLRWFAPVALAAGLGLAALAPAPAHAQNDALALTRQIVDIA
                     DVVVNGGVPYYRYGQYGPADRLVVERDYYGRPVYYRMVPRTVYYTQPRVVYYAPPRVV
                     YRDVPRGHAYGYWRHHDRDRDWDDDHRWRRDRDGDDRDRDGDRGGRHHHDDD"
     gene            4134..4568
                     /locus_tag="VLM17_04255"
     CDS             4134..4568
                     /locus_tag="VLM17_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019182871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64803.1"
                     /translation="MIRPLSSILAAAALALASAPSHAGTITCKMNFSLSGWSVFYRTS
                     SGEGVVHCSNGQRMAVRISAKGGGLSFGKSRITDGHGEFSGVHDIHDVLGSYATAEAH
                     AGAGKSTKAQAMTKGEVSLALTGKGEGWDVGVAFGKFTLEAR"
BASE COUNT          632 a         1713 c         1599 g          641 t
ORIGIN      
        1 cgaacggtcg cgcccgctgc cgccgccgtg cgcggcgccg cccggcgctt cgcgtccgcc
       61 gtcgtggtgc gcggccttgc ggctggaggc gttgccgccg gtgttctgct tgcggccgtg
      121 cgtgtcctgg tcgtggctgc cgtcgggctg gttgcgcgga tcacgcacgt cgtcgccatg
      181 gtcgatgttc gccatcgtcg tcctccactg gaagggttgc agcgagcgct ggcgtgtcat
      241 cagcgggccg gcttgccgct ttcgctgccg ctgcgccggt cgtcgcggcc cgcggcgcga
      301 gtcgacgctt ccttgccgtg cgcggatttg cgctgggtcg gcccggcctt gccggcgcgc
      361 agcgcgtggg tgtcgtcgtc gttgcgtccg gccggcggat ggctgcggcc gctctcggcc
      421 tggtggcgtg cgtggatgtc ggtgcccatc gtggttctcc cgtgcgcggt gtggccgcca
      481 tcatgcgcag ggcgatgtca gcgtgcgatg caggcggcgg cgcgacgggt gaatgcgcga
      541 cgcgctcacg catgcacgac gcgcgtcgtc gcacgctcgc gccatcgcag ggccagagcg
      601 gagccgtcca tgcaccatcc gcacacccgc gccgtcgaat cgcgcgagct cgaccgcgcg
      661 ctgagcgaca ccttccccgc gagcgatccg ccgtcgatga cgacgcctat cgtggccacg
      721 ccctcggcgc agtacatcgc gccgggcgag ggcggcgagc tgcgcgtgta ccgcgtggtg
      781 gaggcgcgcg acgccgcgca gcccttcgcg cccgaccatg caggcggccg ctggacgcat
      841 ccgggcgtcg cctgcgtgta tgcctcgctg tcgccggcgg ccgcggtgct cgagtacctc
      901 gtgcacctgg aaggacgcac cccttccggc ctgctgatgg cggtggccgc attgcccgcc
      961 aacgccgtgc tggcggagac caacgagccg tcgacctggt cggcgctccc ctaccgcgac
     1021 gaggtgcgcc agctcggcga cgactggctg cactcgggac ggtcgctggc cctgcgggtc
     1081 ccgagcgcgg tctgcatgga cgaatgcagg gtgctgctca acccggaaca tccggcgttc
     1141 gcggcgctgg agctggtggc gctgcgcccg ctcgcgatcg acgagcgcct gcgcacctga
     1201 accccgccgg cccgcggccg ctctcacccg ggctggatca ccgcaggtgc aggctcgtcc
     1261 gcggatcgca tccgggaagg ccatgcccgc caccattcga cacgggtacc tggtcgccag
     1321 cgcgctgtgc gccttggccg gcctcgccac cgcgcccggc ggacaggcgc aggcgcgatc
     1381 cggcagcgcg cagtcgcagc aggccacccg cgaaggcgag cgcagcaccg ccacccaggc
     1441 ggacgcgacc gcggcgatgc ggggcgagga ggcggtgacc ggcgacgact tcacccgcat
     1501 cgatgccgac cacgacggcc gcatcagcgg cggcgaggcg gccgatgccg gcctgggcgc
     1561 gcgcttcaag gcgctcgatg cggacggcga cggctacctc agcagcagcg aattccacgc
     1621 cggcctgcac gccgaccagc cgacgaggcc ctgatgccct ggctgccgag cgccgcggtg
     1681 cgatgcccgt attgcggcga acgcatcgaa ctgctggtcg acgagtccgc cggcgcccag
     1741 gcgtacacgg aggattgccc ggtgtgctgc cgcccgatcg cggtcgcggt cgacggcgag
     1801 gcgggcgagg gcggcctgcg cgtcgaggcg cgcagcgaac acgaggcctg aggcgtcaag
     1861 gttgtgttgc gttcagcgag gcacacgcgc gcgcggctgg cccaaacccg cgccgcggct
     1921 ggccattgac gcgccattca cgcgacgcct agcgggtttg cagtccgccg tggttaagcc
     1981 cgcgtggtgg cgtgcaccgg gtggcggcga agcattcatg cgctgccgcg caccgtggcc
     2041 cggcgcagtt ttcgaccccg gtcgcgcgct ttcccctttc ctggaattcc ggagcctcgc
     2101 acatgaagca gcgtacttcc ccgtcccgtg ccatcgccgc cgtcctgctg tgcggcgcat
     2161 tcgccacgcc gctggccttc gcgcagacgc accaccgcca tcacaaggcc agcaccaccg
     2221 ccgcgaccag caccgacgtc gccggcacca gcaccaccac cgacacctcg gtcagccagt
     2281 ccaccgacat gggcgcgacg cccgccacgc cggcgacccc ggccactccg gcgacgccgc
     2341 cgacttcggc caacatgggc accgacgccg gcacgaatgc cgacgccagc ggtgcaaccc
     2401 ccgccactcc cgcgaccccg gccaccccgg cttcggcggc gatggacgcc tcgggcgcga
     2461 agcaggtcag ctggtccgac ctcgacgccg accacaacgg caacctgagc aagaccgagg
     2521 ccggcgcgct cagcagcctg gcgaacgtgt tcgatgccgc cgacggcaac aaggacggca
     2581 cgctcaccgc cgacgagtac cgcgcgtacc tcaaggcgca gggcaagtaa ccgaccggtc
     2641 cgtcacgaca tcgcgcccgc gacgcggcgc atgcggaaac aggcggcctc ggccgcctgt
     2701 ttccgtttcc ggtgcctgca gcgggggccg cagcgccgat acactcggcc gatgcagcca
     2761 tccgccacgc cgcccggcat ccgcctcgtc gcgttcgacg gcgacgatac cctgtggcgc
     2821 agcgaggact tctaccgcgc ggcgcaacgc gagttcgagt cgatgctcgc gcgccatgtc
     2881 gacctggacg acgtgcatgc gcggctttac gcggtggaaa agcgcaacct cgcgctgttc
     2941 ggctacggcg ccaagggcat gacgctgtcg atgctggagg ccgcctacgc gatcaccggc
     3001 ggccgcatcg ccgccgccga gttgcatcgc atcgtcgaga tcggcaagtc gctgctgcag
     3061 catccggtcg agctgctgcc cggcatccgc gaggcggtcg cgacggtcgc ccgggagcat
     3121 gcggtggtgc tgatcaccaa gggcgacctg ttccaccagg aggcgaaggt ccgcgcgtca
     3181 ggcctgagcg acctgttcca tcgcatcgag atcgtcagcg agaaggatgc cgcgacctat
     3241 gcgcgcgtgc tcggcgaatt cggcctcgtg ccgtcgcagt tcctgatggt cggcaactcg
     3301 ctgcgctcgg acatcgcacc ggtgctggcg ctgggcggat gggcggtgca catgccctac
     3361 cacgtgacct gggtgcacga aacggatgcg gccgagccgg cgccgggcga aacgcgctgg
     3421 cagcgcgtcg acgcgccgtc cgcgctgccg gcggcggtac gcgcgctggc cgaacgcgcg
     3481 ctgcaggccg gcgcggtgcc gccgcgcagt taaaaaaccg ttcacccgtc ttcgcgcatg
     3541 gtgccctcgt ccgcaatcgg gcggacgaag gagactcgca tggctacacc gcttcgctgg
     3601 ttcgctcccg tcgcgctcgc agccggcctc ggcctggcgg cgctggcgcc ggcgcccgcg
     3661 catgcgcaga acgacgccct cgcgctgacg cgccagatcg tcgacatcgc cgacgtggtc
     3721 gtcaacggcg gcgtgccgta ctaccgctac ggccagtacg gcccggccga tcgcctggtc
     3781 gtcgaacgcg actactacgg ccggccggtg tactaccgga tggtgccgcg caccgtctac
     3841 tacacgcagc cgcgggtcgt gtactacgca ccgccgcgcg tggtctatcg cgacgtcccg
     3901 cgcggccatg cctacggcta ctggcgccac cacgatcgcg accgcgactg ggatgacgac
     3961 catcgctggc gccgcgaccg cgatggggac gaccgcgacc gggacggtga tcgcggcggc
     4021 cgccaccacc acgacgacga ttgagcacct cccaggacgg cgcccgcggg cgccgtcttt
     4081 ctgtgcatcg ccgcgcggcg gtaggctatg gcgtccccac ggagcgtacc gccatgatcc
     4141 gaccgctgtc ctccatcctc gctgccgccg cgctcgcgct cgcttccgcg cccagccacg
     4201 ccggcaccat cacctgcaag atgaatttca gcctgtccgg ctggtcggtg ttctatcgca
     4261 cctcctccgg cgagggcgtc gtccactgca gcaacggcca gcgcatggcc gtgcgcatca
     4321 gcgccaaggg cggcggcctg agcttcggca agtcgcgcat caccgacggc cacggcgagt
     4381 tctccggcgt gcacgacatc catgacgtgc tcggcagcta cgccaccgcc gaggcgcacg
     4441 ccggcgccgg caagtcgacc aaggcccagg cgatgaccaa gggcgaggtg tcgctggcgc
     4501 tgaccggcaa gggcgaaggc tgggacgtcg gcgtcgcctt cggcaaattc accctcgagg
     4561 cgcgctgagc gcgccatgcg cgcgc
//
LOCUS       DATIQC010000203         3234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_614290, whole genome shotgun sequence.
ACCESSION   DATIQC010000203 DATIQC010000000
VERSION     DATIQC010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614290"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1101)
                     /gene="tyrS"
                     /locus_tag="VLM17_04260"
     CDS             complement(<1..1101)
                     /gene="tyrS"
                     /locus_tag="VLM17_04260"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005930865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HSR64804.1"
                     /translation="MQHALELIGRGAEEILKRDELETRLAGGRPLRVKAGFDPTAPDL
                     HLGHTVLLNKLRQFQDLGHTAIFLIGDFTGMIGDPTGKNATRKPLTRDDVEANARTYA
                     EQVFKVLDRERTEVRFNSEWFGQMSAADMVRLAAQHTVARMLERDDFAKRYAAQQPIA
                     VHEFLYPLVQGYDSVALKADVELGGTDQKFNLLMGRGLQEHFGQKPQIVLTMPLLEGL
                     DGVQKMSKSLGNYIGIAEPAIDIVTKAMKIDDALMWRWIELLSFEITVAEAAGLQREV
                     GAGALNPRDVKLRLARELAARFHGAAAAEQAVAGWNAAVRGEGDVATLPLQDVAVPAD
                     GLRIAALLTVAGLTPSNSEASRKLKERAVRVDG"
     gene            1298..2713
                     /locus_tag="VLM17_04265"
     CDS             1298..2713
                     /locus_tag="VLM17_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSR64805.1"
                     /translation="MTTSDLQGESRSSRRARLAKLREAALHRKVLAHPAFNGRWTRRH
                     WAHASVFATLGMLVAALVPGFSAPTAAAASTRPGTTTLALALPALPLAQRHGAGDSWQ
                     LITVQRGQNLAALFDELGIPAATLHRLLQQPEAKQALTHLKPGAELGFDLPAEGTLRT
                     LRYDRDDTHRVELSLAGDEVRQKVIERPTETRTVVLSGEVGRSLYRSARKLGLPAKAI
                     DTLTDDIFKYDIDFNDDVGASDRFSVVVDQYWRDGQLVGTGPVQAATFTVRGKLYSGF
                     RFEHDGKTEYYTGDGRPLKRSFIRMPIPYARLTSTFGNRFHPVLGRMRMHEGVDFAAS
                     TGTPIQAAGDARVAFVGQQHGYGNVVILDHGRGYTTLYGHMSRFGKEHVGQRIAQGTV
                     IGYVGMTGLATGPHLHYEFRVNGVHRNPLSVTMPPPEPLQGAALVAFRAQTTTALAKI
                     RRVEDVIYADAGSPRKANKKA"
     gene            2775..>3234
                     /locus_tag="VLM17_04270"
     CDS             2775..>3234
                     /locus_tag="VLM17_04270"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009254 - peptidoglycan turnover [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HSR64806.1"
                     /translation="MADARALFLGLISGTSADGIDVALVEFDAAADGRLGARLHAGRT
                     YPWTPALRTRLVALGQGGDCSALDELGTLDVQVADAFADAALALLHDAGIAPRAVRAL
                     GSHGQTVRHRPAGAAFDGRHPFTMQLGDGHRIAERTGITTVADFRRRDVAA"
BASE COUNT          459 a         1221 c         1083 g          471 t
ORIGIN      
        1 gccgtccacg cgcacggcgc gttccttgag cttgcggctg gcctccgaat tgctcggcgt
       61 caggccggcc acggtgagca gcgccgcgat gcgcaggccg tcggccggca ccgcgacgtc
      121 ctgcaacggc agcgtggcga cgtcgccttc gccgcgcacc gcggcgttcc accccgcgac
      181 cgcctgttcc gccgcggccg caccgtggaa gcgcgcggcc agttcgcgcg cgaggcgcag
      241 cttcacgtcg cgcgggttca gcgcgccggc tcccacctcg cgctgcagcc cggcggcttc
      301 ggcgaccgtg atctcgaagc tgagcagctc gatccagcgc cacatcagcg cgtcgtcgat
      361 cttcatcgcc ttggtgacga tgtcgatcgc cggctcggcg atgccgatgt agttgccgag
      421 cgacttggac atcttctgca cgccgtccag gccttccagc agcggcatgg tcagcacgat
      481 ctgcggcttc tgcccgaaat gctcctgcag gccgcgcccc atcagcaggt tgaacttctg
      541 gtcggtgccg ccgagctcga cgtcggcctt cagcgccacc gagtcgtagc cctgcaccag
      601 cgggtagagg aactcgtgga ccgcgatcgg ctgctgcgcg gcgtagcgct tggcgaagtc
      661 gtcgcgctcg agcatgcgcg cgaccgtgtg ctgggcggcg aggcgcacca tgtcggcggc
      721 ggacatctgc ccgaaccact cggagttgaa gcgcacctcg gtgcgctcgc ggtcgagcac
      781 cttgaacacc tgctcggcgt aggtcctcgc gttggcttcg acgtcgtccc gggtcagggg
      841 cttgcgcgtg gcgttcttgc cggtcgggtc gccgatcatc ccggtgaagt cgccgatcag
      901 gaagatcgcg gtgtggccga ggtcctggaa ctggcgcagc ttgttgagca ggaccgtgtg
      961 gccgaggtgg aggtccggcg cggtcgggtc gaagccggcc ttgacccgca gcggccggcc
     1021 gcccgccagc cgggtttcca gctcgtcgcg cttgaggatt tcttcggcgc cgcggccgat
     1081 cagttcgagg gcatgctgca ccgccgcgtc tccgtgggct ggaaaagcgt gcccgcgctc
     1141 cgggttctgg ccggatccgt gaagcccgcg ttaaaccgaa gttaatctga atgcgtcgaa
     1201 aaatcccaat ccgttcaagg gtttgacgcg cacttttcgc gcgactatgg taccccctcg
     1261 acgcgcccat cacaccgggc gcaggggaga aagggcaatg acgacatccg acctgcaggg
     1321 agagagccgc agcagccggc gcgcgcgcct ggccaagcta cgcgaagcgg ccctgcaccg
     1381 gaaggtgttg gcccatcccg ccttcaacgg ccgctggacc cggcgccact gggcgcacgc
     1441 cagcgtgttc gccaccctcg gcatgctcgt cgccgcgctg gtgccggggt tctcggcgcc
     1501 gaccgccgcg gcggccagca cccgtcccgg caccaccacc ctggcgctgg ccctgccggc
     1561 gctgccgctg gcgcagcgcc acggcgccgg cgacagctgg cagctgatca ccgtgcagcg
     1621 cggccagaac ctcgccgcgc tgttcgacga gctgggcatt ccggccgcca ccctgcaccg
     1681 gctgctgcag cagcccgagg cgaagcaggc gctgacccac ctcaagcccg gcgccgaact
     1741 cggcttcgac ctgcccgccg agggcaccct gcgcaccctg cgctacgacc gcgacgacac
     1801 ccaccgggtc gagctgtcgc tggccggcga cgaggtccgg cagaaggtga tcgagcgccc
     1861 gaccgaaacc cgcaccgtgg tgctcagcgg cgaggtcggc cgttcgctgt accgctcggc
     1921 gcgcaagctc ggcctgccgg ccaaggcgat cgacacgctg accgacgaca tcttcaagta
     1981 cgacatcgac ttcaacgacg acgtcggcgc cagcgaccgc ttcagcgtgg tggtcgacca
     2041 gtactggcgc gacggccagc tggtcgggac cgggccggtg caggcggcga cgttcaccgt
     2101 gcgcggcaag ctctattcgg gcttccgctt cgagcacgac ggcaagaccg agtactacac
     2161 cggcgacggc cggccgctga agcgcagctt catccgcatg ccgatcccgt acgcgcgcct
     2221 gacctccacc ttcggcaacc gcttccatcc ggtcctcggc cgcatgcgca tgcacgaggg
     2281 cgtcgacttc gccgcctcca ccggcacgcc gatccaggcc gccggcgacg cgcgcgtcgc
     2341 gttcgtgggc cagcagcacg gctacggcaa cgtggtcatc ctcgaccacg gccgcggcta
     2401 caccacgctg tacgggcaca tgtcgcgctt cggcaaggaa cacgtcggcc agcgcatcgc
     2461 ccagggcacg gtgatcggct acgtcggcat gaccggcctc gccaccggcc cgcacctgca
     2521 ctacgaattc cgcgtcaacg gcgttcaccg caacccgctg tcggtgacga tgccgccgcc
     2581 cgagccgctg cagggcgcgg cgctggtcgc cttccgcgcg cagaccacca ccgcgctggc
     2641 caagatccgc cgcgtcgagg acgtgatcta cgccgatgcc ggcagcccgc gcaaggccaa
     2701 caagaaggcc tgagcggcgc gattcccctc ttcctgacgc gcccctcggg gcgcgtcgtc
     2761 gtttccggtg accgatggcc gacgcgcgcg cgctctttct cggactgatc tccggcacca
     2821 gcgccgacgg catcgacgtg gcgctggtcg aattcgatgc cgcggccgat ggccgcctcg
     2881 gcgcccgcct gcacgccggc cgcacctatc cgtggacgcc ggcgctgcgc acgcgcctgg
     2941 tcgcgctcgg ccagggcggc gactgcagcg cgctggacga actcggcacg ctcgacgtgc
     3001 aggtcgccga cgccttcgcc gacgcagcgc tggcgctgct gcacgacgcc ggcatcgcgc
     3061 cgcgcgcggt gcgcgcgctc ggctcgcacg ggcagaccgt ccgccatcgc ccggccggcg
     3121 ccgcgttcga cggccgccat cccttcacca tgcagctcgg cgacggccac cggatcgccg
     3181 aacgcaccgg catcaccacc gtcgccgatt tccgccgccg cgacgtggcc gccg
//
LOCUS       DATIQC010000204         7035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_579233, whole genome shotgun sequence.
ACCESSION   DATIQC010000204 DATIQC010000000
VERSION     DATIQC010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7035
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579233"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..502)
                     /gene="nuoE"
                     /locus_tag="VLM17_04275"
     CDS             complement(<1..502)
                     /gene="nuoE"
                     /locus_tag="VLM17_04275"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HSR64807.1"
                     /translation="MRATGNFENARNVDPMVVLTEKTRAHIDHWVAKFPPDRKRSAVL
                     QGLHAAQEQNGGWLSDELIAAVARYLGLPPVWAYEVATFYSMFETEKVGRHNVAFCTN
                     ISCWLNGAEQLVAHAERKLGCRLGESTSDGRIFLKREEECLAACCGAPMMVINGHYHE
                     KLTTQKV"
     gene            complement(516..1826)
                     /locus_tag="VLM17_04280"
     CDS             complement(516..1826)
                     /locus_tag="VLM17_04280"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HSR64808.1"
                     /translation="MNASIHPSSLPFASNAAEAQKEIRNYSLNFGPQHPAAHGVLRLI
                     LEMDGEVVQRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIE
                     TLLGIEPTERALWIRTMFDEITRILNHLMWVGSNALDLGAMAVFLYAFREREELMDVY
                     EAVSGARMHATYYRPGGVYRDLPAHMPQYKESPWRKGGKLKRFNEWREGSMLDYLDAF
                     TSDFPRRVDEYETLLTDNRIWKQRTVGIGVVPPEQALAWGMTGPMLRGSGIAWDLRKK
                     QPYAKYAEVDFDIPVGVQGDCYDRYLVRVAEMRQSNRIIRQCVQWLRANPGPVMIDNF
                     KVAPPSREEMKDDMEALIHHFKLFSEGYCVPPGETYAAVEGPKGEFGVYLVSDGANKP
                     FRMKVRAPDFAHLSSMDTVVRGHMLADVVAMIGTYDIVFGSIDR"
     gene            complement(1916..2644)
                     /locus_tag="VLM17_04285"
                     /pseudo
     CDS             complement(1916..2644)
                     /locus_tag="VLM17_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005927494.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
     gene            complement(2646..3218)
                     /locus_tag="VLM17_04290"
     CDS             complement(2646..3218)
                     /locus_tag="VLM17_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_042462673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HSR64809.1"
                     /translation="MGVIQTIEGLMNNPLPEGRVDDILRPEGDNPLLDRGFVTTTSDA
                     LLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRFGVVFRPSPRQSDVMIVAGTLV
                     NKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP
                     TAEALVYGILQLQKKIRRATNFGADKTGLR"
     gene            complement(3255..3611)
                     /locus_tag="VLM17_04295"
     CDS             complement(3255..3611)
                     /locus_tag="VLM17_04295"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HSR64810.1"
                     /translation="MLAEYLPTLLFLLVAAGIGVALIVVGNVLGPKRPTAEKLSPYEC
                     GFAAFEDARMRFDVRYYLIAILFIVFDLEIAFVFPWALVFRTLGPFGLVEMGVFLALL
                     VIGFAYVWKKGALEWE"
     gene            3921..5381
                     /gene="zwf"
                     /locus_tag="VLM17_04300"
     CDS             3921..5381
                     /gene="zwf"
                     /locus_tag="VLM17_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014401572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HSR64811.1"
                     /translation="MNDAASLLTIFGASGDLARRMLLPSLYGLEADGLLPGRLRVLGT
                     ARSEMDDEGFRRFVADAVGAHVPAGERDPAVLERLQRRLAYQPASVDDAGSMRRLGDA
                     IGTAAGGDIVYHLSTAPRWYAPICDALGALGLGGAGTRVLLEKPIGKDLASATAINDG
                     VARVFDEERVFRVDHYLGKEGVQNLLALRFGNGLFEPLWNARHVEQVQVTVAETVGVE
                     GRGDYYDESGATRDMLQNHLLQLLCLVAMEPPAQFDANAVRNEKLKVLQSLRPIGAAD
                     VRGETALGQYVAGALGGQAVPGYLEELGRASATETFVALRAHVDNWRWSGVPFYLRTG
                     KRLPARVTEIALQFRPVPHSIFASGGAQAQPNVLVIRLQPEERIELRLMSKTPGLDRA
                     GLRLSEVALDLDMHEEFASLRRRPAYERLYLDAIENSGTLFVRRDEVEAAWRWIDSIH
                     AGWTRAGMRPEPSPAGTWGPPGTLLLAGRHGHAWRA"
     gene            5381..>7035
                     /gene="edd"
                     /locus_tag="VLM17_04305"
     CDS             5381..>7035
                     /gene="edd"
                     /locus_tag="VLM17_04305"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008437711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HSR64812.1"
                     /translation="MGALHPVVAEVTARIRERSQALRADYLARMDAARQAGPARLRLG
                     CGNLAHGFAASGTDKPRLRDGRGAHLGIVTAYNDMLSAHQPMEHYPTLIRAAAREAGG
                     SAQVAGGVPAMCDGVTQGRAGMELSLFSRDTIALATAVSLSHDMFDGALMLGVCDKIV
                     PGLLIGALSFGHLPVAFVPAGPMPSGIPNKEKARVRQRYATGDATREELLEAEAASYH
                     TGGTCTFYGTANSNQMLMEVMGLHVPGSAFVPPGTALRDALTVAATQCALRASALGDA
                     PAPLARTLDEKAIVNAMVGLAATGGSTNHAIHLVAIARAAGLAIDWDDLDALSRATPL
                     LARIYPNGSADVNHFHAAGGLGFVIRELLDAGLLHGDIRCVHGGDLRAQAREPFLDGT
                     TLRWRDPPRRSLDPSVLRGMDDPFDREGGLRRLQGNLGRAIVKVSAVAPQLRAIRAPA
                     RVFDSQDALLDAFRAGALAGDFVAVVRGQGPRANGMPELHKLTPTLAAMQDRGQRVAL
                     LTDGRMSGASGKVLAAIHVVPEAVDAGPISRLRDGDLVRIDAEA"
BASE COUNT         1016 a         2507 c         2487 g         1025 t
ORIGIN      
        1 cgaccttctg ggtcgtgagc ttctcgtggt agtgcccgtt gatgaccatc atcggcgcgc
       61 cgcagcaggc ggccaggcat tcctcctcgc gcttgaggaa gatgcggcca tcgctggtgg
      121 attcgccgag ccggcagccg agcttccgct cggcatgcgc gaccagctgc tcggcgccgt
      181 tgagccagca gctgatgttg gtgcagaagg cgacgttgtg gcggccgacc ttctcggtct
      241 cgaacatcga gtagaaggtc gccacctcgt acgcccacac cggcggcagg ccgaggtacc
      301 tggcgaccgc ggcgatgagt tcatcgctca gccagccgcc gttctgctcc tgcgcagcat
      361 gcaggccctg cagcacggcc gagcgcttgc ggtcgggcgg gaacttggcc acccagtggt
      421 cgatgtgcgc acgcgtcttc tccgtcagca ccaccatcgg gtcgacgttg cgcgcgttct
      481 cgaaatttcc ggtcgctctc attcctgtcc tgccattacc ggtcgatgct gccgaacacg
      541 atgtcgtagg taccgatcat cgccaccacg tcggccagca tgtggccgcg caccaccgtg
      601 tccatcgacg acaggtgcgc gaagtcgggc gcgcgcacct tcatgcggaa cggcttgttg
      661 gcgccgtcgc tgaccaggta cacgccgaac tcgcccttcg ggccttccac cgccgcgtag
      721 gtctcgcccg gcggcacgca atagccttcg gagaacagct tgaagtggtg gatcagcgct
      781 tccatgtcgt ccttcatctc ctcgcgggag ggaggcgcga ccttgaagtt gtcgatcatc
      841 acggggccgg ggttggcccg cagccactgc acgcactggc ggatgatgcg gttggactgg
      901 cgcatctcgg cgacgcgcac gaggtagcgg tcgtagcagt cgccctgcac gccgaccggg
      961 atgtcgaagt cgacctcggc gtacttggcg tagggctgct tcttgcgcag gtcccaggcg
     1021 atgcccgagc cgcgcagcat cggcccggtc atgccccagg ccagcgcctg ctccggcggc
     1081 accacgccga tgccgacggt gcgctgcttc cagatgcggt tgtcggtgag cagcgtctcg
     1141 tactcgtcga cccgcctggg gaaatcgctg gtgaaggcgt cgaggtaatc cagcatcgac
     1201 ccttcgcgcc actcgttgaa gcgcttgagc ttgccgccct tgcgccaggg cgattccttg
     1261 tattgcggca tgtgcgccgg caggtcgcgg tagacgccgc cggggcggta gtaggtcgcg
     1321 tgcatgcgcg cgccgctgac cgcctcgtac acgtccatca gttcctcgcg ctcgcggaac
     1381 gcgtacagga acaccgccat agcgccgagg tcgagcgcgt tcgaacccac ccacatcagg
     1441 tggttcagga tgcgcgtgat ctcgtcgaac atcgtgcgga tccacagcgc gcgctcggtc
     1501 ggctcgatcc cgagcagcgt ctcgatggcg cgcacgtagg cgtgctcgtt gcacatcatc
     1561 gagacgtagt ccaggcgatc catgtagccg atagactggt tgaacggctt ggactcggcg
     1621 agcttctcgg tgccgcggtg gagcaggccg atgtgcggat cggcgcgctg cacgacctcg
     1681 ccgtccatct ccaggatcag gcgcagcacg ccgtgcgcgg ccggatgctg cgggccgaag
     1741 ttcagcgagt agttgcggat ttccttctgc gcctcggcgg cattgctggc gaagggcagg
     1801 ctggaaggat ggatcgaggc gttcatttca cggctcccgg caccggggtc ggtccggtcg
     1861 agggcttccg ggcatcggcc gggccgagcg tgccgccgac cttgaggtcc ctgccttcgc
     1921 cggcggcggt cgcgtagcgc gcgtcgtcgc ggatcacgcg cggcacgttg acgcgcggct
     1981 cgaccgaggt caccggctcg tagaccacgc gctgccgctc ggcgtcgtaa cggacctcga
     2041 cattgccgat cagcgggaag tccttgcgga acggatggcc gacgaaaccg tagtcggtga
     2101 ggatgcggcg caggtccggg tggccttcga acacgatgcc gtagaggtcg aacgcctcgc
     2161 gctcgaacca gttggcgatc ggccagatgc cggtcaccga cggcaccacc ggcagggagt
     2221 tgtccgggcc gaagcagcgc acgcgcaggc ggcggttgtg ccggatcgac agcagctgca
     2281 ggaccgcggc gtagcgcctg gccggcacgg ccagcgcgcc ctcgccttcc ggctgcgcgg
     2341 cctgcgcgct cgggcgctgg ccgtagccga agcggccggg gccgcgccct tccacgccgc
     2401 ggctgaagcc ttccgaggag acgttcgtgt cccactcgtc ggtgccgtag ccgaggtagt
     2461 cgatgccgct gacgtcgatc agctgctcga agccgaactc gtcgcgcagc gcgaggcagc
     2521 cggcgtggta gtcggcggcg tcgagcacga tgccgacctc gccgcgaggc aggtcgacgg
     2581 tgacctcggc gccggcgaaa cgcgcgcgca ggcggtcggc gaaagcattg gcggtctcgg
     2641 ccatgtcagc gcaggcccgt cttgtcggcg ccgaagttgg tcgcgcggcg gatcttcttc
     2701 tgcagctgca ggatgccgta gaccagcgcc tcggcggtcg gcgggcagcc cggcacgtag
     2761 atgtccaccg gcacgatgcg gtcgcagccg cgcacgacgg agtacgaata gtggtagtag
     2821 ccgccgccgt tggcgcagct gcccatcgag atcacccact tggggtcggg catctggtcg
     2881 tagaccttgc gcagcgccgg cgccatcttg ttgaccaggg tgccggccac gatcatcacg
     2941 tccgactggc gcggcgacgg gcggaacacc acgccgaagc ggtccaggtc caggcgcgcg
     3001 gcgccggcgt gcatcatctc caccgcgcag cacgccaggc cgaaggtcat cggccacatc
     3061 gagccggtgc gcgcccagtt gagcagcgcg tccgaggtgg tggtgacgaa gccgcggtcg
     3121 agcagcgggt tgtcgccttc gggcctgagg atgtcgtcga cccggccttc cggcaacggg
     3181 ttgttcatca gcccttcgat ggtctggatg acgcccatgt cagatcgacc ctccgcggcg
     3241 cgcaatggac tgcatcactc ccactccagc gcccccttct tccacacgta ggcgaagccg
     3301 atcaccagca gcgccaggaa cacgcccatc tcgaccaggc cgaaggggcc gagcgtgcgg
     3361 aacacgagcg cccacggaaa cacgaaggcg atctcgaggt cgaacacgat gaagaggatg
     3421 gcgatcaggt agtagcgcac gtcgaagcgc atgcgcgcgt cctcgaacgc ggcgaagccg
     3481 cattcgtagg gcgagagctt ctcggcggtc ggccgcttgg ggccgagcac gttgccgacc
     3541 acgatcaggg ccacgccgat gccggcggcg acgagcagga acaacagggt cggcaggtat
     3601 tcggccagca cgcgcacgcc tcatggggtc tgtcagcgcc ggtggcggcg cggcccgggc
     3661 gggctgcgcc ggactcctcc ggctggacat cggcggtcgc gcagcgctgc ggccttgcgg
     3721 ccatggcgaa cgaagccacc gaaacctcgg cattttagac ggcgacgcgc ggcgatggct
     3781 agggcggcgc cggtgcggcc gctggcggcc actccggggg ccgcatgccg gagcaccggc
     3841 ggcgcgcagg caggaatgtg cccccgacgt gaaatcgtat gcacgaaagg cgtgcacgga
     3901 gcggggttta cgcttcggcg atgaacgacg cggccagcct cctcaccatc ttcggcgcat
     3961 ccggcgacct cgcccggcgc atgctgctgc cctcgctgta cgggctggag gccgacggcc
     4021 tgctgcccgg gcgcctgcgc gtgctcggca ccgcgcgcag cgagatggac gacgaaggct
     4081 tccgccgctt cgtcgccgac gcggtcggcg cccacgtgcc cgcgggcgag cgcgacccgg
     4141 cggtgctgga acgcctgcag cgccgcctcg cctaccagcc ggcctcggtc gacgacgccg
     4201 gttcgatgcg ccggctcggc gacgcgatcg gcaccgccgc cggcggcgac atcgtctacc
     4261 acctgagcac cgcgccgcgc tggtacgcgc cgatctgcga cgcgctcggc gcgctggggc
     4321 tcggcggcgc gggcacgcgg gtgctgctgg aaaagcccat cggcaaggac ctggcgagcg
     4381 cgaccgccat caacgacggc gtggcgcgcg tgttcgacga ggaacgcgtg ttccgcgtcg
     4441 accactacct cggcaaggaa ggcgtgcaga acctgctcgc gctgcgcttc ggcaacggcc
     4501 tgttcgagcc gctgtggaac gcgcgccacg tcgagcaggt gcaggtcacg gtcgccgaga
     4561 cggtcggcgt cgagggccgc ggcgactatt acgacgagtc cggcgccacc cgcgacatgc
     4621 tgcagaacca cctcctgcag ctgctgtgcc tggtggcgat ggagccgccc gcgcagttcg
     4681 acgcgaacgc ggtgcgcaac gagaagctca aggtgctgca gtcgctgcgc ccgatcggcg
     4741 cggccgacgt gcgcggcgaa accgcgctcg gccagtacgt ggcgggcgcg ctcggcggcc
     4801 aggccgtgcc cggctacctc gaggaactcg ggcgggccag cgccaccgag accttcgtcg
     4861 ccctgcgcgc gcacgtcgac aactggcgct ggtcgggggt gccgttctac ctgcgcaccg
     4921 gcaagcggct gccggcgcgg gtcaccgaga tcgcgctgca gttccggccg gtgccgcact
     4981 ccatcttcgc cagcggcggc gcgcaggcgc agccgaacgt gctggtgatc cggctgcagc
     5041 cggaggagcg catcgagctg cggctgatga gcaagacccc gggcctcgac cgcgcaggcc
     5101 tgcggctgtc ggaggtcgcc ctcgacctcg acatgcacga ggaattcgcc agcctgcgcc
     5161 ggcgccccgc ctacgagcgg ctgtacctcg acgccatcga gaacagcggc acgctgttcg
     5221 tgcgccgcga cgaggtcgag gccgcgtggc gctggatcga ctccatccac gccggctgga
     5281 cacgggcggg catgcgtccc gagccctctc cggccggcac ctggggaccg cccggcacgc
     5341 tgctgctggc cggccgccac ggccacgcgt ggcgggcgtg atgggcgcgc tgcacccggt
     5401 cgtcgccgag gtcaccgcgc gcatccgcga gcgcagccag gcgctgcgcg ccgactacct
     5461 cgcccggatg gacgccgcgc gccaggcggg ccccgcccgc ctgcgcctgg gctgcggcaa
     5521 cctcgcccac gggttcgccg ccagcggcac cgacaagccg cgcctgcgcg atggccgcgg
     5581 cgcgcacctg ggcatcgtca ccgcctacaa cgacatgctt tcggcgcacc agccgatgga
     5641 gcattacccg accctgatcc gcgccgccgc gcgcgaggcc ggcggcagcg cgcaggtcgc
     5701 cggcggcgtg ccggcgatgt gcgacggcgt cacccagggc cgcgccggca tggagttgtc
     5761 gctgttctcg cgcgacacca tcgcgctggc gaccgccgtg tcgctctcgc acgacatgtt
     5821 cgacggcgcg ctgatgctcg gcgtctgcga caagatcgtg ccgggcctgc tgatcggcgc
     5881 cctctccttc ggccacctgc cggtggcgtt cgtgcccgcc gggccgatgc cctccggcat
     5941 ccccaacaag gaaaaggcgc gcgtgcgcca gcgttacgcc accggcgacg cgacgcgcga
     6001 ggaactgctg gaggccgaag ccgcctcgta ccacaccggc ggcacctgca ccttctacgg
     6061 caccgccaat tccaaccaga tgctgatgga ggtgatgggc ctgcacgtgc cgggcagcgc
     6121 cttcgtgccg ccgggaaccg cgctgcgcga tgccctcacc gtcgccgcga cgcagtgcgc
     6181 gctgcgcgcc agcgcgctcg gcgacgcccc cgcgccgctc gcacgcacgc tcgacgagaa
     6241 ggcgatcgtc aacgccatgg tcggcctcgc cgcgaccggc ggctcgacca accacgcgat
     6301 ccacctggtc gcgatcgcgc gcgccgcggg cctcgccatc gactgggacg acctcgacgc
     6361 gctctcccgc gccacgcccc tgctggcgcg catctatccc aacggcagcg ccgacgtgaa
     6421 ccacttccac gccgccggcg gcctgggctt cgtgatccgc gagctgctcg acgcaggcct
     6481 gctgcacggc gacatccgct gcgtgcacgg cggcgacctg cgcgcgcagg cgcgcgagcc
     6541 cttcctcgac ggcaccacgc tgcgctggcg cgatccgccc cggcgctcgc tcgacccctc
     6601 ggtgctgcgc ggcatggacg atccgttcga ccgcgaaggc gggctgcgcc ggctgcaggg
     6661 caacctcggc cgcgcgatcg tcaaggtgtc ggcggtggcg ccgcagctgc gcgcgatccg
     6721 cgcgccggcg cgggtattcg attcgcagga cgcgctgctg gacgcgttca gggccggtgc
     6781 gctcgccggg gatttcgtcg cggtggtgcg cggccagggc ccgcgcgcca acggcatgcc
     6841 cgagctgcac aagctgacgc cgacgctggc ggcgatgcag gaccgcggcc agcgcgtcgc
     6901 cctgctcacc gacgggcgca tgtcgggcgc gtcgggcaag gtgctggcgg cgatccacgt
     6961 cgtcccggaa gccgtggatg ccggcccgat ctcacgcctg cgcgacggcg acctggtgcg
     7021 catcgacgcc gaggc
//
LOCUS       DATIQC010000205         1843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_225511, whole genome shotgun sequence.
ACCESSION   DATIQC010000205 DATIQC010000000
VERSION     DATIQC010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225511"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..1430)
                     /gene="secY"
                     /locus_tag="VLM17_04310"
     CDS             complement(78..1430)
                     /gene="secY"
                     /locus_tag="VLM17_04310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HSR64813.1"
                     /translation="MARGGNAANLGGGLGKFTELRQRLLFVVGALIVYRIGCYIPVPG
                     VNPQAMLQLMDAQKGTIVDMFNMFSGGALRRFSLFALNVVPYISSSIIIQLMVQILPS
                     LKAIQKEGESGRRKITQWSRIGAIPLAVFQSAGIAMALQHSGAQNGIPVVYAPGMGFI
                     LTAVVSLTAGTMFLMWLGEQVTERGIGNGVSLIIFAGIVAGMPAAVLGTLEQARNGDI
                     SALSVIAILVVVLAATFFVVFMESGQRRITVNYARRQGGRSAYMNQSSFLPLKLNMSG
                     VIPPIFASSIVMFPATASTWFGQTGGSGFQTTLQKISQALSPGEPLHMILYGALIIGF
                     AFFYTALVFNSQETADNLKKSGALIPGIRPGKATAEYIDGVLTRLTAAGAVYLTLVCL
                     LPEVLRSRLGASFYFGGTSLLIVVVVVMDFIAQIQAHLMSHQYESLLKKANLKGRGAR
                     "
     gene            complement(1437..>1843)
                     /gene="rplO"
                     /locus_tag="VLM17_04315"
     CDS             complement(1437..>1843)
                     /gene="rplO"
                     /locus_tag="VLM17_04315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HSR64814.1"
                     /translation="ERVRVGRGIGSGLGKTAGRGHKGSFARSGKGKIKAGFEGGQMPM
                     QRRLPKIGFRSKMANDTAEVLLYQLDKLPAGEIDFAALRAAKLVPATAKQAKIVKKGE
                     ISKKFVLKGLLATAGARAAIEAAGGQLVEAGE"
BASE COUNT          304 a          640 c          606 g          293 t
ORIGIN      
        1 tgccggttcg cgcgttcgtc gaaccggcgg ttgtcacttg ccccgcaacg gatgcgggga
       61 cggctgcgcg gccccgctta gcgggcgcca cgccccttga ggttggcctt cttcagcagg
      121 ctctcgtact ggtgcgacat caggtgcgcc tggatctgcg cgatgaagtc catcaccacc
      181 accaccacga tcagcagcga ggtgccgccg aagtagaacg aggcgccgag cctgctgcgc
      241 agcacttccg gcagcaggca gaccagggtg aggtagaccg cacccgccgc ggtcagccgc
      301 gtcagcacgc cgtcgatgta ctccgcggtc gccttgcccg gccggatgcc cgggatgagc
      361 gcgcccgact tcttgaggtt gtcggccgtc tcctgcgagt tgaagaccag tgccgtgtag
      421 aagaacgcga agccgatgat cagcgcgccg tacaggatca tgtgcagcgg ctcgcccggc
      481 gaaagcgcct ggctgatctt ctgcagcgtg gtctggaagc ccgaaccgcc ggtctggccg
      541 aaccacgtcg acgccgtcgc cgggaacatc acgatgctgg aggcgaagat cggcgggatc
      601 acgcccgaca tgttgagctt gagcggcagg aacgaggact ggttcatgta cgcgctgcgg
      661 ccgccctgcc ggcgcgcgta gttcaccgtg atgcggcgct ggccgctctc catgaacacc
      721 acgaagaacg tcgccgcaag caccacgacc aggatcgcga tcaccgacaa cgcgctgatg
      781 tcgccgttgc gcgcctgctc cagcgtgccg agcacggcgg ccggcatgcc ggcgacgatg
      841 cccgcgaaga tgatcagcga cacgccgttg ccgatgccgc gctcggtgac ctgctcgccc
      901 agccacatca ggaacatggt gcccgcggtc agcgagacca ccgcggtcag gatgaagccc
      961 atgccgggcg cgtacaccac cgggatgccg ttctgcgcgc ccgagtgctg cagcgccatc
     1021 gcgatgccgg ccgactggaa gaccgccagc gggatcgcgc cgatgcgcga ccactgggtg
     1081 atcttgcggc gtcccgactc gccctccttc tggatcgcct tcaggctggg caggatctgc
     1141 accatcagct ggatgatgat cgacgaggag atgtacggca ccacgttcag cgcgaacagg
     1201 ctgaagcggc gcagcgcacc accggagaac atgttgaaca tgtccacgat ggtgcccttc
     1261 tgcgcgtcca tcagctgcag catcgcctgc gggttgacgc ccggcacggg gatgtagcag
     1321 ccgatgcggt agacgatcag cgcgccgacc acgaacagca ggcgctggcg gagctcggtg
     1381 aacttgccga gcccgccgcc gaggttagcc gcgttgccgc ctcgcgccat gcgcgcttac
     1441 tcccccgctt ccacgagctg gccgccagcg gcttcgatcg ccgcgcgggc gccggccgtg
     1501 gccagcaggc ccttgagcac gaacttcttg ctgatctcgc ccttcttgac gatcttcgcc
     1561 tgcttggcgg tcgccggcac cagcttggcg gcgcgcagcg cggcgaagtc gatctcgccg
     1621 gccggcagct tgtccagctg gtacagcagc acttcggcgg tgtcgttcgc catcttcgag
     1681 cggaaaccga tcttcggcag gcgacgctgc atgggcatct ggccgccttc gaagccggcc
     1741 ttgatcttgc ccttgccgct gcgcgcgaac gaacccttgt ggccgcggcc agcggtcttg
     1801 ccgaggcccg aaccgatacc acgaccaacg cggacgcgct cct
//
LOCUS       DATIQC010000206         8182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_579344, whole genome shotgun sequence.
ACCESSION   DATIQC010000206 DATIQC010000000
VERSION     DATIQC010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8182
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579344"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(11..1561)
                     /locus_tag="VLM17_04320"
                     /pseudo
     CDS             complement(11..1561)
                     /locus_tag="VLM17_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017915470.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
     gene            complement(1724..1930)
                     /locus_tag="VLM17_04325"
     CDS             complement(1724..1930)
                     /locus_tag="VLM17_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008215655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSR64815.1"
                     /translation="MQYGTVKWFNDAKGFGFIAPEDGSADVFVHYSAINSKGFRSLQE
                     GQRVSYEVVQGPKGAQAAGVAPAA"
     gene            complement(2100..2861)
                     /locus_tag="VLM17_04330"
     CDS             complement(2100..2861)
                     /locus_tag="VLM17_04330"
                     /EC_number="2.4.2.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012480968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioinosine phosphorylase"
                     /protein_id="HSR64816.1"
                     /translation="MTTSQPIDLAVIGGTGVYALAELEGVEARTPETPYGAASGPIRI
                     GTLAGRRIAFLARHGEGHGVPPHRINYRANLAALQQAGARRVLALNTVGGITERYGPR
                     VLACVDQLIDYTWGRISTLCEEDGTDVLHVDFGEPYTPALRRAILEAAARTGVEVVDG
                     GCYGATQGPRLETRAEIARLRRDGCDVVGMTGMPEAGLAREFGLDYASLAIVANWAAG
                     AGPDPDEVITLDDVLANVAAASAGVARVLRALVAD"
     gene            complement(2912..3466)
                     /locus_tag="VLM17_04335"
     CDS             complement(2912..3466)
                     /locus_tag="VLM17_04335"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /protein_id="HSR64817.1"
                     /translation="MNPPRLADALANADLVHDREAIGRAVEAMALRIRNDYAGDVPVF
                     LTVMHGGLPFAAQLALAIGARGLDLEMDYLHATRYRGATSGGELAWKHRPATPLRGRR
                     VLLVDDIVDEGHTLAAVRAWCRAEGARDVRIAALAVKRHDRCVAGLSADYAGVDVPDR
                     YVFGYGMDYHEQGRNLPGIYALRA"
     gene            complement(3463..4458)
                     /gene="nagZ"
                     /locus_tag="VLM17_04340"
     CDS             complement(3463..4458)
                     /gene="nagZ"
                     /locus_tag="VLM17_04340"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HSR64818.1"
                     /translation="MLVIGVAGTELTARERDWLQHDACAGVILFARNFASKAQVAELS
                     QAIREAAPRPQLVCVDQEGGRVQRFRDGYSAFPPLEKFDALYRRDRDAALRLAEEHAW
                     LMASEVRATGVDLSFAPVVDLGRGNRAIGDRAFSADPQVVAEFTRAYVRGMHSAGMAA
                     TLKHFPGHGSVLEDTHYDTAVDDRPLEQIRALDLVPFAAGIDAKADAVMMAHVVYPQV
                     DPEPAGYSKRWIEDILRKEMGFRGVVFSDDIGMAAAFSAGGVKARIDAHLDAGCDVVL
                     VCHPDLVEESLAAVQDRRLNTAALVGLIGRGPMGWDGLLADARYAAAQQRLGDLA"
     gene            complement(4463..4984)
                     /locus_tag="VLM17_04345"
     CDS             complement(4463..4984)
                     /locus_tag="VLM17_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HSR64819.1"
                     /translation="MPLEIERKFLVTGPAWRQAAHAVIPMAQGYLNDRATVDGGAMRA
                     SVRVRIAGDDAFLNLKSRELGHTRQEFDYPIPVVDARALLALCVGGVIDKRRHLVDHA
                     GHTWEVDEFLGDNAGLVVAEIELGHADEAFERPDWLGVEVTDTPRYYNLALASRPYSQ
                     WSEAERAATDVKE"
     gene            complement(5063..6454)
                     /gene="rlmD"
                     /locus_tag="VLM17_04350"
                     /pseudo
     CDS             complement(5063..6454)
                     /gene="rlmD"
                     /locus_tag="VLM17_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010380519.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
     gene            complement(6535..7140)
                     /locus_tag="VLM17_04355"
     CDS             complement(6535..7140)
                     /locus_tag="VLM17_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HSR64820.1"
                     /translation="MKRLMGMPVMAALVLSACVTINVYFPAAEAKEAAKQFVEKVIGP
                     DAEQPAPPAPAEKKDGGGMAAEFHFDPLMLLGIGQAQAQAQDFKLDSPAVQAIESRID
                     ARFDSQLRGGFEAGALGFSGDGLVVVRDATKLQLKDRVAVNTAVADDNRDRKALYREA
                     AVANGHPEWEGQIRQVFAKQWIAAAHKGWWYQDASGAWKQK"
     gene            complement(7170..>8182)
                     /locus_tag="VLM17_04360"
     CDS             complement(7170..>8182)
                     /locus_tag="VLM17_04360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64821.1"
                     /translation="TLHDIDVGDARGRFRFDRLAGTPRFSATTPVEGELRWNGGELYG
                     IAFGAATLPMASRDGVLRLRQPVDVPMLGGVLRFEGMTVQPPAGGNGADVRFGLGVER
                     LDIGRLAKTFELPPFQGQLSGHIPAARYHADTLTFDGGLVMQLFGGAVNVSALSLERP
                     FGTAPSLSADLALEDIDLQSLTGVFDFGSISGKLDGRIDGLRLVDWTATAFDADLHTD
                     PHHRVRQRISQRAVQNISSVGDASFVTSLQGRLIGLFKDFGYRRIGISCRLANGVCTM
                     GGLDSRGQAEGAHSRGGFTIVEGAGLPHLTVVGFNRQVDWPTLLERLAAATQGNVKPV
                     VE"
BASE COUNT         1122 a         2905 c         2981 g         1174 t
ORIGIN      
        1 ggctgcgtca gaaggcgtcg gcggcggggc tgcccgcgcg cagcaacacg ccggcctgta
       61 gcgcgagcgc gagccattcc accagcgagc gcgcctcggc ttcgtcggac gcattgccgt
      121 cgagctcggc cagcagcggc agcaccgcca tgtcgtagtc ggtgtcgcgg ccccgccccg
      181 cctccagctc gtgccgcagc gcctcgcggg tcgccggttc gcgcgccagc gcgcgcagca
      241 cgtccaggca ctggatgttg ccgctgcctt cccagatcga attgaggggc gcctgccggt
      301 acagccgcgg cagcagcgac tcctcgacat agcccgcgcc gccgaggcat tcctgcgcct
      361 cgttgacgaa cgccggcgcg cgcttgcagg tccagtactt gccgatcgcg gtggcgacgc
      421 gggcgaaggc ggcttcgcgc cggccggcag cggtatcgtc gtgcgccgcc gcatcgacgg
      481 cgcgcgcgac gcgcagcgag aacgcgagcg ccgcctccca ttccagcgcg aggtcggcga
      541 gcacgttgcg catcagcggc tgcccggcga gcggcttgcc gaaggcggtg cggtgccggc
      601 agtggtggat cgcctgcgcc agcgccatgc gcatttccgc ggccgcgccg agcatgcagt
      661 ccagccgggt gagcatgacc atctcgagga tggtggcgac gccgcggcct tccgcgccga
      721 cccgccaggc gcgcgcgccg gtgaactcga tctccgacga ggcattgctc cagtcgccga
      781 gcttgtcctt cagccgcagc aggcggaacg cgttcctggc gccatcgggc aagcggcgcg
      841 gcatcagcag gcaggtgagg ccgcccggcg cctgcgccag caccaggaag ccgtcggaca
      901 tcggcgcgga caggaaccac ttgtgcccga ccagcgcata gctgccgtcc ggctgcggcg
      961 tcgccgtcgt cgtgttcgcg cgcacgtcgc tgccgccctg cttctcggtc atgcccatgc
     1021 cgatggtcac gccggccttc tgcgcgatcg gcacgtcgcg gccgtcgtag tgcggcgcgg
     1081 ccgccttgtc ggcccattcg cgcaatgccg gctcgcgccg cagcaccggc accgccgcgt
     1141 gcgtcatcgt cagcgggcag ctggtgccgg gctcgacctg gtggtgcagg tagctcagcg
     1201 ccgcgcgcgc gacatgcgcg cccggccggc catcgcgcca tgagagcccg gcgacgccgt
     1261 gttcgatcgc cgcctgcatc agcgcgtggt agttcggatg gaattcgacc aggtcgatgc
     1321 gccggccgaa gcggtcgtgg gtgcgcaggc gcggccggtc gcgatgggcg tcgaacgaca
     1381 acccgtggag cgtgccgccg gccagcgcgc cgaagccggc caggcgcgcc gcgaattcct
     1441 gcccgccctc gcgccgcacc gcctcgcgca gcgcggcatc gtccgcccac aggtcgcgcg
     1501 gcgcgaattc cggcggctgg ttgtcgacga cgtgggtttc gaacggcggc aggtcgggca
     1561 tggcggcgct ccggcaggac tcgattctcg cgcaaacgcg acgccgcggc cccgcgcgcc
     1621 atgtacgtgc cggcgcggca ccggcggtcc ctcgcgtgac caccagccgc ataaaaaaag
     1681 ccccgcctgg gcggggcttt tccaaaggtc tgacgggcga tgctcaggcg gcgggggcga
     1741 cgcctgcggc ctgcgcgccc ttcgggccct gcacgacctc atagctgacg cgctggcctt
     1801 cctgcaggct gcggaaaccc ttcgagttga tcgccgagta atgcacgaac acgtcggcgc
     1861 tgccgtcttc gggagcgatg aaaccgaagc ccttggcgtc gttgaaccac ttcacggtgc
     1921 cgtactgcat aacggtgctg acctcttggt ggatgcgttg gccgtgcgtc ggcgcggggc
     1981 ggccgggacg cacgccgcga gtatgcacgg gcccttgacg ttggcaagag gggccaagtc
     2041 gtgcagcgac ggacggatgc gcggtctgct gcgctgcagc gtgcgcttcc ggtagcggct
     2101 cagtccgcga cgagcgcgcg cagcacgcgc gccacgccgg cactggcggc ggcgacgttg
     2161 gccagcacgt cgtcgagggt gatcacctcg tccggatccg gcccggcgcc cgccgcccag
     2221 ttcgcgacga tggcgaggct cgcgtagtcg aggccgaatt cgcgcgccag gcctgcctcg
     2281 ggcatgccgg tcatgccgac cacgtcgcag ccgtcgcggc gcaggcgggc gatttcggcg
     2341 cgcgtctcca ggcgcggccc ctgggtggcc ccgtagcagc caccgtcgac cacctcgacg
     2401 ccggtgcgag cggcggcttc gaggatcgcg cgccgcagcg cgggcgtata cggctcgccg
     2461 aagtccacgt gcagcacgtc ggtgccgtcc tcttcgcaca gcgtcgagat gcggccccac
     2521 gtgtagtcga tcagctggtc gacgcaggcc agcacgcgcg ggccgtagcg ttcggtgatc
     2581 ccgccgacgg tgttgagcgc gagcactcgg cgcgcgccgg cctgctgcag cgcggcgagg
     2641 ttggcgcggt agttgatccg gtgcggcggt acgccgtggc cttcgccgtg gcgggcgagg
     2701 aaggcgatgc gcctgccggc gagcgtgccg atgcggatcg gcccggacgc cgcgccgtaa
     2761 ggggtctcgg gggtccgtgc ttccacgccc tcgagttccg ccagcgcgta gacgccggtg
     2821 ccaccgatga cggcgaggtc gatgggctgg cttgtcgtca tgtgtcggct ctcgtttccc
     2881 tggtcgtccc gggcagcggg aagctgccgg ctcaggcccg caacgcgtag atcccgggca
     2941 ggttgcgccc ctgctcgtgg tagtccatgc cgtagccgaa cacgtagcgg tccggcacgt
     3001 cgacgccggc gtagtccgcg ctcaagcccg cgacgcagcg gtcgtgccgc ttcacggcga
     3061 gcgcggcgat ccgcacgtcg cgcgcgcctt ccgcgcggca ccacgcgcgc acggccgcca
     3121 gggtatggcc ctcgtcgacg atgtcgtcga ccagcagcac gcggcgcccg cgcagcggcg
     3181 tcgccgggcg gtgcttccag gccagttcgc caccggaggt cgcgccgcgg tagcgggtcg
     3241 cgtgcaggta gtccatctcg aggtcgagcc cgcgcgcgcc gatcgcgagc gccagctggg
     3301 cggcgaacgg aaggccgcca tgcatcaccg tgaggaacac cggcacgtcg ccggcgtaat
     3361 cgttgcggat gcgcagcgcc atcgcctcga ccgcgcgccc gatcgcctcg cggtcgtgca
     3421 cgaggtcggc gttggccagc gcgtcggcga gccgcggcgg gttcatgcga gatcgccgag
     3481 ccgctgctgc gcggccgcgt aacgcgcatc ggcgagcagt ccgtcccagc ccatcggacc
     3541 gcgtccgatc agcccgacca gcgccgcggt gttgagccgg cggtcctgca ccgccgccag
     3601 cgactcctcg acgaggtcgg ggtggcagac cagcaccacg tcgcagccgg cgtccaggtg
     3661 ggcatcgatg cgcgccttga cgccaccggc cgagaacgcc gcggccatgc cgatgtcgtc
     3721 ggaaaacacc acgccgcgga agcccatctc cttgcgcagg atgtcctcga tccagcgctt
     3781 cgaataaccc gcgggctccg ggtcgacctg cggatagacc acgtgcgcca tcatcaccgc
     3841 atcggccttg gcgtcgatgc cggcggcgaa cggcaccagg tcgagcgcgc ggatctgttc
     3901 cagcgggcgg tcgtcgacgg cggtgtcgta atgggtgtcc tcgagcaccg agccgtggcc
     3961 ggggaaatgc ttgagcgtcg ccgccatgcc ggccgaatgc atgccgcgca cgtaggcgcg
     4021 ggtgaactcg gcgaccacct gcgggtcggc cgagaacgcc cggtcgccga tcgcgcggtt
     4081 gccgcggccg aggtcgacga ccggcgcgaa gctgaggtcc acgccggtcg cgcgcacttc
     4141 gctcgccatc agccaggcgt gctcctcggc gaggcgcagc gcggcgtcgc ggtcgcggcg
     4201 atacagcgcg tcgaatttct ccagcggcgg gaacgcgctg tagccgtcgc ggaagcgctg
     4261 cacgcgcccg ccttcctggt cgacgcagac gagctgcggc cgcggcgcgg cctcgcggat
     4321 cgcctgcgac agctcggcca cctgcgcctt cgaggcgaag ttgcgcgcga acaggatgac
     4381 gcccgcgcag gcgtcgtgct gcagccagtc gcgctcgcgc gcggtgagtt cggtgccggc
     4441 cacgccgatc acgagcatcg ccttactcct tgacgtcggt cgccgcgcgt tccgcttcgc
     4501 tccattgcga atacggccgc gaggccaggg ccagattgta gtagcgcggc gtgtccgtga
     4561 cctccacgcc cagccagtcc ggccgttcga aggcctcgtc ggcatggccg agctcgattt
     4621 cggcgaccac cagcccggcg ttgtcgccga ggaattcgtc cacttcccag gtgtggcccg
     4681 cgtgatcgac gaggtggcgg cgcttgtcga tcacgccgcc gacgcacagc gccagcagcg
     4741 cccgcgcgtc gacgaccggg atggggtagt cgaactcctg ccgggtgtgg ccgagctcgc
     4801 gcgacttcag gttgaggaag gcgtcgtcgc cggcgatgcg cacgcgcacc gaggcacgca
     4861 tcgcgccgcc gtcgacggtg gcgcggtcgt tgaggtagcc ctgcgccatc gggatgaccg
     4921 cgtgcgcggc ctggcgccag gccgggccgg tgacgaggaa cttgcgttcg atttcgagag
     4981 gcatgtgggt tggctcaaag aaagacgacg cgcttcgagg ccgcggctcg cgggcgctcg
     5041 ttcaatgctt tcattaccgg tttcatcccc gggccggctc gaacaccgcg atcgattcga
     5101 cgtgcgcggt atgcgggaac atgtccatca cgccggccgc gcgcagcgtc cagccgcgct
     5161 cgctgaccag gtagccggcg tcgcgcgcca gcgaaccggg atggcagctg acgtagacga
     5221 tgcgcttgag gcccttcagc ggcagctgct acagcacggc gtcggcgccg gagcgcggcg
     5281 gatccagcag caggcggtcg aagccggcgc gcatccacgg cttgccggcg aggtcctggg
     5341 ccaggtcggc ggcatggaac tcgacgttgt cgaggccgtt gagcgccgcg ttgtcgcgcg
     5401 cgcgctgcac cagcccggcc tcgccttcga ccccgaccac gtggccaccg atgcgtgcca
     5461 gcggcagggt gaagttgccg aggccgcaga acaggtcgag cacgcgctcg cccggctgca
     5521 cgtccagcag cgccagcgcg cgggcgatca tcgcctcgtt caacttggcg ttgacctgga
     5581 tgaagtcgag cgggcggaag cggaacacga cgtcccaggc cggcaggcgg aacgacagct
     5641 ccggatgctc cggccacagc ggctgcaccg aatcgacgcc gccgggttgc aggaagatcg
     5701 cgaaccggtg cgcctggccg aaggtcgcca gcgccgcgcg atcgcgttcc gacagcggcg
     5761 cgaggtggcg gacggtcagc gcgacgccgt cgaactccgc cgtcggatcg ccggcgatga
     5821 attccacctg cgggatctcg cggcgcccgt ccatgccgtc gatcaaggtt gccagcgcgc
     5881 cgatgcgccc gcccagcgcg gggacgacgg tatggcattc ggacaggtcg gcgacgaagc
     5941 gcgggtcctg ctcgcggaac ccgaccagcg tcttgtcctt cttctccacc cggcgcaccg
     6001 agaaacggcc cttgcggcga tagccccagg ccgcatcggt gagcggctcc agcacttcgc
     6061 gcggcgcgac gtggccgatg cgctcgaggt tctccagcag cacgcgctgc ttggcgtgga
     6121 tctgccggtc ctcggccagg tgctgcagcg cgcagccgcc gcaggtgccg aaatgcgggc
     6181 aacgcggcgc gacgcggtcg ggcgaggcct cgagcacgtc cagcgtgcgc gcctcgtcga
     6241 aggcgcgctg gcggccggtc tgctggacga tgaccgtttc gccgggcaat gcgccgctga
     6301 cgaagacggt cttgccggcg tgcgggccgt cggtgcggcg ggcgacgccg cggccatcgt
     6361 ggctgaggtc gaggatgtcg agctggaacg gggtctggtc gaggcgggcc acggagcgac
     6421 tgcgggaaac ggcgagccgg ctattgtcgc aaatgccgga aagcagacgg cccgcgccgg
     6481 gcgggccgtt gccggacgga aggagcgcgg accgggtgcc ggccgcgccc ggggtcactt
     6541 ctgcttccag gcccccgacg cgtcctggta ccaccagccc ttgtgagcgg cggcgatcca
     6601 ctgcttcgcg aacacctggc ggatctggcc ttcccattcc ggatggccgt tggccaccgc
     6661 cgcctcgcgg tacagcgcct tgcggtcgcg gttgtcgtcg gcgaccgcgg tgttgaccgc
     6721 cacgcggtcc ttgagctgca gcttggtcgc atcgcgcacc accaccaggc cgtcgccgct
     6781 gaagccgagc gcgcccgcct cgaagccgcc gcgcagctgg ctgtcgaagc gcgcgtcgat
     6841 gcgcgactcg atcgcctgca ccgccggcga atcgagcttg aagtcctgcg cctgggcctg
     6901 cgcctggccg atgccgagca gcatcagcgg gtcgaagtgg aactccgccg ccatgccacc
     6961 gccgtccttc ttctccgcgg gcgccggcgg cgcgggctgc tccgcgtcgg ggccgatcac
     7021 cttctcgacg aactgcttgg ccgcttcctt ggcctcggcg gccgggaagt acacgttgat
     7081 cgtcacgcag gcgctcagca ccagcgcggc catgaccggc attcccatca ggcgtttcat
     7141 ccatcctctc cttgcaggtt gattcgtgct cattcgacca ccggcttgac gttgccctgg
     7201 gtcgcggcgg cgagccgctc gagcagggtc ggccagtcga cctggcggtt gaagccgacc
     7261 accgtcaggt gcggcaggcc ggcgccttcg acgatggtaa agccgccgcg tgaatgcgcg
     7321 ccttccgcct gccctcgact gtccagcccg cccatcgtgc agaccccgtt ggcgagccgg
     7381 caggaaatgc cgatccggcg gtagccgaaa tccttgaaca gcccgatcag cctgccctgc
     7441 agcgaggtca cgaaggaggc gtcgccgacg ctggagatgt tctgcaccgc gcgctggctg
     7501 atgcgctggc gcacgcggtg gtgcgggtcg gtgtggaggt cggcgtcgaa ggcggtcgcg
     7561 gtccagtcga ccaggcgcag gccgtcgatg cggccgtcga gcttgccgct gatgctgccg
     7621 aagtcgaaca cgccggtgag cgactgcagg tcgatgtcct ccagcgcgag gtcggcgctg
     7681 agcgagggcg cggtgccgaa cggccgctcg agcgagagcg cggagacgtt caccgcgccg
     7741 ccgaacagct gcatgaccag gccgccgtcg aaggtgagcg tgtcggcgtg gtagcgcgcg
     7801 gcgggaatgt ggccgctgag ctggccctgg aacggcggga gttcgaaggt cttcgccaac
     7861 cggccgatgt cgaggcgctc gacgccgagg ccgaagcgca cgtcggcccc gttgccgccc
     7921 gcgggcggct gcacggtcat cccctcgaag cgcaggacgc cgccgagcat cggcacgtcg
     7981 accggctggc gcaggcgcag cacgccgtcg cggctcgcca tcggcagcgt cgccgcgccg
     8041 aaggcgatgc cgtagagctc gccgccgttc cagcgcaatt cgccctccac cggggtggtg
     8101 gcggagaagc gcggcgtgcc ggccaggcgg tcgaagcgga agcggccccg ggcgtcgccg
     8161 acgtcgatgt cgtgcagcgt gg
//
LOCUS       DATIQC010000207         2185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_49156, whole genome shotgun sequence.
ACCESSION   DATIQC010000207 DATIQC010000000
VERSION     DATIQC010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49156"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..1229
                     /gene="gcvT"
                     /locus_tag="VLM17_04365"
     CDS             114..1229
                     /gene="gcvT"
                     /locus_tag="VLM17_04365"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005931494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HSR64822.1"
                     /translation="MTQKTILNDTHRALGAKMVDFGGWDMPIHYGSQIDEHHAVRQDA
                     GMFDVSHMTVVDLTGARVREFLRRLVANSVDKLKVPGKALYTAMLNGQGGVIDDLIVY
                     YMSEEFFRLVVNAATRDKDLAWITEQARAFDVTVTERPEYGMVAVQGPNARDKVLGLL
                     REDDRARIGKLGRFAAGEATTSDGIPVFVARTGYTGEDGFEVIVPEARTVAFWNALLA
                     AGVKPAGLGARDTLRLEAGMNLYGQDMDETVTPYEAALAWTIALDDQADGKARDFIGR
                     DALEAQMAAGVPRQLVGLVMDEKGVLRHGQKVLTANGEGEVLSGTFSPSLGKAIAFAR
                     IPAGAPGDVRVDIRGREVPVRVVKFPFVREGKPQPGV"
     gene            1300..1695
                     /gene="gcvH"
                     /locus_tag="VLM17_04370"
     CDS             1300..1695
                     /gene="gcvH"
                     /locus_tag="VLM17_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010368686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HSR64823.1"
                     /translation="MSEIPGDLKFLKSHEWARLEGDGKVTVGISDHAQGLLGDLVYVE
                     LPNVGDRVEAGNASAVVESVKAASDVYSPVTGKVVEVNTALADKPETINEDAYGDGWI
                     FVVQAEEPEQLNELLSPDDYAELLEDDDH"
BASE COUNT          342 a          743 c          780 g          320 t
ORIGIN      
        1 ggatcccgtt cgccggcttc ccgctccagg ggacacgtcc gcaccatgcg ccggcgtcgg
       61 gggcgttgcc gcgccccatc tgggataatg gcgttctttg ccccggagcc gccatgaccc
      121 agaagaccat cctcaacgac acccatcgcg ccctcggcgc caagatggtc gacttcggcg
      181 gctgggacat gccgatccac tacggctcgc agatcgacga gcaccatgcc gtgcgccagg
      241 acgccggcat gttcgacgtc tcgcacatga ccgtggtcga cctcaccggc gcgcgcgtgc
      301 gcgagttcct gcgccgcctc gtcgccaact cggtggacaa gctcaaggtg cccggcaagg
      361 cgctgtatac cgcgatgctc aacggccagg gcggggtgat cgacgacctg atcgtctatt
      421 acatgtcgga ggagttcttc cgcctggtgg tcaacgccgc gacccgcgac aaggacctgg
      481 cgtggatcac cgaacaggcc agggccttcg acgtcaccgt caccgagcgc cccgagtacg
      541 gcatggtcgc ggtgcagggc ccgaacgcgc gcgacaaggt gctcggcctg ctgcgcgagg
      601 acgaccgtgc gcggatcggc aagctcggcc gcttcgcggc cggcgaggcg accaccagcg
      661 acggcatccc ggtgttcgtc gcccgcaccg gctataccgg cgaggacggt ttcgaggtga
      721 tcgtgccgga agcgcggacg gtggcgttct ggaacgccct gctggcggcg ggggtgaagc
      781 cggcggggct cggcgcgcgc gacacgctgc gcctggaagc cggcatgaac ctctacggcc
      841 aggacatgga cgagacggtg acgccgtacg aagccgcgct cgcctggacg atcgcgctcg
      901 acgaccaggc cgatggaaag gcgcgcgact tcatcggccg cgatgcgctg gaggcgcaga
      961 tggccgcggg cgtgccgcgc cagctggtcg gcctggtgat ggacgagaag ggcgtgctgc
     1021 gccacggcca gaaggtgctg accgccaacg gcgagggcga ggtgctgtcg ggcacgttct
     1081 cgccgtcgct gggcaaggcg atcgcattcg cccgcatccc ggcgggcgcg cccggcgacg
     1141 tgcgcgtcga catccgcggc cgcgaggtgc cggtgcgggt ggtgaagttc ccgttcgtcc
     1201 gcgagggcaa gccgcagccg ggcgtgtgat ctgcgccgtg tccggcttcg ctacacttag
     1261 cccaccttcc ccaccgaccg cattgcacgg agcagcacga tgagcgagat ccccggcgac
     1321 ctgaagttcc tgaagtccca cgagtgggcc cgcctcgaag gcgatggcaa ggtcaccgtc
     1381 ggcatctcgg accacgccca gggcctgctc ggcgacctgg tctatgtcga gctgcccaac
     1441 gtcggcgacc gcgtcgaagc ggggaacgcg tcggcggtgg tggaatcggt caaggcggct
     1501 tcggacgtgt acagcccggt caccggcaag gtggtggagg tcaacaccgc gctggccgac
     1561 aagccggaaa cgatcaacga ggatgcctac ggcgacggct ggatcttcgt ggtccaggcg
     1621 gaggagcccg agcagctcaa cgagctgctc tcgcccgacg actacgccga gctgctcgag
     1681 gacgacgatc actgacgtcc tgacgtcgtc gggatgcgaa aaggaccggc cccggtggcc
     1741 ggtttttttt tgcccgcggt tgctgcccga cgcgtcggcc acgcggcttc cgcggccgcc
     1801 gaacgtgcga tcggatgcgt cggcgcggac atcgggtgcg ttccggacgc ctcgtcggtt
     1861 cgcgcaattt cgcgcaatca gggtgttgcg gcgcgaaatc cggcacccgc cgcgcaactt
     1921 ttttcggagt gcccgtgccg gcgcgcggaa gcccgcgacg gtgcgcggcg cgggcggcac
     1981 gcaacgcgcc gcatgcgccc gatgcaggtc ggggccttca ggaaacaccg gaaaaaaagc
     2041 gctttcgcta cgggcccgca tccggcgcat cgcgctcccg cgtcgcgagc ggcgcgcgcg
     2101 ccagcggatg cggcgccgcc ttcgtcggca cgcccgccgg cgtcggcggc ggaattcttc
     2161 gccggggttg ttgacagtcg aaaaa
//
LOCUS       DATIQC010000208         5280 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_84790, whole genome shotgun sequence.
ACCESSION   DATIQC010000208 DATIQC010000000
VERSION     DATIQC010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5280)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5280)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5280
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84790"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..509)
                     /locus_tag="VLM17_04375"
     CDS             complement(<1..509)
                     /locus_tag="VLM17_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HSR64824.1"
                     /translation="MRDISRQVRASVLAADWPAPPGVHALTTLRGPAGDSRPPFDRFS
                     FGLRNGDAPDAVAANREMLERGLALPSAPRWLRQVHGTRVVRFDAMADEGGEPEADAA
                     VTAAAGVVLAILTADCLPVVFCADDGSEVGAAHAGWRGLAEGVLEATVAAMHGPPARL
                     LAWLGPAAGP"
     gene            complement(569..1552)
                     /gene="rluD"
                     /locus_tag="VLM17_04380"
     CDS             complement(569..1552)
                     /gene="rluD"
                     /locus_tag="VLM17_04380"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005992848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HSR64825.1"
                     /translation="MSTPEPSHDIRTAQVPANAAGRRFDAVLAELFPEFSRSRLAEWI
                     KDGHARLDGRAVRPRDPVRGGEAVELQVVLAPQTHALAEDIALDILHEDEAVFVIDKP
                     AGLVVHPGAGNPAGTLVNALLHRDPALAALPRAGIVHRLDKDTSGVMVVARTLPAHAA
                     LVAQLSAREVHRQYLAIVVGALVAGGTASAAIDRHPRDRLRMAVREDGREAVTHYRLR
                     ERFRAHTALECRLETGRTHQIRVHMAHLKHPIVGDPLYGGPLKLPRGATPDLLDALRG
                     FRRQALHAEVLEFAHPLTGEPLRCSAPLPADMTGLLQALREDARVHAEEGR"
     gene            1633..2499
                     /locus_tag="VLM17_04385"
     CDS             1633..2499
                     /locus_tag="VLM17_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HSR64826.1"
                     /translation="MTPSKFPRVSLRPALLLVLLAVLAASGCAHFGKGHKKDANEGVP
                     VEELYAKGHRLMVYGNWDGANTVYKRLIAQYPYGPYTEQALMETAYAQYKSGANDDAI
                     SSIDRFIRTYPTHRNIAYLYYLRGLVNSSRDTVFLQRVWKLDASRRDLATPMQAYNDF
                     KTVTERYPNSRYAADARERMSALRNMFARHELETALYYLRRGAWVSAADRAKYLLETY
                     PQSIWQNDAVATLAEAYTRLGNKTLADDARRVLQQNDPNHPWLRGDWPDYPSKLRRLN
                     PFAGERSAVDNH"
     gene            complement(2573..4204)
                     /locus_tag="VLM17_04390"
     CDS             complement(2573..4204)
                     /locus_tag="VLM17_04390"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HSR64827.1"
                     /translation="MTIRIALAQFDFPVGAVHANAGRIAAMIAEARDAYGADLVLFPE
                     LALSGYPPEDLLLRPSFLADCEAALEEIARATHGIVAVVGWPQSAGAIVYNAASVLRA
                     GQVERTYRKRELPNYAVFDERRYFDVDPDQEACVFDVGGVPVGLVICEDLWFAEPLAA
                     TVRAGARLVLVPNASPFERDKHAQRDALIAQRVHESGVGLAYLNLVGGQDALVFDGAS
                     VLADGDGSVYPAARAFEDHWLVAGFDPATRRFTPVAWPVETDEGRDALAWRAVVRGIR
                     DYCGKNGFARVWLGLSGGIDSAVVLALAVDALGADNVTAVRLPSRYTADLSNDLAAEQ
                     CATQGVRLLTLPIERPFEGYLSALSGAFSGQAADVTEENLQSRTRGALLMALSNKFGG
                     LLLTTGNKSEYAVGYATIYGDMCGGYAPLKDLYKTEVYALARWRNTVGGTPVIPPGVI
                     DRPPSAELRENQTDQDSLPPYDVLDAILLRHVDQEQSRAEIVAAGFDAATVDRVLRLV
                     RISEWKRHQAAPGPKVSRRAFGRERRYPISNGYRG"
     gene            complement(4201..4590)
                     /locus_tag="VLM17_04395"
     CDS             complement(4201..4590)
                     /locus_tag="VLM17_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HSR64828.1"
                     /translation="MRVGAKLELARRLRRTMTDAEQALWKRLRFQQAGHRFRRQHPIG
                     PFVVDFACIARRLIVEVDGGQHLGSLTDERRDAFLRTEGYRVLRFWNTDVLQNIDGVL
                     QVILDWLSLTSPHPDLPPQAGEGEGHP"
     gene            complement(4786..>5280)
                     /locus_tag="VLM17_04400"
     CDS             complement(4786..>5280)
                     /locus_tag="VLM17_04400"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005418610.1"
                     /note="Catalyzes the only substrate-level phosphorylation
                     in the TCA cycle; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HSR64829.1"
                     /translation="IITPGACKIGIMPGHIHKPGKVAIVSRSGTLTYEAVKQTTDVGL
                     GQSTCIGIGGDPINGTNFIDALKWFQDDPQTEGIIMVGEIGGSAEEEAAEFIAEYVTK
                     PVVGFIAGASAPKGKRMGHAGAIASGGTGTAEGKFAAMEKAGVTTVKSPGDLGAAIAK
                     RLAK"
BASE COUNT          775 a         1937 c         1836 g          732 t
ORIGIN      
        1 ggccccgcgg ccggccccag ccaggcgagc aggcgcgcgg gcggcccatg catcgcggcc
       61 accgtcgcct ccagcacgcc ctcggcgagg ccgcgccagc ccgcgtgcgc ggcgcccacc
      121 tcgctgccgt cgtcggcgca gaacaccacc ggcaggcagt cggcggtgag gatcgcgagc
      181 accacgccgg cggcggcggt gacggcggca tcggcttcgg gctcgccacc ctcgtccgcc
      241 atcgcatcga agcgcaccac ccgggtcccg tgcacctggc gcaaccagcg tggcgccgac
      301 ggcagcgcga gcccgcgttc gagcatctcg cggttggccg ccaccgcgtc gggcgcgtcg
      361 ccgttgcgca ggccgaacga gaagcggtcg aacggcggcc gcgaatcacc cgcgggcccg
      421 cgcaacgtgg tcagcgcgtg cacgcccggc ggcgccggcc agtcggcggc gagcacgctg
      481 gcacggacct gccgcgagat gtcgcgcatc gccgcgtggt agggggtcgc gcagaagacg
      541 cccggcggcg gcggcttcgg ccagggcatc agcgcccctc ctccgcatgc acgcgcgcgt
      601 cctcgcgcag cgcctgcagc aaccccgtca tgtcggccgg cagcggcgcg ctgcagcgca
      661 gcggctcgcc ggtcagcgga tgggcgaatt ccagcacctc cgcatgcagc gcctggcggc
      721 ggaagccgcg cagggcgtcc agcaggtccg gcgtggcgcc acgcggcagc ttgagcgggc
      781 cgccgtacag cggatcgccg acgatcgggt gcttgaggtg cgccatgtgc acgcggatct
      841 ggtgggtgcg gccggtctcg agccggcatt cgagcgcggt gtgggcgcgg aagcgctcgc
      901 gcaggcggta atgggtgacc gcctcgcggc cgtcctcgcg caccgccatg cgcaggcggt
      961 cgcgcgggtg gcgatcgatc gcggcgctgg cggtgccgcc ggcgaccagc gcaccgacca
     1021 cgatggcgag gtattgccgg tgcacctcgc gcgccgacag ctgggcgacc agcgcggcgt
     1081 gcgccggcag cgtgcgcgcg acgaccatga cgcccgaggt gtccttgtcc agccggtgca
     1141 cgatgccggc ccgcggcagc gcggccagcg cgggatcccg gtgcagcagc gcgttcacca
     1201 gcgtgccggc gggattgccg gcgcccgggt gcaccaccag cccggccggc ttgtcgatca
     1261 cgaagaccgc ttcgtcctcg tggaggatgt cgagcgcgat gtcctcggcg agcgcgtggg
     1321 tctgcggcgc cagcaccacc tgcagttcga ccgcctcgcc gccgcgcacc ggatcgcgcg
     1381 ggcgcaccgc gcggccatcc aggcgcgcgt ggccgtcctt gatccactcc gccagccggg
     1441 agcgcgagaa ttccgggaac agctcggcga gcaccgcgtc gaaccgccgc ccggccgcgt
     1501 tggcggggac ctgcgcggta cggatgtcgt ggctgggttc gggggtggac atcgtgcaac
     1561 cggcagtcag gggcgcatgg tgcgggactg ctattatccg gccttcgtgc cccggcgccc
     1621 cttttcctgc ccatgacccc cagcaagttc ccgcgcgtct ccctgcgtcc cgccctgctg
     1681 ctggtcctgc tggcggtgct cgccgcgtcc ggctgcgccc acttcggcaa gggccacaag
     1741 aaggacgcga acgaaggcgt tccggtcgag gagctctacg ccaagggcca ccggctgatg
     1801 gtctacggca actgggacgg cgccaacacc gtctacaagc gcctgatcgc gcagtatccg
     1861 tacggcccgt acaccgagca ggcgctgatg gaaaccgcct atgcccagta caagtcgggc
     1921 gcgaacgacg acgcgatctc cagcatcgac cgcttcatcc gcacctaccc gacccaccgc
     1981 aacatcgcct acctgtacta cctgcgcggc ctggtcaatt ccagccgcga cacggtgttc
     2041 ctgcagcgcg tgtggaagct cgacgccagc cggcgcgacc tcgccacccc gatgcaggcc
     2101 tacaacgact tcaagaccgt caccgagcgc tacccgaaca gccgctacgc cgccgacgcg
     2161 cgcgagcgca tgagcgcgct gcgcaacatg ttcgcccgcc acgagctgga gaccgcgctg
     2221 tactacctgc gacgcggcgc ctgggtgtcc gccgccgacc gcgccaagta cctgctggaa
     2281 acctacccgc agagcatctg gcagaacgac gcggtggcca ccctggccga ggcctacacg
     2341 cgcctgggca acaagacgct cgccgacgac gcgcgccgcg tgctgcagca gaacgacccc
     2401 aaccacccgt ggctgcgcgg cgactggccg gactatccgt cgaagctgcg ccgcctcaac
     2461 ccgttcgccg gcgagcgctc ggcggtcgac aaccactgag gcgcgtccgc gcgcccgaca
     2521 ggaaaacgcc gcccccggcc ggcgtttccg ttcgtggccc cggcgccgcc tttcagccgc
     2581 ggtagccgtt gctgatcgga tagcgccgct cgcgcccgaa cgcgcgccgc gacaccttcg
     2641 gccccggcgc cgcctggtgg cgcttccact cgctgatgcg caccaggcgc agcacgcgat
     2701 cgaccgtcgc cgcgtcgaag ccggcggcga cgatctccgc gcgcgactgc tcctggtcga
     2761 cgtggcgcag caggatcgca tcgagcacgt cgtagggcgg cagcgaatcc tggtcggtct
     2821 ggttctcgcg cagctcggcc gacggcggtc ggtcgatcac cccgggcggg atcaccggcg
     2881 tgccgccgac ggtattgcgc cagcgcgcca gcgcgtacac ctcggtcttg tacaggtcct
     2941 tgagcggcgc gtagccgccg cacatgtcgc cgtagatggt cgcgtagccg accgcgtact
     3001 cgctcttgtt gccggtggtc agcagcagcc cgccgaactt gttcgacagc gccatcagca
     3061 gcgcgccgcg ggtgcgcgac tgcaggttct cctcggtcac gtcggcggcc tggcccgaga
     3121 aggccccgga caaggccgac aggtagccct cgaacggccg ctcgatcggc agcgtcagca
     3181 ggcgcacgcc ctgcgtcgcg cactgttcgg cggcgaggtc gttggacagg tccgccgtgt
     3241 agcgcgaggg caggcgcacc gcggtcacgt tgtccgcgcc gagcgcgtcg acggccagcg
     3301 ccagcaccac cgccgaatcg atgccgcccg acaggccgag ccagaccctg gcgaagccgt
     3361 tcttgccgca gtagtcgcgg atgccgcgca ccaccgcgcg ccaggcgagc gcatcgcggc
     3421 cctcgtcggt ctcgaccggc caggccaccg gcgtgaagcg gcgcgtagcc gggtcgaagc
     3481 cggcgaccag ccagtgatcc tcgaacgcgc gcgcggcggg atacacgctg ccgtcgccgt
     3541 ccgccagcac cgacgcaccg tcgaacacga gcgcgtcctg accgccgacg aggttgaggt
     3601 aggcgaggcc gacgccactc tcgtgcacgc gctgcgcgat cagggcgtcg cgctgcgcgt
     3661 gcttgtcgcg ttcgaacggc gacgcgttcg gcaccagcac cagccgcgcg ccggcgcgca
     3721 ccgtcgccgc cagcggctcg gcgaaccaca ggtcctcgca gatgacgagg ccgaccggca
     3781 ctccgccgac gtcgaacacg caggcttcct ggtcggggtc gacgtcgaag tagcgccgct
     3841 cgtcgaacac cgcgtagttg ggcagctcgc gcttgcggta ggtgcgttcc acctgccccg
     3901 cgcgcagcac gctcgctgcg ttgtagacga tcgcgcccgc gctctgcggc cagccgacca
     3961 ccgcgacgat gccgtgggtg gcgcgggcga tctcctccag cgccgcctcg cagtcggcca
     4021 ggaaggacgg ccgcagcagc aggtcctcgg gcgggtagcc ggagagcgcg agctcgggga
     4081 agagcaccag atcggcgccg taggcgtcgc gcgcttcggc gatcatcgcg gcgatgcgtc
     4141 cggcgttggc gtggacggca ccgacgggaa agtcgaactg ggcgagggcg atgcggatcg
     4201 tcatgggtgg ccttctcctt cccccgcctg cgggggaagg tcgggatggg ggctggtcag
     4261 cgacagccaa tccaggatga cttgcaggac gccatcgata ttctgcagga cgtcggtgtt
     4321 ccagaagcga agcacgcgat agccctcagt gcgcaggaat gcgtcacgcc gctcgtcggt
     4381 aaggctgccg aggtgttggc caccatccac ttcgacgatc aagcgcctcg cgatgcaagc
     4441 gaaatcgaca acgaaagggc cgatcgggtg ctggcgccgg aaacgatggc ctgcctgctg
     4501 gaaccgcaga cgtttccaga gcgcctgttc cgcgtcagtc atcgttctcc gaagccgtcg
     4561 cgcgagttca agctttgctc ccacacgcat cgcattcccc catcccggcc ttcccccgcg
     4621 agcgggggaa ggagtcgaac cgcgcccagc atggcggcga ggcgaggtgg gagctgtcag
     4681 ggaacgccgt ggcatcgcgt caccttttcg gaaaacggcg tcaccaaaca aaagggccgc
     4741 acgaggcggc ccttgcttgt cgcacatcgg cgcatgacgc ggccgttact tcgccaaccg
     4801 cttcgcgatc gccgcgccga ggtcgcccgg cgacttcacc gtggtgacgc cggccttctc
     4861 catcgcggcg aacttgcctt ccgccgtgcc ggtgccgccc gaggcgatcg cgccggcgtg
     4921 gcccatgcgc ttgcccttcg gcgcgctggc gccggcgatg aagccgacca ccggcttggt
     4981 cacgtattcg gcgatgaact cggccgcttc ttcctcggcg ctgccgccga tctcgccgac
     5041 catgatgatg ccttcggtct gcggatcgtc ctggaaccac ttcagcgcgt cgatgaagtt
     5101 ggtgccgttg atcgggtcgc cgccgatgcc gatgcaggtc gactggccca ggccgacgtc
     5161 ggtggtctgc ttcacggctt cgtacgtcag cgtacccgag cgcgagacga tcgcgacctt
     5221 gcccggcttg tggatatggc ccggcatgat gccgatcttg caggcgcccg gcgtgatgat
//
LOCUS       DATIQC010000209         3678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_402606, whole genome shotgun sequence.
ACCESSION   DATIQC010000209 DATIQC010000000
VERSION     DATIQC010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402606"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VLM17_04405"
     CDS             complement(<1..231)
                     /locus_tag="VLM17_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008435106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051219 - phosphoprotein binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HSR64830.1"
                     /translation="MQARLIAYPSDQAAMVRTLEPGVPLAVGRAAEAGLRLDHPSVSR
                     AHAELRFDGAHWELRCLGSKNGSFVDGIRVPQA"
     gene            complement(284..1138)
                     /locus_tag="VLM17_04410"
     CDS             complement(284..1138)
                     /locus_tag="VLM17_04410"
                     /inference="COORDINATES: protein motif:HMM:NF042499.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6689 family protein"
                     /protein_id="HSR64831.1"
                     /translation="MKWLLSAAALLCAGALAPPASAQTLAGLPVNVDLPVSVSVAGNV
                     AVAEIGIASAPIAEVTLTFDDASNLTPASLGLSARLVDLDDPQLLARLPDASLIRLDS
                     GLPLLVTIQPPLAGGLNFRRTGRYELHTHLLGYSVGSNYRVFKAPVGGAFRDTTEEIA
                     QGSVRARSRYGGFSQFLVAVDLRETGTVVADKIAWLRNRVATLPAAEQPVFSGQLDTI
                     ESAVASHDYATALTAVDALSSRAQADAGTALPDTWRAGGADNQAGDLMAGAATLKFSI
                     AYLRDFGQ"
     gene            1415..>3678
                     /locus_tag="VLM17_04415"
     CDS             1415..>3678
                     /locus_tag="VLM17_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HSR64832.1"
                     /translation="MSAFRTRTPFRITAIAAGLLLSGVALADAHLDPQLLDRLAKAAS
                     GDELQVVVTWNHAGAPTAADVSALKSLGISKGITMRSLPIAGALATPAEIRALAQRSD
                     VASIYYNAPVRYFDQEANGLSSVTRMFENPGDYTRALPFSGAGVTVEINDSGIDGTHD
                     DLKFGTHVVQNTLGSTNLNAVDTMLPVTYVEGVPNTDISSGHGTHCAGIVGGTGAKSN
                     GLYRGVAPGAKLVGYGSGAVLLVLDAVGGLDYAATNQFSYGTPIRVVSNSWGTSGPFD
                     PADPVNVASYELYKRGIVTVFAAGNDGPGEDTHNPYAQAPWTISVGASEKDAVLTSFS
                     SRGKRGESGTFTMYDGKSWTYRNLPTIVAPGVDIVSTRTLTGVLPPLEAQYDAETIDA
                     AYLPYYTHMSGTSMATPHVAGIVALMLEANPNLTPADVQNILKRTATNMTGRLDWEAG
                     AGHVNAYEALAMATGLRTDYGATVNSLRTFNSNALLVKGADPVPFSVDFAPVGPVGEQ
                     TFTVGTDVAWVSAKATIDANTLALVLIDPDGVRYGSAIALPVIGDTVTTGAPAKPGVW
                     RVTVRGIGSVSGTDVDPLNVTNGYAAPGTVTGTVSFLNSGGYTGLNDVAGHPAQKAIE
                     FAVANRLVDGYSDKSFRPDQNLKRSELAQYLVMGASVRQHLPFNGVPSFGDLSTTSFA
                     YPFAEAAVARGGALRDLGQNQAGVMGLLNGSFRPNDSVTRVSLAYSLVQALALQDQAL
                     AFTGTLTAFYDGKR"
BASE COUNT          573 a         1326 c         1271 g          508 t
ORIGIN      
        1 cgcctgcggc acgcggatgc cgtccacgaa gctgccgttc ttgctgccga ggcagcgcag
       61 ttcccagtgg gctccgtcga agcgcagttc ggcgtgggcg cgggacaccg acgggtggtc
      121 gagccgcagc ccggcctcgg cggcgcggcc gaccgccagc ggcacgccgg gctccagcgt
      181 gcgcaccatc gcggcctggt cggagggata ggcgatcagt cgcgcctgca tcgggccagt
      241 gtagcccggc ccgatgcagg atgaacgcgc gtcgcgccgg gcgctactgc ccgaagtcgc
      301 ggaggtaggc gatgctgaat ttcagcgtcg cggcaccggc catcaggtcg ccggcctggt
      361 tgtccgcgcc accggcgcgc caggtatccg gcagcgcggt gccggcatcg gcctgcgcgc
      421 ggctggacag ggcgtcgacc gcggtcagcg cggtggcgta gtcgtggctg gcgacggccg
      481 attcgatggt gtccagttgc ccggagaaca ccggctgctc ggcggcaggc aaggtcgcca
      541 cgcggttgcg cagccacgcg atcttgtcgg cgaccaccgt gccggtctcg cgcaggtcga
      601 ccgcgaccag gaactgcgag aagccgccgt agcgactgcg cgcgcgcacg ctgccctggg
      661 cgatctcctc ggtggtgtcg cggaacgcgc cgcccaccgg cgccttgaac acgcggtagt
      721 tgctgccgac cgaatacccc agcaggtggg tatgcagttc gtagcggccg gtgcggcgga
      781 aattcaggcc gcccgccagc ggcggctgga tggtcaccag cagcggcagg ccggagtcga
      841 gccggatcag gctggcgtcg ggcaggcgcg ccagcagctg cgggtcgtcg aggtcgacca
      901 ggcgcgcgct gaggccgagg ctcgccggcg tgaggttgct ggcgtcgtcg aaggtgagcg
      961 tcacctcggc gatcggcgcc gacgcgatgc cgatctccgc caccgccacg ttgcccgcca
     1021 ccgacacgct caccggcagg tcgacgttga ccggcagccc ggccagggtc tgcgcggacg
     1081 cgggtggggc gagcgcgccc gcgcacagca gcgcggccgc cgacagcagc cacttcatgg
     1141 acgggacatt cctcacggac gggctcctgc aggaggccgc gctgcacgag gggagggagc
     1201 gcgcgcggca atgcgccgag gttaccggcg ccgcgcgtta aatccacgtg gtgatgcagg
     1261 ggttttcggc gcgaaaggtg aacgggttgg caatacgccg gggcatgggg gttttccccc
     1321 ggcgcgcatg gagagtgcac cggatgggcg ggcagggcgg atgggcgcac aaacaggggt
     1381 gcaccgcact gccgcggctt ccctggagtt tccgatgtcc gccttccgca cccgcacccc
     1441 cttccgcatc accgcgatcg ccgcagggct gctgctcagc ggcgtcgcgc tcgccgacgc
     1501 ccacctggat ccgcagctgc tggatcgcct cgccaaggcc gcgagcggcg acgagctgca
     1561 ggtcgtcgtc acctggaacc atgccggcgc gcccaccgcc gccgacgtct cggcgttgaa
     1621 gtcgctgggc atctccaagg gcatcaccat gcgcagcctg ccgatcgccg gcgcgctcgc
     1681 cacgcccgcc gagatccgcg cgctcgcgca gcgcagcgac gtggcgtcga tctactacaa
     1741 cgcgccggtc cgttatttcg accaggaggc caacgggctc agcagcgtca cccgcatgtt
     1801 cgagaacccc ggcgactaca cccgcgcgct tcccttcagc ggcgccggcg tcaccgtcga
     1861 gatcaacgac tccggcatcg acggcaccca cgacgacctc aagttcggca cccacgtcgt
     1921 gcagaacacc ctgggctcga ccaacctcaa cgcggtcgac acgatgctgc cggtcaccta
     1981 cgtcgagggc gtgccgaaca ccgacatcag ctccggccac ggcacccact gcgccggcat
     2041 cgtcggcggc accggcgcca agtccaacgg cctgtaccgc ggcgtcgcgc cgggcgccaa
     2101 gctcgtcggc tacggttcgg gcgcggtgct gctcgtcctg gacgcggtcg gcggcctcga
     2161 ttacgccgcg accaaccagt tcagctacgg cacgccgatc cgcgtggtca gcaattcgtg
     2221 gggtacttcc ggcccgttcg atccggccga tccggtcaac gtcgccagct acgagctgta
     2281 caagcgcggc atcgtcaccg tgttcgccgc cggcaacgac ggcccgggcg aggacacgca
     2341 caacccgtac gcgcaggcgc cgtggacgat ctcggtcggc gcgagcgaga aggacgccgt
     2401 gctgacctcg ttctcctcgc gcggcaagcg cggcgagagc ggcaccttca cgatgtacga
     2461 cggcaagagc tggacgtacc gcaacctgcc gaccatcgtc gcgccgggcg tggacatcgt
     2521 ctcgacgcgc acgctgaccg gcgtgctgcc gccgctggaa gcgcagtacg acgccgaaac
     2581 catcgacgcc gcctacctgc cgtactacac ccacatgagc ggcacctcga tggcgacgcc
     2641 gcacgtcgcc ggcatcgtcg cgctgatgct cgaggccaat ccgaacctca ccccggccga
     2701 cgtgcagaac atcctcaagc ggaccgccac caacatgacc ggtcgcctcg actgggaggc
     2761 cggcgccgga cacgtcaatg cgtacgaggc gctcgcgatg gccaccggcc tgcgcaccga
     2821 ctacggcgcg acggtcaatt cgctgcggac gttcaacagc aacgcgctgc tggtgaaggg
     2881 cgccgacccg gttccgttct cggtcgattt cgccccggtc ggacccgtgg gcgaacagac
     2941 cttcaccgtc ggcaccgacg tggcgtgggt cagtgcgaaa gccaccatcg atgccaacac
     3001 gctggccttg gtgctgatcg atccggacgg cgttcgctac ggctcggcga tcgcgctgcc
     3061 ggtgatcggc gacacggtca ccaccggagc acccgccaag cccggcgtgt ggcgcgtgac
     3121 cgtgcgtggc atcggctcgg tgtcgggcac ggacgtcgat ccgctcaacg tcaccaacgg
     3181 ctacgccgcg cccggcaccg tcaccggcac ggtcagcttc ctcaacagcg gcggctacac
     3241 cggcctcaac gacgtcgcgg gccatccggc gcagaaggcg atcgagttcg cggtcgccaa
     3301 ccgcctggtc gacggctatt cggacaagag cttcaggccg gaccagaacc tcaagcgcag
     3361 cgagctcgcg cagtacctgg tgatgggcgc gagcgtgcgc cagcacctgc cgttcaacgg
     3421 cgtgccgagc ttcggcgacc tgtcgaccac gagcttcgcg tatccgttcg cggaagccgc
     3481 ggtggcacgc ggcggcgcgc tgcgtgacct cggccagaac caggcgggcg tgatgggcct
     3541 gctcaacggg tcgttccgtc cgaacgacag cgtcacccgc gtcagcctgg cgtactcgct
     3601 cgtgcaggcg ctggcgctgc aggaccaggc cctggcgttc accggcacgc tcaccgcgtt
     3661 ctacgacggc aagcgcat
//
LOCUS       DATIQC010000210         6841 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_544386, whole genome shotgun sequence.
ACCESSION   DATIQC010000210 DATIQC010000000
VERSION     DATIQC010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6841
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544386"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1301
                     /locus_tag="VLM17_04420"
     CDS             <1..1301
                     /locus_tag="VLM17_04420"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64833.1"
                     /translation="LATARTEGRYEKEGWRVRKDGTRFWASVVIDPVRDEEGRLIGYA
                     KITRDVTERRQQAQALEVAHQSMMQAHRMEAIGQLTYGVAHDFNNLLTVIGNSLDLIA
                     AEVDDPRRRRRLVAGAQRAAERGALLTRQLLAFARKQPLRPECHDLNALLAAGESVLR
                     RAVGEAVEMEFNLAPGLAPVDVDAGEFEAALLNLVVNARDALPPEGGRIQVRTRERCM
                     PAGFDAGGREGRYVCVSVEDNGAGMSPEVRARAMEPFFTTKEVGKGSGLGLSHVYGFA
                     TQSGGYVTIDSSVGRGTTIDLHLPVREEAAPAQDSPEAAPARILVVEDDADVQMVTIE
                     ALRYLGYSVLTADEGRAALEILRRDPGIDLLFTDVVMPKGMSGLDLLAEARSLRPGLK
                     VLLASGYARGQLPALDDAADFIAKPYRIEELQQRLEQLLG"
     gene            complement(1332..2090)
                     /locus_tag="VLM17_04425"
     CDS             complement(1332..2090)
                     /locus_tag="VLM17_04425"
                     /inference="COORDINATES: protein motif:HMM:NF018894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar regulator YcgR PilZN domain-containing
                     protein"
                     /protein_id="HSR64834.1"
                     /translation="MNEADQSPSPAPPEDDGYYDKFFVYNAADVRRHLQRLVDARCTL
                     SAHAEGARESVVTALLQVEDASLWVDVPPGRDTLMRWLNAPQLRFEGSLERVALRFAC
                     GPAQLETHDGRPALLLPVPTRVLHLQRREFMRREPPAGALTCRFPSPGGQWIDATIRD
                     IGGGGLAILGTPEQVRFAVGDVVGQCRIRLPELGEVVVDLRVRHVIERQHHGRDVAQA
                     GCEFVDLDAASQRKLFRYLMQLDREELARRRLSD"
     gene            2351..3721
                     /locus_tag="VLM17_04430"
     CDS             2351..3721
                     /locus_tag="VLM17_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64835.1"
                     /translation="MNLSSFPRPAWATGLALAAALVAGPASAAPISGALFTTDAAANV
                     NVNQYPAKTDVYLSGGPGPNAPCTAAGMDDGDYVFQITNPSGTVILSKDTIDHRHFTV
                     TNGVIVSASDHAIVPSLCGGVGVQMFDFDDTPNNGGVYKAWVTRYTDYVANGNTFKPG
                     STKTDNFHVAEPSITPDTADLNVYKFYDANANGLWDPDEIPLFGWAMTASSNVGVIGT
                     QLTQSPDGITTFSGLSTADNPYAVEEGTAGGTWHQSASIVNGAPTGSPTNPVTGLALV
                     ANQTTEVIFGNYCTCRNRGYTPYWWTTANGATKLNDGGTMTPEFRLLNGLHLRNANGT
                     NFFLDTVNQTQANNYATLQGWLLGADDTNMAYLLSVHLAALRLNIEGGFVHRLNFFPA
                     YGGTVADLLADADAALAADGNTPVGDPNRLLQEELKNFLIQLEVNIDLISNKPCKYSF
                     LTAPAG"
     gene            complement(3767..4597)
                     /locus_tag="VLM17_04435"
     CDS             complement(3767..4597)
                     /locus_tag="VLM17_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacetylase"
                     /protein_id="HSR64836.1"
                     /translation="MSAAEPTPPDCAAALADWLHAHRRVFVLTGAGCSTASGIPDYRD
                     ASGAWKRAAPVTWQAFLREPATRARYWARSFAGWPHVARALPNATHHALARLDAREGL
                     ALLVTQNVDGLHQRAGSREVVDLHGRIDAVRCLDCGVRSPRARLQDQLAARNPQWRHR
                     QAPGAPDGDADIEDTAGFHVPECMACGGMLKPDVVFFGENVPRARVEHAQRALREADA
                     MLVVGSSLMVYSGYRFARMAREAGLPLAILTRGVTRADALATLKLDADCGRTLASALA
                     "
     gene            complement(4707..5663)
                     /gene="motB"
                     /locus_tag="VLM17_04440"
     CDS             complement(4707..5663)
                     /gene="motB"
                     /locus_tag="VLM17_04440"
                     /inference="COORDINATES: protein motif:HMM:NF006548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HSR64837.1"
                     /translation="MAVVAEKPVIVIRRVKKVAGGHHGGAWKVAYADFVTAMMAFFLV
                     MWIVGIADKSTKAAISEYFKNPSAVVGRSLKPAPGAMGPGGAADRMIPTANAVAMPGG
                     IGSDFGRRADPMAAARGGSGDQDRAHQRERDRRQLEELRQQLNAAIDRSQALAPFKDQ
                     LLIDLTSEGLRIQIVDRLNRPMFDLGSEELKPYAEPLLRELGALLQKGEHGIAISGHT
                     DELPFHAPDGYGNWELSSDRANAARRALLRGGLSEARVDRVVGLAASVPFDRDDPRDP
                     VNRRISILVLNHDADQRADTVQAGAAPVARGAPSDILRATVR"
     gene            complement(5663..6517)
                     /gene="motA"
                     /locus_tag="VLM17_04445"
     CDS             complement(5663..6517)
                     /gene="motA"
                     /locus_tag="VLM17_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019303316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HSR64838.1"
                     /translation="MLILVGLVVVLFSVFGGFVLAHGQLGSLWQPYELLIIGGAATGA
                     FVVGNPPKVVKAVLAGIPLLFKGTRYRREDYLDILAMLYGVLTRIRKEGLIAIERDID
                     NPTESGVFTRHPKLLADKHLMEFTTDCLRLMVSGNLDPLELEQLLDVEVETHHKEAHE
                     PAHALQVLADSLPGFGIVAAVLGIVTTMASIGGEVAEIGKHVAGALVGTFLGILLGYG
                     FVGPLAAALTHRANEEGKAFEIIKMALVSSLRGYPPTVAVEFARKLLFSDVRPNFADL
                     EAHLRANR"
BASE COUNT         1029 a         2391 c         2444 g          977 t
ORIGIN      
        1 cgctggcgac cgcgcggacc gaggggcgct acgagaagga aggctggcgg gtgcgcaagg
       61 acggcacccg cttctgggcg agcgtcgtga tcgatccggt gcgcgacgag gaaggccgcc
      121 tgatcggcta cgccaagatc acccgcgacg tcaccgagcg gcgccagcag gcgcaggcgc
      181 tcgaagtggc gcaccagtcg atgatgcagg cccaccggat ggaggcgatc ggccaactga
      241 cctacggcgt cgcccacgac ttcaacaacc tgctgaccgt gatcggcaac agcctggacc
      301 tgatcgccgc cgaagtggac gatccgcggc gccggcgccg gctggtcgcc ggggcccagc
      361 gcgccgccga gcgtggcgct ttgctgacgc gccagttgct cgccttcgcc cgaaagcagc
      421 cgctgcgccc cgaatgccac gacctcaatg ccctcctggc cgcgggcgaa tccgtgctgc
      481 ggcgcgcggt gggcgaggcg gtggagatgg aattcaacct ggcgcccggg ctcgccccgg
      541 tggacgtgga tgccggcgaa ttcgaggcgg cgctgctcaa cctcgtcgtc aacgcgcgcg
      601 atgcgctgcc gcccgagggc ggtcggatcc aggtgcgcac ccgcgagcgc tgcatgccgg
      661 ccggtttcga tgcgggcggg cgcgaaggcc gctacgtgtg cgtgtcggtc gaggacaacg
      721 gcgcagggat gagtccggag gtgcgcgcgc gggcgatgga gccgttcttc acgaccaagg
      781 aggtcggcaa gggcagcggg ctcggcctga gccacgtcta tggcttcgcg acgcagtccg
      841 gcggctacgt caccatcgac agcagcgtgg gccgcggcac caccatcgac ctgcacctgc
      901 cggtgcgcga ggaggccgcg ccggcgcagg attcgccgga ggcggctccg gccaggatcc
      961 tcgtggtcga ggacgatgcc gacgtgcaga tggtgaccat cgaggcgttg cgctacctcg
     1021 gctattcggt gctgaccgcg gacgagggcc gcgcggcgct ggagatcctg cgccgcgatc
     1081 ccggcatcga cctgctgttc accgacgtgg tgatgcccaa gggcatgagc gggctcgacc
     1141 tgctcgccga ggcgcgcagc ctgcgtccgg gcctgaaggt gctgctcgcg tcgggctacg
     1201 cgcgcggaca gctgccggcg ctggacgacg ccgccgactt catcgccaag ccctaccgga
     1261 tcgaggagct gcagcagcgc ctggagcagt tgctgggctg accgtgcccc gacgggtggg
     1321 attgccgcgc gtcagtcgga caggcggcgc cgcgcgagtt cctcgcggtc gagctgcatg
     1381 aggtagcgga acagcttgcg ctgcgaggcc gcatcgaggt cgacgaactc gcagccggcc
     1441 tgggcgacgt cgcggccgtg gtgctggcgc tcgatcacgt ggcgcacgcg caggtcgacc
     1501 accacttcac cgagttccgg caggcggatg cggcactggc cgacgacgtc gccgaccgcg
     1561 aaccggacct gctcgggggt gcccaggatg gccaggccgc cgccgccgat gtcgcggatg
     1621 gtggcgtcga tccattggcc accgggcgag gggaagcggc acgtcagcgc ccccgccggg
     1681 ggctcgcgcc gcatgaattc gcgccgctgc aggtgcagca cccgggtggg caccggcagc
     1741 agcagggcag ggcggccgtc gtgggtctcg agctgcgcgg gcccgcacgc gaagcgcagg
     1801 gcgacccgct ccaggctgcc ctcgaagcgc agctgcggcg cgttgagcca gcgcatcagc
     1861 gtgtcgcggc ccggcggcac gtcgacccac agcgatgcgt cctcgacctg cagcagcgcg
     1921 gtcaccacgc tctcgcgcgc gccttcggca tgcgccgaca gcgtgcagcg cgcatcgacc
     1981 aggcgttgca ggtggcgacg cacgtccgcc gcgttgtaga cgaagaactt gtcgtaatag
     2041 ccgtcgtctt cgggcggggc gggcgatggg gactggtcgg cttcgttcat tcgtcggggt
     2101 gggatgtcgg cgttcgcccg gttcgattat cggccttaac cggggctgct tgaacgcgct
     2161 tcgtcacgtc ccgcggccgg cgggcaggct gaatccggcg cggaaccctg gcgttcatcg
     2221 ccgcgcgccc ggcggtgtcc gccgccccct gccacgggcg ttggcctcac tgcggcttca
     2281 agaaggatgc ggtagcccgc gaagggcgag gcggaagtcg cacctccact ggttttcgca
     2341 ggactccccc atgaacctca gcagcttccc gcgcccggcc tgggccacag gcctcgccct
     2401 tgccgccgcg ctcgtggccg gccccgcatc ggcggcgccg atcagcggtg ccctcttcac
     2461 caccgacgcc gcggccaacg tcaacgtcaa ccagtacccc gccaagaccg acgtctacct
     2521 cagcggcggc cccggcccga acgcgccgtg caccgccgcc ggcatggacg acggcgacta
     2581 cgtcttccag atcaccaatc cgtccgggac cgtcatcctg agcaaggaca cgatcgacca
     2641 tcgccatttc acggtcacca atggcgtgat cgtgtcggcc tccgaccatg cgatcgtgcc
     2701 gagcctgtgc ggcggggtcg gggtgcagat gttcgacttc gacgacacgc ccaacaacgg
     2761 cggcgtgtac aaggcctggg tgacccgtta caccgattac gtcgccaacg gcaacacgtt
     2821 caagccgggc agcaccaaga ccgacaactt ccacgtcgcc gagccgtcga tcacgccgga
     2881 cacggccgac ctcaacgtgt acaagttcta cgacgcgaat gccaacgggc tgtgggatcc
     2941 ggacgagatc ccgctgttcg gctgggcgat gaccgcctcc agcaacgtcg gcgtgatcgg
     3001 cacccagctg acccagtcgc cggacggcat caccaccttc agcggcctgt ccacggcgga
     3061 caacccgtat gcggtcgagg aaggcaccgc cggcggcacc tggcaccagt cggcgtcgat
     3121 cgtcaacggc gctcccaccg gctcgccgac caacccggtc accggcctgg ccctggtggc
     3181 gaaccagacc accgaggtga tcttcggcaa ctactgcacc tgccggaacc gcggctatac
     3241 gccgtactgg tggaccaccg ccaacggcgc gaccaagctc aacgatggcg gcaccatgac
     3301 gccggagttc aggctgctca acggcctgca cctgcgcaac gccaacggca ccaacttctt
     3361 cctcgacacg gtcaaccaga cgcaggcgaa caactacgcg accctgcagg gctggctgct
     3421 cggggccgac gacacgaaca tggcgtacct gctgtcggtg cacctggcgg cgttgcggtt
     3481 gaacatcgag ggcgggttcg tgcaccggct gaacttcttc ccggcctacg gcggcaccgt
     3541 cgccgacctg ctcgccgacg cggacgccgc gctggccgcc gacggcaaca cgccggtggg
     3601 tgatccgaac cggctgctgc aggaggaact gaagaacttc ctgatccagc tcgaggtcaa
     3661 catcgacctg atcagcaaca agccctgcaa gtacagcttc ctgaccgcgc cggccggctg
     3721 aggccgacca ccgaaagccc cggttcgccg gggctttctt ttgccgtcac gcaagcgcgg
     3781 aagccagcgt gcggccgcaa tcggcgtcga gcttgagcgt ggccagcgcg tcggcacggg
     3841 tcacgccgcg ggtcaggatc gccagcggca ggcccgcctc gcgcgccatg cgggcgaagc
     3901 ggtaacccga atagaccatc agcgaggaac cgaccacgag catcgcgtcc gcctcgcgca
     3961 gcgcgcgctg ggcatgctcg acccgcgcgc gcggcacgtt ctcgccgaag aagaccacgt
     4021 ccggcttgag catgccgccg caggccatgc attcgggcac atggaagccg gcggtgtcct
     4081 cgatgtccgc gtcgccgtcg ggcgcgcctg gtgcctggcg gtggcgccat tgcgggttgc
     4141 gggcggccag ttggtcctgc agtcgcgcgc gaggcgagcg caccccgcag tcgaggcagc
     4201 gcaccgcgtc gatgcgcccg tgcaggtcga ccacctcgcg gctgccggcg cgctggtgca
     4261 ggccgtcgac gttctgggtc accagcagcg ccagcccttc gcgcgcatcc agccgggcca
     4321 gcgcatggtg ggtcgcgttc ggcagcgccc gggcgacgtg cggccagccg gcgaagctgc
     4381 gcgcccagta gcgggcacgc gtggccggct cgcgcaggaa cgcctgccag gtcaccggcg
     4441 cggcgcgctt ccacgcgccg ctggcgtcgc ggtagtcggg aatgccggag gcggtgctgc
     4501 agccggcgcc ggtcaggacg aagacgcggc ggtgcgcgtg cagccagtcg gcgagcgcgg
     4561 cggcgcagtc gggaggggtc ggctcggcgg cggacatgcc ggggatgcta acgctgccgc
     4621 cccgggttcc gatgtggaag tgccgttcgg cgcggactcc gcgcgtgacg acgggcgctg
     4681 ccgttctgcg gacgacgcgc cgcgtttcag cgcaccgtcg cgcgcaggat gtccgagggc
     4741 gcgccgcgcg cgaccggggc ggcgccggcc tgcacggtgt cggcccgctg gtcggcgtcg
     4801 tggttgagca ccaggatgct gatgcggcgg ttgaccggat cgcgcggatc gtcgcggtcg
     4861 aacggcaccg acgccgccag gccgaccacg cggtcgacgc gcgcttccga cagtccgccc
     4921 cgcagtaatg cgcgccgcgc ggcgttggcg cgatcgctgg acagctccca gttgccgtag
     4981 ccgtcgggcg cgtggaacgg cagttcgtcg gtgtggccgc tgatggcgat cccgtgttcg
     5041 cccttctgca gcagcgcgcc cagctcgcgc agcagcggtt cggcgtaggg cttcagctcc
     5101 tcgctgccga ggtcgaacat gggccggttg aggcggtcga cgatctggat gcgcaggccc
     5161 tcggaggtca ggtcgatcag cagctggtcc ttgaacggcg ccagggcctg gctcctgtcg
     5221 atcgccgcat tgagctgctg gcgcaattcc tcgagctggc ggcggtcgcg ctcgcgctgg
     5281 tgggcgcggt cctggtcgcc gctgccaccg cgcgcggccg ccatcgggtc cgccctgcgg
     5341 ccgaagtcag agccgatgcc gccgggcatc gccaccgcgt tcgcggtcgg gatcatcctg
     5401 tcggccgcgc cgcccgggcc catcgcgccg ggcgcgggct tgagcgacct gccgaccacg
     5461 gcgctcgggt tcttgaagta ctccgagatc gccgccttgg tgctcttgtc ggcgatgccg
     5521 acgatccaca tcaccaggaa gaacgccatc atcgcggtga cgaagtcggc gtacgccact
     5581 ttccacgcgc cgccatggtg gccgccggcc accttcttca cccggcggat gacgatgacg
     5641 ggtttttcgg cgacgacggc catcagcggt tcgcgcgcag gtgcgcctcg aggtcggcga
     5701 agttcgggcg cacgtcggag aacagcagct tgcgcgcgaa ctccaccgcc accgtcggcg
     5761 gatagccgcg caggctggat accagcgcca tcttgatgat ctcgaaggcc ttgccttcct
     5821 cgttcgcgcg atgggttagc gcggcggcga gcggtccgac gaagccgtag ccgagcagga
     5881 tgccgaggaa agtgccgacc agcgcgccgg cgacgtgctt gccgatctcc gccacctcgc
     5941 cgccgatcga ggccatcgtg gtgacgatgc cgagcaccgc ggcgacgatg ccgaagccgg
     6001 gcagggaatc ggcgagcacc tgcagcgcat gcgcgggctc gtgcgcttcc ttgtggtggg
     6061 tctcgacctc cacgtccagc agttgctcca gttcgagcgg atcgaggttg ccgctgacca
     6121 tcagccgcag gcagtcggtg gtgaactcca tcaggtgctt gtcggcgagc agcttcggat
     6181 gacgggtgaa gacgccgctt tccgtcggat tgtcgatgtc gcgctcgatc gcgatcagcc
     6241 cttccttgcg gatccgggtc agcacgccgt acagcatggc gaggatgtcg aggtagtcct
     6301 cgcgcctgta acgggtgccc ttgaacagca gcgggatgcc ggcgagcacc gccttgacca
     6361 ccttcggcgg gttgccgacc acgaaggcgc cggtcgccgc gccgccgatg atgaggagtt
     6421 cgtagggctg ccacagcgag ccgagctgcc cgtgcgcgag gacgaagccg ccgaacacgc
     6481 tgaagagcac gacgacgagg ccgacgagga tgagcatggg gagccgcgct gtaaaactgc
     6541 cagcggtatc ggcaggcacg gccgggggtt gagcaccgcg ttcagggcga tgaaccgggc
     6601 cggccgcgag tcgccgcgcc gcgccggttc cgctggcgcg cgacgacgac gcggcgacgc
     6661 gccccggcgt acagtcgggc ttccgttccc gagcggcact gcgatgcgtg cagcgggctg
     6721 gccgatggcg atcctggcgg tgctggcgct ggcgccgtgc atgtcgtgca gccgcgaatc
     6781 cggaggcgcc atgccgcacc catcccctcc agcatcgtcc agcacgcgcg acggactgca
     6841 a
//
LOCUS       DATIQC010000211         4725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_473905, whole genome shotgun sequence.
ACCESSION   DATIQC010000211 DATIQC010000000
VERSION     DATIQC010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4725
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473905"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..458)
                     /locus_tag="VLM17_04450"
     CDS             complement(<1..458)
                     /locus_tag="VLM17_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009394731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006801 - superoxide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-Mn family superoxide dismutase"
                     /protein_id="HSR64839.1"
                     /translation="MAIELPPLPFDRTALEPHISGETIDYHYGKHHKAYVDNLNKMIA
                     GTEFESMPLEEIVRKSQGGMFNNAAQVWNHTFYWNCLSPKGGGEPSGKVADAIAKSFG
                     GFDKFKEQFSDTAVKTFGSGWAWLVQRPDGALALASTPNAVTPLTGEDTPL"
     gene            591..911
                     /gene="grxD"
                     /locus_tag="VLM17_04455"
     CDS             591..911
                     /gene="grxD"
                     /locus_tag="VLM17_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HSR64840.1"
                     /translation="MSVLERIRSEVESHPVVLFMKGTPQFPMCGFSSRSVQALKAAGA
                     SGLHTVNVLEEPEIRANLPRYSNWPTFPQLFINGELIGGCDITLELYESGELARMLGE
                     AQKA"
     gene            908..1696
                     /locus_tag="VLM17_04460"
     CDS             908..1696
                     /locus_tag="VLM17_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR64841.1"
                     /translation="MSDAVAKPLAGRVVLVTGAHGGLGSAASRACARAGATLVLLGRR
                     VPKLNRVHDAIVAEGGEALLYPLDLEGASPDDYAEMASRVEGELGRLDGLLHCAAEFR
                     GLTPLLHTDPAVFARALHVDLTAPAWLTQACLPLLMRADDAAVVFTIDDLARVGQAYW
                     GGYGVAEHGLAALVRMLHAELANSRVRIAGLTPGPMRTALRAMAYVEEDDQVARDPAL
                     YAEACVTLLSPAGAGHRGTIWNVAPREAIDLPLMGPPAAGTGRA"
     gene            1693..2292
                     /locus_tag="VLM17_04465"
     CDS             1693..2292
                     /locus_tag="VLM17_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HSR64842.1"
                     /translation="MTIASAALLLFLILDPLGNIPVFLSLLRHLPQRRQRVVLARELA
                     IALGVLMAFLWGGKFGLELMHLRQESVSIAGGIVLFLIGIRMIFPPPEGLMGELPEGE
                     PFIVPMAVPLVAGPSGMAAVMLMGSNDPARLGDWSLALLIAWSATAAILFSATYLYKW
                     LGSRVLTAVERLMGMLLVAISVQMLLDGLATYLHVTPGA"
     gene            2366..3748
                     /gene="ppnN"
                     /locus_tag="VLM17_04470"
     CDS             2366..3748
                     /gene="ppnN"
                     /locus_tag="VLM17_04470"
                     /EC_number="3.2.2.10"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase PpnN"
                     /protein_id="HSR64843.1"
                     /translation="MDEFATPRLPTVNARIYPRGGLDVLSREEVQKLRDASAGGMHEL
                     LRRCALAVLTSGSTSDDPLAARELYHDFDIQVLQQDRGLRLDLLNAPAMAFVDGEIIR
                     GVAELLFAVVRDLVYTSVELAPEYADELCSSAGITDAVFRLLRNARVLHPGDPNLAVC
                     WGGHSINRDEYEYTKEVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRQHRPRY
                     LGITEPGIIAAESPNPIVNHLVIMPDIEKRLESFVRLGHGIIVFPGGVGTCEEILYLL
                     GILLREENAQLPFPLFFTGPAAAAPYFEQIDRFLRLTLGEAATSRYRIVVGDSAEVAR
                     LMAEGIRKVRAFRVAQQDSFFFNWAIDIPLAFQQPFVPTHEAMAALDLHHGRKPQDLA
                     ADLRRAFSGIVAGNVKEEGIRRVEEHGPYRIHGDRNIAEALDALLRGFIAQRRMKIAG
                     EYRPSYEIVG"
     gene            complement(3753..4211)
                     /locus_tag="VLM17_04475"
     CDS             complement(3753..4211)
                     /locus_tag="VLM17_04475"
                     /inference="COORDINATES: protein motif:HMM:NF028042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin protein"
                     /protein_id="HSR64844.1"
                     /translation="MRRSGTRGFTLLELMIVLVVIAIIVAFALPSLLEQVRKSKRSEA
                     VRVLGEFQLREERWRAENPAYGTLDDLTGSATASTNFNSSLNNYTVSVSGNTGSAYVI
                     TATRKNDLATDPKCANFVMRYGSTCDGTATSGVISQCMSDNKNVAYCWRK"
     gene            4378..>4725
                     /locus_tag="VLM17_04480"
     CDS             4378..>4725
                     /locus_tag="VLM17_04480"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSR64845.1"
                     /translation="MPVGNRQSGFTMVELMVTLTVAAILAVLAAPSFADFIDRARLKG
                     VAGNVVDFINDARAESVKRNRDVNVAFKGTITDWCVGANGAGEPATAGDPVPPLNACD
                     CTNASSCKVGADQK"
BASE COUNT          685 a         1678 c         1586 g          776 t
ORIGIN      
        1 agcggggtgt cctcgccggt gagcggcgtc accgcgttcg gcgtcgacgc cagcgccaat
       61 gcgccatcgg gacgctgcac cagccacgcc cagcccgaac cgaaggtctt caccgcggtg
      121 tcgctgaact gctccttgaa cttgtcgaag ccgccgaacg acttggcgat cgcgtcggcg
      181 accttgcccg acggctcgcc gccacccttg ggagacaggc agttccagta gaaggtgtgg
      241 ttccacacct gcgcggcgtt gttgaacatg ccgccctgcg acttgcgcac gatctcctcg
      301 agcggcatcg actcgaactc ggtgccggcg atcatcttgt tgaggttgtc gacgtaggcc
      361 ttgtggtgct tgccgtagtg gtagtcgatc gtctctccgg agatgtgcgg ttccagcgcg
      421 gtgcggtcga agggcagggg aggcagttcg atggccatgg ggggacgact cctgtcgggg
      481 cggggaacgc ggcttggacc gcggacgaag gcttacaatg gccggattct acccccaccc
      541 cgcagccggc gttgtcgcgg cggcggggcc gtacctgcag gagaaaccgc atgtccgtgc
      601 tcgagcgcat ccgctccgaa gtcgaaagcc accccgtcgt gctgttcatg aagggcacgc
      661 cgcagttccc gatgtgcggg ttctccagcc gctcggtcca ggcgctcaag gcggccggcg
      721 ccagcgggct gcataccgtc aacgtgctgg aagagccgga gatccgcgcc aacctgccgc
      781 gctattccaa ctggccgacg ttcccgcagc tgttcatcaa cggcgagctg atcggcggtt
      841 gcgacatcac cctcgagctg tacgaatcgg gcgagctcgc gcgcatgctc ggcgaggcgc
      901 agaaggcgtg agcgacgcgg tggcgaagcc gctcgcgggg cgcgtggtgc tcgtcaccgg
      961 cgcgcacggc ggcctcggca gcgccgcctc gcgcgcctgc gcgcgcgccg gcgcgaccct
     1021 ggtgctgctg ggccgccggg tgccgaagtt gaaccgcgtg cacgacgcca tcgtcgccga
     1081 gggcggcgag gcgttgctgt acccgctcga cctggagggc gcatcgccgg acgactacgc
     1141 ggagatggcg tcgcgcgtcg aaggggagct cggccgcctc gacggcctgc tgcattgcgc
     1201 cgccgagttc cgtggcctga ctccgctgct gcataccgat ccggccgtgt tcgcgcgcgc
     1261 gctccacgtc gacctaaccg cgccggcgtg gctgacccag gcctgcctgc cgctcctgat
     1321 gcgcgcggac gatgcagcag tcgtgttcac catcgacgac ctcgcccgcg tcggccaggc
     1381 gtactggggt ggctacggcg tcgccgagca tggcctcgcc gcgctggtgc gcatgctgca
     1441 tgccgaactc gcgaacagcc gcgtgcgcat cgccgggctc acgccggggc cgatgcgcac
     1501 cgcgctgcgt gcgatggcgt acgtcgagga ggacgaccag gtcgcgcgtg atcccgcgct
     1561 ctacgccgag gcctgcgtca cgctgctctc gcccgcgggc gccgggcatc gcggcaccat
     1621 ctggaacgtc gccccgcgcg aagccatcga cctgcccctg atgggcccgc ccgccgccgg
     1681 cacggggcgc gcatgaccat cgcctccgcc gcgctgctgc tgttcctgat cctcgatccg
     1741 ctcgggaaca tcccggtgtt cctgagcctg ctgcgccacc tgccgcagcg ccgccagcgc
     1801 gtcgtgctcg cgcgcgaact cgccatcgcg ctcggcgtgc tgatggcgtt cctgtggggc
     1861 ggcaagttcg gcctcgagct gatgcacctg cgacaggaat cggtgtcgat cgccggcggc
     1921 atcgtgctgt tcctgatcgg catccgcatg atcttcccgc cgccggaagg attgatgggc
     1981 gagctgccgg aaggcgagcc gttcatcgtc ccgatggcgg tgccgctggt cgcggggccg
     2041 tcgggcatgg cggcggtgat gctgatgggc agcaacgatc ctgcgcgcct gggcgactgg
     2101 agcctggcgc tgctgatcgc ctggagtgcg accgcggcga tcctgttttc cgcgacctac
     2161 ctctacaaat ggctcggctc gcgcgtgctc accgcggtcg agcggctgat gggcatgctg
     2221 ctggtcgcga tctcggtgca gatgctgctc gacggcctcg ccacctacct gcacgtcacg
     2281 ccgggcgcct gacgccgctt ccctgctgat gacgcccgcg tgcgccgcgc gctacagtcg
     2341 gggcgtctcc cgcgcgaagc cgacgatgga cgaattcgcc acgccccgcc tccccaccgt
     2401 caacgcccgc atctacccgc gcggcggcct cgacgtgctc tcgcgcgagg aggtgcagaa
     2461 gctgcgcgat gcatccgccg gcggcatgca cgaactgctg cgccgctgcg cgctcgccgt
     2521 gctcacctcc ggcagcacct ccgacgatcc gctcgccgcg cgcgagctct accacgactt
     2581 cgacatccag gtgctgcagc aggaccgcgg cctgcgcctg gacctgctca acgcgccggc
     2641 gatggccttc gtcgacggcg agatcatccg cggcgtcgcc gagctgctgt tcgcggtggt
     2701 acgcgacctc gtctatacct cggtggaact cgcgcccgaa tacgccgacg agctgtgcag
     2761 ctccgccggc atcaccgatg cggtgttccg cctgcttcgc aacgcacgcg tgctgcatcc
     2821 gggtgatccg aacctcgccg tctgctgggg cggccactcg atcaaccgcg acgagtacga
     2881 atacaccaag gaggtcggct acgagctcgg cctgcgcggg ctcgacatct gcaccggctg
     2941 cggtcccggc gcgatgaagg ggccgatgaa gggcgccacg atcgcgcacg ccaagcagcg
     3001 ccagcatcgt ccgcgctacc tcggcatcac cgagcccggg atcatcgccg ccgaatcgcc
     3061 caacccgatc gtcaaccacc tggtgatcat gccggacatc gagaagcgcc tcgaatcctt
     3121 cgtgcgcctc ggccacggca tcatcgtctt cccgggcggc gtcggtacct gcgaggagat
     3181 cctctacctg ctcggcatcc tgctgcgcga ggagaacgcg cagctgcctt tcccgctgtt
     3241 cttcaccggg cccgcggcgg ccgcgccgta tttcgagcag atcgaccgct tcctgcgcct
     3301 gaccctcggc gaggccgcca cctcgcgcta ccggatcgtg gtcggcgaca gcgccgaggt
     3361 cgcccggctc atggccgagg gcatccgcaa ggtgcgcgcc ttccgcgtcg cccagcagga
     3421 ttcgttcttc ttcaactggg cgatcgacat cccgctggcc ttccagcagc ccttcgtgcc
     3481 gacccacgaa gcgatggccg cgctcgacct gcaccacggg cgcaagccac aggacctcgc
     3541 cgccgacctg cgccgcgcct tctcggggat cgtcgccggc aacgtcaagg aagaggggat
     3601 ccgccgcgtc gaggaacacg gcccgtaccg catccacggc gacaggaaca tcgccgaggc
     3661 gctcgacgcc ctgctgcgcg gattcatcgc ccagcgacgg atgaagatcg ccggggaata
     3721 caggcccagt tacgagatcg tgggctgagc ggctacttcc gccagcagta ggcgacgttc
     3781 ttgttgtcgc tcatgcactg gctgatcacg ccggaggtcg ccgtgccgtc gcacgtcgat
     3841 ccgtagcgca tcacgaagtt cgcgcacttc gggtcggtgg cgaggtcgtt cttgcgggtg
     3901 gcggtgatca cgtaggcgct gccggtgttg ccggaaacgg acaccgtgta gttgttgagc
     3961 gagctgttga aattcgtgct cgcggtcgca cttccggtca ggtcgtccag cgttccgtac
     4021 gccgggttct cggcgcgcca ccgttcctcg cggagctgga actcgcccag cacccgcacc
     4081 gcctccgacc gcttgctctt gcgcacctgc tccagcaggc tcggcagggc gaaggccacg
     4141 atgatcgcga tcaccaccag cacgatcatc aactcgagca gcgtgaagcc cctggtgcca
     4201 gacctgcgca tggttgttcc ctccccggtg ggctgggatg gtagcacccg cccgccaacg
     4261 gagaagctgt cgcaaccgtc gttcatccgt caggggccgc cgcccgtccc caaccgcttg
     4321 cggctggcgc gacgcgagcc ttaggctccc gacgggatcg catgggggtg gttgcatatg
     4381 ccggtgggga acaggcagtc gggcttcacc atggtcgaac tgatggtcac gttgaccgtg
     4441 gcggccatcc tcgccgtgct ggcggcgccg tcgttcgcgg atttcatcga ccgcgcgcgg
     4501 ctgaagggcg tcgcgggcaa cgtggtcgac ttcatcaacg atgcgcgcgc agagagcgtc
     4561 aagcgcaacc gtgacgtgaa cgtcgccttc aagggcacca tcacggactg gtgcgtcggc
     4621 gccaacggcg ccggcgaacc ggcgacggcg ggcgatccgg tgccgcccct caatgcgtgc
     4681 gattgcacca atgcctcctc ctgcaaggtc ggcgcggacc agaag
//
LOCUS       DATIQC010000212         2847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_438079, whole genome shotgun sequence.
ACCESSION   DATIQC010000212 DATIQC010000000
VERSION     DATIQC010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438079"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..856)
                     /locus_tag="VLM17_04485"
     CDS             complement(<1..856)
                     /locus_tag="VLM17_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA--succinate CoA transferase"
                     /protein_id="HSR64846.1"
                     /translation="MNDRILDPRLAARRMSADAAAALIGPGDTVAMSGFTGAGYPKAV
                     PQALAARMQRAHARGEPFRVRVLTGASTAPELDGALARAHGMELRLPYQSDPEVRARI
                     NAGELEYIDIHLSHVAQHAWFGFFGEIDVALVEVAGINADGTLVPSSSVGNNKTWLEL
                     AGRVILEVNRWQPAALAGMHDIYYGTALPPHRQPIPLTRPDQRIGVPGLRVDPAKVIA
                     VVETDAPDRNTPFAPPDAESRRIAGHLLDFFAHEIRRGRLTPQLLPLQSGVGNIANAV
                     LAGLAGGGY"
     gene            973..1782
                     /locus_tag="VLM17_04490"
     CDS             973..1782
                     /locus_tag="VLM17_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HSR64847.1"
                     /translation="MQLIDIGANLTHDSFDHDRAAVLQRARDAGVARMVGTGASREHS
                     PKALALAQAHPGELFATAGVHPHHAGEYTAECDAEMRALLSHDEVVAVGECGLDYFRD
                     FSPRPAQRKAFERQLEIAADLAAAGRPKPLFLHQRDAHADFLAVMRGFEGRIGAAVVH
                     CFTGTRAELFDYLDRDWHVGITGWLCDERRGGHLRELAKEIPAARLMIETDAPYLLPR
                     TVRPQPAHRRNEPMYLAHIVAELARDRGEEVATTAAATSATARAFFGLPQG"
     gene            complement(1797..2330)
                     /locus_tag="VLM17_04495"
     CDS             complement(1797..2330)
                     /locus_tag="VLM17_04495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64848.1"
                     /translation="MRPRLAAWLFALTCAGCGPGGRPAGYVPDDAQQAQVEADIALAG
                     GAAAVPAATASAAAAAVAVPAGEGGISPIPAFHGGDRHWRIEIQSVGDLRHDVTLRQG
                     RARMPGTLTYRPLPGIGEDGPFDLDGALYAPQGDAPMHVHLEHASCLDAAGAHAWKVQ
                     VYVEGQAPRDGCGDVEM"
     gene            complement(2348..>2847)
                     /locus_tag="VLM17_04500"
     CDS             complement(2348..>2847)
                     /locus_tag="VLM17_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR64849.1"
                     /translation="IEELLVSPMPNWVILTGYVAGAVLRGLMVGAIVLLIAMFFTPVR
                     LPHPFVTLSTVLLGAIIFGLAGFINAIYAKKFDDVAIVPTFILTPLTYLGGVFYSVKL
                     LPAWAEAGTHLNPIFYMVNAFRYGLLGVTDVPLWVAYALMLAFTLVLGAIGLWLLRRG
                     VGLRS"
BASE COUNT          407 a         1025 c         1056 g          359 t
ORIGIN      
        1 ggtagccgcc gccggccagg cccgccagca ccgcgttggc gatgttgccc acgcccgact
       61 gcagcggcag cagttgcggc gtcagccggc cgcgccggat ctcgtgggcg aagaaatcga
      121 gcaggtgccc ggcgatccgc cgcgactccg catccggcgg cgcgaacggc gtgttgcggt
      181 cgggcgcgtc ggtctcgacc accgcgatca ccttggccgg gtccacccgc aggccgggca
      241 cgccgatgcg ctggtcgggc cgggtcagcg ggatcggctg gcggtgcggc ggcagcgcgg
      301 tgccgtagta gatgtcgtgc atgccggcca gcgccgccgg ctgccagcgg ttcacctcga
      361 ggatcacccg gccggcgagc tcgagccagg tcttgttgtt gccgaccgag gacgagggca
      421 ccagcgtgcc gtccgcgttg atgccggcga cctcgaccag cgccacgtcg atctcgccga
      481 agaagccgaa ccatgcgtgc tgggcgacgt ggctgaggtg gatgtcgatg tattcgagtt
      541 cgccggcgtt gatgcgcgcg cgcacttccg gatccgactg gtagggcagg cgcagttcca
      601 tgccgtgcgc ccgcgcgagc gcgccgtcga gttcgggcgc ggtcgacgcg ccggtgagca
      661 cgcgcacccg gaacggctcg ccgcgcgcgt gcgcccgctg catgcgcgcg gccagcgcct
      721 gcggcaccgc cttcggatag ccggcgccgg tgaagccgct catggccacc gtgtcgcccg
      781 gcccgatcag ggccgcggcc gcgtcggcgg acatgcggcg ggcggccagg cgcggatcga
      841 ggatgcggtc gttcatggcg gcgggcgcgg gggtcacgcc gagtctaggc cgccgccgcc
      901 gcacgcaccg cgaagtcgcg gcgggcgcgc ggcgcgcgcg ggcgccgccg gcggcgttgc
      961 tagaattccg cgatgcagtt gatcgacatc ggcgccaacc tcacccacga cagcttcgac
     1021 cacgaccgcg ccgcggtgct gcagcgtgcg cgtgacgccg gcgtggcccg gatggtcggc
     1081 accggcgcca gccgcgagca ttcgccgaag gcgctggcgc tcgcgcaggc gcatccgggc
     1141 gaactgttcg ccaccgccgg cgtgcacccg caccacgcgg gcgagtacac cgccgagtgc
     1201 gacgccgaga tgcgcgcgct gctgtcgcac gacgaggtcg tggcggtcgg cgaatgcggg
     1261 ctcgactatt tccgcgactt ctcgccgcgc ccggcgcagc gcaaggcctt cgaacgccag
     1321 ctggagatcg ccgccgacct cgccgccgcc ggcaggccca agccgctgtt cctgcaccag
     1381 cgcgacgcgc atgccgactt cctcgcggtg atgcgcgggt tcgagggccg catcggcgcc
     1441 gccgtcgtgc actgcttcac cggcacgcgc gcggagctgt tcgactacct cgaccgcgac
     1501 tggcacgtcg gcatcaccgg ctggctgtgc gacgagcgcc gcggcggcca cctgcgcgaa
     1561 ctggcgaagg agatccccgc cgcgcggctg atgatcgaga ccgacgcgcc ctacctgctg
     1621 ccgcgcacgg tcaggccgca acccgcgcac cggcgcaacg agccgatgta cctcgcgcac
     1681 atcgtcgcgg aactggcgcg cgaccgcggc gaggaggtcg ccaccacggc ggcggcgacc
     1741 tccgcgaccg cgcgcgcgtt cttcggcctg ccgcagggct gagccgccgc cgcgcgctac
     1801 atctcgacgt cgccgcaacc gtcgcgcggg gcctggccct cgacgtagac ctgcaccttc
     1861 caggcgtgcg cgccggcggc atcgaggcag ctggcgtgct ccaggtgcac gtgcatcggt
     1921 gcatcgccct gcggcgcata aagcgctccg tcgaggtcga acgggccgtc ctcgccgatg
     1981 ccgggcagtg gccggtaggt gagcgtgccc ggcatgcgcg cgcgaccctg gcgcagggtc
     2041 acatcgtggc gcaggtcgcc gaccgactgg atctcgatgc gccagtggcg gtcgccgcca
     2101 tggaaggcgg gaatcgggct gatgccgccc tcgcccgcgg gcaccgcgac tgcagcggcg
     2161 gcggcggaag ccgtggcggc gggaacagcg gcggcgccgc cggccagggc gatgtccgcc
     2221 tcgacctgcg cctgctgcgc gtcgtcgggc acgtacccgg ccgggcggcc gcccggcccg
     2281 caaccggcgc acgtcagcgc gaacagccag gcggcgagtc gggggcgcat ggcgcggttc
     2341 cggttcctca gctgcgcagg ccgaccccgc gccgcagcaa ccataggccg atcgcgccca
     2401 gcaccagcgt gaacgcgagc atcagcgcgt aggccaccca caggggcacg tcggtcacgc
     2461 cgagcaggcc gtaacggaac gcgttgacca tgtagaagat cgggttgagg tgggtaccgg
     2521 cttccgccca agccggcagc agcttgaccg aatagaacac gccgccgagg taggtgagcg
     2581 gggtgaggat gaacgtcggc acgatcgcga cgtcgtcgaa cttcttcgcg tagatggcgt
     2641 tgatgaagcc ggcaaggccg aagatgatcg cgccgagcag caccgtgctg agggtgacga
     2701 agggatgcgg caggcgcacc ggggtgaaga acatcgcgat caggagcacg atcgcgccga
     2761 ccatcagccc gcgcagcacc gccccggcga cgtagccggt gaggatcacc cagttcggca
     2821 tcgggctgac cagcagttcc tcgatgt
//
LOCUS       DATIQC010000213         3598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_85015, whole genome shotgun sequence.
ACCESSION   DATIQC010000213 DATIQC010000000
VERSION     DATIQC010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85015"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..716
                     /locus_tag="VLM17_04505"
     CDS             126..716
                     /locus_tag="VLM17_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR64850.1"
                     /translation="MSPNRLLPLLLPALLALPAAAQPVTYVIDPMHTFPSFEADHMGM
                     SVWRGRFDHTRGDVVLDRQAGTGSVSVTVDMASVDFGLPLLDAELAKPAYFDIARHPT
                     ATFAGRLAGFVDGKPTRAEGTLTFRGVSRPLTLDIKSFKCMPHPVFKRDWCGADAYAT
                     INRADFGMDAGKDYGFRMDVGLRIQVEALAAKQDAP"
     gene            complement(713..1270)
                     /locus_tag="VLM17_04510"
     CDS             complement(713..1270)
                     /locus_tag="VLM17_04510"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSR64851.1"
                     /translation="MTTSDDQAAPRRSLLERQRMALDLIRSDAPLDEVLSLLCHIVEA
                     EAEQPVRASILLVDPAGPCLRTGAAPGLPDAYNRAVDGIGISSEVGTCAAAAALDTVV
                     TTPDIGADPRWAGLAHLPLGLGLVAAWSMPIRRADGTVLGTLGTYFTERREPSGHEVE
                     LVAFLAPTAALAIERAASARSVLPA"
     gene            1478..3496
                     /locus_tag="VLM17_04515"
     CDS             1478..3496
                     /locus_tag="VLM17_04515"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HSR64852.1"
                     /translation="MSRSRLPLVLLLAAGTASAGSLHGIIPGDIDRNANACTDFFQYA
                     NGTWRQQHPIPAYMDRWSRRWESGEVNKEHVRDILTEVSAKSDWPAGSAQQLSGDYYA
                     ACMDERAVNARGLAPVQPWLDEVSHVRTKADLQRTIGHLHDVGIGVPFQLGSTQDPHN
                     PSQVIAGIGAGGLGLPDRDYYLKPDQRFVEARARYLEHVARVFTLAGAKPADAKAAAN
                     TVFAFEKRLAQASLDNVALRDPHQLDHPTTFAGLQKMAPALDWNAYFDAAKLPRADLI
                     VTEPKFLQEVNQELSATPLDQWRTYLRWHVLRSASDALPEPFVQEKFAFYGKYLSGAT
                     EMKPRWKRCAEDVDAQLGEALGHAYVEKYFPPEAKARMQDMVKNILLAMHDTIGGLDW
                     MTPATKARALEKLSTFNPKIGYPDKWKTYDGVHVTRGSYFDDAVAAARWNVQDDRSQI
                     GKPVDRTRWGMTPPTSNAYYNPLLNEIVFPAGILQPPAFDMNATDAANYGAIGVVIGH
                     EISHGFDDQGSQFDAHGALVNWWTPEDNARFAAKGQCVVKQFDNTFIAPGLHHNGKLV
                     LGESIGDLAGAKIAYRAYLKSREGKGPEPTIDGFTPAQQFFIAWGQWRGDETRMETQR
                     TMIQGDPHPVAKYRVNGPLSNLPEFRQAFQCNVGDPMVRPEAERCEVW"
BASE COUNT          592 a         1330 c         1201 g          475 t
ORIGIN      
        1 gcaggcgtca gcgcagcgcg ggtgagcgcc gcgcacatgg ttgtcgatcc gccgcccgcc
       61 cgttcgtcgc cagtccaagg acgcaatgcc gaagcgcccc catccgaacg atacggagtc
      121 ccaccatgtc cccgaaccgc ctcctgccgc tcctgctccc cgcgctgctc gcgctccccg
      181 cggccgcgca gcccgtgacc tacgtgatcg accccatgca caccttcccg agcttcgagg
      241 ccgaccacat gggcatgtcg gtctggcgcg gccggttcga ccacacgcgc ggggacgtgg
      301 tgctggacag gcaggcgggc accggcagcg tgtcggtcac ggtcgacatg gcgagcgtgg
      361 acttcggcct cccgctgctc gacgccgaac tggccaagcc ggcgtacttc gacatcgccc
      421 gccatcccac cgccacgttc gcgggcaggc tcgccggctt cgtcgacggc aagccgacgc
      481 gcgcggaggg cacgctcacc ttccgcggcg tgagccgtcc gctgacgctc gacatcaagt
      541 cgttcaagtg catgccgcac ccggtgttca agcgcgactg gtgcggcgcc gatgcctacg
      601 ccacgatcaa ccgcgccgac ttcggcatgg acgcgggcaa ggactatggc ttccgcatgg
      661 acgtcggcct gcgcatccag gtggaggcgc tcgccgcgaa gcaggacgcg ccctaggcgg
      721 ggaggacgga ccgcgcgctg gcggcgcgtt cgatcgccag tgccgccgtc ggcgcgagga
      781 acgccaccag ttccacttcg tgcccgctcg gctcccgccg ttcggtgaaa taggtgccga
      841 gcgtgcccag cacggtgccg tccgcgcgcc ggatcggcat cgaccacgcc gcgaccaggc
      901 cgaggcccag cggaaggtgg gccagtccgg cccagcgcgg atcggcgccg atgtccgggg
      961 tggtcaccac cgtgtcgagc gccgcggccg cggcacaggt ccccacttcg cttgagatgc
     1021 cgatgccatc gaccgcccgg ttgtacgcat ccggcaggcc cggcgcggcg ccggtgcgca
     1081 ggcaggggcc ggccgggtcc accagcagga tcgaggcgcg caccggctgc tcggcctcgg
     1141 cctcgacgat gtggcagagc agggacagga cctcgtccag cggggcgtcg ctccggatca
     1201 gatccagcgc catgcgctgg cgttccagca gggagcgtcg gggtgcggcc tggtcatcgc
     1261 tggtggtcat gcgcggcgtt cggctcgagt ccggcagact ctacacggcg gctcgacgct
     1321 cgcctccaca ccccgtgaag acgcccgcct tgccgaagcc gccacgcgtg cggtggcgcg
     1381 cggcggatcg ccgcatccgg accgggacct ccgggagggt tgcgcgcgcc ggcggctggt
     1441 tatagtcgac cgacttcgcc agccaaggaa tgccgccgtg agccgctccc gccttccact
     1501 cgtcctgctc ctcgccgccg gcaccgcctc ggccggctcc ctgcacggca tcatccccgg
     1561 cgacatcgac cgcaacgcca acgcctgcac tgacttcttc cagtacgcca acggcacgtg
     1621 gcgccagcag cacccgatcc cggcctacat ggaccgctgg agccggcgct gggaatcggg
     1681 cgaggtcaac aaggaacacg tgcgcgacat cctcaccgag gtgtcggcga agagcgactg
     1741 gccggcgggc agcgcgcagc agctgtcggg cgactactac gccgcgtgca tggacgagcg
     1801 tgcggtgaac gcgcgcggcc tcgcgccggt gcagccgtgg ctggacgagg tgtcgcacgt
     1861 caggacgaag gccgacctgc agcgcaccat cggccacctg cacgacgtcg gcatcggggt
     1921 gcccttccag ctcgggtcga cccaggaccc gcacaatccc agccaggtca tcgccggcat
     1981 cggcgccggc ggcctcggcc tgccggatcg tgactactat ctcaagcccg accagcgctt
     2041 cgtcgaagcg cgcgcccggt acctcgagca cgtcgccagg gtgttcacgc ttgccggcgc
     2101 gaagcccgcc gacgcgaagg ccgccgccaa caccgtgttc gccttcgaga agcgcctcgc
     2161 ccaggcctcg ctcgacaacg tcgcgctgcg cgatccgcac cagctcgacc acccgaccac
     2221 cttcgccggc ctgcagaaga tggcgccggc gctcgactgg aacgcgtatt tcgacgcggc
     2281 gaagctcccg cgcgccgacc tgatcgtgac cgagccgaag ttcctgcagg aggtcaacca
     2341 ggaactgtcg gcgacgccgc tcgaccagtg gcgcacctac ctgcgctggc acgtgctgcg
     2401 cagcgcctcg gacgcgctgc ccgagccctt cgtgcaggag aagttcgcct tctacggcaa
     2461 gtacctcagc ggcgcgaccg agatgaagcc gcgctggaag cgctgcgccg aggacgtcga
     2521 cgcacagctc ggcgaggcgc tcggccacgc ctacgtcgag aagtacttcc cgccggaagc
     2581 caaggcacgc atgcaggaca tggtgaagaa catcctgctg gcgatgcacg acaccatcgg
     2641 cggcctcgac tggatgacgc cggcgacgaa ggccagggcg ctcgagaaac tgtcgacctt
     2701 caacccgaag atcggctacc ccgacaagtg gaagacctac gacggcgtgc acgtcacgcg
     2761 cggctcgtac ttcgacgatg cagtggccgc cgcgcgctgg aacgtccagg acgaccgcag
     2821 ccagatcggc aagccggtcg accgcacgcg ctggggcatg acgccgccga cgtcgaacgc
     2881 ctactacaac ccgctgctca acgagatcgt gttccccgcc ggcatcctgc agccgccggc
     2941 cttcgacatg aacgccaccg acgccgccaa ctacggcgcg atcggcgttg tcatcggcca
     3001 cgagatcagc cacggcttcg acgaccaggg ctcgcagttc gacgcgcacg gcgcgctggt
     3061 caactggtgg acgccggaag acaacgccag gttcgcggcc aagggacagt gcgtggtgaa
     3121 gcagttcgac aacaccttca tcgcgccggg cctgcaccac aacggcaagc tggtgctggg
     3181 cgaatccatc ggcgacctcg ccggcgccaa gatcgcctac cgcgcgtacc tcaagtcgcg
     3241 cgaaggcaag ggccccgagc cgaccatcga cggcttcacg cccgcgcagc agttcttcat
     3301 cgcgtggggc cagtggcgcg gcgacgagac gcgcatggag acgcagcgca ccatgatcca
     3361 gggcgacccg cacccggtcg ccaagtaccg cgtcaacggc ccgctgtcga acctgcccga
     3421 gttccgccag gcgttccagt gcaacgtcgg cgatccgatg gtgcggccgg aggcggagcg
     3481 ctgcgaggtg tggtgacggt gcccggcagg ggacgacgag cccatcgctc gtcgtcaatg
     3541 acgccgggca cgcccatcgc ctccaacggc cgtcaatcga cgacgcagcg aaggggcc
//
LOCUS       DATIQC010000214         2439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_473957, whole genome shotgun sequence.
ACCESSION   DATIQC010000214 DATIQC010000000
VERSION     DATIQC010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473957"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..652)
                     /locus_tag="VLM17_04520"
     CDS             complement(<1..652)
                     /locus_tag="VLM17_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017355216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HSR64853.1"
                     /translation="MSFPVRAITLDLDDTLWPIAPAIDRAEAALDAFLATHAPRTHAR
                     WPLPARRALRDAVDAEHPQLAHDFTRQRLITLERMLRAAGDDVSLVDAAFEAYFAARC
                     EVEHYPDSVPALERLAARVPLASISNGNACLVRIGLIHLFRFQLGAREHGAAKPEASI
                     FLAACERLGCAPGVVLHVGDHIEMDVAGAARAGLRSCWINREDRGWQHDEVVPDLQF"
     gene            complement(708..1835)
                     /locus_tag="VLM17_04525"
     CDS             complement(708..1835)
                     /locus_tag="VLM17_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSR64854.1"
                     /translation="MADESPGELTPAPVPLPSAQPAPPAPRPRPRSPTALVVLATLAV
                     GYTLWAAQALLLPVLLALFFALVGNPILRLLQRLWIPRFLGAALLLALGLAGTYQLGH
                     QLVAPAAEWIHEVPREMRDLAPKLRSLVRPVQEANKAAENIARAAGGESATRPVQVVK
                     TEANEPFKALSATPRMVTSVLAVVLLTFFFMVYGQSLQKNAIALLPGRQQQRLTVEIL
                     QSIEHEISRYVLTISIINAVFGLLYAAVLHLALDVPVDDALLWGTMAALLNFAPYVGP
                     LIGMLVMLLMGFVSYTDPWQSLLPAVVYLGLHTLEGQLITPIILGARMALSPLVLILA
                     LMVFGWLWGIVGLLLAVPLLVCVKLVLNRVGGMEGWARLLE"
     gene            complement(1841..2251)
                     /locus_tag="VLM17_04530"
     CDS             complement(1841..2251)
                     /locus_tag="VLM17_04530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64855.1"
                     /translation="MSFEALIDKVKQAEAALEAHERQASADWRQLKASWTQLWTPGRL
                     LLAGIGSGAAIGLLEPGKRLASGRGTLQMLSAVAGLFAGGSAQVAAGKAEDAADQAAQ
                     ATAADDAGIAPMAVAEPVRAAANDPEALRRAGLL"
BASE COUNT          338 a          868 c          926 g          307 t
ORIGIN      
        1 tgaactgcag gtcgggcacg acctcgtcgt gctgccagcc gcgatcttcg cggttgatcc
       61 agcagctgcg caggccggcg cgggcggcgc cggccacgtc catctcgatg tggtcgccga
      121 cgtgcaggac cacgcccggc gcgcagccca ggcgctcgca cgcggccagg aagatgctgg
      181 cttcgggctt ggccgcgccg tgctcgcgcg cgccgagctg gaagcggaac aggtggatca
      241 ggccgatgcg gacgaggcag gcgttgccgt tgctgatcga ggccagcggc acgcgcgcgg
      301 cgaggcgctc cagcgccggc acgctgtcgg gatagtgctc gacctcgcag cgcgcggcga
      361 aataggcctc gaacgcggcg tcgaccagcg agacgtcgtc gccggccgcg cgcagcatgc
      421 gctccagcgt gatcagccgc tggcgggtga agtcgtgggc gagctgcggg tgctcggcgt
      481 cgaccgcgtc gcgcagggcg cgccgcgcgg gcagcggcca gcgcgcgtgg gtgcgcggcg
      541 cgtgcgtcgc caggaaggcg tcgagcgcgg cttccgcgcg gtcgatcgcc ggcgcgatcg
      601 gccacagggt gtcgtcgaga tcgagggtga tggcgcggac ggggaagctc accggcgcat
      661 tctagcgccg cgggcgcggg cggccggtgg cgccgtggtc gcgcctgcta ctccagcagt
      721 cgcgcccagc cttccatgcc gccgacgcgg ttcagcacca gcttcacgca caccagcagc
      781 ggcaccgcca gcagcaggcc gacgatgccc cacagccagc cgaagaccat cagcgccagg
      841 atcagcacca gcggcgacag cgccatgcgc gcgccgagga tgatcggcgt gatcaactgg
      901 ccttccagcg tgtgcaggcc gaggtacacg acggccggca gcagcgactg ccacggatcg
      961 gtgtagctga cgaagcccat cagcagcatc accagcatgc cgatcagcgg gccgacgtag
     1021 ggcgcgaagt tgagcagcgc ggccatcgtg ccccacagca gcgcgtcgtc caccggcacg
     1081 tccagcgcga ggtgcagcac cgccgcgtag agcaggccga acaccgcgtt gatgatgctg
     1141 atggtgagca cgtagcgcga gatctcgtgc tcgatcgact gcaggatctc gaccgtgagc
     1201 cgctgctgct ggcgcccggg cagcagcgcg atcgcgttct tctgcaggct ctgcccgtag
     1261 accatgaaga agaacgtcag cagcaccacc gccagcaccg aggtgaccat ccgcggggtc
     1321 gcgctgagcg ccttgaaggg ctcgttggcc tcggtcttga ccacctgcac cggccgcgtc
     1381 gcgctttcgc cgccggcggc gcgggcgatg ttctcggcgg ccttgttcgc ctcctgcacc
     1441 ggccggacca gcgagcgcag cttgggggcg aggtcgcgca tctcgcgcgg cacttcgtgg
     1501 atccattcgg ccgccggcgc gaccagctgg tggccgagct ggtaggtgcc ggcgaggccg
     1561 agcgcgagca gcagcgcggc gccgaggaag cgcgggatcc acagccgctg cagcaggcgc
     1621 aggatcgggt tgccgaccag ggcgaagaac agcgccagca gcaccggcag cagcagcgcc
     1681 tgcgcggccc acagggtgta gccgaccgcg agcgtggcca gcacgaccag cgcggtcggc
     1741 gagcgcggac gcgggcgcgg cgcgggaggt gcgggctgcg ccgacggcag cgggaccggc
     1801 gcgggcgtga gctcgccggg cgattcgtcg gccatgcgcg tcacagcagg cccgcgcggc
     1861 gcagcgcttc gggatcgttg gccgcggcgc gcaccggttc ggcgaccgcc atcggggcga
     1921 tgcccgcgtc gtccgcggcg gtcgcctgcg cggcctggtc ggccgcatcc tcggccttgc
     1981 ccgcggcgac ctgggcgctg ccgccggcga acaggccggc gaccgcgctg agcatctgca
     2041 gcgtgccgcg gccgctggcg aggcgcttgc cgggttccag caggccgatc gcggcgccgc
     2101 tgccgatgcc cgcgagcagc agccgcccgg gcgtccacag ctgcgtccac gacgccttca
     2161 gctggcgcca gtcggcgctg gcctggcgct cgtgcgcttc cagcgccgcc tcggcctgtt
     2221 tcaccttgtc gatcagggcc tcgaagctca tggcgtgcgt gccggtgcgg aaggaacgtt
     2281 cagggcgggg tgacgtcgac gccgaggtcc ggcttgaccg gacgcgcgtc ggtggcctcg
     2341 gcgacgcgct cggtcgcgcg cttcgcgctc gcgccggaac ccgcgccggg caccagcttc
     2401 gacagttcgc cgacgcccag ccgcgccagc tggcggcgc
//
LOCUS       DATIQC010000215         6010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_508795, whole genome shotgun sequence.
ACCESSION   DATIQC010000215 DATIQC010000000
VERSION     DATIQC010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6010
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508795"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..1172)
                     /gene="sucC"
                     /locus_tag="VLM17_04535"
     CDS             complement(9..1172)
                     /gene="sucC"
                     /locus_tag="VLM17_04535"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HSR64856.1"
                     /translation="MNFHEYQAKQLFADYGIAVPAGRVARTADEAVEAAKAIGGDFWV
                     VKAQIHAGGRGKAGGVKLAKTLDQVRDYADGMLGTKMATYQSAGVALPVDSVLVTQAT
                     DIAKELYLSVLVDRATRSVTFIASAEGGVEIEKVAEENPEAIKSLHVNFVQGLQPYQC
                     REMGFALGLNAKQVNQLTKIMLGLYKLFNEKDLSLVELNPLAILTDGNLAVLDGKVNS
                     DDNATFRHAELAAMRDIRQEDETEVKASQHDLNYVTMDGNIGCMVNGAGLAMATMDVI
                     KLNGGEPANFLDVGGGANKERVTEAFKLILSSDKVKAIFVNIFGGIVRCDMIAEGIIH
                     AVKDVGVKVPVVVRIEGTNAEQGRKLLADSGLAITAATDLTDAAKKVVKAAKK"
     gene            1342..2952
                     /locus_tag="VLM17_04540"
     CDS             1342..2952
                     /locus_tag="VLM17_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64857.1"
                     /translation="MPTGFVPRLVLFGPGDAEQRRELYFFSLYRVFEAALLALVLFTP
                     PGVLVEAPRHLLLGQASALVYLVASWVLLYWVYRRRPLGAQVMLGAATDIAAATLASH
                     ALPASAPGIALMLLFNVGSAALLLPWRYGLAGGALASAALIGEYLWSVLRDTSDARPL
                     AERVMFAVSFMAIAMLTNLLGRQMRESRALAERRGAELADLAEVNELIIRRMRTGVLL
                     VDGDGRIRLANEAAQALLGEHDDERNLALAAPELSRRMRLWLEDGQASDAPLRLGGES
                     AEVLPRFARLRANGESVLVFLDDTALVSRRAESMTLATLGRFSASLAHEIRNPLAAIS
                     YATQLLEESSEISQGDRRLLQIIHQQCLRTNGIVESVLGIARRERANAEHVDLTAFAR
                     RFVEDYRQVLQPEAGSLQVVGDPVPVPSMVDPRHLQQILTVLVQNALTYGRLPNAPAR
                     VTIAVRMQDGRPAVEVSDRGPGIPEGNASQLFRPFFTTSEHGTGLGLYIARELARAND
                     ASLEYVPMPGGGSCFRLLLAGVHALVPA"
     gene            3102..4514
                     /locus_tag="VLM17_04545"
     CDS             3102..4514
                     /locus_tag="VLM17_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSR64858.1"
                     /translation="MTDPRGTPPSALIVDDEHDIRELLVLTLGRMGLRTETAATLAAA
                     RAQLANARYDLCLTDMRLPDGSGIELVAEITARHPNTPTAVITAFGNVEAAVDALKAG
                     AFDFVSKPVDLNVLRGLVKHALELGAQRREQTAKVRAEAGISRLGGDSPAMQALRSTV
                     AKVARSQAPIYIVGESGVGKELVARTIHAESSRAAGPFVPVNCGAIPAELMESEFFGH
                     KKGSFTGAHADKPGLFQSADGGTLFLDEIAELPLPMQVKLLRAIQEKSIRPVGAAAEV
                     PVDVRILSATHKDLSALVADGRFRHDLYYRINVIELKVPPLRERGDDLPQLAAGILSR
                     LSQAQRRPAPVLGEDAAAALRAYPFPGNVRELENVLERALALADDDVILASDLRLPTA
                     SSAAHVPVAPPPSAPRDPRTLDPRESATSALPSYIEEIERAAIQQALVENRYNKTKAA
                     AALGITFRALRYKLKKLGID"
     gene            4759..5217
                     /locus_tag="VLM17_04550"
     CDS             4759..5217
                     /locus_tag="VLM17_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007513901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilin"
                     /protein_id="HSR64859.1"
                     /translation="MKQIKNRNMQGFTLIELMIVVAIIAILAAIAISQYQDYVIRSQV
                     SEGSSLADGVKTAVGEYVNNRGTYPSANGSAGLATNTSIVGTYVSQVDVAGGPVVVTY
                     SNTAPQKANVAINTKTLTFSPTTTAGSITWACKSTTLKQKWCPSSCTCTG"
     gene            5285..>6010
                     /locus_tag="VLM17_04555"
     CDS             5285..>6010
                     /locus_tag="VLM17_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008210242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR64860.1"
                     /translation="MSFRRSWPLPALLALLFATWLAYAPGLSGGFLFDDYVNLDALGA
                     TGPVHDGAAFWRYLTSGSADPIGRPLALLSFLLDGRDWPADPAPFLRTNLFLHLANGA
                     LLFALLRLLGRRLDGPGARTEAIALFAAGLWLLHPLFVSTTLYIVQREAMLPATFTLL
                     GLLAWVHGRTRLDAGARRAGLAWMLGGLALGTALAMLSKANGILLPLLAWVLEATVLR
                     AGAARPLPRAFRFGALVLPSAVVF"
BASE COUNT          820 a         2253 c         1996 g          941 t
ORIGIN      
        1 acccttgatt acttcttcgc ggccttcacg actttcttcg ccgcgtcggt gaggtcggtc
       61 gcagcggtga tcgcaaggcc gctgtcggcg aggagcttgc ggccctgctc ggcattcgtt
      121 ccttcgatgc gcacgacgac cggcactttc acgccgacgt ccttcaccgc atgaatgatg
      181 ccttcggcga tcatgtcgca gcggacgatg ccgccgaaga tgttgacgaa gatcgccttc
      241 accttgtcgc tcgagaggat cagcttgaac gcctcggtca cgcgctcctt gttggcgccg
      301 ccgccgacgt cgaggaagtt cgccggctcg ccgccgttga gcttgatgac gtccatcgtc
      361 gccatcgcca ggcccgcgcc gttgaccatg cagccgatgt tgccgtccat ggtcacgtag
      421 ttgaggtcgt gctggctggc cttgacctcg gtctcgtcct cctggcggat gtcgcgcatc
      481 gcggccagtt cggcgtggcg gaaggtcgcg ttgtcgtcgg agttgacctt gccgtcgagc
      541 accgcgaggt tgccgtcggt gaggatggcg agcgggttga gctcgaccag cgagaggtcc
      601 ttctcgttga acagcttgta caggcccagc atgatcttgg tcagctggtt gacctgcttg
      661 gcgttgaggc cgagcgcgaa gcccatctcg cggcactggt agggctgcag gccctgcacg
      721 aagttcacgt gcagcgactt gatcgcctcc gggttctcct cggcgacctt ctcgatctcg
      781 acgccgccct cggcggacgc gatgaaggtg accgagcggg tggcgcggtc caccaggacc
      841 gacaggtaca gctccttggc gatgtcggtg gcctgggtga cgagcacgct gtcgacgggc
      901 agcgcgacgc cggccgactg gtaggtcgcc atcttcgtgc cgagcatgcc gtcggcgtag
      961 tcgcgcacct ggtccagggt cttggcgagc ttgacgccgc cggccttgcc gcggccgccc
     1021 gcgtggatct gggccttgac cacccagaag tcgccgccga tggccttggc ggcctcgacg
     1081 gcctcgtccg ccgtgcgcgc gacgcgcccg gccggcaccg cgatgccgta gtcggcaaac
     1141 aactgcttcg cctgatattc gtggaagttc atgcgtcacc agcaagggga ggaagctccg
     1201 cgcgcgaggg cggccggctc gggccgcggg cgcgaaggac tcccattgtc gccgatgggg
     1261 ccggcacggg caaaacggcc cctcgccgga aaacgcccga tcgcggcata ctcgccgcga
     1321 cttccgcgcc aggccgcccg cttgccgacc ggcttcgtcc cccgcctcgt gctgttcggc
     1381 cccggcgacg cagaacagcg tcgcgagctg tatttcttca gcctgtaccg tgtgttcgag
     1441 gcggcgctgc tggcgctggt gctgttcacc ccgccgggcg tgctggtcga ggcgccgcgc
     1501 cacctgctgc tgggccaggc cagcgccctt gtctacctgg tcgcctcctg ggtgctgctg
     1561 tactgggtgt accgccgccg tccgctcggc gcgcaggtga tgctcggcgc cgccaccgac
     1621 atcgccgcgg cgaccctcgc cagccacgcc ctgccggcgt cggcgccggg gatcgcgctg
     1681 atgctgctgt tcaacgtcgg ctcggccgcg ttgctgctgc cgtggcgcta cggcctggcc
     1741 ggcggcgcgc tcgcctccgc ggcgctgatc ggcgaatacc tgtggagcgt gctgcgcgac
     1801 accagcgacg cgcgcccgct ggccgagcgg gtgatgttcg cggtcagctt catggcgatc
     1861 gcgatgctca ccaacctgct cggccggcag atgcgcgaga gccgcgcgct ggccgagcgc
     1921 cgcggcgccg agctcgccga cctggccgaa gtcaacgagc tgatcatccg ccgcatgcgc
     1981 acgggcgtgc tgctggtcga tggcgacggc cgcatccgcc tcgccaacga ggccgcgcag
     2041 gcgctgctgg gcgagcacga cgacgagcgc aacctggcgc tcgccgcgcc ggagctgagc
     2101 cgccgcatgc ggctgtggct ggaggatggc caggccagcg acgcgccgct gcggctgggc
     2161 ggcgaatcgg ccgaggtgct gccgcgcttc gcccgcctgc gcgccaacgg cgagagcgtg
     2221 ctggtgttcc tcgacgacac cgcgctcgtc tcgcgccggg ccgagtcgat gaccctggcc
     2281 acgctcggcc gtttctccgc cagcctcgcg cacgagatcc gcaacccgct tgccgcgatc
     2341 agctacgcga cgcagctgct ggaggaatcc agcgagatct cccagggcga ccgccgcctg
     2401 ctgcagatca tccaccagca atgcctgcgc acgaacggca tcgtcgaaag cgtgctcggc
     2461 atcgcccggc gcgaacgcgc caacgccgag cacgtcgacc tcaccgcgtt cgcgcgccgc
     2521 ttcgtcgagg actaccgcca ggtgctgcag ccggaagccg gctcgctgca ggtggtgggc
     2581 gatccggtgc cggtgccgtc gatggtcgat ccgcgccacc tgcagcagat cctgaccgtg
     2641 ctggtgcaga acgcgctcac ctacggccgc ctgccgaacg cgccggcgcg ggtgacgatc
     2701 gcggtgcgca tgcaggacgg gcggccggcc gtcgaggtca gcgaccgcgg cccgggcatt
     2761 cccgaaggca acgcctcgca gctgttccgg cccttcttca ccacctccga gcacggcacc
     2821 ggcctgggcc tgtacatcgc gcgcgaactc gcccgcgcca acgacgccag cctcgagtac
     2881 gtgccgatgc ccggcggcgg cagctgcttc cggctgctgc tcgcgggcgt gcacgcgctg
     2941 gtcccggcct gagccgcgac ccctgttgtt ttccgccggc cggccgataa gccggcgagg
     3001 gtgcgtccgg ccgcggcggg cgggagctga attcttcagc ccccgggcac ccatgacctc
     3061 ggccatttgg cccgtcttca cccttccgtt atggtgtagg aatgaccgac cctcgcggca
     3121 ccccgcccag cgcgctgatc gtcgacgacg agcacgacat ccgcgaactg ctggtgctga
     3181 cgctgggccg catgggcctg cgcaccgaga ccgccgccac cctcgccgcc gcgcgcgcgc
     3241 agctggcgaa cgcccgctac gacctgtgcc tgaccgacat gcgcctgccc gacggctcgg
     3301 gcatcgagct ggtcgccgag atcaccgccc gccaccccaa cacgccgacc gcggtgatca
     3361 ccgccttcgg caacgtggaa gccgcggtcg acgcgctgaa ggccggcgcc ttcgacttcg
     3421 tcagcaagcc ggtcgacctc aacgtgctgc gcgggctggt caagcacgcg ctcgagctcg
     3481 gcgcgcagcg ccgcgagcag accgccaagg tgcgcgccga ggccggcatc tcgcgcctgg
     3541 gcggcgactc gccggcgatg caggcgttgc gctcgacggt ggccaaggtc gcgcgcagcc
     3601 aggcgccgat ctacatcgtc ggcgagtccg gcgtgggcaa ggaactggtc gcccgcacca
     3661 tccacgccga gagcagccgc gccgccggcc cgttcgtgcc ggtcaactgc ggggcgatcc
     3721 cggccgagct gatggagagc gagttcttcg gccacaagaa gggcagcttc accggcgcgc
     3781 atgccgacaa gcccggcctg ttccagagcg ccgacggcgg caccctgttc ctcgacgaga
     3841 tcgccgagct gccgctgccg atgcaggtca agctgctgcg cgcgatccag gagaagtcga
     3901 tccgcccggt cggcgccgcg gccgaggtgc cggtcgacgt gcgcatcctc tcggccacgc
     3961 acaaggacct gtcggcgctg gtcgccgacg gccgtttccg ccacgacctc tactaccgca
     4021 tcaacgtcat cgagctgaag gtgccgccgt tgcgcgagcg cggcgacgac ctgccgcagc
     4081 tggccgccgg catcctctcc cgcctgtcgc aggcgcagcg ccggcccgcg ccggtgctcg
     4141 gcgaggacgc cgccgccgcc ctgcgcgcct atcccttccc gggcaacgtg cgcgagctcg
     4201 agaacgtgct cgaacgcgcc ctcgccctcg ccgacgacga cgtcatcctc gccagcgacc
     4261 tgcgcctgcc caccgcgtcg agcgcggccc acgtcccggt cgccccgccg ccgtccgccc
     4321 cgcgcgaccc gcgcaccctc gacccccgcg aaagcgccac cagcgccctg ccctcctaca
     4381 tcgaggagat cgagcgcgcc gcgatccagc aggccctggt cgagaaccgc tacaacaaga
     4441 ccaaggccgc cgcggcgctg ggcatcacct tccgcgcgct gcgctacaag ctgaagaagc
     4501 tgggcatcga ctgaggccgg ccgggctgca cggaactgac gcatcgcgtc actttcgatc
     4561 tctgtgcgtc atgccggaaa cgccccgcct ccgcttccgt gacccgcgcc tcacttcact
     4621 ttccaccggc gtccgctgtc cgctttggca cgggacgtgc gtatccttac ccgcacgtgc
     4681 tcaaggcacg gcaccctcgg atccggaacc gaaccgggcc gcgggcacgt gaaaatcgac
     4741 tctcctaggg gatacaccat gaagcagatc aagaaccgca acatgcaggg cttcaccctg
     4801 atcgagctga tgatcgtggt cgcgatcatc gcgatcctgg ccgccatcgc catcagccag
     4861 taccaggact acgtgatccg ttcgcaggtc tcggaaggct cgtcgctggc cgacggcgtc
     4921 aagaccgcgg tgggcgagta cgtcaacaac cgcggcacct acccgagcgc caacggctcg
     4981 gcgggcctgg ccaccaacac ctcgatcgtc ggcacctacg tgtcgcaggt cgacgtggcg
     5041 ggcggcccgg tggtcgtgac ctactccaac accgcgccgc agaaggccaa cgtcgcgatc
     5101 aacaccaaga ccctgacgtt ctcgccgacc accaccgccg gcagcatcac ctgggcctgc
     5161 aagagcacca cgctcaagca gaagtggtgc ccgagcagct gcacctgcac cggctaagcg
     5221 acatctgccg catcgttgtg ggaaagggcc gcatgcggcc ctttcctttt atgggctgac
     5281 cgccgtgtcc ttccgccgtt cctggccgct gccggccctg ctcgcgctgc ttttcgccac
     5341 ctggctggcg tatgcgccgg ggctgtcggg cggcttcctg ttcgacgatt acgtcaacct
     5401 cgacgccctc ggcgcgaccg gccccgtgca cgacggcgcc gcgttctggc gctacctcac
     5461 ctccggcagc gccgacccga tcggccgccc gctggccctg ctgagcttcc tgctcgacgg
     5521 ccgcgactgg ccggccgacc ccgcgccctt cctgcgcacc aacctcttcc ttcacctcgc
     5581 caacggcgcg ctgctgttcg cgctgctgcg cctgctcggc cgccgcctcg acgggcccgg
     5641 cgcgcggacc gaggcgatcg ccctgttcgc cgccggcctg tggctgctgc atccgctgtt
     5701 cgtctcgacc accctgtaca tcgtgcagcg cgaggcgatg ctgccggcca ccttcaccct
     5761 gctcgggctg ctcgcctggg tgcacggccg cacccggctg gacgccggcg cgcgccgcgc
     5821 cggcctggcc tggatgctgg gcgggctcgc gctcggcacc gcgctggcga tgctcagcaa
     5881 ggccaacggc atcctgctgc cgctgctggc gtgggtgctg gaggcgacgg tgctgcgcgc
     5941 cggcgcagcc cggccgttgc cgcgcgcgtt ccggttcggc gcgctggtgc tgcccagcgc
     6001 ggtcgtgttc
//
LOCUS       DATIQC010000216         2373 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_474049, whole genome shotgun sequence.
ACCESSION   DATIQC010000216 DATIQC010000000
VERSION     DATIQC010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474049"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..909)
                     /locus_tag="VLM17_04560"
     CDS             complement(<1..909)
                     /locus_tag="VLM17_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR64861.1"
                     /translation="MQYIYTMNGVSKTVPPKRQIIKDISLSFFPGAKIGLLGLNGAGK
                     STVLKIMAGVDHDFSGEARPQPGIKVGYLAQEPELDPNKTVREAVEEGVGEVLNAQAA
                     LDAIYAAYAEPDADFDKLAAEQQRLEAILAAGDAHTLENQLEVAADALRLPPWDAVIG
                     KLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARFPGTVVAVTHDR
                     YFLDNAAEWILELDRGRGIPWKGNYTDWLVQKDERLKQEESSEKARQKAIQKELEWAR
                     QNAKGGRSKGKARLARIEELQSVDYQK"
     gene            complement(1023..2072)
                     /locus_tag="VLM17_04565"
     CDS             complement(1023..2072)
                     /locus_tag="VLM17_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HSR64862.1"
                     /translation="MSSPTFVPAARPSAPTRDDGGPVASRLPGLAVAVALALLAWLAG
                     RALPLLGGAVCGVLLGVLARARWTPAPRHLPGLALAGRALLQASVVLLGFGLDLGAVA
                     RTGLHALPVTLATLAVAFATAWWLGRALRIPARLGLLVGIGTAICGGSAIAAAAPIVR
                     PDEHETAFAISTIFLFNIVAVLLFPLLGHALHLSDAGFGTWAGTAINDTSSVVAAGYA
                     YSRNAGDIATVVKLTRATLIVPVCMALAMWAAWRQRRAGARVDLRRIVPWFVLWFLVA
                     AGLRGAGLVPAAVLPWLHEVAVFLMVVALTAVGLSADLRRMAATGARPLLLGLGVWAA
                     VAASSLLVQAALAQL"
     gene            2144..>2373
                     /locus_tag="VLM17_04570"
     CDS             2144..>2373
                     /locus_tag="VLM17_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007511601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSR64863.1"
                     /translation="MLNVSPRQLEVFVQAAATGSLSAAAARVHLTQPAASMALAEMER
                     LLGAKVFDRTRGRLRLNPRGRELLPLAQELLGR"
BASE COUNT          339 a          839 c          883 g          312 t
ORIGIN      
        1 cttctggtag tcgaccgact gcagctcctc gatgcgcgcc aggcgcgcct tgcccttgga
       61 ccgtccgccc ttggcgttct gccgcgccca ctcgagttcc ttctggatcg ccttctggcg
      121 cgccttttcc gacgattcct cctgcttcag gcgctcgtcc ttctgcacca gccagtcggt
      181 gtagttgccc ttccacggga tgccgcggcc gcggtcgagt tcgaggatcc actcggcggc
      241 gttgtcgagg aagtagcggt cgtgggtcac cgcgacgacg gtgccgggga agcgggcgag
      301 gaactgttcc agccactcga ccgattcggc gtcgaggtgg ttggtcggct cgtcgagcag
      361 cagcatgtcc ggcttctgca gcagcaggcg gcacagcgcg acgcggcgct tctcgccgcc
      421 ggagagcttg ccgatcacgg cgtcccacgg cggcaggcgc agcgcgtcgg cggcgacttc
      481 gagctggttc tccagcgtgt gcgcatcgcc cgcggcgagg atcgcctcca ggcgctgctg
      541 ctcggcggcg agcttgtcga agtcggcatc gggctcggcg taggcggcgt agatcgcatc
      601 gagcgccgcc tgcgcgttga gcacctcgcc cacgccttcc tcgacggcct cgcgcacggt
      661 cttgttcggg tcgagttccg gctcctgcgc gaggtagccg accttgatgc cgggctgcgg
      721 gcgggcctcg ccggagaagt cgtggtcgac gccggccatg atcttcagca ccgtcgactt
      781 gcccgcgccg ttgaggccga gcaggccgat cttcgcgccg gggaagaacg acagcgagat
      841 gtccttgatg atctggcgct tcggcgggac cgtcttggac acgccgttca tggtgtagat
      901 gtactgcatc ggttctccgc gggcagacgg cggcgacctg cgcggggcag ggccggaaaa
      961 gatttcggga tgcgcggatt atagcggctg gcggccgccg gcccttgccg gcggccgccc
     1021 gctcacagct gggcgagcgc ggcctgcacc agcaggctgc tggccgcgac cgcggcccag
     1081 acgcccagcc ccagcagcag cgggcgcgcg ccggtcgcgg ccatgcggcg aaggtccgcg
     1141 gagaggccga ccgcggtcag cgcgaccacc atcaggaaca cggcgacctc gtgcagccac
     1201 ggcaacacgg cggcgggcac cagtcccgcg ccgcgcaggc cggcggcaac caggaaccac
     1261 agcacgaacc acggcacgat ccggcgcagg tcgacccggg ccccggcgcg acgctgccgc
     1321 cacgccgccc acatggccag cgccatgcac accggcacga tgagcgtggc ccgggtcagc
     1381 ttgaccaccg tggcgatgtc gccggcgttc cggctgtagg cgtagccggc ggcgaccacc
     1441 gaggaggtgt cgttgatcgc ggtgccggcc caggtaccga agccggcgtc gctcaggtgc
     1501 agtgcatgcc cgagcagcgg gaacagcagc accgcgacga tgttgaacag gaagatggtg
     1561 gagatcgcga acgcggtctc gtgttcgtcc gggcgcacga tcggcgccgc cgcggcgatg
     1621 gccgaaccgc cgcagatcgc ggtaccgata ccgaccagca ggcccagccg cgccgggatg
     1681 cgcagcgcgc ggccgagcca ccaggcggtc gcgaacgcca ccgccagcgt cgccagcgtc
     1741 accggcagcg cgtgcaggcc ggtgcgcgcg accgcgccga ggtcgaggcc gaacccgagc
     1801 aggaccaccg aggcctgcag cagcgcgcgg ccggcgaggg cgaggccggg gaggtggcgc
     1861 ggcgccggcg tccagcgcgc ccgcgcgagc acgccgagca ggaccccgca caccgcgccg
     1921 ccgagcagcg gcagcgcgcg cccggccagc caggccagca gggcgagggc gacggcgacg
     1981 gccaggccgg gcaggcgcga ggccaccggc ccgccgtcgt cgcgggtcgg ggcgctcggg
     2041 cgggcggcgg ggacgaaggt cggcgacgac atggggggca gtctgcgcgc cgggttcaat
     2101 caggaaaact tcggattatt gatccatgcg ataagctggt ttgatgttga acgtcagtcc
     2161 gcgccagctc gaggtgttcg tgcaggccgc cgcgaccggc agcctcagcg ccgccgccgc
     2221 gcgcgtgcac ctgacccagc cggcggcgtc gatggcgctg gcggaaatgg agcgcctgct
     2281 cggcgcgaag gtcttcgacc gcacccgcgg ccgcctgcgg ctcaacccgc gcggccgcga
     2341 gctgctgccg ctggcgcagg agctgctggg acg
//
LOCUS       DATIQC010000217        10441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_402895, whole genome shotgun sequence.
ACCESSION   DATIQC010000217 DATIQC010000000
VERSION     DATIQC010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 10441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10441
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402895"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1061
                     /locus_tag="VLM17_04575"
     CDS             <1..1061
                     /locus_tag="VLM17_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64864.1"
                     /translation="AWFGEQVCGLPRLLGVPDGVGGLVLNIHVDSNSSLQPLQALRGQ
                     GQLFTQGPYSVHFTAGPDTYRSGDDTGLDLDHNPVSRQWVRYFDQRGDAIGSHGGWIH
                     NEFAQRITDTNGGAYADWIARNDAALERITGKPVREYSSPEGHHPQWITDWLQAHGFL
                     GYYFTGDTGMAPTRSYRDGRRSDRATWAFPLVPYGSVASFEEAAEAGIGDAEMGRWLV
                     SLAGFAATDRSVRLFYFHPPGVIDYEGALDRMLEAVRARGNAFRWYTISGHAAFLDRR
                     ERTQWRITAVDGGWRLDAENRQGLADLTWHIPAHAYAGVQARKGDVLVAPVEDGWLLR
                     VRGGEAASVFLPAGRALR"
     gene            complement(1054..2364)
                     /gene="argH"
                     /locus_tag="VLM17_04580"
     CDS             complement(1054..2364)
                     /gene="argH"
                     /locus_tag="VLM17_04580"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017116208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HSR64865.1"
                     /translation="MADLLWQKPGVEVDARIQSFLAGDDVLLDREFFLHDIAASRAHA
                     QGLQRIGLLDASELAGIERELDALASDFRNGAFVLDERYEDGHSAIEARLTERLGDAG
                     RRIHAGRSRNDQVLVATRLWLKERLAQLQSLLVESAGIALQRARAEATLPMPGYTHLQ
                     RAVVSSAGMWWAGWAEAFLDDAERAARTRDWIDANPLGTAAGYGVNLPLDRAHTTRAL
                     GFARLQVSPLYAQLSRGKFELASLEALGTAVLDLRRLAWDLSLFASAEFGFVALPPQY
                     TTGSSIMPNKRNPDVVELLRASYASVAAAKAEVEQLLSLPSGYHRDLQVSKGALVHGF
                     GRGLGALALLPDLLRALGWNQERMRGALDASMYATDLAVELAADGMPFRDAYRAAADP
                     ARWADRVPEDSLAARTSPGAAVDMQLDVLRARLDRLGRAGNAAT"
     gene            complement(2357..3337)
                     /gene="argC"
                     /locus_tag="VLM17_04585"
     CDS             complement(2357..3337)
                     /gene="argC"
                     /locus_tag="VLM17_04585"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003475279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HSR64866.1"
                     /translation="MSAKPFTVGIVGARGFVGAELIRLLAGHPGFELAYVSSRELAGQ
                     RVARHIDAYAGELCYSAPSLADLPALGADAVVLALPNGKAAACVAAFDAAGGAGGRDP
                     VIIDLSADHRFDDAWHYGLPELARDPGASHRRIANPGCYASAMQFAIAPMCDVLEGPV
                     QCFGVSGYSGAGTAPSDKNDPGKLRDNLMPYALTGHVHEREVARRLGCGIEFMPHVAP
                     HFRGLTVTANLHLARAFDRDGVVARYRGYYADEPLVRVLDEAPWVSRIAGRHHAEVGG
                     FALSADGRRLVVVATLDNLLKGAATQALQNLNRAFGFDELLGIPTEPADG"
     gene            complement(3334..3945)
                     /locus_tag="VLM17_04590"
     CDS             complement(3334..3945)
                     /locus_tag="VLM17_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR64867.1"
                     /translation="MDTRPVDPWRAPPLLRGRHVTLEPLQAAHADGLRAAVQDGRLWE
                     LTYTSTPRPGEMDAYIASALEQQVAGACLAFAVRDAAGELVGTTRYYDLAPSVPRLQV
                     GYTWYARRVQRTGLNTEAKLLLLTHAFEALGCASVGLQTSHQNLASRNAIARIGAKQE
                     GILRRHLRHKDGSLRDTVCFAIVDSEWPEAKANLRAMLARHDA"
     gene            complement(3949..5268)
                     /locus_tag="VLM17_04595"
     CDS             complement(3949..5268)
                     /locus_tag="VLM17_04595"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HSR64868.1"
                     /translation="MTAHDLQTRQTIVRLLSSMSGAKEIAQYLKRFSQLDAARFALVK
                     VGGAVLRDDLDALVSSLAFLQDVGLTPIVLHGAGPQLDEELQAAGIEKRTVNGLRVTS
                     PEALAVVRRVFHAQNLRLVEALQAQDTRATSIVSGVFEAACIDPAVYGLVGEVRGVHL
                     APVEAALRAGSIPVIASLGETAGGQILNVNADYAANELVRALQPYKIVFLTGTGGLLD
                     GGGRVIDSINLSTEYEALLAQPWLHGGMRLKLEQVKQLLDRLPLSSSVSITRPAELAR
                     ELFTHTGSGTLVRRGERVLHAASWDELDLPRLRTLIESAFGRRLLPDYFERTRLLRAY
                     VSEHYRAAVILTEEEGLAYLDKFAVLDEAQGEGLGRAVWQVMRAETPRLFWRSRRGNP
                     VNAFYFAESDGCLKQPRWKVFWYGLDGYETIARCVAHCDARIPTLAD"
     gene            complement(5265..6356)
                     /locus_tag="VLM17_04600"
     CDS             complement(5265..6356)
                     /locus_tag="VLM17_04600"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014037859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HSR64869.1"
                     /translation="MLDQILPHLEALVAFDTRNPPRAIGTGGIFDYLRAGLPDFACTL
                     TDHGDGAVSLLAVRGTPRRLFNVHLDTVPSSPEWSADPLRLRVQDDRAIGLGACDIKG
                     AAAGLLAAAQCTPGDAAFLFTTDEEANDARCIAAFLGEARPFDEAVVAEPTRCEAVLA
                     HRGISSVLLRFQGAAGHASDAHALEASALHRAMRWGTRALDAAAAQQHQRFGGLTGLR
                     FNIGRVEGGIKANMVAPSAEVRFGFRPLPSQDIDELHARFGACAESGDLERYQETFRG
                     PPLPAGDTADAESRRLAARDLADALQVPIGNAVDFWTEASLFSRAGMTALVYGPGDIA
                     QAHTADEWVALEQLQRYGASVARMLGGVA"
     gene            complement(6420..7613)
                     /locus_tag="VLM17_04605"
     CDS             complement(6420..7613)
                     /locus_tag="VLM17_04605"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HSR64870.1"
                     /translation="MSSNDIVLAFSGGLDTSFCVPYLQERGWKVHTVFADTGGVDAEE
                     RAYIEARAAELGVASHVTVDGGPALWDGFVKPFVWAGEAYQGQYPLLVSDRYLIVDAA
                     LARARDLGTQAIAHGCTGMGNDQVRFDLAVKSTGDWRIVAPIREIQKEHTQTRAYEQQ
                     YLEQRGFGVRSKQKAYTINENLLGVTLSGGEIDAWQAPGEGARGWCAPRAQWPASPLR
                     ATLRFEQGEAVAFDGEPMPGAKLLARLNGLFAAYGVGRGLYTGDTTIGLKGRIVFEAP
                     GLAALLAAHRALEEAVLTKQQNRFKPDVARKWVELVYEGFFHDPLKADLESFLASSQR
                     MVSGEVVLETSGGRVDAVAVRSPHLLHAKGATYAQSADWGVEEAEGFIKLFGMSSTLW
                     AEVNR"
     gene            complement(7686..8735)
                     /locus_tag="VLM17_04610"
     CDS             complement(7686..8735)
                     /locus_tag="VLM17_04610"
                     /EC_number="2.1.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_function: GO:0043857 - N-acetylornithine
                     carbamoyltransferase activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylornithine carbamoyltransferase"
                     /protein_id="HSR64871.1"
                     /translation="MNQASTQQASTRQAPVKHFLNTQDWSRPDLDALLAQAAAFKQRR
                     LGDELRGKSIALVFFNSSLRTRTSFEIGAFQLGGHAVVLQPGKDAWPIEFDVGTVMDG
                     EAEEHIAEVAKVLSRYVDLIGVRAFPKFVDWSIDRQDRVLRGFAGHATVPVINMETIT
                     HPCQELAHVMALQEHFGTTDLRGKKYVLTWTYHPKALNTAVANSALTIATRMGMDVTL
                     LCPTPEYVLDERYMDWAARNVAETGGSLQVSHDIESAYRGADIVYAKSWGALPYFGDW
                     APEKPIRDAYRHFIVDEAKMALTNDGVFSHCLPLRRNVKATDAVMDSPRCIAIEEAEN
                     RLHVQKAVMAALAGR"
     gene            complement(9049..9510)
                     /locus_tag="VLM17_04615"
     CDS             complement(9049..9510)
                     /locus_tag="VLM17_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64872.1"
                     /translation="MPKRPSLLLAGLLLCAGGASATGQETVIPIENVRMDYAQVLRVA
                     PVYQTLHATRSEQQCDPPADAPRTQPKGLSRLVGAVRNALTKDAPRDGAAPAAGANCR
                     TVQVEREFRRPIAYDVDYIYKGMKYRSRLSEDPGNRLRVRVSVTPYIAPAD"
     gene            9643..>10441
                     /locus_tag="VLM17_04620"
     CDS             9643..>10441
                     /locus_tag="VLM17_04620"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HSR64873.1"
                     /translation="MPMSLRLHNSLTRRVETFAPLDPACPTMYVCGPTVYNYVHIGNA
                     RPYVVFGVLADLLRRRYGAVRYVRNITDVDDKINNAAREQGVPIGAITERFAAAFRED
                     MARIGAVAPDVEPEVTRHIPQIVAMIERLIDAGHAYAAEGHVLFSVGSFAGYGKLSRR
                     DPEEMLAGARVEVAPYKRDPGDFVLWKPSTDDLPGWESPWGRGRPGWHIECSAMAEAH
                     LGQTIDIHAGGVDLQFPHHENELAQSESATGKDFARVWMHNGLLRMGH"
BASE COUNT         1492 a         3663 c         3776 g         1510 t
ORIGIN      
        1 tcgcctggtt cggcgagcag gtgtgcgggc tgccgcgcct gctcggcgtg ccggacggcg
       61 tcggcggact ggtgctcaac atccacgtcg actccaactc gtcgctgcag ccactgcagg
      121 cgctgcgcgg gcaggggcag ctgttcaccc agggtcccta ttcggtgcat ttcaccgccg
      181 gccccgacac ctaccgcagc ggcgacgaca ccggcctgga cctggaccac aacccggtct
      241 cgcgccagtg ggtgcgttac ttcgaccagc gcggcgacgc catcggcagc cacggcggct
      301 ggatccacaa cgagttcgcc cagcgcatca ccgacaccaa cggcggcgcg tacgccgact
      361 ggatcgcgcg caacgacgcc gcgctcgagc gcatcaccgg caagccggtg cgcgagtact
      421 cctcgcccga aggccaccac ccgcagtgga tcaccgactg gctgcaggcg cacgggttcc
      481 tcggctacta cttcaccggc gacaccggca tggcgccgac ccgcagctac cgcgacggtc
      541 gccgttccga ccgcgcgacc tgggcgttcc cgctggtgcc ctacggcagc gtggcctcgt
      601 tcgaggaagc cgccgaggcc ggcatcggcg acgccgagat ggggcgctgg ctggtgtcgc
      661 tggccggctt cgccgccacc gaccgcagcg tgcgcctgtt ctacttccac ccgcccggcg
      721 tcatcgacta cgaaggcgcg ctcgaccgca tgctggaggc cgtgcgcgcc cgcggcaacg
      781 cgttccgctg gtacacgatc agcggccacg cggccttcct ggaccgtcgc gagcgcacgc
      841 aatggcgcat cacggcggtg gatggaggct ggcggctcga tgcggaaaac cggcagggct
      901 tggccgacct cacctggcac atccccgcgc acgcctacgc gggcgtgcag gcacgcaagg
      961 gcgacgtgct ggtcgcgccg gtcgaggatg gctggctgct gcgcgtgcgc ggcggcgagg
     1021 cggcgagcgt gttcctgccg gcaggacgcg cgctcaggta gccgcgttgc ccgcgcgccc
     1081 cagccggtcg agccgcgccc gcagcacgtc cagctgcatg tccaccgccg cgcccggcga
     1141 cgtgcgcgcg gccaggctgt cctcgggcac gcgatcggcc cagcgcgcgg gatccgccgc
     1201 ggcgcggtag gcgtcgcgga acggcatgcc gtccgcggcc agttcgaccg cgaggtcggt
     1261 ggcgtacatc gatgcatcca gcgcgccgcg catgcgttcc tggttccacc ccagcgcgcg
     1321 caacaggtcc ggcagcagcg cgagcgcccc gagaccgcgg ccgaaaccgt gcaccagcgc
     1381 gcccttgctg acctgcaggt cgcggtggta accggacggc agcgacagca gctgctcgac
     1441 ctcggccttc gccgccgcca cgctcgcata gctcgcacgc agcagttcga cgacgtcggg
     1501 attgcgcttg ttgggcatga tcgagctgcc ggtggtgtac tgcggcggca gcgcgacgaa
     1561 gccgaattcg gcgctggcga acaggctcag gtcccaggcc agccggcgca ggtcgagcac
     1621 ggcggtgccg agcgcctcca gggaggcgag ctcgaacttg ccgcgcgaga gctgcgcgta
     1681 cagcggcgac acctgcaggc gcgcgaagcc gagcgcccgg gtggtgtgcg cgcggtcgag
     1741 cggcaggttg acgccgtagc ccgccgcggt gccgagcgga ttggcgtcga tccagtcgcg
     1801 cgtacgcgcg gcccgctcgg cgtcgtcgag gaaggcctcc gcccagcccg cccaccacat
     1861 ccccgccgac gacaccaccg cgcgctgcag gtgggtgtag cccggcatcg gcagcgtcgc
     1921 ctcggcgcgc gcgcgctgca gcgcgatgcc ggcgctctcg accagcagcg actgcagctg
     1981 cgccagccgc tccttcagcc agaggcgggt cgccaccagc acctggtcgt tgcggctgcg
     2041 gccggcgtgg atgcggcggc cggcgtcgcc gagccgctcg gtgaggcgcg cctcgatcgc
     2101 cgagtggccg tcctcgtaac gctcgtcgag cacgaacgcg ccgttgcgga agtcgctggc
     2161 gagcgcgtcg agttcgcgtt cgatgccggc gagttcgctg gcgtcgagca ggccgatgcg
     2221 ttgcagcccc tgcgcgtgcg cgcggctggc ggcgatgtcg tgcaggaaga actcgcggtc
     2281 gaggagcacg tcgtcgccgg cgaggaagga ctggatccgc gcgtcgacct cgacgccggg
     2341 tttctgccag agaaggtcag ccatcggccg gctccgtggg gatgccgagc agttcgtcga
     2401 aaccgaacgc ccggttgagg ttctgcaacg cctgcgtggc ggcgcccttg agcaggttgt
     2461 cgagcgtggc caccaccacc agccgccggc cgtcggccga cagggcgaag ccgcccacct
     2521 cggcgtggtg ccggcccgcg atgcggctca cccagggcgc ctcgtcgagc acgcgtacca
     2581 gcggttcgtc cgcatagtat ccgcggtagc gcgcgaccac cccgtcgcgg tcgaaggcgc
     2641 gcgccaggtg caggttggcg gtgaccgtca gcccgcggaa atgcggcgcg acgtgcggca
     2701 tgaactcgat cccgcagccg agccgccgcg ccacctcgcg ctcgtgcacg tggccggtga
     2761 gcgcatacgg catcaggttg tcgcgcagct tgccgggatc gttcttgtcg gatggcgcgg
     2821 tgcccgcgcc ggaataaccg gagacgccga agcactgcac cggcccttcg agcacgtcgc
     2881 acatcggcgc gatcgcgaac tgcatcgccg acgcgtagca gcccggattg gcgatgcggc
     2941 gatgcgatgc gccagggtcg cgggcgagct ccggcaatcc gtaatgccag gcatcgtcga
     3001 accgatggtc ggccgacagg tcgatgatca ccggatcgcg gcctcccgcc ccgccggcgg
     3061 catcgaacgc cgccacgcag gcggccgcct tgccgttggg cagcgccagc accacggcgt
     3121 cggcgccgag cgccggcagg tccgcgagcg acggcgcgct gtagcacagt tcgccggcat
     3181 aggcgtcgat gtgccgggcg acgcgttgcc cggccagctc gcgggaggac acgtaggcga
     3241 gctcgaagcc cggatggccg gcgagcaggc ggatcagctc cgcgcccacg aacccgcgcg
     3301 ccccgacgat gccgacggtg aacggtttcg cgctcatgcg tcgtgccggg cgagcatcgc
     3361 ccgcaggttg gccttggcct ccggccactc cgagtcgacg atcgcgaagc acacggtgtc
     3421 gcgcaggctg ccgtccttgt ggcgcaggtg cctgcgcagg atgccctcct gcttcgcgcc
     3481 gatgcgcgcg atggcgttgc gcgaggcgag gttctggtgg cttgtctgca ggccgaccga
     3541 ggcgcatccc agcgcttcga aggcgtgggt gagcagcagc agcttggcct ccgtgttgag
     3601 gcccgtgcgc tgcacgcggc gcgcgtacca ggtgtagccg acctgcaggc gcggcaccga
     3661 gggcgccagg tcgtagtaac gggtcgtgcc gaccagctcg ccggccgcgt cgcgaacggc
     3721 gaaggcgagg caggcacccg cgacctgctg ctccagcgcc gacgcgatgt aggcgtccat
     3781 ttccccgggc cgcggcgtgc tggtgtacgt gagctcccac aggcgtccgt cctgcacggc
     3841 ggcgcgcagg ccatcggcgt gcgcggcctg cagcggctcg agcgtgacgt ggcggccgcg
     3901 cagcagcggc ggggcgcgcc agggatcgac ggggcgggtg tccatgggtc agtccgcgag
     3961 ggtgggaatg cgcgcgtcgc agtgggcgac gcagcgggcg atcgtttcgt agccgtccag
     4021 cccgtaccag aagaccttcc agcgcggctg cttgaggcag ccgtcgcttt cggcgaaata
     4081 gaacgcgttg acgggattgc cccgccgcga gcgccagaac agccgcggcg tctccgcgcg
     4141 catcacctgc cacacggctc ggcccaggcc ttcgccctgc gcttcgtcga gtacggcgaa
     4201 cttgtcgagg tacgccagtc cctcctcctc cgtgaggatc accgccgcgc ggtagtgctc
     4261 gctgacgtag gcgcgcagca gccgggtgcg ctcgaagtag tcgggcagca ggcggcggcc
     4321 gaaggcggat tcgatgagcg tgcgcaggcg cggaaggtcg agctcgtccc aggaggccgc
     4381 gtgcagcacg cgctcgccgc gccgcaccag cgtgcctgac ccggtgtggg tgaacagctc
     4441 gcgcgcgagt tccgccgggc gggtgatcga gaccgacgag gacagcggca ggcggtcgag
     4501 cagctgcttg acctgttcga gcttgagccg catgccgccg tgcagccacg gctgcgccag
     4561 caacgcctcg tattcggtcg acaggttgat cgagtcgatc accctgcccc cgccatcgag
     4621 caggccgccg gtgccggtga ggaacacgat cttgtacggc tgcagggccc gcaccagttc
     4681 gttggcggcg tagtcggcgt tgacgttgag gatctgcccg ccggcggtct cgccgaggct
     4741 ggcgatcacc gggatcgaac cggcgcgcag cgcggcttcg accggcgcca ggtgcacgcc
     4801 gcgcacttcg ccgacgaggc cgtacaccgc gggatcgatg caggcggctt cgaacacgcc
     4861 ggacacgatc gaggtcgcgc gcgtgtcctg cgcctgcagc gcttccacca ggcgcaggtt
     4921 ctgcgcatgg aacacgcgcc gcaccactgc cagcgcctcc ggcgaggtga cgcgcaggcc
     4981 gttgaccgtg cgcttctcga tgccggcggc ctgcaattcc tcgtcgagct gcggcccggc
     5041 gccgtgcagc acgatcgggg tcagcccgac gtcctgcagg aaggccagcg aggacaccag
     5101 cgcatcgagg tcgtcgcgca gcaccgcgcc gccgaccttg accagcgcga agcgcgcggc
     5161 gtcaagctgc gagaagcgct tgaggtattg cgcgatctcc ttcgcgccgg acatgctgga
     5221 aagcagccgc acgatggtct ggcgcgtctg caggtcatgc gcggtcatgc cacgcctccg
     5281 agcatgcgcg cgacgctggc gccgtagcgc tgcagctgtt ccagcgccac ccattcgtcg
     5341 gccgtgtgcg cctgggcgat gtcgcccggc ccgtagacca gcgcggtcat gccggcacgc
     5401 gagaacaggg atgcctcggt ccagaagtcg accgcgttgc cgatcggcac ctgcagggca
     5461 tcggcgaggt cgcgcgcggc gagccggcgc gattcggcgt cggcggtgtc gcccgccggc
     5521 agcggcggcc cgcggaaggt ttcctggtag cgctccaggt cgccggactc cgcgcaggcg
     5581 ccgaaccggg catgcaactc gtcgatgtcc tgcgagggca acgggcggaa gccgaagcgc
     5641 acctccgcgc tcggcgcgac catgttcgcc ttgatgccgc cttcgacgcg gccgatgttg
     5701 aaccgcaggc cggtgaggcc gccgaagcgc tggtgctgct gggcggctgc cgcatcgagc
     5761 gcacgcgtgc cccagcgcat cgcgcggtgc aacgcgctgg cttccagcgc gtgcgcatcc
     5821 gacgcgtgcc ccgccgcgcc ctggaagcgc agcagcaccg agctgatgcc gcgatgcgcc
     5881 agtaccgcct cgcagcgggt cggttcggcc acgaccgcct cgtcgaacgg gcgcgcctcg
     5941 ccgaggaagg cggcgatgca gcgcgcgtcg ttggcttcct cgtcggtggt gaagaggaac
     6001 gcggcatcgc ccggcgtgca ctgcgccgcc gcgagcagcc ccgccgccgc gcccttgatg
     6061 tcgcaggcgc ccagcccgat cgcgcggtcg tcctgcacgc gcaggcgcag cggatcggcg
     6121 ctccactccg gcgaggaagg cacggtgtcc aggtgcacgt tgaacaggcg ccgcggcgtg
     6181 ccgcgcacgg ccagcagcga caccgccccg tcgccatggt cggtgagcgt gcaggcgaag
     6241 tccggcagcc ccgcgcgcag gtagtcgaag atgccgcccg tgccgatggc gcgcggcggg
     6301 ttgcgggtgt cgaaggcgac gagcgcttcg aggtgcggga ggatctggtc gagcatgatg
     6361 ggtgcctggt ggcggccgtt cgggatccgt cgatgcggtt gcagggaggc gggaaccgct
     6421 cagcggttga cctcggccca cagcgtgctg ctcatgccga acagcttgat gaagccctcg
     6481 gcctcctcca cgccccagtc cgccgactgg gcataggtcg cgcccttcgc gtgcagcagg
     6541 tggggcgagc ggacggcgac ggcatcgacg cggccgccgc tggtttccag cacgacctcg
     6601 cccgacacca tgcgctggct cgaggcgagg aacgattcca ggtcggcctt gagtgggtca
     6661 tggaagaacc cttcgtacac cagctcgacc cacttgcgcg cgacgtcggg cttgaagcgg
     6721 ttctgctgct tggtcagcac cgcttcctcc aacgctcgat gcgcggccag cagcgcggcg
     6781 aggcccggcg cctcgaacac gatgcgaccc ttgaggccga tggtggtgtc gccggtgtac
     6841 agcccgcggc ccacgccgta ggcggcgaac aggccgttga gccgcgccag cagcttcgca
     6901 cccggcatcg gctccccgtc gaaggcgacg gcctcgccct gctcgaagcg gagcgtcgcg
     6961 cgcaaggggg aggccggcca ttgcgcacgc ggcgcgcacc agccgcgcgc gccctcgccg
     7021 ggtgcctgcc acgcgtcgat ctcgccgccg gacagcgtga cgccgagcag gttctcgttg
     7081 atcgtgtagg ccttctgctt cgagcgcacg ccgaagccgc gctgctcgag gtactgctgc
     7141 tcgtaggcgc gcgtctgcgt gtgctccttc tggatctctc ggatcggcgc gacgatgcgc
     7201 cagtctccgg tggacttgac cgcgaggtcg aagcgcacct ggtcgttgcc catgccggtg
     7261 cagccatgcg cgatcgcctg ggtgcccagg tcgcgggcgc gcgcgagcgc cgcgtcgacg
     7321 atcaggtagc ggtcggacac gagcagcgga tactgcccct ggtaggcctc gcccgcccac
     7381 acgaacggct tgacgaagcc gtcccacagc gcggggccgc catcgacggt gacgtgcgag
     7441 gcgacgccga gctcggccgc gcgcgcctcg atgtatgcgc gctcctccgc gtcgacgccg
     7501 ccggtgtcgg cgaacacggt gtgcaccttc cagccgcgct cctgcaggta gggcacgcag
     7561 aagctggtgt cgaggccgcc ggagaaggcg aggacgatgt cgttgctgct cattgtgtgg
     7621 ggtccgtggg gcgggcctgg gcgcgccgaa aaatcaagga ggattgcggg gcggatcgaa
     7681 gcccgtcacc ggccggcgag cgccgccatc acggccttct gcacgtgcag gcggttttcg
     7741 gcctcttcga tggcgatgca gcgcggcgaa tccatcaccg cgtcggtggc cttgacgttg
     7801 cgtcgaagcg gcaggcagtg cgagaacacg ccgtcgttgg tcagcgccat cttggcctcg
     7861 tcgacgatga agtgccggta ggcatcgcgg atgggctttt ccggcgccca gtcgccgaag
     7921 tacggcagcg cgccccagct cttcgcgtag acgatgtcgg cgccacggta ggcgctctcg
     7981 atgtcgtggc tcacctgcag cgaaccgccg gtttcggcga cgttgcgcgc ggcccagtcc
     8041 atgtagcgct cgtcgagcac gtactccggc gtggggcaca gcagggtcac gtccatgccc
     8101 atgcgggtgg cgatggtcag cgcggagttg gcaacggcgg tattgagcgc cttgggatgg
     8161 taggtccacg tgagcacgta cttcttcccg cgcaggtcgg tggttccgaa gtgctcctgc
     8221 agcgccatca cgtgcgcgag ttcctggcag ggatgggtga tcgtttccat gttgatcacc
     8281 ggcaccgtgg cgtgcccggc gaagccgcgc agcacgcggt cctggcggtc gatcgaccag
     8341 tcgacgaatt tcgggaaggc gcgcacgccg atcaggtcga cgtagcgcga cagtaccttc
     8401 gccacttcgg cgatgtgctc ctccgcctcg ccatccatca ccgtgccgac gtcgaattcg
     8461 atcggccagg cgtccttgcc gggctgcagc acgaccgcat gcccgccgag ctggaaggca
     8521 ccgatctcga agctggtgcg cgtgcgcagc gagctgttga agaacaccag cgcgatggac
     8581 ttgccacgca gctcgtcgcc gagccggcgc tgcttgaacg ccgctgcctg cgcgagcagc
     8641 gcgtcgaggt cggggcgcga ccagtcctgg gtgttgagga agtgcttgac gggggcttgc
     8701 ctggtcgaag cctgctgggt ggaagcctgg ttcatcggaa ctccgtgcgg cgctgcttgg
     8761 gagcgctggg gctttttcgg aggccggaaa agcggaagcc cagcgcggtg gctgggcttc
     8821 gcgtggtgcg aacgacggcg cggttgccgc ctacccagcc tgctcggtag gaaacggtcg
     8881 gcgcgcgcgc gaggtcatgc ccgccgccat gcgggcggag gtgaggatct cggcgggggc
     8941 gcgggtcggg cacatcgggc gcgcatcctc gcatgcagcc atgtcgggcg caagcagggc
     9001 gacgcgctcc ggacggctgc ggcaccacgc cgcggcgcca ctccgcattc aatccgccgg
     9061 ggcgatgtag ggggtcaccg agacgcgcac ccgcagccgg ttgcccggat cctcggagag
     9121 gcgcgagcgg tatttcatgc ccttgtagat gtaatccacg tcgtacgcga tcggacggcg
     9181 gaactcgcgt tccacctgca cggtgcggca attggcaccc gcggccggag ccgccccgtc
     9241 gcgcggcgcg tccttggtga gcgcgttgcg caccgcgccg accaggcgcg agagtccctt
     9301 gggctgcgtc ctcggggcgt ccgcgggcgg gtcgcactgc tgttcgctgc gggtggcatg
     9361 cagcgtctgg tagaccggtg cgacgcgcag gacctgcgca tagtccatgc gcacgttctc
     9421 gatcggaatc accgtttcct gcccggtggc cgaagcaccg cccgcgcaca gcagcaggcc
     9481 agccagcagg agggagggac gcttcggcac gggcaaggtg gttccggcgg gcctgcagtg
     9541 tatgcgctcc cctgccccga gggctgaatc cctgctgtcg tcgcctgccc gcgaccgcta
     9601 gaatccagcg gttttccgcc gaaagtccct cgcccagggc gcctgccgat gagcctccgc
     9661 ctgcacaaca gcctgacccg ccgggtcgaa acgttcgcgc cgctcgaccc ggcctgcccg
     9721 acgatgtacg tctgcgggcc gacggtctac aactacgtgc acatcggcaa cgcgcgcccc
     9781 tacgtcgtct tcggcgtgct tgccgacctg ctccgccggc gctacggcgc ggtgcgctac
     9841 gtgcgcaaca tcaccgacgt cgacgacaag atcaacaacg ccgcgcgcga gcagggcgtg
     9901 ccgatcggcg cgatcaccga gcgcttcgcg gcggcgttcc gcgaggacat ggcgcggatc
     9961 ggcgcggtcg cccccgacgt cgagccggaa gtcacgcgcc acatcccgca gatcgtggcg
    10021 atgatcgagc gcctgatcga cgcgggccat gcctatgccg ccgaaggcca cgtgctgttt
    10081 tccgtcggct ccttcgccgg atacggaaag ctgtcgcgcc gggaccccga ggagatgctt
    10141 gccggcgcgc gggtcgaggt cgcgccgtac aagcgcgatc ccggcgactt cgtgctgtgg
    10201 aagccttcga ccgacgacct gcccggctgg gagtcgccgt gggggcgcgg gcggccgggc
    10261 tggcacatcg agtgctcggc gatggccgag gcgcacctgg gccagacgat cgacatccac
    10321 gccggcggcg tcgacctgca gttcccgcac cacgagaacg agctggccca gagcgagtcg
    10381 gccaccggca aggacttcgc ccgcgtctgg atgcacaacg gcctgctccg catgggccac
    10441 a
//
LOCUS       DATIQC010000218         3241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_14573, whole genome shotgun sequence.
ACCESSION   DATIQC010000218 DATIQC010000000
VERSION     DATIQC010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3241
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14573"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1752
                     /locus_tag="VLM17_04625"
     CDS             <1..1752
                     /locus_tag="VLM17_04625"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR64874.1"
                     /translation="APAAIGVELQGVADAPAAGMAEGATALAGSGDEPPYRVLVVEDD
                     PSQALFAEQVLGGAGIEVAVVAAPPELLPTLERFHADLVLMDLHMPGMSGIELTALIR
                     AQPQFAPLPVVFLTGDPDPEKQFEVLECGADDFLSKPIRPRHLIAAVQSRIKRARALS
                     RQRFAAEARNPVTGLHTRTFALQRIAATLANGSPGGALFIEIQAATALSERYGYAGYE
                     QLMHEVGLRAIALAAPRPCARLNDNAFLVVAPEADDAALEALARRLRDGIGSGSFDID
                     SLPQRLRVAVGYTTLADAHGFADAGAVLDAVEQAARSAREAPIGLAAHVSDAPRDDRG
                     LAERLRGALRNGAFELQYQPVVAVAGGEEAQFQVLLRLREADGRLRSAGEIVPAAEAA
                     GLMPELDRWVLEQAIPLLQRRRADGKPVRLFVSQSPHALARDMHAGWLQEMLASHAVD
                     GPSLVIDLRLDDALVHSVILRQFADQLMPAGVQFCLSQFGPGADAERLLQQLPLGYVR
                     LSGRYARAHADAALRDELRGIIDRSHRHGLQVIGPQVEDPQGAATLWMSGIDYIQGNL
                     VQQAVGGLDFDFQHSVL"
     gene            1752..>3241
                     /locus_tag="VLM17_04630"
     CDS             1752..>3241
                     /locus_tag="VLM17_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64875.1"
                     /translation="MHDNDALPTPTPIARWLALGGAGGATLALLLAHLGLSGPWPTVA
                     LVLALLAVFAITAFLFSARRSELFLRRTAEQSRRREEAIGELQRELDRHTQLEQQLRQ
                     AKQAAESAVMAKGEFLATMSHEIRTPLNGIVPMLDLLLHAPTLAPDHRELVRTAYASS
                     QQLLRIVDDILDYSKLEADRLELETTAFNLRELLEMVIQLMERPADAKGLRLHLHIDP
                     AVRLPVRGDPVRLRQVLGNPLSNAVKFTERGTVTVNVRRVGETQAQHQLRFEVRDTGI
                     GIPSDAQARLFQAFSQADASTTRLYGGTGLGLAICRRIVDLMGGDIGVTSEPGRGATF
                     WFEVPLLKVPGDMQVQELNFHGGRLLLLSADQKLRMRLSMLLPNWGLRVTPVETTQEA
                     LERLRTAATQGPPWAYSLVLADLAGMRTTALALHRNLERQAIYGDVRLVCLQGDDPAP
                     EELQRTATILGRQVPDADLRAALVSPAPARPAAPGQAVPGPERAPPT"
BASE COUNT          437 a         1233 c         1137 g          434 t
ORIGIN      
        1 gcgccggccg cgatcggggt cgaactgcag ggggtcgccg acgccccggc cgccggcatg
       61 gccgaagggg ccaccgcgct cgccggcagc ggcgacgagc cgccgtatcg ggtgctggtg
      121 gtcgaggacg atccgagcca ggcgctgttc gccgaacagg tgctcggggg cgccgggatc
      181 gaggtcgcgg tggtggccgc gccgccggag ctgctgccga cgctggagcg cttccatgcc
      241 gacctcgtgc tcatggacct gcacatgccc ggcatgagcg gcatcgagct gaccgcgctg
      301 atccgcgcgc agccgcagtt cgcgccgctg ccggtggtct tcctcaccgg cgatccggat
      361 ccggagaagc agttcgaagt gctcgaatgc ggcgccgacg acttcctcag caagccgatc
      421 cgcccgcgcc acctgatcgc cgccgtgcag agccggatca agcgcgcgcg tgcgctgagc
      481 cgccagcgct tcgccgccga ggcgcgcaac ccggtgaccg gcctgcacac gcgcacgttc
      541 gccctgcagc ggatcgccgc gacgctcgcc aacggcagcc cgggcggcgc gctgttcatc
      601 gagatccagg ccgcgaccgc cctcagcgag cgctacggct acgccggcta cgagcaactg
      661 atgcacgagg tcggcctgcg agcgatcgcg ctcgccgcgc cgcggccgtg cgcgcggctg
      721 aacgacaacg ccttcctggt cgtcgcgccc gaagccgacg acgcggcgct ggaagcgctc
      781 gcccggcgcc tgcgcgacgg catcggctcg ggatccttcg acatcgactc cctgccgcaa
      841 cggctgcggg tcgcggtcgg ctacaccacg ctggcggacg cgcacggctt cgccgacgcg
      901 ggcgcggtgc tcgatgcggt ggaacaggcg gcgcgcagcg cgcgcgaggc gccgatcggc
      961 ctggccgcgc acgtcagcga tgccccgcgc gacgaccgcg gccttgccga gcggctgcgt
     1021 ggtgcgctgc gcaacggcgc gttcgagctg cagtaccagc cggtggtcgc ggtggcgggc
     1081 ggcgaggagg cgcagttcca ggtcctcctg cgcctgcgcg aggcggacgg gcggctgcgc
     1141 agcgccggcg agatcgtgcc ggccgcggag gccgcggggc tgatgcccga gctcgaccgc
     1201 tgggtgctgg agcaggccat cccgctgctg cagcgccgcc gcgccgacgg caagccggtc
     1261 cgcctgttcg tctcgcagtc gccgcatgcg ctggcgcgcg acatgcatgc gggatggctg
     1321 caggaaatgc tcgccagcca tgccgtcgac ggcccctcgc tggtcatcga cctgcgcctg
     1381 gacgacgcgc tggtgcattc ggtgatcctg cgccagttcg ccgaccagct gatgccggcg
     1441 ggcgtgcagt tctgcctgag ccagttcggc ccgggcgccg atgccgagcg cctgctgcag
     1501 caactcccgc tcggctacgt ccgcctgtcg ggccgctatg cgcgcgcgca cgccgatgcc
     1561 gcattgcggg acgaattgcg tggcatcatc gaccggtccc accgccacgg gctgcaggtg
     1621 atcggcccgc aggtggagga tccgcagggg gcggccacgc tgtggatgag cggcatcgac
     1681 tacatccagg gcaacctggt gcagcaggcc gtcggcgggc tcgatttcga tttccagcat
     1741 tcggtgctct gatgcacgac aacgacgcgc tgcccacgcc cacgccgatc gcgcgctggc
     1801 tcgccctggg cggcgcgggt ggcgccacgc tcgcactgct gctcgcccac ctcggcctgt
     1861 ccgggccgtg gccgacggtg gcgctggtgc tggcgctgct ggcggtgttc gcgatcaccg
     1921 cgttcctgtt ctccgcgcgc cgcagcgaac tcttcctgcg ccgtaccgcc gagcagtcgc
     1981 gccggcgcga ggaggcgatc ggcgaactgc agcgcgagct cgatcgccac acccagctcg
     2041 agcagcagct gcgccaggcc aagcaggcgg ccgaatcggc ggtgatggcc aagggcgagt
     2101 tcctcgccac catgagccac gagatccgca ccccgctcaa cggcatcgtg ccgatgctcg
     2161 acctgctgct gcacgcgccc accctcgcgc ccgaccaccg cgaactggtg cgcacggcct
     2221 acgcctcgtc gcagcagctg ctccgcatcg tcgacgacat cctcgactac tccaagctcg
     2281 aggccgaccg cctcgagctc gagaccaccg cgttcaacct gcgcgaactg ctggaaatgg
     2341 tgatccagct gatggagcgc ccggccgacg cgaagggcct gcgcctgcac ctgcacatcg
     2401 accctgccgt tcgcctgccg gtgcgcggcg acccggtgcg cctgcgccag gtgctcggca
     2461 acccgctcag caacgcggtc aagttcaccg aacgcggcac cgtcaccgtc aacgtgcgcc
     2521 gggtcggcga gacccaggcg cagcaccagc tgcgcttcga ggtccgcgac accggcatcg
     2581 gcatcccgtc cgacgcgcag gcgcggctgt tccaggcctt cagccaggcc gacgcctcca
     2641 ccacccgcct gtacggcggc accgggctgg ggctcgcgat ctgccggcgc atcgtcgacc
     2701 tgatgggcgg cgacatcggc gtcacctccg agcccgggcg cggtgcgacg ttctggttcg
     2761 aagtgccgct gctcaaggtg ccgggcgaca tgcaggtgca ggaactcaat ttccacggcg
     2821 gccgcctgct gctcctcagc gccgaccaga agctgcgcat gcgcctgtcg atgctgctgc
     2881 cgaactgggg cctgcgcgtg accccggtcg agaccacgca ggaagccctc gaacgcctgc
     2941 gcacggcggc gacgcagggc ccgccgtggg cgtattcgct ggtgctggcc gacctcgccg
     3001 gcatgcgcac caccgcgctc gcgctgcacc gcaacctcga acgccaggcg atctacggcg
     3061 acgtgcggct ggtctgcctg cagggcgacg atccggcgcc cgaggaactg cagcgcacgg
     3121 ccaccatcct cggccgccag gtgcccgacg ccgacctgcg cgccgccctg gtcagccccg
     3181 cccccgcccg cccggccgcg cccgggcagg ctgtccccgg cccggagcgc gccccgccca
     3241 c
//
LOCUS       DATIQC010000219         3352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_438418, whole genome shotgun sequence.
ACCESSION   DATIQC010000219 DATIQC010000000
VERSION     DATIQC010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438418"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1712)
                     /locus_tag="VLM17_04635"
     CDS             complement(<1..1712)
                     /locus_tag="VLM17_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018973309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR64876.1"
                     /translation="MRRVLGICIGLLLATPVLGAPALRYVALVDGGKNAGHQFVTTNP
                     DGSVAVDYIFKDNGRGPELKETYTLGADGTFASYHVQGRTTFGAPVDESFSRAGDRGQ
                     WKSTSDHGDAPLPAGAMYVPLGGTPNAFSVAIGALAKRADGKLPLVPSGTLTMRKVDE
                     AEVGQGRQKRKVQLLAITGVGFTPNFVWATTGAAPRLFAFIAPGFVQLVEEGWEKDAD
                     ALEARQKKDEAKALVDLQQRLRHPLPGSTLVRNARVFDSERAALGAASDVLLRDGRIA
                     AITPTGSVPMQADHVIDAGGRVLAPGLFDMHAHYGAWDGGLHLATGITTIRDMGNDNA
                     TLQGLIADEKAGHLLAPHIVPAGFIEGESPMSARNGFVVKNMEDVKHAIDWYAAHGYP
                     QIKIYNSFPKDLVRETTAYAHSKGLRVSGHIPAFMRAQQAVEQGYDEIQHINQVLLNF
                     YVDDKTDTRTLTRFYLPAQKTADLDFDSKPVQDYIRMLADRHIVIDSTLTTFDFLRQR
                     AGELSQAYAAAADHMPPDVQRGLRVAEMDIPDDATAALYEKSYEKMIDFVGRMYRAGV
                     PLVAG"
     gene            complement(1815..2234)
                     /locus_tag="VLM17_04640"
     CDS             complement(1815..2234)
                     /locus_tag="VLM17_04640"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HSR64877.1"
                     /translation="MDIRSVMTANPACCGREATLQEVAQLMKRNDCGQIPVVDDGNKP
                     VGVITDRDIAVRAVAEGTDTRNATAADYMSAPVATVRDNSSIDDCYRLMEQNQIRRVV
                     VVDNQGNVAGIVAQADIALSGRDAKTAEVVKQVSTPG"
     gene            2407..>3352
                     /locus_tag="VLM17_04645"
     CDS             2407..>3352
                     /locus_tag="VLM17_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidyl carboxypeptidase II"
                     /protein_id="HSR64878.1"
                     /translation="MKHPLALALALALAAAPVAFAQPHAKSHAVHAQTQPNAANPFFQ
                     DSPLPLHYPQFDRIKDSDFAPAFDRGMAEQLKEIQAIANNPQKATFDNTIVAMEKSGR
                     TLTRAGTVFGNLVGADTNPVRDKLDAEYSPKFAAHRDAIYLNPKLFARVQALYDQRAS
                     LGLDAEGVRLVEKYYQDFVRAGAKLSDADKAKLKQVNAELASLGTQFSQNVLAERNDL
                     AVVVDTRDELKGLSDEAIAAAQKAAKDHKLEGKYVIELQNTTIQPPLTYLENRALRER
                     IFKASVSRGARGNQWDNTGIVSKVAKLRAEKARMLGYPT"
BASE COUNT          501 a         1182 c         1129 g          540 t
ORIGIN      
        1 cctgctacca gcggcacgcc ggcccggtac atgcgaccga cgaaatcgat catcttttcg
       61 taggacttct cgtagagcgc cgcagtggcg tcgtcgggaa tgtccatctc cgccacgcgc
      121 agcccgcgct gcacgtcggg cggcatgtgg tcggcggccg cggcgtaggc ctgcgacagt
      181 tcgccggcgc gctggcgcag gaagtcgaag gtggtcagcg tcgagtcgat cacgatgtgg
      241 cggtcggcca gcatccggat gtagtcctgc accggcttgc tgtcgaagtc caggtccgcg
      301 gtcttctgcg ccggcaggta gaagcgagtc agcgtgcggg tgtcggtctt gtcgtcgaca
      361 tagaagttca gcagcacctg gttgatgtgc tggatctcgt cgtagccctg ctccaccgcc
      421 tgctgcgcgc gcatgaaggc aggaatgtgg ccgctcacgc gcagcccctt gctgtgtgcg
      481 taggccgtcg tctcgcggac caggtccttc gggaaggagt tgtagatctt gatctgcggg
      541 tagccgtgcg cggcgtacca gtcgatggcg tgcttcacgt cctccatgtt cttgacgacg
      601 aaaccgttgc gcgccgacat cgggctctcg ccctcgatga agccggccgg cacgatgtgc
      661 ggcgcgagca ggtggccggc tttctcgtcg gcgatcaatc cctgcagcgt cgcgttgtcg
      721 ttgcccatgt cgcggatggt ggtgatgccg gtggccaggt gcaggccgcc gtcccacgcg
      781 ccgtaatggg cgtgcatgtc gaacaggccg ggggcgagga ctcgcccgcc cgcgtcgatc
      841 acgtggtcgg cctgcatcgg cacgctgccc gtgggcgtga tcgcggcgat gcggccgtcg
      901 cggagcagca cgtcgctggc cgccccgagc gcggcgcgct cgctgtcgaa cacgcgcgca
      961 ttgcgcacca gcgtgctgcc gggcaacgga tggcgcagcc gctgctgcag gtccaccagt
     1021 gccttcgcct cgtccttctt ctgccgcgct tcgagggcgt cggcgtcctt ctcccagcct
     1081 tcctcgacca gctgcacgaa gccgggcgcg atgaaggcga acaggcgcgg cgcggcgccc
     1141 gtggtggccc agacgaaatt cggggtgaag ccgacgccgg tgatcgccag cagctgcacc
     1201 ttccgcttct gcctgccctg ccctacttcg gcctcgtcga ccttgcgcat ggtcagcgtg
     1261 ccgctcggca ccagcgggag cttgccgtcg gcgcgtttcg cgagcgcacc gatggccacg
     1321 gagaacgcgt tcggggttcc gcccagcggc acgtacatcg caccggccgg cagtggcgcg
     1381 tcgccgtggt cggacgtcga cttccactgg cccctgtcgc cggcgcgcga gaacgattcg
     1441 tcgaccgggg caccgaacgt cgtccggccc tgcacgtggt agctcgcgaa ggtgccgtcc
     1501 gccccgagcg tgtaggtctc tttcagctcg ggaccgcgac cgttgtcctt gaagatgtag
     1561 tcgaccgcga cgctgccatc ggggttggtc gtgacgaact ggtgcccggc gttcttgccc
     1621 ccgtcgacca gcgccacgta gcgcagcgca ggcgcgccca ggacgggcgt cgccagcagc
     1681 aatccgatgc agatccccag cacacgacgc atggccacgc tccccggatg aagtgaccgg
     1741 agtcaagcac gcacgggcgt cgccgcacaa gcgccggtcg tgcggtgccg gcgcctgcga
     1801 ccgcttggcg gcgctcagcc cggcgtcgac acctgcttga ccacctcggc ggtcttggcg
     1861 tcgcggccgg acagggcgat gtcggcctgg gcgacgatgc cggcgacgtt cccctggttg
     1921 tcgaccacca ccacgcggcg gatctggttc tgctccatca gccgatagca gtcgtcgatg
     1981 ctgctgttgt cgcgcacggt ggcgaccggc gcgctcatgt agtcggcggc cgtggcgttg
     2041 cgggtgtcgg tgccctcggc gaccgcgcgc acggcgatgt cgcggtcggt gatcaccccg
     2101 accggcttgt tgccgtcgtc gaccaccggg atctgtccgc agtcgttccg tttcatcagc
     2161 tgcgccactt cctgcagcgt ggcctcgcgg ccgcagcagg cggggttggc ggtcatgacc
     2221 gagcggatgt ccatgggctc ctcctcaccg gaaagggatc gcaagcggaa cgctcacgat
     2281 gccgcaaccg cggtcgtggc agggtgaacc gtggcctcgc gccccggtcc caccgtggct
     2341 tccgtcatgg gcaggcccgt cgccggtgcg ctaggctggc ggcttccctc cgactggatg
     2401 ccccgcatga agcacccgct cgccctggcg ctggccctcg cgctggccgc tgcccccgtc
     2461 gccttcgccc aaccccacgc caagtcgcac gccgtgcacg cccagaccca gcccaacgcc
     2521 gcgaacccgt tcttccagga cagcccgctc ccgctgcatt acccgcagtt cgaccggatc
     2581 aaggacagcg acttcgcgcc cgcgttcgac cgcggcatgg cggagcagct gaaggaaatc
     2641 caggcgatcg ccaacaaccc gcagaaggcg accttcgaca acaccatcgt cgcgatggag
     2701 aagtccggcc gcacgctgac gcgcgcgggc accgtgttcg gcaacctggt cggcgcagac
     2761 accaacccgg tccgcgacaa gctcgacgcc gagtattcgc cgaagttcgc cgcgcaccgc
     2821 gacgcgatct acctcaaccc caagctgttc gcccgcgtgc aggcgctgta cgaccagcgg
     2881 gcgtcgctgg gcctggacgc cgaaggcgtg cgcctggtcg agaagtacta ccaggacttc
     2941 gtccgcgccg gcgccaagct gtcggacgca gacaaggcca agctgaagca ggtcaacgcc
     3001 gagctcgcct cgctgggcac gcagttcagc cagaacgtgc tcgccgagcg caacgacctc
     3061 gcggtcgtcg tcgacacgcg cgacgagctg aagggcctgt ccgacgaggc gatcgccgcc
     3121 gcgcagaagg cggccaagga ccacaagctc gagggcaagt acgtcatcga gctgcagaac
     3181 accaccatcc agccgccgct gacctacctc gagaaccgcg ccctgcgcga gcgcatcttc
     3241 aaggcgtcgg tttcgcgcgg cgcccgcggc aaccagtggg acaacaccgg catcgtgtcg
     3301 aaggtggcga agttgcgcgc ggagaaggcg cgcatgctcg gctacccgac ct
//
LOCUS       DATIQC010000220         2461 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_262174, whole genome shotgun sequence.
ACCESSION   DATIQC010000220 DATIQC010000000
VERSION     DATIQC010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2461
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262174"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1379
                     /locus_tag="VLM17_04650"
     CDS             <1..1379
                     /locus_tag="VLM17_04650"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HSR64879.1"
                     /translation="AVRFVPLIGEHGWQDLTARAPVARRNEDIGVVIRDAAEALPDLD
                     APDFGALFDRFGDARVVLLGEASHGTSEFYRARAAITRRLVERHGFDIVAVEADWPDA
                     ASVDRYVRHKPALAGAPPAFQRFPSWMWRNTDVQAFVEWLRGHNGGRPKAQQAGFYGL
                     DLYSLNNSIRAVLDYLDRVDPEAARVARRRYGCLTPWSKEPAAYGHMALTSGFAPCEK
                     AVIETLQALLDKHMEYVRADGESFLDAAQNARLVANAEAYYRAMYYGSAESWNLRDTH
                     MFETLCSLLDARGRHAKAVVWAHNSHIGDARHTEMGQVRGELNIGQLCRQEWGARAVP
                     IGFGTHGGTVAAASDWDAPMQVIPVNPSLPESCERQFHDSGVVPSLFDLRPGRREALC
                     ERFAASRLERYIGVVYRPDTERWSHYADSELSRQFDAWVWFDRTHAVTALADGHAQGM
                     PETYPFGV"
     gene            1461..2219
                     /gene="fnr"
                     /locus_tag="VLM17_04655"
     CDS             1461..2219
                     /gene="fnr"
                     /locus_tag="VLM17_04655"
                     /inference="COORDINATES: protein motif:HMM:NF008365.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HSR64880.1"
                     /translation="MATTHVIDLAQIRRGCAHCSLQQLCLPAGISHDELQRLDDIVRR
                     RRPVERGERLFRPGDPMSAVYVARDGAFKTVTISEEGEEQVVGFHLPGELIGLDALGA
                     GAHRCEAVALSTANVCEVPFEQLANVASQIPGLQHQLLRVIGQSVGRDQDHVGMLVRR
                     QAGERIALFLHGLSERFRNIGQSPTRFKLPMSREDIARFLGLALETVSRGFSRLQEDG
                     VIGVVGRRVEILDAAELNRLAHNAEHEEPRRSRA"
     gene            complement(2262..>2461)
                     /locus_tag="VLM17_04660"
     CDS             complement(2262..>2461)
                     /locus_tag="VLM17_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSR64881.1"
                     /translation="GTLPVMLPLTWAGARLGRRLQRGGWRLAMAGVLVGSGALTLLAP
                     WLAHAPALQGALAALGCRSLP"
BASE COUNT          358 a          935 c          860 g          308 t
ORIGIN      
        1 gcgcggtgcg cttcgtgccg ctgatcggtg agcacggctg gcaggacctg accgcgcgcg
       61 cgccggtcgc gcgtcgcaac gaggacatcg gcgtggtgat ccgcgacgcc gccgaggccc
      121 tgcccgacct cgacgcgccc gacttcgggg cgctcttcga ccggttcggc gacgcgcgcg
      181 tggtgctgct cggcgaagcc agccacggca cgtccgagtt ctaccgcgcg cgcgcggcga
      241 tcacccggcg gctggtcgaa cggcacggct tcgacatcgt cgccgtggaa gccgactggc
      301 ccgacgcggc cagcgtcgac cgctacgtgc gccacaagcc ggcgctcgcg ggcgcgccgc
      361 cggcgttcca gcggtttccg agctggatgt ggcgcaacac cgacgtccag gccttcgtcg
      421 aatggctgcg cggccacaac ggcggccggc cgaaggcgca gcaggcaggc ttctacggcc
      481 tggacctgta cagcctcaac aactcgatcc gcgcggtgct cgactacctc gaccgggtcg
      541 atcccgaagc ggccagggtg gcgcgccgcc gctacggctg cctcaccccg tggtcgaagg
      601 agcccgccgc ctacggccac atggcgctga cctccggctt cgcgccctgc gagaaggcgg
      661 tgatcgagac cctgcaggcg ctgctcgaca agcacatgga gtacgtgcgc gccgatggcg
      721 aaagcttcct cgacgccgcc cagaacgcgc gcctggtcgc gaacgccgag gcctactacc
      781 gggcgatgta ctacggctcc gccgaatcct ggaacctgcg cgacacccac atgttcgaaa
      841 cgctctgcag cctgctcgac gccaggggcc ggcacgccaa ggccgtcgtc tgggcgcaca
      901 actcgcacat cggcgacgcg cgccacaccg agatgggcca ggtgcgcggc gaactgaaca
      961 tcggccagct gtgccggcag gaatggggcg cgcgggcggt gccgatcggc ttcggcaccc
     1021 acggcggcac ggtcgccgcg gccagcgact gggacgcgcc catgcaggtg atcccggtga
     1081 atccgtcgct gccggagagc tgcgagcgcc agttccacga ttcgggcgtc gtgccgagcc
     1141 tgttcgacct gcgcccgggc cggcgcgagg cgctgtgcga gcgcttcgcg gccagccgcc
     1201 tggagcgcta catcggcgtc gtctaccgcc cggacaccga acgctggagc cattacgccg
     1261 attcggagct gtcgcgccag ttcgacgcct gggtctggtt cgaccggacc catgccgtca
     1321 ccgcgctcgc ggacggccac gcccagggca tgccggagac ctacccgttc ggcgtgtgaa
     1381 cgcccgcctg ccgggaccct ccggcccgcc gttcagtcga ggccacgccg gcggcgcgcg
     1441 caccgtggca ccatagccgc atggcgacca cccacgtcat cgacctcgcc cagatccggc
     1501 gcggctgcgc gcactgttcg ctgcagcagc tgtgcctgcc ggccggcatc agccatgacg
     1561 aactgcagcg cctggacgac atcgtccgcc ggcgccggcc ggtcgaacgc ggcgagcgcc
     1621 tgttccggcc cggcgacccg atgagcgcgg tctacgtcgc ccgcgacggc gccttcaaga
     1681 cggtgacgat cagcgaggag ggagaggagc aggtggtcgg cttccacctg cccggcgagc
     1741 tgatcggcct tgacgcgctg ggcgccggcg cgcaccgctg cgaggcggtc gcgctgtcca
     1801 ccgccaacgt gtgcgaagtg ccgttcgaac agctggccaa cgtcgccagc cagatccccg
     1861 ggctgcagca ccagctgctg cgcgtcatcg gccagagcgt cggccgcgac caggaccacg
     1921 tcggcatgct ggtgcgccgg caggcgggcg agcgcatcgc gctgttcctg cacggcctgt
     1981 ccgagcgctt ccgcaacatc ggccagtcgc cgacccggtt caagctgccg atgagccgcg
     2041 aggacatcgc gcgcttcctc ggcctcgcgc tggagacggt gagccgcggc ttctccaggc
     2101 tgcaggagga cggcgtgatc ggcgtggtcg ggcggcgggt cgagatcctc gacgccgccg
     2161 agctgaaccg cctcgcccac aacgcggagc acgaggaacc gcggcgcagc cgcgcctgac
     2221 ctgcggtccc tcccggggca ggcacgcgtc ccgcccgcga cttacggcag gctgcggcac
     2281 cccaatgccg ccagcgcgcc ctgcagggcg ggcgcatgcg ccagccacgg cgcgagcagc
     2341 gtcagcgcgc ccgaacccac cagcacgccg gccatcgcca gccgccagcc accccgctgc
     2401 aggcgccggc ccaggcgcgc gccggcccag gtcagcggca gcatcaccgg cagcgtgccc
     2461 a
//
LOCUS       DATIQC010000221         3482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_332568, whole genome shotgun sequence.
ACCESSION   DATIQC010000221 DATIQC010000000
VERSION     DATIQC010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332568"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1057
                     /locus_tag="VLM17_04665"
     CDS             <1..1057
                     /locus_tag="VLM17_04665"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HSR64882.1"
                     /translation="HYRDALRVHPGCGDAWRGLSNIKTRPLSAQDGTALRAQLARADL
                     REEDRIALGYALGKHEEDHGRHAEAFAALAQANALLRRRGPWSRPAFEGFVAAALAAT
                     GALPAPVDPALGSGVIFIVGLPRSGSTLFEQILAAHPQVEGASELPDLGDVVQGESRR
                     RGKPFPQWIVEATADDWHRLGVGYLARTARWRARRPRFTDKMPENWKLAGVLRAMLPG
                     ATVIDVRRDPLETGWSCFRQQFYQLPHFSCDLADIGVYLRGCERAMDAWRARDPARIR
                     LHRYEDLLAEPDARIRALLDDCGLPFDPRCLDFHKAARSVRTASAAQVRQPLRGDTAR
                     AAHYGALLDPLRRALAG"
     gene            1101..1589
                     /locus_tag="VLM17_04670"
     CDS             1101..1589
                     /locus_tag="VLM17_04670"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003488754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase domain-containing protein"
                     /protein_id="HSR64883.1"
                     /translation="MDQLLIVTTGGTIDKVYFDDKSDYQVGEPQIGHILEELGVAFRF
                     RVIPIMRKDSLHIEATDRELLRATIAAQDEAHVLVTHGTDTMIDTARVLASIGGKTIV
                     LTGALNPARFRGSDAEFNIGTAVGAVQSLPPGVYIAMNGRVWDPGKVRKNVAANRFEA
                     IG"
     gene            complement(1721..>3482)
                     /locus_tag="VLM17_04675"
     CDS             complement(1721..>3482)
                     /locus_tag="VLM17_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pre-peptidase C-terminal domain-containing
                     protein"
                     /protein_id="HSR64884.1"
                     /translation="NGLGNRNAERESSREVVFVDDDGHARLAYEVTFFADKTGGGSPT
                     RPFVIIDANSGRVLKQWEGLTHALVGTGPGGNTKTGQYEWGSGGIYGYNDVAQSGTTC
                     TMNNTHVKSVNLNGGTTSTTAFSYTCPRNTYKTINGGYSPINDAHYFGGVITKMYPAY
                     TGYNALTFQLVMRVHYKTSYENAFWDGSTMNFGDGATTFYPLVSADVAGHEVSHGFTE
                     QHSNLTYSGMSGGMNEAFSDMGGEATEYYWKGTNDFLVGQEIFKSSGALRYMCNPPAD
                     GASIDNAANYTSGMDVHYSSGVYNKAFCNLAKTAGWNTPTAFKVFARANALYWTASST
                     FNSGACGVETAATDLGLAKADVTAAFNTVGVSCSGGGGGGTTALTNGTPVSNISGATG
                     SDKYYSLVVPAGATNLKFVTSGGSGDVDVYAKLGSNPTTTTHDCASEGSTTAETCSIA
                     APSAGTYYVLLHGYAAYSGVTLTGSYSTGGGGGTVLTSGVGVSLPSVATGSWSPDYTL
                     SVPSGKTSVVFTISGGTGDADMYVRIGATPTTTTYNCRPYLTGNSETCTFNAPTSGTY
                     HVSVRAYSAYSGVTLKGTIN"
BASE COUNT          494 a         1188 c         1222 g          578 t
ORIGIN      
        1 acattaccgc gatgcgctgc gcgtgcatcc cgggtgcggc gacgcatggc gcgggctgtc
       61 caacatcaag acgcgaccgc tgtcggcgca ggacggcacc gcgttgcgcg cgcagctggc
      121 gcgcgccgac ctccgcgagg aggaccgcat tgcgctcggc tatgcgctcg gcaagcacga
      181 ggaggaccac ggccgccacg ccgaggcctt cgcggcgctg gcgcaggcca atgccctgct
      241 gcgccggcgc ggaccatgga gccggccggc gttcgagggt ttcgtcgcgg cggcgctcgc
      301 cgccaccggg gctctgcccg ccccggtcga tccggcgctg ggcagcgggg tgatcttcat
      361 cgtcgggttg ccgcgctcgg gctcgaccct gttcgagcag atcctcgccg cgcatcccca
      421 ggtcgaaggc gccagcgagc tgcccgacct cggcgacgtc gtccagggcg aatcgcggcg
      481 gcggggcaag cccttcccgc agtggatcgt cgaggccacc gccgacgact ggcaccggct
      541 cggcgtcggc tacctcgcgc gcaccgcccg ctggcgcgcg cgcaggccgc gcttcaccga
      601 caagatgccg gagaactgga agctggccgg cgtgttgcgc gcgatgctcc cgggcgccac
      661 cgtcatcgac gtgcgccgcg acccgctgga aaccggctgg tcgtgcttcc gccagcagtt
      721 ctaccagctg ccgcattttt cctgcgacct ggccgacatc ggggtgtacc tgcgcggctg
      781 cgagcgcgcg atggacgcgt ggcgagcgcg tgaccccgcc cgcatccggc tgcaccgcta
      841 cgaggacctg ctggccgaac cggacgcgcg catccgcgcc ctgctggacg attgcgggct
      901 gcccttcgac ccacgttgcc tcgatttcca caaggccgcg cgtagcgtgc gtaccgccag
      961 cgccgcccag gtgcgccagc ccctgcgcgg cgacaccgca cgcgccgcgc actacggcgc
     1021 gctgctcgac ccgctgcggc gggccctggc cggttgagcc ccgcgcgcct tccggttcgt
     1081 tttggcggac aatgcgcgcc atggaccaac tgctcatcgt cactaccggc ggcaccatcg
     1141 acaaggtgta tttcgacgac aagtcggact accaggtcgg cgagccgcag atcggccaca
     1201 tcctcgagga actcggcgtc gccttccgct tccgggtgat ccccatcatg cgcaaggact
     1261 cgctgcacat cgaggccacc gaccgcgagc tgctgcgcgc gaccatcgcc gcgcaggacg
     1321 aggcgcacgt gctggtcacc cacggcaccg acaccatgat cgacaccgcg cgcgtgctgg
     1381 ccagcatcgg cggcaagacc atcgtgctga ccggcgcgct gaatccggcg cgcttccgcg
     1441 gctcggatgc cgagttcaac atcggcaccg cggtcggcgc ggtgcagtcg ctgccgcccg
     1501 gcgtctacat cgcgatgaac ggtcgcgtct gggatccggg caaggtgcgc aagaacgtgg
     1561 ccgcgaaccg gttcgaggcg atcggctagg cgttccccac gccggttcga ggcgatcggc
     1621 tgggcgttcc catgccgcgc tatgaaaaag accccggcgc gagccggggt cttttttcat
     1681 tccatgggaa gcgccgggcg aacccggcgc gaccccacca tcagttgatg gtgcccttca
     1741 gcgtcacgcc cgagtaggcc gagtacgcac gcacggagac gtggtaggtg cccgaggtcg
     1801 gcgcgttgaa cgtgcaggtc tcgctgttgc cggtcaggta cggacggcag ttgtacgtgg
     1861 tggtggtcgg cgtggcgccg atccgcacgt acatgtccgc atcgcccgtg ccgcccgaga
     1921 tcgtgaacac cacgctggtc ttgcccgagg gcacggacag cgtgtagtcc ggcgaccacg
     1981 aaccggtcgc gaccgacggc aggctcacgc cgacgccgct ggtcagcacg gtgccgccac
     2041 cgccgccggt gctgtagctg ccggtcagcg tcacgcccga gtacgcggca tagccgtgca
     2101 gcaggacgta gtaggtgccg gccgacggcg cggcgatcga gcaggtctcg gcggtggtgc
     2161 tgccttcgga cgcgcagtcg tgggtggtcg tggtcgggtt ggagccgagc ttggcgtaca
     2221 cgtcgacgtc gcccgaaccg cccgaggtca cgaacttgag gttcgtggcg cccgccggaa
     2281 cgaccagcga gtagtacttg tcgctgcccg tcgcaccgga gatgttgctg accggcgtgc
     2341 cgttggtgag cgccgtcgta ccgccgccac cgccacccga gcagctcacc ccgacggtgt
     2401 tgaacgcggc ggtgacgtcg gccttggcca gaccgaggtc ggtggccgcc gtttcaacgc
     2461 cgcatgcgcc ggagttgaac gtgctgctgg cggtccagta cagcgcgttg gcgcgggcga
     2521 acaccttgaa cgcggtcggg gtgttccagc ccgcggtctt ggccaggttg cagaacgcct
     2581 tgttgtacac acccgaggag tagtgcacgt ccatgccgct ggtgtagttg gcggcgttgt
     2641 cgatcgaggc gccgtcggcg ggcgggttgc acatgtagcg cagcgcgccc gacgacttga
     2701 agatctcctg gccgaccagg aagtcgttgg tgcccttcca gtagtactcg gtcgcctcgc
     2761 cgcccatgtc ggagaacgct tcgttcatgc cgccggacat gcccgagtag gtcaggttgg
     2821 agtgctgttc ggtgaacccg tgcgagacct cgtggccggc cacgtcggcg ctgaccagcg
     2881 ggtagaacgt cgtcgcgccg tcgccgaagt tcatcgtcga gccgtcccag aacgcgttct
     2941 cgtagctggt cttgtagtgc acgcgcatga ccagctggaa ggtcagcgcg ttgtagccgg
     3001 tgtaggccgg gtacatcttg gtgatcacgc cgccgaagta gtgcgcgtcg ttgatcggcg
     3061 agtagccgcc gttgatggtc ttgtaggtgt tgcgcgggca ggtgtacgag aacgccgtcg
     3121 tgctggtggt gccgccgttg aggttcaccg acttcacgtg ggtgttgttc atcgtgcagg
     3181 tggtgccaga ctgcgcgacg tcgttgtagc cgtagatgcc gcccgagccc cactcgtact
     3241 ggccggtctt ggtgttgccg ccggggccgg tgccgaccag cgcgtgggtc aggccttccc
     3301 actgcttgag cacgcggccg ctgttggcgt cgatgatcac gaacgggcgc gtcggcgagc
     3361 cgccgccggt cttgtccgcg aagaaggtca cttcgtatgc gaggcgagcg tggccgtcgt
     3421 cgtcgacgaa caccacttcc ctgctggact cgcgctccgc gttgcggttg ccgaggccgt
     3481 tc
//
LOCUS       DATIQC010000222         2601 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_650854, whole genome shotgun sequence.
ACCESSION   DATIQC010000222 DATIQC010000000
VERSION     DATIQC010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650854"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..886
                     /locus_tag="VLM17_04680"
                     /pseudo
     CDS             1..886
                     /locus_tag="VLM17_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007966942.1"
                     /note="catalyzes a two-step reaction, first charging a
                     tryptophan molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; incomplete; partial in
                     the middle of a contig; missing N-terminus and C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
     gene            994..1320
                     /locus_tag="VLM17_04685"
     CDS             994..1320
                     /locus_tag="VLM17_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005407713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64885.1"
                     /translation="MNNLAAAPDLALVLFAPWFLILAVLYWLYPRQPRDGARRLFDGV
                     TLLVAVVAFVATLHWAHGHASRAHGTMWPQILATSAGYGVFLLVLTVAVFVRRAWLRR
                     RASMRV"
     gene            complement(1377..1763)
                     /locus_tag="VLM17_04690"
     CDS             complement(1377..1763)
                     /locus_tag="VLM17_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005416164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR64886.1"
                     /translation="MAHRSRLAGFIIDCQVDDLDAAARFWSQAIGASIADANAGDDTA
                     EYQNFGNTPGGLHIEVQKVAHPSRVHLDIETDDLDAEVARLEALGAKRIGFVKRWWVM
                     EAPTGQRFCVVKMHHPEQGAPPHEWP"
     gene            complement(1901..>2601)
                     /locus_tag="VLM17_04695"
     CDS             complement(1901..>2601)
                     /locus_tag="VLM17_04695"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HSR64887.1"
                     /translation="RSTLSQSGRPMRTQPPGVAASGQPEQLKGVRRNMARVMADAHAN
                     VVPTTLVDDADLHAWLGKQDITARLIRAIVTACKTVPALNAWFDGDKLVRTLHPHVDI
                     GIAVDTDDGLFVPALRNADMLDARGVREGINRLRAQVEERSIAPSELAGYTISLSNFG
                     MFAGRYATPVVVPPCVAIVGAGKLCHDVVAVIGGIEVHRRLPISLTFDHRAATGGEAA
                     RFLKALLDDLGLPQ"
BASE COUNT          368 a          890 c          959 g          384 t
ORIGIN      
        1 gctcaatcgc gcgcacgcgt acaaggcggc gaccgacgag aaccgcgcga gcggtgaaga
       61 tgccgacgcc ggcatcaacg ccggcctgta catgtatccg gtgctgatgg ccgccgacat
      121 cctgatgttc aaggcgcaca agatcccggt cggccgcgac caggtgcagc acatcgagat
      181 ggcgcgcgac atcggccagc gcttcaacca cctctacggc ggcgagttct tcgtgctgcc
      241 ggaagcggcg atcgaggaac aggtggcgac gctgcccggc ctcgacggcc gcaagatgag
      301 caagagctac gacaacacca tcccgctgtt cgcgccgcgc gagcagctga agaagctgat
      361 cttcgcgatc gtcaccgact cgcgcgcgcc cggcgagccg aaggacaccg agggctccgc
      421 gctgttccag ctctaccagg ccttcgccag cgacgccgaa acgcaggcga tgcggcgcgc
      481 gttcgccaac ggcatcggat ggggcgaggc caagcaggcg ctgttcgagc gcatcgacgc
      541 ggaggtcgcg ccgctgcgcg agcgctacga ggcgctggtc gcgaggccgg aggagatcga
      601 gcgccagctg cgcgagggcg cggcgcgcct gcgcgagcgc tatgcgttgc cgacgctgcg
      661 tgccttgcgc gaggcggtcg ggttgcgcga tctcgcccag ggccaggccg gcggcgcgcg
      721 cggcaaggcc aggccggcgc aacccgcgct gccggtattc aagcaatacc gcgagcggga
      781 cggccgcttc tacttcaagc tggtcgatgg cgagcgcgtg ctgctgcaga gcgcgggctt
      841 cgcgtccccg aaggacgcag gcgcccgcat cggtgcgctg aagcgcggcg gcttcgccgg
      901 ccccgacgac gaggtggcgc tgggcgaagg catcgagccg gaagccgtgc gcgcggcgct
      961 cgcggcattg ctggccgccg aggccgaaaa ggcatgaaca acctcgccgc cgcgcccgac
     1021 ctcgcgctgg tgctgttcgc gccgtggttc ctgatcctgg cggtgttgta ctggctgtac
     1081 ccgcgccagc cgcgcgacgg cgcgcggcgc ctgttcgacg gcgtcacgct gctggtcgca
     1141 gtggtcgcgt tcgtcgccac gctgcactgg gcgcacggcc atgccagccg cgcgcacggc
     1201 acgatgtggc cgcagatcct ggcgacctcg gccggctacg gcgtgttcct gctggtgctc
     1261 acggtggcgg tcttcgtgcg ccgggcgtgg ctgcggcggc gcgcgtcgat gcgggtgtag
     1321 ccgccgcccc cggtcccgca gcggcgccga cctgcggcgc gcctacggtc gggtccttac
     1381 ggccactcgt gcggcggcgc gccctgttcg ggatggtgca tcttcaccac gcagaagcgc
     1441 tggccggtcg gcgcctccat cacccaccag cgcttgacga agccgatgcg cttcgcgccc
     1501 agcgcttcca ggcgcgcgac ctccgcgtcg aggtcgtcgg tctcgatgtc caggtgcacg
     1561 cgcgagggat gcgcgacctt ctgcacctcg atgtgaaggc cacccggcgt gttgccgaag
     1621 ttctggtatt cggcggtgtc gtcgcccgca ttggcgtcgg cgatgctggc gccgatcgcc
     1681 tggctccaga agcgcgcggc ggcgtcgagg tcgtcgacct ggcagtcgat gatgaaaccg
     1741 gcgaggcggc tgcggtgcgc cattcattcc tccgcatttt cctgagcccc ccttagtcag
     1801 ggggcgattc gcaccagcgg tgcgaatcgg gggtgtggaa gcacatagcg gggcccaagg
     1861 tttgcgaagc caaccttggg agtaaccagg cggagcctgg ttactgcgga agacccaggt
     1921 cgtccagcag cgccttgagg aagcgcgccg cctcgccgcc ggtggcggcg cggtggtcga
     1981 aggtcagcga gatcggcagg cggcggtgca cctcgatgcc gccgatcacc gcgaccacgt
     2041 cgtggcacag cttgccggcg ccgacgatcg ccacgcacgg cggcacgacg acgggcgtcg
     2101 cgtagcggcc ggcgaacatg ccgaagttgg acagcgagat cgtgtagccg gcgagttccg
     2161 acggcgcgat gctgcgctcc tcgacctgcg cgcgcaggcg gttgatgccc tcgcgcacgc
     2221 cgcgcgcgtc gagcatgtcg gcgttgcgca gcgcgggcac aaacaggccg tcgtcggtgt
     2281 ccaccgcgat gccgatgtcg acgtgcgggt gcagggtgcg gacgagcttg tcgccgtcga
     2341 accaggcgtt gagcgcgggc accgtcttgc aggcggtgac gatcgcgcgg atcaggcgcg
     2401 cggtgatgtc ctgcttgccg agccaggcgt gcaggtcggc atcgtcgacc agcgtggtcg
     2461 gcacgacgtt cgcgtgggcg tcggccatca cccgcgccat gttgcggcgc acgcccttga
     2521 gctgctccgg ctggccgctc gcggcgacgc ccggcggctg cgtgcgcatc ggccggccgg
     2581 actgcgacag cgtgctgcgt c
//
LOCUS       DATIQC010000223         2779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_155800, whole genome shotgun sequence.
ACCESSION   DATIQC010000223 DATIQC010000000
VERSION     DATIQC010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155800"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1082
                     /locus_tag="VLM17_04700"
     CDS             3..1082
                     /locus_tag="VLM17_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019659098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR64888.1"
                     /translation="MAWLAWHLLVGRWHEDTDDAYVQGNVVAITPQTAGTVVSIGADD
                     GMKVTAGQVLVQLDPNDAQVTFAQAVANLAGTVRQVRGLYSAVGAGQADIQAQQVAVQ
                     KARADVARREGLVATGAVSAEELSHAREALAAAQAALAASGEQLSRNRALVDATSLRN
                     QPQVEAAAAQLRTAYLNLRRARIVAPVSGYVAKRSVQLGQRVQPGMPLMTIVPLEQLW
                     VEANFKETQLERMRIGQPVELRSDLYGGDVAFHGHVSSLGLGTGSAFSLLPAQNASGN
                     WIKIVQRVPVRVDLDPQELAKHPLRLGLSMSADVNLHDQNGPVLASAPPEKPLLATRA
                     YDQQLQDADALIDRVVRENLPRGGR"
     gene            1090..2667
                     /locus_tag="VLM17_04705"
     CDS             1090..2667
                     /locus_tag="VLM17_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005919973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HSR64889.1"
                     /translation="MANATTDTPRAAPAGPANGFRPPNLALATLGLALASFMQVLDTT
                     IANVSLPTISGNLGASANQATWVITSFAVSNAIALPLTGYLVRRYGELKLFTLATLAF
                     VIASLLCGLANSMGLLVLARALQGFVAGPMYPVTQALLISIYPPQKRGQAIALLAMVT
                     VVAPIAGPILGGWITDNYSWEWIFFINIPIGIFSSLVVGRQLKGRPERLEKPKMDYVG
                     LATLVLGVGALQVLLDLGNDEDWFNSTRIVVLGVVSAIALVVFVIWELTDRDPIVNLR
                     LFRHRNFSAGTAAMVMAYAAFFSVGLLVPLWLQRNLGYTAIWAGFASAPIGILPVLLT
                     PLVGKYATRMDLRWLATFAFLVMAATSFIRAGFNLDVDFQRVAEVQLLQGLGVALFFM
                     PVLTILLSDLEPHEIAAGSGLATFVRTLGGSFAASLTTWAWTQRSTIHHAQLTEHIGA
                     YDPNIQQTVAALGQGDLQRGAMFLDRMISQQAVQIGFNEIFHLLGICFLVVIAFVWFA
                     RPPFAAKTGGAAAAGGH"
BASE COUNT          408 a          996 c          951 g          424 t
ORIGIN      
        1 gcatcgcctg gcttgcctgg cacctgctcg tcggccgctg gcacgaagac accgacgatg
       61 cgtacgtgca gggcaacgtc gtcgcgatca cgccgcagac cgcgggcacc gtggtcagca
      121 tcggcgccga cgacggcatg aaggtcaccg ccggccaggt gctcgtgcag ctcgatccga
      181 acgacgccca ggtcaccttc gcgcaggccg tcgccaacct cgccggcacc gtgcgccagg
      241 tgcgcggcct gtacagcgcg gtgggcgcgg gacaggccga catccaggcg cagcaggtcg
      301 cggtgcagaa ggcacgcgcc gacgtcgccc gccgcgaggg cctggtcgcc accggcgcgg
      361 tctcggcgga ggagctgtcg catgcgcgcg aagcgctcgc cgccgcccag gccgccctgg
      421 ccgcgtcggg cgaacagctg tcgcgcaacc gtgcgctggt ggacgcgacc tcgctgcgca
      481 accagccgca ggtggaagcc gccgccgcgc agctgcgcac cgcctacctc aacctgcgac
      541 gcgcgcgcat cgtcgcgccg gtgtccggct atgtcgccaa gcgcagcgtg cagctcggcc
      601 aacgcgtgca gccgggcatg ccgctgatga cgatcgtgcc gctcgaacag ctgtgggtgg
      661 aggcgaactt caaggaaacg cagctggagc gcatgcgcat cggccagccg gtggaactcc
      721 ggtccgacct gtacggcggc gacgtcgcgt tccacggcca cgtcagcagc ctcggcctcg
      781 gcaccggcag cgcgttctcg ctgctgcccg cgcagaacgc cagcggcaac tggatcaaga
      841 tcgtgcagcg cgtgccggtg cgcgtcgacc tcgatccgca ggaactggcg aagcacccgc
      901 tgcgcctcgg cctgagcatg agcgcggacg tgaacctgca cgaccagaac ggccccgtgc
      961 tggcgagcgc accgccggaa aagccgctcc tcgccacgcg ggcctacgac cagcagctcc
     1021 aggacgccga tgcgctgatc gaccgagtgg tgcgcgagaa cctgccgcgc ggcggtcgct
     1081 gaggcgtcga tggccaacgc caccacggac accccgcgcg cggcgccggc cgggccggcg
     1141 aacggcttcc gcccgccgaa cctggcgctg gcgacgctcg gcctggcgct ggcgtcgttc
     1201 atgcaggtgc tcgacaccac catcgccaac gtctcgctgc cgaccatcag cggcaacctc
     1261 ggcgcgagcg ccaaccaggc gacgtgggtc atcacctcgt tcgcggtcag caacgcgatc
     1321 gcgctgccgc tgaccggcta cctggtgcgc cgctacggcg aactgaagct gttcaccctg
     1381 gcgacgctgg cgttcgtgat cgcctcgctg ctgtgcggcc tcgcgaacag catgggcctg
     1441 ctggtgctgg cgcgcgcgct gcagggcttc gtcgccggcc cgatgtaccc ggtcacgcag
     1501 gcgctgctga tctcgatcta tccgccgcag aaacgcgggc aggccatcgc gctgctggcg
     1561 atggtcaccg tggtcgcgcc gatcgccggc cccatcctgg gcggctggat caccgacaac
     1621 tacagctggg aatggatctt cttcatcaac atccccatcg gcatcttctc cagcctggtc
     1681 gtcggccgcc agctcaaggg ccggccggaa cggctggaga agccgaagat ggactacgtc
     1741 ggcctggcca cgctggtgct gggcgtgggc gcgctgcagg tgctgctcga cctcggcaac
     1801 gacgaggact ggttcaattc gacccggatc gtggtgctcg gcgtggtgtc ggcgatcgcg
     1861 ctggtggtgt tcgtgatctg ggaactcacc gaccgcgacc cgatcgtcaa cctgcgcctg
     1921 ttccgccacc gcaacttcag cgcgggcacc gccgcgatgg tgatggcgta cgcggcgttc
     1981 ttctcggtcg gcctgctggt gccgctgtgg ctgcagcgca acctcggcta caccgcgatc
     2041 tgggccggct tcgccagcgc gccgatcggc atcctgccgg tgctgctgac gccgctggtc
     2101 ggcaagtacg cgacgcgcat ggacctgcgc tggctggcga ccttcgcctt cctggtgatg
     2161 gcggcgacca gcttcatccg cgccggcttc aacctcgacg tggacttcca gcgcgtggcg
     2221 gaagtgcagc tgctgcaggg cctgggcgtg gcgctgttct tcatgccggt gctgacgatc
     2281 ctgctgtcgg acctggagcc gcacgagatc gccgcgggct cgggcctcgc cacgttcgtg
     2341 cgcacgctcg gcggcagctt cgccgcatcg ctgacgacgt gggcatggac gcagcgcagc
     2401 accatccacc acgcgcagct gaccgagcac atcggcgcct acgacccgaa catccagcag
     2461 acggtcgccg cgctcggcca gggcgacctg cagcgcggcg cgatgttcct cgaccggatg
     2521 atcagccagc aggcggtgca gatcggcttc aacgagatct tccacctgct cggcatctgt
     2581 ttcctggtgg tgatcgcgtt cgtctggttt gcgcggccgc cgttcgccgc gaagacgggc
     2641 ggagcggccg cggctggagg gcactgatcg ggctgcatac cgtgcgaggc aagcgggcct
     2701 gcccatgctt ccccgatgtc gccagtcggc ctagtgcaat gaatgcaggc cgatcatgtt
     2761 gccctcggta tccgtcacc
//
LOCUS       DATIQC010000224         1519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_685905, whole genome shotgun sequence.
ACCESSION   DATIQC010000224 DATIQC010000000
VERSION     DATIQC010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685905"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VLM17_04710"
     CDS             <1..193
                     /locus_tag="VLM17_04710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008437794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSR64890.1"
                     /translation="GRGGIDGEGNGLAGMRERVRALGGSLAIASTRGGTTLEIVVPLP
                     SASLIAAAVQSMSAMEHDA"
     gene            190..786
                     /locus_tag="VLM17_04715"
     CDS             190..786
                     /locus_tag="VLM17_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR64891.1"
                     /translation="MIRVLLAEDQAMVRGALSALLSLEADIEVRGAAADGAGAWRELQ
                     RLKPDVLVTDIEMPGLTGLELAQRIQRHGLATKVVIVTTFARAGFLRRALDAGVAGYL
                     LKDAPAEQLAEALRQVQRGGRAIDPQLALDAWSQADPLNDRERQVLRLAGEGHSAGEI
                     AMRLRLSAGTVRNYLSEAIGKLGVGNRIEAYRLARQKG"
     gene            complement(821..>1519)
                     /locus_tag="VLM17_04720"
     CDS             complement(821..>1519)
                     /locus_tag="VLM17_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HSR64892.1"
                     /translation="GVCFDTGGLDIKPADGMRNMKKDMGGAAHAIALAELVMARKLPL
                     RVTLLVPAVENAIGPDAYRPGEVVRTRKGLSVEIDNTDAEGRVVLCDALAYAAEQKPA
                     VLIDFATLTGAARIALGPDLPVLYANDDALANAWLGAGESERDPLWRLPLWRPYLRYL
                     TSNVADLANAGPSKMAGSITAALFLDRFVPRTLPWAHLDVYSWNDSDRPGRPTGGEAQ
                     GLRAAWAMLSQRFG"
BASE COUNT          196 a          553 c          566 g          204 t
ORIGIN      
        1 cggccgcggc ggcatcgacg gcgagggcaa cggcctggcc gggatgcgcg aacgcgtgcg
       61 cgcgctgggc ggcagcctgg cgatcgcgtc gacgcgcggc ggcaccaccc tcgagatcgt
      121 ggtgccattg ccgagcgcct cgttgatcgc ggccgccgtg cagtcgatgt cggcgatgga
      181 gcacgacgcg tgatccgggt gctgctggcg gaagaccagg cgatggtgcg cggcgcgctg
      241 tcggcgctgc tgtcgctgga agcggacatc gaggtgcggg gcgcggccgc cgacggcgcg
      301 ggcgcgtggc gcgaactgca gcgcctcaag cccgacgtgc tggtcaccga catcgagatg
      361 ccgggcctca ccggcctcga gctcgcgcag cgcatccagc gccacggcct ggcgacgaag
      421 gtcgtcatcg tcaccacctt cgcccgcgcc ggcttcctgc gccgcgcgct cgacgccggc
      481 gtcgccggct acctgctcaa ggacgcgccg gccgagcagc tcgccgaggc cctgcgccag
      541 gtgcagcgcg gcggccgcgc gatcgacccg cagctcgcgc tggatgcatg gagccaggcc
      601 gatccgctca acgaccgcga gcggcaggtg ctgcgcctgg ccggcgaagg ccattccgcc
      661 ggcgagatcg ccatgcggtt gcggctgtcg gcgggcaccg tgcgcaacta cctgtccgag
      721 gcgatcggca agctcggcgt cggcaaccgc atcgaggcct accggctggc gcggcagaag
      781 ggctagctct agcccgccgc cgcgggcgcc gcgcgcccct tcaaccgaag cgctggctga
      841 gcatcgccca cgccgcgcgc aggccctgcg cctcgccacc ggtgggacgg ccggggcggt
      901 cgctgtcgtt ccagctgtac acgtccaggt gcgcccacgg cagcgtgcgc ggcacgaagc
      961 ggtccaggaa cagcgcggcg gtgatgctgc cggccatctt cgacggtccg gcgttggcga
     1021 ggtcggcgac gttgctggtg aggtagcgca ggtacggccg ccacagcggc agccgccaga
     1081 gcggatcgcg ttcgctctcg ccggcgccga gccaggcgtt ggcgagcgca tcgtcgttgg
     1141 cgtacagcac cggcaggtcg gggccgagcg cgatgcgcgc ggcgccggtg agggtggcga
     1201 aatcgatcag caccgccggc ttctgctcgg cggcgtaggc cagcgcgtcg cacagcacca
     1261 cccggccctc ggcgtcggtg ttgtcgattt ccaccgacag tcccttgcgc gtgcgcacca
     1321 cttcgcccgg gcggtacgcg tcggggccga tcgcgttctc caccgccggc accagcagcg
     1381 tgacccgcag cggcagcttg cgcgccatca ccagttcggc cagcgcgatc gcgtgcgcgg
     1441 cgccgcccat gtccttcttc atgttgcgca tgccgtcggc gggcttgatg tccaggccgc
     1501 cggtgtcgaa gcacacgcc
//
LOCUS       DATIQC010000225         3994 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_14887, whole genome shotgun sequence.
ACCESSION   DATIQC010000225 DATIQC010000000
VERSION     DATIQC010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3994
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14887"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..727
                     /locus_tag="VLM17_04725"
     CDS             2..727
                     /locus_tag="VLM17_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HSR64893.1"
                     /translation="MHVPSRTAFAVLPFLFAVAGIAAAQAPAPLPADGTLLQVSAHAE
                     AHRVPDVATISAGVVTQAADANAAMRANAQQMDKVMAAVRTAGIAERDIQTSGINVSP
                     QYRYAENQPPAITGYQAGNTVSLKVRDIARLGKVLDALVASGANQLNGPSFEVDQPEA
                     AYDEARRAALDKAQARAAMYAKALGLRVRRIVSIGEGGGYRPPVPLPVMAMARAEKAA
                     DTAVSPGETTLGADLDVVFELGR"
     gene            733..927
                     /locus_tag="VLM17_04730"
     CDS             733..927
                     /locus_tag="VLM17_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64894.1"
                     /translation="MGKRDEGRPPAPDPRRGKNPGYAEPRPKNREEARQPVARKPAPS
                     PDEPGMRRDPDPPPDPAGKH"
     gene            1162..1842
                     /locus_tag="VLM17_04735"
     CDS             1162..1842
                     /locus_tag="VLM17_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HSR64895.1"
                     /translation="MVHAARFPTQVPGFVEVPSLDFNRIFGYATAILVHGVLLMLLLV
                     PITAPPALAPPRVEQPYVPIERKLEPPPPLPPIRVPVVQHPTHPAPTRPVQQPMQPLD
                     PQPVVDRAAVTDPVPAQPPVDTGNTIQPPVGPVAGVQLEYAQAPAPAYPRDALRDGVE
                     GSVLLKVLVDIDGRPLEVQVARSSGNRSLDRAAREQVLQRWRFRPAMQGGRAVRAIGL
                     VPVDFRLQ"
     gene            complement(1950..2420)
                     /gene="rlmH"
                     /locus_tag="VLM17_04740"
     CDS             complement(1950..2420)
                     /gene="rlmH"
                     /locus_tag="VLM17_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HSR64896.1"
                     /translation="MKARLVAVGERAPAWVAQGFAEYQKRLSHWLPLDLVEVEPGLRG
                     KGRDAARATVDEGARVLSALQKGAQVVALDGRGRAWSSEQLAQRLEHWRAQGRDLAFL
                     IGGPEGHAPDVLARADESWSLGPLTLPHMLVRLVVAEQLYRAAALLANHPYHRA"
     gene            complement(2440..2856)
                     /gene="rsfS"
                     /locus_tag="VLM17_04745"
     CDS             complement(2440..2856)
                     /gene="rsfS"
                     /locus_tag="VLM17_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HSR64897.1"
                     /translation="MTSQAQVIKTQLPHPAPPADVLLKAVHAALEELKARDAVEIDVR
                     GKSSVTDYMIVASGTSTRHVKSIADEVIRFVKKLDVQPLGVEGEREAEWVLVDLGDVV
                     VHVMLPRVREFYALERLWTVGDQPPEALPTALEGGL"
     gene            complement(2926..3582)
                     /gene="nadD"
                     /locus_tag="VLM17_04750"
     CDS             complement(2926..3582)
                     /gene="nadD"
                     /locus_tag="VLM17_04750"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HSR64898.1"
                     /translation="MAGLRIFYGGTFDPVHEGHLAIARAARASFGEPVHVMPAADPPH
                     RPPPGASAHHRVAMLELALVGEPGLLLDLRELHRDGPSYSVDTLHALRAEFGADAPLA
                     LLVGADSFLGLPTWHRWQELFGLAHFIVAGRPGSLLETAPAELRAAADGRWTEDPAAL
                     RAAPAGALLHLHQSLHVHSATAVRRLIGEGRAWQHLLPPAVAGYVQAHGLYGAAGADR
                     "
     gene            complement(3582..>3994)
                     /gene="holA"
                     /locus_tag="VLM17_04755"
     CDS             complement(3582..>3994)
                     /gene="holA"
                     /locus_tag="VLM17_04755"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HSR64899.1"
                     /translation="YDVFRLLDAALNGRTAQVPRMLAGLRAEGEAVPALLGMVVRELQ
                     ATAALARVQARGGNLASEFKAQRIWDSKQAMYKRALQRHAAPRWERFVAEAGRVDRIA
                     KGRDRAGEDPGDAWLALERLLVAVADAKAQVLVV"
BASE COUNT          544 a         1501 c         1448 g          501 t
ORIGIN      
        1 catgcacgtt ccgtcgcgca ccgccttcgc cgtcctgccc ttcctgttcg ccgtcgccgg
       61 catcgccgcc gcgcaggcgc ccgcccccct gcctgccgat ggcaccctgc tgcaggtgtc
      121 cgcgcacgcc gaggcgcacc gcgtgcccga cgtggcgacg atctccgcgg gcgtcgtcac
      181 ccaggccgcc gacgccaatg ccgcgatgcg cgccaacgcg cagcagatgg acaaggtgat
      241 ggccgcggtg cgcacggccg gcatcgcgga acgcgacatc cagaccagcg gcatcaacgt
      301 cagtccccag taccgctatg cggagaacca gccgccggcg atcaccggat accaggccgg
      361 caacacggtc agcctgaagg tgcgcgacat cgcccggctc ggcaaggtgc tggacgcgct
      421 cgtcgccagc ggcgccaacc agctcaacgg cccgagcttc gaagtcgacc agcccgaggc
      481 cgcctacgac gaggcccgtc gcgccgcgct cgacaaggcg caggcgcgcg cggcgatgta
      541 cgccaaggcg ctgggcctgc gcgtgcgccg catcgtgagc atcggcgaag gcggcggcta
      601 ccgcccgccg gtgccgctgc cggtgatggc gatggcgcgc gccgagaagg cagccgacac
      661 ggcggtgtcg ccgggcgaga cgacgctggg cgccgacctg gacgtggtgt tcgaactcgg
      721 gaggtaaggg ccatgggcaa gcgggacgaa ggcaggccgc cggcccccga tccgcgtcgc
      781 gggaagaacc ccggctacgc cgagccgcgc ccgaagaatc gcgaggaggc gcgccagccg
      841 gtcgcgcgca agcccgcccc cagccccgac gagcccggca tgcgccgcga tccggacccg
      901 ccaccggatc cggccggcaa gcattgatcg cagccacggc ccgccctgcg cgggccgttt
      961 ccgttcgggc aggcgcatcc gccgtccagc cgcactgccc gtcccgcccg tcgccggagt
     1021 cgccggagtc gccacgcatc tttccatacg tgacagtacg ggagcagggt cgggctgcgc
     1081 gtcccggggc gccaaccccg cggccgccgc ccgtgcgttc gccctgtcgc gacgcgccct
     1141 tcaaccgaca ggaggtggcc catggtgcat gcagcccgct ttccgaccca ggtgcccggc
     1201 ttcgtcgagg tcccgagcct cgacttcaat cgcatcttcg gctacgccac cgcgatcctc
     1261 gtgcacggcg tcctgctgat gctgctgctc gtgccgatca ccgcgccgcc ggccctcgcc
     1321 ccgccccggg tcgagcagcc ttacgtgccg atcgaacgca agctcgagcc gccccctccg
     1381 ctgcccccga tcagggtacc ggtcgtgcag catccgacgc accccgcccc cacccgtccg
     1441 gtccagcagc cgatgcagcc gctcgacccg caacccgtcg tcgaccgggc ggccgtgacc
     1501 gatccggtcc ccgcgcagcc gccggttgat accggcaaca cgatccagcc gccggtcggc
     1561 ccggtcgccg gcgtgcagct cgaatacgcg caggcaccgg cgccggccta cccgcgcgac
     1621 gcgctgcgcg acggcgtgga aggcagcgtg ctgctgaagg tgctggtcga catcgatggc
     1681 cgcccgctgg aggtgcaggt cgcgcgcagc agcggcaacc gcagcctcga ccgcgccgcg
     1741 cgcgagcagg tgctccagcg ctggcgcttc cgcccggcga tgcagggcgg gcgcgcggtg
     1801 cgggcgatcg ggctggtgcc ggtggatttc aggttgcagt gagcgggcaa cggaaggcgg
     1861 ccggacgccg gtcgtccggc caacgcgcgg ggcatggcgc cgcatgcgcg tcctgcggac
     1921 cggcgcggcg acacggcgac gcgccgcgct caggcccggt ggtaggggtg gttcgcgagc
     1981 agcgccgccg cgcggtacag ctgctcggcg accaccagcc gcacgagcat gtgcggcagc
     2041 gtcagcgggc cgagcgacca gctttcgtcg gcccgtgcaa gcacgtcggg cgcgtgtcct
     2101 tccgggccgc cgatcaggaa ggcgagatcg cgcccctgcg cgcgccagtg ttcgaggcgt
     2161 tgcgcgagct gctcggaact ccacgcgcgg ccgcgtccgt ccagcgccac cacctgcgca
     2221 cccttctgca atgcggacag gacgcgtgcg ccttcgtcga cggtcgcgcg cgcggcgtcg
     2281 cggcccttgc cgcgcaggcc gggttcgact tcgacgaggt ccagcggcaa ccagtgcgac
     2341 aggcgcttct ggtattcggc gaatccctgc gcgacccagg cgggcgcgcg ttcgccgacg
     2401 gcgaccaggc gcgccttcat cgcgcgcgcc tcgctgcgct cagaggccgc cttcgagggc
     2461 ggtcggcagc gcttccggcg gctggtcgcc gaccgtccac aggcgctcga gcgcgtagaa
     2521 ctcgcgcacg cgcggcagca tgacgtggac gacgacgtcg ccgaggtcga ccaggaccca
     2581 ctccgcctcg cgctcgcctt cgacgccgag cggctgcacg tcgagcttct tgacgaagcg
     2641 gatgacttcg tcggcgatcg acttgacgtg tcgcgtggac gtgcccgagg cgacgatcat
     2701 gtagtcggtg acgctgctct tgccgcggac gtcgatctcg acggcatcgc gggccttcaa
     2761 ctcctcgagc gcggcatgca ccgccttgag caggacatcg gcgggcggcg ccgggtgcgg
     2821 cagttgggtc ttgatgacct gggcttggct ggtcaagggc ggcttgctcg gaacgtctgg
     2881 cgtggggccg gcggcagtat agcgaagcgc ccggtcacgg ccggatcaac ggtccgcccc
     2941 ggcggcgcca tacaggccgt gcgcctgcac gtagccggcc accgcgggcg gcaacaggtg
     3001 ctgccaggcc ctgccttcgc cgatcagccg ccgcaccgcg gtcgccgaat gcacgtgcag
     3061 ggactggtgc aggtgcagca gggcgccggc gggggcggcg cgcagggcgg cggggtcttc
     3121 ggtccagcgg ccgtcggcgg cggcccggag ttcggcgggc gcggtttcga gcaggctgcc
     3181 cggacggccg gcgacgatga agtgggcgag cccgaacagt tcctgccagc gatgccaggt
     3241 cggcaggccg aggaaactgt cggcaccgac cagcaacgcc agcggcgcgt cggcgccgaa
     3301 ctcggcgcgc aacgcgtgca gcgtgtcgac gctgtaggac gggccgtcgc gatgcagttc
     3361 gcgcaggtcg agcagcaggc ccggttcgcc gaccagcgcc agttcgagca tggcgacgcg
     3421 gtggtgcgcg ctggcgccgg gcggcggacg gtgcggcggg tcggcggccg gcatcacgtg
     3481 caccggttcg ccgaagctgg cgcgcgcggc gcgggcgatc gccaggtgcc cctcgtgcac
     3541 cgggtcgaag gtaccgccgt agaagatgcg caggcccgcc atcaaaccac cagtacctgt
     3601 gccttcgcgt cggcgaccgc gaccagcaac cgctccagcg cgagccaggc gtcgcccggg
     3661 tcctcgccgg cgcggtcgcg gcccttggcg atgcggtcga cgcgccccgc ctcggcgacg
     3721 aagcgctccc agcgcggcgc cgcgtggcgc tgcagcgcgc gcttgtacat cgcctgcttc
     3781 gaatcccaga tccgctgcgc cttgaactcc gaggcgaggt tgccgccgcg cgcctgcacg
     3841 cgggcgagcg cggccgtcgc ctgcaattcg cgcacgacca tgccgagcag cgccggcacc
     3901 gcctcgccct cggcgcgcag cccggcgagc atgcgcggca cctgcgccgt gcgcccgttg
     3961 agcgcggcgt cgagcaggcg gaacacgtcg tagc
//
LOCUS       DATIQC010000226         5036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_685950, whole genome shotgun sequence.
ACCESSION   DATIQC010000226 DATIQC010000000
VERSION     DATIQC010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_685950"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..900
                     /gene="zapE"
                     /locus_tag="VLM17_04760"
     CDS             <1..900
                     /gene="zapE"
                     /locus_tag="VLM17_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HSR64900.1"
                     /translation="VWGGVGRGKTFLVDLFFDALDVGGKRRTHFHRFMREVHERLRAH
                     AGERDPLAAIAREWGEALRVLVLDEFFVSDIGDAMLLARLLERLFAEGVVLVTSSNTA
                     PANLYAGGLQRARFLPAIALLERHCAVLHLDSPQDYRLRALTRSPVYRAPLDAQSDAW
                     LAARWRELSAGCPLEQGPLRVDDRPIDARALAEGYAWFDFAALCEGPRASADYIEIAR
                     EFHTVLLGGIPCFGAQRDDAARRFVHLVDELYDRHVNLVCTADAAPPALYAGERLAGA
                     FERTASRLIEMQSAEYLALEHRG"
     gene            complement(970..1896)
                     /locus_tag="VLM17_04765"
     CDS             complement(970..1896)
                     /locus_tag="VLM17_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSR64901.1"
                     /translation="MGRPSLHALPGFVAAARTGNLSRAAESLHLTVSALSHQIRGLEE
                     RMGRRLFVRNARGVTLTADGRQLFDRVAPHFDALELAMRPYRARRDEVLTLTLMPSFA
                     ASWLVPRLPRFLAAHPQLEINLQSSTAVVDFDREPGVDAGLRFGPGRWPGVHAVHLMD
                     DWVTPTASPALLARLGRPTLRTLDRFPLLGAPGGRWSEWFAHFGGRLPKRFVATFDDS
                     DTLHRAAAEGLGIALGRMTLVRPLVEAGRLEALFDERLKAEFAHYLVYPPRSEGHAGL
                     AALRAWLLEEARTDSAVPAPAPSPLPTRRRRR"
     gene            1999..2304
                     /locus_tag="VLM17_04770"
     CDS             1999..2304
                     /locus_tag="VLM17_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64902.1"
                     /translation="MKLSQLSAGLLFLHGHISDPALATALADASERASTRTSRSRAMH
                     LLGSLAYLGGRPMHPGHNFDLEEPFEQPASGRRGARGRPFGPARRPRAVQATCTGCG"
     gene            2398..2589
                     /locus_tag="VLM17_04775"
     CDS             2398..2589
                     /locus_tag="VLM17_04775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64903.1"
                     /translation="MHLFKSELLHEPPRPAARSYARPAYGPRYSRRSPASPTPPPDER
                     LASPPPAAPDAWPVFDRAA"
     gene            2768..3619
                     /locus_tag="VLM17_04780"
     CDS             2768..3619
                     /locus_tag="VLM17_04780"
                     /inference="COORDINATES: protein motif:HMM:NF042727.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6662 family protein"
                     /protein_id="HSR64904.1"
                     /translation="MRRLLPCALLLLAPALAHADENYFGYTYGAETLPRGANEAYFWW
                     THRTGKGEGSYRADDVQLEFEHGWSDRFQTSFYLTGRAFDYAGGAVRDEETGAAKTLH
                     RNLDFDGAKVEFKWNLKSAERDGYGLALYVEPEYSTLHRPDGERFKEAAFETKLILQK
                     NFLEDQLVTAYNLTLEPEWEKEAGSWERELYVENSAGVSYRFAPRWFAGLETRVDMAY
                     PDYSRREFWAWYAGPTIHYGGEKYWATLSWMPQIKGGPTDPDRSTRLTLEERERSEVR
                     LKLGLNF"
     gene            3630..3731
                     /locus_tag="VLM17_04785"
     CDS             3630..3731
                     /locus_tag="VLM17_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6662 family protein"
                     /protein_id="HSR64905.1"
                     /translation="MTLRKFETEVGQERWSVFAGPTCTTAANGGGRR"
     gene            3728..3850
                     /locus_tag="VLM17_04790"
     CDS             3728..3850
                     /locus_tag="VLM17_04790"
                     /inference="COORDINATES: protein motif:HMM:NF042727.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6662 family protein"
                     /protein_id="HSR64906.1"
                     /translation="MTRLPQLRGGGEQYAGQTHHDLHLVEKTRQETRFKLGLDS"
     gene            3853..4389
                     /locus_tag="VLM17_04795"
     CDS             3853..4389
                     /locus_tag="VLM17_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HSR64907.1"
                     /translation="MDRRFHVQWLLLPATALAAAPAVATTYFTVEQAQQAMLPGQALA
                     PLAITLTPAQAKAVEQASGVRVRERALKVWRAANGGWFYLDQVLGKHEFITYALALDA
                     HGAVTGLEILDYRETYGGAVRNPKWRAQFSGKRHGAPLKLDADIANLSGATLSSAHIA
                     DGVRRLLATHALVVAPAR"
     gene            4397..>5036
                     /locus_tag="VLM17_04800"
     CDS             4397..>5036
                     /locus_tag="VLM17_04800"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0017013 - protein flavinylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HSR64908.1"
                     /translation="MRVERARPLLGTLVAVRAEGPGARVEAGIARAFEAIATVQAAMS
                     FHDPASELSRLNRHAFDAPQLVDGPTWRVLRAALALARASGGRFDPTVGGRLVAWRQL
                     PAPSRTQVDPAADCRDVQLGRGRRVRFRKPLWLDLGGIAKGFAVDRAVAALRAAGVRS
                     GVVNAGGDLRVFGDAPEVVHVRDPAAPGLARPLLQLRAGAVATSAGYFSEREG"
BASE COUNT          723 a         1836 c         1797 g          680 t
ORIGIN      
        1 gtgtggggcg gggtcggtcg cggcaagacg ttcctcgtcg acctgttctt cgacgcgctc
       61 gacgtcggcg gcaagcgccg cacccacttc caccgcttca tgcgcgaagt gcacgaacgg
      121 ctgcgcgcgc acgcgggcga acgcgacccg ctcgcggcga tcgcgcgcga gtggggcgag
      181 gcgctgcggg tgctggtgct cgacgagttc ttcgtcagcg acatcggcga cgcgatgctg
      241 ctggcgcggc tgctcgagcg cctgttcgcc gaaggcgtgg tgctggtgac cagttccaac
      301 accgcgcccg ccaacctgta cgccggcggc ctgcaacgcg cgcgcttcct gccggcgatc
      361 gcgctgctcg agcgccattg cgcggtactg cacctcgaca gcccgcagga ctaccggctg
      421 cgcgcgctga cccgctcgcc ggtgtaccgc gcgccgctgg acgcgcagtc cgacgcctgg
      481 ctggccgcgc gctggcgcga gctcagcgcg ggctgtccgc tggagcaggg gccgctgcgc
      541 gtcgacgacc gcccgatcga cgcgcgcgcg ctggccgagg gctatgcctg gttcgacttc
      601 gccgcgctgt gcgaggggcc gcgcgccagc gcggactaca tcgagatcgc gcgcgaattc
      661 cacaccgtgc tgctcggcgg catcccgtgc ttcggcgcgc agcgggacga cgccgcgcgc
      721 cgcttcgtgc acctcgtcga cgaactgtac gaccgccacg tcaacctcgt ctgcaccgcc
      781 gacgcggcgc cgccggcgct gtacgcgggc gaacggctgg cgggcgcgtt cgagcgcacc
      841 gcgtcgcggc tgatcgagat gcagtcggcg gaatacctgg cgctggaaca ccgcggctag
      901 cgcgctggcg ccacaccgga agacgcactc gcgaccggaa gccactttcg cccctggtcc
      961 gcccgcgcgc tagcggcgcc ggcgtcgggt cggaagcggg gacggcgccg gcgccggcac
     1021 ggcgctgtcg gtgcgtgctt cctcgagcag ccacgcgcgc aacgcggcca ggcccgcgtg
     1081 cccttccgaa cgcggcggat acaccaggta gtgggcgaat tcggccttca ggcgctcgtc
     1141 gaacagcgcc tccagccggc ccgcctccac cagcggccgc accagcgtca tgcgcccgag
     1201 cgcgatgccg aggccctcgg cggcggcgcg atgcagcgtg tcggaatcgt cgaaggtggc
     1261 gacgaaacgc ttcggcagcc tgccgccgaa gtgcgcgaac cactcgctcc agcggccgcc
     1321 gggcgcgccc agcagcggga aacgatcgag cgtgcgcagc gtcggccgcc ccagtcgcgc
     1381 gagcagcgcc gggctcgcgg tcggcgtgac ccagtcgtcc atgaggtgca ccgcgtgcac
     1441 gcccggccag cggccggggc cgaagcgcag gccggcgtcg acgcccggct cgcgatcgaa
     1501 gtcgaccacc gccgtgctcg actgcaggtt gatctccagt tggggatgcg cggcgaggaa
     1561 gcgcggcagc cgcggcacca gccagctcgc ggcgaacgac ggcatcagcg tcagcgtcag
     1621 cacctcgtcg cggcgcgcgc gataagggcg catcgccagt tcgagcgcgt cgaaatgcgg
     1681 cgcgacgcga tcgaacagct ggcggccgtc ggcggtgagc gtgaccccgc gcgcattgcg
     1741 cacgaacagg cgccggccca tgcgctcctc gaggccgcgg atctggtggc tgagcgcgct
     1801 gacggtgagg tgcagcgatt cggccgcgcg cgacaggttg ccggtgcgcg cggcggccac
     1861 gaagccgggc agggcatgca gggacgggcg gcccatggct ttgaaccaga ttcaagtcag
     1921 gcttgccaaa ttagcgattt tcgcggcatg tgcaaggtcc tatcgttcta ttccactcaa
     1981 cacatgagga gcagcgcgat gaagctttcc cagctgtcgg ccggcctgtt gttcctgcac
     2041 ggccacattt ccgatccggc cttggcgacg gcgctggccg atgcgtcgga gcgtgcgtcc
     2101 acccggacat cgcggagccg ggccatgcac ctgctcggga gcctggcgta cctcggcggg
     2161 cgaccgatgc atccgggcca caacttcgat ctcgaggagc ccttcgaaca gccggcgtcc
     2221 ggccggcgcg gggcgcgcgg acggccgttc ggcccggcgc ggcggccgcg cgccgtgcag
     2281 gccacctgca cgggctgcgg ctgatcgcga cacgaaaccg caaaccggct ggcgcggaca
     2341 tgtcatgcac ggacgcgagg atggacgcgc ccagccacgc actttccgga gcacgccatg
     2401 cacctgttca agagcgaact gctgcacgag ccgccgcgtc ccgcggcgcg ctcctacgca
     2461 cgccctgcct acggcccgcg ctattcgcgc cgttcgccgg cgagcccgac gcccccgccc
     2521 gatgagcggc tggcgtcgcc gcccccggcc gcgccggatg cgtggccggt cttcgatcgt
     2581 gccgcctgac gccatcgccg cctgaccgca tcgatccccc ggccgcgcgc cgggggatcg
     2641 catttggcaa ccgcctgcga catccgcgac ccgccgcggg cgatggggcg ggcccgccgc
     2701 gcttgactct ccgtcgataa atgcgaatca ttcgcattcg catcctttat ccccgaccgg
     2761 acccgccatg cgccgcctgc tgccctgcgc cctgctcctg ctcgctcccg ccctcgccca
     2821 cgccgacgag aactacttcg gctacaccta cggcgccgag acgctgccca ggggcgccaa
     2881 cgaggcctac ttctggtgga cccaccgcac cggcaagggc gaaggcagct atcgcgccga
     2941 cgacgtgcag ctggagttcg agcacggctg gagcgaccgt ttccagactt cgttctacct
     3001 gaccggccgc gcgttcgatt acgccggcgg cgcggtccgg gacgaggaga ccggcgcggc
     3061 gaagaccctg caccgcaacc tcgacttcga cggcgccaag gtcgagttca agtggaacct
     3121 gaaaagcgcc gagcgcgacg gctacggcct ggcgctgtat gtcgaacccg aatactcgac
     3181 gctccaccgc cccgacggcg agcgcttcaa ggaagccgcg ttcgagacca agctgatcct
     3241 gcagaagaac ttcctcgagg accagctggt caccgcgtac aacctcaccc tcgagccgga
     3301 gtgggagaag gaagcgggaa gctgggagcg cgagctgtac gtcgagaaca gcgccggcgt
     3361 gtcgtaccgc ttcgcgccgc gctggttcgc cggcctcgag acgcgcgtgg acatggccta
     3421 tcccgattat tcccgccgcg agttctgggc ctggtatgcc ggcccgacca tccattacgg
     3481 cggcgagaag tactgggcga cgctgagctg gatgccgcag atcaagggcg gcccgaccga
     3541 tccggatcgc tcgacgcgcc tgaccctgga agagcgcgag cgcagcgagg tgcggctgaa
     3601 gctcggcctg aacttctgag ccgccggcga tgacgctccg caagttcgag accgaagtcg
     3661 ggcaggagcg ctggagcgtg ttcgccggcc cgacctgcac tacggcggcc aacggtggtg
     3721 ggcgacgatg acccggctgc cgcagctgcg cggcggcggc gagcagtatg ctgggcagac
     3781 ccatcacgac ctgcacctgg tcgaaaagac ccggcaggaa acccgcttca agctcggcct
     3841 cgactcctga ccatggaccg ccgcttccac gtgcaatggc tgctgctgcc cgcgaccgcg
     3901 ctggccgcgg cgccggcggt cgcgaccacc tatttcacgg tcgaacaggc gcagcaggcg
     3961 atgctgccgg gacaggcgct ggcaccactc gcgatcacgc tgacgcccgc gcaggcgaag
     4021 gcggtcgagc aggccagcgg cgtgcgcgtg cgcgagaggg cgctgaaggt gtggcgcgcg
     4081 gccaacggcg gctggttcta cctcgaccag gtgctgggca agcacgagtt catcacctac
     4141 gccctggccc tggacgcgca cggggccgtg accggactgg agatcctcga ctaccgcgag
     4201 acctacggcg gcgcggtgcg caacccgaag tggcgcgcgc agttcagcgg caagcgtcac
     4261 ggcgcgccgc tcaagctcga cgccgacatc gccaacctct ccggtgcgac gctgtcgagc
     4321 gcgcacatcg ccgacggcgt gcgccgcctc ctcgccaccc atgcgctcgt cgtcgcgccc
     4381 gcgcgctgag gacctcgtgc gcgtcgagcg cgcgcggccg ctgctcggca cgctggtggc
     4441 cgtgcgcgcg gaagggcccg gcgcgcgggt ggaggccggc atcgcgcgcg ccttcgaagc
     4501 gatcgcgacg gtgcaggcgg cgatgagctt ccacgacccg gcgtcggagc tgtcgcgcct
     4561 caaccggcat gcgttcgatg cgccgcagct tgtcgacggg ccgacctggc gcgtgctgcg
     4621 cgcggcgctc gcattggcgc gggcgagcgg cggccggttc gacccgaccg tcggcggtcg
     4681 gctggtcgcc tggcggcagt tgccggcacc gtcgcgcacg caggtcgacc cggccgccga
     4741 ctgtcgcgat gtccaactcg gtcgcggccg gcgcgtgcgc ttccgcaagc cgctgtggct
     4801 ggacctcggc ggcatcgcca agggcttcgc ggtcgaccgc gcggtcgccg ccctgcgcgc
     4861 ggccggcgtg cggtcgggcg tggtcaatgc cggcggcgac ctgcgcgtgt tcggcgacgc
     4921 accggaagtc gtgcacgtgc gcgatccggc cgcgccgggc ctcgcgcggc cgctgctgca
     4981 gctgcgcgcg ggcgcggtgg cgaccagcgc cggctacttc agcgaacgcg agggtc
//
LOCUS       DATIQC010000227         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_50019, whole genome shotgun sequence.
ACCESSION   DATIQC010000227 DATIQC010000000
VERSION     DATIQC010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50019"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..301)
                     /locus_tag="VLM17_04805"
     CDS             complement(<1..301)
                     /locus_tag="VLM17_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008434046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M20"
                     /protein_id="HSR64909.1"
                     /translation="MQRFLPSALTLAVALAIGSASAANAPTFDPQRLSQEVKVLSSDD
                     FAGRGPATPAEDKVIAYVIGQFRSAGLAPGGDLLKDGKRSWTQAVPLLRSEITGTP"
     gene            complement(441..>1540)
                     /locus_tag="VLM17_04810"
     CDS             complement(441..>1540)
                     /locus_tag="VLM17_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR64910.1"
                     /translation="ARKTLAVLNLGQTTVVAIGVTAMMWDAAAGVVAGRMTVGDLVLV
                     NAYLLQLAAPLNLLGMMYREVKAAFTNLERLFGLLDERQDVQDRVGALPLRTHRPRVA
                     FEGVSFAYDPRRPILQDVSFAIEPGQTVAVVGHSGSGKSTLARLLYRFYDVDDGRIAI
                     TDDVGLPRDIRDYTQATVRGAIAIVPQDTVLFNDTIYYNIQYGRPEASRAEVEAAARA
                     AHIHDLIAALPDGYDPEVGERGLKLSGGEKQRVAIARALLKNPAILLFDEATSALDSK
                     SERAIQAELDRIAVGRTTLMIAHRLSTVMHADEILVLDAGRIVERGTHDALIARDGQY
                     AQMWRLQQQAQQAAAQAAAAEQAAETIGERG"
BASE COUNT          207 a          528 c          573 g          232 t
ORIGIN      
        1 gcggagtgcc ggtgatttcc gaacgcagca gcggcaccgc ctgggtccag ctgcgcttgc
       61 cgtccttgag caggtcgccg cccggcgcga ggccggcgga gcggaactgg ccgatcacgt
      121 aggcgatcac cttgtcctcg gccggggtgg ccgggccgcg gcctgcgaag tcgtcggagg
      181 acagcacctt cacttcctgc gacaggcgct ggggatcgaa ggtcggggcg ttggcggcgc
      241 tggcgctgcc gatggcgagc gccaccgcga gcgtcagggc ggaaggcagg aatcgctgca
      301 tgggggacat cctgggaaga cgaaacccgt cgatggtagg cagccgcacg tgaacgcgca
      361 taggccatcg gtcgggatgg ctgcgcgggc ggtcacgttt ttgcgggacg cgggccccgg
      421 ctggcgggcg cattcaggac ctagccgcgc tcgccgatcg tctccgccgc ctgctcggcg
      481 gccgcggcct gcgccgccgc ctgctgcgcc tgctgctgca gccgccacat ctgcgcgtac
      541 tggccgtcgc gggcgatcag cgcgtcgtgc gtgccgcgct cgacgatgcg accggcgtcg
      601 aggacgagga tctcgtcggc gtgcatcacc gtcgagagcc ggtgcgcgat catcagcgtg
      661 gtgcggccca ccgcgatgcg gtcgagctcg gcctggatcg cgcgttcgga cttggagtcc
      721 agcgccgagg tcgcctcgtc gaacagcagg atcgccgggt tcttgagcag ggcgcgcgcg
      781 atcgccacgc gctgcttctc gccccccgaa agcttcagcc cgcgctcgcc gacctcgggg
      841 tcgtagccgt cgggcagcgc ggcgatcagg tcgtggatgt gggccgcgcg cgccgccgcc
      901 tccacttccg cgcggctcgc ctccggccgt ccgtactgga tgttgtagta gatcgtgtcg
      961 ttgaacagca ccgtgtcctg cggaacgatc gcgatcgcgc cgcgcaccgt ggcctgggtg
     1021 tagtcgcgga tgtcgcgcgg caggcccacg tcgtcggtga tggcgatgcg cccgtcgtcg
     1081 acgtcgtaga agcggtacag caggcgcgcc agcgtggact tgccggagcc ggaatgaccg
     1141 accacggcga cggtctggcc cggctcgatg gcgaagctca cgtcctgcag gatcggccgg
     1201 cgcgggtcgt aggcgaagga gaccccttcg aacgccaccc gcggccggtg cgtgcgcagc
     1261 ggcagcgcgc ctacgcggtc ctgcacgtcc tggcgctcgt cgagcaggcc gaacaggcgc
     1321 tcgaggttgg tgaacgccgc cttgacctcg cggtacatca tgccgagcag gttgagcggc
     1381 gcggccagct gcagcaggta ggcgttgacc agcaccaggt cgccgacggt catgcgcccg
     1441 gcgaccaccc cggccgccgc gtcccacatc atcgcggtca cgccgatcgc cacgacggtg
     1501 gtctggccga ggttgagcac ggcgagcgtc ttgcgcgcct
//
LOCUS       DATIQC010000228         3953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_226591, whole genome shotgun sequence.
ACCESSION   DATIQC010000228 DATIQC010000000
VERSION     DATIQC010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3953
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_226591"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..660
                     /locus_tag="VLM17_04815"
     CDS             <1..660
                     /locus_tag="VLM17_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008433964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSR64911.1"
                     /translation="LERHAEFARAASDRGDALAGELRIGTSNTVGNYRVGELLGAFVQ
                     AHPQVAVRLRVANTEAIANAVLEHALDVGCVEGPVPHPDLEPRPWRDDALVLCAPPAH
                     PLAKRRGLKPEDFRDARWVLREPGSATRAASEQVLAQLPPAAGRLELSQAEAIKQAVV
                     AGLGIAVLPAVAVRDAAAAGRLAVLRTPFLRPFLQRRLSLLLHRRKYHGALLEAFLRS
                     L"
     gene            726..1976
                     /gene="glyA"
                     /locus_tag="VLM17_04820"
     CDS             726..1976
                     /gene="glyA"
                     /locus_tag="VLM17_04820"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011260263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HSR64912.1"
                     /translation="MFPRNARIEGYDPELAQAIADEARRQEDHVELIASENYASPRVM
                     EAQGSVLTNKYAEGYPGKRYYGGCEYVDVAERLAIERCKQLFGADYANVQPHSGSQAN
                     QAVYLALLNPGDTILGMSLAHGGHLTHGAKVNISGKLFHAVQYGVNDQGLIDYDEVER
                     LALEHKPKMVVAGFSAYSQKIDWARFRAIANKVGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTSTTHKTLRGPRGGIIVAKANEEIEKKLQSIVFPGIQGGPLMHVIAAKAVAFK
                     EALEPDFKDYQAQVVKNAQAMAKAIIARGYKIVSGGTENHLMLVDMIGKGITGKDAEA
                     ALGRAHITVNKNAVPNDPQKPFVTSGLRLGTPAVTTRGYKEADCVALANWICDVLDAP
                     DDEAVIAGVRENVTRQCAAFPVYE"
     gene            2004..2525
                     /gene="nrdR"
                     /locus_tag="VLM17_04825"
     CDS             2004..2525
                     /gene="nrdR"
                     /locus_tag="VLM17_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HSR64913.1"
                     /translation="MHCPFCQHVDTRVIDSRVSDDGATIRRRRECAACGERFSTLETI
                     ELKLPAIIKGDGRREQFDARKLRQGFDRALQKRPVSEEQIEAAVRAVVHQLRMTTERE
                     VASRRVGEFVMAELRKLDHVGYVRFASVYRSFEDVADFREELDRLERDAPGEGQLPLL
                     EGEAAEAARERRR"
     gene            2625..3704
                     /gene="ribD"
                     /locus_tag="VLM17_04830"
     CDS             2625..3704
                     /gene="ribD"
                     /locus_tag="VLM17_04830"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009576488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HSR64914.1"
                     /translation="MMARALRLAERGTFTTKPNPMVGCVIARDGEVLGEGWHQRAGGP
                     HAEVAALAAAGARARGATAYVTLEPCAHTGRTGPCADALVDAGIARVVGAMRDPNPEV
                     DGEGYACLRAAGIAVDVGLMEGAARELNRGFLSRIERGRPWLRVKLATSFDGRSALAS
                     GESKWISSEPAREDVQRWRARSGAILTGAGTVLMDDPQLTVRFSDDMPEHERAFVPPL
                     RVVLDPGLATIGRGRVREGDAPTLYIHAPDARVPRNFDAQHAWVPVREGRFDLPAVLR
                     LLAEREVNEVQVEAGATLAGAILAQGLVDELLLYVAPVMLGERARPLFEGLQIDAMTE
                     RLKLRLVDTRRIGEDIRVLLRPAAA"
BASE COUNT          597 a         1418 c         1441 g          497 t
ORIGIN      
        1 ctggagcgcc acgccgagtt cgcccgcgcc gccagcgacc gcggcgacgc gctcgccggg
       61 gaactgcgca tcggcaccag caacacggtc ggcaactacc gggtcggcga actgctcggc
      121 gccttcgtgc aggcgcaccc gcaggtggcg gtccggctgc gcgtggccaa caccgaggcg
      181 atcgccaacg cggtgctcga gcacgcgctg gacgtgggct gcgtcgaagg cccggtgccg
      241 catcccgacc tcgagccgcg tccgtggcgc gacgacgcgc tggtgctgtg cgccccgccg
      301 gcgcatccgc tggcgaagcg ccgcggcctc aagccggagg acttccgcga cgcccgctgg
      361 gtgctgcgcg agcccggttc ggccacgcgc gcggccagcg agcaggtgct ggcgcagctg
      421 ccgccggcgg cgggtcgact ggagctgagc caggccgagg cgatcaagca ggcggtggtc
      481 gcgggcctcg gcatcgccgt gctgcccgcg gtggcggtgc gcgacgccgc cgccgcgggc
      541 cggctggcgg tgctgcgcac gccgttcctg cgcccgttcc tgcagcgccg gctgtcgctg
      601 ctgctgcacc ggcgcaagta ccacggcgcg ctgctggagg ccttcctgcg ctccctgtag
      661 ggccaggccg cggcgggccg gcgggctaca atccgcggac cccacgacag ccccacggcc
      721 cctccatgtt cccgcgcaac gcccgcatcg aaggctacga ccccgaactc gcccaggcca
      781 tcgccgacga ggcccgccgc caggaggacc acgtcgagct gatcgcctcg gagaactacg
      841 ccagcccgcg ggtgatggaa gcgcagggca gcgtgctgac caacaagtac gccgaaggct
      901 atccgggcaa gcgctactac ggcggctgcg aatacgtgga cgtcgccgag cggctggcga
      961 tcgagcgctg caagcagttg ttcggcgcgg actatgccaa cgtgcagccg cattcgggct
     1021 cgcaggccaa ccaggcggtg tacctcgcgc tgctgaaccc gggcgacacc atcctcggca
     1081 tgtccctcgc gcacggcggc cacctcaccc acggcgccaa ggtcaacatc agcggcaagc
     1141 tcttccacgc cgtgcagtac ggcgtcaacg accagggcct gatcgactac gacgaggtcg
     1201 agcggctcgc tctcgaacac aagccgaaga tggtcgtcgc tggcttctcc gcctactcgc
     1261 agaagatcga ctgggcgcgc ttccgcgcga tcgccaacaa ggtcggcgcg tacctgttcg
     1321 tcgacatggc gcacgtcgcc ggcctcgtcg ccgcgggcgt gtacccgaat ccggtgccgc
     1381 acgcgcatgt cgtcacctcg accacgcaca agaccctgcg cggcccgcgc ggcggcatca
     1441 tcgtggcgaa agcgaacgaa gagatcgaga agaagctgca gtcgatcgtg ttccccggca
     1501 tccagggcgg cccactgatg cacgtcatcg cggcgaaggc ggtcgcgttc aaggaagcgc
     1561 tggaacccga cttcaaggac taccaggcgc aggtggtgaa gaacgcgcag gcgatggcga
     1621 aagcgatcat cgcgcgcggc tacaagatcg tctccggcgg caccgagaac cacctgatgc
     1681 tggtcgacat gatcggaaaa ggcatcaccg gcaaggacgc ggaagccgcg ctcggccgcg
     1741 cccacatcac cgtgaacaag aacgcggttc cgaacgatcc gcagaagccc ttcgtcacct
     1801 cgggcctgcg cctgggcacg cccgcggtca ccacccgggg ctacaaggag gcggactgcg
     1861 tggcgctcgc caactggatc tgcgacgtgc tcgacgcgcc ggacgacgag gcggtgatcg
     1921 ccggcgtgcg cgagaacgtg accaggcagt gcgccgcatt cccggtctac gaatgacgcc
     1981 ctaggacgcc cggcgaggcc tggatgcact gccccttctg ccagcacgtc gacacccgcg
     2041 tcatcgattc gcgggtctcc gacgacggcg cgacgatccg ccgccggcgc gagtgcgcgg
     2101 cctgcggcga gcgcttctcg acgctggaga ccatcgaact gaagctcccg gcgatcatca
     2161 agggcgacgg ccgccgcgag cagttcgacg cgcgcaagct gcgccagggc ttcgaccgcg
     2221 cgctgcagaa gcggccggtg tcggaggagc agatcgaggc ggcggtgcgc gcggtcgtgc
     2281 accagctgcg catgaccacc gagcgcgagg tcgcctcgcg ccgcgtcggc gagttcgtga
     2341 tggcggagct gcgcaagctc gaccacgtcg gctacgtgcg cttcgcctcg gtttaccgtt
     2401 cgttcgagga cgtggccgac ttccgcgagg aactcgaccg gctcgagcgt gacgcgcccg
     2461 gcgaaggcca gctgccgctg ctggaaggcg aggcggccga ggcggcgcgc gagcgccggc
     2521 gctagcgccg cagccgcgcg tcgcgacggc gccgcgcgaa ggaggaagcc gtggacagtc
     2581 ccgaaccgca gacgccgccc gccttcagcg cgatcgacca cgccatgatg gcgcgcgcgc
     2641 tgcgcctggc cgaacgcggc accttcacca ccaagcccaa cccgatggtc ggctgcgtga
     2701 tcgcgcgcga cggcgaggtc ctgggcgagg gctggcacca gcgggccggc ggcccgcacg
     2761 ccgaggtcgc cgcgctggcg gcggccggcg cgcgcgcgcg cggcgccacc gcctacgtca
     2821 ccctcgagcc ctgcgcccac acgggacgca ccgggccgtg cgcggatgcg ctggtcgatg
     2881 ccggcatcgc gcgcgtggtc ggggcgatgc gcgatcccaa tcccgaggtc gacggcgagg
     2941 gctatgcgtg cctgcgcgcg gccgggatcg cggtcgacgt cggcctgatg gagggcgcgg
     3001 cgcgcgagct caaccgcggc ttcctctcgc gcatcgagcg cgggcgcccc tggttgcggg
     3061 tcaagctggc caccagcttc gacggtcgca gcgcgctggc gagcggcgag tcgaagtgga
     3121 tcagcagcga gcctgcgcgc gaggacgtgc agcgctggcg cgcgcgttcg ggcgccatcc
     3181 tgaccggcgc cggcaccgtg ctgatggacg acccgcaact gacggtgcgc ttctccgacg
     3241 acatgcccga gcacgaacgt gcgttcgtgc cgccgttgcg ggtggtgctc gacccgggcc
     3301 tggcgacgat cggtcgcggc cgggtgcgcg agggcgacgc gccgacgctg tacatccatg
     3361 cgcccgacgc gcgcgtgccg cgcaacttcg acgcgcagca cgcgtgggtg ccggtgcgcg
     3421 agggccgctt cgacctgccc gcggtgctgc gcctgctggc cgaacgcgag gtcaacgagg
     3481 tgcaggtgga agcgggcgcg acgctggccg gcgccatcct cgcccagggg ctggtcgacg
     3541 agctgctgct gtacgtggcg ccggtgatgc tgggcgagcg cgcgcggccg ctgtttgagg
     3601 gcctgcagat cgacgcgatg accgagcggc tgaagctgcg gctggtggac acgcggcgca
     3661 tcggcgagga catccgcgtg ctgctgaggc cggcagcggc ctgatccacg cggccgacca
     3721 tgcaatgcgt gccggcgcgc gcacggagcc ggcgcccgga tccgcaatac cgaggacagg
     3781 gatggcgacc atcgccttca aggaccactt ttccgcggtc gccgccgact acgccagtgc
     3841 gcggccggaa tatcccgacg cgctgtacgc atggatcgca ggggccgcgc cggcactgcg
     3901 cttggcctgg gaagccggct gcggcagcgg ccaggcgacg cgcgggctcg cgg
//
LOCUS       DATIQC010000229         2390 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_85797, whole genome shotgun sequence.
ACCESSION   DATIQC010000229 DATIQC010000000
VERSION     DATIQC010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85797"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1878)
                     /locus_tag="VLM17_04835"
     CDS             complement(<1..1878)
                     /locus_tag="VLM17_04835"
                     /inference="COORDINATES: protein motif:HMM:NF024972.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR64915.1"
                     /translation="MASRRIAAFPDRGSFLAYASSAPLRRGTFTAYPVQISEAHALRA
                     IAEGGMVVASPDGRPIRLQYTGRIQHPDGNWTWVGRPAGSPAGAEAMLTFGDKAVFGT
                     IPTSSGALQVTTLGGRTWLLQPNPLAAAADPVPTQADALAPMPRGHATRPVAAAQPRA
                     IAAQALAPQAATPSATATVDVVLGYTNGFATRLGGQSQAVTRLQYLVDLANQAYVDSQ
                     VAGRIRMVAAVQVNYADNTSNQATLFELSGLSCSADNSSPLRTPDTGESCTAVAVPDA
                     LKPLVSARDRYGADLVSLVRNYTQPENGSCGVGWLLGANQVGITQDDAQFGFSVVSDS
                     DGTTFPSQSTTCREEYLAHELGHNMGLQHDRETAAGTDDTNADGNLLDPEEFGAYPYS
                     FGYSSTAGNFYTIMSLRRSGQVGYRVFSNPGITLCGGLPCGETDKEDNARALNQTMAI
                     VASFRAAALGRGVWFSGDFNGDGQSDVLWRNLSTGGNVVWRSALAPMQLPLTPVADQA
                     WQVAAAADFDGDGKADILWRNGTTGADQIWKAASSANKVLLPTVALTWTVAGTGDFNG
                     DGKGDILWRNTTTGANVLWLAGSPKTQVALTTVSDLAWTPVGTGDFNADGKDDILWRN
                     AN"
     gene            complement(2154..>2390)
                     /locus_tag="VLM17_04840"
     CDS             complement(2154..>2390)
                     /locus_tag="VLM17_04840"
                     /inference="COORDINATES: protein motif:HMM:NF013959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64916.1"
                     /translation="TGGDVVWKSADSRSQQVLATVSDLNWKIAVVGDFNGDGQADILW
                     RNGSTGANVIWRSANSQTQQALTAVTDLNWHIVD"
BASE COUNT          327 a          805 c          874 g          384 t
ORIGIN      
        1 gttggcgttg cgccacagga tgtcgtcctt gccatcggcg ttgaagtcgc cggtgcccac
       61 cggtgtccag gcgaggtcgg agacggtggt cagcgccacc tgcgtcttcg ggctgcccgc
      121 cagccacagc acgttcgcac cggtggtggt gttgcgccac aggatgtcgc ccttgccgtc
      181 gccgttgaag tcgccggtgc cggccaccgt ccacgtcagc gcgaccgtcg gcaggagcac
      241 cttgttcgcc gagctggccg ccttccagat ctggtcggca ccggtggtcc cgttgcgcca
      301 caggatgtcg gccttgccgt cgccgtcgaa gtcggcggcc gccgccacct gccaggcctg
      361 gtccgcgacc ggcgtcagcg gcaactgcat cggcgcgagc gccgaacgcc acaccacgtt
      421 gccacccgtc gacaggttgc gccacagcac gtcggactgg ccgtcgccgt tgaagtcgcc
      481 gctgaaccag acgccgcggc cgagcgcggc ggcccggaag gacgcgacga tcgccatggt
      541 ctggttgagg gcgcgcgcat tgtcctcctt gtccgtctcg ccgcacggca ggccaccgca
      601 gagcgtgatg ccggggttgg agaacacgcg gtagccgacc tggccggagc ggcgcagcga
      661 catgatcgtg tagaagttgc cggcggtgct gctgtagccg aacgaatacg ggtaggcgcc
      721 gaactcttcc ggatcgagca ggttgccgtc cgcgttcgta tcgtcggtgc cggccgcggt
      781 ctcgcgatcg tgctggagcc ccatgttgtg gccgagttcg tgggcgaggt attcctcgcg
      841 gcacgtcgtg ctctggctcg ggaaggtggt gccgtcgctg tcgctgacca cggagaagcc
      901 gaactgcgcg tcatcctgcg tgatcccgac ctggttggcg ccgagcagcc agccgacgcc
      961 gcagctgccg ttttccggct gggtgtagtt gcgcaccagt gacaccaggt ccgcgccgta
     1021 gcggtcgcgt gcgctgacca gcggcttgag cgcatcgggc acggcgaccg ccgtgcagga
     1081 ctcgccggta tcgggcgtgc gcagcggcga gctgttgtcg gccgagcacg acaggccgga
     1141 cagttcgaac agcgtcgcct ggttggaggt gttgtcggcg tagttcacct gcaccgccgc
     1201 caccatgcgg atgcggcccg cgacctggct gtcgacgtac gcctggttgg cgaggtcgac
     1261 gaggtactgc aggcgggtca ccgcctgcga ctggccgccc aggcgggtcg cgaagccgtt
     1321 ggtgtagccg agcaccacgt cgaccgtcgc ggtcgccgat ggggtggccg cttgcggggc
     1381 cagcgcctgc gccgcgatcg cacgcggctg ggcggcggcc accggccgcg tcgcatggcc
     1441 gcgcggcatc ggcgccaggg catcggcctg ggtcggcacc ggatcggccg cggccgcgag
     1501 cggattgggc tgcagcagcc aggtcctgcc gcccagggtg gtgacctgca gcgcaccgct
     1561 gctcgtcggg atggtgccga acacggcctt gtcgccgaag gtcagcatgg cttcggcgcc
     1621 ggccgggctg ccggccgggc gaccgaccca cgtccagttg ccgtccggat gctggatgcg
     1681 gccggtgtac tgcagccgga tcgggcggcc gtcgggagac gcgaccacca ttccgccttc
     1741 cgcgatcgcg cgcagcgcgt gggcttcgct gatctgcacg ggataggcgg tgaaggtgcc
     1801 acgccgcagc ggcgcgctgg atgcgtacgc gaggaagctg ccgcggtcgg ggaatgcggc
     1861 gatccggcgt gacgccaccg tgtacgccga ctgcggggac gaagacgaac gtgaagcgtg
     1921 ggtgagggag gatgcgaggt gcgcgctgga cccgccctga tcggcgcagc cggcagccag
     1981 gctgccgagc gcagcaaccg caagcatgta tttacgcatg gtggggaccc ctgatggtgg
     2041 gtgcgccacc ttcatcccga aggtggctcc cacctgaata ccggggcccc ggtcacggag
     2101 gcgtgacgga tttgcggcct tgcctgcgcg tcagggcgcg cgcgttcgcg cgctcaatcg
     2161 acgatgtgcc agttcaggtc cgtcaccgcg gtcaacgcct gctgggtctg cgaattcgcg
     2221 gaacgccaga tgacgttggc gcccgtgctg ccgttgcgcc acaggatgtc ggcctgccca
     2281 tcgccgttga aatcgccgac caccgcgatc ttccagttca ggtcgctcac cgtggccagc
     2341 acctgctggg acctggaatc ggcggacttc cacaccacgt cgccgccggt
//
LOCUS       DATIQC010000230         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_191932, whole genome shotgun sequence.
ACCESSION   DATIQC010000230 DATIQC010000000
VERSION     DATIQC010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_191932"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..725
                     /locus_tag="VLM17_04845"
     CDS             102..725
                     /locus_tag="VLM17_04845"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HSR64917.1"
                     /translation="MSALLDDVRLRAALHPLAAAPAVPCWNLAELDGLLPDAPPVEAA
                     VLVGLVPRVAGTQVLLTRRTEDLRHHAGQVSFPGGRVEPGDRDAVAAALRETEEEVGI
                     ATSLLSPLGFLDPLATVSGFRVLPVVALVDAAYRPRPDPREVAEVFEVPLARLLDPAS
                     LAERHVDWRGRPRVVLEFVNPDNPQRRIWGATASILHNLRQRMERAR"
     gene            722..1564
                     /locus_tag="VLM17_04850"
     CDS             722..1564
                     /locus_tag="VLM17_04850"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HSR64918.1"
                     /translation="MSGWTTLVQAETLSIALGRVDLAVLDCRFSLAAPGAGEGAYLEG
                     HIPGAYYAHLDRDLSDHRKTGAGRHPWPEAADFTVRLGAWGVTPQTQVVAYDDGDGAH
                     AARLWFLLRMLGHEKVAVLDGGWKRWTALGLAVDSHVPVPAHARYRGEFDASRLLDAD
                     AVQAGLAAGDLLIDARGAERFRGESEPIDRVAGHVPGAVNRPYAQNLVDGHFKPPVQL
                     AEEFRALLGAHAPADTMVMCGSGVTACHHLLAMERAGLHGAKLFTGSWSGWISDPARP
                     VARD"
     gene            complement(1650..2408)
                     /locus_tag="VLM17_04855"
     CDS             complement(1650..2408)
                     /locus_tag="VLM17_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HSR64919.1"
                     /translation="MALVDRIVHDSVHELRLARPPVNALDPALCGDLERAVDEAIAAG
                     ARGLVLAGGPKVFSAGLDVPHLVSLGADRAALTAAWEAFFRAARAIARAPVPVAAAIA
                     GHAPAGGCVLALCCDYRVMAEGPSRIGLNETQVGLVAPEGIQQLLRRVVGGHRAERLL
                     VAGELVDAERALALGLVDELADVDGVPVRARAWLEDLLALPRQPMLETRALARAELVA
                     ALEPERIRLDHFIAGWYSADTQAALRALMAKLGK"
     gene            2447..>2679
                     /locus_tag="VLM17_04860"
     CDS             2447..>2679
                     /locus_tag="VLM17_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64920.1"
                     /translation="MNASARAVAAVFVAATLCVPAACTRDGGAPVQAQAGRAAADAQA
                     CLPRVRGGWIRLVPGGGMPMDAGYATIDNPCDAP"
BASE COUNT          342 a         1006 c          984 g          347 t
ORIGIN      
        1 acggtcgacg aaatcgcggc ctggtcccga ctgtcggatg ccgcacgcct gcacctgatg
       61 gaaacgctgc tgccgctgcg cgagcaggcg accggtcggt catgagcgcc ctcctcgacg
      121 acgtccgcct gcgcgccgcc ctgcatccgc tggcggcagc accggccgtt ccgtgctgga
      181 acctcgccga gctcgacggc ctgctgcccg atgcgccgcc ggtggaggcg gcggtgctgg
      241 tcggcctggt cccgcgcgtg gccggcaccc aggtcctgtt gacccgccgc accgaggacc
      301 tgcgccacca cgccggccag gtcagcttcc cgggaggccg cgtcgaaccc ggcgaccgcg
      361 atgccgttgc cgccgcgctg cgcgaaaccg aggaggaagt cggcatcgcg acctccctcc
      421 tgtcgccgct cggcttcctc gatccgctgg cgacggtcag cggcttccgc gtgctgccgg
      481 tggtcgccct ggtggatgcc gcctaccggc cccggcccga tccgcgcgag gtcgccgagg
      541 tgttcgaagt gccgctggcc cggctgctcg atcccgcgag cctcgccgag cgccacgtcg
      601 actggcgcgg acggccgcgc gtggtgctgg aattcgtcaa tccggacaat ccgcaacgcc
      661 ggatctgggg cgcgaccgcc tcgatcctgc acaacctcag gcaacggatg gagcgcgcgc
      721 gatgagcggt tggaccacgc tggtgcaggc cgaaaccctt tcgatcgcgc tgggtcgcgt
      781 cgaccttgcg gtcctcgact gccgtttttc gctggccgcg cccggcgccg gcgagggcgc
      841 ctacctcgag ggccacatcc ccggggcgta ctacgcccac ctcgaccgcg acctgtccga
      901 ccaccgcaag accggcgccg ggcgccatcc ctggcccgag gccgccgatt tcaccgtgcg
      961 cctgggcgcc tggggcgtca ccccgcagac gcaggtcgtc gcctacgacg acggcgacgg
     1021 tgcgcacgcg gcgcggctgt ggttcctgct gcgcatgctc ggccacgaga aggtcgcggt
     1081 gctcgatggt ggatggaagc gctggaccgc gctcggcctg gcggtcgaca gccacgtgcc
     1141 ggtgccggcc cacgcgcgct atcgcggcga gttcgacgcc tcgcgcctgc tcgacgcgga
     1201 cgccgtgcag gcgggtctcg ccgccggcga cctgctcatc gacgcgcgcg gcgcggagcg
     1261 cttccgcggc gagagcgaac ccatcgaccg cgtggccggc cacgtgcccg gcgcggtcaa
     1321 ccgtccgtat gcgcagaacc tcgtcgacgg ccacttcaag ccgccggtgc agctggcgga
     1381 ggaattccgc gcgttgctcg gcgcgcatgc gccggcggac acgatggtga tgtgcggcag
     1441 cggcgtcacc gcctgccacc acctgctggc catggaacgc gcgggcctgc acggcgccaa
     1501 gctgttcacg ggctcatggt ccggctggat cagcgatccg gcgcgacccg tcgcgcgcga
     1561 ctgatccacc gggcgctgct cggccgcgct ccgcgcccgg acgcgcccgc ccgcgcaacg
     1621 ggcgcgtcga ggtccggctg cagcagcggc tacttgccga gcttcgccat cagcgcgcgc
     1681 agcgcggcct gggtgtcggc cgaataccag cccgcgatga agtggtcgag gcggatgcgc
     1741 tcgggttcga gcgcggcgac gagttcggcg cgggcgaggg cgcgcgtttc cagcatcggc
     1801 tggcgcggca gggcgagcag gtcctcgagc caggcgcggg cgcgaacggg gacgccgtcg
     1861 acgtcggcga gttcgtcgac cagcccgagc gcgagcgcgc gttcggcatc gaccagctcc
     1921 cccgcgacca gcaggcgctc ggcgcggtgc ccgcccacca cccgccgcag cagttgctgg
     1981 atgccttccg gcgcgaccag cccgacctgc gtctcgttga ggccgatgcg ggacgggcct
     2041 tcggccatca cccggtagtc gcagcacagc gcgagcacgc atccgccggc gggcgcgtgg
     2101 cccgcgatgg cggcggcgac cggcaccggt gcgcgggcga tcgcgcgcgc cgcgcggaaa
     2161 aaggcttccc atgcggcagt cagcgccgcg cgatccgcgc caagcgacac caggtgcggc
     2221 acgtcgagcc cggcggagaa caccttcggg ccgccggcca gcaccaagcc tcgcgcgccc
     2281 gcggcgatcg cctcatcgac ggcgcgttcg aggtcgccgc acagcgcggg atcgagcgcg
     2341 ttgaccggcg gccgcgccag ccgcagctcg tggacggaat cgtggacgat gcggtcgacg
     2401 agggccatgc gggtgctccg gaagaggcag cggctatcat aggcgcatga acgcaagcgc
     2461 ccgtgccgtc gccgccgtct tcgtcgccgc gacgctgtgc gtgcctgctg cgtgcacgcg
     2521 cgacgggggc gcgcccgtgc aggcacaggc cgggcgcgcc gcggcggacg cgcaggcctg
     2581 cctgccgcgc gtgcggggcg gttggatccg gctggtaccg ggtggcggca tgccgatgga
     2641 cgccggctac gcgacgatcg acaacccctg cgacgcgcc
//
LOCUS       DATIQC010000231         4541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_545300, whole genome shotgun sequence.
ACCESSION   DATIQC010000231 DATIQC010000000
VERSION     DATIQC010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4541
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545300"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..418)
                     /locus_tag="VLM17_04865"
     CDS             complement(<1..418)
                     /locus_tag="VLM17_04865"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HSR64921.1"
                     /translation="MPRADFYLIAKPRFRDQPLRLVCELARKACDAGQWTLVLARDDA
                     QAEALDDLLWDMGDDVFIPHQIAGADVEEDEAQVLIAPPAVDAPLRPLVINLRDAPVD
                     GGFERVLEVVPADASARGPLRERWKQYQARGLELNKH"
     gene            complement(495..1988)
                     /locus_tag="VLM17_04870"
     CDS             complement(495..1988)
                     /locus_tag="VLM17_04870"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003475923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HSR64922.1"
                     /translation="MSLEFTLNRAAPASAAVDCVVVGAFADNSLTPAAQALDAASGGR
                     LAALAARGDLSGKTGRTALLHDLPGVAAPRVLVIGLGERDKFGVAQYLKAVGDAARAL
                     KTGPVRNALFTLSELPVKERDAAWAIRAAAIAAAHACYSYTATLGAKNKKREETGLKS
                     LAIHAFNSEGNDAQALAQGQAIAAGVAFARELGNLPPNICNPAYLAQQAQEFAGRQAN
                     TECEVLDREQMRELGMGSLLAVSQGSANPPRLIVLKYRNGGDAKPYVLVGKGITFDTG
                     GINLKTQGGIEEMKYDMCGAATVMGTFVSAVGMQLPINLVVVVPAVENMPDGNSYRPS
                     DVLTSMSGKTIEVGNTDAEGRLILCDALTYAQRFEPQALLDVATLTGACVVALGKYAT
                     GLMSKHDDLSAELLAAGEATFDRAWRLPLWDEYQSLLDSTFADVYNIGGRWAGAITAG
                     CFLARFTEGQRWAHLDIAGVANDDGKRGMATGRPVGMLSQWLLDRAG"
     gene            2139..3242
                     /gene="lptF"
                     /locus_tag="VLM17_04875"
     CDS             2139..3242
                     /gene="lptF"
                     /locus_tag="VLM17_04875"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HSR64923.1"
                     /translation="MPKPVTKLDRYLFGEFAQATFAAVVVLLMVSFGGVFADVLGDVA
                     RGRVPPAMMLSQLGLQLIRYLPLVLPLALMLGVLLAVGRLYRDAEMPVLTSIGVGPRR
                     LLRPLLLLVLPLVAVIALCSLWWSPWAKHTSQEMLREANHSLLVAGLEPGRFTELPGH
                     GGVVYVGGMSNDGRQLQRIFVYRQKGDRLDVTTSRSGHLSLDGDQRYLTMDDGFRVEG
                     PLETGRDYRLMRYASNDLHLPDNADSEDLHDPQAMSTPALLRDPRREAGAQLHYRIAP
                     PLLALAFALLAVPLARSPPRQPRYGRILMGFLAYLFGTNMVLLGTDWLGGGKLPMYAG
                     LWWLLAPLLLVALWMYFADGRMRRPRAPGARRA"
     gene            3239..4342
                     /gene="lptG"
                     /locus_tag="VLM17_04880"
     CDS             3239..4342
                     /gene="lptG"
                     /locus_tag="VLM17_04880"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HSR64924.1"
                     /translation="MKPFPKLHDLYVGRVLLGTVLVTWAVLVGMDFVVSGLLGEIGDI
                     GKGDYTFATALVDVIYTIPRRAYQLFPTAAVIGALMGLGQLAASSELTALRALGLSRR
                     RLGLAVALALSVLTALMVVNGETLGPWGQRKAESLKASSKSKDMIVAQYSGLWAREGN
                     TFLNAQTGEERGEGSRHWLALRDVRLYEFDASGRLESIARAASAEHHPGGWLLHNVRR
                     TWFDQRSVTQTEAMEEHWASQLDDAALAASVMAPRYMPAADLRSSIDYRHRNDLDAGV
                     YEEAYWGRWFYPVNVLALCLAAIPFAFGSLRSGGLGRRLFIGIVFALGFWLLQTQVVR
                     LAGVYKFDYRIAYLVPSAVMLAVSAVLFRRRSG"
BASE COUNT          574 a         1595 c         1683 g          689 t
ORIGIN      
        1 cgtgcttgtt caactccaag ccgcgggcct ggtactgctt ccagcgctcg cgcagcggcc
       61 cgcgcgccga ggcatccgcg ggtaccacct cgagcacgcg ctcgaagcca ccatcgaccg
      121 gcgcgtcgcg caggttgatc accagcgggc gcagcggcgc gtcgaccgcg ggcggggcga
      181 tcagcacctg cgcctcgtcc tcctcgacgt ccgcgccggc gatctggtgc gggatgaaga
      241 cgtcgtcgcc catgtcccag agcaggtcgt cgagcgcttc ggcctgcgcg tcgtcgcgcg
      301 ccagcaccag cgtccactgg ccggcgtcgc aggccttgcg cgcgagttcg cagaccagcc
      361 gcagcggctg gtcgcggaag cgcggcttgg cgatcaggta gaagtcggcg cgtggcatgg
      421 aagcgacggg gcgtcggtgg ccgctggtgc gtgcagggcc gccgccgggg acggacggcg
      481 ggaaccccgg cgcatcagcc ggcccggtcc agcagccact gcgacagcat gcccaccggc
      541 cgcccggtcg ccatgccgcg cttgccgtcg tcgttggcga cgccggcgat gtccaggtgc
      601 gcccagcgct ggccttcggt gaagcgggcg aggaagcagc cggcggtgat cgcgccggcc
      661 cagcggccgc cgatgttgta gacgtcggcg aaggtcgaat cgagcagcga ctggtactcg
      721 tcccacagcg gcaggcgcca ggcgcggtcg aaggtggctt cgcctgcggc gagcagttcg
      781 gccgacaggt cgtcgtgctt gctcatcagg ccggtcgcgt acttgccgag cgcgaccacg
      841 caggcgccgg tcagcgtcgc cacgtcgagc agcgcctgcg gctcgaagcg ctgggcgtag
      901 gtgagcgcgt cgcacaggat caggcggcct tcggcgtcgg tgttgccgac ctcgatggtc
      961 ttgcccgaca tcgaggtgag cacgtcgctg ggacggtagc tgttgccgtc gggcatgttc
     1021 tcgaccgccg gcacgacgac gacgaggttg atcggcagct gcatgccgac cgcggacacg
     1081 aacgtgccca tcacggtcgc cgcgccgcac atgtcgtact tcatctcctc gatgccgccc
     1141 tgggtcttca ggttgatgcc gccggtatcg aaggtgatgc ccttgccgac cagcacgtac
     1201 ggcttggcgt cgccgccgtt gcggtacttg agcacgatca gccggggcgg gttggcggaa
     1261 ccctgcgaca ccgccagcag cgagcccatg ccgagctcgc gcatctgttc gcggtcgagc
     1321 acctcgcact cggtgttggc ctggcggccg gcgaattcct gcgcctgctg ggcgaggtag
     1381 gccgggttgc agatgttcgg cggcaggttg ccgagctcgc gcgcgaacgc gacgccggcg
     1441 gcgatcgcct ggccctgggc cagcgcctgc gcgtcgttgc cctcgctgtt gaaagcatgg
     1501 atggcgagcg acttgaggcc ggtttcctcg cgcttcttgt tcttggcgcc gagggtggcg
     1561 gtgtagctgt agcaggcgtg cgcggcggcg atcgcggcgg cgcggatggc ccaggccgcg
     1621 tcgcgctcct tcaccggcag ctcgctcagg gtgaacagcg cgttcctgac cggcccggtc
     1681 ttgagcgcgc gcgcggcgtc gccgacggcc ttgaggtact gcgcgacgcc gaacttgtcg
     1741 cgctcgccca ggccgatcac cagcacgcgc ggcgcggcca cgcccggcag gtcgtgcagc
     1801 agcgcggtcc ggccggtctt gccgctgagg tcgccgcgcg cggcgagggc ggcgaggcgg
     1861 ccgccgctgg cggcgtccag cgcctgcgcg gcgggcgtga ggctgttgtc ggcgaaggcg
     1921 cctaccacga cgcagtcgac ggcggcggag gcgggcgcgg cgcggttcag ggtgaattcg
     1981 aggctcatcg accaaggtcc gggggaaagg aaggcagcga gtccgtacaa tcggccggct
     2041 gtggcggcgc cgctgcggcg cgcgcctccc gcgcgatgcg ccatggccgg agtggccggg
     2101 cgaacggaag cccccgcagt ctaaagcaag gccgcccgat gccgaagccc gtcaccaagc
     2161 tcgaccgcta cctgttcggc gaattcgccc aggcgacctt cgccgcggtg gtcgtgctgc
     2221 tgatggtgag cttcggcggg gtgttcgccg acgtcctcgg cgatgtcgcc cgcggccggg
     2281 tgccgcccgc gatgatgctg tcccagctcg gcctgcagct gatccgctac ctgccgctgg
     2341 tgctgccgct ggccctgatg ctgggcgtgc tgctggcggt gggccggctg taccgcgacg
     2401 ccgagatgcc ggtgctgacc tcgatcgggg tcggcccgcg gcggctgctg cggccgctgc
     2461 tgctgctggt gctgccgctg gtggcggtga tcgcgctgtg ctcgctgtgg tggagcccgt
     2521 gggccaagca cacctcgcag gagatgctgc gcgaggccaa ccacagcctg ctggtcgccg
     2581 gcctcgagcc cggccgcttc accgagctgc cggggcacgg tggcgtggtc tacgtcggcg
     2641 gcatgtccaa cgacggccgc cagctgcaac gcatcttcgt ctaccggcag aagggcgacc
     2701 gcctcgacgt caccacctcg cgcagcggcc acctcagcct ggatggcgac cagcgctacc
     2761 tgacgatgga cgacgggttc cgcgtcgagg gcccgctgga aaccgggcgc gactaccgcc
     2821 tgatgcgcta cgccagcaac gacctgcacc tgccggacaa cgcagacagc gaggacctgc
     2881 acgatccgca ggcgatgtcg acgccggccc tgctgcgcga tccgcgccgc gaagccggcg
     2941 cgcaactgca ttaccgcatc gcgccgccgc tgctcgcgct cgccttcgcg ctgctcgccg
     3001 tgccgctggc gcgcagcccg ccgcggcagc cgcgctatgg ccgcatcctg atgggcttcc
     3061 tggcctacct gttcggcacc aacatggtgc tgctcggcac cgactggctc ggcggcggca
     3121 agctgccgat gtacgcgggc ctgtggtggc tgctcgcgcc gctgctgctg gtcgcgctgt
     3181 ggatgtattt cgccgacggc cgcatgcgcc ggccgcgcgc cccgggagcc cgtcgcgcat
     3241 gaagcccttt cccaagctgc acgacctcta cgtcggccgg gtgctgctcg gcacggtgct
     3301 ggtcacctgg gcggtgctgg tcggcatgga cttcgtggtc agcggcctgc tcggcgagat
     3361 cggcgacatc ggcaagggcg actacacctt cgccaccgcg ctggtcgacg tgatctacac
     3421 gattccgcgc cgcgcctacc agctgttccc gaccgcggcg gtgatcggcg cgctgatggg
     3481 gctcggccag ctggcggcga gttcggaact gaccgcgctg cgcgcgctcg gcctgtcgcg
     3541 ccggcggctc ggcctcgccg tcgcgctggc gctgtcggtg ctgaccgcgc tgatggtggt
     3601 gaacggcgag acgctggggc cgtggggcca gcgcaaggcc gagagcctga aggcctcgtc
     3661 caagtcgaag gacatgatcg tcgcccagta ctccggcctg tgggcgcgcg agggcaacac
     3721 cttcctcaac gcgcagaccg gcgaggagcg cggcgagggc agccgccact ggctggcgct
     3781 gcgcgacgtg cggctgtacg aattcgacgc cagcgggcgg ctggaatcga tcgcgcgcgc
     3841 ggccagcgcc gagcaccatc ccggcggctg gctgctgcac aacgtgcgcc gcacctggtt
     3901 cgaccagcgc tcggtcaccc agaccgaggc gatggaggag cactgggcgt cccagctcga
     3961 cgacgccgcg ctcgccgcga gcgtcatggc gccgcgctac atgccggcgg cggacctgcg
     4021 cagcagcatc gactaccgcc atcgcaacga cctcgatgcg ggcgtgtacg aggaggcgta
     4081 ctggggccgc tggttctatc cggtcaacgt gctggcgctg tgcctggcgg cgatcccgtt
     4141 cgccttcggc agcctgcgca gcggcggcct cggccgccgg ctgttcatcg gcatcgtgtt
     4201 cgcgctcggc ttctggctgc tgcagacgca ggtggtgcgc ctggccggcg tgtacaagtt
     4261 cgattaccgg atcgcctacc tggtcccgtc ggcggtgatg ctggcggtgt cggcggtgct
     4321 gttccggcgc cggtccgggt aacgggcgcg tcgtgccggt gcgcggctcc ggcacgacgc
     4381 gcccgcgacg acgccgggga cggcggccgc accgccggga catcagccgc gcgccttctc
     4441 ctcgagcacc atgcgagtcc ggctggcgcg gtcgtgccgc gccgccacgg agcggaaggc
     4501 ggcgacgagg tcggagcgcg ccgccgcgcg cggtgaccgt t
//
LOCUS       DATIQC010000232         1901 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_580541, whole genome shotgun sequence.
ACCESSION   DATIQC010000232 DATIQC010000000
VERSION     DATIQC010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580541"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..827)
                     /locus_tag="VLM17_04885"
     CDS             complement(96..827)
                     /locus_tag="VLM17_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014647734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4163 domain-containing protein"
                     /protein_id="HSR64925.1"
                     /translation="MPTDAPERAAAPAPLLQDVAEHDPRYLIGISYPAVANRYPGLAA
                     ELRRYAEGARAELMQAVAGLGQQKPPAPYDLTLSFIEVAETPQVVAIDADGSIYTGGA
                     HGNPLVACFAWLPQRNELLTATKLVPDTAAWRTLAAYIREQLHTALAQRVDADGLAGE
                     QRADVLKDGGRMIDEGTGPDPRNFGQFEPVLAADGRIAALRFVFPPYQVGPYADGRQT
                     VDVPADVLLPHVAPAYRTLFAGGQG"
     gene            complement(1095..1304)
                     /locus_tag="VLM17_04890"
     CDS             complement(1095..1304)
                     /locus_tag="VLM17_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009597534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HSR64926.1"
                     /translation="MSDRQTGTVKWFNDAKGFGFITPESGPDLFVHFRSIQGTGFKSL
                     QEGQKVSFKVVQGQKGLQADEVQAM"
     gene            complement(1610..>1901)
                     /locus_tag="VLM17_04895"
     CDS             complement(1610..>1901)
                     /locus_tag="VLM17_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="23S rRNA pseudouridine synthase F"
                     /protein_id="HSR64927.1"
                     /translation="VTDEFLRGMARGGVPVHGEPTLPCRTGKLGRFGFRITLVQGLNR
                     QVRLMAAHFGYRVKQLLRVRIGNVRLGHLKPGQWRNLTDAELRGLLPRHEDW"
BASE COUNT          273 a          638 c          714 g          276 t
ORIGIN      
        1 gtccgcctcg gcgaacagcg cctccacccg gcggcgcagc gggtgggccc cgctgtcccg
       61 gatgccgacc gctggccggg cgatggccat ccgcgttacc cctgccctcc ggcgaacagc
      121 gtgcggtagg cgggcgcgac atgcggcaac agcacgtccg cgggcacgtc gacggtctgc
      181 cggccgtccg cgtacgggcc gacctggtac ggcgggaaca cgaagcgcag cgcggcgatc
      241 cggccgtccg cggcgagcac gggttcgaac tggccgaagt tgcgcggatc cgggccggtg
      301 ccttcgtcga tcatgcggcc gccgtccttc agcacgtcgg cgcgctgctc gccggccagg
      361 ccatcggcgt cgacgcgctg ggccagcgcg gtgtgcagct gctcgcggat gtaggccgcc
      421 agcgtgcgcc aggcggcggt gtcgggcacc agcttcgtcg cggtgagcag ctcgttgcgc
      481 tgcggcagcc aggcgaagca ggcgaccagc ggattgccgt gcgcaccgcc ggtgtagatg
      541 ctgccgtcgg catcgatggc gaccacctgc ggagtttccg cgacctcgat gaagctcagc
      601 gtcaggtcgt acggcgccgg cggtttctgc tggccgaggc cggcgaccgc ctgcatgagt
      661 tcggcgcgcg ctccctcggc gtagcgcctg agctccgccg cgaggccggg atagcggttg
      721 gcgacggccg gatagctgat gccgatgagg tagcgcgggt catgctcggc cacgtcctgg
      781 agcagcggcg ccggcgcggc cgcgcgttcc ggcgcgtcgg tgggcaccgg ggcggatccg
      841 gcgcggggcg cggccgcgcg ccggcaggcg gcgagacaca ggatcaggct gacggacagc
      901 aggcaagcgg ccgcgaaggc cggacgacgc gacatggggt tcctttccca aggggatgcg
      961 cgcggtgaag atagccgcgg ggccgtgatg cctgaatgca cggcggcgac gcgggccgcg
     1021 gacaaagaaa aagcccggcc ggagccgggc tttttcgcga cacggcccgc cggagcgggg
     1081 cgtgtcaggc gtgattacat cgcctggact tcatcggcct gcaggccctt ctggccctgc
     1141 acgaccttga acgagacctt ctggccttcc tgcagcgact tgaagccggt gccctggatg
     1201 gaacggaagt gcacgaacag gtccgggccg gactccgggg tgatgaagcc gaagcccttg
     1261 gcgtcgttga accacttgac ggtaccggtc tgacgatcgg acatcttgtt actcctagtt
     1321 acgaggtttg ggtgtacacg gccgcctgcg gcgtgccgga ctgtcgagcc aggggtaacg
     1381 cgtaacgatg tagcggatcg catggatcta ccgcatcggg ccacgatgtc accgtgatcc
     1441 cgctgaaaca gtgcgcgcac cttaccctac tttggggcgc aagtgtgaat gcggggttgg
     1501 gggcatggaa ccggggacgg gacaggccgc ccgcctgccc tggcagccgc cccgccgacg
     1561 gtggagtgcc ggcttcgcgc gcggtgccag gcacgtgcca ggcggacgcc taccagtcct
     1621 cgtgccgcgg cagcagcccg cgcagttcgg cgtcggtcag gttgcgccac tggccgggct
     1681 tgaggtggcc cagcctgacg ttgccgatgc gcacccgcag cagctgcttg acgcggtacc
     1741 cgaagtgcgc cgccatcagc cggacctgcc ggttgagtcc ctgcacgagg gtgatgcgga
     1801 agccgaagcg gccgagcttc ccggtgcggc acggcagcgt cggctcgccg tgcaccggca
     1861 ccccgccgcg ggccatgccg cgcaggaatt cgtcggtgac c
//
LOCUS       DATIQC010000233         2678 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_438931, whole genome shotgun sequence.
ACCESSION   DATIQC010000233 DATIQC010000000
VERSION     DATIQC010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438931"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..876
                     /gene="fghA"
                     /locus_tag="VLM17_04900"
     CDS             43..876
                     /gene="fghA"
                     /locus_tag="VLM17_04900"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014648385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018738 - S-formylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0046292 - formaldehyde metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HSR64928.1"
                     /translation="MERVEQHACFGGRQEVWQHRSGALSCTMRFGIYLPPQAQARRCP
                     VLFWLSGLTCSEQNFITKAGAQRHAAEHGLILVAPDTSPRGPGVADAEGYDLGFGAGF
                     YVDATQAPWSAHYRMHDYVARELPSLVEAFFPATDARAISGHSMGGHGALVLALRNPG
                     RYRSVSAFAPIAAPSRVPWGEKAFTAYLGADRDAWREWDACELVTDARERLPILVDQG
                     EADEFLTTQLQPGRLQAACAKAGHPLTLRLQPGYDHSYYFIASFIGEHVAFHARALRI
                     A"
     gene            complement(910..2103)
                     /locus_tag="VLM17_04905"
     CDS             complement(910..2103)
                     /locus_tag="VLM17_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008434492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR64929.1"
                     /translation="MNRIALRMLLADRAKFLGLLFGIAFTSFLVTFAASYFCGFMTRG
                     FALVAENPAVDVWVMDPAVEAPEQTVNLPDSALARVRSVDGVAYAAPLVLGSAPARFP
                     DGRFQVFEVIGVDDATLQGVPSWPGGRRADLRASDAAVVDAGGTEDKLQTPALARDRW
                     PRDGAHLEAPTRQLAPGDDLLVNERLVRVLGVSATLPRFPPRPLLYVTVPNALRILPV
                     EAHSLTFVLVRARPGVGPGELARRIAARTGFRARAAADFRGDTVRWFLLNSEDVGDIA
                     AMLTLAMTMGFGVTGVMLYMFTLEHQPQYAVLRALGAPPRQLVRMVLVQAATCALVGT
                     GLGLGACSVAGALVGRIGYPFRMLWYAPFAGALGVLLVCIAAAALSLRPVLKLQPAVV
                     FAGGR"
     gene            complement(2100..>2678)
                     /locus_tag="VLM17_04910"
     CDS             complement(2100..>2678)
                     /locus_tag="VLM17_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HSR64930.1"
                     /translation="QPRHRLDYLLALHRLDGEAISREAISNARDDVRVAQAAIEAARA
                     HAAQLAVDLDRLQVRAPSAGRALQVNVRPGEFATEGAGVRPPVLLGDDERMFVRVDID
                     ENDAWRVRPGAEGRAFVRGDPRLSIPLRYEYVEPYVVPKTSLTGQATERTDVRVLQVV
                     YSFARDGLPVYLGQQMDVFVRAAPAAPHGGRR"
BASE COUNT          415 a         1005 c          918 g          340 t
ORIGIN      
        1 gaatcgatcc gcaccgtgat ccgctactga cgctcgcgca ggatggaacg ggtcgaacag
       61 cacgcctgct tcggcggccg ccaggaagtc tggcagcacc ggtccggcgc cctctcctgc
      121 acgatgcgct tcggcatcta cctgccgccg caggcgcagg cgcggcgctg cccggtgctg
      181 ttctggctgt cgggcctgac ctgcagcgag cagaacttca tcaccaaggc cggcgcccag
      241 cgccacgcgg ccgagcacgg gctgatcctg gtcgcgccgg acaccagccc gcgcggacct
      301 ggcgtcgccg atgccgaagg ctacgacctg ggcttcggcg ccggcttcta cgtcgacgcc
      361 acgcaggcgc cgtggagcgc ccattaccgc atgcacgact atgtcgcgcg cgagctgccg
      421 tcactggtgg aagcgttctt cccggcgacc gacgcgcggg cgatcagcgg ccattcgatg
      481 ggcggacacg gcgccctggt gctggcgctg cgcaatcccg ggcgctatcg cagcgtgtcg
      541 gcgttcgcgc cgatcgccgc gccctcgcgc gtgccatggg gcgagaaggc gttcaccgcc
      601 tatctcggcg ccgatcgcga cgcgtggcgc gagtgggatg cgtgcgaact cgtcaccgat
      661 gcacgggaac ggctgccgat cctggtcgac cagggcgaag ccgacgaatt cctgaccacc
      721 cagctacagc ccggacgcct gcaggcggcg tgcgcgaaag ccggccatcc actcacgttg
      781 cgcctgcagc cgggttacga ccacagctac tacttcatcg ccagcttcat cggcgagcac
      841 gtcgccttcc acgcgcgcgc gctgcgcatc gcctgatccg ccgccttcag aggaggcgtt
      901 ccagcgcttt caccgcccgc ccgcgaacac caccgcgggc tgcagcttca gcaccgggcg
      961 caggctcagc gcggcggcgg cgatgcagac cagcaacacg ccgagcgcgc cggcgaaggg
     1021 tgcgtaccag agcatgcgga acggatagcc gatccggccg acgagggcgc cggcgacgct
     1081 gcaggcgccc agccccaggc ccgttccgac aagcgcgcac gtcgcggcct gcacgagcac
     1141 catgcgcacc agctgtcgcg gtggcgcgcc caaggcgcgc agcaccgcgt actgcggctg
     1201 gtgctcgagc gtgaacatgt aaagcatcac cccggtcacg ccgaacccca tggtcatcgc
     1261 cagcgtcagc atcgccgcga tgtcgcccac atcctcggag ttgagcagga accagcgcac
     1321 ggtgtcgccg cggaagtccg cggccgcccg cgcgcgaaaa ccggtgcgcg ctgcgatgcg
     1381 gcgcgcaagc tcgcccggcc cgacccccgg tcgcgcgcgc accagcacga aggtcagcga
     1441 atgcgcctcg accggcagga tgcgcaacgc gttgggcacg gtgacgtaca gcagcgggcg
     1501 tggcggaaag cgcggcagcg tcgcggatac gcccagcacc cgcacgaggc gctcgttgac
     1561 cagcagatcg tcgcccggtg caagctggcg cgtaggcgcc tcgaggtgcg cgccgtcgcg
     1621 cggccagcgg tcgcgcgcca gagccggggt ctgcagtttg tcctcggtac ccccggcgtc
     1681 gacgaccgcc gcgtcgctcg cccgcaggtc ggctcgccgc ccgcccggcc acgacggcac
     1741 cccctgcagc gtcgcatcgt cgaccccgat cacctcgaac acctggaagc gcccgtccgg
     1801 gaaccgcgcc ggcgccgagc caagcaccag cggcgccgca taggcgacgc catcgacgct
     1861 gcggacgcgg gccagcgccg aatccggcag gttgacggtc tgttcgggcg cctcgaccgc
     1921 gggatccatc acccatacgt cgaccgccgg gttttccgcc accagcgcga agccacgcgt
     1981 catgaacccg cagaagtacg acgcggcgaa cgtcaccagg aacgaggtga acgcgatgcc
     2041 gaacagcagg ccgaggaatt tcgcgcggtc ggcgagcagc atccgcagcg cgatgcggtt
     2101 catcgccgcc cgccatgcgg ggcggccggc gccgcgcgca cgaacacgtc catctgctga
     2161 ccgaggtaca ccgggaggcc gtcgcgcgcg aagctgtaca ccacctgcag cacgcgtacg
     2221 tccgtccgtt cggtcgcctg ccccgtcaac gaggtcttgg gcaccacata cggctcgacg
     2281 tactcgtagc gcagcgggat ggacaggcgg ggatcgccgc gcacgaacgc gcgcccttcc
     2341 gcgccgggcc gcacgcgcca ggcatcgttc tcgtcgatgt cgacgcgcac gaacatgcgc
     2401 tcgtcgtcgc cgagcagcac gggcgggcgc acgccggcgc cttccgtggc gaactcgccg
     2461 ggccgcacgt tgacctgcag cgcgcggccg gccgaaggcg cccgcacctg caggcggtcg
     2521 aggtcgacgg cgagctgcgc tgcatgcgcg cgcgccgctt cgatcgccgc ctgcgccacg
     2581 cgcacgtcgt cgcgtgcgtt gctgatggct tcgcggctga tcgcctcccc gtcgagccga
     2641 tgcagggcca gcaggtagtc gagccggtgg cgcggctg
//
LOCUS       DATIQC010000234         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_262711, whole genome shotgun sequence.
ACCESSION   DATIQC010000234 DATIQC010000000
VERSION     DATIQC010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262711"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2201)
                     /locus_tag="VLM17_04915"
     CDS             complement(<1..>2201)
                     /locus_tag="VLM17_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014037748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HSR64931.1"
                     /translation="DGGPRDYVSYNLDSARVPDLPKPRPYREIWVYGPRVEGVHLRFG
                     PVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGSKGGFFCKQLPNPATERDAW
                     FAEGVACYKRFINGLLDITDNLVDGKVVHPANVVRHDGDDPYLVVAADKGTATFSDIA
                     NGIAQAHGFWLDDAFASGGSVGYDHKGMGITARGAWESVKRHFRAMGRDCQSQDFTCV
                     GVGDMSGDVFGNGMLLSRHIRLVAAFDHRHVFLDPNPDAAKSFRERERMFALPRSSWD
                     DYDRKLISKGGGVFPRSAKSIPLSPEAKAALGIDAAVDALSPAELMSAILKAPVDLLW
                     NGGIGTYVKASTETNADVGDRANNALRVNGTDLRCRVVGEGGNLGCTQLGRIEAALHG
                     VLLNTDFIDNSAGVDTSDHEVNIKILLNAQVKAKKLSLPDRNALLASMTDEVAALVLN
                     DNYRQNQALSLMQRMSLTRLGSKQHFIRTLEAQGLLDRAIEYLPTDAEIADRKARGQG
                     LTRPELAVLLSYSKLVLFQQLVDSDVPEDAYLSKELVRYFPEPLQKKYARAMEHHRLK
                     REIIATVVTNSMVNRMGATFTLRMTEDTGRTPGEVAKAYTISREALDVRGMWAQIDAL
                     DGKVAEEVQIDALLAIWNLIRGTSRWLLSRPGALPPIAEAVERYRGALDEIRTGLPGL
                     LPGHRGSGYSTRLKQWLERGVPAALAAQLAAMPLLDAGFDIVELARQRKLP"
BASE COUNT          311 a          759 c          771 g          360 t
ORIGIN      
        1 cggcagcttg cgctggcgcg ccagttcgac gatgtcgaag ccggcatcca gcagcggcat
       61 cgccgcgagc tgcgcggcca gcgcggcggg cacgccacgc tccagccact gcttcaggcg
      121 ggtggaatag ccggagccgc gatggccagg cagcaggccg ggcaggcccg tgcggatctc
      181 gtcgagcgcg ccgcggtagc gctcgaccgc ctccgcgatc ggcggcagcg cgccggggcg
      241 cgacagcagc cagcggctgg tgccgcggat caggttccag atcgccagca gcgcgtcgat
      301 ctgcacctcc tcggccacct tgccgtcgag cgcgtcgatc tgcgcccaca tcccgcgcac
      361 gtccagcgcc tcgcggctga tcgtgtaggc cttggcgacc tcgcccggcg tgcggccggt
      421 gtcctcggtc atgcgcaggg tgaaggtcgc gcccatgcgg ttgaccatcg agttggtcac
      481 cacggtggcg atgatctcgc gcttgaggcg gtggtgctcc atcgcccggg cgtacttctt
      541 ctgcaggggc tccgggaaat agcgcaccag ttccttcgac aggtacgcgt cctccggcac
      601 gtccgaatcc accagctgct ggaacagcac cagcttgctg taggacagca gcaccgcgag
      661 ctccggccgg gtcaggccct ggccgcgcgc cttgcgatcg gcgatctcgg cgtcggtggg
      721 caggtactcg atcgcgcggt cgagcaggcc ctgcgcctcc agcgtgcgga tgaagtgctg
      781 cttcgaaccg agccgggtca ggctcatgcg ctgcatcagc gacagcgcct ggttctgccg
      841 gtagttgtcg ttgagcacca gcgcggcgac ctcgtcggtc atcgacgcca gcagcgcgtt
      901 gcggtccggc agcgacagct tcttcgcctt cacctgcgcg ttgagcagga tcttgatgtt
      961 gacctcgtgg tccgaggtgt ccacgcccgc cgaattgtcg atgaagtcgg tgttgagcag
     1021 cacgccgtgc agcgccgcct cgatgcggcc gagctgggtg cagccgaggt tgccgccctc
     1081 gcccaccacc cggcagcgca ggtcggtgcc gttcacgcgc agcgcgttgt tggcgcggtc
     1141 gccgacgtcg gcgttggttt ccgtgctggc cttgacgtag gtgccgatgc cgccgttcca
     1201 cagcaggtcg accggcgcct tcaggatggc gctcatcagt tcggccgggc tcagtgcgtc
     1261 gaccgctgca tcgatgccca gcgccgcctt cgcctccggc gacagcggga tggacttggc
     1321 gctgcgcggg aacacgccgc cgcccttgct gatgagcttg cggtcgtagt cgtcccagct
     1381 cgagcgcggc agggcgaaca tgcgctcgcg ttccctgaac gatttcgccg catccgggtt
     1441 cgggtcgagg aagacgtgcc ggtgatcgaa cgcggcgacc aggcggatgt gccgggacag
     1501 cagcatgccg ttgccgaaca cgtcgcccga catgtcgccg acgccgacgc aggtgaagtc
     1561 ctgcgactgg cagtcgcgcc ccatcgcgcg gaaatggcgc ttgaccgatt cccacgcgcc
     1621 gcgcgcggtg atgcccatgc ccttgtggtc gtaaccgacc gaaccgccgg aggcgaacgc
     1681 gtcgtcgagc cagaagccgt gcgcctgggc gatgccgttg gcgatgtcgg agaaggtcgc
     1741 ggtgcccttg tcggcggcga ccaccaggta cggatcgtcg ccgtcgtggc ggaccacgtt
     1801 cgccggatgc acgaccttgc cgtcgaccag gttgtcggtg atgtcgagga ggccgttgat
     1861 gaagcgcttg tagcaggcca cgccctcggc gaaccacgcg tcgcgctcgg tcgccgggtt
     1921 gggcagctgc ttgcagaaga aaccgccctt cgatcccacc ggcacgatca cggtgttctt
     1981 caccatctgc gccttgacca ggcccagcac ctcggtgcgg aagtcctcgc gccggtccga
     2041 ccagcgcagg ccgccgcgcg cgaccgggcc gaagcgcagg tgcacgcctt ccacccgcgg
     2101 gccgtacacc cagatctcgc ggtacgggcg cggcttcggg aggtcgggca cgcgcgcgga
     2161 atcgagattg tagctgacgt agtcgcgcgg gccgccgtcg g
//
LOCUS       DATIQC010000235         9222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_545574, whole genome shotgun sequence.
ACCESSION   DATIQC010000235 DATIQC010000000
VERSION     DATIQC010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9222
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545574"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..747
                     /locus_tag="VLM17_04920"
     CDS             <1..747
                     /locus_tag="VLM17_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR64932.1"
                     /translation="LQVQAGLAQGASMQDARKSIEDTLKNVQFPPGYSYTFDGAGFNI
                     NFDGMDQMVRAIGIALVLMLVIMAAVFESLLFPLAIMSCVLFSIFGVYWLFWLTGTEM
                     NIMAVIGILVLMGVVVNNGIVMIEHINNLRRRGLSRTDALVEGSRERLRPIMMTMGTA
                     ILAMVPIALTTTQMAGNGPPYYPMARAIAGGLAFSTVVSLLFLPTIYAMLDDLRNATS
                     RLLARARGGRRDAGVPAATVAAGTVGAGLE"
     gene            complement(773..1738)
                     /locus_tag="VLM17_04925"
     CDS             complement(773..1738)
                     /locus_tag="VLM17_04925"
                     /inference="COORDINATES: protein motif:HMM:NF016362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HSR64933.1"
                     /translation="MSGWIGWLVPVALCLLLGFGASFYLQRVRLPHEETVAGITALAG
                     MRWRDFIHLVLAAMNARGYERVFVPEAGDESDYLLERDGQRWLLSSKHGTAYVLGSTT
                     ISEFAREIRMRGAAGGLLVTPGRFAPEAVALARTHRIDLLDGPALWPELRPLLPEAQR
                     AEVTGPARAQLQRQLLVAWGVALLAGVVAFLSMDHGRPDTAATGAVPTPMAGAAPVAV
                     AKPAAPAVAATVAPAAAVPTDPEELERRRKDVATGVSTLPGVDKALWSTQSTLLVYLS
                     DELSDPMSSVCPLLERYDELAASRVQLQPPAGSKHVVRFLQCRAF"
     gene            complement(1802..2077)
                     /locus_tag="VLM17_04930"
     CDS             complement(1802..2077)
                     /locus_tag="VLM17_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoic acid system family protein"
                     /protein_id="HSR64934.1"
                     /translation="MSSIELEHAHRLGDAAARRAVEDVAGKLAQRFGMDTRWEGDTLH
                     FRRPGVDGHIVLAPGLVRVRARLGLLLAAMRGPIEQEIRRVLDERFG"
     gene            2183..2971
                     /locus_tag="VLM17_04935"
     CDS             2183..2971
                     /locus_tag="VLM17_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HSR64935.1"
                     /translation="MNDLLLRFPGPPRTEHPLGPGMHGIGRATGGQGALGLVDAREAP
                     VRICVDRRGAWLYVDEGAGVHVNGRPVRRLAMLRAGDVVFVDGADIALVAPVAAPAAP
                     LPAAGGDGDPRVLLRGVGGRYHGRSFTLERPRLVGRAAEADIRLDEPGIADRQARLEP
                     HGDCVQLRDLGSAEGSLVNGQPVRDALLRPGDQVVFDGGHRFVVETPGHASAPAPRAD
                     AEEEAVERVAPALASSARRLPWLLLAALLIAAALSALLLFGSPS"
     gene            3092..4177
                     /gene="serC"
                     /locus_tag="VLM17_04940"
     CDS             3092..4177
                     /gene="serC"
                     /locus_tag="VLM17_04940"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HSR64936.1"
                     /translation="MTRAYNFSAGPATLPESVLRQARDEMLEWRDARASVVEISHRGA
                     EFIQVAAEAESDLRTLLSIPADYAVLFVAGGATVQQALLPLNFAAPGQAVDYVLTGHW
                     GKTAMKQAKPVSAVHVAASGEAGGFRAIPPRAEWQLTPGAAYVHITANETIHGVEFRD
                     VPDTGAVPLFADFSSSIASEPIDVSRYGLLYGGAQKNLGPVGIGFVIVRRDLLERAGQ
                     PRADIFDYRSQLKADSMLNTPPTWNWYMLGLTVKWMLAEGGVDEFARRNARKAALLYA
                     AIDGSGGFYRNDVDPAARSRMNVPFFLHDEALDKAFLAESKAAGLLALKGHRALGGMR
                     ASIYNAMPEDGVRALAAFMADFQRRHG"
     gene            4170..5339
                     /gene="hisC"
                     /locus_tag="VLM17_04945"
     CDS             4170..5339
                     /gene="hisC"
                     /locus_tag="VLM17_04945"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HSR64937.1"
                     /translation="MAEKRPSPAGTVGATQEVDEGWFAARARPGVRGLRAYDPGHDLA
                     ALRRRFADRLLVELGSNENPYGPSPAARAAVLDTLHQLHRYPDPLGGDLKRALASKLG
                     VERAQVLLGNGSHELLMQFAQVFAGEGDEVVASRYAFAVYALAARAAGARLEVAPALP
                     RDHAMARGHDLDAIAAAITPRTRLVYLANPNNPTGTWFGADAFARFLDAVPPEVVVVV
                     DEAYAECADAADYRSTLELLPAHPNLVVTRTFSKAYALAGLRIGYAVAHPGLVAVMER
                     VRESFNVNLVGLAAAQAALADEPHLRWTLARNGEQRSALAEALRARGWFVHPSQANFL
                     LVEFGEAAPRIESVLLEQGIVLRPMAGYELPQCLRITVGSADENRRLLAALDGLR"
     gene            5387..6655
                     /gene="aroA"
                     /locus_tag="VLM17_04950"
     CDS             5387..6655
                     /gene="aroA"
                     /locus_tag="VLM17_04950"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HSR64938.1"
                     /translation="MHGELAMPGDKSVSHRAVMLAALADGSSRIEGFLEGEDTRATAS
                     ILASLGVRIEAPAPSLRLVHGVGLDGLQPPAQPLDCGNAGTGMRLLAGVLAAQRFDSV
                     LVGDASLSKRPMRRVIEPLSRMGADIASSDGLPPLRIRGGRDLQGIDYALPVASAQVK
                     SAILLAGLHARGETRVREPHPTRDYTERMLRAFGWPIEFAPGEARLTGGHRLLPTDVQ
                     VPADFSSAAFFLVAATLVPGSHLLLRRVGMNPRRTGLLHVLRAMGADIVEERATEQGG
                     EPVADLRVRHAPLRGIDVPVGCVPDMIDEFPVLFAAAACAEGATTVRGAAELRVKESD
                     RIATMAAGLRALGIAVDESPDGARIHGGRLRGGAVDSHGDHRIAMAFAVAAQRADGDV
                     LIDDVANVATSFPGFPALAARVGLGLVARP"
     gene            6840..7067
                     /locus_tag="VLM17_04955"
     CDS             6840..7067
                     /locus_tag="VLM17_04955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64939.1"
                     /translation="MSEPTHPRTTGALEEIGLYNLLNRVARGQQDIDLFVLTALRQRG
                     FLDADRLALSESGRDELKRLAVCLGWFYPDT"
     gene            complement(7935..>9222)
                     /locus_tag="VLM17_04960"
     CDS             complement(7935..>9222)
                     /locus_tag="VLM17_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR64940.1"
                     /translation="LEMFETTVTFKPRSGWRPGMTPERLRAELDRIVQVPGLTSLWVP
                     PIRNRIDMLATGIKSPIGIKITGPDVAVLATLGDRIEQAARRVPGVSSAVSERATGGR
                     YVDVRIRRDAAARYGLGQADLQRLIATVVGGEPVAETIEGRARHPVVVRYPRAERDSL
                     AALRQLPVVGPGGVQFVLGEVAELSPTAGPPMLRSENGQPASYVYVDVAGRDLGPVVG
                     DLQQAVARQVRLPAGYAIGWSGQYEYLQRAVQRLRWVVPITLAIIFGLVYLVFRRIAE
                     TAIILLSLPFALVGGLWLTWLLGHAVSVATLIGFIALAGVAAEFGIVMLLYLQHAWDR
                     QLELDPRAGKAELDAAIREGAVQRVRPKAMTVAVILAGLVPLFIGSGAGSEVMQRIAA
                     PMLGGMLTAPLFSMLVIPAGYRLVQLGRIRTGAIGR"
BASE COUNT         1313 a         3332 c         3278 g         1299 t
ORIGIN      
        1 ctgcaggtgc aggccgggct ggcgcagggc gcgtccatgc aggacgcccg caaatcgatc
       61 gaggacaccc tgaagaacgt gcagttcccg ccgggctaca gctatacctt cgacggcgcc
      121 ggtttcaaca tcaacttcga cggcatggac cagatggtgc gcgcaatcgg catcgcgctg
      181 gtgctgatgc tggtgatcat ggcggcggtg ttcgaatcgc tgctgttccc gctggcgatc
      241 atgtcctgcg tgctgttctc gatcttcggc gtgtactggc tgttctggct gaccggcacc
      301 gagatgaaca tcatggcggt gatcggcatc ctggtgctga tgggcgtggt ggtgaacaac
      361 ggcatcgtga tgatcgagca catcaacaac ctgcgccggc gcgggctgtc gcgcaccgat
      421 gcgctggtgg agggcagccg cgaacgcctg cggccgatca tgatgacgat gggcacggcg
      481 atcctggcga tggtgccgat cgcgctcacc accacgcaga tggcgggcaa cgggccgccg
      541 tactacccga tggcgcgcgc gatcgccggc ggcctcgcgt tctcgaccgt ggtcagcctg
      601 ctgttcctgc cgacgatcta cgcgatgctc gacgacctgc gcaacgccac ctcccggctg
      661 ctggcacggg cccgcggggg gcgccgcgac gcgggcgtgc ccgcggcgac ggtggcggcg
      721 ggcaccgttg gagccgggct ggagtagggg cggcgtcgac cgcggcgcgg cgctagaacg
      781 cgcggcactg caggaagcgc accacgtgct tgctgccggc cggcggctgc agctgcacgc
      841 gcgaggcggc gagttcgtcg taacgctcga gcagcgggca gaccgacgac atcggatcgg
      901 acagttcgtc gctcaggtag accagcaggg tcgactgggt cgaccacagc gccttgtcga
      961 ccccgggcag cgtggacact cccgtcgcca cgtccttgcg gcgacgctcg agttcttccg
     1021 gatcggtcgg gaccgccgct gccggggcga ccgtcgccgc gacggccggg gcggccggtt
     1081 tcgccacggc gacgggcgcc gcgccggcca tgggggtcgg cacggccccg gtcgccgccg
     1141 tgtcggggcg cccgtggtcc atggacagga aggccaccac gccggccagc agcgccacgc
     1201 cccatgccac cagcaactgt cgctgcaact gcgcgcgggc cggcccggtc acttcggcgc
     1261 gctgcgcttc cggcagcagc gggcgcagtt ccggccacag cgcgggcccg tccaggaggt
     1321 cgatgcggtg cgtgcgcgcc agcgcgaccg cctccggcgc gaagcggccc ggcgtcacca
     1381 gcaggccgcc cgccgcgccc cgcatgcgga tctcgcgcgc gaattcggaa atcgtggtgg
     1441 acccgagcac gtaggcggtg ccgtgcttgg acgacagcag ccagcgctgg ccatcgcgct
     1501 cgagcaggta atcgctctcg tctccggctt ccgggacgaa cacccgttcg tagccgcgcg
     1561 cgttcatcgc cgccagcacg aggtggatga aatcgcgcca gcgcatgccg gccagcgccg
     1621 tgatgcccgc caccgtttcc tcgtggggca ggcgcacgcg ctggaggtag aagctggccc
     1681 cgaagccgag caggaggcac aaggcgacgg gcaccagcca gccgatccat ccgctcacgg
     1741 tgatcctccc gcgcaagggg cgcaaagcat agtcgaaacc cgcgtgaacg ccggggcgga
     1801 atcagccgaa gcgttcgtcg agcacccgcc ggatctcctg ctcgatcggc ccgcgcatcg
     1861 cggccagcag cagcccgagt cgcgcgcgca cccgcaccag gcccggcgcc agcacgatgt
     1921 ggccatccac gccggggcgg cggaaatgca gggtgtctcc ttcccagcgg gtgtccatgc
     1981 cgaagcgctg ggcgagcttg ccggcgacgt cctccaccgc gcggcgcgcg gcggcgtcac
     2041 ccaggcggtg cgcgtgctcc agttcgatgc tcgacatgca ggcggcgcgg cagaggaggg
     2101 ggacgcattg tcgccgcacg cgcggcgacg ggccagcgcg cgcatcgcga cgggcgtccg
     2161 ggttctgcta gattgaggcg acgtgaacga tctcctgttg cgattccccg gcccgcctcg
     2221 caccgagcat ccgctcggcc cgggcatgca tggcatcggc cgcgccaccg gcgggcaggg
     2281 cgcgctcggg ctggtcgacg cgcgcgaggc gccggtgcgc atctgcgtcg atcgccgcgg
     2341 cgcctggctg tacgtggacg agggcgcggg cgtgcacgtc aacggcaggc ccgtgcgccg
     2401 gctggcgatg ctgcgcgcgg gcgacgtggt gttcgtcgat ggcgcggaca tcgcgctcgt
     2461 cgcgcccgtc gccgcgcctg ccgcgcccct ccccgcggcc ggtggcgacg gcgacccgcg
     2521 cgtgctgctg cgcggcgtcg gcggccgcta ccacgggcgc agcttcaccc tcgagcgccc
     2581 gcgcctggtc ggccgcgcgg ccgaggccga catccgcctc gacgagcccg gcatcgccga
     2641 ccgccaggcg cggctggaac cgcacggcga ttgcgtgcaa ctgcgcgacc tcggttcggc
     2701 cgaaggcagc ctggtcaacg gccaaccggt gcgcgacgcg ctgctgcggc cgggcgacca
     2761 ggtcgtgttc gacggcggtc atcgtttcgt ggtcgaaacc ccgggccatg cgagcgcgcc
     2821 ggcgccgcgc gcggacgccg aggaagaggc ggtcgaacgc gtggcgcccg cgctcgcctc
     2881 gtcggcgcgc cggctgccct ggctgctgct cgccgcgctg ctgatcgccg ctgccctcag
     2941 cgcgctgctg ctgttcggat cgccgtcctg atcgacgccg catgcgccgg ccggcccctg
     3001 cgccggccgc atcgcgcggc gcacgcgtgc tagcctgagc cgccgaccgt cgcgcgcccg
     3061 gcgcgacctc catcgcgaag acccatcccc catgacgcgt gcctacaact tcagcgccgg
     3121 cccggcgacg ctgcccgaat ccgtcctgcg ccaggcccgg gacgaaatgc tcgaatggcg
     3181 cgacgcccgc gcctccgtcg tcgagatcag ccaccgcggc gcggagttca tccaggtcgc
     3241 ggcggaggcg gagtccgacc tgcgcacgct gctgtcgatt cccgccgact acgccgtgct
     3301 gttcgtcgcc ggcggcgcga ccgtgcagca ggcgttgctg ccgctgaatt tcgccgcccc
     3361 cggccaggcg gtcgactacg tgctcacggg acactggggc aagaccgcga tgaagcaggc
     3421 gaagccggtg tcggccgtgc acgtcgccgc gagtggcgag gccggcggct tccgcgccat
     3481 cccgccgcgc gcggagtggc agctcacgcc cggtgcggcc tacgtgcaca tcaccgcgaa
     3541 cgaaaccatc cacggcgtcg agttccgcga cgttccggac accggcgccg tgccgctgtt
     3601 cgccgacttc agctcgtcga tcgcgtccga gccgatcgac gtttcgcgct acggcctgct
     3661 ctacggcggc gcgcagaaga acctcggacc ggtgggcatc ggcttcgtca tcgtgcgccg
     3721 cgacctgctc gagcgcgccg gccagccgcg cgcggacatc ttcgactacc gctcgcagct
     3781 caaggcggat tcgatgctca acacgccgcc gacctggaac tggtacatgc tcggcctgac
     3841 ggtgaagtgg atgctcgccg aaggcggcgt cgacgaattc gcccgccgca acgcgcgcaa
     3901 ggccgcactg ctgtacgcgg cgatcgacgg ttccggcggc ttctaccgca acgacgtcga
     3961 tccggcggcg cgatcgcgca tgaacgtgcc gttcttcctg cacgacgagg ccctggacaa
     4021 ggccttcctc gcagagtcca aggcggccgg gctgctcgcg ctgaagggcc accgcgcgct
     4081 cggcggcatg cgcgcgtcga tctacaacgc gatgccggag gatggcgtgc gcgcgctggc
     4141 ggccttcatg gcggatttcc agcggcgcca tggctgaaaa gcgcccgtca ccggccggta
     4201 cggtcggcgc gacgcaggag gtggacgaag ggtggttcgc cgcgcgcgcg cgaccaggcg
     4261 tgcgcggcct gcgcgcctac gatcccggcc acgacctggc cgccctgcgc cggcgcttcg
     4321 ccgaccgtct cctggtcgaa ctgggttcga acgagaatcc ctacgggcca tcgcctgccg
     4381 cgcgcgcggc cgtgctcgac accctgcacc agctgcaccg ctaccccgat ccgctcggcg
     4441 gcgacctcaa gcgcgcgctg gcgtcgaaac tgggcgtgga gcgggcgcaa gtgctgctcg
     4501 gcaacggttc gcacgaactg ctgatgcagt tcgcgcaggt gttcgcgggg gagggcgacg
     4561 aagtcgtcgc ctcccggtac gccttcgccg tgtacgcgct cgccgcgcgg gcggccggcg
     4621 ccaggctgga ggtggcgcca gcgctgccgc gcgaccacgc gatggcgcgc ggccacgacc
     4681 tcgacgccat cgccgccgcc atcacgccgc gcacgcgact ggtctacctg gccaatccca
     4741 acaacccgac cggcacctgg ttcggcgcgg acgccttcgc gcgcttcctc gacgcggtcc
     4801 ccccggaggt cgtggtcgtc gtcgacgagg cctacgccga gtgcgccgac gccgcggatt
     4861 atcggtcgac ccttgagctg ctgcccgcgc acccgaacct ggtggtcacc cgtaccttca
     4921 gcaaggccta cgcgctcgcg ggcctgcgga tcggctacgc cgtggcgcac ccgggcctgg
     4981 tcgcggtgat ggaacgggtg cgcgaaagct tcaacgtcaa cctggtcggc ctcgccgccg
     5041 cgcaggccgc actcgccgac gagccgcacc tgcggtggac gctcgcccgc aacggcgaac
     5101 agcgcagcgc gctggccgaa gcgctgcgcg cacgcggctg gttcgtgcat ccctcgcagg
     5161 cgaatttcct gctggtcgag ttcggcgagg ccgcgccgcg catcgagtcc gtactcctgg
     5221 aacagggcat cgtgctgcgg ccgatggccg gctacgagct gccgcagtgc ctgcgcatca
     5281 ccgtcggcag cgccgacgag aaccgccgcc tcctggcggc gctggatggc ctgcggtgag
     5341 cggcgaagcg ccacgccagg cgtgggccgc ggggcagggt ggcccgctgc acggcgaact
     5401 ggccatgccc ggcgacaagt cggtgtccca ccgcgcggtg atgctggctg cgctggccga
     5461 cggcagctcg cgcatcgaag ggttcctcga gggcgaggac acccgcgcca ccgcatccat
     5521 cctcgccagc ctgggcgtgc gcatcgaggc gccagcgccg agcctgcggc tggtgcacgg
     5581 cgtcggcctc gacggcctgc agccgccggc gcagccgctg gattgcggca atgcgggcac
     5641 cggcatgcgc ctgctcgcgg gcgtgctcgc cgcgcagcgt ttcgacagcg tgctggtcgg
     5701 cgacgcatcg ctgtcgaagc ggccgatgcg gcgcgtgatc gaaccgttgt cgcggatggg
     5761 cgcggacatc gcgtccagcg acggcctgcc gccgctgcgc atccgcggcg gacgcgacct
     5821 gcagggcatc gactatgcgc tgccggtggc gagcgcgcag gtgaagtcgg cgatcctgct
     5881 ggcgggcctg catgcgcgtg gcgaaacccg ggtccgcgaa ccgcatccga cccgcgacta
     5941 caccgagcgc atgctgcggg cgttcggctg gccgatcgag ttcgcgcccg gcgaggcacg
     6001 cctgaccggc ggccatcgcc tgctgccgac cgacgtgcag gtgccggcgg acttctcgtc
     6061 ggccgcgttc ttcctggtcg cggcgacgct ggtgccgggt tcgcacctgc tgctgcgccg
     6121 cgtcggcatg aacccgcgtc gcaccggact gctgcacgtg ctgcgcgcga tgggcgccga
     6181 catcgtcgag gaacgcgcga cggagcaggg cggcgaaccg gtcgccgatt tgcgcgtacg
     6241 gcatgcgccg ctgcggggca tcgacgttcc cgtcggatgc gtgccggaca tgatcgacga
     6301 gttcccggtg ctgttcgccg ccgcagcctg cgccgagggc gccaccaccg tgcgtggcgc
     6361 ggccgagctg cgggtcaagg agtccgaccg catcgccacc atggccgccg gcctgcgcgc
     6421 gctcggcatc gccgtcgacg aatcccccga tggcgcccgc atccatggcg ggcgcctgcg
     6481 cggcggcgcg gtcgacagcc atggcgacca ccgcatcgcg atggcgttcg ccgtggccgc
     6541 ccagcgcgcc gacggcgacg tgctgatcga tgacgtcgcc aacgtggcga cctcgttccc
     6601 gggcttcccg gccctggccg cccgggtcgg gttggggctg gtggcgaggc cctgacgcgc
     6661 ggtggcacgg tggatctggc gcgcgcggct ttccgccccg cggacaatcc gcgttacggg
     6721 ccgctgctcg tccgctcccg ttgcggcagg cgccgtcgtg aacgtcgcgt catgggctcg
     6781 cgggtcgcgg tcccttaagc tcggcgcgtt gcaagccaac ggcggatcgt agccacatga
     6841 tgagcgagcc cacgcacccg cgcacgacgg gggcgctcga ggaaatcggc ctctacaacc
     6901 tgctgaatcg tgtcgccagg gggcagcagg acatcgacct gttcgtgctc acggcacttc
     6961 gccaacgcgg cttcctcgac gccgaccggc tggcgctcag cgaatccggc cgggacgaac
     7021 tgaagcggct cgcggtctgc ctcggctggt tttaccccga tacctgaccg caccgaccga
     7081 cctgcccgag cgcgtcgtcg ccctggaacg gcgatggcgg ctcgtgggcc gcgaaccccg
     7141 gcccccgctg accgtcactt gcttccgcta tcgtttggcc cggggacagg ggagaagata
     7201 tgcggctggc cttggtagtg ctgctgctgg cgtgggtatc agccgccggg gcagaagaaa
     7261 tcatctggaa gtgcaaaggg ccgaaaggct cgcttgtcta ccaaaattcg ccctgcgccc
     7321 cgggaacgac acaagcggcg aaggtctatg acacgccgga tcaccccgag gccatcgccg
     7381 aaagggatcg caacgagcgg atcatggaac tgcgaaggcg gcagcaagcg tcatcgactt
     7441 tcagtagcgc gtcctggcgt cccggggttg cgtcggaacg cgatagaaaa agggctctat
     7501 gcaaggacgc ccaggaacga gcgcaccgag ccgctctcga tggtgcgtcg gatgcgcttc
     7561 gagctgcata cgagagagcg gctatagacg agtgtttcgg gttatgagct cgctccgcgc
     7621 caccaggcgc tgtccagcca cggggcgcgc tcggcgaagg gccgtagagc cgtccggcgt
     7681 ggtgatatga ggcgcatgta ccagccatag ccgagccggg gctcgcgagg cgccacgcgg
     7741 gatccgaaat ttctgccgtg ggaggcggtt cggatgcctg atccgacccc tcttcaactt
     7801 cgcataatgc cgattatgta aaacaaccac cgactgcagc ccgcccccgg ccccgcgcgg
     7861 cccgggtgcg ccgtttccct tcccgcgccg cgagcccgtc gcggcgacgc aagcccgcct
     7921 tcggccggca gcggtcaccg gccgatcgca cctgttcgga tgcgcccaag ctgcacgagc
     7981 cggtagccgg ccgggatcac cagcatcgag aacaacggcg cggtgagcat tccgccgagc
     8041 atgggcgcgg cgatgcgctg catcacttcg gagccggcgc cgctgccgat gaacaacggc
     8101 accaggcccg ccaggatcac cgcgacggtc atcgccttcg gcctcacgcg ctggacggct
     8161 ccctcgcgga tggcggcgtc gagctccgcc ttgccagccc gcggatcgag ttccagctgg
     8221 cggtcccagg cgtgctggag atacagcagc atgacgatgc cgaactcggc ggccacgccg
     8281 gccagcgcga tgaagccgat cagcgtcgcg accgagaccg catggcccag cagccaggtc
     8341 agccagaggc caccgaccag ggcgaacggc aggctgagca ggatgatggc ggtttccgcg
     8401 atcctccgga acacaaggta gaccaggccg aagatgatgg cgagggtgat gggcaccacc
     8461 cagcgcaggc gctggaccgc ccgctgcagg tattcgtact ggccggacca gccgatcgca
     8521 taccccgccg gcaacctgac ctggcgggcg acggcttgct ggaggtcgcc cacgaccggg
     8581 ccgagatccc gcccggcgac atcgacgtag acatagctcg ccggttggcc gttttcgctc
     8641 ctgagcatcg gcggccctgc cgtgggagac agctcggcga cctcgccgag gacgaactgg
     8701 acaccgccgg ggccgacgac cggcaactgc cgcagggccg ccagcgagtc gcgttccgcc
     8761 cgcggatagc gcaccaccac cggatggcgc gccctcccct cgatcgtctc ggcgaccggc
     8821 tcgccgccga ccacggtggc gatcagccgt tgcaggtcgg cctggcccag gccgtagcgg
     8881 gcggctgcat ccctgcggat cctgacgtcc acgtagcgcc cgcccgtcgc ccgttcggac
     8941 acggcggaac tcacgcccgg cacgcgacgc gccgcctgct cgatgcggtc gccgagggtc
     9001 gccagcaccg cgacgtcggg gccggtgatc ttgatgccga tcgggctctt gatgccggtg
     9061 gcgagcatgt cgatgcggtt gcggatcggc ggcacccaga ggctggtgag gcccggcacc
     9121 tgcacgatgc ggtcgagttc cgcacgcagg cgttccggcg tcatgcccgg tcgccacccg
     9181 ctcctcggct tgaacgtcac cgtcgtttcg aacatctcga gc
//
LOCUS       DATIQC010000236         1519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_651735, whole genome shotgun sequence.
ACCESSION   DATIQC010000236 DATIQC010000000
VERSION     DATIQC010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_651735"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VLM17_04965"
     CDS             <1..669
                     /locus_tag="VLM17_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HSR64941.1"
                     /translation="QDTLLGFGAGIMLAASAFSLVLPGLQEARRQGAGAWSAGLIVGA
                     AILAGAALILALDRIVPHEHFVKGPEGGSPQRLKRAWLFVFAVCLHNLPEGLAIGVGY
                     AAGDLSHGTALAAGIAIQDLPEGLVVALALIAVGYGRAWSLMVGMVSGLIEPVGAVAG
                     ASVVTAVPGLLPCGLGFAAGAMLYVVSHEIIPESHRQGHEHWATAGLMSGFVLMMVLD
                     TALG"
     gene            931..1185
                     /locus_tag="VLM17_04970"
     CDS             931..1185
                     /locus_tag="VLM17_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64942.1"
                     /translation="MVERISGWRCIGCGKVDAPRPCVGVCQDRPVQLVTAGDYDALLQ
                     RSEQLEALAQLIAHLTPREGEWEASWRALQARAQALLKSR"
     gene            1272..>1519
                     /locus_tag="VLM17_04975"
     CDS             1272..>1519
                     /locus_tag="VLM17_04975"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64943.1"
                     /translation="MKATFRTLAPTASLFATLALPAALLAHPPGMHGGMHAMHDDMFA
                     TMDANRDGRISAQEHADGAAKMFTTADANHDGYLTLDE"
BASE COUNT          201 a          534 c          575 g          209 t
ORIGIN      
        1 caggacacgc tgctcggctt cggcgccggc atcatgctcg ccgcgagcgc gttctcgctg
       61 gtcctgccgg ggctgcagga agcgcgccgg cagggcgccg gtgcgtggag cgcggggctc
      121 atcgtcggcg cggcgatcct cgcgggcgcc gcgctgatcc tcgcgctcga ccggatcgtg
      181 ccgcacgagc acttcgtcaa gggaccggaa ggcggttcgc cgcagcggct caagcgcgcg
      241 tggctgttcg tgttcgcggt ctgcctgcac aacctgcccg aaggcctcgc catcggcgtc
      301 ggctacgcgg ccggcgacct gtcgcacggc accgcgctcg ccgccggcat cgcgatccag
      361 gacctgcccg aaggcctggt cgtcgcgctg gcgctgatcg cggtcggcta cgggcgtgcg
      421 tggtcgctga tggtcgggat ggtgtcgggg ctgatcgagc cggtcggcgc ggtggccggc
      481 gcgagcgtgg tcaccgcggt gccggggctg ctgccgtgcg ggctcggctt cgccgccggc
      541 gcgatgctgt acgtggtcag ccacgagatc atcccggagt cgcaccgcca gggccacgag
      601 cactgggcga cggccgggct gatgtccggt ttcgtgctga tgatggtgct ggatacggcg
      661 ctgggatgaa gcgggcgctg ggatgaagcg ggcgctggga tgaagccggc gcccgggtgg
      721 atgcgcggcg cggaaggtga ggggcacgcc tgtttgcggc ggacgaggtc gcaggcgttc
      781 acgacgcacc cctcaccggt aaaccgcgcg tccagtctcg gctcgcgtcg gtaaaagcac
      841 cgcgaaaacc gcgcagtcag ctgcctcatg cggggccggc cttgaccccg gtcaaagcgg
      901 cggcgcgccg cgccatccag acttgcgcgc atggtcgaac gcatttccgg ctggcgctgc
      961 atcggttgcg gcaaggtgga cgccccgcgg ccgtgcgtgg gcgtgtgcca ggaccggccg
     1021 gtgcaactgg tgaccgccgg ggactacgac gcgctgctgc aacgcagcga gcaactcgag
     1081 gccctggccc aactgatcgc ccacctcacc ccgcgcgaag gggagtggga ggcctcctgg
     1141 cgggcgctgc aggcgcgggc gcaggcgctg ctgaagtcgc gctagcgccg gcggggcggc
     1201 cgcggcgggc ttgacgggcg gctcaccggg cgcggcgcag gctggcaggg ttcccccgcc
     1261 ggagaccgcg catgaaagcc accttccgca ccctcgcccc gaccgcgtcg ctgttcgcca
     1321 ccctcgcgct gcccgccgcg ctgctggcgc atccgccggg catgcacggc ggcatgcacg
     1381 cgatgcacga cgacatgttc gccaccatgg acgccaaccg cgacggccgc atctccgcgc
     1441 aggagcacgc cgacggcgcg gcgaagatgt tcacgacggc cgacgccaac cacgacggct
     1501 acctcaccct cgacgagat
//
LOCUS       DATIQC010000237         6965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_263155, whole genome shotgun sequence.
ACCESSION   DATIQC010000237 DATIQC010000000
VERSION     DATIQC010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6965
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263155"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VLM17_04980"
     CDS             complement(<1..858)
                     /locus_tag="VLM17_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HSR64944.1"
                     /translation="MARVARPAPALAEAGETPLTRLPGVGPRVAGKLAARGLLTLQDL
                     WLQLPRQYEDRTRLTPIRALQAGVAAQVEGVVEAVDRGFRYRPMLRVALGDDSRATLV
                     LRFFHFRAAQVAQFAPGTRVRAYGTPRAGQHGLEIVHPSYRVLDADGGDLGDALDPVY
                     PAIEGTGPAALRKLIGLALERLPGDDALELLPRAWLADFGLPPLREALRTVHRPPPGS
                     DVAALLAGTHPAQRRLALEELLAHHLSLRRQRIALQSHRAAALAGPGLLAQRLLDALP
                     FALTGAQQRG"
     gene            complement(867..1250)
                     /locus_tag="VLM17_04985"
     CDS             complement(867..1250)
                     /locus_tag="VLM17_04985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003477371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR64945.1"
                     /translation="MPRQPIHSDAAPAAIGPYSQAVRHGNTVYLSGQIPLDPATGQLV
                     EGDITAQARRAFDNLRAVCAAAGGSFANVVRVGLYLTDLGQFAAVNAVMAEVFEAPYP
                     ARSTIQVSALPRGAQFEVDAVMVLD"
     gene            complement(1312..3495)
                     /locus_tag="VLM17_04990"
     CDS             complement(1312..3495)
                     /locus_tag="VLM17_04990"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HSR64946.1"
                     /translation="MSPGTSAPAFAAIPAPPEEALPDYMRALQQATDYLPEDQRRQLR
                     RAWAVGAAAHAGQTRKSGEPYITHPVAVAAVLAEQRVDVETLVAAILHDTLEDTPLAR
                     ESIAGEFGETVAELVDGVTKLDKLQFADRQEAAAESFRKMLLAMARDLRVILIKLADR
                     LHNMRTLGAQTAEARTRIARETLEVYAPIAQRLGMNLFKAELQDLGFRALHPWRHAVL
                     EKRIRTQPLLRREALARIEAQLAQRLTKEGLQYRLVSRVKSPWSIYTKMRAEGKTFDQ
                     VMDVFGFRIVVRSVAECYHALGVVHSAFKPLDGRFRDFIAIPKANGYQSLHTVLFGPY
                     GSPIEVQMRTEEMDLIAERGIAAHWAYKHGGATTSAQSRAQSWIANLLESQRATGSSL
                     EFLENVKVDLFPDEVYLFTPKGDILALPRNSTALDFAYSVHTDLGNHAVAARVDRKLV
                     PLRTKLASGQKVEVITAPSAAPQPQWLEFVVTGKARTAIRHQLKHLEHEDAVQLGHRM
                     LDRALEGLRTSLDRLPPAQLEAFLGEHRYPRLEALLADIALGNRMPAQVAQALAQPAG
                     SRAEAPRAKPEPLVPGERILITGHERCVITFANCCLPIPGDEIMGFHTTGRGLVVHRL
                     DCPNVADYRKSPERWVPIGWDREVSGDFRTALAIEVENRPGVLAQVAAAIAQAESNID
                     GVEYLERDSNVAAIRFSIEVRDRKHIADVIRRVRRLAVVHGVQRL"
     gene            complement(3650..3949)
                     /gene="rpoZ"
                     /locus_tag="VLM17_04995"
     CDS             complement(3650..3949)
                     /gene="rpoZ"
                     /locus_tag="VLM17_04995"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HSR64947.1"
                     /translation="MARITVEDCLQVVDNRFELVMMAAKRARQLANGVEPQIDNAEAN
                     DKPTVLALREIAARRIDTDYIDAVEKAERERKEREAMEWAAAEVVADDDMSKGDD"
     gene            complement(4083..4718)
                     /gene="gmk"
                     /locus_tag="VLM17_05000"
     CDS             complement(4083..4718)
                     /gene="gmk"
                     /locus_tag="VLM17_05000"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010377105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HSR64948.1"
                     /translation="MSADAATRGILFIVAAPSGAGKSSLVNACLARDPNIRLSVSFTS
                     RAPRPGERHAEHYHFVSAGEFEAMVAAGDFFEHARVHGDWKGTARQSVEPQLAAGQDV
                     LLEIDWQGAAQVRAKVADAVSVFILPPSREALQQRMRHRGQDSEEVIARRLAAAREEM
                     SHYAEFDYVVVNEVFDAAVEELCAIFTASRLRREVQARRHAGLIATLLAGE"
     gene            complement(4723..5583)
                     /locus_tag="VLM17_05005"
     CDS             complement(4723..5583)
                     /locus_tag="VLM17_05005"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005996763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HSR64949.1"
                     /translation="MIRSMTAFASGERATAWGTLGCELRAVNHRFLEIGVRLPEELRA
                     LEPALRERIASRVSRGKLDATVRLRAPEGGEAPRLDAGRVEQLAGLAAALQARFPAMQ
                     VGFTDLLAYPGVLQGGGADAAALQAEALALLGEVLDGFVAAREREGAKLAAGIRERID
                     AVAGIAADVRTLIPAIRAGQRQKLEARLAELATPADPARVEQELVLWLQKLDVDEELD
                     RLDSHVAELRRVLVQKEPVGRRLDFLLQEFNREANTLGSKSVDARTSRAAIELKVLID
                     QVREQIQNIE"
     gene            5721..6470
                     /gene="rph"
                     /locus_tag="VLM17_05010"
     CDS             5721..6470
                     /gene="rph"
                     /locus_tag="VLM17_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HSR64950.1"
                     /translation="MDTPLRPSGRLPAQLRPITLTRGFTRHAEGSVLVCFGETRVLCT
                     ATIDNKVPAFLRGKGEGWVTAEYGMLPRATHTRSDREAARGKQGGRTLEIQRLIGRAL
                     RACVDRSALGERTITLDCDVLQADGGTRTAAITGAYVALVDAVRWLVARREIAPRPGR
                     DPIVGAVAAVSVGIWRGVPVLDLDYAEDSACDTDMNVVMNDGGGFIELQGTAEGHAFR
                     RDELDALLALAEDGCRELFALQQAALAQPLA"
     gene            6479..>6965
                     /gene="rdgB"
                     /locus_tag="VLM17_05015"
     CDS             6479..>6965
                     /gene="rdgB"
                     /locus_tag="VLM17_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009578828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HSR64951.1"
                     /translation="MKLVLASGNAGKLRELRELLAGAGFELHAQSEFGVGDIDETGLT
                     FVENALLKARHAARATGLPALADDSGLCVDALGGAPGLRSARYAGVHGDSRANIARLL
                     DALRDVPDERRTAHFHAAIVLLRHPDDPRPLIAEGSWHGRILPAPRGEAGFGYDPVFF
                     DP"
BASE COUNT          926 a         2516 c         2539 g          984 t
ORIGIN      
        1 cccgcgctgc tgcgcgccgg tgagcgcgaa cgggagcgca tcgagcaggc gctgcgccag
       61 aaggcccggg ccggccagcg cggcggcgcg atgggactgc agcgcgatgc gctggcggcg
      121 caggctcagg tggtgcgcga gcagttcctc cagcgcgagg cggcgctgcg ccgggtgggt
      181 gccggcgagc agcgcggcga cgtcgctgcc gggcggcggc cgatgcacgg tgcgcagcgc
      241 ctcgcgcaac ggcggcaggc cgaagtcggc gagccatgca cgcggcagca gttcgagcgc
      301 gtcgtccccg ggcaggcgct cgagcgcgag gccgatcagc ttgcgcagcg ccgccggacc
      361 ggtgccttcg atcgcggggt agaccggatc gagcgcatcg ccgaggtcgc cgccgtcggc
      421 gtcgagcacg cggtagctcg gatgcacgat ctccaggccg tgctggccgg cgcgcggcgt
      481 gccgtaggcg cgcacgcgcg tgccgggcgc gaactgcgcg acctgcgcgg cgcggaagtg
      541 gaagaaccgc agcaccagcg tcgcgcggga gtcgtcgccg agcgccacgc gcagcatcgg
      601 ccggtagcgg aagccgcggt cgaccgcttc gaccacgccc tcgacctgcg cggccacgcc
      661 ggcctgcagc gcgcggatcg gcgtcagccg ggtgcggtcc tcgtactgcc tcggcagctg
      721 cagccacagg tcctgcagcg tgagcagccc gcgcgcggcg agcttcccgg cgacgcgcgg
      781 gccgacgcca ggcaggcgcg tcagcggcgt ttcgccggcc tcggccagcg cgggtgcggg
      841 gcgggcgaca cgcgccatgc ggtcggtcag tcgagcacca tcaccgcgtc gacctcgaac
      901 tgcgcgccgc gcggaagggc cgacacctgg atggtcgagc gcgccgggta cggcgcttcg
      961 aagacctccg ccatcaccgc gttgaccgcg gcgaactgac cgaggtcggt caggtacagg
     1021 cccacccgca cgacgttcgc gaacgagccg ccggccgctg cgcagaccgc gcgcaggttg
     1081 tcgaaggcgc gccgcgcctg cgccgtgatg tcgccttcga ccagctggcc ggtggcggga
     1141 tcgagcggga tctggccgga caggtagacg gtgttgccgt ggcgcacggc ctgcgaatac
     1201 gggccgatgg cagccggggc ggcgtcggaa tggatgggct ggcgcggcat ggcgacgtca
     1261 ctcgtgggga cggaagcggg catcgtaagg catgcccgcc ggatgcaggc ctcagagccg
     1321 ttgcacgccg tgcacgacgg cgaggcgtcg cacgcgacgg atcacgtcgg cgatgtgctt
     1381 gcggtcgcgc acctcgatcg agaagcggat cgcggcgacg ttgctgtcgc gctcgaggta
     1441 ctcgacgccg tcgatgttcg attccgcctg cgcgatcgcc gccgccacct gcgcgagcac
     1501 cccggggcgg ttctcgacct cgatcgccag cgcggtgcgg aagtcgcccg acacctcgcg
     1561 gtcccagccg atcggcaccc agcgctcggg cgacttgcgg tagtcggcga cgttcgggca
     1621 gtccagccgg tggacgacga ggccgcggcc ggtggtgtgg aaccccatga tctcgtcacc
     1681 ggggatcggc aggcagcagt tggcgaaggt gatgacgcag cgctcgtggc cggtgatcag
     1741 gatgcgttcg cccggcacca gcggctcggg tttcgcgcgc ggcgcctccg cgcggctgcc
     1801 ggccggctgg gccagcgcct gcgcgacctg cgccggcatg cggttgccga gcgcgatgtc
     1861 ggccagcagc gcttccagcc gcggataacg gtgctcgccc aggaaggcct cgagctgcgc
     1921 cggcggcagg cggtcgagcg aggtgcgcag gccttccagc gcgcggtcga gcatgcggtg
     1981 gccgagctgc accgcgtcct cgtgctcgag gtgcttgagc tggtggcgga tcgcggtgcg
     2041 cgccttgccg gtgaccacga actccagcca ctgcggctgc ggcgccgccg acggcgcggt
     2101 gatcacctcg accttctggc cgctcgcgag cttggtgcgc agcggcacca gcttgcggtc
     2161 cacgcgcgcg gccaccgcgt ggttgccgag gtcggtgtgc accgaatagg cgaagtcgag
     2221 cgcggtggag ttgcgcggca gggcgaggat gtcgcccttg ggcgtgaaca ggtagacctc
     2281 gtccgggaac aggtcgacct tgacgttctc gaggaactcc agcgacgagc cggtcgcacg
     2341 ctggctttcc aggaggttgg cgatccacga ctgcgcgcgg ctctgcgcgc tggtggtcgc
     2401 gccgccgtgc ttgtaggccc agtgcgccgc gatgccgcgt tcggcgatca ggtccatctc
     2461 ctcggtgcgc atctgcactt cgatcggcga accgtagggt ccgaacagca cggtgtgcag
     2521 cgactggtag ccgttggcct tcgggatcgc gatgaagtcc cggaagcgcc cgtcgagcgg
     2581 cttgaacgcc gaatgcacca cccccagcgc gtggtagcac tcggcgaccg aacgcaccac
     2641 gatgcggaag ccgaacacgt ccatcacctg gtcgaaggtt ttcccctcgg cgcgcatctt
     2701 ggtgtagatg ctccacggcg acttcacccg gctcaccagc cggtactgca ggccttcctt
     2761 ggtcaggcgc tgcgcgagct gcgcctcgat ccgcgccagc gcctcgcgcc gcagcagcgg
     2821 ctgcgtgcgg atgcgcttct ccagcaccgc gtggcgccac ggatgcagcg cgcggaaacc
     2881 gaggtcctgc agctcggcct tgaacaggtt catgcccagg cgctgcgcga tcggcgcgta
     2941 gacctccagc gtctcgcggg cgatgcgcgt gcgcgcctcg gcggtctgcg cgccgagcgt
     3001 gcgcatgttg tgcaggcggt cggcgagctt gatcaggatc acgcgcaggt cgcgcgccat
     3061 cgccagcagc atcttgcgga agctttcggc ggccgcttcc tggcggtcgg cgaactgcag
     3121 cttgtcgagc ttggtgacgc cgtccaccag ttcggcgacc gtctccccga attcgccggc
     3181 gatgctctcg cgcgcgagcg gggtgtcctc cagggtgtcg tgcaggatcg cggcgaccag
     3241 cgtctcgacg tcgacccgct gctcggccag caccgcggcg accgcgaccg ggtgggtgat
     3301 gtagggctcg ccggacttgc gcgtctgccc ggcatgcgcc gcggcgccga ccgcccaggc
     3361 acggcgcagc tggcggcgct ggtcttcagg caggtagtcg gtggcctgct gcagcgcgcg
     3421 catgtagtcc ggcagcgcct cctcgggggg cgcgggaatg gccgcgaagg ccggtgcgga
     3481 cgtgccggga ctcatgccgc cagcctacgg cgcggggcgg gattagggaa cggggcgggc
     3541 gtgaagcccg cttcgccgaa gtcccccggc cgctcgcgga gccccgggcc gggacaaatg
     3601 aaaagccccg ccgaagcggg gcttttttcg caaaacgatc ctggcggact cagtcgtcgc
     3661 ccttcgacat gtcgtcgtcg gcgaccacct cggccgcggc ccattccatc gcctcgcgct
     3721 ccttgcgctc gcgctcggcc ttctcgaccg cgtcgatgta gtcggtgtcg atgcggcggg
     3781 cggcgatctc gcgcagcgcc agcacggtcg gcttgtcgtt ggcctcggcg ttgtcgatct
     3841 gcggctcgac gccgttggcc agctggcgcg cgcgcttggc ggccatcatg acgagctcga
     3901 aacggttgtc gaccacctgc aggcagtctt cgacggtgat gcgggccatg cggactcccg
     3961 gacgggccga gcggccggtc ctgactttgg cgaagggggc ggccattcta tggcccggcc
     4021 gccgcgcagg caagcctttc cttgtgaatc agttggttag gccgcgaccc aggcccccgg
     4081 gcctattcgc cggcgagcag ggtcgcgatc agcccggcat gccgccgcgc ctgcacctcg
     4141 cgccgcagcc ggctggcggt gaagatcgcg cacagctcct cgacggcggc gtcgaagacc
     4201 tcgttgacca ccacgtagtc gaactcggcg tagtgcgaca tctcctcgcg cgccgccgcc
     4261 agccgccgcg cgatcacttc ctcgctgtcc tgcccccgat ggcgcatgcg ctgctgcagc
     4321 gcctcgcgcg agggcggcag gatgaacacg ctcaccgcgt ccgccacctt ggcccgcacc
     4381 tgcgccgcgc cctgccagtc gatctccagc agcacgtcct gcccggccgc cagctgcggc
     4441 tcgaccgact gccgcgcggt gcccttccag tcgccgtgca cgcgcgcgtg ttcgaagaag
     4501 tcgccggcgg cgaccatcgc ctcgaactcg cccgcgctga cgaagtggta atgctcggcg
     4561 tgccgctcgc ccgggcgcgg cgcgcgcgag gtgaacgaga ccgacaggcg gatgttggga
     4621 tcgcgggcga ggcaggcgtt gaccaggctc gatttcccgg cgccggaggg cgcggcgacg
     4681 atgaacagga tcccgcgggt ggcagcgtcc gcactcatgg ggtcactcga tgttctggat
     4741 ctgctcgcgg acctggtcga tcagcacctt cagctcgatc gccgcgcgcg aggtgcgcgc
     4801 gtcgaccgac ttcgagccga gcgtgttggc ctcgcggttg aattcctgca gcaggaaatc
     4861 cagccggcgc ccgaccggtt ccttctggac cagcacgcgg cgcagctcgg cgacgtggct
     4921 gtcgaggcga tcgagctcct cgtccacgtc gagcttctgc agccacagca ccagctcctg
     4981 ttcgacccgg gccgggtcgg ccggcgtcgc cagctcggcc agccgcgcct cgagtttctg
     5041 ccgctggccg gcgcggatgg ccggaatgag cgtgcgcacg tcggcggcga tgccggcgac
     5101 ggcgtcgatg cgctcgcgga tgccggcggc gagcttggcg ccctcgcgct cgcgcgcggc
     5161 gacgaagccg tcgagcactt cgccgagcag cgccagcgcc tcggcctgca gcgcggccgc
     5221 atccgcgccg ccgccctgca gcacgccggg gtacgccagc aaatcggtga agccgacctg
     5281 catggccggg aagcgcgcct gcagcgccgc cgcgagcccc gccagctgct cgacgcggcc
     5341 cgcatcgagc ctcggcgcct caccgccctc cggggcgcgc aggcgcacgg tcgcgtcgag
     5401 cttgccgcgc gaaacgcgcg aggcgatgcg ttcccgcaag gccggttcca gcgcccgcaa
     5461 ctcctcgggc aggcgcacgc cgatctccag gaagcggtgg ttgaccgcac gcaactcgca
     5521 gccgagcgtg ccccacgcgg tggcgcgctc gccggaggcg aaggcggtca tgctgcggat
     5581 catcatcgac tcctcgatcg gggcggcagt atgccattgc cgctcggcgc gactgtccgt
     5641 cggcgggcgc cggccatcgc gggttcgacg ctggaggccg ccgctccgct acactgcccc
     5701 gccgttccgg gcgcaccatc atggacaccc cgctccgccc cagcggccgc cttccggcgc
     5761 agttgcgccc gatcacgctc acccgcggct tcacgcgcca tgccgaaggc tcggtgctgg
     5821 tctgcttcgg cgagacgcgc gtgctgtgca ccgccaccat cgacaacaag gtgccggcct
     5881 tcctgcgcgg caagggcgag ggctgggtga cggccgaata cggcatgctg ccgcgcgcca
     5941 cccatacccg cagcgaccgc gaggccgccc gcggcaagca gggcggacga acgctggaga
     6001 tccagcgcct gatcgggcgc gcgctgcgcg cctgcgtcga tcgcagcgcg ctcggcgagc
     6061 gcacgatcac cctcgactgc gacgtcctgc aggccgacgg gggcacccgc accgcggcga
     6121 tcaccggcgc ctacgtggcg ctggtcgacg cggtgcgctg gctggtggcg cgccgcgaga
     6181 tcgctccccg gcccggccgc gatcccatcg tcggcgccgt cgccgcggtg tcggtcggca
     6241 tctggcgcgg cgtgccggtg ctcgacctcg actatgccga ggacagcgcc tgcgacaccg
     6301 acatgaatgt cgtcatgaac gatggcggcg gcttcatcga actgcagggc accgccgaag
     6361 gccacgcgtt ccgccgcgac gaactcgacg cgctgctggc gctggccgaa gacggctgcc
     6421 gcgaactgtt cgcgctgcag caggcggcgc tggcgcagcc gctggcctga acacgccggt
     6481 gaagctcgtc ctcgccagcg gcaacgccgg caagttgcgc gaactgcggg aactgctcgc
     6541 cggcgccggc ttcgaattgc acgcgcagtc ggaattcggc gtcggtgaca tcgacgaaac
     6601 cggcctcacc ttcgtcgaga acgcgctgct caaggcccgc cacgccgcgc gcgccaccgg
     6661 cctgccggcg ctggccgacg attcgggcct gtgcgtcgat gcgctcggcg gcgcgccggg
     6721 cctgcgttcg gcgcgctatg ccggcgtgca cggggactcc cgcgccaaca tcgccaggct
     6781 gctcgacgcc ctgcgcgacg tcccggacga gcggcgcacg gcgcacttcc acgcggcgat
     6841 cgtgctgctc cggcaccccg acgacccccg ccccctgatc gccgagggca gctggcacgg
     6901 ccgcatcctg cctgccccgc gcggcgaggc aggcttcggc tacgacccgg tgttcttcga
     6961 tcccg
//
LOCUS       DATIQC010000238         4817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_404172, whole genome shotgun sequence.
ACCESSION   DATIQC010000238 DATIQC010000000
VERSION     DATIQC010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4817
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404172"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /gene="ribH"
                     /locus_tag="VLM17_05020"
     CDS             <1..383
                     /gene="ribH"
                     /locus_tag="VLM17_05020"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HSR64952.1"
                     /translation="ALVAGARKVFADHGVQADAIDVVRVPGAWELPMVAAELAAAGRH
                     AAILALGCVVRGDTRHYEHVADRCADGLMRVSLDHRVPVCNGVLAVERHEDAEARAGG
                     RHGNKGEEAALVAIEMANLQEQLP"
     gene            380..844
                     /gene="nusB"
                     /locus_tag="VLM17_05025"
     CDS             380..844
                     /gene="nusB"
                     /locus_tag="VLM17_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HSR64953.1"
                     /translation="MNRPRRPDGVDPVLRSRARRRALQAVYAWQISGGSAQQVIAQFA
                     HEQAREQADLAYFEDLVRGVMQHRDELDTALAAFIDREVEQVDAVERAALRIAAYELR
                     HRPDVPYRVVINEAIDSTKRFGSEHGHTYVNGVLDHAAAAWREVEFNAGRGR"
     gene            896..1843
                     /gene="thiL"
                     /locus_tag="VLM17_05030"
     CDS             896..1843
                     /gene="thiL"
                     /locus_tag="VLM17_05030"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005925283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HSR64954.1"
                     /translation="MAEFDLIARIQARATRRDDVVLGIGDDAALLRVPRDRLLVVATD
                     TLNADVHFPEDTLPDALGWKALAVNLSDLAAMGATPAWCTLSLSLPEGDALWVERFLD
                     GFLALANEHAVALVGGDTTRGPLSVCVTVHGLIEEGRVLARGGARIGDDLWISGTLGD
                     AAAALSQWRAGGAAEPALRRRLDRPVPRLELGRALAGIASACIDVSDGLLADVGHLCA
                     ASGVGAEVQLAALPASPMLAMLFTDETRHVLQAGGGDDYELCFAAAPAKRDAVLRAAR
                     EAGTPVTRIGCIEAGTGVRALLADGGAWRPPQHGYEHFR"
     gene            complement(1922..2509)
                     /locus_tag="VLM17_05035"
     CDS             complement(1922..2509)
                     /locus_tag="VLM17_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008209108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HSR64955.1"
                     /translation="MATKLDRLLGEIGACRLCEAHLPLGPRPVLRAGGDARLLIAGQA
                     PGARVHASGVPWDDASGKRLREWLQLDADVFYDPSRVAIVPMAFCYPGKAGSGDAPPR
                     PECRATWHPRLLPLLPKVELTLLVGQYAQAHFLGDARKANLTGTMRAWRDYLPRYLPL
                     PHPSPRNVAWFKANPWFDGEVLPELRRRVARLVRP"
     gene            complement(2509..3888)
                     /locus_tag="VLM17_05040"
     CDS             complement(2509..3888)
                     /locus_tag="VLM17_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HSR64956.1"
                     /translation="MPLPASLDAALAALLGDGWCTDVATREAHAGDDSRRRAVPDAVA
                     LPAHRDEVVALVRACRAHRIPLVARGAGTGTTGAAVPIDGGVVVSFARMNRILEVRAA
                     DRCAVVEPGVLNGELQQALAAHGLFWPPDPSSADSCTVGGNIATNAGGPRAVKYGATR
                     DNVLGVVAVAGNGELVRCGGAYTKNASGYDLARLIVGSEGTLALVVEATLRLAPRPRA
                     QAGLRAFYRDAASAAAAVSRLMAQPLVPAMLEFMDRSSLALLRHNGSDVPEAGAMLLV
                     EADGDADALPDALAALGAAADGEGLLDMDVAQDGAAHDRLWAARRALSPALRTLAPGK
                     INEDVVVPVSRIPDLVAGVEHLSQACALPIVVFGHAGNGNLHVNLMYHPDDAGETARA
                     QAALPRVFELALDLGGSLSGEHGIGLSKRAFMARAFDAPTLALMRDIKRAFDPDGILN
                     PGKLLPDPP"
     gene            complement(3924..4322)
                     /locus_tag="VLM17_05045"
     CDS             complement(3924..4322)
                     /locus_tag="VLM17_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007968683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HSR64957.1"
                     /translation="MPRTDTLDRRARGAAIEDAARRHLVAAGLRELAANASYRGGELD
                     LVMRDDGGRAPCVVFVEVRYRRSDGFGGGAASVDAGKRRRLLLAAQSFLAAHPALRDA
                     PCRFDVIEASGDPAAPTLRWLRDAFRADDC"
     gene            complement(4309..>4817)
                     /locus_tag="VLM17_05050"
     CDS             complement(4309..>4817)
                     /locus_tag="VLM17_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HSR64958.1"
                     /translation="FRAHLQDRGGSVASVLAVADKPGDLSAALQAAAQARALAPQLAK
                     AGLAGKPRVGTSQLAAGGDARHALDGIAFPSEAWAVRGAPGLPPPASVARTLPTARGA
                     AARLFAFGYDAWRLSAYLDHLAAHADAKLPGATGTLRLDGFGNVLRTPAWSTYDGTGV
                     VPLGDAAH"
BASE COUNT          632 a         1736 c         1852 g          597 t
ORIGIN      
        1 atgcgctggt ggcgggcgcg cgcaaggtgt tcgccgatca cggcgtgcaa gcggacgcga
       61 tcgacgtggt gcgcgtccca ggcgcgtggg aactgccgat ggtcgccgcc gaactcgccg
      121 ccgccggccg ccatgccgcg atcctcgcgc tcggctgcgt ggtgcgcggc gacacccgcc
      181 actacgagca cgtcgccgac cgctgcgccg acgggctgat gcgcgtctcg ctcgaccatc
      241 gggtgccggt gtgcaacggg gtgctcgcgg tggagcggca cgaggacgcg gaagcacgcg
      301 ccggcggccg ccacggcaac aagggcgagg aagccgcgct ggtggcgatc gagatggcga
      361 acctgcagga gcagttgccg tgaacagacc gcgtcgcccc gatggcgtcg atcccgtgct
      421 gcgttcgcgc gcgcgccggc gagcgctgca ggcggtgtat gcctggcaga tctccggtgg
      481 cagcgcgcag caggtgatcg cgcagttcgc ccacgagcag gcgcgcgagc aggccgacct
      541 ggcgtatttc gaggacctgg tgcgcggcgt catgcagcac cgcgacgaac tcgacaccgc
      601 gctcgccgcg ttcatcgacc gcgaggtcga gcaggtcgac gcggtcgagc gcgccgcgct
      661 gcgcatcgcc gcctacgaac tgcgccaccg gcccgacgtg ccttaccgcg tggtcatcaa
      721 cgaggcgatc gactcgacca agcgcttcgg ctccgaacac ggccatacct acgtcaacgg
      781 cgtgctcgat cacgccgccg cggcatggcg cgaggtggaa ttcaacgcgg gacgcggcag
      841 gtagcctgcg ggcggcgttg gggcctgccg tccacgtcgc cgcagggagg aagcgatggc
      901 cgagttcgac ctgatcgccc gcatccaggc ccgcgccacc cgccgcgacg acgtggtgct
      961 cggcatcggc gacgacgccg cgctgctgcg cgtgccgcgc gaccgcctgc tggtcgtcgc
     1021 caccgacacc ctcaacgccg acgtccattt ccccgaggac acgctgcccg acgcgctcgg
     1081 ctggaaggcg ctcgcggtca acctgtccga cctcgccgcg atgggcgcga cgcccgcgtg
     1141 gtgcacgctg tcgctgtcgc tgccggaggg cgatgccctg tgggtggagc gcttcctcga
     1201 cggcttcctc gcattggcga acgagcatgc ggtcgcgctg gtcggcggcg acaccacccg
     1261 cgggccgctg tcggtgtgcg tgaccgtgca cggcctgatc gaggaagggc gcgtgcttgc
     1321 ccgcggcggc gcacgcatcg gcgacgacct gtggatcagc ggcacgctcg gcgatgccgc
     1381 cgccgcgctg tcgcagtggc gcgccggcgg cgcggccgag ccggccctgc gccggcgcct
     1441 cgaccggccg gtgccgcgac tggaactcgg gcgcgcgctc gccggcatcg ccagcgcctg
     1501 catcgacgtg tccgatgggc tgctggccga cgtgggccac ctgtgcgcgg ccagcggcgt
     1561 cggcgcggaa gtccagctcg ccgcgttgcc ggcgtccccc atgctggcga tgctgttcac
     1621 cgacgagacc cgccacgtgc tgcaggcggg cggtggcgac gactacgagc tgtgcttcgc
     1681 cgccgcgccc gcgaaacgcg acgcggtgct gcgggcggcg cgggaggcgg gcacgccggt
     1741 cacgcgcatc gggtgcatcg aagccggcac cggcgtgcgc gcgctgctgg cggacggggg
     1801 tgcatggcgg ccgcctcaac acggctacga gcatttccgc tgagccggcg cggaaccccg
     1861 ttggaaggct cgacggcgta gaaccggctg gcggtgcgcc ggattttccg gcgccgcctg
     1921 cctagggccg caccagccgc gccacgcgcc tgcgcagctc cggcaacacc tcgccgtcga
     1981 accacggatt cgccttgaac cacgcgacgt tgcgcgggct ggggtgtggc agcggcaggt
     2041 agcgcggcag gtagtcgcgc cacgcgcgca tggttccggt gaggttcgcc ttgcgcgcat
     2101 cgccgaggaa atgcgcctgc gcgtactggc cgaccagcag ggtgagttcg accttcggca
     2161 acagcggcag caggcgcggg tgccaggtcg cgcggcattc gggccgcggc ggcgcatcgc
     2221 cggagccggc cttgccggga tagcagaacg ccatcggcac gatggcgacg cgcgagggat
     2281 cgtagaagac gtcggcatcg agctgcagcc attcgcgcag gcgcttgcca ctggcgtcgt
     2341 cccagggcac gccgctggca tggacgcgcg cgcccggcgc ctggccggcg atcagcagcc
     2401 gggcgtcgcc gccggcgcgc aacaccggcc gcgggccgag cgggagatgc gcctcgcaca
     2461 gccggcaggc accgatttcc ccgaggaggc ggtcgagctt ggtcgccact acggcggatc
     2521 gggcagcagc ttgcccgggt tgaggatgcc gtcgggatcg aatgcgcgct tgatgtcgcg
     2581 catcagcgcc agggtcggcg cgtcgaaggc acgcgccatg aaggcgcgct tgctcaggcc
     2641 gatcccgtgt tcgccggaca gcgaaccgcc gaggtcgagc gccagttcga acacccgtgg
     2701 cagcgcggcc tgcgcgcgtg cggtctcgcc ggcatcgtcg gggtggtaca tgaggttgac
     2761 gtgcaggttg ccgttgccgg catggccgaa caccacgatc ggcagcgcgc aggcttgcga
     2821 caggtgttcg acgccggcga ccaggtcggg gatgcgcgac accggcacca ccacgtcctc
     2881 gttgatcttg cccggtgcca gcgtgcgcag cgccggcgac agcgcgcgcc gcgcggccca
     2941 caggcggtcg tgcgccgcgc cgtcctgggc cacgtccatg tcgagcaggc cctcgccatc
     3001 cgcggcggcg ccgagcgcgg cgagcgcgtc gggcagcgcg tcggcgtcgc cgtcggcctc
     3061 gaccagcagc atcgcgcctg cctcgggaac gtcgctgccg ttgtgccgca gcaacgcgag
     3121 gctgctgcga tccatgaact cgagcatcgc cggcaccagc ggttgggcca tgagccgcga
     3181 caccgcggcg gcggcgctgg cggcatcgcg gtagaacgcg cgcagcccgg cctgcgcgcg
     3241 ggggcgcggc gcgagcctga gcgtggcttc caccaccaga gccagcgtgc cctcgctgcc
     3301 gacgatgagg cgggcgaggt cgtagccgct ggcgttcttg gtgtacgcgc cgccgcagcg
     3361 gaccagttcg ccgttgccgg ccaccgccac cacgccgagc acgttgtcgc gggtggcgcc
     3421 gtacttcacc gcgcgcgggc cgccggcatt ggtggcgatg ttgccgccga cggtgcagct
     3481 gtcggcactg gacggatccg gcggccagaa cagaccgtgc gcggccaagg cctgctgcag
     3541 ctctccgttg agcacgccgg gctcgaccac cgcgcagcga tcggccgcgc gcacttcgag
     3601 gatgcggttc atccgcgcga aggacaccac cacgccgccg tcgatgggca ccgccgcgcc
     3661 ggtggtgccg gtgccggcgc cgcgcgcgac caggggaatg cggtgcgcgc ggcaggcgcg
     3721 gacgagggcg acgacctcgt cgcggtgcgc cggcagcgcg accgcgtcgg gcactgcgcg
     3781 gcggcgcgag tcgtcgccgg cgtgggcttc gcgcgtggcc acgtcggtgc accagccgtc
     3841 gccgagcagg gcggcgaggg cggcgtcgag ggaggcaggc agcggcatcg gggcattatc
     3901 gcgcgcgatc gcgcggcgcc tggtcagcaa tcgtcggcgc ggaacgcgtc gcgcagccag
     3961 cgcagcgtcg gcgcagcggg atcgccgctc gcctcgatga cgtcgaagcg gcagggcgcg
     4021 tcgcgcaacg cgggatgcgc ggcgaggaag gactgcgcag ccagcagcag cctgcggcgc
     4081 ttgcccgcgt ccaccgacgc cgcgccgccg ccgaagccgt cgctgcgccg gtaacgcacc
     4141 tcgacgaaga ccacgcaggg cgcgcgtccg ccgtcgtcgc gcatcaccag gtcgagctcg
     4201 ccgccgcggt agctggcgtt cgcggccagt tcgcgcaggc ccgcggcgac gaggtggcgc
     4261 cgcgccgcgt cctcgatggc ggcgccgcgc gcccggcggt cgagcgtgtc agtgcgcggc
     4321 atcgcccagc ggcaccacgc cggtaccgtc gtacgtcgac cacgcgggcg tgcgcaagac
     4381 attgccgaag ccgtccagcc gcaaggtgcc ggtcgcgccc ggcagcttgg cgtcggcgtg
     4441 cgcggcgagg tggtcgaggt aggcggacag gcgccaggcg tcgtagccga aggcgaacag
     4501 gcgcgcagcc gcgccgcgcg cggtcggcag cgtcctggcg acgctggccg gaggcggcag
     4561 gccgggggcg ccgcgcacgg cccaggcctc gctcgggaag gcgatgccgt cgagcgcgtg
     4621 cctggcatcg ccgccggcgg ccagctggga ggtgcccacg cgcggcttgc cggcgagacc
     4681 ggctttcgcc agctgcggcg cgagcgcacg cgcctgcgcg gcggcctgca gcgcggcgga
     4741 caggtcgccc ggcttgtcgg cgacggcgag cacgctcgcc acgctgccgc cgcgatcctg
     4801 caggtgcgcg cggaacg
//
LOCUS       DATIQC010000239         3719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_15924, whole genome shotgun sequence.
ACCESSION   DATIQC010000239 DATIQC010000000
VERSION     DATIQC010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15924"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VLM17_05055"
     CDS             <1..193
                     /locus_tag="VLM17_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008436981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase M28"
                     /protein_id="HSR64959.1"
                     /translation="APQGQHARDAGNATSIVLKGANIDDWFFGVSAASADGWESPVVF
                     PGDAGSFERSPPRADKAAD"
     gene            272..553
                     /locus_tag="VLM17_05060"
     CDS             272..553
                     /locus_tag="VLM17_05060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018973597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64960.1"
                     /translation="MSADAKTPLDHVNDTVAQLKEMRHYSKNNVELLTTQWLLFDGEL
                     SKLRQAERIEALMTRQGELHEALEDEIATLEALAQTLQSPPEEGAGTVH"
     gene            complement(622..2430)
                     /locus_tag="VLM17_05065"
     CDS             complement(622..2430)
                     /locus_tag="VLM17_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017917748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HSR64961.1"
                     /translation="MFRTLALTLAIGAALALPAAPAFAAPSGPATHHATASKAQQLEK
                     LYAQYWEEQLRLNPLQATFQGDPRYNDQLPDFLSADFRARQHAFTQGWLDRVTKIGSA
                     GLSGQDLISYQIFVYDQKMALEGERYPDWMIPINQFYNLANFVVMFGSGTGPQPFRTV
                     KDYDNWLKRASQVPAVFDQAIANMKEGVAHGVVQPKVLMQKVVPQLDAVMKDKPEDTL
                     FWGPVKNMPADFPAADKARLTGEYRKLIADQLMPAYHRLRDYIADDYMPHTRDTVGID
                     ALPDGAAWYAYLARQNTTTDRTPAQIHQLGLDEVARIHGEMQGVMQQVGFKGSLQDFF
                     QFMRTDPRFTFKTEDDLLKHYRGIETQVMAGVPKLFSLTPKSKFEIRPVEAYRAQSSA
                     AGEYNPPSEDGSRPGVFYVNTYDLPSRRSWEAEDLFLHEAIPGHHFQMSLQQELTSMP
                     AFRRFGGENAFAEGWGLYSESLGKDLGMYQDPYEYFGYLQNELWRAIRLVVDTGLHSK
                     GWTREQVIRYMLDNSAVSETDAVAEAERYMAIPGQALAYKSGELKIKELRAKAQQALG
                     PKFDIRAFHAEVLKDGAVPLDVLEGKVDRWIASQQG"
     gene            complement(2562..2658)
                     /gene="ffs"
                     /locus_tag="VLM17_05070"
     ncRNA           complement(2562..2658)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VLM17_05070"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            complement(2855..2947)
                     /locus_tag="VLM17_05075"
     tRNA            complement(2855..2947)
                     /locus_tag="VLM17_05075"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2911..2913),aa:Ser,seq:gga)
     gene            3116..>3719
                     /gene="dnaX"
                     /locus_tag="VLM17_05080"
     CDS             3116..>3719
                     /gene="dnaX"
                     /locus_tag="VLM17_05080"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HSR64962.1"
                     /translation="MSYLVLARKWRPKRFAELVGQEHVVRALTNALESGRVHHAFLFT
                     GTRGVGKTTIARIFAKSLNCERGTSSDPCGECETCRAIDAGRYIDLLEIDAASNTGVD
                     NVRDLIENAQYMPSRGRYKVYLIDEVHMLSKPAFNALLKTLEEPPPHVTFVLATTEPH
                     KLPNTILSRCQRYDFKLVPASRLAKHLTSIFVKEQLAIEPG"
BASE COUNT          579 a         1266 c         1280 g          594 t
ORIGIN      
        1 cgcgccgcaa gggcagcacg cgcgggacgc cggcaacgcc acttccatcg tgctgaaggg
       61 cgccaacatc gacgactggt tcttcggcgt gtccgcggcc agcgccgacg gatgggaaag
      121 cccggtggtg ttcccgggcg atgcgggcag cttcgagcgc tcgccgcccc gggcggacaa
      181 ggccgcggat taaccgcggt tcatcggctt ttcaccgccc cgagaaccgg ccgtcgctac
      241 cgtgcctgcg tccccgatgc aggaggtcgc catgtccgcc gacgccaaga cgccgctgga
      301 ccacgtcaac gacaccgtgg cccagctcaa ggagatgcgc cattactcga agaacaacgt
      361 ggagctgctg accacgcaat ggctgctgtt cgacggcgag ctgtcgaagc tcaggcaggc
      421 cgaacgcatc gaggcgctga tgacccggca gggcgagttg cacgaggcgc tggaggacga
      481 gatcgccacg ctggaagcac tggcgcagac gctgcagtcg ccgccggagg agggcgccgg
      541 cacggtgcac tagcggcgaa ggtcgagcgc cacgaaaaag gccggcttgc gccggccttt
      601 ttttcccgcg tcggcccccg ctcagccctg ctggctggcg atccagcggt ccaccttgcc
      661 ctccagcacg tccagcggca ccgcgccgtc cttcagcact tccgcgtgga acgcgcggat
      721 gtcgaacttg ggaccgagcg cctgctgcgc cttcgcgcgc agctccttga tcttcagctc
      781 gccggacttg tacgccagcg cctggccggg gatggccatg tagcgctcgg cctcggccac
      841 ggcgtcggtc tcgctgacgg cggagttgtc gagcatgtac ctgatcacct gctcgcgggt
      901 ccagcccttg ctgtgcaggc cggtgtcgac gaccaggcgg atcgcgcgcc acagctcgtt
      961 ctgcaggtag ccgaagtact cgtagggatc ctggtacatg cccaggtcct tgccgagcga
     1021 ctcggaatac aggccccagc cttcggcgaa ggcgttctcg ccgccgaagc gacggaacgc
     1081 gggcatcgag gtgagctcct gctgcagcga catctggaag tggtggccgg ggatcgcctc
     1141 gtgcaggaag aggtcttccg cctcccagct gcgacggctc ggcaggtcgt aggtgttgac
     1201 gtagaacacg cccgggcggc tgccgtcctc gctcggcggg ttgtattcgc cggccgccga
     1261 cgactgcgcg cgataggcct cgaccgggcg gatctcgaac ttcgacttcg gcgtgagcga
     1321 gaacagcttc ggcacgcccg ccatcacctg cgtctcgatg ccgcggtagt gcttgagcag
     1381 gtcgtcctcg gtcttgaagg tgaagcgcgg atcggtgcgc atgaactgga agaaatcctg
     1441 cagcgagccc ttgaagccga cctgctgcat cacgccctgc atctcgccgt ggatgcgcgc
     1501 cacctcgtcg aggcccagct ggtggatctg cgccggggtg cggtcggtgg tcgtgttctg
     1561 gcgcgcgagg taggcgtacc aggccgcgcc gtcgggcagc gcgtcgatgc cgaccgtgtc
     1621 gcgcgtgtgc ggcatgtagt cgtcggcgat gtagtcgcgc aggcggtggt aggccggcat
     1681 cagctggtcg gcgatgagct tgcggtactc cccggtcagg cgtgccttgt ccgcggccgg
     1741 aaagtccgcc ggcatgttct tgaccgggcc ccagaacagc gtgtcctcgg gcttgtcctt
     1801 catcacggcg tcgagctgcg gcacgacctt ctgcatcagc accttcggct gcaccacgcc
     1861 gtgggccacg ccttccttca tgttggcgat cgcctggtcg aacaccgccg gcacctgcga
     1921 cgcgcgcttg agccagttgt cgtagtcctt gaccgtcctg aacggctgcg ggcccgtgcc
     1981 cgagccgaac atcacgacga agttggcgag gttgtagaac tggttgatcg ggatcatcca
     2041 gtcgggataa cgctcgcctt ccagcgccat cttctggtcg tagacgaaga tctggtagct
     2101 gatcaggtcc tggcccgaca ggccggcgga gccgatcttc gtgacgcggt cgagccagcc
     2161 ctgcgtgaac gcgtgctgcc tggcgcggaa gtcggcggac aggaagtcag gcagctggtc
     2221 gttgtagcgc gggtcgccct ggaaggtggc ctgcagcggg ttgagccgca gctgttcttc
     2281 ccagtactgc gcgtagagct tctcgagctg ctgcgccttg ctggcggtcg cgtggtgcgt
     2341 ggccggcccg gagggggcgg cgaaggccgg ggcggccggc agcgccagcg cggcgccgat
     2401 ggcgagggtc agggcaagcg tgcggaacat acggcctccg gtggcgggaa aggcggcgag
     2461 cctcgcgcgc gcccggagcg gcggcaatgg gccaaaggtc atccgccggc gcagcgcgcg
     2521 ggccggacgc caggcaccgc caagtggcgc aaatggcgat gaccccgccg actgacctcg
     2581 gcgcccgcat catccgatac cgttgctgcc ttccggccct ggcggggttt tcgaactagc
     2641 gtcgcgaggg gccgacgggg ccaccatagg aactgcgctg cttcagcgca ggggcgcgaa
     2701 ttctagcagc gccgcgatcc gattgcgcgg gatggactcg gcacatccat gtccctcgcc
     2761 cgcgtgcgcg ggcagcctgc ggctgtccaa ccgacgggtt ggtcgtccct ccgccacata
     2821 cgcaaaacgc cccttgcggg gcgcttcgcg tagatggcgg agagagcggg attcgaaccc
     2881 gcgaagcggg gtttagccgc ttacacactt tccaggcgtg ctccttcaac cactcggaca
     2941 cctctccgct ggaacccgcc aggccgcgtc cagccgccgt gcagggccgc aaattctagc
     3001 cgccggccgg ggctggaaca agcaaggggc cgcgtccggc ggccgcgcgg agccggcgtg
     3061 gcacactagc cgtccccgtt gcaggagcgg ccgttcgcgg ccggtcgcgc gctcgatgtc
     3121 ctacctcgtc ctcgcccgca agtggcgccc gaagcgcttc gccgaactgg tcgggcagga
     3181 gcacgtggtg cgcgcgctga ccaacgcgct ggagtcgggg cgggtgcacc acgccttcct
     3241 gttcaccggc acgcgcggcg tcggcaagac cacgatcgcg cgcatcttcg ccaagtcgct
     3301 caattgcgag cgcggcacct ccagcgaccc gtgcggcgag tgcgaaacct gcagggcgat
     3361 cgacgccggc cgctacatcg acctgctcga gatcgacgcc gcctccaaca ccggcgtcga
     3421 caacgtccgc gacctgatcg agaacgcgca gtacatgccc tcgcgcgggc gctacaaggt
     3481 gtacctcatc gacgaggtgc acatgctctc gaagcccgcg ttcaacgcgc tgctgaagac
     3541 gctcgaggag ccgccgccgc acgtgacctt cgtgctcgcg accaccgagc cgcacaagct
     3601 gcccaacacg atcctgtcgc gctgccagcg ctacgacttc aagctggtcc cggcgtcgcg
     3661 gctcgccaag cacctcacga gcatcttcgt gaaggagcag ctcgcgatcg agccgggcg
//
LOCUS       DATIQC010000240         2425 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_475517, whole genome shotgun sequence.
ACCESSION   DATIQC010000240 DATIQC010000000
VERSION     DATIQC010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475517"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VLM17_05085"
     CDS             <1..189
                     /locus_tag="VLM17_05085"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR64963.1"
                     /translation="DRQQELFRPFTRLGVREDGVSSGLGLSLARQIVLNAGGNLWYED
                     RAGGGACFVIELPALAVA"
     gene            complement(240..617)
                     /locus_tag="VLM17_05090"
     CDS             complement(240..617)
                     /locus_tag="VLM17_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64964.1"
                     /translation="MSRLNQWNDQALRLAGQVGDTIKDAMPDRALRWVETGAALGALK
                     TGSRTAGKFVRRHPVALAAAAAGAGLLWYTMRQRAKRKADGASHDEGEAIEGRARRVE
                     ARRARSGRRAASADLDTQASAQS"
     gene            complement(740..>2425)
                     /gene="hrpB"
                     /locus_tag="VLM17_05095"
     CDS             complement(740..>2425)
                     /gene="hrpB"
                     /locus_tag="VLM17_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011050223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HSR64965.1"
                     /translation="LPGVRVVVAAGLAREPRYDPNSGFSRLEVVPIAQASADQRAGRA
                     GRIAAGWTLRLWPESQRLEPQRHAEIAQVELAGLALELAAWGNDALRFVDPPPPGALA
                     AARELLQRLGALDAAHAITPSGRRMLALGTHPRLAAMLLAPRDAGERALACDLAALLE
                     ARDPLRARGGSPRSDAIADRWQALAAFRAGRAPVEASRSALASIDAAAKQWRRRLRLD
                     GAAPAAAPAHLLGDVLLHAFPDRIARQHPSDPRRYQLANGRMARLFSNGASDDSALYG
                     EPWIVASELRFERQDALLLRGAPLDEARLQREFPERFVEEDTVRWDAVRQGLVAQRER
                     RFDGIVLASRPAGRVEPALAARALTDAVRALGLDALPWTENLAQWRARVRCLRAWMPE
                     LGLPDLGDDALLATLDDWLLPAFTGKTRLDALDEPALGEALKGRLDWAQRQRVDALAP
                     ARIAVPSGQERRIEYAFDAHEGAHPPVLAVKLQELFGLAETPRIVEGRVPLTLHLLSP
                     AGRPLQVTQDLRGFWERTYPEVKKEMKGRYPRHPWPDDPWAATATHRAKPRGT"
BASE COUNT          290 a          898 c          928 g          309 t
ORIGIN      
        1 gaccggcaac aggagctgtt ccgtcccttc acccggctgg gcgtgcgcga ggacggcgtg
       61 tcgagcggcc tgggcctgtc gctggcgcgg cagatcgtgc tcaacgccgg cggcaacctc
      121 tggtacgagg accgcgctgg cggcggcgcc tgcttcgtga tcgaactgcc ggcgctcgcg
      181 gtcgcctgat ccgcgccggg tgcggcgcgc cccaggtcac actcccgtgc gaacgcgcct
      241 cagctctgcg cgctggcctg ggtgtcgagg tccgcgctcg cggcgcgacg gccagaccgt
      301 gcgcgacgcg cctccacgcg acgcgcgcgt ccctcgatgg cctcgccctc gtcgtgcgac
      361 gccccgtcgg ccttgcgctt cgcacgctgg cgcatcgtgt accagagcag gcccgcgccc
      421 gccgcggcgg cggccagcgc gaccggatgc cggcgcacga acttgcccgc cgtgcgcgag
      481 ccggtcttca gcgcgccgag cgcggcgccg gtctccaccc agcgcaatgc gcggtcgggc
      541 atcgcgtcct tgatcgtgtc gccgacctgg ccggcgaggc ggagcgcctg gtcattccac
      601 tggttgagcc tggacatcgc cgtttccttc gcgctgcggg gatggcggca gtctcggcaa
      661 gccgccgttg atccggcgtg agcgacgcgg cgcggggctg aacggaacga acgacgcaag
      721 aaggcgtgcg tcgcgcgcct caggtgccgc gcggcttggc gcgatgcgtc gcggtcgccg
      781 cccagggatc gtccggccac ggatggcgcg gatagcggcc cttcatttcc ttcttcactt
      841 ccggataggt gcgctcccag aagccgcgca ggtcctgcgt cacctgcagc gggcgccccg
      901 ccggcgacag caggtgcagg gtcagcggca cgcggccctc cacgatgcgc ggggtttccg
      961 ccaggccgaa cagttcctgc agtttcaccg ccagcaccgg cggatgggcg ccttcgtgcg
     1021 cgtcgaacgc atactcgatg cgtcgctcct gacccgacgg caccgcgatg cgcgcgggcg
     1081 ccagcgcgtc gacgcgctgg cgctgcgccc agtcgagccg ccccttcagc gcctcgccga
     1141 gcgcgggttc gtcgagggcg tcgagccgcg tcttcccggt gaacgccggc agcagccagt
     1201 cgtcgagcgt ggcgagcagc gcgtcgtcgc ccagatccgg caggccgagc tcgggcatcc
     1261 atgcgcgcag gcagcgcacg cgcgcgcgcc attgcgcgag gttttccgtc cagggcagcg
     1321 cgtcgaggcc gagcgcgcgc accgcatcgg tgagtgcgcg cgcggccagc gccggctcga
     1381 cgcggccggc cggccggctg gcgagcacga tgccgtcgaa gcggcgttcg cgctgggcga
     1441 ccagcccctg gcgcaccgcg tcccagcgga ccgtgtcctc ctcgacgaag cgctcgggaa
     1501 actcgcgctg caggcgcgcc tcgtccagcg gcgcgccgcg caacagcagc gcgtcctggc
     1561 gttcgaagcg caactcgctg gcgacgatcc agggctctcc atacagcgcg ctgtcgtcgc
     1621 tcgcgccgtt cgagaacagg cgtgccatgc gcccgttggc cagctggtag cggcgcgggt
     1681 cggagggatg ctggcgggcg atgcggtcgg ggaaggcgtg cagcagcacg tcgccgagca
     1741 ggtgcgcggg cgcagcggcg ggcgccgccc cgtcgaggcg caggcggcgt cgccactgct
     1801 tcgccgcggc gtcgatcgac gccagcgcgc tgcggctggc ctcgaccggc gcgcggccgg
     1861 cgcggaacgc ggcgagggcc tgccagcggt cggcgatggc atcgctgcgc gggctcccgc
     1921 cgcgtgcacg cagcggatcg cgcgcttcga gcagcgcggc gaggtcgcag gcgagcgcgc
     1981 gttcgccggc gtcgcgcggg gccagcagca tggcggcgag gcgcggatgg gtgccgagcg
     2041 cgagcatgcg ccgcccggac ggggtgatcg cgtgcgccgc gtccagcgcg ccgaggcgct
     2101 gcagcagctc gcgcgcggcg gcgagcgcgc cgggcggcgg cggatcgacg aaacgcagcg
     2161 catcgttgcc ccaggccgcg agttccagcg ccaggccggc gagttcgacc tgcgcgatct
     2221 ccgcgtgccg ctgcggttcc agccgttgcg attccggcca caggcgcagc gtccaaccgg
     2281 cggcgatgcg gccggcgcga cccgcgcgct ggtcggccga ggcctgcgcg atcggcacca
     2341 cctccagccg cgagaagccg gaattggggt cgtagcgcgg ttcgcgcgcg aggccggcgg
     2401 cgacgaccac gcgcacgccc ggcag
//
LOCUS       DATIQC010000241         3169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_581340, whole genome shotgun sequence.
ACCESSION   DATIQC010000241 DATIQC010000000
VERSION     DATIQC010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581340"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1144)
                     /locus_tag="VLM17_05100"
     CDS             complement(<1..1144)
                     /locus_tag="VLM17_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64966.1"
                     /translation="MAKIALDLAPATALPRRFLLSMPWWGIAAGLLLLVDGDAALRSR
                     WAPQTLALVHAVTLGLLGNAMCGSLLQFLPAALGARPWGGRKAGTALHVLLNAGALSL
                     VLGLRTMRPALLLAAACTLALAFVLLAAIVLPGVLRASGPLLVRAGIAQAVLAALAAA
                     GLGVAMAHGLQGRGLPAWPWINVHAGVGLVGWVLVLVASVAGVVMPMFQGTRTVPARA
                     QAAWLALVALVLVVGAFSGEGLREAVLRHGGAAGVGAAVLAGLWLQARREHTRNPWLL
                     RSWRLGFGALLAAAVALASGAPAPWIGVLALGIGFPALVVGMQLEIVAFLGWIDLYRG
                     IPRGTRLPAVQKLLADDDKRRVFMLQLLAAAALPAACAWPPLARVAG"
     gene            complement(1163..1399)
                     /locus_tag="VLM17_05105"
     CDS             complement(1163..1399)
                     /locus_tag="VLM17_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2249 domain-containing protein"
                     /protein_id="HSR64967.1"
                     /translation="MAEPATDCGPVLDLRALPAPEPLVRALAAADALAPGARLEVLTP
                     MLPLPLLQQLLARGLRANAELLADGSARVCVRRP"
     gene            complement(1392..1526)
                     /locus_tag="VLM17_05110"
     CDS             complement(1392..1526)
                     /locus_tag="VLM17_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64968.1"
                     /translation="MSGSDCGELDLGPASPGGPLEALDAAGIDGRLDDAGDGEAVAGG
                     "
     gene            complement(1600..2805)
                     /locus_tag="VLM17_05115"
     CDS             complement(1600..2805)
                     /locus_tag="VLM17_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate export family protein"
                     /protein_id="HSR64969.1"
                     /translation="MRLPLALLPLAIAATSLPVHAADAAPAVGPVSFEWNLRLRHEHV
                     GDDAFADDADATTLRLRAGVRFKLDNGFNALLEGEGIADAGDAYNSGANGRTTRPAIT
                     DPEGAELNQAFVGWKDKAFGVAVGRQRLLFDNQRWIGNSGWRQNEQTFDAVSADWKIA
                     GDWSARYAYLGRVHRVAGDNALDAKARQRNLDSHLAELAWKHGVAQVSGYAWLHEDQD
                     VASASTGTFGVRALADLVRDGNGFALALELARQRDYANNPLRFSHRYWLVEPAYTLRG
                     TTLRAGWEHLGGDGTHALQTPLATLHAFNGWADKFTTTPAAGLEDRYLGAGGKLGAAK
                     QYDWQVAWHDYRADTGAAHYGSEWNGSFGFPVAKGVRGLAKFAGYRADAFAHDTFKAW
                     LQLEWSGAR"
BASE COUNT          464 a         1188 c         1148 g          369 t
ORIGIN      
        1 gcccggccac gcgcgccagc ggcggccacg cgcaggcggc gggcagcgcg gcggcggcga
       61 gcagctgcag catgaacacc cgccgcttgt cgtcgtccgc cagcagtttc tgcaccgccg
      121 gcaggcgcgt gccgcgcggg atgccgcgat acaggtcgat ccagccgagg aaggcgacga
      181 tctccagctg catgccgacc accagtgcgg gaaagccgat gcccagcgcc agcacgccga
      241 tccagggggc cggcgcgccg gacgcgagcg cgaccgcggc cgcgagcagc gcgccgaacc
      301 cgagccgcca ggagcgcagc agccacgggt tgcgggtgtg ttcgcgccgc gcctgcagcc
      361 acaagccggc gagcactgcc gcgccgacgc cggccgcgcc gccatggcgc agcacggcct
      421 cgcgcaggcc ttcgccggag aaggcgccca ccacaagcac cagggcgacc agcgccagcc
      481 acgcggcctg ggcgcgcgca gggaccgtgc gcgtaccctg gaacatcggc atgaccaccc
      541 ccgccacgct cgccaccagc accagcaccc agccgaccag gccgacgccc gcgtgcacgt
      601 tgatccaggg ccacgccggc aatcccctgc cctgcaggcc gtgcgccatc gccacgccga
      661 ggccggcggc ggcgagcgcg gcgaggaccg cctgcgcgat gcccgcgcgc accagcagcg
      721 gcccgctcgc gcgcagcacg cccggcagca cgatggcggc gagcagcacg aaggcgagtg
      781 cgagcgtgca ggccgccgcc agcagcaacg ccgggcgcat ggtgcgcagc cccagcacca
      841 gcgacagcgc gccggcattg agcagcacgt gcaaggcagt accggccttg cgtccacccc
      901 acggccgcgc gcccagcgcc gccggcagga actgcagcag gctgccgcac atcgcgttgc
      961 cgagcaggcc gagggtgacc gcgtgcacga gcgccagggt ctgcggcgcc cagcgcgagc
     1021 gcagcgcggc atcgccgtcg acgagcagca gcaacccggc ggcgatgccc caccacggca
     1081 tggaaagcag gaagcgccgc ggcaacgcgg tcgcgggcgc gaggtcgagc gcgatcttcg
     1141 ccaagacggc cgcgcgtggc gatcagggcc gccgcacgca cacgcgcgcg ctgccgtcgg
     1201 cgagcagctc ggcgttcgcg cgcaggccgc gcgcgagcag ctgctgcaac agcggcaacg
     1261 gcagcatcgg cgtgagcacc tcgaggcggg cgcccggcgc gagcgcgtcg gccgcggcca
     1321 gcgcgcgcac cagcggttcg ggtgccggca gcgcacgcag gtcgagcacg ggcccgcagt
     1381 cggtcgcggg ctcagccacc ggcgacggcc tccccgtcgc cggcatcgtc caggcggccg
     1441 tcgatgccgg ccgcatccag cgcttcaagc gggccacccg gcgatgccgg gccgaggtcg
     1501 agttcgccgc agtccgatcc gctcatcgca tgcactccgc gaaagtaccg gcacaggaaa
     1561 ccatgcacgc gccgccgcgg cgctgaccca ggtcaagcct cagcgcgcgc cgctccactc
     1621 cagctgcagc caggccttga aggtgtcgtg cgcgaacgca tcggcccggt acccggcgaa
     1681 cttggccagc ccgcgcacgc ccttcgccac ggggaacccg aacgagccgt tccactcgct
     1741 tccgtagtgc gcggcgcccg tgtcggcacg gtagtcgtgc caggcgacct gccagtcgta
     1801 ctgcttcgcg gcgccgagct tgccgcccgc gccgaggtag cgatcctcca gccccgcggc
     1861 cggcgtggtg gtgaacttgt cggcccagcc gttgaaggcg tgcagcgtgg cgagcggcgt
     1921 ctgcagcgcg tgcgtgccgt cgccgcccag gtgttcccat cccgcgcgca gggtggtgcc
     1981 gcggagggtg tacgcgggct cgacgagcca gtagcggtgc gagaagcgca gcgggttgtt
     2041 ggcgtagtcg cgctgccgcg ccagctccag cgcgagggcg aagccgttgc cgtcgcgcac
     2101 caggtcggcg agcgcgcgca cgccgaaggt tccggtggat gcgctcgcga cgtcctggtc
     2161 ctcgtgcagc caggcgtagc cggagacctg cgcgacgccg tgcttccacg ccagttccgc
     2221 gaggtggctg tcgaggttgc gctggcgcgc cttcgcgtcg agcgcgttgt cgccggcgac
     2281 gcggtgcacg cggccgaggt acgcgtagcg ggcgctccag tcgccggcga tcttccagtc
     2341 ggcggacacc gcatcgaagg tctgctcgtt ctggcgccag ccgctgttgc cgatccagcg
     2401 ctggttgtcg aacagcagcc gctggcggcc gacggccacg ccgaacgcct tgtccttcca
     2461 gccgacgaaa gcctggttca gttcggcgcc ttccgggtcg gtgatcgccg ggcgcgtggt
     2521 gcggccgttg gcgccgctgt tgtaggcgtc gccggcatcg gcgatgccct cgccttcgag
     2581 cagcgcgttg aagccgttgt ccagcttgaa ccgcacgccg gcgcgcaggc gcagcgtggt
     2641 ggcatcggca tcgtcggcga acgcatcgtc cccgacgtgc tcgtggcgca ggcgcaggtt
     2701 ccattcgaag gacaccggcc cgaccgcggg cgcggcatcg gcggcgtgga cgggcaggct
     2761 ggtggccgcg atggcgagcg gcagcagggc gagcgggagg cgcatggcgc ggttcctgtt
     2821 ggaaagatgg cgcacagcct cgggaggcgc accccacgcg gccttgaccc agatcaaccg
     2881 cgcgtccgcc ggccggcgca tttcacgccg atttgatcca ggtcagatgg gcggcaaaag
     2941 gcccggcgca gactgcggcc atcggaaaag cgcatcgcct tttcccaccg cttcccgctc
     3001 aagaaaccgg agtagctcca gatgaaaacc gctctgtacc gtaccgccgc ggcgatcgcc
     3061 gcaaccgcgc tgctggccct gctgttcggc ttcgcgcgca gccaggccgc atcggctagc
     3121 ctctcccagc cggtcgccca ggcccagcag gggtcggcga tgtctgtcc
//
LOCUS       DATIQC010000242         3106 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_404407, whole genome shotgun sequence.
ACCESSION   DATIQC010000242 DATIQC010000000
VERSION     DATIQC010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404407"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..709
                     /locus_tag="VLM17_05120"
     CDS             <1..709
                     /locus_tag="VLM17_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HSR64970.1"
                     /translation="LDLDARDPRRVIAKLKLKADIPVKVDTRAKLSITGLTGVPFIQL
                     TGGSPRAQRLVDVDHRDAPVIRTEASALQNIADTANRLVARLDEVLSEENVKRINDTL
                     AHLDAATGAIAGQRDDLRALIVNARQASEQLTTTLATTNRAVGDVDRELVDKLPALVG
                     KLDSTLAHLDSAAQNANGILGENRASIGSGLSQLGPTLSELRGLVRDLHHVSDRLEGN
                     PARYLLGRDSPKEFEPK"
     gene            823..1362
                     /locus_tag="VLM17_05125"
     CDS             823..1362
                     /locus_tag="VLM17_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HSR64971.1"
                     /translation="MTVYSPEPAVQVDPAWPAADWQLTIDRPEAGRLLDGTRIAVRPS
                     PGELQVYKGASWARSPADQLEDAVLRSLEDSGRLRGVARQGAGIAADYALAMELRRFD
                     SDYAGAPLPTAVVEVSAKLISGDRSVVASRVFVQRMRAPATDAAAVSDTLGRALAQVA
                     HDIDGWVLASGNAARASKR"
     gene            complement(1364..1957)
                     /locus_tag="VLM17_05130"
     CDS             complement(1364..1957)
                     /locus_tag="VLM17_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017174443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate-dependent dioxygenase AlkB"
                     /protein_id="HSR64972.1"
                     /translation="MSLQPLPLPGAELALDPRWLSAPAADALLATLLAQVPWSVHRIR
                     LFGREVASPRLSCWIGEPDAAYTYSGTRFAPHPWPPALLALRARLARELDCDFNSVLA
                     NLYRDGRDAMGWHSDDEPELGAAPLIASLSLGAVRRFVLKSRQPPVQRLVLELPHGSL
                     LVMGGATQRHYRHALPRTARPLGARINLTFRNVRGAG"
     gene            2118..>3106
                     /locus_tag="VLM17_05135"
     CDS             2118..>3106
                     /locus_tag="VLM17_05135"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008576966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSR64973.1"
                     /translation="MNATAPEIERDVMEYDVVTVGAGPAGLAFAIRLKQLDPGISVCV
                     IEKGATVGAHILSGAVIEPGPLDALLPGWRDAPPPICVPAGEDEFWLLSKSGGRRLPV
                     PPGMKNHGNFIDSLGALCAWLAPQAEALGVEIYPGFAAAAALHDDDGRVAGVRIGDMG
                     VAKDGAHKPGFTAGIDIRAKVTVLAEGARGSLSKQLIKRFGLADGRDPQAYSIGIKEL
                     WQVPAGRVTPGRIVHSVGWPADNHTYGGSFLYHLDGDRVALGYVSGLDYADPGYMPWE
                     AFQQWKNHPTVAPLLEGGSIVSAGARAIVTGGWQSLPRLEMPGALLIGDAAGLL"
BASE COUNT          462 a         1136 c         1124 g          384 t
ORIGIN      
        1 cctggacctc gacgcgcgcg acccgcgccg cgtcatcgcc aagctcaagc tcaaggccga
       61 catcccggtg aaggtcgaca cccgcgcgaa gctgtcgatc accggcctca ccggcgtgcc
      121 cttcatccag ctcaccggcg gcagccctcg ggcgcagcgg ctggtcgacg tcgaccatcg
      181 cgacgcgccg gtgatccgca ccgaagcctc cgcgctgcag aacatcgccg acaccgccaa
      241 ccgcctggtc gcgcggctgg acgaagtcct gagcgaggag aacgtcaagc gcatcaacga
      301 caccctcgcc cacctcgacg ccgccaccgg cgcgatcgcc ggccagcgcg acgacctgcg
      361 cgcgctgatc gtcaacgcgc gccaggccag cgagcagctg accaccacgc tcgccaccac
      421 caaccgcgcg gtgggcgacg tcgaccgcga actggtcgac aagctgccgg cgctggtcgg
      481 caagctcgat tcgacgctgg cgcacctcga ctccgcggcg cagaacgcca acggcatcct
      541 cggcgagaac cgggcgtcca tcggtagcgg cctgtcgcag ctgggcccca cgctgtccga
      601 actgcgcggc ttggtgcgcg acctgcacca cgtcagcgac cgcctcgagg gcaatcccgc
      661 gcgctacctg ctcgggcgcg actcacccaa ggagttcgaa ccgaaatgac ggcagacgcg
      721 aatcggaaag cgggagccgg caggtggctg gcgggcgcgc tgtgcggcgt ggtggcaatc
      781 gcggcctccg gctgctcgat cctcggcggc agcaaggaac cgatgacggt gtactccccc
      841 gagccggcgg tgcaggtcga ccccgcctgg cccgccgccg actggcagct cacgatcgac
      901 cgccccgagg ccgggcgact gctcgacggc acccgcatcg cggtgcgccc gagcccgggc
      961 gagctgcagg tctacaaggg cgcgagctgg gcgcgcagcc cggccgacca gctcgaggat
     1021 gcggtgctgc gctcgctgga ggattcgggc aggttgcgcg gcgtcgcgcg ccagggcgcc
     1081 gggatcgccg ccgactacgc gctcgcgatg gagctgcggc gtttcgattc cgactatgcc
     1141 ggcgccccgc tcccgaccgc ggtggtggaa gtcagcgcca aactcatttc gggcgaccgc
     1201 tcggtggtgg ccagccgcgt cttcgtgcag cgcatgcggg cgccggcgac cgatgccgcc
     1261 gcggtctcgg acacgctggg ccgcgcgctg gcgcaggtcg cgcacgacat cgacgggtgg
     1321 gtgctggcca gcggcaacgc ggcgcgggcg tcgaaacgct gactcacccc gcgccgcgga
     1381 cgttgcggaa ggtgaggttg atgcgcgccc cgagcggtcg cgccgtgcgc ggcaatgcgt
     1441 gccggtaatg gcgctgggtc gctccgccca tcaccagcaa actgccgtgc ggcagctcga
     1501 ggacgagccg ctgtaccggt ggctggcgtg acttgagcac gaagcgccgc accgccccca
     1561 ggctcagcga ggcgatcagc ggcgccgcgc cgagttcggg ctcgtcgtcg ctgtgccagc
     1621 ccatcgcgtc gcggccgtcg cggtagaggt tggccagcac gctgttgaag tcgcaatcga
     1681 gttcgcgcgc cagacgcgcg cgcagcgcca gcagcgcggg cggccaggga tgcggcgcga
     1741 agcgcgtgcc cgaataggtg taggccgcat ccggttcgcc gatccagcac gacagccgcg
     1801 gcgaggcgac ctcgcgcccg aacaggcgga tgcggtggac gctccagggc acctgcgcca
     1861 gcagcgtggc gagcagcgcg tcggcagcgg gcgcggacag ccagcgcgga tccagcgcga
     1921 gttcggcccc aggcagcggc agcggttgca gcgacatgcc gacaccctac ggcgccgcgc
     1981 cggcgccggc catccgcggg atgcgatccg gcggtgcccg gggcgcgcgc atgcccggtc
     2041 gggcgccccg cttccgccgc ccatttgccg cccccggcgc aaaccgggga aaatcgccgg
     2101 atgtccggga ggaacgcatg aacgcaaccg cgcctgagat cgaacgcgac gtgatggagt
     2161 acgacgtggt caccgtcggc gcgggcccgg ccggactggc cttcgcgatc cggctcaagc
     2221 agctggatcc cggcatcagc gtctgcgtca tcgaaaaggg cgcgacggtc ggcgcgcaca
     2281 tcctgtccgg cgcggtgatc gagcccggtc cgctggacgc gctgctgccc ggctggcgcg
     2341 acgcgccgcc gccgatctgc gttcccgccg gcgaggatga gttctggctg ctgtcgaagt
     2401 cgggcggccg ccggctgccg gtgccgccgg gcatgaagaa ccacggcaac ttcatcgaca
     2461 gcctcggcgc gctgtgcgcg tggctggcgc cgcaggccga ggcgctgggc gtcgagatct
     2521 atccgggctt cgccgccgcg gcggcgctgc acgacgacga cggccgcgtg gccggcgtgc
     2581 gcatcggcga catgggcgtg gccaaggacg gcgcgcacaa gccgggcttc accgccggca
     2641 tcgacatccg cgcgaaggtc accgtgctcg ccgagggcgc gcgcggcagc ctcagcaagc
     2701 agctcatcaa gcgcttcgga ctcgcagacg ggcgggaccc gcaggcctat tcgatcggca
     2761 tcaaggagct gtggcaggtg ccggccggac gcgtgacgcc gggcaggatc gtgcattcgg
     2821 ttggctggcc cgccgacaac cacacctacg gcggcagctt cctctaccac ctggacggcg
     2881 accgcgtcgc gctcggctac gtcagcgggc tcgactacgc cgatcccggc tacatgccgt
     2941 gggaagcgtt ccagcagtgg aagaaccacc ccacggtggc gccgctgctg gaaggcggca
     3001 gcatcgtgtc cgccggcgcg cgcgcgatcg tcaccggcgg ctggcagtcg ctgccccggc
     3061 tcgagatgcc gggcgcgctg ctgatcggcg acgccgccgg cctgct
//
LOCUS       DATIQC010000243         3000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_439738, whole genome shotgun sequence.
ACCESSION   DATIQC010000243 DATIQC010000000
VERSION     DATIQC010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439738"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..1086)
                     /locus_tag="VLM17_05140"
     CDS             complement(40..1086)
                     /locus_tag="VLM17_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HSR64974.1"
                     /translation="MFKKFRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQD
                     RLVGNQRSVAAVGSEAKQMLGRTPGHITTIRPMKDGVIADFTYTEEMLKHFIRKVHKS
                     RFLRPSPRVLVCVPCGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEAR
                     GSMVVDIGGGTTEVAVIALNGIVYSQSVRIGGDRFDEAIIAYVRRHHGMLIGDATAER
                     IKLEIGCAYQQQHVREVEVSGRHLAEGVPKMITINSNDVLEALREPLSGIVAAVKQAL
                     EQTPPELCADVAERGIVLTGGGALLRDLDRLLSEETGLHVQIADDPLTCVARGGGRAL
                     ELVDMHGNEFFAPE"
     gene            1376..2308
                     /locus_tag="VLM17_05145"
     CDS             1376..2308
                     /locus_tag="VLM17_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HSR64975.1"
                     /translation="MSALICGSLAYDTIMVFPDQFKHHILPDKVHILNVSFLVPRMRR
                     EFGGCAGNIAYNLKLLGADPVPMATVGQDFGPYRDYFAELDIRLDQVKVIPELFTAQG
                     FITTDLDNNQITAFHPGAMMRSHENHVRDVAGVSFGIVSPDGREGMLQNAREFADCGI
                     PFIFDPGQAMPLFDGEEFRHFIELADYVVVNDYESNLLQERTGWTAETIASRVRAYII
                     TQGPKGSLIHAGGETLHIPPAHERRITDPTGCGDAYRAGLIFGLMRGDELAVCGRMAS
                     LMGALKIEHPGTQNQRFTWAQFAEEFRQQFGYAL"
     gene            complement(2344..>3000)
                     /locus_tag="VLM17_05150"
     CDS             complement(2344..>3000)
                     /locus_tag="VLM17_05150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HSR64976.1"
                     /translation="GDIAQELHLLTAAQVDVLLDQQKRRRKLFGEILVEEGMLDRTTL
                     EAELAAHQADRAQALSSLEAHLAGHPLQALAEGAIATCAKLVLRILKTQAQFSSLAEA
                     QDLERGHPLCAYVHVDAARPLGVALACDAATATAFACAFLSIPPSACDEALACDALGE
                     LVNVLMGYVVKDALPEDMAYRAQPPTFARPAAALAAQPRTVAVAMTSQLGPFALLVSG
                     "
BASE COUNT          445 a         1074 c         1044 g          437 t
ORIGIN      
        1 tcggggcagg ccatggatgg cctgtccccg aatcgaggat cattccggag cgaagaactc
       61 gttgccgtgc atgtcgacca gctccagcgc gcggccaccg ccccgcgcca cgcaggtcag
      121 cgggtcgtcc gcgatctgca cgtgcaggcc ggtctcctcg ctgagcaggc ggtcgaggtc
      181 gcgcagcagc gcgccgccgc cggtgagcac gatgccgcgc tcggcgacgt ccgcgcacag
      241 ctccggcggg gtctgctcca gcgcctgctt gaccgccgcg acgatccccg acagcggctc
      301 gcgcagcgct tccagcacgt cgttggaatt gatcgtgatc atcttcggca cgccctcggc
      361 gagatggcgg ccggagacct cgacctcgcg cacgtgctgc tgctggtagg cgcagccgat
      421 ctcgagcttg atccgctcgg cggtggcgtc gccgatcagc atgccgtggt ggcggcgcac
      481 gtaggcgatg atcgcctcgt cgaagcggtc gccgccgatg cgcaccgact gcgagtacac
      541 gatgccgttg agcgcgatca ccgcgacctc ggtcgtgccg ccgccgatgt cgacgaccat
      601 cgaaccgcgc gcctcggtca ccggcatgcc ggcgccgatc gccgcggcca tcggttcctc
      661 gatcaggtac acgtcgcggg cgccggcttc ctcggccgac tccttgatcg cgcggcgctc
      721 gacctgggtc gagccgcagg gcacgcacac cagcacgcgc gggctcgggc gcaggaagcg
      781 cgacttgtgc accttgcgga tgaagtgctt gagcatttct tccgtgtagg tgaagtcggc
      841 gatgacgccg tccttcatcg gccggatcgt ggtgatgtgg ccgggggtgc ggccgagcat
      901 ctgcttggcc tcgctgccga ccgcggcgac cgagcgctgg ttgccgacca ggcggtcctg
      961 gcgcaccgcg accaccgacg gttcgttcag gacgatgccc tggccgcgga cgtagatgag
     1021 ggtgttggcc gtgccgaggt cgatcgacag gtcgttggag aacatgccgc ggaacttctt
     1081 gaacatcggg cgcaggtgtc cgtcagggat gcggggcggg cgtcgggccg gggacaatcc
     1141 ggggccacgc gggggaaaaa ccgggggatt gggtagccta gcaacggccc ccaccccata
     1201 caacaacaag cggccggacg gggcgcacaa aacggcgtgg cgcttcgccg ggaaaccgct
     1261 tgcccggccc ggcccgggac atccgggccc ctgccctcgc gcgggatcgg ctggccgctc
     1321 ccggacgcag ccgctaccct agccgccctt tccgcccgcc cgagcgcctc cgcccatgtc
     1381 ggccctgatc tgcggctccc tggcctacga caccatcatg gtgttcccgg accagttcaa
     1441 gcaccacatc ctgccggaca aggtgcacat cctgaacgtg tcgttcctgg tcccgcggat
     1501 gcgccgcgag ttcggcggct gcgccggcaa catcgcctac aacctcaagc tgctcggcgc
     1561 cgatccggtg ccgatggcca cggtcggcca ggacttcggc ccctaccgcg actatttcgc
     1621 cgaactcgac atccgcctgg accaggtcaa ggtcatcccc gagctgttca ccgcgcaggg
     1681 cttcatcacc accgacctcg acaacaacca gatcaccgcc ttccaccccg gcgcgatgat
     1741 gcgcagccac gagaaccacg tgcgcgacgt cgccggcgtc agcttcggca tcgtcagccc
     1801 ggacgggcgc gagggcatgc tgcagaacgc gcgggaattc gccgactgcg gcatcccctt
     1861 catcttcgac ccgggccagg cgatgccgct gttcgacggc gaggagttcc gccacttcat
     1921 cgagctggcc gactacgtgg tcgtcaacga ctacgaatcc aacctgctgc aggagcgcac
     1981 cggctggacc gcggagacca tcgcgtccag ggtccgcgcc tacatcatca cccagggccc
     2041 caaggggtcg ctgatccacg ccggcgggga gacgctgcac atcccgccgg cgcacgagcg
     2101 ccgcatcacc gacccgaccg gctgcggcga cgcctaccgc gccggcctga tcttcggcct
     2161 gatgcgcggc gacgaactgg cggtgtgcgg gcgcatggcc tcgctgatgg gcgcgctgaa
     2221 gatcgagcac ccgggcacgc agaaccagcg cttcacctgg gcgcagttcg ccgaggagtt
     2281 ccggcagcag ttcggctacg cgctgtaggc attcgcgggc ggcggcgcgc gccgcccggc
     2341 gggtcagccg ctgaccagca gcgcgaacgg ccccagctgc gaggtcatcg ccaccgccac
     2401 cgtgcgcggc tgcgcggcca gcgccgcggc ggggcgggcg aaggtcggcg gctgcgcgcg
     2461 gtacgccatg tcctcgggca gcgcgtcctt gaccacgtag cccatcagca cgttgaccag
     2521 ttcgccgagc gcatcgcacg ccagcgcctc gtcgcaggcc gacggcggga tcgacaggaa
     2581 cgcgcaggcg aacgcggtcg cggtggcggc gtcgcaggcg agcgccacgc cgagcgggcg
     2641 cgctgcgtcg acgtgcacgt aggcgcacag cggatggccg cgttccaggt cctgcgcctc
     2701 ggccaggctg gagaactgcg cctgggtctt gaggatgcgc aggacgagct tggcgcaggt
     2761 ggcgatcgcg ccttcggcga gcgcctgcag cggatgcccg gcgaggtgcg cctccagcga
     2821 ggacagcgcc tgcgcgcggt cggcctggtg ggcggcgagc tcggcttcga gggtggtgcg
     2881 gtcgagcatg ccctcctcga ccaggatctc gccgaacagc ttgcgccggc gcttctgctg
     2941 gtccagcagc acgtcgacct gcgcggcggt gagcaggtgc agctcctgcg cgatgtcgcc
//
LOCUS       DATIQC010000244         1892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_616709, whole genome shotgun sequence.
ACCESSION   DATIQC010000244 DATIQC010000000
VERSION     DATIQC010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_616709"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..1065
                     /gene="lipA"
                     /locus_tag="VLM17_05155"
     CDS             58..1065
                     /gene="lipA"
                     /locus_tag="VLM17_05155"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HSR64977.1"
                     /translation="MTESTPRTIPLAVLGEAAPESLQPGAKQVAGDKIARSPVQFAEA
                     PVLRKPSWIRVRIPAGNAVQALKAKLRENRLVTVCEEASCPNIHECFGHGTATFMVLG
                     EVCTRRCSFCDVAHGRPQPPDPAEPLRLAQTVKDMGLRYVVVTSVDRDDLRDGGAAHF
                     VDCITAIREFSPGTKIEILTPDFRGKGRMERALAILAANPPDVFNHNVETVPDLYRNV
                     RPGADYQWSLTLLRQFKQQHPDIPTKSGIMLGLGETLEQVQGTLRDLRAHDVDMVTIG
                     QYLQPSAHHHPVLRYWTPDEFKALEVYGMELGFSHVASGPLVRSSYHADRQAAEAGVA
                     A"
     gene            1237..>1892
                     /locus_tag="VLM17_05160"
     CDS             1237..>1892
                     /locus_tag="VLM17_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail-specific protease"
                     /protein_id="HSR64978.1"
                     /translation="MKAHHTLLALALAAPLALLARAPAGGSAHDGAAIPSGPTADETT
                     TARYVYGLLSDSRYAYRPRELDDALSADVFKRYLEALDGSKLFFTAQDVAKFAPYRTT
                     LDDAIKDGQLEPAFAIFAMYKQRVEERSAFARALLKQDIFSFTGNDRWYYDREKADWA
                     ADKGALDALWKESVRNDWLRLKLAGKKPDEIRKTLDKRYANLLSSVNELKGEEVFQNF
                     "
BASE COUNT          312 a          709 c          620 g          251 t
ORIGIN      
        1 cctcgcggcc cactcccgtc ccctcccgcc cgcggagggg catcgcctgc ccacgccatg
       61 accgaatcca ccccccgcac catcccgctg gccgtcctcg gcgaggccgc ccccgagtcg
      121 ctgcagcccg gcgccaaaca ggtcgccggc gacaagatcg cgcgctcgcc ggtgcagttc
      181 gccgaggccc cggtgctgcg caagccgtcg tggatccgcg tgcgcatccc ggccggcaac
      241 gcggtgcagg cgctcaaggc caagctgcgc gagaaccgcc tggtcacggt gtgcgaggaa
      301 gccagctgcc cgaacatcca cgaatgcttc ggccacggca cggccacctt catggtcctc
      361 ggcgaggtgt gcacgcgccg ctgctcgttc tgcgacgtgg cgcatggccg tccgcagccg
      421 cccgatccgg ccgaaccgct gcgcctggcg cagacggtca aggacatggg cctgcgctac
      481 gtcgtggtga ccagcgtcga ccgcgacgac ctgcgcgacg gcggcgcggc gcacttcgtc
      541 gactgcatca ccgcgatccg cgaattcagc ccgggcacga agatcgagat cctgacgccg
      601 gacttccggg gcaagggccg catggagcgc gcgctggcga tcctcgcggc gaatccgccg
      661 gacgtgttca accacaacgt cgagaccgtg ccggacctgt accgcaacgt gcgtcccggc
      721 gccgactacc agtggtcgct gaccctgctg cggcagttca agcagcagca cccggacatc
      781 ccgaccaaga gcgggatcat gctcggcctg ggcgagacgc tggagcaggt gcagggcacc
      841 ctgcgcgacc tgcgcgcgca cgacgtcgac atggtcacga tcggccagta cctgcagccg
      901 agcgcgcacc accacccggt gctgcgctac tggacgccgg acgaattcaa ggcgctggag
      961 gtgtacggga tggagcttgg cttcagccac gtcgcctccg gcccgctggt gcgctcctcg
     1021 taccacgcgg accgccaggc cgcggaggcc ggcgtcgccg cctgaacgcg agcggcggcg
     1081 gcatcgggct gacggttcgt tcacacccgg cacggaatgg ccgggtacat tgcagacagg
     1141 ggttccgacg caacttccgg cactgtcggc gagccacggc ggcccccagc ctgaacccac
     1201 ttccccgccg gcccgccccg ggccgtgaga gccccgatga aagcgcacca caccctgctc
     1261 gccctcgccc tcgccgcgcc gctcgcgctg ctcgcccgcg cgcccgcggg cggttcggcg
     1321 cacgacggcg ccgcgatccc gtccgggccg accgccgacg agacgaccac cgcccgctac
     1381 gtgtacggcc tgctttccga cagccgctac gcctatcggc cgcgcgagct ggacgatgcg
     1441 ctgtcggccg acgtcttcaa gcgctacctc gaggcgctgg acggcagcaa gctgttcttc
     1501 accgcgcagg acgtggcgaa gttcgcgccg tacaggacga cgctcgacga cgcgatcaag
     1561 gacggccagc tcgagcccgc gttcgcgatc ttcgcgatgt acaagcagcg ggtggaggaa
     1621 cgctcggcgt tcgcgcgcgc cctgctcaag caggacatct tctccttcac cggcaatgac
     1681 cgctggtact acgaccgcga gaaggccgac tgggccgccg acaagggcgc gctcgacgcg
     1741 ctgtggaagg aatcggtgcg caacgactgg ctgcgcctga agctggccgg caagaagccg
     1801 gacgaaatcc gcaagaccct ggacaagcgt tacgcgaacc tgctctccag cgtcaacgaa
     1861 ctcaagggcg aggaagtctt ccagaacttc at
//
LOCUS       DATIQC010000245         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_475717, whole genome shotgun sequence.
ACCESSION   DATIQC010000245 DATIQC010000000
VERSION     DATIQC010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475717"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..712)
                     /locus_tag="VLM17_05165"
     CDS             complement(<1..712)
                     /locus_tag="VLM17_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase beta chain"
                     /protein_id="HSR64979.1"
                     /translation="MAVSTFDLYKIGIGPSSSHTVGPMRAAARFVSHWLADDGRLART
                     ARVRAEVFGSLALTGRGHGTDKAVLMGLEGHWPNEIDPDLIPAALERIRREKKVRLLG
                     QHEIAFDEKRDLIMNKRQKLPFHTNGMRFTAYDADGNEIATRDYYSVGGGFVVNEDEA
                     AEDRIVADTTPLPHPFHTGAELLAECERTGLSIARLMFENELAWRSADEVRAGLREIW
                     QAMQACVARGIRAEGTLPG"
     gene            complement(718..984)
                     /locus_tag="VLM17_05170"
     CDS             complement(718..984)
                     /locus_tag="VLM17_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64980.1"
                     /translation="MPYLLVRHGVRDYARWRALFDADAAGQRAAGMHVLHVLRDPADP
                     HVVVFLFEVADRARAEAFMQRPGGGKIAEEAGVQPPFDIHWLEK"
     gene            1053..1286
                     /locus_tag="VLM17_05175"
     CDS             1053..1286
                     /locus_tag="VLM17_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HSR64981.1"
                     /translation="MPVLQLFQRDDCHLCDLALEVLARARTPAFESVFIDGDDALEAR
                     YGGRVPVLRDAGGGRELDWPFDADRVRRWLAGG"
     gene            complement(1296..>1747)
                     /locus_tag="VLM17_05180"
     CDS             complement(1296..>1747)
                     /locus_tag="VLM17_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014504047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR64982.1"
                     /translation="GQYQGDVFSGRFPGFGTRLSFDPAQLAGARLDVTIPLATATTGN
                     KDYDDNLRGTDFLDAASFPQARYTATRFRHLGGNQYAADGTLSLHGASKPVTLTFTWT
                     PGAQPVLTGKATVKRLDFGVGGGDWADTDLIPDAIAVSTRVVLQPAR"
BASE COUNT          222 a          616 c          645 g          264 t
ORIGIN      
        1 cgccgggcaa cgtgccttcg gcgcggatgc cgcgcgcgac gcaggcctgc atcgcctgcc
       61 agatctcgcg caggcccgcg cgcacctcgt cggcgctgcg ccaggccagc tcgttctcga
      121 acatgagccg cgcgatcgac aagcccgtgc gttcgcactc ggcgagcagc tccgcgccgg
      181 tatggaacgg atgcggcaac ggcgtggtgt ccgcgacgat ccggtcctcc gccgcttcgt
      241 cctcgttgac cacgaagccg ccgccgaccg agtagtagtc gcgcgtggcg atctcgttgc
      301 cgtcggcgtc gtaggcggtg aagcgcatgc cgttggtgtg gaacggcagc ttctgccgct
      361 tgttcatgat caggtcgcgc ttctcgtcga aggcgatctc gtgctggccg agcagccgca
      421 ccttcttctc gcggcggatg cgttcgagcg cggcggggat caggtccggg tcgatctcgt
      481 tcggccagtg cccttccagt cccatcagca ccgccttgtc ggtcccgtgg ccgcggccgg
      541 tcagcgccag cgagccgaac acctcggcgc gcacgcgcgc ggtgcgggcc aggcggccgt
      601 catcggccag ccagtggctg acgaagcgcg ccgccgcgcg catcgggccc accgtgtgcg
      661 aggagctcgg gccgatgccg atcttgtaga ggtcgaaggt gctgacggcc acggtgccta
      721 cttctccagc caatggatgt cgaacggagg ttgcacgccg gcttcttccg cgatcttccc
      781 gccgcccggg cgctgcatga acgcctcggc gcgcgcgcgg tcggcgacct cgaacaggaa
      841 cacgaccacg tgcggatcgg ccggatcgcg gagcacgtgc agcacgtgca tgccggccgc
      901 gcgctggccg gccgcgtcgg cgtcgaacag cgcgcgccag cgcgcgtagt cgcggacacc
      961 gtggcggacg agcaggtagg gcacgatcgg ggcgggcagc gggaacgccc gtattctatg
     1021 ccgccccgcg tctccccaac ggcccgcccg cgatgcccgt cctgcagctg ttccagcgcg
     1081 acgactgcca cctgtgcgac ctggcgctcg aggtgctggc acgggcgcgg acgccggcct
     1141 tcgagagcgt cttcatcgac ggcgacgacg cgctggaggc gcgctacggc gggcgcgtgc
     1201 cggtgctgcg cgatgccggc ggcgggcgcg aactcgactg gccgttcgat gccgaccgcg
     1261 tgcggcggtg gctcgcgggg ggctagcgcc cggcttcacc gcgccggctg cagcaccacg
     1321 cgggtgctca ccgcgatcgc atccgggatc aggtcggtgt cggcccagtc gccgccgccg
     1381 acgccgaagt ccagccgctt caccgtggcc ttgccggtga gcaccggctg cgcgcccggc
     1441 gtccaggtga aggtcagggt gaccggcttg ctggcgccgt gcagcgacag cgtgccgtcg
     1501 gccgcgtact ggttgccgcc gaggtggcgg aagcgggtgg cggtgtagcg cgcctgcggg
     1561 aagctggccg cgtcgaggaa atccgtgccg cgcaggttgt cgtcgtagtc cttgttgccg
     1621 gtggtcgccg tcgccagcgg gatcgtgacg tcgagcctgg cgccggccag ctgcgcggga
     1681 tcgaagctga gccgcgtgcc gaaccccggg aagcggccac tgaacacgtc gccctggtat
     1741 tgcccgg
//
LOCUS       DATIQC010000246         3708 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_687178, whole genome shotgun sequence.
ACCESSION   DATIQC010000246 DATIQC010000000
VERSION     DATIQC010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687178"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..2200)
                     /gene="flhA"
                     /locus_tag="VLM17_05185"
     CDS             complement(128..2200)
                     /gene="flhA"
                     /locus_tag="VLM17_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HSR64983.1"
                     /translation="MSTPAPSRLQSVVGALRSGAAAPLVVMAMLAMVIVPLAPLVLDA
                     MFTLNIALSLVVLLAVVYVRRPLEFSVFPSVLLMVTLLRLALNVASTRVVLLHGHEGP
                     GAAGHVIESFGQFVIGGSYAVGFVVFAILTVINFVVVTKGSGRISEVSARFILDALPG
                     KQMAIDADLNAGLLTREEAKARREEVREEADFYGAMDGASKFVRGDAIAGLMILAINL
                     VGGLLIGVLQHGLGIADAAKTYSLLAIGDGLVAQLPALLISTAVAMLVTRATREQEMG
                     AAVNKQVFGQRRALTVAAALLGVIGLVPGMPNIPFLALAGVLGYVAWQMKKREAAEAA
                     APEQAATESASSSLAELTWDEVRPVEPLGLEVGYKLIALVDKAQGGELLGRLKGVRRK
                     LTQELGFLIPAVHVRDNLELAPGAYRVLLHGVPIATGELHPERVLALDPGRVFGPLDG
                     LPGKDPAFGLDAVWILPSQRAHAESLGYTVVDAATVVATHLSHLVRERAAELLGHDEV
                     QQLLAAVGKQTPKLVEDLTPKLLPLSVVVRVLQSLLAERVPIRQLRQIVEALLEHGAH
                     TQDPAVLTAAVRTALGRFIVQELNGMAAELPVFTLAPALERVLQDSVSGAGAALEPGL
                     AERLHSNLSECVTRQESRGEPAVLLVPGQIRAAIARLVRHSVPSLAVLAYGEVPEDKR
                     LRLVGAVG"
     gene            complement(2197..3339)
                     /gene="flhB"
                     /locus_tag="VLM17_05190"
     CDS             complement(2197..3339)
                     /gene="flhB"
                     /locus_tag="VLM17_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HSR64984.1"
                     /translation="MSEAGDREDRTELPTAKRLREARDRGDVPRSRELANVAVLGCAS
                     LALLATGPHVGASAQAWLRGALTIDPALLDQQDQLLPHAARLLFGLLAPLLPVFAVAL
                     LACLVSPALTSGLRFSGKALQPNFGRFNLLAGLGRMYGKDSLVELAKALMRVLLVGGI
                     GAWVAHRAFVQVLAFPRMDLATAVSQAIGLLFHCFLATVGGLALLAAIDVPYQRWHWR
                     NRLKMTKQEVRDEFKEQEGSPQVKAKIRQLARQLSQRRMMEAVPTADVVVTNPTHYAV
                     ALRYEAGRMRAPKVVAKGTDEIALKIREVATAHKVSIVEAPPLARALYRHGDLDREIP
                     VNLYAAVAQVLSYVYQLKRWHPARGPMPVLADVAVDPKLSDGEAAR"
     gene            complement(3343..>3708)
                     /locus_tag="VLM17_05195"
     CDS             complement(3343..>3708)
                     /locus_tag="VLM17_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HSR64985.1"
                     /translation="FFAFDGHLALVRLLADSYHALPVGAPLADPHAFLASVPTFFGTA
                     LRAGVLLALPVTVALLAVNLAFGVLAKAAAQLNPMALGLPVALLAGLALLMVLARELQ
                     GPVQALFEQAFAAARAVTG"
BASE COUNT          561 a         1313 c         1346 g          488 t
ORIGIN      
        1 gaccgcatcc ggtccctgtt cctcgcgcac catgcgcagc gcggtgcgca tgtcgggtgc
       61 cacgaaacgc ttgattctcg ctgctgcctc ccggcgcgcc ggcttgccgg cgtcgcccgt
      121 ccgtcactca acccaccgcc cccaccagcc gcaggcgctt gtcctccggc acctcgccgt
      181 aggccagcac cgccaggctc ggcacgctgt gccgcaccag gcgggcgatc gccgcgcgga
      241 tctgcccggg gaccagcagc accgcgggtt cgccgcggct ctcctggcgg gtgacgcact
      301 cgctgaggtt gctgtgcaac cgctcggcga gtcccggctc cagcgcggcg cctgcgccgc
      361 tgaccgagtc ctgcaagacc cgttccagcg ccggggcgag ggtgaagacg ggaagctcgg
      421 cggccatgcc gttgagttcc tggacgatga agcggcccag cgcggtgcgc accgcggcgg
      481 tgagcacggc cggatcctgg gtgtgcgcgc cgtgttccag cagcgcttcg acgatctgcc
      541 gcaactggcg gatcggcacc cgttcggcca gcagcgactg cagcacccgc accaccaccg
      601 acagcggcag cagcttgggc gtcaaatcct cgacgagctt cggcgtctgc ttgccgacgg
      661 cggccagcag ctgctggacc tcgtcgtggc cgagcagctc ggcggcgcgc tcgcgcacca
      721 ggtgcgagag gtgggtggcg acgacggtgg cggcgtcgac cacggtgtag ccgagcgact
      781 cggcgtgcgc gcgctggctc ggcaggatcc acaccgcgtc caggccgaac gccgggtcct
      841 tgcccgggag gccgtcgagc gggccgaaca cgcggcccgg gtcgagcgcc agcacgcgtt
      901 cggggtgcag ttcgccggtg gcgatcggca cgccgtgcag cagcacgcgg taggcgccgg
      961 gcgcgagctc gaggttgtcg cgcacgtgca ccgcggggat caggaagccg agttcctgcg
     1021 tcagcttgcg gcgcacgccc ttcaggcggc cgagcagttc gccgccctgc gccttgtcga
     1081 ccagcgcgat cagcttgtag ccgacctcga ggccgagcgg ttccaccggg cgcacttcgt
     1141 cccaggtgag ttcggcgagc gaggaggacg ccgattcggt cgccgcctgt tccggcgccg
     1201 cggcttcggc ggcttcgcgc ttcttcatct gccaggcgac gtaaccgagc acgccggcca
     1261 gcgcgaggaa ggggatgttc ggcatgcccg gcaccaggcc gatcacgccg agcagagccg
     1321 cggcgacggt cagcgcgcgg cgctggccga acacctgctt gttcaccgcc gcgcccatct
     1381 cctgctcgcg ggtggcgcgc gtgaccagca tcgcgaccgc ggtggagatc agcagcgccg
     1441 gcagctgcgc gacgaggccg tcgccgatgg cgagcagcga ataggtcttc gccgcatcgg
     1501 cgatgccgag gccatgctgc agcacgccga tcagcaggcc gccgacgagg ttgatggcga
     1561 ggatcatcag gccggcgatc gcgtcgccgc gcacgaactt gctggcgccg tccatcgcgc
     1621 cgtagaagtc cgcttcctcg cgcacttcct cgcgccgcgc cttggcttcc tcgcgggtga
     1681 gcaggccggc gttgaggtcg gcgtcgatcg ccatctgctt gccgggcagc gcatcgagga
     1741 tgaagcgcgc cgacacttcg gagatgcggc ccgaaccctt cgtcaccacc acgaagttga
     1801 tgacggtgag gatggcgaac accacgaagc cgacggcata gctgccgccg atcacgaact
     1861 ggccgaacga ctcgatcacg tggccggccg cgcccgggcc ttcgtggccg tgcagcagca
     1921 ccacgcgcgt cgaggcgacg ttcagcgcga ggcgcagcaa cgtgaccata aggaggacgg
     1981 acggaaacac cgagaactcg agcggccgcc gcacgtagac gacggccagc agcacgacca
     2041 gcgagagcgc gatgttgagg gtgaacatcg catccagcac cagcggcgcc agcggcacga
     2101 tgaccatggc gagcatcgcc atcaccacca gcggcgcggc ggcgccggag cgcagcgcgc
     2161 cgacgacgga ctgcaggcgg gacggggcgg gcgtgctcat cgtgcggcct caccgtcgga
     2221 gagtttcggg tcgaccgcga cgtccgccag caccggcatc ggcccgcgcg cggggtgcca
     2281 gcgcttgagc tggtagacgt aggacagcac ctgggcgacg gcggcgtaga ggttcacggg
     2341 gatctcgcgg tcgaggtcgc cgtgccgata caaggcgcgt gccagcggcg gcgcctcgac
     2401 gatgctgacc ttgtgggcag tcgctacttc gcggatcttc agcgcgatct cgtcggtgcc
     2461 cttggccacg accttcggcg cacgcatcct gccggcctcg tacctgagcg cgacggcgta
     2521 gtgggtgggg ttggtcacca ccacgtcggc ggtcggcacc gcctccatca tccggcgctg
     2581 cgacagctgg cgcgccagct ggcggatctt ggccttgacc tgcgggctgc cttcctgctc
     2641 cttgaactcg tcgcgcactt cctgcttggt catcttcagg cggttgcgcc agtgccagcg
     2701 ctggtagggc acgtcgatcg ccgccagcag cgccaggccg ccaacggtgg cgaggaagca
     2761 gtggaacagc aggccgatcg cctgcgacac cgcggtcgcg aggtccatcc gcggaaaggc
     2821 gagcacctgc acgaatgcgc ggtgcgccac ccaggcgccg atcccgccga ccagcagcac
     2881 gcgcatcagc gccttcgcca gttcgaccag gctgtccttg ccgtacatgc ggccgagccc
     2941 ggccagcagg ttgaacctgc cgaagttcgg ctgcagcgcc ttgccggaaa agcgcaggcc
     3001 cgaggtcagc gccggcgaga ccaggcaggc gagcagggcg accgcgaaca ccggcagcag
     3061 cggcgcgagc aggccgaaca gcagccgcgc ggcgtgcggc agcagctggt cctgctggtc
     3121 gaggagggcg ggatcgatgg tgagcgcgcc gcgcagccag gcctgcgccg acgcgccgac
     3181 atgcggtccg gtggcgagca gggcgaggct ggcgcagccg agcacggcga cgttggccag
     3241 ttcgcgcgag cgcggcacgt cgccgcggtc gcgcgcctcg cgcaggcgct tggctgtcgg
     3301 aagttcggtg cggtcctcgc ggtcgccagc ttcgctcatc tctcacccgg tgacggcgcg
     3361 ggcggccgcg aaggcctgct cgaacaacgc ctgcaccggg ccctgcaact cgcgtgccag
     3421 caccatcagc agggcgaggc ccgccagcag cgcgaccggc aggccgagcg ccatcgggtt
     3481 gagctgcgcc gccgccttcg ccagcacgcc gaaggcgagg ttcaccgcca gcagcgcgac
     3541 cgtcaccggc agcgccagca gcacgccggc gcgcagggcg gtgccgaaga aggtcggcac
     3601 gctggcgagg aaggcgtgcg ggtcggccag cggcgcgccg accggcagtg cgtggtagct
     3661 gtcggcgagc aggcgtacca gcgcgaggtg gccgtcgaac gcgaagaa
//
LOCUS       DATIQC010000247         8070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_16428, whole genome shotgun sequence.
ACCESSION   DATIQC010000247 DATIQC010000000
VERSION     DATIQC010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8070
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16428"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VLM17_05200"
     CDS             <1..141
                     /locus_tag="VLM17_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt efflux protein"
                     /protein_id="HSR64986.1"
                     /translation="GGLVAAAIGHLPEAGEELTLGRFGFRVASADARRLHALHVSVHA
                     DH"
     gene            128..1372
                     /locus_tag="VLM17_05205"
     CDS             128..1372
                     /locus_tag="VLM17_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4105 domain-containing protein"
                     /protein_id="HSR64987.1"
                     /translation="MRTTDAGDIQRRPSPSPARGGRPGWARARFIALIALCVLLLAGA
                     AQATPRIGVMTMLPGEIFWERFGHDAIVVDDPAAGAPVSYNFGFFDPSEPDFVSRFVH
                     GHMRYRLVALPLADDLAYYREVGRGVSIQWLDMAPAQAQSLADALAENALPRNARYDY
                     DYFTDNCSTRVRDALDHALGGQLHEQLAGRSRGNTYRGEAVRLASPAPWMSLGFDVGL
                     GPFADTPLSRWEEAFVPMHLADSLREVRLADGRPLVRAEARLLPHRVAPEPAERARPW
                     WPWLLAGLAAGIALLAAGARAPRAVAAFALACWTLAGLLGALLLFLWIDTAHRAAWAN
                     QNLLLFDPLCLLLLPGGWRLVRGRAAGPWFGRLLVAVLAAAGFAWFMRWLPAFPYQDN
                     ARWIALLLPVHAALCLRLRPRA"
     gene            1411..2406
                     /gene="corA"
                     /locus_tag="VLM17_05210"
     CDS             1411..2406
                     /gene="corA"
                     /locus_tag="VLM17_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HSR64988.1"
                     /translation="METEAPLPACVVNSAVYDRQGHRRDITLDAISDVLAVDDGSFVW
                     VGLYDPEDALLDKLQEEFGLHDLAIEDAQHAHQRPKIEAYGNSLFIVAHTAQVVDGHI
                     RFGETHIFLGPRYLVTVRHGASLSYAAVRARVEREPELLALGPTYGLYGILDFIVDNY
                     QPIVDEFQQALDSLEQDVFAETYKRDTIQRLYELKKELTQLRLSIAPLQDILAQLART
                     QDNLIPREVRPYFRDVLDHVQRVNDATDTMREMLSAAMGVNLSLVTINQGEIVKKLAG
                     WAALLAAPTLITSWYGMNFRYMPELGGRYSYYVLMLVVLVVCVALYRYLKKVQWL"
     gene            2585..4642
                     /locus_tag="VLM17_05215"
     CDS             2585..4642
                     /locus_tag="VLM17_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HSR64989.1"
                     /translation="MKLLHWIGWSLLSLLAAVSLGVLALARGETISAAWVVTAALSVF
                     AIGYRFYARYIAANVLALDPARATPAVRRNDGLDYVPTEKPVLFGHHFAAIAGAGPLV
                     GPVLAAQMGYLPGLLWILFGVLLAGAVQDFLVLVFSVRRDGRSLGEMIRVEVGPAAGL
                     VAMAGILAIMVILLAVLALVVVKALAISPWGTFTVAMTIPIALLMGLYLRVLRPGRVL
                     EASLLGLALLLLSIWLGGHVAASPAWAPRFTFDGLTLAWMLIGYGFVAAVLPVWLLLA
                     PRDYLSTFLKLGTVALLAVAILVALPELRMPAVTRFIDGSGPVFAGSLFPFLFITIAC
                     GAVSGFHALISSGTTPKMLANEADARAIGYGGMLMEALVAVMALVAASVLEPGVYFAM
                     NAPVAAIGATTASAAHAIAGWGFAVTPDMLDATARQIGEATILSRTGGAPTLAVGMAR
                     ILHGIFGGSGMLAFWYHYAILFEALFILTTIDAGTRVARFMIQEFVGLAIPTFQRTES
                     WAGNVVCTALAVAGWGWFLVQGVTDPLGGINTLWPLFGIANQMLAAIALVFCCVVLVK
                     SRHARHAWIALLPTAWLLACTLTAGWQKLFDADPKIGFLANARRYGEALARGELLAPA
                     TSLAQMRQVLLNNRVDAALCALLLVVVVATVAFGLRAALAARSKDIKARETGDVALDA
                     GVR"
     gene            4614..4829
                     /locus_tag="VLM17_05220"
     CDS             4614..4829
                     /locus_tag="VLM17_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HSR64990.1"
                     /translation="MWHWMRVSARVARRGWRLASRTARLAIGLPDYEAYLAHMRECHP
                     EQAPMDRTAFFADRLDARYGKGRSRCC"
     gene            complement(4833..5003)
                     /locus_tag="VLM17_05225"
     CDS             complement(4833..5003)
                     /locus_tag="VLM17_05225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64991.1"
                     /translation="MADEQQPDRYRGPERRAGKDRRQGHDRREEIRFELDKDDRRSGR
                     DRRKQTGWDRVR"
     gene            5226..6098
                     /locus_tag="VLM17_05230"
     CDS             5226..6098
                     /locus_tag="VLM17_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR64992.1"
                     /translation="MNTRLSRSLKVALLSASLVAGTAYASCYCHGTLVAKKFYDANAN
                     GHRDTGEPWLQGWKMTASSVSKSFLSTKFTNINGAASWSVVPSNDYALTEGTPLEGNW
                     VQSAPVDGSGNPINPVTGLHVVGGYTKVVKFGNYCTTGSGGLTPGFWSNRNGFNTMND
                     GGEVASELALLSSLHLRDANGQDFDPTNYADFRAWLLGGTATNMAYMLSVHLAAMQLN
                     VESGKVDDSRVYVPAGMTIGEIMALADQSLALHGFTPSGDAERPIQEQYKNWLDALNN
                     NAQAVSLTPCAYTF"
     gene            complement(6158..>8070)
                     /locus_tag="VLM17_05235"
     CDS             complement(6158..>8070)
                     /locus_tag="VLM17_05235"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017169463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSR64993.1"
                     /translation="VFAKRVVDLAANKASTALWLEDLAARDGAPPVRLTPEGWNVNSP
                     AFSPDGKTVYFLSGKSGSSQLYALPAAGGTPRQVTDLPVDVDAFLLSPDGQRIAFSAG
                     VFPDCGGDLACTKKKLDTKAPASGVVFDHLFIRHWDTWADGRLNRLFVASLAGDGVAK
                     TATLLGRDLVADVPSKPFGDMSDVAWAPDGRSLVASARLSNGVEPTSTNFDLYRLAAD
                     GSGAAQNLTAANQAWDAGPVFSADGKTLYYRAMKRPGFEADRFGLMAMDLASGATREL
                     DPQWDRSANGITLSADGRTIYTTAEDVGEQPLFAVDVASGKATRLVGDGTVSSFVLAG
                     DTLAFTRNGMKTGDQLFAADPQGRHPRAITRSAAEMLPDVRFGDFEQFTFKGWNNDTV
                     HGYVVKPWNWRKGKRYPVAFLIHGGPQGSFGNGWSYRWNPQTYAGQGYAVVMVDFHGS
                     TGYGQAFTDAISQHWGDRPLEDLQKGWAAAQQQYGWLDGDKACALGASYGGFMVYWIA
                     GNWPQPWKCLVDHDGVFDNRMMGYSTEELWFSRWENGGMPWEHPELYEKFNPINYVQN
                     WRVPMLVVHSQQDFRIPVEQGIAAFSALQQKGIESKYLYFPDENHWVLKPQNSILWHD
                     TVNAWLRTHIGQ"
BASE COUNT         1057 a         2907 c         2784 g         1322 t
ORIGIN      
        1 ggcggcctgg tggcggcggc gatcggccac ctgccggaag ccggcgagga actgacgctc
       61 ggccgcttcg gcttccgcgt ggccagcgcc gatgcgcgcc gcctgcatgc gctgcacgtg
      121 agcgtgcatg cggaccactg acgcgggcga catccagcgc cgcccttctc cctcccccgc
      181 ccgcggggga aggccggggt gggcgcgcgc gcgcttcatc gcgctgatcg cgctgtgcgt
      241 gctgctgctg gcgggcgccg cgcaggccac gccccgcatc ggcgtgatga ccatgctgcc
      301 gggggaaatc ttctgggagc gcttcggcca cgacgcgatc gtggtcgacg atcctgccgc
      361 cggcgcgccg gtgtcctaca acttcggctt cttcgatccg agcgagccgg atttcgtctc
      421 gcgcttcgtg cacggccaca tgcgctaccg cctggtcgcg ctgccgctgg ccgacgacct
      481 cgcctactac cgcgaggtcg ggcgcggcgt gtcgatccag tggctcgaca tggcgcccgc
      541 gcaggcgcag tcgctcgccg atgcgctggc ggaaaacgcg ctgccgcgga acgctcgcta
      601 cgactacgac tacttcaccg acaactgctc gacgcgcgtg cgcgacgcgc tcgaccacgc
      661 gctcggcggg cagctgcacg agcagctggc gggccgctcg cgcggcaaca cctaccgcgg
      721 cgaggcggtc cggctggcct cgccggcgcc gtggatgtcg ctgggcttcg acgtcggcct
      781 cggcccgttc gccgacaccc cgctgtcgcg ctgggaggag gctttcgtgc cgatgcacct
      841 cgccgacagc ctgcgcgagg tgcgcctggc cgacggacgc cccctggtgc gggcggaagc
      901 gcggctgctg ccgcaccggg tcgcgccgga accggccgag cgcgcgcggc cgtggtggcc
      961 gtggctgctc gccggcctgg ccgcgggcat cgcgctcctg gccgccggcg cgcgcgcgcc
     1021 gcgcgcggtc gccgcgttcg ccctcgcctg ctggacgctc gccggcctgc tcggtgcgct
     1081 gctgctgttc ctctggatcg ataccgcgca ccgcgcggcc tgggccaacc agaacctgct
     1141 gctgttcgat cccctctgcc tgctgttgct gcccggcggc tggcggctcg tgcgcgggcg
     1201 cgcagcgggg ccgtggttcg gccgcctgct cgtcgcggtg ctcgcggccg cgggtttcgc
     1261 ctggttcatg cgctggctgc cggcctttcc ctaccaggac aacgcccgct ggatcgcgct
     1321 gttgctgccg gtacacgccg cgctgtgcct gcggctgcgc cctcgcgcct gaacttgccg
     1381 ccgcccgccg cccgaaggca ggatgcgggc atggagaccg aagcgcccct gcccgcctgc
     1441 gtcgtcaaca gcgcggtcta cgaccgccag ggccaccgcc gcgacatcac cctcgacgcg
     1501 atcagcgacg tgctcgcggt cgacgacggc agcttcgtct gggtcgggct gtacgacccc
     1561 gaggacgcgc tcctcgacaa gctgcaggag gaattcggcc tgcacgacct cgccatcgag
     1621 gacgcgcagc acgcccacca gcggccgaag atcgaggcct acggcaactc gctgttcatc
     1681 gtcgcgcaca cggcgcaggt ggtcgacggc cacatccgct tcggcgagac ccacatcttc
     1741 ctcggcccgc gctacctggt gaccgtgcgc cacggcgcct cgctgtcgta cgcggcggtg
     1801 cgcgcgcggg tggaacgcga gcccgaactg ctcgcgctcg gccccaccta cggcctgtac
     1861 ggcatcctcg acttcatcgt cgacaactac cagccgatcg tcgacgagtt ccagcaggcg
     1921 ctcgattccc tcgagcagga cgtgttcgcc gaaacctaca agcgcgacac catccagcgc
     1981 ctgtacgagc tcaagaagga actcacccag ctgcggctgt ccatcgcgcc gctgcaggac
     2041 atcctcgcgc agctggcgcg cacccaggac aacctcatcc cgcgcgaggt gcggccgtac
     2101 ttccgcgacg tgctcgacca cgtccagcgc gtcaacgacg ccaccgacac catgcgcgag
     2161 atgctgtccg cggcgatggg cgtcaacctg tccctggtga cgatcaacca gggcgagatc
     2221 gtcaagaaac tcgccggctg ggccgcgctg ctcgcggcgc ccaccctgat caccagctgg
     2281 tacggcatga acttccgcta catgcccgag ctgggcgggc ggtacagcta ctacgtgctg
     2341 atgctggtgg tgctggtggt gtgcgtggcc ctgtatcggt acctgaagaa ggtgcagtgg
     2401 ctgtagccgc cggcccgcgg cgcccgccct cgatgcgacg gcatggccga gccggcgcgc
     2461 gcgcccttcc ggcgaccgcg ccgcggcgcg ctccgcccac ccgcaaccgt ccctgccatg
     2521 ctgcgccgcg gtttgctttc gccgccgcca gcggcgaccc ttcgcgacct gacgcggagg
     2581 ccgcatgaag ctgctgcact ggatcggctg gagcctgctg tcgctgctgg cggcggtttc
     2641 cctcggcgtg ctcgcgctcg cgcgcggcga gacgatcagc gcggcctggg tggtcacggc
     2701 cgcgctgtcg gtattcgcga tcggctaccg gttctacgcg cgctacatcg ccgcgaacgt
     2761 gctcgcgctc gatcccgcgc gggccacgcc ggcggtgcgc cgcaacgacg ggctggacta
     2821 cgtgccgacc gagaagccgg tgctgttcgg ccaccacttc gccgcgatcg ccggcgccgg
     2881 cccgctggtc ggccccgtgc tcgccgcgca gatgggctac ctgccggggc tgctctggat
     2941 cctgttcggc gtgctgctcg cgggcgcggt gcaggatttc ctcgtcctgg tgttctcggt
     3001 ccggcgcgac gggcgttcgc tcggcgagat gatccgcgtg gaggtcggcc ccgccgccgg
     3061 cctcgtggcg atggccggca tcctcgcgat catggtgatc ctgctggcgg tgctggccct
     3121 ggtggtggtg aaggcgctgg cgatcagccc gtggggcacg ttcaccgtgg ccatgaccat
     3181 cccgatcgcg ctgctgatgg gcctctacct gcgcgtgctg cggcccggtc gcgtcctcga
     3241 ggcctcgctg ctcggcctcg ccctgttgct gctgtccatc tggctgggcg gccacgtcgc
     3301 cgcctcgccc gcgtgggcgc cgcgcttcac cttcgacggc ctgaccctgg cctggatgct
     3361 gatcggctac ggcttcgtcg ccgcggtgct gccggtatgg ctgctgctgg cgccgcgcga
     3421 ctacctgtcc accttcctca agctcggcac cgtcgcgttg ctggcggtcg ccatcctcgt
     3481 cgccctgccc gaactgcgca tgccggcggt gacgcgcttc atcgacggca gcgggccggt
     3541 gttcgccggc agcctcttcc cgttcctgtt catcacgatc gcgtgcgggg cggtgtccgg
     3601 cttccatgcg ctgatcagct cggggaccac gcccaagatg ctggcgaacg aagccgacgc
     3661 gcgcgcgatc ggctacggcg gcatgctgat ggaggcgctg gtcgcggtga tggcgctggt
     3721 cgcggccagc gtgctcgagc ccggggtgta tttcgcgatg aacgcgccgg tggcggcgat
     3781 cggcgccacc accgcgtccg ccgcgcacgc catcgccggc tggggcttcg ccgtgacgcc
     3841 ggacatgctc gacgcgaccg cgcggcagat cggcgaggcg acgatcctgt cgcgcaccgg
     3901 cggcgcgccg acgctcgcgg tcggcatggc gcggatcctg cacggcatct tcggcggcag
     3961 cggcatgctc gcgttctggt accactacgc gatcctgttc gaggcgctgt tcatcctcac
     4021 cacgatcgat gccggcaccc gcgtggcccg tttcatgatc caggaattcg tcggcctggc
     4081 gatccccacg ttccagcgca ccgaaagctg ggccggcaat gtcgtctgca ccgccctcgc
     4141 ggtcgccggc tggggctggt tcctggtgca gggcgtgacc gatccgctgg gcggcatcaa
     4201 tacgctgtgg ccgctgttcg gcatcgccaa ccagatgctg gcggcgatcg cgctggtgtt
     4261 ctgctgcgtg gtgctggtga agtccaggca tgcgcggcat gcgtggatcg cgctgctgcc
     4321 gaccgcgtgg ctgctggcgt gcacgctcac cgccggctgg cagaagctgt tcgatgccga
     4381 tccgaagatc ggcttcctcg ccaatgcgcg ccgctatggc gaggcgctcg cgcgcggcga
     4441 actgctggcg cccgcgacct cgctggcgca gatgcggcag gtgctgctca acaatcgcgt
     4501 cgacgcggcg ttgtgcgcct tgctgctggt ggtggtggtg gcgaccgtag cgttcggcct
     4561 gcgcgcggcg ctcgcggcgc gcagcaagga catcaaggcc agggagacgg gcgatgtggc
     4621 actggatgcg ggtgtccgct agggtcgcgc ggcgcggctg gcggctggcg tcgcgcaccg
     4681 cgcggctggc gatcggattg cccgactacg aggcttacct cgcgcacatg cgcgagtgcc
     4741 atcccgagca ggcgccgatg gaccgcacgg ccttctttgc cgaccggctg gacgcgcgct
     4801 atggcaaggg ccgctcgcgc tgctgctgag gcctagcgga cccggtccca gcccgtctgc
     4861 ttgcgccggt cacgcccgct gcggcggtcg tccttgtcca gttcgaaacg gatttcctcg
     4921 cggcggtcat gcccctgccg ccggtccttg ccggcccgcc gttccgggcc ccggtaccgg
     4981 tccggttgct gttcgtccgc catggccgcc cccctctcgc caatgcgcgc cggtagcttc
     5041 cgccgcgttt cccgccgcgt caacccggcg tgaaccacga ccctcgcgct taccgtcgcg
     5101 catgcaggtt cgtcaccagc gcgtgtacgg aacgtcaaga accggccggt cgacgaccaa
     5161 tcggccgttg cggtgcgcgc acggcgttgt ccgctgtgct ccaccccact ttgacaagga
     5221 ttgccatgaa cacccgcctc tcccgatcgc tgaaggtcgc gctgctgtcc gccagcctgg
     5281 tcgccggcac cgcgtatgcc agttgctatt gccacggcac gctcgtggcc aagaagttct
     5341 atgacgccaa cgccaacggc caccgggaca cgggcgagcc ttggctccag ggctggaaga
     5401 tgacggccag ctccgtcagc aaatccttcc tgtcgaccaa gttcaccaac atcaacggcg
     5461 ccgcgtcctg gtcggtcgtg ccgagcaacg actacgcgct gaccgagggc acgccgctcg
     5521 aaggcaactg ggtgcagtcg gccccggtgg acggcagcgg caacccgatc aaccccgtga
     5581 ccggcctgca cgtcgtcggc ggctacacca aggtcgtcaa gttcggcaac tactgcacca
     5641 cgggcagcgg cggcctcacg cccggcttct ggagcaaccg gaacggcttc aacaccatga
     5701 acgacggcgg cgaggtcgcg agcgaactgg cgctgctgtc cagcctgcac ctgcgcgacg
     5761 ccaacggcca ggacttcgat ccgaccaact acgccgattt ccgcgcctgg ctgcttggcg
     5821 gcaccgccac caacatggcc tacatgctgt cggtgcacct ggcggcgatg cagttgaacg
     5881 tcgaatccgg caaggtcgac gacagccgcg tctacgtgcc cgccggcatg accatcgggg
     5941 agatcatggc gctcgccgac cagtcgctgg cgctgcacgg gttcaccccg tccggcgacg
     6001 cggagcgccc gatccaggag cagtacaaga actggctgga cgccctcaac aacaatgcgc
     6061 aggcggtgtc gctcacgccg tgcgcctaca cgttctgaac ccccgcgccg ggaaaagaaa
     6121 aagccccgca tccgcggggc tttttcgttg cggcgcctta ctggccgatg tgcgtgcgca
     6181 gccaggcgtt gacggtgtcg tgccagagga tgctgttctg cggcttgagc acccagtggt
     6241 tctcgtcggg gaagtacagg tacttagact cgatgccctt ctgctgcagc gcgctgaacg
     6301 cggcgatgcc ctgttccacc gggatgcgga agtcctgctg gctgtgcacc accagcatcg
     6361 gcacccgcca gttctgcacg tagttgatcg ggttgaactt ctcgtacagc tccgggtgct
     6421 cccacggcat gccgccgttc tcccagcggc tgaaccacag ctcctcggtg ctgtagccca
     6481 tcatgcggtt gtcgaacacc ccgtcgtggt cgaccaggca cttccacggc tgcggccagt
     6541 tgcctgcgat ccagtacacc atgaagccgc cgtagctcgc gccgagcgcg caggccttgt
     6601 cgccgtcgag ccagccgtac tgctgctgcg ccgcggccca gcctttctgc aggtcctcga
     6661 gcggacggtc gccccagtgc tggctgatcg cgtcggtgaa cgcctggcca taaccggtcg
     6721 acccatggaa gtcgaccatc accaccgcat agccctggcc cgcgtaggtc tgcgggttcc
     6781 agcggtagct ccagccgttg ccgaagctgc cctgcgggcc gccgtggatg aggaacgcga
     6841 ccggatagcg cttgcccttc cgccagttcc acggcttgac cacgtagccg tgcacggtgt
     6901 cgttgttcca gcccttgaag gtgaactgct cgaaatcgcc gaagcgcacg tcgggcagca
     6961 tctcggcggc gctgcgggtg atcgcgcgcg gatggcgtcc ctgcgggtcg gcggcgaaca
     7021 gctggtcgcc ggtcttcatg ccgttgcggg tgaaggcgag cgtgtcgccg gcaagcacga
     7081 acgaggagac ggtgccgtcg ccgaccagcc tggtcgcctt gccgctggcg acgtcgaccg
     7141 caaacagcgg ctgctcgccg acgtcctccg cggtcgtgta gatggtcctg ccgtcggcgg
     7201 agagggtgat gccgttggcc gagcggtccc actgcgggtc gagttcgcgg gtcgcgccgc
     7261 tcgcgaggtc catcgccatc aggccgaagc ggtcggcctc gaagcccggg cgcttcatcg
     7321 cgcggtagta cagggtcttg ccgtcggcgc tgaacaccgg gccggcgtcc caggcctggt
     7381 tggcggcggt gaggttctgc gcggcgccgc tgccgtcggc cgccaggcga tacaggtcga
     7441 agttggtgga ggtcggctcg acgccgttgg acaggcgcgc gctcgcgacc aggctccggc
     7501 cgtccggcgc ccaggcgacg tcggacatgt cgccgaacgg cttggacggc acgtcggcga
     7561 ccaggtcgcg gccgagcagc gtggcggtct tcgccacgcc gtcgccggcc agcgacgcga
     7621 cgaacaggcg gttgaggcgg ccgtcggccc aggtatccca gtggcggatg aagaggtggt
     7681 cgaacacgac gccgctcgcc ggcgccttcg tgtcgagctt tttcttcgtg caggcgaggt
     7741 cgccgccgca gtccgggaac acgcccgcgc tgaaggcgat gcgctggccg tcgggcgaga
     7801 gcaggaacgc gtcgacgtcg accggcaggt cggtgacctg gcgcggcgtg ccgcccgctg
     7861 ccggcagcgc gtagagctgc gagctgcccg acttgccgct gaggaagtac acggtcttcc
     7921 cgtcgggcga gaacgcgggc gagttgacgt tccagccttc cggcgtgagc cgcaccggcg
     7981 gcgcgccgtc gcgcgcggcg aggtcctcga gccacagcgc ggtcgaggcc ttgttggcgg
     8041 ccaggtcgac cacgcgcttc gcgaacacca
//
LOCUS       DATIQC010000248         5887 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_193305, whole genome shotgun sequence.
ACCESSION   DATIQC010000248 DATIQC010000000
VERSION     DATIQC010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5887
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193305"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /locus_tag="VLM17_05240"
     CDS             complement(<1..616)
                     /locus_tag="VLM17_05240"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012479083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HSR64994.1"
                     /translation="MTAPTWLVTGGAGFIGGNFVLEAIARGVRVVNLDALTYAGNLDT
                     LAAVDGDPAHLFVQGDIGDRALVARLLAEHRPQAVVNFAAESHVDRSIDGPAAFVQTN
                     VVGTLALLEAARDYWKSLEGAAKESFRFLHVSTDEVYGSLGDTGKFTETTPYAPNSPY
                     SASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYQFPEKLIPLII"
     gene            complement(657..1133)
                     /gene="ssb"
                     /locus_tag="VLM17_05245"
     CDS             complement(657..1133)
                     /gene="ssb"
                     /locus_tag="VLM17_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HSR64995.1"
                     /translation="MARGINKVILVGNLGDDPETKYTQGGMAVTTIRLATTSVRKDKD
                     GQTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYVEGSIRYDKFTGQDGQERYYTDIVA
                     DEMQMLGGRGEGRGEPRAERSERPQRSGPPRRDAEPARPAPKADFADDFSDDDIPF"
     gene            1290..2288
                     /locus_tag="VLM17_05250"
     CDS             1290..2288
                     /locus_tag="VLM17_05250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007966188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HSR64996.1"
                     /translation="MDSPAAQHPLPDLPAIQRLAADDMAAVDALIRRRLSSDVVLINQ
                     VAEYIIGAGGKRLRPMLLLLAAGALGHRGPDAHQLAAVVEFIHTATLLHDDVVDESDL
                     RRGRRTANAVWGNAASVLVGDFLYSRGFQLMVELDRMEVMRILADTTNRIAEGEVLQL
                     LHVRNPDTDEAAYLRVIERKTAVLFAAATRLGALLAGADAATQDRLNDYGLNLGYAFQ
                     IADDVLDYAADADALGKNLGDDLAEGKATLPLIHAIAHSEGATRDRLRDALAHGDVDA
                     MPDVLAAIHATGGLDHSRQRARAYARAAEAALDGLPGNPCVSALRGLARYAVDRDR"
     gene            complement(2290..3081)
                     /locus_tag="VLM17_05255"
     CDS             complement(2290..3081)
                     /locus_tag="VLM17_05255"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HSR64997.1"
                     /translation="MRRTLAGFALLLAAAPAFAAMQAKPVEWTLDGTTFRGVLVYDAA
                     GSKRPGLVMVPDWKGVTDAAIDKAKHVAGRDYVILVADVYGKDVRPQDDAAALAQARR
                     MYADRNVLRARAAKALEVLKAQAGRAPLDPAKVGALGYCFGGATVLELARSGADLAGV
                     VTFHGGLGTTLPARPGAVKASLLVLNGADDKGTAGDIPAFEKEMKDAGADWQFVNFSG
                     AVHCFALPTANNPPGCMYDERATRRGERMMRDFFAERFATQAGSR"
     gene            complement(3179..4585)
                     /gene="murD"
                     /locus_tag="VLM17_05260"
     CDS             complement(3179..4585)
                     /gene="murD"
                     /locus_tag="VLM17_05260"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008572406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HSR64998.1"
                     /translation="MSGSPTDIGRLAGRRVALWGWGREGRAAWRAIRGRLPALPLTLF
                     CNAAEAIDAAALGDAHLQTDIDPPTADALAAFDVVVKSPGISPYRGEAVGAASRGTRF
                     VGGTALWFAGHPDARTVCVTGTKGKSTTTSLLAHLLRAGGHVTALAGNIGLPLLELVD
                     PQPAPELWAIELSSYQTGDVAASGVRPQVAVVLNVFPEHLDWHGSEARYVEDKLKLLT
                     EARPRIAVLNAADPRLAAMVLPDSDVRWFNRPDGWHLREDLLYRGDARIMDTSTLPLP
                     GRHNRGNLCAVLAAIEALGFDAASLAPHAATFRPLPNRLQTLGTRDGITFVNDSISTT
                     PHATLAALDCFRDRRVAVLVGGHDRGIAWDEFALAMGADAPAAIVTMGQNGPKIHALL
                     APAARERGFALSAARDLGEAIDQARSALAGEGVVLLSPGAPSFGAYKDYVARGRHFAQ
                     LGGFDPDSISVIPGLGIA"
     gene            complement(4566..>5887)
                     /gene="murL"
                     /locus_tag="VLM17_05265"
     CDS             complement(4566..>5887)
                     /gene="murL"
                     /locus_tag="VLM17_05265"
                     /EC_number="5.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011258235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016855 - racemase and epimerase activity,
                     acting on amino acids and derivatives [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L-
                     glutamate epimerase"
                     /protein_id="HSR64999.1"
                     /translation="RFVRCGFDPASGVARLVYAFDDGPELVETITVPGAPFALEGARA
                     AAAVQALRLLHLIAGVSYYKAAVPGDIRIDSYDIDADTAALLELVYVNGLGEFAYRNG
                     LDLHGRIRFPHRDGSDAPAPALGLREHALVAIGGGKDSLVSIEALRGAGIAQTVTWIG
                     GSQLIRACAERTGLPTLNIGRALAPALFEYNRQGAWNGHIPVTVLNSAILVFAAILLG
                     VDQVVFSNERSASYGSLIEGTGEVNHQWSKGWACEQAFGDYVQRHVAADLRYYSLLRP
                     LSELAVARQFAKTDHYDAWFSSCNRNFHILGERPVNRWCGVCPKCHFVFLALAPFMPK
                     PRLTAIFGRNLLDDLSQVPGYDALLEYRDHKPFECVGEGRESRAAMATLATRPEWRED
                     AIVERFAREIRPQLGDEAPDVAPLLAIEGDHRIPAAVWEAVRVRFAD"
BASE COUNT          831 a         2094 c         2114 g          848 t
ORIGIN      
        1 cgatgatcag cgggatgagc ttttccggga actggtaggg accgtagttg ttcgagcagt
       61 tcgttgtcag gaccggcagg ccgtaggtgt ggtggaaggc gcgcaccagg tggtcggagg
      121 cggccttcga cgcggaatag ggggaattcg gcgcgtacgg cgtggtctcg gtgaacttgc
      181 cggtgtcgcc cagcgagccg tacacctcgt cggtggagac atgcaggaaa cggaacgatt
      241 ccttggccgc gccttccagc gatttccagt agtcgcgcgc cgcttccagc aacgccagcg
      301 tgccgaccac gttggtctgc acgaaggcgg cggggccgtc gatcgaccgg tcgacgtggc
      361 tctcggcggc gaagttgacc accgcctgcg ggcggtgctc ggccagcagg cgcgcgacca
      421 gcgcgcggtc gccgatgtcg ccctgcacga acaggtgcgc cgggtcgccg tcgaccgccg
      481 cgagggtgtc gaggttgccc gcgtaggtca gcgcatcgag gttgaccacg cgcacgccgc
      541 gcgcgatcgc ctcgaggacg aagttgccgc cgatgaagcc ggcgccgccg gtgaccagcc
      601 aggtgggcgc cgtcatcggc gacggaccct tgctttgcga cagggccatg gcgtcctcag
      661 aacgggatgt cgtcgtcgct gaagtcgtcg gcgaagtcgg ctttcggcgc cgggcgcgcg
      721 ggctccgcgt cgcggcgcgg cgggccgctg cgctgcggac gctcgctgcg ttccgcgcgc
      781 ggctcgcccc ggccctcgcc gcgaccgccg agcatctgca tctcgtcggc gacgatgtcc
      841 gtgtagtagc gctcctgccc gtcctggccg gtgaacttgt cgtagcggat ggagccctcg
      901 acgtagcact gcgagccctt gcgcaggtac tcgccggcga tctcgccgag cttgccgaag
      961 aacttcaccc ggtgccactc ggtgcgctcc tgggtctgcc cgtccttgtc cttgcgcacg
     1021 ctggtggtgg cgaggcggat cgtggtcacc gccatgccgc cctgggtgta cttggtttcg
     1081 gggtcgtcac cgaggttgcc gaccaggatg accttgttga tgccgcgtgc catggaagtc
     1141 cttgccttgc gtccacccgg atcgggcgtg tccattggag tataccggca ggcacggacc
     1201 cgatcggccg acgccgcggc gcgctgtcgg ggttttccgg ccgccgcgcg gcgctccgta
     1261 taatcgcggt cccacgtcgc ggacccgcca tggattcccc cgccgcacag cacccgctgc
     1321 cggacctgcc ggccatccag cgcctggccg ccgacgacat ggcggccgtg gatgcgctga
     1381 tccgccgccg cctgtcctcc gacgtggtgc tgatcaacca ggtcgccgaa tacatcatcg
     1441 gcgccggcgg caagcggctc cggccgatgc tgctgctgct cgcggccggc gcgctgggcc
     1501 accgcgggcc cgacgcccac cagctggcgg cggtggtgga gttcatccat accgccaccc
     1561 tgctgcacga cgacgtggtc gacgaatccg acctgcgccg aggccgccgc accgccaatg
     1621 cggtgtgggg caacgccgcc agcgtgctgg tcggggactt cctgtattcg cgcggcttcc
     1681 agctgatggt cgaactcgac cgcatggaag tgatgcgcat cctcgccgat accaccaacc
     1741 ggatcgccga gggcgaggtg ctgcagctgc tgcacgtgcg caaccccgat accgacgagg
     1801 ccgcctacct gcgggtgatc gaacgcaaga cggctgtgct gttcgcggcg gcgacgcgcc
     1861 tgggcgcgct gctggccggc gccgacgcgg ccacgcagga ccgcctgaac gactacggcc
     1921 tcaacctcgg ctacgccttc cagatcgccg acgacgtgct cgactatgcc gccgacgccg
     1981 acgcgctcgg caagaacctc ggcgacgacc tcgccgaggg caaggccacc ctgccgctga
     2041 tccacgcgat cgcccacagc gagggcgcga cgcgggaccg cctgcgcgac gcgctcgcgc
     2101 acggcgacgt cgacgcgatg ccggacgtgc tggcggcgat ccacgccacc ggcggcctgg
     2161 accacagccg ccagcgtgcg cgcgcctatg cccgggccgc cgaggccgcg ctcgacggcc
     2221 tgcccggcaa cccctgcgtg tcggcgctcc gcgggctggc gcgttacgcg gtcgatcgcg
     2281 accgctgagt cagcgcgatc cggcctgcgt cgcgaaccgt tcggcgaaga agtcgcgcat
     2341 catccgctcg ccgcgacgcg tcgcgcgctc gtcgtacatg cagccgggcg ggttgttcgc
     2401 ggtcggcagc gcgaagcagt gcacggcgcc gctgaagttg acgaactgcc agtcggcgcc
     2461 cgcgtccttc atttccttct cgaacgcagg gatgtcgccg gccgtgccct tgtcgtcggc
     2521 gccgttgagc accagcaggc tcgccttcac cgcaccgggc cgcgcgggca gcgtggtgcc
     2581 gaggccgccg tggaaggtca ccacgccggc gaggtccgcg ccgctgcgcg ccagttccag
     2641 caccgtcgcg ccgccgaagc agtagccgag cgcgccgacc ttcgccggat cgagcggcgc
     2701 cctgcccgcc tgcgccttca gcacctcgag cgctttcgcc gcgcgcgcgc gcagcacgtt
     2761 gcggtcggcg tacatccgcc tggcctgggc gagcgccgcg gcatcgtcct gcggccgcac
     2821 gtccttgccg tagacgtcgg cgacgaggat gacgtagtcg cggccggcga cgtgtttcgc
     2881 cttgtcgatg gcggcgtcgg tgacgccctt ccagtccggc accatcacca ggcccggccg
     2941 cttcgaacct gcagcgtcgt agacgagcac gccgcggaag gtggtcccgt cgagcgtcca
     3001 ttcgaccggc ttcgcctgca tggcggcgaa ggccggcgcg gcggcgagca gcagggcgaa
     3061 gccggcgagc gtgcggcgca tggcggtgct cctggcgggg tcgcggaagt attggcgagc
     3121 gggcctgccg cggcgtgaaa ccagcgcccg gcggggcgcc cgcggcaggt cggagggctc
     3181 aggcgatgcc gaggccggga atcacgctga tcgaatcggg gtcgaagccg ccgagctggg
     3241 cgaaatggcg gccacgcgcg acgtagtcct tgtaggcgcc gaagctcggc gcgcccggcg
     3301 acagcagcac cacgccctcg cccgccagcg cgctgcgcgc ctggtcgatc gcctccccga
     3361 gatcccgcgc cgccgacagc gcgaagccgc gctcgcgcgc ggccggcgcc agcagcgcat
     3421 ggatcttcgg cccgttctgc cccatcgtca cgatcgccgc cggcgcatcc gcgcccatcg
     3481 ccagcgcgaa ttcgtcccag gcgatgccgc ggtcgtggcc gccgaccagc accgcgaccc
     3541 ggcgatcgcg gaagcagtcg agcgcggcga gcgtggcgtg cggcgtggtg ctgatcgaat
     3601 cgttgacgaa ggtgatgcca tcgcgggtgc ccagcgtctg caggcggttc ggcaatggac
     3661 ggaaggtggc cgcgtgcggc gcgagcgatg ccgcgtcgaa ccccagcgct tcgatcgcgg
     3721 cgagcaccgc gcagaggttg ccgcggttgt gccggccggg cagcggcagc gtcgacgtgt
     3781 ccatgatgcg ggcatcgccg cgatacagca ggtcctcgcg caggtgccag ccatccgggc
     3841 ggttgaacca gcgcacgtcg ctgtccggca gcaccatcgc ggcgagccgg ggatcggcgg
     3901 cgttgagcac ggcgatgcgc ggcctggcct cggtgaggag cttgagcttg tcctcgacgt
     3961 agcgcgcttc cgagccatgc cagtcgaggt gttcgggaaa cacgttcagc acgaccgcga
     4021 cctgcggccg caccccgctc gccgccacgt cgccggtctg gtagctcgac agctcgatcg
     4081 cccacagctc cggcgcgggc tgcggatcga ccagctccag cagcggcagg ccgatgttgc
     4141 cggcgagcgc ggtgacgtgg ccgccggccc gcagcaggtg cgcgagcagc gacgtcgtgg
     4201 tgctcttgcc cttggtgccg gtgacgcaga ccgtgcgcgc gtccgggtgt ccggcgaacc
     4261 acagcgcggt gccgccgacg aagcgcgttc cgcgcgaggc ggcaccgacc gcctccccgc
     4321 ggtacggact gatgccgggc gacttgacca ccacgtcgaa cgccgccagc gcatcggccg
     4381 tcggcggatc gatgtccgtc tgcaggtgcg cgtcgccgag cgcggccgca tcgatggctt
     4441 ccgccgcgtt gcagaacaac gtcagcggca gcgccggcag gcggccgcgg atcgcgcgcc
     4501 aggcggcgcg gccttcgcgg ccccagcccc agagtgcgac gcgacggccc gcgagccggc
     4561 cgatgtcagt cggcgaaccg gacacgcacc gcctcccaca ccgccgcggg aatgcggtgg
     4621 tcgccctcga tcgccagcag cggcgcgacg tcaggcgcct catcgccgag ctgcggccgg
     4681 atttcccgcg cgaagcgctc gacgatggcg tcctcgcgcc attccggccg cgtcgccagc
     4741 gtcgccatcg ccgcgcgcga ttcgcggccc tcgccgacgc attcgaacgg tttgtggtcg
     4801 cggtattcga gcagcgcgtc gtagcccggg acctgcgaaa ggtcgtcgag caggttgcgc
     4861 ccgaagatcg cggtcagccg cggcttgggc atgaacggcg ccagcgcgag gaacacgaag
     4921 tggcacttcg ggcacacccc gcaccagcgg ttgaccggcc gctcgccgag gatgtggaag
     4981 ttgcggttgc agctggagaa ccaggcgtcg tagtggtcgg tcttcgcgaa ctggcgcgcc
     5041 accgcgagtt cgctcagcgg acgcagcagc gagtagtagc gcaggtcggc ggccacgtgg
     5101 cgctggacgt aatcgccgaa ggcctgttcg caggcccagc ccttggacca ctggtggttc
     5161 acctcgcccg tgccctcgat caggctgccg tagctggccg agcgctcgtt ggagaacacc
     5221 acctggtcga cgccgagcag gatcgccgcg aagacgagga tcgcggaatt gagcacggtg
     5281 accgggatgt ggccgttcca cgcgccctgg cggttgtact cgaacagggc cggcgccagc
     5341 gcgcggccga tgttgagcgt gggcaggccg gtgcgctcgg cgcaggcgcg gatcagctgc
     5401 gagccgccga tccaggtgac tgtctgcgcg atgccggcgc cacgcagcgc ctcgatcgac
     5461 accagcgaat ccttcccgcc gccgattgcg acgagcgcgt gttcgcgcag ccccaacgcg
     5521 ggtgcgggag catcgctgcc gtcgcgatgc gggaagcgga tgcggccatg caggtcgagg
     5581 ccattgcgat acgcgaattc acccaggccg ttgacgtaca ccagctccag cagggccgcg
     5641 gtatcggcat cgatgtcgta ggagtcgatg cggatgtctc cgggcaccgc tgccttgtaa
     5701 tagctcacgc cggcgatgag gtgcagcagg cgcagcgcct gtaccgcagc cgcggcacgg
     5761 gcaccttcaa gcgcgaacgg cgcccccggc acggtgatgg tctccaccag ttccgggccg
     5821 tcgtcgaacg cgtacaccag ccgcgccacg ccgctcgcgg gatcgaagcc gcaacgcacg
     5881 aagcgga
//
LOCUS       DATIQC010000249         2397 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_617103, whole genome shotgun sequence.
ACCESSION   DATIQC010000249 DATIQC010000000
VERSION     DATIQC010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2397)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2397)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2397
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_617103"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2215
                     /gene="mfd"
                     /locus_tag="VLM17_05270"
     CDS             <1..2215
                     /gene="mfd"
                     /locus_tag="VLM17_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HSR65000.1"
                     /translation="LADWPAFAANDARFAIAVAPFDDGFALDAPALCVLTERQLFPER
                     AAQPRRRKRAGREPEAIIRDLGELREGAPIVHEDHGVGRYRELVSLDVGGMPGEFLDI
                     EYAKGDRLYVPVAQLHLINRYSGASEDTAPLHSLGGEQWAKAKRKAAEKVRDVAAELL
                     EIQAKRQARAGLAIDLDRATYEPFAAAFPFEETPDQHASIEAVLRDLQSAQPMDRVVC
                     GDVGFGKTEVAVRAAFASAIGGKQVAVLVPTTLLAEQHYRNFRDRFADWPIRVEVLSR
                     FKTKNENEAELEKVADGTIDVIVGTHRLLQKDVRFKDLGLVIVDEEQRFGVRQKEALK
                     ALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPAHRLAVQTFVVPWDDYQLREA
                     FQRELSRGGQVYFLHNDVESIGRMQRQLGELVPEARIGVAHGQMPERELERVMLDFHK
                     QRFNVLLSTTIIESGIDIPNANTIVIHRADRFGLAQLHQLRGRVGRSHHRAYAYLVVP
                     DRKSITADARKRLDAIEAMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLY
                     TELLERAVHSIRAGRLPDVDLVEARGAEVELHVPALIPDDYLPDVHTRLTLYKRISSA
                     RDAQELRDLQVEMIDRFGLLPDAARHLFATAELKLDATALGLRKLDLGPAGGRVQFVE
                     KPRVDPMAVIQLIQKQPKHYQLDGPDKLKVKLDLPDAGARVQAARGLLAALRPAA"
BASE COUNT          387 a          903 c          804 g          303 t
ORIGIN      
        1 gctcgcggac tggcccgcgt tcgccgccaa cgatgcgcgc ttcgcgatcg cggtggcgcc
       61 gttcgatgac ggcttcgcgc tcgacgcgcc cgcgctgtgc gtgctcaccg agcgccagct
      121 gttccccgag cgcgccgcgc agccgcgccg gcgcaagcgc gcggggcgcg agccggaagc
      181 gatcatccgc gacctcggcg aactgcgcga aggcgcgccg atcgtgcacg aggaccacgg
      241 cgtggggcgc tatcgcgagc tcgtgagcct cgacgtcggc ggcatgcccg gcgaattcct
      301 cgacatcgaa tacgccaagg gcgaccgcct gtacgtgccg gtcgcgcagc tgcacctgat
      361 caaccgctac tcgggcgcct ccgaggacac cgccccgctg cactcgctcg gtggcgagca
      421 gtgggcgaag gcgaagcgga aggccgccga aaaggtccgc gacgtcgccg ccgaactgct
      481 cgagatccag gccaagcgcc aggcgcgcgc cggcctcgcg atcgacctcg accgcgcgac
      541 ctacgagccc ttcgccgccg cctttccgtt cgaggaaacc ccggaccagc acgcctcgat
      601 cgaggccgtg ctgcgcgacc tgcagtccgc gcagccgatg gaccgggtgg tgtgcggcga
      661 cgtcggcttc ggcaagaccg aggtcgcggt gcgcgccgcc ttcgcctccg cgatcggcgg
      721 caagcaggtc gccgtgctgg tgccgaccac gctgctcgcc gagcagcact accgcaactt
      781 ccgcgaccgc ttcgccgact ggccgatccg ggtcgaggtg ctctcgcgct tcaagaccaa
      841 gaatgagaac gaagcggaac tcgagaaagt cgcggacggc acgatcgacg tgatcgtcgg
      901 cacccaccgc ctgctgcaga aggacgtgcg cttcaaggac ctcggcctgg tcatcgtcga
      961 cgaggagcag cgcttcggcg ttcgccagaa ggaggcgctg aaggcgctgc gcgccaacgt
     1021 gcacctgctc accctcaccg cgacgccgat cccgcgcacg ctcaacatgg cgatggccgg
     1081 cctgcgcgac ctgtcgatca tcgcgacgcc gcccgcgcac cgcctcgccg tgcagacctt
     1141 cgtcgtgccg tgggacgact accagctgcg cgaggccttc cagcgcgagc tctcgcgcgg
     1201 cggccaggtg tacttcctgc acaacgacgt ggagagcatc gggcgcatgc agcgccagct
     1261 cggcgaactg gtgccggagg cgcgcatcgg cgtcgcccac gggcagatgc ccgagcgcga
     1321 actcgagcgg gtgatgctcg acttccacaa gcagcgcttc aacgtgctgc tgtcgacgac
     1381 catcatcgaa tcgggcatcg acatccccaa cgccaacacc atcgtcatcc accgcgccga
     1441 ccggttcggc ctcgcccagc tgcaccagct gcgcggacgc gtcggccgct cgcaccaccg
     1501 cgcctacgcc tacctcgtcg tgcccgaccg caagtcgatc accgccgatg ccaggaagcg
     1561 gctggacgcc atcgaggcga tggacgagct cggcgccggc ttcaccctgg ccacccacga
     1621 cctcgagatc cgcggcgccg gcgaactgct cggcgaggac cagagcgggc agatggcgga
     1681 agtcggcttc agcctgtaca ccgaactgct cgagcgcgcc gtgcactcga tccgcgccgg
     1741 gcgcctgccg gacgtggacc tggtcgaggc gcgcggcgcc gaggtggaac tgcacgtgcc
     1801 ggcgctcatc ccagacgact acctgcccga cgtgcacacc cgcctgaccc tgtacaagcg
     1861 catcagcagc gcgcgcgacg cgcaggaact gcgcgacctg caggtcgaga tgatcgaccg
     1921 cttcggcctg ctgcccgacg ccgccaggca cctgttcgcg accgccgagc tcaagctcga
     1981 cgccaccgcg ctcggcctgc gcaagctcga cctcggcccc gccggtggcc gcgtgcagtt
     2041 cgtcgagaaa cccagggtcg acccgatggc ggtgatccag ctgatccaga agcagccgaa
     2101 gcactatcag ctcgatggcc ccgacaagct gaaggtcaag ctcgacctgc ccgatgcagg
     2161 cgcgcgcgtg caggcggcac gcggactgct cgcggcactg cggccggcgg cgtagcggcc
     2221 tcgcggcata gcggcatcgt cccgccgctg ccgcgcgcca cgcgctagcc gtgcatccac
     2281 ggcgcggcca ggcacgcggc gaggcggcgc aaccatgcgc gcacggccga cgaaggcgcg
     2341 cgcactgccg gcgcaggcga tcgcgccgga cccggcgccg gttcggcatc gagcacg
//
LOCUS       DATIQC010000250         1721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_122466, whole genome shotgun sequence.
ACCESSION   DATIQC010000250 DATIQC010000000
VERSION     DATIQC010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122466"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="VLM17_05275"
     CDS             <1..620
                     /locus_tag="VLM17_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007507442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HSR65001.1"
                     /translation="QARDAQAYHARLQPLGRRRLVAADDVDRARAAAGNAPAQVSAAR
                     AARLELEHGPRREELAQGQAALQAAQAQATAQEATLQKLTLVAPRDARIDTLPYRLGD
                     QAPVGAPLAILLVGDAPYARIYVPEPLRARVHVGDPVRVHVDGRHDALQGIVRMVRSE
                     PSFTPYYALTGDDAARLVYLAEVALAPADARDLPAGLPVRVDLGR"
     gene            646..1569
                     /locus_tag="VLM17_05280"
     CDS             646..1569
                     /locus_tag="VLM17_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR65002.1"
                     /translation="MVARGLTRRFGDLVAVDHVDLAVTRASVYGFLGPNGSGKTTTIR
                     MLCGLLAPSAGDIEVLGLRIPEQAEALRRRIGYMTQKFSLFEDLTVRENLEFLAAVQG
                     VPKARTRGRIDVLLARYHFQDRQQQLAGTLSGGQKQRLALAGAVIHEPELLFLDEPTS
                     AVDPESRREFWERLFDLADAGTTILVSTHYMDEAERCHRLAVLDLGVLVADGTPAELT
                     HALEGRTLAVQAGEPRRVHRLLEGAPGVLSVAQIGNTLRVLTTEPGVRSQVGETLARD
                     GVQADVADVPPNLEDVFVSATRGRGEREGAA"
     gene            1566..>1721
                     /locus_tag="VLM17_05285"
     CDS             1566..>1721
                     /locus_tag="VLM17_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65003.1"
                     /translation="MSMRRLWAVMLKELRQLRRDRITLAMIVGIPVLQLVLFGYAINL
                     NLRHLSAA"
BASE COUNT          232 a          645 c          626 g          218 t
ORIGIN      
        1 ctcaggcgcg cgatgcgcag gcctatcacg cgcggttgca gccgctcggc cgccggcgcc
       61 tggtcgccgc ggacgacgtc gaccgcgcgc gcgccgccgc gggcaacgcc ccggcgcagg
      121 tgagcgccgc ccgggccgcg cggctggaac tcgagcatgg cccgcgccgc gaagagctcg
      181 cgcagggcca ggccgcgctg caggccgcgc aggcgcaggc gaccgcgcag gaggcgacgc
      241 tgcagaagct caccctggtc gcgccgcgcg acgcgcgcat cgacaccctt ccctacaggc
      301 tcggcgacca ggcgccggtc ggcgccccgc tggccatcct gctggtcggc gacgcgccct
      361 acgcgcgcat ctacgtgccc gagccgctgc gcgcgcgcgt gcacgtcggc gacccggtgc
      421 gggtgcatgt cgacgggcgc cacgacgcgc tccagggcat cgtgcgcatg gtgcgcagcg
      481 aaccgagctt caccccgtac tacgcgctga ccggcgacga cgcggcgcgc ctggtctacc
      541 tcgccgaggt ggcgctggcg cccgcggacg cacgcgatct gcccgcgggc ctgccggtac
      601 gggtggatct cggccgatga gcgccggggg atgaacgacg aagcgatcgt cgcgcgtggc
      661 ctgacccgcc gcttcggcga cctggtcgcg gtcgaccacg tcgacctggc ggtgacgcgc
      721 gccagcgtgt acggcttcct cggcccgaac ggctccggca agaccaccac catccgcatg
      781 ctgtgcggcc tgctcgcgcc gagcgccggc gacatcgagg tgctcggcct gcgcatcccg
      841 gaacaggccg aggcgttgcg ccggcgcatc ggctacatga cccagaagtt ctcgctgttc
      901 gaggacctca ccgtgcgcga gaacctcgag ttcctcgccg ccgtgcaggg cgtgccgaag
      961 gcgcgcacgc gcgggcgcat cgacgtgctg ctcgcgcgct accacttcca ggaccgccag
     1021 cagcagctcg cgggcacgct cagcggcggc cagaagcagc gcctcgcgct ggccggggcg
     1081 gtgatccacg agccggaact gctgttcctc gacgagccga ccagcgcggt ggatccggag
     1141 tcgcggcgcg aattctggga gcgcctgttc gacctcgccg acgccggcac caccatcctc
     1201 gtgtcgaccc actacatgga cgaggccgag cgctgccacc ggctcgccgt gctggacctt
     1261 ggcgtgctgg tcgccgacgg cacgccggcg gaactcacgc atgcgctgga agggcgcacg
     1321 ctggcggtgc aggccggcga gccgcggcgc gtgcaccggc tgctggaagg cgcgcccggc
     1381 gtgctcagcg tcgcccagat cggcaacacc ttgcgggtgc tgaccaccga gcccggcgtg
     1441 cgctcgcagg tcggcgaaac gctggcgcgc gacggcgtcc aggccgacgt cgccgacgtg
     1501 ccacccaacc tcgaggacgt gttcgtctcc gccacgcgtg gacgcggcga acgggagggc
     1561 gccgcatgag catgcgccgg ctgtgggcgg tgatgctcaa ggagttgcgg cagttgcgcc
     1621 gcgaccgcat caccctggcg atgatcgtcg gcatcccggt gctgcagctg gtgctgttcg
     1681 gctacgcgat caacctcaac ctgcgccacc tgtcggcggc g
//
LOCUS       DATIQC010000251         2776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_511099, whole genome shotgun sequence.
ACCESSION   DATIQC010000251 DATIQC010000000
VERSION     DATIQC010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511099"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..756)
                     /locus_tag="VLM17_05290"
     CDS             complement(175..756)
                     /locus_tag="VLM17_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4126 domain-containing protein"
                     /protein_id="HSR65004.1"
                     /translation="MSQAHLFALGVLLAWLAGVRVYLTVFGVGLAGLLGWVDLPASLQ
                     ATESPWVLGVSGALALTEFFADKIPGVDSVWDLLHTLLRVPVGAFLAASAMSPDGQLH
                     AAMLATGAGVALASHLLKAGPRALLNASPEPVTNWTASIGEDATVLGGLALAFSHPWI
                     ALVLVVAIGVSIALVAWWLWRALFRRRPRTAAS"
     gene            840..1571
                     /locus_tag="VLM17_05295"
     CDS             840..1571
                     /locus_tag="VLM17_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6776 family protein"
                     /protein_id="HSR65005.1"
                     /translation="MSDAGPPPAPPPVPAVPAGQGKGLAYAVIVVFLLALAFGAWGLW
                     RVLAPAPDDPRPRLRAQQARIGALEQQVATLSRSDQISRDANRDLQCTLAERDEEIAG
                     LRADLAFYERFVGGTAPRHGLGVQALQLQSEGGRAWHFAATLTQTATRDALNQGRLTR
                     AVEGSRGGRMQHLDWAALRQQPNAPGVAYAFKYFQQVEGDVLLPAGLQPIRVTARLQP
                     AGGEAVEQSFTWRDATSAPATDGRR"
     gene            1632..2006
                     /gene="erpA"
                     /locus_tag="VLM17_05300"
     CDS             1632..2006
                     /gene="erpA"
                     /locus_tag="VLM17_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HSR65006.1"
                     /translation="MESTTDASAPDYQSLQRPLDFTAAAARKVRELVAEEGNAALKLR
                     VYIQGGGCSGFQYGFEFDEQQGEDDLAVETDGVTLLVDPLSLQYLMGAEVDYSESLHG
                     AQFVIRNPNAKSTCGCGSSFTV"
     gene            2132..>2776
                     /locus_tag="VLM17_05305"
     CDS             2132..>2776
                     /locus_tag="VLM17_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005914180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HSR65007.1"
                     /translation="MPATPFAFLDGALDRADHLRDDAGALAALWPQARVILLDDDGRA
                     LADAAKTLHAADGAGLGGGPGTAIFLGLRDGQPWFAQRAATIAVDAPERVDLRAAAGH
                     WPAIDATVFAQARAVLHWHARHRHCGACGGAVAFVRGGWLGRCAQCGAEHYPRTDQAI
                     IAAVTDGARLLLGRQAGWPRNRWSVLAGFVEPGESLEQTVAREIMDESGVRVRSA"
BASE COUNT          388 a         1068 c          997 g          323 t
ORIGIN      
        1 gtgggggggt gggaattcgg cgcgcagcag cgggtcgctg ctggcgcacg cggcaggcga
       61 gacctgcacg gataggggcg gtccggacat cgtggctcct gtcggagccg cacgcaccgc
      121 actgcccctg aatacgagaa aggacggatt ctccccgtgc gaccggccag ccgctcagga
      181 cgcggcggta cgcggccgac gccggaacag cgcgcgccac agccaccacg ccaccagtgc
      241 gatcgacacg ccgatcgcca ccaccagcac cagcgcgatc cacggatggc tgaacgcgag
      301 cgccagtccg ccgaggacgg tcgcatcctc gccgatcgac gcggtccagt tggtcaccgg
      361 ttcgggcgac gcgttgagca gcgcgcgcgg ccccgccttc agcaggtggc tggcgagcgc
      421 gacgccggca ccggtggcca gcatcgccgc gtgcagctgg ccgtcgggcg acatcgccga
      481 cgcggcgagg aacgcaccga ccggtacccg caacagggta tgcaacaggt cccacaccga
      541 atccaccccg ggaatcttgt cggcgaagaa ctcggtcagc gcgagcgcgc cggatacgcc
      601 cagcacccac ggcgattcgg tcgcctgcag cgacgcgggc aggtcgaccc agcccagcag
      661 tcccgccagc ccgacgccga acacggtgag gtacacccgc acgccggcca gccaggccag
      721 cagcacgccg agcgcgaaca ggtgggcctg gctcatgcgg cacctccgtg ggacatggtc
      781 ccgggttata cgtcgaagcg gcttgacggc ggtcgaagcc gctggctata ccggccgcca
      841 tgagcgatgc cggcccgccg cccgccccgc cgcccgtgcc cgccgtcccg gccgggcagg
      901 gcaagggtct cgcgtacgcg gtgatcgtgg tgttcctgct cgcgctcgcc ttcggcgcct
      961 ggggcctgtg gcgggtgctg gcgccggcgc cggacgatcc gcgcccgcga ctgcgcgcgc
     1021 agcaggcgcg catcggtgcg ctcgagcagc aggtcgccac cctgtcgcgc tccgaccaga
     1081 tcagccgcga cgccaaccgc gacctgcagt gcaccctcgc cgagcgcgac gaggagatcg
     1141 ccgggctgcg cgccgacctc gccttctacg agcgtttcgt cggtggcacc gcgccgcgcc
     1201 acggcctcgg cgtgcaggcg ctgcagctgc agagcgaggg cggccgggcc tggcacttcg
     1261 ccgccacgct gacccagacc gcgacccgcg acgcgctcaa ccagggccgg ctgacccgcg
     1321 cggtcgaggg cagccgcggc ggccgcatgc agcacctcga ctgggcggcg ctgcgccagc
     1381 agccgaatgc gccgggtgtc gcctacgcgt tcaagtactt ccagcaggtg gaaggcgacg
     1441 tgctgctgcc cgcgggcctg cagccgatcc gggtgaccgc gcgcctgcag ccggccggcg
     1501 gcgaggcggt ggagcagtcg ttcacctggc gggacgcgac ctcggcgccg gcgacggacg
     1561 gccgccgctg agcgcggcgc cgcctcccgc gcgcggttga atcgtcccgc cgcgcgcccc
     1621 atcctgtgcg gatggaaagc accaccgacg cctccgcgcc cgactaccag tcgctgcagc
     1681 gcccgctcga cttcaccgcc gccgccgcgc gcaaggtgcg cgaactggtc gccgaggaag
     1741 gcaacgcggc gctcaagctg cgcgtgtaca tccagggcgg cggctgctcc gggttccagt
     1801 acggcttcga gttcgacgag cagcagggcg aggacgacct cgcggtcgaa accgacggcg
     1861 tcaccctgct ggtcgacccg ctcagcctgc agtacctgat gggcgccgag gtcgactaca
     1921 gcgaaagcct gcacggcgcg cagttcgtga tccgcaaccc gaacgcgaag agcacctgcg
     1981 gctgcggcag cagcttcacc gtctgagcaa cgcgcgcggc ggagcgaccg acgccgccag
     2041 ccggtcccgt cgctcgccgg cgccgcgccg cggccgccat tggcgccgtc cccgcgaccg
     2101 ccgacaatgc gcgttcccga tggagcgccg aatgcccgca accccgttcg ccttcctcga
     2161 cggcgcgctc gaccgcgccg accacctgcg cgacgacgcc ggcgcgctcg cggcgctgtg
     2221 gccgcaggcg cgggtgatcc tgctcgacga cgacggccgc gcgttggccg acgcggcgaa
     2281 gacgctgcac gcggccgatg gcgccggcct cggcggcggc ccgggcaccg cgatcttcct
     2341 cggcctgcgc gacggccagc cgtggttcgc gcagcgcgcc gccaccatcg ccgtcgatgc
     2401 ccccgaacgc gtcgacctgc gcgccgccgc cggccactgg ccggcgatcg acgccaccgt
     2461 gttcgcgcag gcgcgcgccg tgctgcactg gcacgcgcgc catcgccatt gcggcgcgtg
     2521 cggcggcgcc gtcgcgttcg tgcgcggcgg ctggctgggt cgttgcgcgc aatgcggcgc
     2581 ggaacactac ccgcgcaccg accaggcgat catcgccgcg gtcaccgacg gcgcgcgcct
     2641 gctgctcggg cgccaggcgg gctggccgcg caaccgctgg tcggtgctgg ccggcttcgt
     2701 cgagcccggc gaatcgctgg agcagaccgt cgcccgcgag atcatggacg agtccggcgt
     2761 gcgcgtgcgc agtgcg
//
LOCUS       DATIQC010000252         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_687905, whole genome shotgun sequence.
ACCESSION   DATIQC010000252 DATIQC010000000
VERSION     DATIQC010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687905"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1748
                     /gene="dnaE"
                     /locus_tag="VLM17_05310"
     CDS             <1..>1748
                     /gene="dnaE"
                     /locus_tag="VLM17_05310"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HSR65008.1"
                     /translation="TGERLHLELTRTGRDGEEAFNAFALHAASARGIPVVASNDARFL
                     ERDGFDAHEARVCIATGRVLDDPKRPRDYGAEQYLKSSEEMAALFRDAPDAIDNTLAL
                     ATRCNLELRLGTYFLPAFPVPDDETLDSWIRSQARDGLARRLAKHPPAPGRTRDEYEA
                     RLEIELDVIVKMGFPGYFLIVADFINWAKDHDIPVGPGRGSGAGSLVAWALGITDLDP
                     LPYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDYVAGKYGRDRVSQIITYGTMAAK
                     AVVRDSGRVLGHPYGFVDGIAKLIPNTLGISLDDALGESDAARKNTELASAELIQRMQ
                     AEDEVRDLLTLARELEDLTRNAGKHAGGVVIAPSPLSDFCPLFAEHDEGGRGRNPVTQ
                     FDKDDVESIGLVKFDFLGLRTLTIIDWAVKAINRRREATGEAALDITALPLDDRPSYE
                     LFARGDTVAVFQFESRGMRELLKRAKPATFEDIIALAALFRPGPLGSGMDRDWVDRKH
                     GNAAVTYPHPSLEPVLAPTYGVIVYQEQVMQIAQVLAGYTLGASDMLRRAMGKKKPEE
                     MAKQRQTFVDGAMAGG"
BASE COUNT          299 a          632 c          571 g          246 t
ORIGIN      
        1 caccggcgaa cgcctgcacc tggagctcac ccgcaccggc cgcgacggcg aggaagcctt
       61 caatgcgttc gcgctgcacg cggcgtcggc gcgcggcatc ccggtggtcg cgagcaacga
      121 cgcgcgcttc ctcgaacgcg acggcttcga cgcgcacgag gcacgcgtgt gcatcgccac
      181 cggccgcgtg ctcgacgacc ccaagcgccc gcgcgactac ggcgccgagc agtacctgaa
      241 atcatcggag gaaatggccg ccctcttccg cgatgcgccg gacgcgatcg acaacacgct
      301 cgcgctggcc acccgctgca atctcgaact gcgccttggc acgtacttcc tgcccgcgtt
      361 cccggtgccg gacgacgaga cgctcgacag ctggatccgc agccaggcgc gcgacggcct
      421 cgccaggcgc ctggccaagc atcctcctgc acccggacgg acacgcgacg aatacgaagc
      481 gcggctggag atcgagctcg acgtcatcgt caagatgggg ttccccggct acttcctgat
      541 cgtcgccgac ttcatcaact gggcgaagga ccacgacatc ccggtcggcc cgggccgcgg
      601 ttccggcgcc ggttcgctgg tggcgtgggc gctgggcatc accgacctgg acccgctgcc
      661 ctacgacctg ctgttcgagc gcttcctcaa tcccgagcgc gtgtcgatgc cggacttcga
      721 catcgacttc tgcatggaca agcgcgacca ggtgatcgat tacgtcgccg gcaagtacgg
      781 ccgcgaccgc gtcagccaga tcatcaccta cggcaccatg gcggcgaagg cggtagtgcg
      841 cgactccggg cgcgtgctcg ggcatccgta cggcttcgtc gacggcatcg ccaagctgat
      901 cccgaacacg ctcggcatct cgctggacga tgcgctcggc gaatcggacg cggcgaggaa
      961 gaacacggaa ctggcctccg ccgagctcat ccagcgcatg caggccgagg acgaggtgcg
     1021 cgacctgctc acgctggcgc gcgagctcga ggacctgacc cgcaacgccg gcaagcacgc
     1081 cggcggcgtg gtgatcgcgc cgtcgccact gtcggatttc tgcccgctgt tcgccgaaca
     1141 cgacgaaggc ggccgcggcc gcaacccggt cacccagttc gacaaggacg acgtcgaatc
     1201 gatcggcctg gtcaagttcg acttcctcgg cctgcgcacg ctgaccatca tcgactgggc
     1261 ggtgaaggcc atcaaccgcc ggcgcgaggc caccggcgaa gccgcgctgg acatcaccgc
     1321 gctgccgctc gacgacaggc cgtcgtacga gctcttcgcg cgcggcgaca cggtcgcggt
     1381 gttccagttc gaatcgcgcg gcatgcgcga actgctcaag cgcgcgaaac ccgccacctt
     1441 cgaggacatc atcgcgctcg ccgcgctgtt ccgccccggc ccgctcggct cggggatgga
     1501 ccgcgactgg gtcgaccgca agcacggcaa cgccgcggtc acctacccgc acccatcgct
     1561 ggaacccgtt ctcgcgccga cctacggcgt catcgtgtac caggaacagg tgatgcagat
     1621 cgcgcaggtg ctggcgggct acacgctcgg cgcgtcggac atgctgcgtc gggcgatggg
     1681 caagaagaag ccggaggaga tggccaaaca gcgccagacc ttcgtcgatg gcgcgatggc
     1741 cggcggcg
//
LOCUS       DATIQC010000253         2669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_228512, whole genome shotgun sequence.
ACCESSION   DATIQC010000253 DATIQC010000000
VERSION     DATIQC010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2669
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228512"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..1031
                     /locus_tag="VLM17_05315"
     CDS             102..1031
                     /locus_tag="VLM17_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006376775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSR65009.1"
                     /translation="MDLEAWSARLKVLADATRVRLLALLEREELTVAELSSITRLAQP
                     RVSTHLAKLKEAGLVRDRRAGVSAYYRFDEDALDPAQRALWQSISSGSDDPLLRQDAE
                     RVADVLAMRAADQNWADSVAGDMERHYSPGRTWEALARSALPLLQPGDVLDVASGDGV
                     LAELLAPHSRRYVCVDASPRVVAAARERLRPFANVEVREGDMHALPFADASFDLVVLM
                     HALTYATKPAVAVAEAARVLRPGGRMLLSSLGKHEHRNVVEAYGHANLGFTEKELRRF
                     ADRAGLRIRSAASITREKRPPHFEVIALIGEKA"
     gene            1028..2128
                     /locus_tag="VLM17_05320"
     CDS             1028..2128
                     /locus_tag="VLM17_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HSR65010.1"
                     /translation="MKTLPWLHPGRVAKLEDALARRILVLDGAMGTMIQQHGLQEADY
                     RGERFAQGYDHLFAAEGHAHGEDCGCGGHDQRGNNDLLTLTRPDIIRGIHDAYLAAGA
                     DLVETNTFNSTAISLADYHLQHLVRELNREGARLARAACDAAEAADPTRPRFVVGVLG
                     PTSRTASLSPDVNRPGFRATSFDELAEAYREAARGLVEGGSDVLMVETIFDTLNAKAA
                     LFAIDDVFAESGGRLPVMISGTITDASGRTLSGQTAEAFWYSLRHAQPLAIGLNCALG
                     AKDLRAHLDVLAQVADTRVSTHPNAGLPNAFGGYDEAPEDMAATLGEFARAGMLNIVG
                     GCCGTTPAHIAAIAGAVRGLPPRAVPSLEAAA"
     gene            2125..>2669
                     /locus_tag="VLM17_05325"
     CDS             2125..>2669
                     /locus_tag="VLM17_05325"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HSR65011.1"
                     /translation="MTLARNTRLAGLEPLQITPESNFVNVGERTNVTGSAQFKKLILE
                     GRYDEAVAVARQQVENGAQVLDVNMDEGLLDSEQAMVAFLHLIAAEPDIARVPVMVDS
                     SKFSVIEAGLKCLQGKGIVNSISMKEGEAEFLRQARLVRRYGAAVVVMAFDEEGQADT
                     LERRKTICGRAYELLTQEVGFP"
BASE COUNT          409 a          967 c          924 g          369 t
ORIGIN      
        1 tataccccag tacgcagacg gatgcggtcc ggtttcgctt gaccggccgg gcgcgaaggc
       61 cgacaatcat ctttgtatcg cgatgatgag atattgcaat catggacctc gaagcctggt
      121 cagcccgatt gaaagtcctc gccgacgcga cccgcgtccg gctgctggcc ctgctcgaac
      181 gcgaggaact gacggtcgcc gaactctcgt cgatcacccg gctggcccag ccccgggtct
      241 cgacccatct ggcgaagctg aaggaagccg ggctggtccg cgaccgtcgc gccggggtgt
      301 cggcctatta ccgcttcgac gaggacgcgc tcgacccggc ccagcgcgcg ctgtggcagt
      361 cgatcagcag cggcagcgac gatccgctgc tgcgccagga cgccgagcgc gtcgccgacg
      421 tgctggcgat gcgcgcagcc gaccagaact gggctgacag cgtggccggc gacatggagc
      481 ggcactactc cccgggccgc acctgggaag cgctggcgcg cagcgcgttg ccgttgctgc
      541 agccgggcga cgtgctcgac gtcgcctccg gcgacggcgt gctggccgag ctgctggcgc
      601 cgcactcgcg tcgctacgtg tgcgtggatg ccagcccgcg ggtggtggcc gccgcgcgcg
      661 agcggctgcg gcccttcgcc aatgtcgaag tgcgcgaggg cgacatgcac gccctgccct
      721 tcgccgacgc cagcttcgac ctggtcgtgc tgatgcacgc gctgacctac gccacgaagc
      781 cggcggtcgc cgtcgccgaa gccgcgcgcg tgctgcgccc gggcggccgc atgctgctgt
      841 ccagcctggg caagcacgag caccgcaacg tggtcgaggc ctacggccac gccaacctcg
      901 gcttcaccga gaaggagctg cgtcgtttcg ccgacagggc cgggctgcgc atccgctccg
      961 ccgccagcat cacccgcgag aagcgccccc cgcacttcga ggtgatcgcg ctcatcgggg
     1021 aaaaggcatg aagacgctgc cctggctgca tcccgggcgg gtggcgaagc tggaggacgc
     1081 gctggcccgg cgcatcctcg tgctcgacgg cgcgatgggg acgatgatcc agcagcacgg
     1141 cctgcaggaa gccgattacc gtggcgagcg tttcgcgcag ggctacgacc atctgttcgc
     1201 cgccgaaggc cacgcgcatg gcgaggactg cgggtgcggc gggcacgacc agcgcggcaa
     1261 caacgacctg ctgacgctca cgcgcccgga catcatccgc ggcatccacg acgcctacct
     1321 cgccgccggc gccgacctgg tcgagaccaa caccttcaat tcgaccgcga tttcgctggc
     1381 ggattaccac ctgcagcacc tggtccgcga actcaaccgc gaaggcgccc gcctggcgcg
     1441 cgccgcctgc gacgccgcgg aggctgcgga tcccacgcgg ccgcgcttcg tcgtcggggt
     1501 gctcggcccg acctcgcgca ccgcctcgct gagccccgac gtcaaccggc cggggttccg
     1561 cgcgaccagc ttcgacgaac tcgccgaggc ctaccgcgaa gccgcccgcg ggctggtcga
     1621 gggcggcagc gacgtgctga tggtcgagac catcttcgac acgctcaacg ccaaggccgc
     1681 gctgttcgcc atcgacgacg tgttcgcgga atccggcggc cggttgccgg tcatgatttc
     1741 cggcacgatc accgacgcct ccggccgcac cctgtccggg cagaccgcgg aggccttctg
     1801 gtattcgctg cgccacgcgc agccgctggc gatcggcctc aactgcgcgc tcggcgcgaa
     1861 ggacctgcgc gcccacctcg acgtgctggc gcaggtcgcc gacacccgcg tcagcacgca
     1921 tcccaacgcc ggcctgccga acgccttcgg cggctacgac gaggcgccgg aggacatggc
     1981 cgcgacgctc ggcgagttcg cccgcgccgg catgctcaac atcgtcggcg gctgctgcgg
     2041 caccacgccg gcgcacatcg cggcgatcgc cggggcagtg cgcgggttgc cgccgcgcgc
     2101 ggtcccgtcg ctggaggccg ccgcgtgacc ctcgcgcgca acacccggct ggccggcctc
     2161 gagccgctgc agatcacgcc cgagtccaac ttcgtcaacg tcggcgagcg gaccaacgtg
     2221 accggctcgg cgcagttcaa gaagctgatc ctcgaaggcc gctacgacga ggcggtggcg
     2281 gtggcgcgcc agcaggtgga gaacggcgcg caggtcctcg acgtcaacat ggacgaagga
     2341 ctgctcgact ccgagcaggc gatggtggcg ttcctgcacc tgatcgccgc cgagcccgac
     2401 atcgcgcgcg tgccggtgat ggtcgacagc tcgaagttca gcgtgatcga ggccgggctg
     2461 aagtgcctgc agggcaaggg catcgtcaac tccatctcga tgaaggaagg cgaagccgag
     2521 ttcctgcgcc aggcgcggct ggtgcgccgc tacggcgccg cggtcgtggt gatggccttc
     2581 gacgaggagg ggcaggccga caccctggag cgccgcaaga ccatctgcgg ccgcgcctac
     2641 gagctgctga cgcaggaggt cggcttccc
//
LOCUS       DATIQC010000254         3378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_334710, whole genome shotgun sequence.
ACCESSION   DATIQC010000254 DATIQC010000000
VERSION     DATIQC010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334710"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1399)
                     /locus_tag="VLM17_05330"
     CDS             complement(<1..1399)
                     /locus_tag="VLM17_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004426558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HSR65012.1"
                     /translation="MQTEPVLHPAADWLRRRFRASDGWFIGLAAMVGALAGAMTVLQG
                     RLAHVLQAHFFGLPPQARLSASLSLTPAQLLVLPLGGLLLGVFTLVVRARRRALVDAV
                     EANALHGGRMSMRDSLIVAGQTLLSNGFGASVGLEAAYAQMGAGAGSHLGRILRLRRA
                     DMRTLVGAGAGAAIAAAFGAPLTGAFYAFEIVIGAYSPSALAPVAAAALAGTFVAQSM
                     GLTPYLLSAPPVAPLHSSDYAIYIALGMTCALVGIAIMRLVARVERTVNGTRLPAWLR
                     PAIGGLLLVPLAALSPQVLSAGHGALHVDLAAGVALSFLATVFLLKCAASVLSLGFGF
                     RGGLFFASLFLGTLLGALFARCVDLVVGFPLVDAANASLVGMAALAAGIIGSPMTMAM
                     LVLEATHDFVLSSAVMAAVLVTSTLVRQVFGYSFSTWRLHLRGESIRSARDVGWMRLL
                     TAGRMMRDTQVAPDSL"
     gene            complement(1452..2192)
                     /locus_tag="VLM17_05335"
     CDS             complement(1452..2192)
                     /locus_tag="VLM17_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HSR65013.1"
                     /translation="MAPRFRIGCAGWAIPSRHRPLCGGEGSHLARYAARFDTVEINSS
                     FYRPHAAATYARWATQVPAGFRFSVKLPKAVTHDARLRGCGPALSRFMEEASGLGRKL
                     GVLLVQLPPSLAFEPRVADTFFAMLRRRSAVAIACEPRHASWFAPRVDALWRRYAVAR
                     VAADPARIPEAAQPGGWGRGSYFRWHGSPRMYYDAYDDARLQALAQSMRAASGARRSA
                     WCIFDNTAAGHALADAARLQAMLDPHAG"
     gene            complement(2192..2341)
                     /locus_tag="VLM17_05340"
     CDS             complement(2192..2341)
                     /locus_tag="VLM17_05340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65014.1"
                     /translation="MIRKLASGEYRIYSRKVDPKTGKRRNLGTFPTRDKAEKHEREIQ
                     YFKHH"
     gene            complement(2450..3043)
                     /gene="thpR"
                     /locus_tag="VLM17_05345"
     CDS             complement(2450..3043)
                     /gene="thpR"
                     /locus_tag="VLM17_05345"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HSR65015.1"
                     /translation="MRRSDQASLPGLAPAEVPRGPPHRLFFALWPDPPLREAVAATVG
                     ALVQAHPNDGRRLRADRYHMTLQFLGDIAAPRRDEVVARATAAAAEVESPAFDLLLDH
                     AGSFPNARVWWLAPTDPPAGLRQLWDALGVALLQADQKPKASPGFSPHLTVVRDVGAR
                     LPETPVEPLRWRVDRFVLIDSQPPRPYRIVGQWPLSS"
     gene            complement(3131..>3378)
                     /locus_tag="VLM17_05350"
     CDS             complement(3131..>3378)
                     /locus_tag="VLM17_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467889.1"
                     /note="Uup; in Escherichia coli this cytoplasmic protein
                     was shown to contain ATPase activity; mutations in this
                     gene affect RecA-independent excision of transposons and
                     affects Mu bacteriophage growth; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR65016.1"
                     /translation="GSGIAAAGARRKLGYKEARELDQLPARIEALEARLAELTALSSD
                     PAFYRRDPAAVTAHNAQLVQAQGELDAAYARWTELEG"
BASE COUNT          529 a         1200 c         1264 g          385 t
ORIGIN      
        1 ataacgaatc cggcgcgacc tgggtgtccc gcatcatcct tccagcggtc agcaggcgca
       61 tccagccgac gtcgcgcgcg ctgcggatcg attccccgcg caggtgcagg cgccaggtcg
      121 agaacgaata gccgaacacc tgccggacca gcgtgctggt gaccagcacc gccgccatca
      181 ccgcgctgga gagcacgaaa tcgtgggtgg cctccagcac cagcatcgcc atcgtcatcg
      241 gcgaaccgat gatgcccgcg gcgagcgcgg ccatgccgac gagcgaggcg ttcgccgcgt
      301 cgaccagcgg gaacccgacc acgaggtcga cgcatcgcgc gaacagtgcc ccgagcaggg
      361 tgccgaggaa cagggacgcg aagaacaggc cgccgcggaa gccgaagccg agcgacagca
      421 ccgacgcggc gcacttgagc aggaagaccg tggcgaggaa ggacagcgcg acgccggcgg
      481 cgaggtcgac gtgcagggcg ccatggccgg ccgacaggac ctgcggcgag agcgccgcca
      541 gcggcaccag cagcagcccg ccgatcgccg ggcgcagcca cgccggcagg cgcgtgccat
      601 tgaccgtgcg ttcgacccgt gcgaccaggc gcatgatcgc gatgccgacc agcgcgcagg
      661 tcattcccag cgcgatgtag atcgcatagt cggagctgtg cagcggcgcg accggcggcg
      721 ccgagagcag gtacggcgtc agccccatcg actgcgcgac gaacgtcccg gccagcgcgg
      781 ccgcggccac cggcgccagc gcggacggcg aataggcgcc gatcacgatc tcgaaggcgt
      841 agaacgcgcc ggtgagcggc gcgccgaacg ccgccgcgat cgcggccccc gcgccggcgc
      901 cgaccagcgt gcgcatgtcg gcgcggcgca gccgcaggat gcggcccagg tgcgatccgg
      961 cgcccgcgcc catctgcgca taggccgcct ccagcccgac ggacgcgccg aagccgttcg
     1021 acaacagggt ctgcccggcg acgatgaggc tgtcgcgcat cgacatgcgg ccgccgtgca
     1081 gtgcgttggc ctcgacggcg tcgacgagcg cacgccggcg cgcgcgcacg accagcgtga
     1141 acacgcccag cagcaggccg cccagcggca gcaccagcag ctgcgcgggc gtgagcgaca
     1201 ggctcgcgct gagccgggcc tgcggcggca gcccgaagaa atgcgcctgc aacacgtggg
     1261 cgagccgccc ctgcaatacc gtcatcgcgc cggcgagcgc gccgaccatc gccgcgaggc
     1321 cgatgaacca gccatcgctg gcgcggaagc gccgccgcag ccagtcggcg gccggatgca
     1381 ggacgggctc ggtctgcatg gaggatgtgc tagggggagg cgccaagata acccgcgatg
     1441 cagccggtgc gtcagcccgc gtgcgggtcg agcatcgcct gcagccgcgc cgcgtcggcg
     1501 agcgcatggc cggcggcggt gttgtcgaag atgcaccagg cgctgcgccg cgcgccgctg
     1561 gccgcgcgca tcgactgcgc cagcgcctgc aggcgggcat cgtcgtaggc gtcgtagtac
     1621 atgcgcgggg aaccgtgcca gcggaagtag gacccgcgcc cccacccgcc cggctgcgcc
     1681 gcctcgggga tgcgtgccgg gtcggcggcg acccgggcga ccgcgtagcg ccgccacagc
     1741 gcatcgaccc ggggcgcgaa ccagctcgca tgccgcggct cgcaggcgat ggccaccgcg
     1801 gaacggcggc gcagcatcgc gaagaaggtg tcggccacgc gcggttcgaa cgcgaggctg
     1861 ggcggcagct gcaccagcag gacgccgagc ttgcggccga gtccgctggc ctcctccatg
     1921 aaccggctca gcgcggggcc gcaaccacgc aggcgcgcgt catgggtgac cgccttcggc
     1981 agcttgaccg agaagcggaa gccggcgggc acctgggtcg cccagcgcgc gtacgtcgcg
     2041 gccgcgtggg ggcggtagaa cgaggaattg atctcgaccg tgtcgaagcg cgcggcatag
     2101 cgcgccaggt ggctgccctc ccctccgcac aacgggcggt gccgcgaagg gatcgcccag
     2161 ccggcgcagc cgatgcggaa gcgcggcgcc atcaatggtg cttgaagtac tggatttcgc
     2221 gctcgtgctt ttcggccttg tcgcgggtcg ggaaggtgcc gaggttgcgg cgcttgccgg
     2281 tcttcggatc gaccttgcgc gaatagatgc ggtattcgcc ggaagccagc ttgcggatca
     2341 tggcggtcct cctgcaggtg cggtcgcaat ggaccacgcc ggcgatgaag gcaacgcatt
     2401 ctccgcgaca ggcgctggcg gcgtcggcgc ggccggaagg gaccgtcgtt caggacgaca
     2461 gcggccactg gccgacgatc cggtacggcc tcggcggctg gctgtcgatc agcacgaagc
     2521 ggtcgacgcg ccagcgcaac ggctcgaccg gcgtttccgg caggcgtgcg ccgacgtcgc
     2581 gcacgacggt caggtgcggg gagaaccccg gcgacgcctt cggcttctgg tccgcctgca
     2641 gcaacgccac gccgagcgca tcccacagct ggcgcagccc ggccggcgga tcggtcggcg
     2701 ccagccacca cacgcgcgca ttgggaaagc ttcccgcatg gtcgagcagc aggtcgaacg
     2761 ccgggctttc gacctccgcc gctgcggcgg tggcgcgcgc gacgacctcg tcgcgccgcg
     2821 gtgcggcgat gtcgccgagg aactgcagcg tcatgtggta gcggtcggcc cgcaaccggc
     2881 ggccgtcgtt cgggtgggcc tgcaccagcg cgccgaccgt cgcggccacc gcctcgcgca
     2941 gcggcggatc cggccacagg gcgaagaaca accggtgcgg cggcccgcgc ggcacctcgg
     3001 cgggggcgag gccgggaagc gaagcctggt cactgcggcg catggcgggc ctccatcgag
     3061 cggaagatag cccaggcccg gtggggccga atgaaagagc gggcctcccg ccgcggcccg
     3121 agcggcggcg ctagccttcg agctcggtcc atcgcgcata cgcggcgtcg agctcgccct
     3181 gtgcctgcac cagctgcgcg ttgtgcgcgg tgacggccgc cggatcgcgg cggtagaagg
     3241 ccgggtcgct gctgagcgcg gtgagttctg ccagccgcgc ctccagggct tcgatgcgcg
     3301 caggcagctg gtccagttcg cgcgcttcct tgtagccgag cttgcgccgg gcgccggccg
     3361 cggcgatgcc ggaaccgg
//
LOCUS       DATIQC010000255         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_582240, whole genome shotgun sequence.
ACCESSION   DATIQC010000255 DATIQC010000000
VERSION     DATIQC010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582240"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..912)
                     /locus_tag="VLM17_05355"
     CDS             complement(<1..912)
                     /locus_tag="VLM17_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003469654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HSR65017.1"
                     /translation="MAKTAAKPRTAHVCNECGGEYAKWQGQCDTCGAWNSLSQVALEP
                     EARPAARRDGWAGKVEAPRVTALKDVRHSEEARASTGIGEFDRVLGGGLVEGAVVLVG
                     GDPGIGKSTLLLQALAQMAGTLPGLYVSGEESLAQLAGRAVRLGLPLDGLHALAETGV
                     ERILEHAAAMRPKLIVADSVQTLWSEQLTAAPGSVSQVRESAARLVRYAKETGTAVFL
                     VGHVTKEGGIAGPRVLEHMVDAVLYFEGESGSRFRVLRAFKNRFGAVNELGVFAMGEK
                     GLKEVPNPSAIFLSGGSAAQPGSAVMVT"
     gene            complement(1029..>1511)
                     /locus_tag="VLM17_05360"
     CDS             complement(1029..>1511)
                     /locus_tag="VLM17_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HSR65018.1"
                     /translation="GRSYRVDLDALNRNGAVAPEIYLKPGDRLFLPFNDRKEVYVVGE
                     VITPKAINFKTTDISLTQALGRAGGLDPTTSKGSAVYVIRGTDGGNMKQSPATVYHLN
                     AKSPVSFALADRFMLRPGDVVFVGPAGVTRWNRFLSQVLPLTGLLRNATSAGQDVKNL
                     "
BASE COUNT          210 a          543 c          530 g          228 t
ORIGIN      
        1 cgtcaccatc accgcgctgc ccggctgcgc cgcactgccg ccggagagga agatcgccga
       61 ggggttgggc acttccttca ggcccttctc gcccatcgcg aacacgccca gttcgttcac
      121 cgcgccgaag cggttcttga acgcccgcag cacgcggaag cggctgccgc tttcgccttc
      181 gaaatacagc accgcatcga ccatgtgctc gagcacgcgc gggccggcga tgccgccttc
      241 cttggtgacg tggccgacga ggaacaccgc ggtgccggtt tccttcgcgt agcgcaccag
      301 gcgcgcggcg ctctcgcgga cctggctgac cgagcccggc gcggcggtga gctgctcgct
      361 ccacagggtc tgcaccgagt cggcgacgat cagcttcggg cgcatcgcgg cggcgtgctc
      421 gaggatgcgc tcgacgccgg tttcggccag cgcgtgcagg ccatccagcg gcagcccgag
      481 ccgcaccgca cgcccggcga gctgcgccag cgattcctcg cccgaaacgt acaggccggg
      541 cagcgtgccg gccatctgcg cgagcgcctg caacagcagc gtcgacttgc cgatgccggg
      601 atcgccgccg accagcacca ccgcgccttc gaccaggccg ccgccgagca cgcggtcgaa
      661 ctcgccgatg ccggtggacg cgcgcgcctc ctcgctgtgg cggacgtcct tcagcgcggt
      721 gacccggggc gcctcgacct tgccggccca gccgtcgcgg cgcgcggccg gccgcgcctc
      781 cggctccagc gcgacctgcg agagcgaatt ccacgcgccg caggtgtcgc actggccctg
      841 ccacttggcg tattcgcccc cgcattcgtt gcagacgtgg gcggtgcggg gtttggcggc
      901 ggtcttggcc atggcggagg gcaagggaaa ctgcggccac tttaccggcg cgcgtcgctc
      961 atcgtgagac cacgaacgca acgggcccgc tcgcgcgggc ccgtgcatcc tgcgaaggaa
     1021 gagccggatc agaggttctt gacgtcctgt ccggcgctgg tggcgttgcg cagcaagccg
     1081 gtcagcggca gcacctggct caggaagcgg ttccagcggg tcacgccggc cgggccgacg
     1141 aagaccacgt cgccgggccg cagcatgaag cggtcggcca gggcgaagga caccggcgac
     1201 ttcgcgttga ggtggtacac cgtggcgggc gactgcttca tgttgccgcc gtcggtgccg
     1261 cggatcacgt acaccgcgct gcccttggag gtcgtcgggt ccagcccgcc cgcacggccg
     1321 agcgcctggg tcaggctgat gtcggtggtc ttgaagttga tcgccttcgg cgtgatcacc
     1381 tcgccgacca cgtagacctc cttgcggtcg ttgaagggca ggaacaggcg gtcgccgggc
     1441 ttgaggtaga tctccggcgc caccgcgccg ttgcggttga gcgcgtcgag gtcgacccgg
     1501 tagctccttc c
//
LOCUS       DATIQC010000256         4333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_511307, whole genome shotgun sequence.
ACCESSION   DATIQC010000256 DATIQC010000000
VERSION     DATIQC010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511307"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1542
                     /locus_tag="VLM17_05365"
     CDS             <1..1542
                     /locus_tag="VLM17_05365"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HSR65019.1"
                     /translation="SPTDSLLSTVGGAALHALPGAIALPPAGAAAVPDAGLAPRVQLT
                     MSPYYGKSDFSGLSAPRARARLDPVSIADLLRNGFVYPPHSIFQDVKLVTFSFDPAHD
                     MHDAPQFRFVFREDARQREAEEVASDWVGEYHRLLCDAVATACRDMRAPWLLQSGGKD
                     STSIAIAAAEARPDMRCITYHGGPEENEVESARAVAATLGLRHETLECDPGRAYDRYL
                     ALVDRMPLLTADFALLSYVDLATQVAVEGGDGIVDGMCSDNYFGFQAGWKHRWLSALA
                     RGLRLPGFLSELPLVGRNFELCYVLSTLQMDRIERAFPGSRFTDAEVDALFGHEVSRL
                     SRARLELFRAEMESANSVDEWWAIASSIAGSSASVGKGLYTTAALSLQAAYPFCDRSL
                     CEWVFRQVPQNELVDPAARVSKLLMRKHIATRFGRLPYVVKKGSFRFDLCGLARGRFE
                     QVHDFALQVRHVLPGAAAWLERNRARFDNKYHSSKFYLLAVVLPWIAARQECEAANVA
                     AGKDA"
     gene            1539..2987
                     /locus_tag="VLM17_05370"
     CDS             1539..2987
                     /locus_tag="VLM17_05370"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HSR65020.1"
                     /translation="MTMDIPASPATTRRHQITMSPYYGMPDFSSLSHAGTGTGRLDLV
                     SVADLLRNGFIYAPHSIFENVKLATFGFNPQQDIDDGSQFRFHFRDSGKKRDGGASDG
                     DLVATYHRLLCEAVARACADMRAPWLLQSGGKDSTSIAIAVAETRPDAVCITYLGGRE
                     ENEIDSASAVARALGLRHETLACDPGRAYDRYLALIPRMPMLTADFAMLSYADLATEV
                     AAHGGDGVIDGIGSDSYFGMPVSRQHRMLFHLAKGIRLPRFVAELPLIDRSFRLCFGL
                     STLQMDPIERIFPGSRFTDAEVDELLGREIAGQSKARLTPFRKEIDSVTSRDELRTMA
                     ITIEESSSAFAKGLYVSSALSLRSAYPFCDSALREWVYRHVPQDQLLDPATATSKVLV
                     RRHIATRFEKLPYVSKKGSFRFDLCGLAKSRFEQVHDFALQERYVLPGAARWLERNRG
                     RLDNKYHASKFYLLAVVLPWIAHHVRGPARMP"
     gene            3008..>4333
                     /locus_tag="VLM17_05375"
     CDS             3008..>4333
                     /locus_tag="VLM17_05375"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HSR65021.1"
                     /translation="MDMVANPLEAGTHRRQITMSPYYGRPDFSSLAHDRAAKARLDDV
                     SLADLLRNGFVYPPNSIFTDTKLATFGFDPRHDMYAAPRFHFDFHTRGKGEATDAQDW
                     MGTYHRLLCDAYRRACAEMRAPWLLQSGGKDSTQLAIIAAEVRPDTTCITYLGGEEEN
                     EVASARYVARELGLRHEVLTCDPGRAYDRYLALLPRMPLLTADFALLSYVDLATDVLA
                     AGGDGVVDGMGADNYFGIPVGRLHRWLSVMARHMQLPSQLFELPVIGRNFEICYLLST
                     LQMDPIERDFPGSRFTDAEVDALFGRGVSAQSRARLAVFREEIASAANADERCNMALT
                     VAGSAGGFAKGLYTTSALSLQAAYPFCDPALRDWVYRQVPSDQLVDPVTRTSKVLMRR
                     HIARRFGALPYVQRKGSFRFDLRGLARTRFEHVRAQAQGARELLPGAVHW"
BASE COUNT          637 a         1545 c         1458 g          693 t
ORIGIN      
        1 tctccgactg attcgctgct ctccaccgtt ggcggcgccg cgctgcacgc ccttcccggc
       61 gcaatcgcgc tgccgcccgc gggcgccgcg gcggtgccgg atgccggcct ggcgccgcgc
      121 gtccagctca ccatgtcgcc gtactacggc aagtccgatt tttcggggct gtccgctccc
      181 cgcgcgcgcg cccgtcttga tccggtatcg atcgcggatc tcctgcgcaa cggcttcgtc
      241 tatccgccgc actccatctt ccaggacgtc aagctggtga cgttcagttt cgatcccgcc
      301 cacgacatgc acgacgcccc gcagttccgc ttcgtcttcc gggaagacgc gcggcagcgg
      361 gaagccgagg aggtcgcctc ggactgggtg ggcgagtacc accgcctgct gtgcgacgcg
      421 gtcgccacgg cctgtcgcga catgcgcgcg ccctggctgc tgcagagcgg cggcaaggat
      481 tccacctcca tcgcgatcgc ggccgcggaa gcgcgccccg acatgcgctg catcacctac
      541 cacggcggcc ccgaggagaa cgaggtggaa tcggcgcgcg cggtcgccgc gacgctcggg
      601 ctgcgccacg agacgctgga gtgcgatccg ggacgcgcct acgaccgcta cctcgcgctc
      661 gtcgaccgga tgccgctgct gacggccgat ttcgccctgc tgtcgtacgt ggacctggcg
      721 acccaggtcg ccgtcgaagg cggcgacggc atcgtcgacg gcatgtgctc ggacaactac
      781 ttcggtttcc aggccggatg gaagcatcgc tggctgtcgg cgctcgcccg cggcctgcgg
      841 ctgccgggct tcctctcgga actgccgctg gtcgggcgca atttcgaact gtgctacgtg
      901 ctctcgaccc tgcagatgga tcgcatcgag cgcgcgttcc cgggttcgcg cttcaccgac
      961 gccgaggtcg acgcactgtt cggccacgaa gtctcgcggc tgtcgagggc gcgccttgaa
     1021 ctgttccgcg ccgaaatgga atccgccaac agcgtggacg aatggtgggc catcgcctcc
     1081 tcgatcgccg gctccagcgc gtcggtcggg aaggggctgt acacgaccgc cgcgctgtcg
     1141 ctgcaggcgg cctatccctt ctgcgaccgc agcctgtgcg agtgggtatt ccgccaggtg
     1201 ccgcagaacg aactcgtgga tccggcggcc agggtgagca agctcctcat gcgcaagcac
     1261 atcgcgaccc gcttcggccg gttgccctac gtggtgaaga agggcagctt ccgcttcgac
     1321 ctgtgcgggc tggcgcgcgg gcgcttcgag caggtgcacg atttcgcgct gcaggtgcgc
     1381 cacgtcctgc ccggggcggc ggcatggctc gagcgcaacc gcgcccggtt cgacaacaaa
     1441 taccactcct ccaagttcta tctcctggcg gtcgtgttgc cgtggatcgc ggcgcgacag
     1501 gaatgcgaag cggcgaacgt ggccgccggg aaggacgcat gacgatggat atccccgcga
     1561 gcccggcgac gacgcggcga caccagatca cgatgtcgcc ctactacggc atgccggatt
     1621 tctccagcct gtcgcacgcc ggcacgggaa ccggccggct cgacctcgtc tcggtcgcag
     1681 acctgctgcg caacggcttc atctacgcgc cgcactcgat cttcgagaac gtgaaactgg
     1741 cgacgttcgg cttcaatccg cagcaggaca tcgacgacgg atcgcagttc cgcttccatt
     1801 tccgcgacag cggcaagaag cgcgacgggg gcgcgtccga cggggacctg gtggcgacct
     1861 accaccgcct gctgtgcgag gccgtggccc gcgcctgcgc cgacatgcgc gcgccgtggc
     1921 tgctgcagag cggcggcaag gactcgacgt ccatcgcgat cgccgtcgcc gagacccgcc
     1981 cggacgcggt ctgcatcacg taccttggtg gccgcgagga gaacgaaatc gattccgcga
     2041 gcgcggtcgc gcgcgccctc gggctgcggc acgaaaccct cgcctgcgac ccgggacggg
     2101 cctacgaccg ctacctcgcg ctgatcccgc gcatgccgat gctgaccgcc gacttcgcga
     2161 tgctgtccta tgcggacctg gcgaccgagg tggccgcgca cggcggcgac ggcgtcatcg
     2221 acggcatcgg ctccgacagc tacttcggga tgccggtgag ccgccagcac cggatgctgt
     2281 tccacctcgc caagggcatc cgcctgcccc ggttcgtcgc cgagctgccg ctcatcgacc
     2341 gcagcttccg gctgtgcttc ggcctgtcga ccctgcagat ggatccgatc gagcgcatct
     2401 tccccggctc gcgtttcacc gacgcggagg tcgacgagct gctcgggcgc gagatcgccg
     2461 gccagtcgaa ggcgcgcctg acgccgttcc gcaaggagat cgactcggtg accagccgcg
     2521 acgagctgcg cacgatggcg atcaccatcg aggaatcctc gagtgcgttc gcgaaggggc
     2581 tgtacgtgag cagcgcgctg tcgctgcgct cggcctatcc cttctgcgac agcgcgttgc
     2641 gcgaatgggt gtaccggcac gtcccgcagg accagttgct cgatcccgcg accgcgacca
     2701 gcaaggtgct ggtgcgccgc catatcgcga cccgtttcga gaagctcccc tacgtatcga
     2761 agaagggcag cttccggttc gacctgtgcg gccttgcgaa aagccgcttc gagcaggtcc
     2821 acgacttcgc actgcaggag cggtacgtgc tgccgggggc ggcgcgctgg ctggagcgca
     2881 accggggccg gctggacaac aagtaccacg cgtccaagtt ctacctgctg gcggtggtcc
     2941 tgccctggat cgcccaccat gtccgcggtc cggcgcggat gccgtaacac gttcaaggag
     3001 gggaacgatg gacatggtgg ccaatccgct cgaagccggc acgcaccgcc gccagatcac
     3061 gatgtcgccg tactacggcc ggccggattt ttccagcctg gcccacgacc gcgcggcgaa
     3121 ggcccggctg gacgacgtgt cgctggccga cctgctgcgc aacggcttcg tgtacccgcc
     3181 gaactcgatc ttcaccgaca ccaagctcgc cacgttcggt ttcgatccgc ggcacgacat
     3241 gtacgcggcc ccgcgcttcc acttcgactt ccacacgcgc ggaaagggcg aggcgaccga
     3301 cgcgcaggac tggatgggca cctaccaccg gctgctgtgc gacgcctacc gccgtgcctg
     3361 cgccgagatg cgcgcgccgt ggctgctgca gagcggcggc aaggactcca cgcagctggc
     3421 gatcatcgcc gccgaggtac ggccggacac cacctgcatc acctacctgg gcggcgagga
     3481 ggagaacgag gtcgcctccg cgcgctacgt ggcgcgcgaa ctgggcctgc gccacgaggt
     3541 gctgacctgc gaccccggcc gtgcctacga ccgctacctc gcgttgctgc cgcggatgcc
     3601 gctgctgacg gccgatttcg cgctgctgtc ctacgtcgac ctcgccaccg acgtgctcgc
     3661 ggccggcggc gacggcgtgg tcgacggcat gggcgcggac aactacttcg gcatcccggt
     3721 gggacgcctg caccgctggc tgtcggtgat ggcccgccac atgcagctgc cgagccagct
     3781 gttcgagctg ccggtgatcg gccgcaactt cgagatctgc tacctgctgt cgaccctgca
     3841 gatggacccg atcgaacgcg acttccccgg ttcgcgcttc accgacgcgg aggtcgacgc
     3901 gctgttcggc cgcggcgtct cggcgcagtc gcgcgcccgc ctggcggtgt tccgcgagga
     3961 gatcgcgtcg gcggcgaacg cggacgagcg ctgcaacatg gcgctgacgg tcgccggttc
     4021 ggcgggcggg ttcgccaagg ggctgtacac caccagcgcg ctgtcgctgc aggcggcata
     4081 tcccttctgc gatccggcgt tgcgcgactg ggtgtaccgg caggtgccgt ccgaccagct
     4141 ggtcgacccg gtcacccgca ccagcaaggt gctgatgcgc aggcacatcg cgcgccggtt
     4201 cggcgcgctg ccctacgtgc agcgcaaggg cagtttccgc ttcgacctgc gcggcctcgc
     4261 gcgcacccgc ttcgagcacg tgcgtgcgca ggcgcagggc gcgcgggagc tgctgccggg
     4321 cgcggtgcac tgg
//
LOCUS       DATIQC010000257         2657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_299914, whole genome shotgun sequence.
ACCESSION   DATIQC010000257 DATIQC010000000
VERSION     DATIQC010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299914"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1170
                     /locus_tag="VLM17_05380"
     CDS             214..1170
                     /locus_tag="VLM17_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HSR65022.1"
                     /translation="MKPILSHAALALALLPSLVAARQVPTAELANDPLKSHGDPAAAL
                     LRAQVLLDRAHFSPGEIDGAGGGNTRGALAGFQAAHGLEATGRLDDRTWQALEQDPQP
                     VLVTYTLSEADVAGPFVAIPDDIGQQAMLAHLGYGSPQEALGEKFHASPRLLQGLNPD
                     ARFVAGESLVVPDVLGETAPQAAARVVVDKSDSVVRLLDAQGAVQAQFPASMGSAHDP
                     LPLGEWTIRGVSRDPDFHYDPVLFWDADPLKAKATVQPGPNNPVGVVWIDLSKEHYGL
                     HGTPEPAKVGKTQSHGCIRLTNWDALAVAGAVRAGTPVTLQE"
     gene            1195..1893
                     /locus_tag="VLM17_05385"
     CDS             1195..1893
                     /locus_tag="VLM17_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HSR65023.1"
                     /translation="MTGLLLFLAGVLVGANAVYFLLVSPSLRDVRTPAAQPPVASEAR
                     GRTAATAIPPVQPTPRATTRPAAPGPIADTAPAAPGATPLPAPANLRIPVAGVAAAQL
                     ADTFNDRRDGGRAHEALDIMAPRGTPVLAAADGSIAKLFTSQRGGLTVYEFDPTGTWA
                     YYYAHLDRYAPGLAEGRQVRRDEVIGYVGSTGDADASAPHLHFAIFVLGPEKHWWQGT
                     AIDPYPLLGGTATR"
     gene            complement(1897..>2657)
                     /locus_tag="VLM17_05390"
     CDS             complement(1897..>2657)
                     /locus_tag="VLM17_05390"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65024.1"
                     /translation="NLLDNAAKYTPSGGRIELDAGIAGDVVRVCVRDTGVGIDPGLLP
                     RLFDLFAQGERPPDRSQGGLGIGLALVRKLVELHGGTVRGDSAGAGSGSTFVVELPRA
                     EAPAAAGPASPPATATGSAPQARQRIVLVDDNQDALQTIAFLLRAHGHAVATHGDAEA
                     ALEAMERGRDPPADLYLLDIGLPGMDGHALARRLRADPRTARATLVALSGYGQAADID
                     ASFAAGFDAHLVKPVDAERLLGLLRDLDAVRTAD"
BASE COUNT          360 a         1019 c          938 g          340 t
ORIGIN      
        1 acgacgacga cagcccggcg cacgaccgcc gtgcgttcca ctgagggcgc tcacgtgcgt
       61 tcacccgggt aggctgagga gctgcgcgat cggcgtcgag gcgagcctcg aacatcgcgg
      121 cccgcgcgga acttgagcgc cagcccagct agctgaacgc tcgccgcgcg ccttcacgtg
      181 gcctgccgcg cgcggtgaag cagcatcggg ggcatgaaac ccatcctgtc gcatgccgcc
      241 ctcgccctcg cactgttgcc gtcgctcgtc gccgcgcggc aagtccccac cgccgagctc
      301 gccaacgatc cgctcaagtc gcacggcgac cccgccgccg cgctgctgcg cgcgcaggtg
      361 ctgctcgacc gtgcgcactt ctcgccgggc gaaatcgacg gcgccggcgg cgggaatacc
      421 cgcggcgcgc tcgccggctt ccaggccgcg catggactgg aggccaccgg caggctcgac
      481 gaccgcacct ggcaggcgct ggaacaggat ccgcagccgg tgctggtgac ctacacgctc
      541 agcgaggccg acgtcgccgg tcccttcgtc gcgatacccg acgacatcgg gcagcaggcc
      601 atgctggccc acctcggtta cggttcgccg caggaagccc tcggcgagaa gttccatgcc
      661 agtccccggc tgctgcaggg gctcaatccc gatgcgcgct tcgtcgccgg cgagtcgctg
      721 gtggtgcccg acgtgctcgg cgagaccgcg ccgcaagccg ccgcgcgcgt cgtggtggac
      781 aagtccgatt cggtggtgcg cctgctcgac gcgcagggcg cggtgcaggc gcagttcccg
      841 gccagcatgg gcagcgcgca cgacccgctc ccgctgggcg aatggacgat ccgcggcgtg
      901 agccgggatc cggacttcca ttacgacccg gtgctcttct gggatgccga tccgctcaag
      961 gcgaaggcga ccgtgcagcc gggcccgaac aacccggtcg gcgtggtctg gatcgacctg
     1021 tcgaaggaac actacgggct gcacggcacg ccggaaccgg cgaaggtggg caagacgcag
     1081 tcgcacgggt gcatccgcct gaccaactgg gatgcgcttg cggttgccgg cgcggtcagg
     1141 gccggcacgc cggtgaccct gcaggagtga gcgatggccg gcgcgcgccc tgccctgacc
     1201 ggattgctgc tgttcctggc cggcgtgctg gtcggggcga acgcggtgta tttcctgctg
     1261 gtgtcgccct cgctgcgcga cgtgcggaca ccggccgcgc aaccgccggt cgccagcgaa
     1321 gcacgcggcc ggaccgccgc gaccgccatc ccgccggtgc agcccacgcc ccgggcaacg
     1381 acgcgccccg cggcgcccgg cccgatcgcc gacaccgcgc cggcggcacc gggcgccacg
     1441 ccgctgcccg ctcccgcgaa cctgcgcatc ccggtcgccg gggtcgctgc cgcgcagctc
     1501 gccgacacct tcaacgatcg ccgcgacggc ggacgcgcgc acgaggcgct cgacatcatg
     1561 gccccgcgcg gcacgccggt gctcgccgcg gccgacggct cgatcgccaa gctgttcacc
     1621 agccagcgcg gcgggctcac cgtgtacgag ttcgatccga ccgggacctg ggcgtactac
     1681 tacgcccacc tcgaccgcta cgcgcccggc ctggccgaag gccggcaggt ccgccgggac
     1741 gaagtgatcg gctacgtcgg cagcaccggt gacgccgatg cgagcgcgcc gcacctgcac
     1801 ttcgcgatct tcgtcctcgg cccggagaag cactggtggc agggcacggc gatcgacccc
     1861 tatccgttgc tcggcggcac cgccacgcgc tgagcgtcag tccgcggtgc gcaccgcatc
     1921 caggtcgcgc agcagcccga gcaggcgctc ggcgtcgacc ggcttcacca ggtgcgcgtc
     1981 gaaacccgcc gcgaaggatg cgtcgatgtc ggccgcctgc ccgtagcccg acagcgccac
     2041 cagcgtcgcc cgcgcggtgc gcggatcggc gcgcaggcgg cgcgcgagcg catggccgtc
     2101 catgcccggc aggccgatgt cgagcaggta caggtccgcc ggcggatccc ggccacgctc
     2161 catcgcctcc agtgccgctt ccgcatcgcc gtgggtcgcg accgcgtggc catgggcgcg
     2221 cagcaggaag gcgatggtct gcagcgcatc ctggttgtcg tcgacgagca cgatgcgctg
     2281 ccgcgcctgc ggcgcggatc ccgttgccgt tgccggcggc gacgccggcc cggccgcggc
     2341 cggtgcctcc gcgcgcggca gctcgaccac gaaggtgctg cccgaccccg cccccgcact
     2401 gtcgccgcgc accgtgccgc cgtgcagctc gaccagcttg cgcaccagcg ccaggccgat
     2461 gccgaggccg ccctgcgaac ggtcgggcgg ccgctcgccc tgcgcgaaca ggtcgaacag
     2521 gcgcggcagc aggccggggt cgatgccgac gccggtgtcg cgcacgcaca cgcggaccac
     2581 gtcgcccgcg atgcccgcgt ccagttcgat gcggccgccg ctgggcgtgt acttggccgc
     2641 gttgtcgagc aggttcg
//
LOCUS       DATIQC010000258         4143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_476815, whole genome shotgun sequence.
ACCESSION   DATIQC010000258 DATIQC010000000
VERSION     DATIQC010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476815"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VLM17_05395"
     CDS             complement(<1..270)
                     /locus_tag="VLM17_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017171998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HSR65025.1"
                     /translation="MDFESLPLGRQVDYPRRYDASLLFPIPRAPGRHDLGVDPAALPF
                     TGLDRWYGYELSWLDGGGKPVVATLTLEVPATTPHLVESKSLKLYL"
     gene            373..1038
                     /locus_tag="VLM17_05400"
     CDS             373..1038
                     /locus_tag="VLM17_05400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007804174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSR65026.1"
                     /translation="MILYDYLPSQNAWKVRQLLRHLQRPVQTRFVSIFEGEGQDPAYR
                     RISPTGTVPALQLDDGRVLAESNAILAYLAEGTPYLPDDAFGRAKVWQWLSFEQERIE
                     SQIGAIRHWTMTGKLARRAQVLVDAKRSGGLQALRILDAELSQRDFIAGDGYSIADIA
                     VFAYTSRAGEGGFDLASFPNVGAWIARVRSQPGHLAETFPYAIDPHSANELGAPAPRE
                     AVA"
     gene            1035..1688
                     /locus_tag="VLM17_05405"
     CDS             1035..1688
                     /locus_tag="VLM17_05405"
                     /inference="COORDINATES: protein motif:HMM:NF016207.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HSR65027.1"
                     /translation="MKPARAGEQPCTAEVDRLVADHPFALLVSATAQAPVATPLPLLL
                     ERDTDGSAWLVGHFARNNPQLAMLRRQPRALAVFTGAHGYMSPSWLRDRTQAPTWYYA
                     TVHFDVEVELLEQETATHDALERLVAHMEAGRADAWHAAELGARYPRLAAAVVAFRAR
                     IVATHARFKLGQGERDDVLADQCAALASDGQYALLAAMDRAVAAPVSPAATRAGSPA"
     gene            complement(1651..2988)
                     /locus_tag="VLM17_05410"
     CDS             complement(1651..2988)
                     /locus_tag="VLM17_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019336711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HSR65028.1"
                     /translation="MRLLATTPVFLLAAGLLAQPAARAAEAPVAAQRPEVAAAAQRED
                     DAVRAWRREIHLHPELSNREERTSRLVAEHLKALGLQPRTGIAHHGVVAIIQGRLPGP
                     KLALRADMDALPVTEQTGLPFASKATTLFNGQQTGVMHACGHDAHTAILLGVADALVA
                     MRDTLPGSVMLVFQPSEEGAPQGEEGGASLMLKEGLFRDFKPDAMFGLHVFSTLPAGT
                     IGVRSGPEMAASDKFTITVHGRQTHGSAPWAGVDPIVAAADIIGTAQTIVSRRTNIAA
                     LPAVVTFGSIHGGIRYNIIPDEVTLVGTIRTFDAKQREAIFGQLKEVATDVAAAHGAS
                     ADAQVPDRAGNPVTYNDPALTARMRPSLEAVAGKDRVVEPPLQMGAEDYSFYAKEVPS
                     MFFFVGATAPGIDPATAPSNHSPKFLLDESALDLGLRAMLQVTLDYLHGSPQG"
     gene            3081..>4143
                     /locus_tag="VLM17_05415"
     CDS             3081..>4143
                     /locus_tag="VLM17_05415"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HSR65029.1"
                     /translation="MNDAGPNMPSAALRGDAALLRAVGSLVLTAAVINVIVGAGVFQM
                     PGVLAARMGASAPLALVAGALAIIPIALCFAAVGSRVVATGGPYSYVSATFGPFMGFL
                     AGALMWISNFTSSAGVAAALSGQLANLVPALASPVARSLFLTALYLALFALNAFGVKL
                     GARAIAVLAGLKLTPLFLLAAVGLFFVDWSQVSFAVSAIPSWSALGAGMVLVMFAYSG
                     METALVPSGELRDPARSVPRAALAAITLVVLLYVGVQVVTQGVLGAHAAASKVPLADA
                     AGALWTPGRTLLLATACVSMTGFLMGNLLGTSRLVFALARDGFLPAAFAGVSARHRVP
                     LLALVIHAALAWVLALGGSF"
BASE COUNT          516 a         1457 c         1537 g          633 t
ORIGIN      
        1 gaggtagagc ttgagcgact tcgattcgac caggtgcggc gtggtcgccg gcacctcgag
       61 cgtgagcgtc gccaccaccg gcttgccacc cccatcgagc caactcagtt cgtagccgta
      121 ccagcggtcg aggccggtga acggcagcgc cgccgggtcg acgccgaggt cgtggcggcc
      181 gggcgcgcgc gggatgggaa acagcagcga cgcgtcgtac cggcgcgggt agtcgacctg
      241 ccggccgagc gggagcgact cgaagtccat gcgaccgatt ttacgtgagc ggccccgcgc
      301 gagcgcatga atcggatatc gcgccgttgc cgccggcccg acactgcgcg cctccaacga
      361 cgaggccgcg ccatgatcct gtacgactac ctgccttcgc agaacgcctg gaaggtgcgc
      421 cagctgttgc ggcacctgca gcggccggtg cagacgcggt tcgtcagcat cttcgagggc
      481 gagggccagg accccgccta ccgccgcatc agcccgaccg gcaccgtgcc cgcgctgcag
      541 ctcgacgacg gtcgcgtgct ggccgagtcc aacgccatcc tcgcctacct cgccgagggc
      601 acgccctacc tgccggacga tgcattcggc cgcgccaagg tctggcagtg gctgtccttc
      661 gagcaggaac gcatcgagtc gcagatcggg gcgatccgcc actggacgat gaccggcaag
      721 ctggcgcgcc gtgcgcaggt gctggtcgac gccaagcgca gcggcggcct gcaggcgctg
      781 cgcatcctcg acgcggagct gtcgcagcgc gacttcatcg ccggcgatgg ttattcgatc
      841 gccgacatcg ccgtgttcgc ctacaccagt cgtgccgggg aaggcggctt cgacctcgcg
      901 tcgttcccga acgtcggtgc gtggatcgcg cgcgtgcggt cgcagccggg ccatctggcc
      961 gagacgttcc cgtacgcgat cgatccgcac tcggccaacg agctgggcgc gccggcgccg
     1021 cgcgaagcgg tcgcatgaag ccggcgcgcg cgggcgagca gccgtgcacc gcggaggtcg
     1081 accgcctcgt cgccgaccac ccgttcgcgc tgctggtctc ggcgacggcg caggcgccgg
     1141 tggcaacgcc gctgccgctg ctgctcgaac gcgatacgga cggcagcgcg tggctggttg
     1201 gtcatttcgc caggaacaat ccgcagttgg ccatgctgcg gcgacagccg cgggcactgg
     1261 cggtgttcac cggcgcgcac ggttacatgt cgccgtcgtg gctgcgcgac cgcacccagg
     1321 cgccgacctg gtattacgcg accgtgcact tcgacgtcga ggtcgagctg ctggaacagg
     1381 agacggcgac gcacgacgcg ctcgagcggc tggtcgcgca catggaagcg ggacgcgccg
     1441 atgcatggca tgcggccgag ctgggcgcgc ggtatccgcg gctcgccgcc gcggtggtcg
     1501 cgttccgcgc gcgcatcgtc gccacgcacg cccgcttcaa gctcggccag ggcgagcgcg
     1561 acgacgtgct cgccgaccag tgcgccgcgc tcgcaagcga cgggcagtac gcgctgctcg
     1621 ccgcgatgga ccgcgcggtc gcggcgccgg tcagccctgc ggcgacccgt gcaggtagtc
     1681 cagcgtgacc tgcagcatcg cgcgcaggcc gaggtcgagc gcggattcgt cgagcaggaa
     1741 tttcggcgaa tggttgctcg gcgccgtcgc agggtcgatg ccgggcgccg tcgcgccgac
     1801 gaagaagaac atcgacggca cttccttcgc gtagaaggag taatcctccg cgcccatctg
     1861 cagcggcggc tcgaccacgc ggtccttgcc ggcgaccgcc tccaggctgg ggcgcatgcg
     1921 cgcggtgagc gcggggtcgt tgtaggtcac cgggttgccc gcgcgatccg gcacctgcgc
     1981 gtccgcgctc gcgccgtgcg cggcggcgac gtcggtggcg acctccttca gctggccgaa
     2041 gatcgcctcg cgctgcttcg cgtcgaaggt gcggatggtg ccgaccaggg tgacctcgtc
     2101 ggggatgatg ttgtagcgga tgccgccgtg gatcgagccg aacgtgacca ccgccggcag
     2161 cgcggcgatg ttggtgcggc gggacacgat cgtctgcgcg gtgccgatga tgtcggccgc
     2221 ggcgacgatc gggtcgacgc ccgcccatgg cgccgagccg tgcgtctgcc ggccgtgcac
     2281 ggtgatcgtg aacttgtcgg acgcggccat ctccggtccg ctgcgcacgc cgatcgtgcc
     2341 cgcgggcagg gtcgagaaca catgcaaacc gaacatcgcg tcgggcttga agtcgcggaa
     2401 caggccctcc ttcagcatca gcgaggcgcc gccttcctcg ccctgcgggg cgccttcctc
     2461 ggacggctgg aacaccagca tcacgctgcc cggcagcgtg tcgcgcatgg cgaccagcgc
     2521 gtcggcgacg ccgagcagga tcgcggtgtg ggcgtcgtgt ccgcaggcat gcatgacgcc
     2581 ggtctgctgg ccgttgaaca gcgtggtcgc cttggaggcg aacggcaggc cggtctgctc
     2641 ggtcaccggc agcgcgtcca tgtcggcgcg cagcgcgagc ttcgggcccg gcagcctgcc
     2701 ctggatgatc gcgaccacgc cgtggtgggc gatgccggtg cgcggctgca ggccgagcgc
     2761 cttcaggtgc tcggcgacca ggcgggaggt gcgctcctcg cggttggaga gctccgggtg
     2821 gaggtggatc tcgcgacgcc aggcccgcac cgcgtcgtcc tcgcgctgcg cggcggcggc
     2881 gacttcgggg cgctgcgccg cgacgggcgc ctcggccgcg cgcgcggcgg gctgggcgag
     2941 caggccggcg gccagcagga aaacgggcgt cgtggcaagc aggcgcatgg catgtcctca
     3001 tggagtcggc gcatggtacc cggcgctcgc cttccgcccg cgtgcgtgcg acgcttgggc
     3061 ctccaatcgg gggataccgc atgaacgacg ccgggccgaa catgccgtcc gccgcgctgc
     3121 gcggcgatgc cgccctgctg cgcgcggtcg gttcgctggt gctcaccgcc gcggtgatca
     3181 acgtgatcgt cggcgccggc gtgttccaga tgcccggcgt gctcgccgcg cggatgggcg
     3241 cctcggcgcc gctggcgctg gtggccggcg cgctggcgat catcccgatc gcactgtgct
     3301 tcgccgcggt cggcagccgc gtggtcgcca ccggcggccc ctacagctac gtgtcggcga
     3361 cgttcggccc gttcatgggc ttcctcgccg gcgcgctgat gtggatcagc aacttcacct
     3421 ccagcgcggg ggtcgccgcc gcgctgtccg gacagctcgc caacctggtg ccggcgctcg
     3481 cctcgccggt ggcgcgctcc ttgttcctca ccgcgctgta cctcgcgctg ttcgcgctga
     3541 acgcgttcgg cgtcaagctc ggcgcgcgcg cgatcgcggt gctggcggga ttgaagctga
     3601 cgccgctgtt cctgctcgcg gcggtcggcc tgttcttcgt cgactggtcg caggtgagct
     3661 tcgcggtgtc ggcgatcccg tcgtggtcgg cgctgggcgc cggcatggtg ctggtgatgt
     3721 tcgcctattc cggcatggag accgcgctcg tgccctcggg cgaactgcgc gacccggcgc
     3781 gcagcgtgcc gcgcgcggcg ctcgccgcga tcacgctggt ggtgctgctg tacgtcggcg
     3841 tgcaggtggt cacccagggc gtgctcggcg cgcacgcggc ggccagcaag gtgccgctcg
     3901 ccgatgccgc cggcgcgctg tggacgccgg gccgcacgct gctgctggcg accgcgtgcg
     3961 tgtcgatgac cggtttccta atgggcaacc tgctcggcac gtcgcggctg gtgttcgcgc
     4021 tcgcgcgcga cggcttcctg cccgccgcgt tcgccggcgt gagcgcgcgc caccgcgtac
     4081 cgctgctggc gctggtgatc cacgcggcgc tggcctgggt gctcgcgctg ggcggcagct
     4141 tcg
//
LOCUS       DATIQC010000259         4723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_405812, whole genome shotgun sequence.
ACCESSION   DATIQC010000259 DATIQC010000000
VERSION     DATIQC010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4723
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405812"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1199)
                     /locus_tag="VLM17_05420"
     CDS             complement(<1..1199)
                     /locus_tag="VLM17_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012437906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HSR65030.1"
                     /translation="MVTSSPPADDGSRDRLDRLGSIAGQLLDRCRQRGATQAEVSCSE
                     EHGLNVNVRMGEVETVESTRDRGIAVTVFFGRRKGSASTADLRESSLDATVDQACAIA
                     RHTEEDPCAGLADAGLMARPEGGSFPDFDMWHPWMLEADRAVDLALACENAGRESDQR
                     IGNSDGASIGTGASLHVYANSHGFVGRERSTQHTIGCALIAGRGEGMQRDGWYTTALA
                     PEDLEAPAAVGRRAAERAAARLQPRSVATGEMPVLFAAEVARSLIGHLLAAVSGGALY
                     RKASFLVDSAGQQLFPGWFSIEELPFLRRGFRSAAFDMEGVATRQSPLVRDGVLQRYV
                     LGSYSARKLGLQTTANAGGVHNLQVAANAGDFDALLRGMGRGLLVTELMGQGINPVTG
                     DYSRGAAG"
     gene            1319..1894
                     /gene="yjgA"
                     /locus_tag="VLM17_05425"
     CDS             1319..1894
                     /gene="yjgA"
                     /locus_tag="VLM17_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017914544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis factor YjgA"
                     /protein_id="HSR65031.1"
                     /translation="MRGRDPDSGDFLAPSRSAQRRAALDVLALGQKLSTLTDAQLARL
                     PIPDGLLPHIVETRRITSHVAHKRQLAFLAKQMRREDEETLDAIRDALDEHGESARRE
                     AALMHRVEALRTRLLADGDAALAELLAEHPHADRQHLRQLVRNALDERHRNKPPHAFR
                     ELYRELRELLSGGGKDEDPSGAGELADDAGT"
     gene            complement(1918..3360)
                     /gene="tldD"
                     /locus_tag="VLM17_05430"
     CDS             complement(1918..3360)
                     /gene="tldD"
                     /locus_tag="VLM17_05430"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HSR65032.1"
                     /translation="MSQSLSLAESRLLLPAGLDASGLDRAFGALLGPGIDFGDLYFQH
                     ARRESWTVEDGIVKEGAHSIEQGVGVRAISGEKTGFAYSDDINTAALLEAAGSARAIS
                     RQGSAQAARVLVPATGRSLYPANDPIDGLGNEEKVEALRRVDRMIRAADPRVQQVMVS
                     LAGGVDTVLVARSDGVLAADVRPLVRINVQVIVEQNGRRESGYAGGGGRCSYAELLAD
                     GKPEHFAREALRQALVNLEAVDAPAGMMPVVLGNGWPGVLLHEAVGHGLEGDFNRKGT
                     STYAGRIGQRVASPGVTIVDDGTLQGRRGSLNVDDEGTPTQCTTLIEDGVLAGYMQDT
                     LNARLMGMQPTGNGRRESFAHLTMPRMTNTYMLAGAHDPEEMIRSVKKGLYAVNFGGG
                     QVDITSGKYVFSATEAYLIEDGRITAPVKGATLIGNGPETMQRVRMVGNDLALDEGVG
                     VCGKDGQSVPVGVGQPSLLIDQLTVGGTQA"
     gene            complement(3490..>4723)
                     /locus_tag="VLM17_05435"
     CDS             complement(3490..>4723)
                     /locus_tag="VLM17_05435"
                     /inference="COORDINATES: protein motif:HMM:NF024893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal region-containing protein"
                     /protein_id="HSR65033.1"
                     /translation="VAEPPPASGLVASGHAATLDALDWMTVARGSQGSGGKGGVALQR
                     VDVGADHLHLLGGDFADTHLQVEPVAGGLSVQLAGPALAGRLNVPDADGATIAGRFTR
                     VHWRDIPVAVADPADAGAAAADVNPAKVPPLALDIDDMHLRDAALGNTTLRTRPLPNG
                     LRIEQLQTRSPTQQLAVQGDWTGSGANARTRLSLAIDSQDFGALLAGFGYGGQLAGGK
                     GKASLDATWAGGPSAFGIGSLDGLLHLDARDGQLTELEPGAGRVLGLLSIAQLPRRLT
                     LDFRDLFSKGLAFDRLHGDVRLGAGLARTDNLAIDGPAADIRIHGAADLRAQAFDQTV
                     EVFPKTGNLLTVAGALAGGPVGAAIGAAANAMLQKPLGRIAAKTYRVTGPWKDPKVEV
                     ISREQSRVTAQRTDAGSG"
BASE COUNT          644 a         1719 c         1696 g          664 t
ORIGIN      
        1 ccggccgcgc cgcgcgagta gtcgccggtc accgggttga tgccctgccc catcagctcg
       61 gtcaccagca gcccgcggcc catgccgcgc agcagcgcgt cgaagtcgcc ggcattggcc
      121 gccacctgca ggttgtggac gcccccggca ttggcggtcg tctgcaaccc gagcttgcgc
      181 gccgaatagc tgccgagcac gtagcgctgc agcacgccgt cccgcaccag cggcgactgc
      241 cgcgtggcca ccccctccat gtcgaacgcg gccgagcgga aaccgcggcg caggaacgga
      301 agctcctcga tcgagaacca gccggggaac agctgctggc cggcgctgtc gaccaggaag
      361 ctcgccttgc ggtacagcgc gccgccagac accgccgcca gcaggtggcc gatgagcgag
      421 cgcgccacct cggccgcgaa cagcaccggc atttcgccgg tcgcgaccga gcgcggctgc
      481 aggcgcgcgg cggcccgctc ggcggcgcgg cgcccgaccg ccgccggcgc ctcgaggtct
      541 tccggcgcga gcgcggtcgt gtaccagccg tcgcgctgca tgccttcgcc gcgcccggcg
      601 atcagcgcgc agccgatggt gtgctgggtg ctgcgctcgc ggccgacgaa gccgtgcgag
      661 ttggcgtaga cgtgcagcga tgcgccggtg ccgatcgagg cgccatccga attcccgatg
      721 cgctggtcgc tctcgcgacc ggcgttctcg caggcgagcg cgaggtcgac ggcgcggtcg
      781 gcctcgagca tccaagggtg ccacatgtcg aaatcaggga agctcccgcc ttccgggcgt
      841 gccatcagcc cggcgtcggc gaggccggcg cacggatcct cctcggtatg ccgggcaatc
      901 gcgcaggcct ggtcgacggt ggcgtcgagg ctggattcgc gcaggtcggc ggtgctcgcg
      961 ctgcccttgc gcctgccgaa gaacacggtg accgcgatgc cgcgatcgcg ggtggactcg
     1021 accgtttcca cctcgcccat gcgcacgttg acgttgagtc cgtgctcctc ggagcaggac
     1081 acctcggcct gcgtcgctcc gcgctggcgg cagcggtcga gcagttgccc ggcgatggag
     1141 ccgagtcgat cgagccggtc gcggctgccg tcgtcggcgg gcggcgatga agtgacgatg
     1201 gagttcaatg gcttatcctt gtcgatgctg tcgtcgcgga cccggcggga ttgcttccgc
     1261 aaagcgccga acgcaggctt ccccgcgggt cccgggacga caagagagga gacacacgat
     1321 gcggggacgc gatcccgact ccggcgattt cctggccccc agccgcagcg cgcagcgccg
     1381 cgcggcgctg gacgtgctcg cgctcgggca gaagctgtcc acgctgaccg acgcgcagct
     1441 cgcgcgcctg ccgatccccg acggcctgct gccgcacatc gtcgagacgc gccgcatcac
     1501 ctcgcacgtc gcgcacaagc ggcaactcgc cttcctcgcc aagcagatgc gccgcgagga
     1561 cgaggaaacg ctggacgcga tccgcgacgc gctggacgaa catggcgaga gcgcgcgccg
     1621 cgaggccgcg ctgatgcacc gggtggaggc gctgcgcacg cgcctgctgg ccgatggcga
     1681 cgccgcgctc gccgagctgc tggccgagca cccgcatgcc gaccgccagc acctgcgcca
     1741 gctggtccgc aacgcgctgg acgaacgcca tcgcaacaag ccgccgcacg cgttccgcga
     1801 gttgtaccgc gagttgcgcg aactcctctc cgggggcggc aaggacgagg acccgtccgg
     1861 cgcgggcgag ctggcggacg acgccggcac ctgacccgcg ccgcggtcga cgcctgctca
     1921 cgcctgcgtc ccgcccaccg tcagctggtc gatcagcagc gacggctggc cgaccccgac
     1981 cggcacgctc tgcccgtcct tgccgcagac gccgacgcct tcgtcgagcg cgaggtcgtt
     2041 gccgaccatg cgcacgcgct gcatcgtttc cgggccgttg ccgatcagcg tcgcgccctt
     2101 caccggcgcg gtgatcctgc cgtcctcgat caggtaggcc tcggtcgccg agaacacgta
     2161 cttgccgctg gtgatgtcga cctggccgcc gccgaagttg accgcgtaca ggcccttctt
     2221 caccgagcgg atcatctcct ccgggtcgtg tgcgccggcc agcatgtagg tgttggtcat
     2281 gcgcggcatg gtcaggtgcg cgaacgactc gcgccggccg ttgccggtcg gctgcatgcc
     2341 catcagccgc gcgttgagcg tgtcctgcat gtagccggcg agcacgccgt cctcgatcag
     2401 cgtcgtgcac tgcgtcggcg tgccttcgtc gtcgacgttg agcgagccgc gacggccctg
     2461 gagggtgccg tcgtcgacga tggtcacccc gggggaagcc acgcgctggc cgatgcggcc
     2521 ggcgtaggtc gaggtgccct tgcggttgaa gtcgccctcg aggccgtggc cgaccgcttc
     2581 gtgcagcagc acgcccggcc agccgttgcc gagcaccacc ggcatcatcc cggcgggcgc
     2641 atcgaccgcc tccaggttga ccagcgcctg gcgcagcgcc tcgcgcgcga aatgctcggg
     2701 cttgccgtcg gcgagcagct cggcgtacga acagcgaccg ccgccgccgg cgtaaccgct
     2761 ctcgcggcgg ccgttctgct cgacgatcac ctgcacgttg atgcgcacca gcgggcgcac
     2821 gtcggcggcc agcacgccgt cgctgcgggc gacgagcacc gtgtcgacgc cgccggccag
     2881 gctcaccatc acctgctgca cgcgcgggtc ggccgcgcgg atcatgcgat ccacccgccg
     2941 cagggcctcg accttctcct cgttgccgag gccgtcgatc ggatcgttgg ccgggtaaag
     3001 actgcgcccg gtcgccggta ccagcacgcg cgcggcctgt gcgctgccct ggcgcgagat
     3061 cgcccgcgcc gaaccggccg cttccagcag cgccgcggtg ttgatgtcgt ccgaatacgc
     3121 gaaaccggtc ttctcgccgg agatcgcgcg cacgcccacg ccctgctcga tcgaatgcgc
     3181 gccttccttg acgatgccgt cctcgaccgt ccagctctcg cgtcgcgcat gctggaaata
     3241 caggtcgccg aaatcgatgc cgggcccgag cagcgcgccg aacgcacggt cgagcccgct
     3301 ggcgtcgagg ccggcgggca gcagcaggcg ggattcggcg aggctcagcg actggctcat
     3361 tgcgttcctt cgtggggggc cgccgggccc atgcggccgc aggcggcgtg atgtcggcgc
     3421 gaaatgcgcg atgtccgcgc gggacgagga tacgaagttg cgaccgatct gcggccgcgc
     3481 tggcgcgatt caaccgctac cggcgtcggt gcgctgcgcg gtcacgcgcg actgctcgcg
     3541 gctgatcact tcgaccttcg gatccttcca cggccccgtc acgcgatagg tcttggcggc
     3601 gatgcgtcca agcggcttct gcagcatcgc attggccgcc gccccgatcg ccgcgccgac
     3661 cgggccgccc gcgagcgcgc cggcgacggt gagcaggttg ccggtcttcg ggaacacctc
     3721 gaccgtctgg tcgaaggcct gcgcgcgcag gtcggcggcg ccgtggatgc ggatgtcggc
     3781 ggccgggccg tcgatcgcga ggttgtcggt gcgcgcgagg ccagcgccga ggcgcacgtc
     3841 gccgtgcagg cggtcgaagg caaggccctt ggagaacaga tcgcggaaat ccagcgtgag
     3901 ccgccgcggc agctgggcga tgctcaacag tccgagcacg cgaccggcgc cgggttcgag
     3961 ttcggtgagc tggccgtcgc gcgcgtcgag gtgcaggagg ccatcgaggc tgccgatgcc
     4021 gaacgcggac gggccgcccg cccaggtcgc atccagcgaa gccttgccct tgccgccggc
     4081 gagctggccg ccgtaaccga agccggcgag caatgcgccg aaatcctggc tgtcgatggc
     4141 gagcgacagc cgcgtgcgcg cattcgcgcc gctgccggtc cagtcgccct gcaccgccag
     4201 ctgctgcgtc ggcgaacgcg tctgcagctg ctcgatgcgc aacccgttgg ggagcgggcg
     4261 cgtgcgcagc gtcgtgttgc cgagcgcggc gtcgcgcagg tgcatgtcgt cgatgtcgag
     4321 cgcgagtggc ggcaccttcg cggggttgac gtcggcggcg gccgcaccgg cgtccgcagg
     4381 atccgcgacg gcgacgggaa tgtcgcgcca gtgcacgcgc gtgaagcggc cggcgatggt
     4441 cgcgccatcg gcatcgggaa cgttcaggcg gccggcgagc gccgggccgg cgagctgcac
     4501 cgaaaggccg ccggcgaccg gctcgacctg caggtgcgta tcggcgaagt cgccgccgag
     4561 caggtgcagg tggtcggcgc cgacgtcgac gcgttgcagc gccacgccgc ccttgcctcc
     4621 gctgccctgg ctgccgcgcg ctaccgtcat ccagtcgagc gcgtcgagcg tcgcggcatg
     4681 gccgctggcg accaggcccg acgccggcgg cggttcggcg acg
//
LOCUS       DATIQC010000260        10561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_476968, whole genome shotgun sequence.
ACCESSION   DATIQC010000260 DATIQC010000000
VERSION     DATIQC010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 10561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10561
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_476968"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..847)
                     /locus_tag="VLM17_05440"
                     /pseudo
     CDS             complement(1..847)
                     /locus_tag="VLM17_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017160278.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
     gene            1061..1915
                     /gene="rsmI"
                     /locus_tag="VLM17_05445"
     CDS             1061..1915
                     /gene="rsmI"
                     /locus_tag="VLM17_05445"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HSR65034.1"
                     /translation="MPASPASGARPTGTLFVVATPIGNLGDLAPRALDTLRAADAICA
                     EDTRRTRQLLAHFGIDRPLLALHEHNEAQLADTLVARLLAGDSLALVSDAGTPLVSDP
                     GFRLVRAARAAGVRTSPLPGACAFVAALSVAGLPSDRFVFEGFLPAKASARRERLAQL
                     AAEPRTLVFYESAHRIEEALADMAGAFGAERPAVLARELTKLFETVLDGTLATLQVRV
                     TADADQRKGEFVLLVQGAGEEGDARVAEGRRLYAKLVGHLPPSTAAKLAAELSGAPRK
                     ALYGGGSG"
     gene            1946..2323
                     /gene="rnpB"
                     /locus_tag="VLM17_05450"
     ncRNA           1946..2323
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VLM17_05450"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2492..3232)
                     /locus_tag="VLM17_05455"
     CDS             complement(2492..3232)
                     /locus_tag="VLM17_05455"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HSR65035.1"
                     /translation="MSLSDTLDRCGNWLFRWRAAPPLLALVLLMLHLGGYRHLGGSKR
                     IDDLWQAGCLLLALLGLALRAHVVGHAPKDTSGRNAREQRAASLNTTGLYSVVRHPLY
                     AGNFLIYLGTVAFTHDPWPAAVCLLGYWLYYVPIMHAEESFLRATFGAQFADWARRTP
                     AIVPALHGWRPPALPFSRRNVLRREYNNVFSVLLAMFLLDAASESAARGHFALGPAWS
                     CALAAGFLAWLVLRTLKRHTEVLRVAGR"
     gene            complement(3283..3981)
                     /locus_tag="VLM17_05460"
     CDS             complement(3283..3981)
                     /locus_tag="VLM17_05460"
                     /inference="COORDINATES: protein motif:HMM:NF020387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES family NAD+ phosphorylase"
                     /protein_id="HSR65036.1"
                     /translation="MALFERLADFDGPVYRNITSLRASRDLFDDLVEDAAGRSAALAA
                     DLRMRSGAPGVVERGLLYSQAIAYPFASDRTVASRYGDGSVRVWYGALEEDTALAETC
                     WHQLQQLRAIEGVDAPVTRHRAVYRVHARGLFLELRGKETEHPELLDDDYAATQAIAK
                     HASAQGLPGVLYPSARWPEGSCLAAFRADPLSGPTLLYYLTYRIDPSAGEVRVERSPG
                     KRERVLRASALRRH"
     gene            complement(3981..4388)
                     /locus_tag="VLM17_05465"
     CDS             complement(3981..4388)
                     /locus_tag="VLM17_05465"
                     /inference="COORDINATES: protein motif:HMM:NF021255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin Xre/MbcA/ParS toxin-binding
                     domain-containing protein"
                     /protein_id="HSR65037.1"
                     /translation="MQPVAVPVATDLSGEDARRHLARVVAALFGKWELPGEVQLALLG
                     LSPESRKLLAQYRRGERALPNTRDTLDRAGYLLGIHKGLRLLFPEDPALRYGWVRRRN
                     RQLGDRTPLEVMLEEGMVGLARIARFVDFQRGQ"
     gene            4747..5193
                     /gene="mraZ"
                     /locus_tag="VLM17_05470"
     CDS             4747..5193
                     /gene="mraZ"
                     /locus_tag="VLM17_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0051302 - regulation of cell division
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HSR65038.1"
                     /translation="MFQGETAITIDDKGRLAVPTAYREPVAQACANRLVVTYNPFDNG
                     SLYLYPLPVWERVRDQVNALSRLRATNRNLQLKLVGAATFVELDGSGRIGIPPSMRRN
                     ADLEKRAVLVGMGDKFELWSEQAHQAQVRQTLGDADLDADLLELQL"
     gene            5190..6137
                     /gene="rsmH"
                     /locus_tag="VLM17_05475"
     CDS             5190..6137
                     /gene="rsmH"
                     /locus_tag="VLM17_05475"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014645936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HSR65039.1"
                     /translation="MTAGGAGAVPGHLPVLYGEVMEGLAVQADGTYLDGTFGRGGHAR
                     GVLDKLGPGGRLLLMDKDPAAIAVAEREFGNDPRVAIFRGSFAQLAQWDAAASGLDGV
                     LFDLGVSSPQLDVAERGFSFAKDGPLDMRMDPGSGESAAQWLARATEREIADVLFLYG
                     EERQSRRIARAIVGARAQQPIERTAQLASLIASVMPRGEQKIHPATRSFQAIRIFINR
                     ELADLETGLDAALARLKPGGRLAVISFHSLEDRIVKQFIARHAKAPPANRRLPVAQAF
                     VPTLRAIGDARKAGEAEVAGNPRARSAVLRVAEKLAGAA"
     gene            6134..6400
                     /gene="ftsL"
                     /locus_tag="VLM17_05480"
     CDS             6134..6400
                     /gene="ftsL"
                     /locus_tag="VLM17_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HSR65040.1"
                     /translation="MSSRLLVAVLVLANIASAIGVVFARHEHRQLFIQLTTLEKARDE
                     LNIEFGRLQLEQATWAESNRIDQVAREKLGMKFPESSDIVVVRP"
     gene            6400..8217
                     /locus_tag="VLM17_05485"
     CDS             6400..8217
                     /locus_tag="VLM17_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HSR65041.1"
                     /translation="MGRVTSGRRNRAQFDLRGRLLLVACALGLCSLALVGRAVDLQLV
                     DNAFYRQQGDARILREIPIPTSRGMITDRNGEPLAVSTPVESIWGNPQELLRAPDRLP
                     QLAQALGVPADLLVRKLSQRSDKEFVYLKRRINPDEAHAILALNVPGVFSQREFRRFY
                     PQGEALAHVLGFTNVDDRGQEGLELAFDDWLRGAPGAKKVIRDRRGRIVENVDLVRAA
                     EPGKDLTLSIDRRVQFLTFRELRRALLETGASSGSAVVLDIATGEVLAMANLPSFNPN
                     SVDGSARDAHRNRAVTDVIEPGSTMKPITVAAALTAGVVTPRTIIDTNPGWMPNGRYR
                     TTDTVNHGVLDVTGVITKSSNVGAAKIAQRLGNEQFYDFVRRFGYGVAPHSGFPGESA
                     GVLMPPSRWSGTTKQTMSYGYGMSATPLQIAEVYAALANGGQLRAPTFVRGQRNEATQ
                     VLDPKIAHEVMKMMQTVTEPGGTATTAAILGYHVAGKTGTARMASNGGYARRYVSVFA
                     GVVPVDNPRFSMVVVVNDPDPTRRGYYGGSVSGPVFHDVMEGALRLMDVPPDDIDTWI
                     AAQAAAEAGRAAGTHMPVPAALAPAAALQPGPSAQGAMR"
     gene            8214..9695
                     /locus_tag="VLM17_05490"
     CDS             8214..9695
                     /locus_tag="VLM17_05490"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HSR65042.1"
                     /translation="MSRAMRLAELLPDVAGVPVDLVIGGLKQDSRLLRAGDAFVAIAG
                     FGAHGLKFVAQARAAGASAILFEPPASADLPAPADAIAVPQLRARLGELGDRFHGEPS
                     RAMTVVGVTGTNGKTSTVQLLAQAWSLEGRRAGSIGTLGAGLHGEVVPTGFTTPLVLQ
                     LHELLAQLRDAGARAVAMEVSSHALDQGRVDGVHFEVAVFTNLTRDHLDYHGTMDAYG
                     AAKAKLFAWPGLRAAVINLDDPFGRALLAALPAGVHGVGVSSRGAQAELRAENITLER
                     DGIAFDLLVGDLRHGVRSPLLGRFNVDNLLVVAGVLHALGGTPESIVAVLEHLQPVAG
                     RMNRLGGGDQPLVVIDYAHTPDALEQALATLRAHGPRQLVCVFGCGGERDRGKRPQMA
                     AIAEAGADRVIVTDDNPRGEDGDAIVAEIVAGFERPRAAEIERDRARAIARAIGEAGP
                     HDIVLVAGKGHEPYQEIAGVRHPFDDTAVARALLEQPGREPRA"
     gene            9692..>10561
                     /gene="murF"
                     /locus_tag="VLM17_05495"
     CDS             9692..>10561
                     /gene="murF"
                     /locus_tag="VLM17_05495"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003485287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HSR65043.1"
                     /translation="MKPVPLSRIASWTHGRLHGAAPGFDTLIDSVSTDTRTLDASDGR
                     AALFVALKGERFDGHDHVEAAAEAGARAALVSREVAADIPQVVVADTERALAAFAAAV
                     QHARGGKVVAITGSNGKTSVKTLTLAILERAGKAYANPGNRNNEIGLPLAVLDAPENA
                     DFAIYEMGAGKPGDIAYLTAIARPDVSLVNNIAPAHLERMGSLLGVADTKAAIYDALP
                     SGGVAVINADDAFAPYFAQRAHGRRLVRFGLDASADVTARDLRLDADGSTFLISTPQG
                     EAAVTLALPGRHNV"
BASE COUNT         1547 a         3771 c         3849 g         1394 t
ORIGIN      
        1 ccagcgcacg cgcctggttg ccacgcagcg cgaagaacac ggcgtcgacg ccgccgtcct
       61 tgcctgcggc ggcctgcagt gcgggcagcg cgtcggcggc gttctcgccc agcgtcacca
      121 cgtcgaccac ggtgccaccg cgcgtctgca gctgctcgcg caatgcgccg ctgctgcggc
      181 gcatgccgtc gtcgttgccc tggatgacca gcacgcggcg cagctggcgc gacagcaggt
      241 attcggccga ggcgatgccg tcgtcctccg gcgccagcga gaagctggcg ctgcccgcgg
      301 gcggcggcac gttcgcgcgg ttgagcgcga gcaccggcac gccgaggtcg gcatggaaca
      361 gcgcaccgac gtcgtcgcgg ccgagcggtc cgagcacgag gtcggcgccc gcgtcgacgg
      421 cctggcggta ggcggcaagg gcgccgccgg gcgtgccggc ggtgtcgtag aaggcgagtt
      481 ccgggcgccg gcgcgtttcg ccgtagtagc cgctgagcag gccgtcgcgc accggggcgg
      541 cggcgcgcga aaggtcgccc gacagcggca gcagcaccgc gagcttcagc ggcgggcgat
      601 agccgtcgct gtccgcggcc ggccggccgg ccgcgccgaa gcccttgctg gcgcggtcga
      661 acggccgcgg cggagcgagg ccgcggttga ggagcgcgcg gccggcgaag ttgtagagcg
      721 gatcgcccac cggcagcgcg gcggcttcgc gcgcgagggt ggcatcgtcg aggcccgcca
      781 gcaggcgagt gatcttcgcc gcgttgtcct ggcgggcggg gccggcgagg ccggcgtcct
      841 ggcgcgcgag cgcctcggct tcggcgatgg tggcgttcgc ctggccggcg cccggcgcct
      901 gcgcgcgttc gaccggggtg gtcgtgcagg cggccacgcc gacgagcagc agcgacgcga
      961 ggagcaggcg ggcggaccgc gggggctggc cagggcgcat gggactccgc gggtgcgagg
     1021 gggacgctag gattctaccg atcgcccccg tggacgcacg atgcccgctt cccccgcttc
     1081 cggtgcccgg ccaacgggca cgctcttcgt cgtcgccacg ccgatcggca acctcggcga
     1141 cctcgcgccg cgcgcgctcg acacgctgcg cgcggccgac gccatctgcg cggaggacac
     1201 ccgccgtacc cgccagctgc tcgcccactt cggcatcgac aggccgctgc tcgccctgca
     1261 cgagcacaac gaggcgcaac tcgcggacac gctggttgcg cgcctcctcg ccggcgactc
     1321 gctcgcgctg gtctccgacg cgggcacacc gctggtcagc gatcccggct tccgcctggt
     1381 gcgcgccgcg cgcgcggccg gcgtgcggac gagcccgctg cccggcgcgt gcgcgttcgt
     1441 cgccgcgctg agcgtggccg ggttgccgag cgaccgcttc gtgttcgaag gcttcctgcc
     1501 ggcgaaggcg tcggcgcgcc gcgaacgcct cgcgcaactg gcggcggaac cgcgcacgct
     1561 ggtgttctac gagtcggcgc accggatcga ggaggcgctc gccgacatgg cgggggcgtt
     1621 cggcgcggag cggcccgcgg tgctggcgcg cgaactgacc aagctgttcg agaccgtgct
     1681 cgacggcacc ctcgccacgt tgcaggtccg cgtcacggcc gacgccgacc agcgcaaggg
     1741 cgagttcgtg ctgctggtgc agggcgcggg ggaggagggc gacgcgcgcg tggccgaagg
     1801 caggcgcctc tacgcgaagc tggtcgggca cctgccgccg tcgaccgccg ccaagctggc
     1861 cgccgaactc agcggcgcgc cgcgcaaggc gctgtatggc ggcggttccg gctgaatcgc
     1921 gcgcccgtgc gacaatgcgc gcggcggagc cggccagaca gccgcgtcat ccggtcatgc
     1981 gcgtcatggc cgggtgccga ggaaagtccg ggctccacag ggcacggtgc caggtaacgc
     2041 ctgggcggcg cgagccgacg gaaagtgcaa cagaaagata ccgccgatgg cccggcgctc
     2101 tccggagcgt caggatcagg caagggtgaa atggtgcggt aagagcgcac cgcgagtcgg
     2161 gcaaccgacc ggcacggcaa accccaccgg gagcaaggcc aaatagggac cccatgacgc
     2221 ggcccgcgtc gggtccgggt aggccgctcg agcgtatcgg cgacgatgcg cctagaggaa
     2281 tggctgtcca cgacagaacc cggcttatcg gccggctccg cccctttccc cgcgcgcagc
     2341 gcggaagaag gggcacccga agtctgctac gcaaacttcg ggcccgcttc acatctccaa
     2401 tgccccgccg ctgccgcggc gccccctttg ctaaaggggg ttggggcgag attcgccatg
     2461 tccgggaaag cgcgatgacc cgcgctagat gtcagcggcc ggcgacgcgg aggacttcgg
     2521 tgtggcgctt gagcgtgcgc agcacgagcc aggcgaggaa gccggcggcg agggcgcagg
     2581 accaggccgg gccgagggcg aaatggccgc gtgccgcgga ttcgctcgcg gcatcgagca
     2641 ggaacatcgc cagcagcacg ctgaagacgt tgttgtattc gcggcgtagc acgttgcggc
     2701 gcgagaacgg caacgctggc ggccgccagc cgtgcagcgc gggcacgatc gccggcgtgc
     2761 gccgcgccca gtcggcgaac tgggcgccga aagtcgcgcg caggaagctt tcctcggcgt
     2821 gcatgatcgg cacgtagtac agccagtagc cgagcaggca caccgccgcc ggccacgggt
     2881 cgtgggtgaa ggcgacggtg ccgaggtaga tgaggaagtt gcccgcgtac agcgggtggc
     2941 gcacgaccga atacaggccc gtcgtattca ggctcgccgc gcgctgttcg cgcgcattgc
     3001 ggccggaggt gtccttgggc gcgtggccga cgacgtgcgc gcgcagcgcg aggccgagca
     3061 gcgcgagcag caggcagccg gcctgccaga ggtcgtcgat gcgcttgctg ccgccgaggt
     3121 ggcggtaacc acccaggtgc agcatcagca ggacgagcgc cagcagtggc ggtgccgcgc
     3181 gccagcggaa cagccagttg ccgcagcggt cgagggtgtc ggacagggac atcgcgcgag
     3241 gcgggcgagg gtggtggccc agcttagcgc gcgccgtggc tgtcagtgtc gacgcagcgc
     3301 gctcgcccgc agcacgcgtt cgcgcttgcc ggggctgcgt tcaacgcgca cttcgccggc
     3361 gctcgggtcg atgcggtagg tgaggtagta cagcagcgtc ggccccgaca gcggatcggc
     3421 gcggaacgcc gccaggcaac tgccctcggg ccagcgcgcc gaggggtaca gcacaccggg
     3481 cagtccctgc gccgacgcgt gcttggcgat cgcctgggtc gccgcgtaat cgtcgtcgag
     3541 cagttccggg tgttcggttt ccttgccacg cagttcgagg aacaggccgc gcgcgtgcac
     3601 gcggtagacg gcgcggtggc gcgtcaccgg cgcatccacg ccctcgatcg cgcgcagctg
     3661 ctgcagctgg tgccagcagg tttcggcgag cgcggtgtcc tcctccagcg cgccgtacca
     3721 cacgcgcacg ctgccgtcgc cgtagcggct ggcgaccgtg cggtcgctgg cgaacgggta
     3781 cgcgatcgcc tgcgagtaca gcagcccgcg ttcgaccacg ccaggcgcgc cactgcgcat
     3841 gcgcaggtcg gcggcgagcg cggcggagcg tccggccgca tcctcgacga ggtcgtcgaa
     3901 caggtcccgc gacgcgcgca gcgaggtgat gttgcggtag accggcccat cgaaatcggc
     3961 gagccgttcg aacaacgcca tcactggccc cgctggaaat cgacgaagcg tgcgatgcgc
     4021 gccagcccga ccatgccttc ctccagcatg acctcgagcg gcgtgcggtc gccgagctgg
     4081 cggttgcggc gcctgaccca gccgtagcgc agcgcggggt cctcggggaa cagcaggcgc
     4141 aggcccttgt ggatgccgag caggtagccg gcgcgatcca gggtgtcgcg ggtgttgggc
     4201 agcgcgcgtt cgccgcggcg gtactgcgcc agcagcttgc ggctctccgg gctcaggccg
     4261 agcagggcga gctggacctc gcctggcagc tcccacttgc cgaacagggc ggcgacgacc
     4321 cgggcgaggt gccgccgcgc gtcttcgccg gaaaggtcgg tggcgactgg cacggcgacc
     4381 ggttgcatgc ggatgcctgt gttgtggtgt ccccatcata acgggataac tcccctacgg
     4441 tgcctccggc cgaccggtgc cgccgtgttt tcgcatcgca gcatgggcgc cgagcggcga
     4501 ggtgggctgc cggctgcgac caccatcgtt cttcgaaatc tcaaaaattg agacgaaaca
     4561 gcggcttgtg gataaggctt gaacaagctt ctgaagtctg gcgcaagccc ttgatgtgaa
     4621 aagcgaattt cacctcgcca agttgttgac aaccctgtgg tgcgtgccta aggtggcggc
     4681 ttgtgggaaa accggggaat tcgtggtttt cctgtccgcc aaccagcggg gcctccaggg
     4741 cagggcatgt tccagggcga aaccgccatc accatcgacg acaagggccg gctggcggtg
     4801 cccaccgctt accgcgagcc cgtcgcgcag gcgtgcgcca atcgcctggt ggtgacctac
     4861 aacccgttcg acaacgggtc gctctacctg tacccgctgc cggtctggga gcgcgtgcgc
     4921 gaccaggtca acgcgttgtc gaggctgcgc gcgaccaacc gcaacctgca gctcaagctc
     4981 gtcggcgccg cgaccttcgt cgagctcgac ggcagcggcc gcatcggcat cccgccgagc
     5041 atgcggcgga acgcggacct ggagaagcgc gccgtgctgg tcggcatggg cgacaagttc
     5101 gaactgtgga gcgagcaggc acaccaggcg caggtgaggc agaccctcgg ggatgccgac
     5161 ctggacgccg acctgctcga gctgcagctg tgacggcggg tggcgcgggc gccgtgcccg
     5221 gccaccttcc ggtgctctac ggcgaggtca tggaagggct cgcggtgcag gcggatggaa
     5281 cgtatctcga cggcacgttc gggcgcggcg ggcacgcgcg cggcgtgctc gacaagctag
     5341 ggcccggagg ccggctgctg ctgatggaca aggatcccgc cgcgatcgcc gtggccgaac
     5401 gcgagttcgg caacgacccg cgcgtcgcga tcttccgcgg cagcttcgcg cagctcgccc
     5461 agtgggacgc cgccgccagc gggctcgatg gcgtgctgtt cgacctcggc gtgtcctcgc
     5521 cgcagctcga cgtggccgag cgcgggttct cgttcgccaa ggacgggccg ctcgacatgc
     5581 gcatggatcc cggcagcggc gaaagcgcgg cgcagtggct ggcgcgcgcc accgagcgcg
     5641 agatcgccga cgtgctgttc ctctacggcg aggagcgcca gtcgcgccgc atcgcccgcg
     5701 cgatcgtcgg cgcgcgcgcg cagcagccga tcgaacgcac cgcccagctc gcgtcgctca
     5761 tcgcctcggt gatgccgcgc ggcgaacaga agatccaccc cgcgacgcgc agcttccagg
     5821 cgatccgcat cttcatcaac cgcgagctgg ccgaccttga aaccggcctg gacgccgcac
     5881 tggcgcgcct gaagccgggc ggccggcttg ccgtcatcag cttccattcg ctggaagacc
     5941 gcatcgtcaa gcagttcatc gcccgccatg ccaaggcgcc gccggccaac cgccggctgc
     6001 cggtggcgca ggcgttcgtg ccgacgctgc gcgcgatcgg cgatgcacgc aaggccggcg
     6061 aggcggaagt cgccggcaat ccgcgcgcgc gcagcgcggt gctgcgcgtg gcagaaaagc
     6121 tcgcgggggc cgcatgagct cgcggctgct ggtcgccgtg ctggtgctcg ccaacatcgc
     6181 ctcggcgatc ggggtggtgt tcgcgcgcca cgagcatcgc cagctgttca tccagctgac
     6241 cacgctggag aaggcccgcg acgagctcaa catcgagttc ggccgcctgc agctggagca
     6301 ggcgacctgg gccgagagca accgcatcga ccaggtcgcg cgggagaagc tcggaatgaa
     6361 gttccccgag tcgagcgaca tcgtcgtggt gcgtccgtga tcggccgcgt cacgtccggc
     6421 cgccgcaacc gcgcgcagtt cgacctgcgc ggccggctgc tgctggtcgc ctgcgcgctg
     6481 gggctgtgct cgctggccct ggtcggccgc gcggtcgacc tgcagctggt cgacaacgcc
     6541 ttctaccgcc agcagggcga tgcccgcatc ctgcgcgaga tcccgatccc gacctcgcgc
     6601 ggcatgatca ccgaccgcaa cggcgagccg ctcgcggtgt cgacgccggt cgagtccatc
     6661 tggggcaacc cgcaggagct gctgagggcg cccgaccgcc tgccgcagct cgcgcaggcg
     6721 ctgggagtgc cggcggacct gctggtgcgc aagctcagcc agcgcagcga caaggaattc
     6781 gtctacctca agcgccgcat caaccccgac gaggcgcatg cgatcctcgc gctgaacgtg
     6841 ccgggcgtgt tctcgcagcg cgagttccgc cgcttctacc cgcagggcga ggcgctggcg
     6901 cacgtgctcg gcttcaccaa cgtcgacgac cgcggccagg aggggctcga actcgccttc
     6961 gacgactggc tgcgcggcgc gccgggcgcg aagaaggtga tccgcgaccg ccgcggccgc
     7021 atcgtcgaga acgtcgacct ggtgcgcgcc gcggagccgg gcaaggacct caccctttcg
     7081 atcgaccgcc gcgtccagtt cctcaccttc cgcgaactca ggcgcgcgct cctcgagacc
     7141 ggcgcgagca gcggctcggc ggtggtgctc gacatcgcca ccggcgaagt gctggcgatg
     7201 gccaacctgc cgtccttcaa cccgaattcg gtcgacggca gcgcgcgcga cgcgcaccgc
     7261 aaccgcgcgg tcaccgacgt gatcgaaccg ggctcgacga tgaagccgat caccgtcgcc
     7321 gcggcgctca ccgccggcgt ggtcacgccg cggacgatca tcgacaccaa cccgggctgg
     7381 atgccgaacg gccgctaccg caccaccgac accgtcaacc acggcgtgct cgacgtgacc
     7441 ggcgtgatca ccaagagctc gaacgtcggc gcggcgaaga tcgcgcagcg gctgggcaac
     7501 gagcagttct acgacttcgt gcgccgtttc ggctacggcg tcgccccgca cagcggtttt
     7561 cccggcgaat cggccggcgt gctgatgccg ccgtcacgct ggagcggcac caccaagcag
     7621 accatgtcct acggctacgg catgtcggcg acgccgctgc agatcgccga ggtgtacgcc
     7681 gcgctcgcca acggcggcca gctgcgcgcg ccgaccttcg tcagggggca gcgcaacgag
     7741 gccacgcagg tgctcgatcc gaagatcgcg cacgaagtga tgaagatgat gcagacggtg
     7801 accgaacccg gcggcaccgc gaccaccgcg gcgatcctcg gctaccacgt cgccggcaag
     7861 accggcaccg cgcgcatggc cagcaacggc ggctacgcgc gccgctatgt ctcggtgttc
     7921 gccggcgtgg tgccggtcga caacccgcgc ttctcgatgg tggtggtggt caacgacccg
     7981 gatccgaccc gccgcgggta ctacggcggg tcggtgtcgg gcccggtgtt ccacgacgtg
     8041 atggaaggcg cgctgcggct gatggacgtg ccgccggacg acatcgatac ctggatcgcc
     8101 gcgcaggccg cggcggaagc cggacgcgct gcgggtaccc acatgccggt ccccgccgcc
     8161 ctcgctcccg ccgcggcgct gcagccgggg ccgtccgcgc agggagcgat gcgatgagcc
     8221 gcgcgatgcg cctcgccgag ctgctgcccg acgtggccgg cgtgccggtc gacctcgtca
     8281 tcggtggcct gaagcaggac agccgcctgc tgcgcgcggg cgatgccttc gtcgcgatcg
     8341 ccggcttcgg cgcgcacgga ttgaagttcg tcgcccaggc ccgcgccgcc ggggcgagcg
     8401 cgatcctgtt cgaaccgccc gcgtccgccg acctgcccgc gcccgccgac gcgatcgcgg
     8461 tgccgcagct gcgcgcgcgc ctgggtgaac tcggcgaccg cttccacggc gagccttcgc
     8521 gcgcgatgac ggtggtgggc gtgaccggca ccaacggcaa gacgtcgacc gtgcagctgc
     8581 tggcgcaggc ctggtcgctc gagggccggc gcgcgggcag catcggcacc ctcggcgccg
     8641 gcctgcatgg cgaggtggtg ccgaccgggt tcaccacgcc gctggtgctg cagctgcacg
     8701 aactgctcgc gcagctgcgc gacgccggtg cgcgggcggt ggcgatggag gtgagctcgc
     8761 acgcgctcga ccagggccgc gtcgacggcg tgcacttcga agtcgcggtg ttcaccaacc
     8821 tcacccgcga ccacctcgac taccacggca ccatggacgc ctacggcgcg gccaaggcga
     8881 agctgttcgc ctggcccggc ctgcgcgcgg cggtcatcaa cctggacgat ccgttcggtc
     8941 gcgcgctgct cgccgcgctg ccggcgggcg tgcatggcgt gggcgtcagc tcgcgcgggg
     9001 cgcaggccga gctgcgcgcg gaaaacatca cgctcgagcg cgacggcatc gccttcgacc
     9061 tgctggtcgg cgacctgcgc cacggagtcc gttcaccgct gctcggccgc ttcaacgtcg
     9121 acaacctgct ggtggtggcg ggggtattgc acgccctggg cgggacaccg gagtcgatcg
     9181 tggccgtcct cgagcacctg cagccggtgg ccgggcgcat gaaccgcctc ggcggcggcg
     9241 accagccgct ggtcgtcatc gactacgcgc acacgcccga cgcgctggaa caggcgctgg
     9301 ccacgctgcg cgcgcacggg ccgcgacagc tggtctgcgt gttcggctgc ggcggagaac
     9361 gcgatcgcgg caagcgcccg cagatggcgg cgatcgcgga agccggcgcg gaccgcgtga
     9421 tcgtcaccga cgacaacccg cgcggcgagg acggcgacgc gatcgtcgcc gagatcgtgg
     9481 cgggcttcga acgcccgcgc gccgcggaga tcgaacgcga ccgcgcgcgc gcgatcgccc
     9541 gcgcgatcgg cgaggcgggc ccgcacgaca tcgtcctcgt tgccggcaag ggccacgagc
     9601 cgtaccagga aatcgccggc gtgcgccatc ccttcgacga caccgcggtg gcccgcgcgc
     9661 tgctggaaca gcccggccgg gagccgcgcg catgaagccg gtcccgctca gccgcatcgc
     9721 cagctggacg cacggccgcc tgcacggcgc cgcccccggc ttcgacaccc tgatcgactc
     9781 ggtgtcgacc gacacccgca ccctcgacgc cagcgatgga cgcgccgcgc tgttcgtcgc
     9841 gctcaagggc gaacgtttcg acggccatga ccatgtcgag gccgcggcgg aggccggcgc
     9901 gcgcgccgcg ctggtctcgc gcgaagtggc cgccgacatc ccgcaggtcg tggtcgccga
     9961 caccgagcgc gcgctcgccg ccttcgccgc cgccgtccag catgcgcgtg gcggcaaggt
    10021 cgtcgccatc accggcagca acggcaagac cagcgtcaag acgctcacgc tcgccatcct
    10081 cgagcgcgcc ggcaaggcct acgccaaccc cggcaaccgc aacaacgaga tcggcctgcc
    10141 gctggcggtg ctggacgcgc ccgagaacgc cgacttcgcg atctacgaga tgggtgccgg
    10201 caagccgggc gacatcgcct acctcaccgc gatcgcgcgg ccggacgttt cgctcgtcaa
    10261 caacatcgcg ccggcgcacc tggagcgcat gggcagcctg ctcggcgtgg ccgacaccaa
    10321 ggcggcgatc tacgacgcgt tgcccagcgg cggcgtcgcg gtcatcaacg ccgacgatgc
    10381 gttcgccccc tatttcgccc agcgcgcgca cgggcgccgg ctggtccgct tcggcctgga
    10441 cgccagcgcc gacgtcaccg cgcgcgacct gcgcctggat gccgacggat cgacgttcct
    10501 gatctccacg ccgcagggcg aggcggcggt gacgctcgcg ctgcccggcc gccacaacgt
    10561 g
//
LOCUS       DATIQC010000261         2164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_300174, whole genome shotgun sequence.
ACCESSION   DATIQC010000261 DATIQC010000000
VERSION     DATIQC010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300174"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..458
                     /locus_tag="VLM17_05500"
     CDS             66..458
                     /locus_tag="VLM17_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019659260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HSR65044.1"
                     /translation="MGAAERIDRRIASLGDWRGERLAEVRALIHAVDPDVVEEWKWMG
                     TPVWSHQGMVVLANPHKDKVKVTFFHGAQLADPDGLFNAGLTGNKWRAIDLREGDPLD
                     HAAFARLLRAAIDYNRAHAVPKSRGSRA"
     gene            567..1427
                     /gene="ygiD"
                     /locus_tag="VLM17_05505"
     CDS             567..1427
                     /gene="ygiD"
                     /locus_tag="VLM17_05505"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007082963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HSR65045.1"
                     /translation="MPAAMPAAFLGHGSPMNALERNRYTEAWRAFGASVPRPRAILMV
                     SAHWYVNATAVTAMATPRTIHDFYGFPPELFAMRYPAPGLPALAEEIADAASPDYVGA
                     DLDSWGLDHGTWSVLVHAFPAADVPVVQLAINARQPPDYHARLGERLAALRTRGVLLM
                     GSGNVVHNLRAMARDQPDGAYDWARRFDEHARQVVTTRPADAPSLVAHPDFPRAAPTP
                     EHFLPLLYITGFAAAAGEAPEVLVDGYSYGSLSMASFAVGAARAPGQPAAASGVPPLE
                     STAPPEDTNL"
     gene            complement(1479..>2164)
                     /locus_tag="VLM17_05510"
     CDS             complement(1479..>2164)
                     /locus_tag="VLM17_05510"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65046.1"
                     /translation="RLGLAFNTMADRVGALLDAHRRMLANASHELRSPLARIRLAVEL
                     HAATPGEPLLAGIRRDCAEIDGQLEEILLAAKLDAVGREVDEEVDLAGLLAEECARLD
                     VPLEATALDVRGDPRLLRRALRNLLENAVTHGRAGVAATLRRDGADAVAEVSDRGPGI
                     PPAERERIFEPFYRPARSRETGTGWGLGLALVRQIATQHAGVVRCLPRDGGGCLFALR
                     LPAASAPRD"
BASE COUNT          293 a          801 c          803 g          267 t
ORIGIN      
        1 cgacgaaggc gacgaaggcc gcgaggagcg tggcgaagcg cgccggcggg aaggacgcgg
       61 aggcggtggg cgccgccgaa cgcatcgacc gcaggatcgc aagcctcggc gactggcgcg
      121 gcgaacgcct ggccgaggtc cgcgcgctga tccacgccgt cgaccccgac gtggtcgagg
      181 aatggaagtg gatgggcacg ccggtgtggt cgcaccaagg catggtcgtg ctcgccaacc
      241 cgcacaagga caaggtgaag gtcaccttct tccacggcgc gcagctcgcc gatcccgacg
      301 gcctgttcaa cgccgggctc accggcaaca agtggcgcgc gatcgatctg cgcgaaggcg
      361 acccgctcga ccacgccgcg ttcgcgcggc tgctgcgcgc ggcgatcgac tacaaccgcg
      421 cgcacgcggt gccgaagagc cgcgggtcgc gcgcgtaggg cccgaggctg gcgatcgccg
      481 gcgtcgccgg catcgcatcg ccgtgaaggc cggtgtgcgg gccgcgtcgc taggatggac
      541 gcctcagctg ccgcgggaga tccgccatgc cggccgccat gcccgccgcc ttcctcggcc
      601 acggcagccc gatgaacgcg ctcgaacgca accgttacac cgaggcatgg cgggcgttcg
      661 gcgcgtcggt gccgcgtccg cgcgcgatcc tgatggtgtc cgcgcactgg tacgtcaacg
      721 cgaccgcggt gaccgcgatg gcgacgccgc gcaccatcca cgacttctac ggctttccgc
      781 cggaactgtt cgcgatgcgt tacccggcgc ccggcctgcc cgcgctggcc gaggaaatcg
      841 ccgacgcggc aagtccggac tacgtcggcg ccgacctcga cagctgggga ctggaccacg
      901 gcacctggtc ggtgctggtg catgcctttc ccgccgccga cgtgccggtg gtgcagctgg
      961 cgatcaacgc gcgccagccg ccggactacc acgcgcggct gggcgagcgg ctggcggcac
     1021 tgcgcacgcg cggggtgctg ctgatgggca gcggcaacgt ggtgcacaac ctgcgcgcga
     1081 tggcgcgcga ccagcccgat ggtgcgtacg actgggcccg ccgcttcgac gagcacgcgc
     1141 gccaggtcgt caccacgcgc ccggccgatg cgccctcgct ggtcgcgcat ccggacttcc
     1201 cgcgcgccgc gccgacgccc gagcacttcc tgccgctgct ctacatcacc ggcttcgccg
     1261 ccgcggcggg cgaggcgccg gaggtgctgg tcgacggcta cagctacggc tcactgtcga
     1321 tggcctcgtt cgctgtcggc gcggcacggg cacccggtca acccgccgct gcctccggcg
     1381 tgccaccgct ggaaagcacc gcgccgcccg aggatacgaa cctgtaggcg cgcgtggcgt
     1441 gcaccgcgca gcgcgccgcg gcggccaggc gtcgcgcgtc agtcgcgcgg cgccgatgca
     1501 gccggcaggc gcaacgcgaa caggcaaccg ccgccgtcgc gtggcaggca ccgcaccacg
     1561 ccggcgtgct gcgtggcgat ctgccggacg agggccaggc cgaggcccca gccggtgccg
     1621 gtctcgcgcg accgcgcggg ccggtagaac ggttcgaaga tgcgttcgcg ctcggctggc
     1681 gggatgcccg gcccgcgatc gctgacctcg gccacggcgt cggcgccgtc gcggcggagc
     1741 gtggccgcga cccccgcccg gccgtgggtg accgcgttct cgagcaggtt gcgcagggcc
     1801 ctgcgcagca gccgcggatc gccgcgcaca tcgagcgccg tcgcctcgag cggcacgtcc
     1861 aggcgcgcgc actcctcggc gagcaggccg gccaggtcga cctcctcgtc gacttcgcgc
     1921 ccgaccgcgt ccagcttggc ggcgagcagg atttcctcga gctggccgtc gatttccgcg
     1981 cagtcgcggc ggatgccggc gagcagcggc tcgccgggcg tcgccgcgtg cagctcgacc
     2041 gccaggcgga tgcgcgcgag cggcgagcgg agttcgtgcg acgcattggc gagcatgcgg
     2101 cggtgtgcat ccagcagcgc gccgacgcgg tcggccatcg tgttgaaggc caggcccagg
     2161 cgcg
//
LOCUS       DATIQC010000262         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_618139, whole genome shotgun sequence.
ACCESSION   DATIQC010000262 DATIQC010000000
VERSION     DATIQC010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618139"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..628)
                     /locus_tag="VLM17_05515"
     CDS             complement(<1..628)
                     /locus_tag="VLM17_05515"
                     /inference="COORDINATES: protein motif:HMM:NF037667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family peptidase"
                     /protein_id="HSR65047.1"
                     /translation="MRRTVLFAALAAASGLAFAAAEVPTGPLPRTVVPSEVRLELKLD
                     PAQARFSGSTSISVDVASPTRVIWMHGQGLKITRARYMPRNGRNQELTAVEADVSGVL
                     ELTAPKTIAPGKGVIEITYEAPFGELQGAYRVKPDGHDYIVTQMEPLGARHTFPGFDE
                     PSFKQPWDITLIVPEDDTAVANSAEVSTEKLGDGWKKVTFARTEALPSY"
     gene            complement(759..>1609)
                     /locus_tag="VLM17_05520"
     CDS             complement(759..>1609)
                     /locus_tag="VLM17_05520"
                     /inference="COORDINATES: protein motif:HMM:TIGR03871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HSR65048.1"
                     /translation="TLGRGGGAMKSPGTVALAWALAILCGCQAANARELRVCADPNNL
                     PFSNAAGEGFENRIVEVVAKDLGARVRYTWWAQRRGMIRNTLAAGECDVIPGIASSSG
                     MSGTTDPYYRSGYVFVSRSDRRLADLRGFDDPRLRRLVVGVQLIGDDGANTPPADALA
                     RRGIVDNVRGFMVYGDYRDAAPQAAIVDAVAHGDVDVALVWGPTAGWFAARSHAPLTL
                     VPVMPWLDGPRLPMAFDVSMGVRREDRALRRELDAALERNRAAIARILAAYHVPRVAD
                     AAGSAP"
BASE COUNT          236 a          558 c          592 g          223 t
ORIGIN      
        1 ggtagctcgg cagcgcttcg gtgcgcgcga acgtcacctt cttccagcca tcgccgagct
       61 tctcggtgct gacctcggcg ctgttggcga cggcggtgtc gtcttccggg acgatcaggg
      121 tgatgtccca gggctgcttg aagctcggct cgtcgaagcc cgggaaggtg tggcgcgcgc
      181 cgagcggttc catctgggtg acgatgtagt cgtggccgtc gggcttgacc ctgtaggcgc
      241 cctggagctc gccgaagggc gcttcatagg tgatctcgat cacgcccttg ccgggcgcga
      301 tggtcttcgg cgcggtcagc tcgagcacgc cggagacgtc ggcctcgacg gccgtgagct
      361 cctggttccg gccgttgcgc ggcatgtagc gcgcgcgggt gatcttcagg ccctggccgt
      421 gcatccagat gacccgggtc gggctggcca cgtccaccga gatcgacgtc gagccgctga
      481 agcgggcctg tgccggatcc agcttgagtt cgagccgcac ttccgagggc accacggtgc
      541 gcggcaacgg accggtcggc acctcggcgg cggcgaaagc aaggccgctg gcggcggcga
      601 gggcggcgaa caggacggtg cggcgcatga catctccccg ggaagaacgc gtcggacgaa
      661 cgcgaaaccc gtcgagccta accgcaaagg ccgcaccacc cccctgacga aagtcattgc
      721 cgccgcgcgc acccgcgccg tgcccgggcg gggacacgtc agggtgccga ccccgcggcg
      781 tcggccacgc gcggcacgtg gtaggcagcg aggatgcgcg cgatcgcagc gcggttgcgc
      841 tcgagggcgg cgtcgagttc ccggcgcagc gcgcggtcct cgcggcgcac gcccatcgac
      901 acgtcgaacg ccatcggcag ccggggcccg tccagccacg gcatcaccgg caccagcgtg
      961 agcggggcgt gcgagcgggc ggcgaaccag ccggcggtcg gcccccacac cagtgcgacg
     1021 tcgacgtcgc cgtgggcgac cgcgtcgacg atcgcggcct gcggcgcggc atcgcggtag
     1081 tcgccataca ccatgaaacc gcgcacgttg tcgacgatgc cgcgccgcgc cagcgcatcg
     1141 gcgggcggcg tattggcgcc gtcgtcgccg atcagctgca cgccgacgac gagccggcgc
     1201 aggcgcggat cgtcgaagcc ccgcaggtcg gcgagccgcc ggtccgagcg gctgacgaac
     1261 acatagccgg agcggtagta gggatcggtg gtgccgctca tgccggaact gctggcgatg
     1321 ccgggaatca cgtcgcattc gccggcagcg agcgtgttgc ggatcatccc gcggcgctgc
     1381 gcccaccagg tgtagcgcac gcgcgcaccg agatccttcg cgaccacttc gacgatgcgg
     1441 ttctcgaagc cctcgccggc ggcgttggag aacggcaggt tgttggggtc ggcgcagacg
     1501 cgcagttcgc gcgcgttcgc ggcctggcag ccgcagagga tcgccagcgc ccacgcgagc
     1561 gccacggtgc cgggcgactt catggcacca ccaccacgcc ccagggttt
//
LOCUS       DATIQC010000263        11535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_123270, whole genome shotgun sequence.
ACCESSION   DATIQC010000263 DATIQC010000000
VERSION     DATIQC010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 11535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11535
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123270"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..1282)
                     /gene="lapB"
                     /locus_tag="VLM17_05525"
     CDS             complement(101..1282)
                     /gene="lapB"
                     /locus_tag="VLM17_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003468665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HSR65049.1"
                     /translation="MTAFLNQWFWFFLLLPLAALSGWVIGRRGGERHSDSQVSKLSTT
                     YFRGLNYLLNEQPDKAIELFLHIAELDKETFETQVALGHLFRRRGEVDRAIRLHQALV
                     ERRDLSDPQKVQALLALGEDYMRSGLLDRAETVFSDLAKIDQRAPQALKHLIGIYQAE
                     REWAKAIENATRYEAVTGEPMGRLIAQFECELADRQRAGGEIDGAREAIARAYAADST
                     SVRAGMLEGRIEVETGNDAAAIRAFERAARHDPDYLPEILPGLLACYDRVGDTPGARA
                     FLAEMSEHYRGISPVLALTRLVEAEEGVGTARAYLAQQLKDRPSVRGEAALIDLTLAE
                     GADATATLTDLKHITDQLLVRNPSYRCSRCGFGARSHHWQCPSCKEWGTVKPLLNYAV
                     V"
     gene            complement(1431..1733)
                     /locus_tag="VLM17_05530"
     CDS             complement(1431..1733)
                     /locus_tag="VLM17_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011408447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HSR65050.1"
                     /translation="MTKSELIEILTQRQAHLKADDVDLAVKALLEMMGGALAEGDRIE
                     IRGFGSFSLHYRPPRTGRNPKTGEAVALPGKHVPHFKPGKELRERVSHATPVAVED"
     gene            complement(1832..3532)
                     /gene="rpsA"
                     /locus_tag="VLM17_05535"
     CDS             complement(1832..3532)
                     /gene="rpsA"
                     /locus_tag="VLM17_05535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HSR65051.1"
                     /translation="MTPAATESFAELFEQSQAHLAKLKPGAIVTGTVVDVRSDVVVIN
                     AGLKSEGIVPIEQFRNDAGEIDVGIGDTVKVALDSLENGFGETVLSREKAKRAMVWDE
                     LEEALEKNETITGRISGKVKGGFTVDIKDVRAFLPGSLVDVRPVRDPVYLEGKELEFK
                     LIKLDRKRNNVVVSRRAVVESEHSEEREQLLEKLVEGAVLKGVVKNLTDYGAFVDLGG
                     IDGLLHITDMAWKRVRHPSEVVEVGQELDVRVLKYDRERNRVSLGLKQLGEDPWDNIA
                     RRYPANTRVFGKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNPSKVVQVGDEVE
                     VMVLDVDEERRRISLGIKQVTSNPWETFAAIHKKNDKVSGQIKSITDFGIFIGLDGGI
                     DGLIHLSDISWNSTGEDIARNYKKGDTLEAVVLAVDPERERISLGVKQLEQDPMGTYV
                     ASNARGSIVKGKIKEVDAKGATVELDGGVEGYIAARDISRDRVDDASHVLKVGEEVEA
                     KIIGTDRKSRVMQLSIKAKDEADTQEALAEYNKATSDASSGTTKLGALLREQLNSKSE
                     "
     gene            complement(3677..4372)
                     /gene="cmk"
                     /locus_tag="VLM17_05540"
     CDS             complement(3677..4372)
                     /gene="cmk"
                     /locus_tag="VLM17_05540"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HSR65052.1"
                     /translation="MTDPAVPVLTLDGPSGSGKGTISRLVARRLGWHYLDSGALYRAV
                     GIAAGWADIDLSDASALVRCAFDTGVRFIDEAGDEPRVLVNDVDATTELRTETAGAAA
                     SAIAAIPEVRAALRDRQRAFRQPPGLVADGRDMGTVIFPDAVHKVFLTASAEERAERR
                     YKQLKDKGVSVTLAGLLREILARDARDASRAVAPLRPAPDAVHIDTTGLPIATVVERV
                     LALLPAPPGTDRA"
     gene            4532..4657
                     /gene="ykgO"
                     /locus_tag="VLM17_05545"
     CDS             4532..4657
                     /gene="ykgO"
                     /locus_tag="VLM17_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011098120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HSR65053.1"
                     /translation="MKVLSSLKSAKARHRDCKVVRRRGKVFVICKSNPRFKARQR"
     gene            4821..5147
                     /locus_tag="VLM17_05550"
     CDS             4821..5147
                     /locus_tag="VLM17_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009602383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65054.1"
                     /translation="MKLRHTVLLLALSGFAATASAETLLVQRVQQENAAAMPRRGMSM
                     AEVQARFGAPAERLDPRGGQKRAWPTINRWTYPAFTVYFEKDRVVDAVANKADADEIG
                     PKPPVR"
     gene            5247..6281
                     /locus_tag="VLM17_05555"
     CDS             5247..6281
                     /locus_tag="VLM17_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HSR65055.1"
                     /translation="MSDTALRLPAEWEPQSAVLVAWPHAGTDWAGRLGEVEETYVALV
                     AAITRFEDVVIVVADDDLQTYAEARLRSNRVDMERVRFVQAPYDDTWLRDSGPLTLRG
                     ADGFRLLDFRFTGWGGKFEASLDDQLVERLAEAGIFHNDSRQVVDFALEGGAIDTDGA
                     GTLLSTWQCLAERHPDAGREEIGARLAGWLQQDRVLWLDHGYLEGDDTDAHIDTLARF
                     AGEDAIVFQACDDPADSHYAELQAMAAELAALRTRDGAPYRLFPLPWPRPILDEGRRL
                     AASYANFLIVNGGVLMPAYGDPADARAAAVLEKAFPGREIVQVPCRPLIWQNGSLHCL
                     TMQLPAGLLA"
     gene            6356..7240
                     /locus_tag="VLM17_05560"
     CDS             6356..7240
                     /locus_tag="VLM17_05560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006451810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase"
                     /protein_id="HSR65056.1"
                     /translation="MTKATLPVALVQERNHGSADANLALIEQRVGEAAASGARLVLLQ
                     ELHNGAYFCQHQNVCEFAQAEAIPGPSTERLGALAKKHGVVIVSSLFERRGTGLYHNT
                     AVVLERDGSIAGKYRKMHIPDDPGFNEKFYFTPGDLGFHPIDTSVGRLGVLVCWDQWY
                     PEAARLMALAGADLLLYPTAIGWDPDDDAAEKERQRDAWILSHRGHAVANGLPVLSCN
                     RVGHEPSPIGRSGIDFWGTSHVLGPQGEFLARAGEQPELLLAEVDLRRSEDVRRIWPF
                     LRDRRIDAYGDLLRRYRD"
     gene            complement(7304..7849)
                     /locus_tag="VLM17_05565"
     CDS             complement(7304..7849)
                     /locus_tag="VLM17_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HSR65057.1"
                     /translation="MHAFAGTLWTIGHSTRAWEEFVALLREAGIARVVDVRRFAGSRR
                     NPQYSPLAMAPALGEAGIGYEPMAEFGGRRKPLPDSPNGAWRVEAFRGYADHMASDGF
                     VQARERLMTRARGERCAVMCAEAVWWRCHRRLIADDFTARGWQVLHILTAGRIEPHPL
                     NPDARMVDGVLRYPPGQPRLL"
     gene            7938..9611
                     /locus_tag="VLM17_05570"
     CDS             7938..9611
                     /locus_tag="VLM17_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003476474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HSR65058.1"
                     /translation="MTEPSSGLARTAQILRFLLKYRSAGVFTGLDLDAVDPEHAPPPA
                     TEGRPGEFVDDLEALGPAFVKIGQALSTRPDMVPPAYLAALERMQDEVAPIPADVIRA
                     VVEDELGVRISKAFANFEDLPIGCASLAQVHRATLRSGRAVAVKVQRPGVAESIRTDL
                     DALASLAGRADRMTDLGRRVHFADWVHEFRKALLAELDYTSEAENLVRFASHFRDYPE
                     LYVPAPVWDYTRSRVLTMDLVTGTKVTELSGLRRTEQKLDRLASALMRGYLDQVFVYG
                     EIHADPHPGNLLVTDDGRLALFDLGMVAHVPPKQRERLLKLLFAAVDGRGEEVANEAI
                     DLGTRLEDFDAERFVREIGHMVARYAAHTGQQGRSEGRLMLELVRLATACGLRTPPEL
                     SLLGKTLLNLQQVAALLDPDIDMKCVVEDHLEHVMRQRLRRSLSSSNMAGELIEVQAL
                     MREAPRKVSDLLSLLSENRLQVRMTGFGELMESLQKIANRIAAGLVTAALMLASALMM
                     RIESRHTLFGYPAIALLLFLLGSGLGIAIVLSALLGDRKAAPHEERGPR"
     gene            9780..>11535
                     /locus_tag="VLM17_05575"
     CDS             9780..>11535
                     /locus_tag="VLM17_05575"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR65059.1"
                     /translation="MKRARAQRLWRDLRRRRMFGAVAFYVVAAWAFVQAASIAFPAFG
                     MPEWTLRAVLVAAFAGFPVAVVLAWVFDFSARGGLRVTVPEEGKYPQGRRPPRWWLRP
                     LLAAPLLALIVGGTVWLWSSRLAHTGDSEFTRQARPDELPVVAVLPLDNLTGRRDLDW
                     TSAGIATLVRDELSQSRLIAVVSAARTIRLLAGAKDPQALLAQAADAGITHVLSGEVL
                     RTPKGLTVTSRLTDLRRNVELGANRQEGLTTDQALSAASTIASVVRQGLGLPGTEHID
                     VFAADFAARNPAAYEAFIAGMQNFLRFDYAGARTGFEAAVQRAPDFAMARYRLAHTLA
                     ALGDTAGALRQVEAARRDAARLPERDRDYIAAGEAYFRRDYPAAEARYRAVLAQHPYE
                     SEARVLLMYVLIDEDRSADALAEAETLVQQDPGDEVGWSAVADQSLRLGHYARADEAI
                     ARLLQIAPDNPNAHYLAGESAFLRGQLERADARYREALEHDPAFGDARLRLARIDVLR
                     NQPQAAIAGLQSMLGGRFAPSLRISAAFDLADLLRASGRCDEALHALDQAHADIAAEQ
                     VRAALELATRARCALDAGD"
BASE COUNT         1632 a         4139 c         4000 g         1764 t
ORIGIN      
        1 atcaggcgat gggagagcgc atagcggcgg gcccaccagg tcccgatgca ggccacgacg
       61 aagatgaggc cgaccccagc gggccagcgg gtcaccacgc tcagaccacc gcgtagttga
      121 gcaggggctt gaccgtcccc cactccttgc agctcgggca ctgccagtgg tggctgcgcg
      181 cgccgaagcc gcagcggctg cagcggtagc tgggattgcg caccagcagc tggtcggtga
      241 tgtgcttgag gtcggtgagc gtcgcggtcg cgtccgcgcc ttccgcgagc gtgaggtcga
      301 tcagcgccgc ctcgccgcgc accgaggggc ggtccttgag ctgctgcgcg aggtaggcgc
      361 gcgcggtgcc gacgccctcc tccgcttcca ccagccgggt cagcgcgagc accggcgaga
      421 tgccgcggta gtgctcgctc atctcggcga ggaaggcgcg cgcacccggc gtgtcgccga
      481 cgcggtcgta gcaggcgagc aaccccggca ggatttccgg caggtagtcc ggatcatggc
      541 gggcggcccg ctcgaaggcg cggatcgcgg cggcgtcgtt gcccgtctcg acctcgatcc
      601 gtccttccag cattcccgcg cgcaccgacg tcgaatcggc ggcgtaggcg cgtgcgatcg
      661 cctcgcgcgc cccatcgatc tccccgccgg cacgctggcg gtcggccagc tcgcattcga
      721 actgcgcgat cagccggccc atcggttcgc cggtcaccgc ctcgtagcgg gtcgcgttct
      781 cgatcgcctt ggcccattcg cgctcggcct ggtagatgcc gatcaggtgc ttgagcgcct
      841 gcggcgcgcg ctggtcgatc ttggcgaggt cgctgaacac cgtttcggcg cggtccagca
      901 ggcccgagcg catgtagtcc tcgccgagcg cgagcagcgc ctgcaccttc tgcgggtcgc
      961 tgaggtcgcg ccgctcgacc agcgcctggt gcaggcggat cgcgcggtcg acttccccgc
     1021 ggcggcggaa caggtggccg agcgcgacct gggtctcgaa ggtttccttg tcgagttcgg
     1081 cgatgtgcag gaacagctcg atcgccttgt cgggctgttc gttgagcagg tagttgaggc
     1141 cgcggaaata ggtggtcgac agcttgctga cctggctgtc gctgtggcgc tcgccgccgc
     1201 gccggccgat cacccagccg ctcagcgcgg cgagcggcag cagcaggaag aaccagaacc
     1261 actggttgag gaaggcggtc atcgcgtgga cgcctccgcc gggccgcgcc aggcggcatc
     1321 gggggacgtg gcgtgcggga gtcggctcgg gcgcatcttc ggctccggtt gcgccggcca
     1381 gcttagccga tgccgacggg aaatcccgcc cggtcgagcg ggcggcgcgg tcagtcctcg
     1441 accgcgacgg gcgtggcgtg gctgacgcgc tcgcgcagct ccttgcccgg cttgaagtgg
     1501 ggaacgtgct tgcccggcaa cgcgaccgcc tcacccgtct tcgggttgcg gcccgtgcgc
     1561 ggcgggcggt aatgcaggga gaaactgccg aatccgcgga tctcgatgcg gtcgccctcg
     1621 gcgagcgcgc cgcccatcat ttccagcagg gccttcaccg cgaggtcgac gtcgtcggcc
     1681 ttcaggtgcg cctggcgctg ggtgaggatc tcgatcagtt cggacttggt catcgcctgt
     1741 ccctggacgt gcgtgtcgcc ggcaggacga cggcccggca tgcgccgggc cgtcgcctgt
     1801 gtcgctcgat gttgcgtgtc ttgaagccgg cttactcgga cttgctgttg agctgctcgc
     1861 gcagcagcgc gccgagcttg gtggtgccgc tggaggcatc cgaggtggcc ttgttgtact
     1921 cggccagcgc ttcctgggtg tcggcttcgt ccttggcctt gatcgagagc tgcatgacgc
     1981 ggctcttgcg atcggtgccg atgatcttgg cttcgacctc ttcgccgacc ttcagcacgt
     2041 gcgaggcgtc gtccacgcgg tcacgcgaga tgtcgcgggc ggcgatgtag ccctcgacac
     2101 cgccgtcgag ttcgacggtg gcgcccttgg cgtcgacttc cttgatcttg cccttgacga
     2161 tcgaaccacg cgcgttggac gcgacgtagg tccccatcgg atcctgctcg agctgcttga
     2221 cgccgaggct gatgcgctcg cgctccggat cgacggccag caccaccgct tccagcgtgt
     2281 cgcccttctt gtagttgcgg gcgatgtcct cgccggtcga gttccagctg atgtccgaca
     2341 ggtggatcag gccgtcgatg ccgccgtcca ggccgatgaa gatgccgaag tcggtgatcg
     2401 acttgatctg gcccgacacc ttgtcgttct tcttgtggat cgcggcgaag gtctcccacg
     2461 ggttgctggt gacctgcttg atgccgagcg agatgcggcg acgctcctcg tcgacgtcca
     2521 gcaccatgac ctcgacctcg tcgccgacct gcacgacctt cgacgggttg acgttcttgt
     2581 tggtccagtc catctcggac acgtggacca ggccctcgac gcccggctcg atctcgacga
     2641 acgcgccgta gtcggtgacg ttggagacct tgccgaacac gcgggtgttg gccgggtagc
     2701 ggcgggcgat gttgtcccac ggatcctcgc ccagctgctt caggccgagg ctgacgcggt
     2761 tgcgctcgcg gtcgtacttc agcacgcgga cgtccagctc ctggccgact tcgaccactt
     2821 cggacggatg gcgcacgcgc ttccaggcca tgtcggtgat gtgcagcagg ccgtcgatgc
     2881 cgccgaggtc cacgaacgcg ccgtagtcgg tgaggttctt gacgacgccc ttgagcaccg
     2941 cgccctcgac cagcttctcg agcagctgct cgcgctcttc cgaatgctcg ctctcgacca
     3001 ccgcacggcg ggagacgacg acattgttgc gcttgcggtc gagcttgatg agcttgaact
     3061 ccagctcctt gccttcgagg tacaccgggt cgcggaccgg gcgcacgtcg accagcgagc
     3121 ccggcaggaa cgcgcggacg tccttgatgt cgacggtgaa gccgcccttg accttgccgc
     3181 tgatgcggcc ggtgatggtc tcgttcttct cgagggcttc ctcgagctcg tcccacacca
     3241 tcgcgcgctt ggccttctcg cgcgacagca cggtttcgcc aaagccgttc tcgagcgagt
     3301 ccagcgccac cttgacggtg tcgccgatgc cgacgtcgat ctcgcccgcg tcgttgcgga
     3361 actgctcgat cggcacgatg ccttcggact tcaggccggc gttgatgacg accacgtccg
     3421 agcggacgtc gacgacggtg ccggtgacga tggcgccggg cttgagcttg gccaggtggg
     3481 cctggctctg ttcgaacagt tcggcgaagg attcggttgc agcaggagtc atgaaaaatc
     3541 tctggtggat acacaggccg tggccgccgc tcgctgcgga cgacgcatcg gcccacccgg
     3601 tgggttggca ggtcccggga aggacgcagc caggtggtgg atgaccgccg cgggactgcg
     3661 gcgggccggt cgcctgctac gcgcggtccg tgcccggcgg cgccggcagc aatgccagca
     3721 cgcgctcgac gaccgtggcg atcggcaggc cggtggtgtc gatgtggacg gcatcgggtg
     3781 ccggccgcag cggcgccacc gcgcggctgg cgtcgcgggc gtcgcgggcg aggatctctc
     3841 gcagcagacc ggccaatgta accgaaaccc ccttgtcctt caactgctta taacgccttt
     3901 ccgcacgctc ctccgcactg gcggtcagga acaccttatg gacggcgtcg gggaagatga
     3961 ccgtgcccat gtcgcggccg tccgcgacca gcccgggcgg ctggcggaag gcgcgctggc
     4021 ggtcgcgcag cgccgcccgg acctcgggga tcgcggcgat ggcggacgcg gcggcaccgg
     4081 cggtttcggt gcgcagctcg gtggtggcat ccacgtcgtt gaccagcacc cgcggctcgt
     4141 ccccggcctc gtcgatgaac cggaccccgg tatcgaaagc gcaccgcacc agggccgatg
     4201 cgtcggaaag atcgatgtcg gcccagccgg cggcgatgcc gaccgcgcgg tacagcgccc
     4261 ccgaatcgag gtaatgccag cccaggcgcc gggcgaccag gcggctgatg gtgcccttgc
     4321 cggagcccga ggggccgtcg agggtgagca cggggacggc gggatcggtc atgggctggc
     4381 ccggacggaa accggggatt ctatcgggcg ccgccgcgaa ggctcggcgg ggcccggcgg
     4441 cgccatcgca accgcttgaa cgcatgggaa aaagcccgct acaatgcgcg gcttcgtgtt
     4501 tccacccttt tctgttagcc gaggttccgt catgaaggtg ctgtcctccc tgaagtcggc
     4561 gaaggcccgt caccgcgact gcaaggtggt ccgccgtcgt ggcaaggtct tcgtgatctg
     4621 caagtcgaac ccgcgtttca aggcgcgcca gcgctgagga cgccacgcgg cagcggcgcc
     4681 cggtgcgcgc tgcccgtccg acctgccgga ggccgccgcg aggcggcctt cgccgtttcc
     4741 gggcgtgtcg aacggcgaag cggctggaat cggccggcgg ccttgtgcat acaatcgggc
     4801 gaccaaccgg gagccctgcc atgaagctgc gccacaccgt cctgctgctc gccctgtccg
     4861 gcttcgccgc caccgcgtcg gccgagacgc tgctggtgca gcgcgtccag caggagaacg
     4921 ccgccgcgat gccccggcgc gggatgagca tggccgaggt ccaggcccgc ttcggcgcgc
     4981 cggccgaacg gctcgatccg cgcggcgggc agaagcgcgc gtggccgacc atcaaccgct
     5041 ggacctaccc cgccttcacc gtctacttcg agaaggaccg ggtggtggac gcggtggcca
     5101 acaaggccga tgcggacgaa atcgggccga agccgccggt gcgctgagga gcgccgcccg
     5161 gccctacgca cgggcggggc ctgcagcaac ggttccaggc acgcggcggg ctagaatgcc
     5221 cgccgttttt cgtttccggc ccgatgatgt ccgacaccgc gcttcgcctt cccgccgaat
     5281 gggaaccgca atccgccgtc ctcgtcgcct ggccgcatgc cggcaccgac tgggccgggc
     5341 gactggggga agtcgaggag acctacgtcg cgctggtcgc cgcgatcacc cgtttcgagg
     5401 acgtcgtcat cgtcgtcgcg gacgacgacc tgcagaccta cgcggaggcg cgcctgcgct
     5461 ccaaccgcgt cgacatggag cgcgtgcgct tcgtgcaggc gccgtacgac gacacctggc
     5521 tgcgcgattc cgggccgctg acgctgcgcg gcgccgatgg cttccgcctg ctcgatttcc
     5581 gcttcaccgg ctggggcggg aagttcgagg cgagcctcga cgaccagctg gtcgaacgcc
     5641 tcgcggaagc tggaattttc cataacgatt cacgtcaggt ggttgatttt gcattggaag
     5701 gcggagccat cgacaccgac ggcgcgggca ccctcctgag cacctggcag tgcctggccg
     5761 agcgccatcc ggacgccggc cgcgaggaga tcggcgcccg gctcgccggc tggctgcagc
     5821 aggaccgggt gctgtggctg gaccacggct acctcgaagg cgacgacacc gatgcccaca
     5881 tcgataccct cgcccgcttc gccggcgagg acgcgatcgt gttccaggcc tgcgacgatc
     5941 cggccgactc gcattacgcc gagctgcagg cgatggccgc cgaactggcc gcgttgcgca
     6001 cgcgcgacgg cgcgccgtac cggctgttcc cgttgccgtg gccgcgtccc atcctggacg
     6061 agggccgccg cctcgccgcg tcctacgcca acttcctgat cgtcaacggc ggcgtgctga
     6121 tgccggccta tggcgatccg gcggacgcgc gggccgcggc ggtgcttgaa aaggcctttc
     6181 ccggccgcga aatcgtgcag gtgccatgca ggccgctgat ctggcagaac ggcagcctgc
     6241 attgcctcac catgcagttg ccggcgggat tgctggcctg acctgccgcg caagcgggca
     6301 ggcagcacac cccacgcagc gacgatccgg cgctgccatc cgagcccatt ccaagatgac
     6361 gaaagccacc cttcccgtcg ccctcgtcca ggaacgcaac cacggcagcg ccgacgccaa
     6421 cctggcgttg atcgaacagc gcgtcggcga agccgcggcg tccggagcgc ggctcgtgct
     6481 gttgcaggaa ctgcacaacg gcgcctactt ctgccagcac cagaacgtgt gcgagttcgc
     6541 gcaggcggaa gccattcccg gcccgagcac cgaacgcctc ggcgcgctgg cgaaaaagca
     6601 cggggtggtc atcgtgtcgt cgctgttcga acggcgcggt accggcctgt accacaacac
     6661 cgcggtggtg ctcgagcgcg acggctcgat cgccggcaag taccgcaaga tgcacatccc
     6721 ggacgatccg ggcttcaacg agaagttcta cttcaccccg ggcgacctcg gtttccatcc
     6781 gatcgacacc tcggtcggcc ggctcggcgt gctggtgtgc tgggaccagt ggtatccgga
     6841 ggcggcgcgg ctgatggccc tggccggcgc cgacctgctg ctgtatccga ccgcgatcgg
     6901 ctgggatccc gatgacgacg cggccgagaa ggaacgccag cgcgatgcct ggatcctcag
     6961 ccaccgcggc cacgcggtcg ccaacggcct gccggtgctg tcgtgcaacc gggtcggcca
     7021 cgagccgtcc ccgatcgggc gctccggcat cgatttctgg ggcaccagcc acgtgctcgg
     7081 gccgcagggc gaattcctgg ccagggccgg cgaacagccg gaactgctgc tggccgaggt
     7141 cgacctgcgc cgcagcgagg acgtgcgccg gatctggccg ttcctgcgcg accgccgcat
     7201 cgacgcctac ggcgacctgc tgcggcgcta ccgcgactag cgtcgaaggc gggcgcgcct
     7261 cctcgccccg cccgagggtg gcgacctgcg tcccgccgcg cgcttacagc agccgcggct
     7321 gccccggtgg ataccgcagc acgccatcga ccatgcgcgc gtccggattg agcggatgcg
     7381 gctcgatccg gccggcggtc aggatgtgca gcacctgcca gccgcgcgcg gtgaagtcgt
     7441 cggcgatcag ccggcgatgg cagcgccacc acaccgcttc cgcgcacatc accgcgcagc
     7501 gttccccgcg cgcgcgcgtc atcagccgtt cgcgcgcctg cacgaacccg tcgctcgcca
     7561 tgtggtcggc gtagccgcgg aaggcctcca cgcgccaggc accgttcggc gaatcgggaa
     7621 gcggcttccg gcggcccccg aactccgcca tcggctcgta gccgatcccc gcctcgccca
     7681 gcgccggcgc catcgccagc ggcgaatact ggggattgcg ccgcgatccg gcgaaacggc
     7741 gcacgtcgac cacgcgcgcg atgcccgcct cgcgcagcag cgcgacgaac tcctcccacg
     7801 cccgggtcga atgcccgatc gtccacagcg tgccggcaaa cgcatgcatg ccgcgatggt
     7861 gaagtccggc ggatgaagcc gccttgacga gcgcgcggct aggctggccc acccgcatgg
     7921 cccgagccgc catcgtcatg accgaaccca gcagcggcct cgcccgcacc gcccagatcc
     7981 tgcgcttcct gctcaagtac cgcagcgccg gcgtgttcac cgggctggac ctcgacgcgg
     8041 tggatcccga gcacgcgccg ccaccggcca ccgagggcag gcccggggaa ttcgtcgacg
     8101 acctcgaggc gctgggcccc gccttcgtca agatcgggca ggcgctgtcg acgcgcccgg
     8161 acatggtgcc gcccgcctac ctcgccgcgc tcgagcgcat gcaggacgaa gtcgcgccga
     8221 ttcccgccga cgtgatccgc gcggtggtcg aggacgaact cggcgtgcgc atcagcaagg
     8281 cgttcgcgaa cttcgaagac ctgccgatcg gttgcgcctc gctcgcgcag gtgcaccggg
     8341 cgacgctgcg cagcggccgc gcggtggcgg tgaaggtgca gcgccccggc gtcgccgaat
     8401 cgatccgcac cgacctcgac gcgctggcca gcctcgccgg ccgcgccgac cgcatgaccg
     8461 acctcggccg gcgcgtgcac ttcgccgact gggtgcacga gttccgcaag gccctgctcg
     8521 ccgagctcga ctacacctcc gaagccgaga acctggtgcg cttcgcctcg cacttccgcg
     8581 actatcccga gctctacgtg ccggcgccgg tgtgggacta cacccgcagc cgcgtgctga
     8641 ccatggacct ggtcaccggg accaaggtga ccgagctgtc gggactgcgc cgcaccgagc
     8701 agaagctcga ccggctggcg tcggcgctga tgcgcggcta cctcgaccag gtgttcgtgt
     8761 acggcgagat ccatgccgat ccgcacccgg gcaacctgct cgtcaccgac gacggccggc
     8821 tcgcgctgtt cgacctcggc atggtcgcgc acgtgccgcc caagcagcgc gagcggctgc
     8881 tcaagctgct gttcgccgcg gtcgacggcc gcggcgagga agtcgccaac gaggcgatcg
     8941 acctcggcac gcggctggag gacttcgatg ccgaacgctt cgtccgcgag atcggccaca
     9001 tggtcgcgcg ctacgccgcg cacaccggcc agcagggacg ctccgaaggc cggctgatgc
     9061 tggagctggt gcgcctggcc accgcctgcg gcctgcgcac gccgccggag ctcagcctgc
     9121 tgggcaagac cctgctcaac ctgcagcagg tggccgcgct gctggacccc gacatcgaca
     9181 tgaaatgcgt cgtcgaggac cacctggagc acgtcatgcg ccagcggctg cgccgctcgc
     9241 tgtcctcctc gaacatggcc ggcgaactca tcgaggtgca ggcgctgatg cgcgaggcgc
     9301 cgcgcaaggt gtccgacctg ctctcgctgc tgtcggaaaa ccgcctgcag gtgcgcatga
     9361 ccggcttcgg cgagctgatg gagagcctgc agaagatcgc caaccgcatc gccgccgggc
     9421 tggtcaccgc cgcattgatg ctggcctcgg cgctgatgat gcggatcgaa tccaggcaca
     9481 cgctgttcgg ctatccggcg atcgcgctgc tgctgttcct gctcggcagc gggctcggca
     9541 tcgccatcgt gctgagcgca ctgctcggcg accgcaaggc cgcgccgcac gaggagcgcg
     9601 ggccgcgttg agcgcgcgcc tccgagggcc caggctgccg cgacctgcgt gcggccgcac
     9661 actgacctgc ccgtggccgc cggtgcgttg tagcgaccag gccccttgcg ttcgccggag
     9721 aaaccgatgg tgcccggccg accacgcaag ccccctgccc gcgtcgacag gtgttcgcga
     9781 tgaagcgcgc ccgcgcgcag cgcctgtggc gcgacctgcg gcgccggcgc atgttcggcg
     9841 cggtcgcgtt ctacgtggtc gcggcctggg ccttcgtgca ggccgcctcg atcgcctttc
     9901 ccgccttcgg catgcccgag tggacgctgc gcgcggtgct ggtggcggcc ttcgccggct
     9961 tcccggtcgc ggtggtgctg gcatgggtgt tcgatttttc cgcgcgcggc ggcctgcgcg
    10021 tcaccgtgcc cgaggaaggc aagtacccgc aggggcggcg gccgccgcgc tggtggctgc
    10081 gtcccctgct ggcggcgccg ctgctcgcgc tcatcgtcgg cggcaccgta tggctgtgga
    10141 gttcgcgcct cgcccacacc ggcgacagcg agttcacccg ccaggcgcgg cccgacgagc
    10201 tgccggtcgt cgcggtgctg ccgctggaca acctcaccgg ccgccgcgac ctggactgga
    10261 ccagcgccgg catcgcgacg ctggtgcgcg acgagctgtc gcagtccagg ctcatcgccg
    10321 tcgtctccgc ggcacgcacc atccgcctgc tcgccggcgc gaaggatccg caggcgctgc
    10381 tcgcgcaggc cgccgacgcc ggcatcaccc acgtgctcag cggcgaggtg ctgcgcacgc
    10441 cgaaaggcct gaccgtgacc tcgcgcctga ccgacctgcg gcgcaacgtc gagctcggcg
    10501 ccaaccgcca ggaaggcctg acgacggacc aggcgctctc ggcggccagc accatcgcct
    10561 cggtggtgcg gcagggcctc gggctgcccg gcaccgagca catcgacgtg ttcgccgccg
    10621 acttcgccgc gcgcaatccc gccgcctacg aagccttcat cgccgggatg cagaacttcc
    10681 tgcgcttcga ctacgccggc gcgcgcaccg gcttcgaggc cgccgtgcaa cgcgcacccg
    10741 acttcgccat ggcgcgctac cgcctggcgc acacgctcgc cgcgctcggc gacaccgcgg
    10801 gcgcgctcag gcaggtcgag gccgcgcgcc gcgatgcggc ccggctgccc gagcgcgacc
    10861 gcgactacat cgccgccggc gaagcctatt tccgccgcga ctaccccgct gcggaggcgc
    10921 gctaccgcgc cgtgctcgcg cagcatccct acgaatcgga agcgcgcgtg ctgctgatgt
    10981 acgtgctgat cgacgaggac cgctcggcgg acgccctggc ggaagccgaa acgctggtgc
    11041 agcaggaccc cggcgacgag gtcggctgga gcgcggtggc cgaccagagc ctgcgcctgg
    11101 gccactacgc gcgcgccgac gaggccatcg cgcgcctgct gcagatcgcc ccggacaacc
    11161 cgaacgcgca ctacctcgcg ggcgaatcgg cgttcctgcg cggccagctc gagcgggcgg
    11221 acgcgcgcta ccgcgaggcg ctggaacacg acccggcctt cggcgacgcc cgcctgcggc
    11281 tggcgcgcat cgacgtgctg cgcaaccagc cgcaggcggc gatcgcgggc ctgcagtcga
    11341 tgctcggcgg ccgcttcgcg ccctcgctgc gcatcagcgc cgccttcgac ctcgccgacc
    11401 tgctgcgcgc ctcgggccgt tgcgacgagg cattgcatgc gctggaccag gcccatgccg
    11461 acatcgcggc ggaacaggtc cgcgccgcgc tggaactggc gacccgcgca cgctgcgcgc
    11521 tcgatgccgg cgaca
//
LOCUS       DATIQC010000264         3437 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_512030, whole genome shotgun sequence.
ACCESSION   DATIQC010000264 DATIQC010000000
VERSION     DATIQC010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512030"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VLM17_05580"
     CDS             complement(<1..705)
                     /locus_tag="VLM17_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017115654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HSR65060.1"
                     /translation="MSGSLFAAARACLDAASPADKVAATERAAAAFARGGLHPGEDTP
                     PQPVRMPGRPPHPRLVPPRDLPRRGFGTPEGRAAFIHAVAHIEFNAIDLAWDAVYRFR
                     GMPDAYYADWVGVAADEARHFTLLCARLREFGHDYGDFDAHNGLWEMAEKTAHDALAR
                     MALVPRVLEARGLDVTPGMIAKLRGLGDDATADILEVILREEVAHVAAGSRWYRWLCE
                     RGGIEPLERFRSLLAEY"
     gene            complement(731..2203)
                     /gene="purF"
                     /locus_tag="VLM17_05585"
     CDS             complement(731..2203)
                     /gene="purF"
                     /locus_tag="VLM17_05585"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HSR65061.1"
                     /translation="MCGIIGIVATQDVAGALYDGLTVLQHRGQDAAGIATADGGHIHQ
                     QKGNGLVRDVFDEDAMRLLRGRVGVAHCRYPTAGSEGSAEAQPFYVNSPYGIALVHNG
                     NLINTETLRREVFEQDRRNVNTESDSEVLLNVFAHELDTQKALTPDAAFRAIEGVNRR
                     ARGGYAVITTVLGLGLVAFRDRNGIRPLVLGKRSTANGDEYAVASESVALDILGFERL
                     RDVAPGEGVVVTARGELFTRQCAEPAQHAPCIFEYVYFARPDSMIEDISVHKARMRMG
                     QKLGEKILRLRPDHDIDVVIPIPDTSRDAALEIANVLGVKYREGFIKNRYVGRTFIMP
                     GQGERAKSVKRKLNPIPLEFRGRVVLLVDDSIVRGTTSKQIVQMARDAGASKVYLASA
                     APPVRFPNVYGIDMPSAEELVAHGRSEEEVQQILGCDWLIYQDLADLEDAVSGPKHKV
                     TRFDSSCFNGEYVTGIEPGYFDRIKQLRSDEAKKTRRAAS"
     gene            complement(2207..2773)
                     /locus_tag="VLM17_05590"
     CDS             complement(2207..2773)
                     /locus_tag="VLM17_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HSR65062.1"
                     /translation="MNATDLLLLGVILVSTLLGLLRGFVGAVVSLLAWLLAGWAAFHF
                     GAKLALLLAGSDAPGAGVLLAGYGLCFLGVLVVVGVAGWLVRKLVKAAGLSGADRALG
                     GALGFARGGFVACVLVLLLGFTALPREPGWQQSRVVPVLLPGAQWLRGWLPGWAAQRV
                     DFTGDGPHSIELGGASAPPPAGAQAPGI"
     gene            complement(2777..>3437)
                     /locus_tag="VLM17_05595"
     CDS             complement(2777..>3437)
                     /locus_tag="VLM17_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017113524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSR65063.1"
                     /translation="TAGGDYAVSFGAYAGIAAADAVIASLKSAQLPAYREPTTSAGKP
                     AWRVRIGPFATRAEAESARLRAAHVRDDVGAQVVVLDAAPATSAVVDTVATAPARPAA
                     PTPRPMPTTAKGPAVVAAPATTKPDTRTTVAAPKPPAAAATGFAVQLAAFGNAAQATA
                     LRDRLRAAGFSAFTETVTTDKGALTRVRVGPVASRGDAEQLQAQVKAKLGLDGIVRPH
                     P"
BASE COUNT          491 a         1206 c         1262 g          478 t
ORIGIN      
        1 gtactcggcg aggaggctgc ggaaccgttc gagcggctcg atgcccccac gctcgcacag
       61 ccagcgatac cagcgcgaac cggcggcgac gtgggcgact tcctcgcgca ggatcacctc
      121 gaggatgtcg gctgtcgcgt cgtccccgag cccgcgcagc ttcgcgatca tgcccggcgt
      181 cacgtcgagc ccgcgcgcct ccagcacgcg cggcaccagc gccatgcgcg ccagcgcgtc
      241 gtgcgcggtc ttctccgcca tctcccacag gccgttgtgg gcgtcgaagt cgccgtagtc
      301 gtggccgaac tcccgcaggc gcgcgcacag cagggtgaaa tggcgcgcct cgtcggcggc
      361 gacgccgacc cagtcggcgt agtaggcatc gggcatgcca cggaagcggt agaccgcgtc
      421 ccaggccagg tcgatcgcgt tgaactcgat gtgggcgacc gcatggatga aggccgcgcg
      481 tccttcgggc gtgccgaaac cgcgacgtgg caggtcgcgc ggcggcacca ggcgcggatg
      541 cggcgggcgt ccgggcatgc ggacgggttg cggcggcgtg tcctcaccag gatgcagccc
      601 gccgcgcgcg aacgcggcgg ccgcacgttc cgtggcggcg accttgtccg ccggggacgc
      661 ggcatcgagg caggcgcggg cggcggcgaa cagcgatccg ctcatggatt ccggcccggg
      721 gcgcggcgtt tcaggacgcg gcgcgccgcg tcttcttcgc ctcgtccgag cgcagctgct
      781 tgatgcggtc gaagtaaccg ggctcgatgc cggtgacgta ctcgccgttg aagcaggacg
      841 agtcgaaacg ggtcaccttg tgcttcgggc cggagaccgc gtcctccagg tcggcgaggt
      901 cctggtagat cagccagtcg cagccgagga tctgctgcac ttcctcctcg ctgcggccgt
      961 gcgccaccag ttcctcggcc gacggcatgt cgatgccgta cacgttgggg aagcgcaccg
     1021 gcggcgcggc ggaggcgagg tagaccttgc tcgcgccggc gtcgcgcgcc atctgcacga
     1081 tctgtttcga ggtggtgccg cgcacgatcg agtcgtccac cagcagcacg acgcggccgc
     1141 ggaattccag cgggatcggg ttgagcttgc gcttgaccga cttcgcgcgc tcgccctgcc
     1201 ccggcatgat gaacgtccgg ccgacgtagc ggttcttgat gaagccctcg cggtacttca
     1261 cgccgagcac gttggcgatc tcgagcgcgg catcgcgcga cgtgtccggg atcgggatga
     1321 cgacgtcgat gtcgtggtcc gggcgcaggc gcaggatctt ctcgccgagc ttctggccca
     1381 tgcgcatgcg cgccttgtgc accgagatgt cctcgatcat cgaatcggga cgggcgaagt
     1441 agacgtattc gaagatgcac ggcgcgtgct gcgccggctc cgcgcactgg cgggtgaaca
     1501 gctcgccccg cgcggtcacg acgacgccct cgcccggcgc gacgtcgcgc aggcgctcga
     1561 agccgaggat gtcgagggcg accgattcgg acgcgaccgc gtattcgtcg ccattcgccg
     1621 tgctgcgctt gccgagcacc agcggacgga tgccgttgcg gtcgcggaac gcgaccaggc
     1681 cgaggccgag caccgtggtg atcaccgcat agccgcctcg cgcgcggcgg ttgacgcctt
     1741 cgatcgcccg gaacgcggca tcgggggtca acgccttctg cgtgtcgagc tcgtgcgcga
     1801 acacgttcag cagcacttcc gaatcggact cggtgttgac gttgcggcgg tcctgctcga
     1861 agacctcgcg acgcagcgtc tcggtgttga tcaggttgcc gttgtgcacc agcgcgatgc
     1921 cgtagggcga attgacgtag aacggctgcg cctcggccga gccttcggag cccgccgtcg
     1981 gatagcggca gtgggcgacg ccgacgcggc cgcgcagcag gcgcatggcg tcctcgtcga
     2041 acacgtcgcg caccaggccg ttgcccttct gctggtggat gtgcccgccg tcagcggtgg
     2101 cgatgcccgc ggcgtcctgg ccgcggtgct ggagcacggt caggccgtcg tagagcgcgc
     2161 ccgcgacgtc ctgggtggcg acgatgccga tgatgccgca catggttcag atccccggcg
     2221 cctgcgcgcc cgctgggggc ggcgccgaag cgccgccaag ttcaatggaa tgcggtccgt
     2281 cgcccgtgaa atcaacccgt tgcgccgccc agccgggcag ccagccacgc agccactgcg
     2341 cgccgggcag gagcaccggc accacgcgcg actgctgcca gccgggttcg cgcggcagcg
     2401 cggtgaagcc cagcagcaac accagcacgc aggcgacgaa gccgccgcgc gcgaagccga
     2461 gcgcgccgcc gagcgcgcgg tcggcgccgg acagcccggc cgccttcacc agcttgcgga
     2521 ccagccagcc ggccacgcct accaccacca gcacaccgag gaaacacagt ccgtaaccgg
     2581 ccagcagcac gcctgcgccg ggcgcgtcgc tgccggcaag cagcagcgcg agcttcgcgc
     2641 cgaaatggaa cgccgcccag ccggccagca gccaggccag cagcgacacg accgcgccga
     2701 cgaagccgcg cagcaacccg agcagggtcg acacgaggat gacgccgagc agcagcaggt
     2761 cggtcgcgtt catgccttac ggatgcgggc ggacgatgcc gtcgaggccg agcttggcct
     2821 tgacctgcgc ctgcagctgt tcggcatcgc cccggctggc gaccgggccg acccgcacgc
     2881 gggtcagcgc gcccttgtcg gtggtgacgg tttcggtaaa ggcgctgaag ccggcggcgc
     2941 gcaggcggtc gcgcagcgcg gtggcctggg cggcattgcc gaaggccgcc agttgcacgg
     3001 cgaacccggt ggcggcggca gccggcggtt tcggcgcggc gaccgtcgtc cgggtgtcgg
     3061 gtttcgtcgt cgcgggcgct gccacgacgg cggggccctt cgctgtcgtc ggcatcggcc
     3121 tgggtgtcgg cgcggccggc cgggcgggcg cggtggcgac ggtgtccacc actgcggacg
     3181 tcgcgggcgc cgcatcgagc accaccacct gggcgccgac atcgtcgcgc acgtgcgccg
     3241 cgcgcaggcg tgccgactcg gcctccgcac gggtggcgaa gggaccgatg cgcacgcgcc
     3301 aggcgggctt gcccgcggac gtggtcggct cgcggtaagc cggcagttgc gcgctcttga
     3361 gcgaggcgat caccgcatcg gcggcggcga tgccggcgta ggcgccgaag ctgaccgcgt
     3421 agtcgccacc ggccgtg
//
LOCUS       DATIQC010000265         3164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_158665, whole genome shotgun sequence.
ACCESSION   DATIQC010000265 DATIQC010000000
VERSION     DATIQC010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158665"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(341..2110)
                     /locus_tag="VLM17_05600"
     CDS             complement(341..2110)
                     /locus_tag="VLM17_05600"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR65064.1"
                     /translation="MARGRMLTLMLAVALSGGSWAARAGTLDQMLAHAEAVRSTDPKA
                     FAAALDDIDRARSRATPSQLRQLRLLRAYQKVVTGHYDDAIREAQAIYEESGEPPLRF
                     RAALLVANGAAITRDFSLGMRYLENALALQDQVGDRDLRHLGFVVAAILYNQYGQFAL
                     GQHYAQQVLDQPTSPRNHCIAQQLRVEALFGQNAALEDDDLTTAIAECDAQKEPIASN
                     LIRGYLARHWVAQRRSAEAIRVLESHLAEVEATGYPRLIGEIHGLLAEYRLNAGDTAG
                     AEQDARSALTKGEKDAYSLPLVTAHKVLYEVALRRGDLPAALGEYRAYAEADKARLDE
                     IKAREYAFQLSRNELQQKNQAIQLLSKQNEVLRLQQEVTRTSAQNSQLLIGLLGFVLV
                     TVGYWAFKIKRVQMRFRHLAQTDALTGICNRAHLRQQAEVALTQCSARGRPVGMLVFD
                     LDNFKTINDRHGHASGDWVLERVSRAIGGACREGDLFGRLGGEEFGLVLPDRDIAATE
                     RMAEDCRAALAAIDTVEMGERFTVTASFGCVDTDFAGYDYERLLALADEAMYSAKHGG
                     RDCVRRYGDAPVRTRKPPVLVTA"
     gene            complement(2186..2461)
                     /locus_tag="VLM17_05605"
     CDS             complement(2186..2461)
                     /locus_tag="VLM17_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65065.1"
                     /translation="MSNVVQFLETLACTPGTLSADAFASALASAGLTPEARAALSGKD
                     AEALNAVLGGRSTVLCFVAPAEDDEPVEDEPQGDEPDSPERDASRAA"
     gene            complement(2494..>3164)
                     /locus_tag="VLM17_05610"
     CDS             complement(2494..>3164)
                     /locus_tag="VLM17_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008438332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HSR65066.1"
                     /translation="VRSLQPCYAEGKSRHATYREMVGAMLVEVRAGRRVCGAFYGHPG
                     VFAKVPHDAIAQARAEGFAASMEPGVSAEDCLYADLGIDPGRVGCQHYEASQLLFYRR
                     VLDPSAYLVLWQVGIAGDRTYRRFATSPAHRQLLVDRLLETYPGDHPVTVYEAATLPI
                     AAPRMDTVALRELAATPLHMQSTLVVPPCLALQRDEAMLARIEALEAAAVRPELRIPA
                     LQPA"
BASE COUNT          441 a         1065 c         1158 g          500 t
ORIGIN      
        1 tggtacgacg cattcggcgc caaggcgggc cagaagctgt acctgtagcc ggaggatcgc
       61 gtgcgcatct ggtgaccagc gcgcgattgc cggaaggaaa tcgcccgcaa tagcgggcgt
      121 tttccttttg gcgccagctc agggcgaacg gctttcgatg cggccgagca actcaagctc
      181 ggcgcgcact tgggtggttc catttgcacg aaacgccgtt cgtggtgagc ctgtcgaacc
      241 ttgaacggct gcgtggggtg ccgttcgccc ttcgacaggc tcggggcgaa cggctccctg
      301 gcgttgcgca gcctagccga cccggaaggg aactaccggg tcaggcggtc accagcaccg
      361 gcggcttgcg cgtgcgcacc ggcgcgtcgc cgtagcgacg cacgcaatcg cggccgccgt
      421 gcttggccga gtacatcgcc tcgtccgcca gcgcgagcag gcgctcgtag tcgtagccgg
      481 cgaagtcggt gtcgacgcag ccgaagctgg cggtcacggt gaagcgctcg cccatctcga
      541 cggtgtcgat cgccgccagc gccgcgcggc aatcctcggc catgcgctcg gtggcggcga
      601 tgtcgcggtc gggcagcacc aggccgaact cctcgccgcc gagccggccg aacaggtcgc
      661 cctcgcggca cgcgccgccg atcgcgcgag acacccgttc cagcacccag tcgccgctgg
      721 cgtggccgtg gcggtcgttg atcgtcttga agttgtcgag gtcgaacacc agcatgccca
      781 ccggcctgcc gcgcgcgctg cactgggtga gcgcgacctc cgcctgctgg cgcaggtggg
      841 cgcggttgca gatgccggtg agcgcgtcgg tctgcgccag gtgccggaag cgcatctgca
      901 cgcgcttgat cttgaacgcc cagtacccga ccgtcaccag cacgaagccg agcaggccga
      961 tcagcagctg cgagttctgc gccgacgtcc gcgtcacttc ctgctgcagc cgcagcacct
     1021 cgttctgctt gctcagcagc tggatcgcct ggttcttctg ctgcagctcg ttgcggctga
     1081 gctggaaggc gtattcgcgc gccttgatct cgtcgaggcg ggccttgtcg gcctcggcat
     1141 aggcgcggta ttcgcccagc gcggccggca ggtcgccgcg gcgcagcgcg acttcgtaga
     1201 gcaccttgtg cgcggtcacc agcggcagcg agtaggcgtc cttctcgccc ttggtgagcg
     1261 cgctgcgcgc gtcctgctcg gcgccggcgg tgtcgcccgc gttgagccgg tactcggcca
     1321 gcaggccatg gatctcgccg atcaggcgcg gatagccggt cgcctcgact tccgcgaggt
     1381 ggctttcgag cacccggatc gcttccgccg accggcgctg cgcaacccag tgccgcgcga
     1441 ggtagccgcg gatcaggttc gacgcgatcg gttccttctg cgcgtcgcac tcggcaatcg
     1501 ccgtcgtcag gtcgtcgtct tcgagcgcgg cgttctggcc gaagagcgct tcgacgcgca
     1561 gctgctgggc gatgcaatgg ttgcgtggcg acgtcggctg gtccagcacc tgctgggcgt
     1621 agtgctggcc cagcgcgaat tgtccgtact ggttgtaaag gatggcggcc acgacgaagc
     1681 cgaggtgccg gagatcgcgg tcgccgacct ggtcctggag cgccagcgcg ttctcgaggt
     1741 aacgcatgcc gagggagaag tcgcgcgtga tggcggcgcc attggccacg aggagcgccg
     1801 cccggaaccg caatggcggt tcgccggact cttcgtagat ggcctgcgct tcccggatcg
     1861 cgtcgtcgta gtggccggtg acgaccttct ggtacgcccg cagcaggcgg agctggcgca
     1921 gctgggaagg cgtggcgcgg ctccttgcgc ggtcgatatc gtcgagcgcc gcggcgaacg
     1981 ccttgggatc cgtgctgcgc acggcctccg cgtgcgcgag catctggtcg agcgtccccg
     2041 cgcgggcagc ccaggatccg cccgacaggg cgaccgcgag catcagcgtc agcatccgtc
     2101 cccgtgccat ttcccctctc cttgaggcga tccgttttcc gggacaacgt ggcgaccgcc
     2161 cggcaaggcg gacgccaccg gtggctcagg cggcccgcga agcgtcccgc tccggcgagt
     2221 cgggctcgtc gccctgcggt tcgtcctcga cgggctcatc gtcttccgcg ggcgcgacga
     2281 aacacaggac ggtggaccgg ccgccgagca cggcattgag cgcttccgcg tccttccccg
     2341 acagggccgc gcgcgcctcg ggcgtcaggc cggcggaagc gagtgcgctg gcgaacgcgt
     2401 ccgcggacag cgtgccggga gtgcacgcca gggtttccag gaattgcacg acgttggaca
     2461 tcttcgactc cggcggatga ggaaggaaac gggttatgcg ggctgtagag cgggaatacg
     2521 caattcgggc cggacggcgg ccgcctccag cgcctcgatc cgcgccagca tcgcctcgtc
     2581 gcgctgcagg gccaggcacg gcgggaccac cagggtcgac tgcatgtgca gcggggtggc
     2641 ggcgagctcg cgcagggcga ccgtgtccat gcgcggcgcg gcgatcggca gggtcgcggc
     2701 ttcgtacacg gtgaccgggt ggtcgcccgg gtaggtctcg aggaggcggt cgaccagcag
     2761 ctggcggtgc gcggggctgg tcgcgaagcg ccggtaggtg cggtcgccgg cgatgccgac
     2821 ctgccacagc accaggtacg ccgacgggtc gagcacgcgg cggtagaaga gcagctggct
     2881 ggcttcgtag tgctggcagc cgacgcggcc ggggtcgatg ccgaggtcgg cgtacaggca
     2941 gtcctcggcg gacacgccgg gctccatcga tgcggcgaag ccttcggcgc gcgcctgcgc
     3001 gatggcgtcg tgcggcacct tggcgaacac gccgggatgg ccgtagaagg cgccgcagac
     3061 gcggcggccg gcgcgcacct cgacgagcat cgccccgacc atctcgcggt aggtcgcatg
     3121 gcgcgacttg ccttcggcgt agcagggctg gaggctgcgc acgt
//
LOCUS       DATIQC010000266         1573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_194617, whole genome shotgun sequence.
ACCESSION   DATIQC010000266 DATIQC010000000
VERSION     DATIQC010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194617"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(80..1255)
                     /gene="ftsY"
                     /locus_tag="VLM17_05615"
     CDS             complement(80..1255)
                     /gene="ftsY"
                     /locus_tag="VLM17_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HSR65067.1"
                     /translation="MVSFFRRKKPDPAAPATSQYSIEELAAAFPSAPAPAEPAPPEPV
                     AERADGGIGGIVAPAEPAVVEAPVPPAATAERPREEAPPAAPGRLGWRERLRGSGFAR
                     NLGGLFSRHPRLDDDLLDEIETALLTADVGVAATSQIIDDLRKRMKAREFADAGALLA
                     ALRADLVALLQPVAKPLAIDPAARPFVLLTVGVNGVGKTTTIGKLARRFRDEGRSLML
                     AAGDTFRAAAVAQLQAWGERNGVQVVAQGQNADPASVAFDALQAAKARGIEVLIADTA
                     GRLHTQQGLMAELGKIKRVLGKLDASAPHEVLMVIDGTTGQNALSQLRQFNAAVGVTG
                     LVVTKLDGTAKGGVVFALAREFGLPIRYVGLGEKREDLRIFDPEAFVDALLPAPPAA"
     gene            1313..>1573
                     /locus_tag="VLM17_05620"
     CDS             1313..>1573
                     /locus_tag="VLM17_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007970851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HSR65068.1"
                     /translation="MSARCPRGGGVVRIIGGDWRGTRLPVSDAPGLRPTSDRVRETLF
                     NWLQPKLSGARVLDLFAGSDALGLEALSRGAREAVLVERDPRL"
BASE COUNT          196 a          570 c          593 g          214 t
ORIGIN      
        1 cagactgcgc cgatgaccag caacgccgcc agcacgccga gcactttcgg ccagcgtcgg
       61 cggcgcggcg cggcttccat caggcggcgg gcggggccgg gagcagggcg tcgacgaagg
      121 cttcgggatc gaagatgcgc aggtcctcgc gcttctcgcc caggcccacg tagcggatcg
      181 gcaggccgaa ttcacgcgcc agcgcgaaca ccacgccgcc cttggcggtg ccatcgagct
      241 tggtgacgac caggccggtg accccgaccg cggcgttgaa ctggcgcagc tgcgacagcg
      301 cgttctgccc ggtggtgccg tcgatcacca tcagcacctc gtgcggcgcg ctcgcgtcga
      361 gcttgccgag cacgcgcttg atcttgccga gttcggccat cagcccctgc tgggtgtgca
      421 gccgcccggc ggtgtcggcg atcagcacct cgatgccgcg cgccttcgcc gcctgcagcg
      481 cgtcgaaggc aaccgacgcg ggatccgcgt tctgtccctg cgccaccacc tgcacgccgt
      541 tgcgctcgcc ccaggcctgc agctgcgcga ccgcggcggc gcggaaggtg tcgccggcgg
      601 cgagcatcag cgagcggccc tcgtccctga agcggcgcgc gagcttgccg atcgtcgtcg
      661 tcttgccgac gccgttgacg ccgacggtga gcagcacgaa gggccgggcc gccgggtcga
      721 tcgccagcgg cttggccacc ggctgcagca gcgcgacgag gtcggcgcgc aaggcggcga
      781 gcagcgcgcc ggcatcggcg aactcgcgcg ccttcatccg cttgcgcagg tcgtcgatga
      841 tctggctggt ggcggccacc ccgacgtcgg cggtgagcag cgcggtctcg atctcgtcga
      901 gcaggtcgtc gtccaggcgc gggtggcgcg agaacagtcc gccgaggttg cgcgcgaaac
      961 cgctgccgcg caggcgctcg cgccagccca ggcggccagg ggcggcgggc ggggcttcct
     1021 cgcgaggccg ctcggcggtc gcggcaggtg gcaccggtgc ttcgaccacg gcaggttccg
     1081 cgggggcgac gatgccgccg atgccgccgt cggcgcgctc ggcgaccggc tccggcgggg
     1141 ccggttcggc cggtgcgggc gcggagggaa acgccgccgc cagttcctcg atgctgtact
     1201 gcgaagtggc cggtgccgcc ggatcgggct tcttgcggcg gaagaaactc accatcgtcg
     1261 ggtcatcgcg cagaatggcg cgcatggtag cacccacccc aaggcggcct tcgtgagcgc
     1321 gcgctgtccg cgcggcggcg gcgtggtccg catcatcggc ggcgactggc gcggcacgcg
     1381 cctgcccgtg tccgatgcgc ccggcctgcg gccgacctcc gaccgcgtgc gcgaaacgct
     1441 cttcaactgg ctgcagccga agctgtcggg cgcgcgcgtg ctcgacctgt tcgccggcag
     1501 cgacgcgctc ggcctggagg cgctgtcgcg cggcgcgcgc gaggcggtgc tggtcgaacg
     1561 cgatccgcgc ctg
//
LOCUS       DATIQC010000267         4312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_653868, whole genome shotgun sequence.
ACCESSION   DATIQC010000267 DATIQC010000000
VERSION     DATIQC010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4312
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653868"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..423
                     /locus_tag="VLM17_05625"
     CDS             25..423
                     /locus_tag="VLM17_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HSR65069.1"
                     /translation="MFPINEQFAAASRQFVQTAAQVNRLALSHAEQVFALQLGAFEQS
                     VSAAFAHLGELAEVRDADGLRQVWPKGLQVARETAERAVSTGQEVLDRTVKAGEAIGQ
                     VARSQFEAATAQVQAGAEQVAKAAKAAKAK"
     gene            complement(534..3698)
                     /locus_tag="VLM17_05630"
     CDS             complement(534..3698)
                     /locus_tag="VLM17_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0042908 - xenobiotic transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HSR65070.1"
                     /translation="MSRYFINHPVFAWVIAIMIVLAGLLSIRSLGVESYPNIAPPQVG
                     VFASYPGASAETVERAVTQIIEQQLTGIDNLDYFSSSSGSDGSASVNLTFKPGTDPDT
                     AQMQVQNKVSQATPRLPTDVVQQGVVVQKANQGFLLVVAVTSDDPTFGRDQLSDLLAS
                     NVIDQVSRVPGVGNTQLFGGEYAMHVWLNPDKLHAYGLSASEVLAAVRAQNVQFSAGQ
                     VGGEPSPDTQMFTASVAAEGRFSTPQQFEQILLRTDPQGAAVRLKDVARIEVTGAAQG
                     FDLKWNGRPAAGFAVQLAPGENALAVAAAVKKRMAELEPSFPKGVHWFSPYDSSDFVR
                     ISVDEVVKTLVEAMVLVFLVMLLYLQNFRATLIPTLVIPVALLGTFLGMKVLGFTINQ
                     LSLFGMVLAIGIVVVDAIVVIENVERIMTEEGLSPKEATRKAMEQITAARTRVIAITL
                     VLAAVFIPSALQAGSAGAVYKQFALTIAMAMLFSAFLALGFTPALCANLLKPSVHHES
                     RNPVFRWFNRFYGRMSNIYVHHIGGAVRHAPRWMLVFGLLAALCAFLFWRMPGSFLPE
                     EDQGYALAVVQLPPGATLRRTDAVLEQVRDKVEHLEGYDGMFQVAGFSFIGQGENVGM
                     VFIKLKPWDERKITASDFIQQANGALFPIRDAQIFVVNLPTVNGLGQFGGFDMYLQDR
                     SGQGRDALMQAMGTLLGKAGEDKALVGVRPNTLEPAPQLKLDVDRVQAQAMGLSVGDI
                     YSAIQLMLAPVYVNDFVQGGRVKRVLMQADAVYRTGPESLAQFYTPSNTAPVPDASTP
                     SAVPPMIPLSNVVGAKWTVAPPSLTRYNGFAAVEVVGAQAPGHSSGEAMSAMQRIVDK
                     DLPAGFGYDWAGQSHQEILSGSQTTMLMVLSIVVVFLCLAALYESWSVPVSVLLVVPV
                     GVLGAVLLSMLRGLPNDIYFKIGLITVIGLAAKNAILIVEFAIQERQLGKPLGAAVVE
                     AAKLRLRPILMTSLAFIMGVLPLAISTGAGANARHAIGTGVIGGMLAATFLGLLFIPV
                     FYAIVRRLLGDKLDEAPDLAHHPH"
     gene            complement(3704..>4312)
                     /locus_tag="VLM17_05635"
     CDS             complement(3704..>4312)
                     /locus_tag="VLM17_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR65071.1"
                     /translation="VTEGALVGQGAATLLTTVDQIDPLYIDFSLSVAQLTSIRQRDNG
                     TSQREVQVVLPDGSVYRHAGTLDFAGNVVDPATGAVSLRARVPNPEHTLLPGTFVTLK
                     ATLGEEHGAFRVPQVALQRDGQGAYVLVVGNDGKVARKEVTTERQDGADWIVNGGLAN
                     GDRVIVSGLQRAQPGQPAKATPTPPEQAGKPAAPASAAARKG"
BASE COUNT          672 a         1516 c         1478 g          646 t
ORIGIN      
        1 cggtctgtcc agcaggtatc caccatgttc ccgatcaacg agcagttcgc cgcggcctcg
       61 cgccagttcg tgcagaccgc cgcccaggtc aaccgcctgg ccctgagcca cgccgaacag
      121 gtgttcgccc tgcagctcgg cgccttcgag cagagcgtct ccgccgcctt cgcccacctc
      181 ggcgagctgg ccgaggtccg cgacgccgat ggcctgcgcc aggtgtggcc gaagggtctg
      241 caggtcgccc gcgagaccgc cgagcgcgcg gtcagcaccg gccaggaagt cctcgaccgc
      301 acggtcaagg ccggcgaggc gatcggccag gtcgcgcgca gccagttcga ggccgccacc
      361 gcccaggtcc aggccggcgc cgagcaggtc gcgaaggccg ccaaggccgc caaggccaag
      421 taagcctgct cttacgaacg tttttcgaca ggccgagcga tcggcagcgg gtcctctctc
      481 ccccgcgtca ggaaacccgg cagcgaccct gccgggtttt ttttcgcctg cgctcagtgc
      541 gggtggtggg cgaggtccgg tgcctcgtcg agcttgtcgc cgagcaggcg gcgcacgatc
      601 gcgtagaaca ccgggatgaa cagcaggccg aggaaggtcg cggcgagcat gccgccgatc
      661 acgccggtgc cgatggcgtg ccgcgcgttg gcgccggcac cggtcgagat cgccagcggc
      721 agcacgccca tgatgaaggc gagcgaggtc atcaggatgg ggcgcaggcg cagtttcgcc
      781 gcctccacca ccgccgcccc gagcggcttg ccgagctgcc gctcctggat cgcgaattcg
      841 acgatcagga tggcgttctt cgcggccaag ccgatcaccg tgatcaggcc gatcttgaag
      901 tagatgtcgt tcggcaaccc gcgcagcatc gacagcagca ccgcgccgag gacgcccacc
      961 ggcaccacca gcagcaccga caccggcacc gaccagcttt cgtacagcgc cgccaggcac
     1021 aggaacacca ccacgatcga cagcaccatc agcatggtgg tctggctgcc ggacaggatt
     1081 tcctggtgcg actggcccgc ccagtcgtag ccgaagccgg ccggcaggtc cttgtcgacg
     1141 atgcgttgca tcgcgctcat cgcctcgccc gagctgtgcc cgggtgcctg cgcgccgacg
     1201 acctccaccg cggcgaaacc gttgtaacgg gtcagcgacg gcggggcgac ggtccacttg
     1261 gcgccgacca cgttcgacag cggaatcatc ggcggcaccg cgctgggcgt cgacgcgtcc
     1321 ggcacgggcg cggtgttcga cggggtgtag aactgcgcca gcgactccgg accggtgcgg
     1381 tacaccgcgt ccgcctgcat cagcacgcgc ttcacccggc cgccctgcac gaagtcgttg
     1441 acgtacaccg gcgccagcat cagctggatt gcgctgtaga tgtcgcccac cgacagcccc
     1501 atcgcctgcg cctgcacgcg gtcgacgtcg agcttgagct gcggcgccgg ctccagcgtg
     1561 ttcggccgca cgccgaccag cgccttgtcc tcgcccgcct tgcccagcag cgtgcccatc
     1621 gcctgcatca gcgcgtcgcg gccctggccg ctgcggtcct gcaggtacat gtcgaagccg
     1681 ccgaactggc cgaggccgtt caccgtcggc aggttgacca cgaagatctg cgcgtcccgg
     1741 atcggaaaca gcgctccgtt cgcctgctgg atgaagtcgc tggcggtgat cttgcgctcg
     1801 tcccacggct tgagcttgat gaacaccatg ccgacgttct cgccctggcc gatgaagctg
     1861 aagccggcca cctggaacat gccgtcgtag ccctcgaggt gctcgacctt gtcgcgcacc
     1921 tgctcgagca cggcgtcggt gcggcgcagg gtggcgcccg gcggcagctg cacaacggcc
     1981 agcgcgtagc cctggtcctc ctccggcagg aagctgcccg gcatgcgcca gaacaggaag
     2041 gcgcacagcg ccgccagcag gccgaacacc agcatccagc gcggcgcatg ccgcaccgcc
     2101 ccgccgatgt ggtgcacgta gatgttgctc atccgcccgt agaagcggtt gaaccagcgg
     2161 aacaccgggt tgcggctttc gtggtggacg ctcggcttga gcaggttggc gcacagcgcg
     2221 ggcgtgaagc cgagggcgag gaaggccgag aacagcatcg ccatggcgat ggtcagcgcg
     2281 aactgcttgt acaccgcgcc ggcactgccc gcctgcagcg cgctcgggat gaacaccgcc
     2341 gccaggacca gggtgatcgc gatcaccctg gtcctggcgg cggtgatctg ctccatcgcc
     2401 ttgcgggtcg cctccttcgg cgacaggccc tcctcggtca tgatgcgctc gacgttctcg
     2461 atcaccacga tcgcatcgac gaccacgatg ccgatcgcca gcaccatgcc gaacaggctg
     2521 agctggttga tggtgaagcc gagcaccttc atgccgagga acgtgccgag cagcgcgacc
     2581 gggatgacca gggtcgggat cagggtggcg cggaagttct gcaggtacag cagcatcacc
     2641 aggaagacga ggaccatcgc ctcgaccagc gtcttgacca cctcgtcgac cgagatgcgc
     2701 acgaagtcgg agctgtcgta cggcgagaac cagtgcacgc ccttggggaa gctcggctcg
     2761 agttcggcca tgcgcttctt gaccgcggcc gcgactgcga gcgcgttctc gccgggcgcg
     2821 agctgcacgg cgaagccggc ggccgggcgg ccgttccact tcaggtcgaa gccctgcgcc
     2881 gcgccggtca cctcgatgcg cgcgacatcc ttcaggcgca ccgcggcgcc ctgcggatcg
     2941 gtgcgcagca ggatctgctc gaactgctgc ggcgtgctga agcggccttc cgcggccacc
     3001 gacgcggtga acatctgggt gtcgggggag ggctcgccgc cgacctggcc cgccgagaac
     3061 tgcacgttct gcgcgcgcac cgcggccagc acctcgctcg ccgacaggcc gtacgcgtgc
     3121 agcttgtccg ggttgagcca gacatgcatg gcgtattcgc cgccgaacag ctgggtgttg
     3181 ccgacgccgg gcacgcgcga gacctggtcg atcacgttgg acgccagcag gtcggacagc
     3241 tggtcgcggc cgaaggtggg atcgtcggaa gtcaccgcga ccacgagcag gaagccctgg
     3301 ttcgccttct gcaccaccac gccctgctgc accacgtcgg tgggcaggcg cggcgtcgcc
     3361 tgcgacacct tgttctgcac ctgcatctgc gcggtgtccg gatcggtgcc cggcttgaac
     3421 gtgaggttga ccgacgcgct gccgtccgag ccggacgagg aactgaagta atcgaggttg
     3481 tcgatgccgg tgagctgctg ctcgatgatc tgcgtcaccg cgcgctcgac cgtttccgcg
     3541 ctcgcgcccg gatagctggc gaacacgccg acctgcggcg gggcgatgtt ggggtaggac
     3601 tccacgccga ggctgcggat cgaaagcagg ccggcgagca cgatcatgat cgcgatcacc
     3661 caggcgaaca ccgggtggtt gatgaaatag cgcgacatgg cgctcagccc ttgcgcgcgg
     3721 cggcggacgc cggcgcggcc ggcttgccgg cctgctccgg cggcgtcggc gtcgccttcg
     3781 ccggctggcc gggctgggcg cgctgcaggc cggagacgat cacccggtcg ccgttggcga
     3841 ggccgccatt cacgatccag tcggcgccgt cctggcgctc ggtggtgact tccttgcgcg
     3901 cgaccttgcc gtcgttgccg accacgagca cgtatgcgcc ctgcccgtcg cgctgcagcg
     3961 cgacctgcgg cacgcggaac gccccgtgct cctcgcccaa ggtggccttg agggtcacga
     4021 aggtgcccgg cagcagggtg tgctcgggat tcggaacgcg cgcgcgcagc gagaccgcgc
     4081 cggtggcggg atcgaccacg ttgcccgcga aatcgagggt gccggcgtgc cggtacacgc
     4141 tgccgtccgg cagcaccacc tgcacctcgc gctggctggt gccgttgtcg cgctggcgga
     4201 tgctggtcag ctgggcgacg ctgagcgaga agtcgatgta gagcggatcg atctggtcga
     4261 ccgtggtcag cagcgtcgcc gcgccctgcc cgaccagcgc gccctcggtc ac
//
LOCUS       DATIQC010000268         1938 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_265235, whole genome shotgun sequence.
ACCESSION   DATIQC010000268 DATIQC010000000
VERSION     DATIQC010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_265235"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1095
                     /locus_tag="VLM17_05640"
     CDS             <1..1095
                     /locus_tag="VLM17_05640"
                     /inference="COORDINATES: protein motif:HMM:NF015737.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HSR65072.1"
                     /translation="VTSPACAVQPAPAGGSALFCNPASYVAPGADQNYLFADGVHPSA
                     AAHALVAQYAISMLEAPNQVSVLPHVESVAGRARAERVAAQLAVKPAGDGMRWWGDVQ
                     GDFQRYGDGNLYDGSGPTASFGLDWSAGNLRYGGFAGFGRQDYDWGMRRGDFSEHEAT
                     IGGFLGWAGDSAWINGQLSYSHLGFDTDRDIVLGPAVRTQHGSTSGRNISAGVNGGWN
                     FDSGNWHHGPFASVLYQRIDVDGFAEDTPTQSTSLAYPDQRFRSLVGSLGWQVSYTPS
                     DRIQPYARVGWDREFRRMPDEAFAQAQSIPGSLAYAVPGIQFDRTYGTVLLGARTRVW
                     GLDANFGASTTVAQEGGDNASVFVTFGNSF"
     gene            1173..1246
                     /locus_tag="VLM17_05645"
     tRNA            1173..1246
                     /locus_tag="VLM17_05645"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1205..1207,aa:Gly,seq:ccc)
     gene            1314..1850
                     /locus_tag="VLM17_05650"
     CDS             1314..1850
                     /locus_tag="VLM17_05650"
                     /inference="COORDINATES: protein motif:HMM:NF017434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK/LysX family protein"
                     /protein_id="HSR65073.1"
                     /translation="MSDVVVLGWREWVALPELGIGRLRAKVDTGARSSALHVDAHWRF
                     VEGGAPWVGFRLHVGRRFPRPIEACAPLHDEREVVDSGGHRCRRPFLRTTLSLAGHAR
                     AIELNLCDRRGMLFPMLLGRSALDGLFAVDPARSFVHGRARRAPDAMPRHGNASMTIP
                     PPPPAFVPAGGPSLRIPE"
BASE COUNT          251 a          733 c          677 g          277 t
ORIGIN      
        1 gtcaccagcc cggcctgcgc cgtgcagccg gcgcccgccg gcggttcggc cctgttctgc
       61 aacccggcct cctacgtcgc ccccggcgcg gaccagaact acctgttcgc cgacggcgtg
      121 catccgagcg cggccgcgca cgcgctggtc gcgcagtacg cgatctcgat gctcgaggcg
      181 cccaaccagg tctcggtgct gccgcacgtc gagtccgtgg ccggccgcgc gcgcgccgag
      241 cgggtggcgg cccagctggc ggtgaagccc gccggcgacg gcatgcgctg gtggggcgac
      301 gtgcagggcg acttccagcg ctacggcgat ggcaacctct acgacggcag cggcccgacc
      361 gcgagcttcg gcctcgactg gagcgcgggc aacctgcgct acggcggctt cgccggcttc
      421 ggccgccagg actacgactg gggcatgcgc cgcggcgact tcagcgagca cgaggcgacg
      481 atcggcgggt tcctcggctg ggcgggcgac agcgcctgga tcaacggcca gctcagctac
      541 agccacctgg gcttcgacac cgaccgcgac atcgtgctcg gcccggcggt gcgcacccag
      601 cacggttcca ccagcggccg caacatcagc gccggggtga acggcggctg gaacttcgac
      661 agcggcaact ggcaccacgg tccgttcgcg tccgtgctct accagcgcat cgacgtcgac
      721 ggcttcgccg aggacacccc gacccagtcg acctcgctcg cctacccgga ccagcgcttc
      781 cgctcgctgg tcggaagcct cggctggcag gtcagctaca cgccgagcga ccgcatccag
      841 ccctacgcgc gcgtgggctg ggaccgcgag ttccgccgca tgccggacga ggcgttcgcg
      901 caggcgcagt cgatcccggg ctcgctggcc tacgcggtcc caggcatcca gttcgaccgc
      961 acctacggga ccgtgctgct cggcgcgcgc accagggtgt gggggctgga cgcgaacttc
     1021 ggcgccagca ccacggtggc ccaggaaggc ggcgacaacg ccagcgtctt cgtcaccttc
     1081 ggcaacagct tctgatccgg ccggcggcgg ggcgccacgc gcgtcccgcc gcgttgccag
     1141 ccggcgcgcg gcgggcatag acttccgctc ccgcgggtgt agttcaatgg tagaactgca
     1201 gcttcccaag ctgctagcgt gggttcgatt cccatcaccc gctccacatt ccggcaacgg
     1261 cggcccgtgc aacatggccg ccgttttcgt ttccgcaacg ctcggtgagg cgcatgtccg
     1321 acgtggtcgt gctcggctgg cgggaatggg tggcgttgcc cgagctcggc atcggccggt
     1381 tgcgcgccaa ggtcgacacc ggcgcgcgca gttccgcgct gcacgtcgat gcgcactggc
     1441 gcttcgtcga gggcggggcg ccgtgggtcg gcttccgcct gcatgtcggg cgccggtttc
     1501 cgcggccgat cgaggcctgc gcgccgctgc acgacgaacg cgaggtggtc gactccggcg
     1561 gccaccgctg ccggaggccc ttcctgcgca cgaccctgtc gctggccggc catgcgcgcg
     1621 ccatcgagct caacctgtgc gaccgccgcg gcatgctgtt cccgatgctg ctcggccgga
     1681 gcgcgctgga cggcctgttc gcggtcgatc cggcgcgctc gttcgtgcac ggccgcgcgc
     1741 ggcgcgcgcc ggacgcgatg ccgcgacacg ggaacgcgag catgaccatt cccccgccgc
     1801 cgcccgcctt cgtgccggcc ggcggcccgt ccctgcggat ccccgaatga aactcgccat
     1861 cctctcgcgc aacggcaagc tctattccac ccgccggctg gtcgaggcgg cgcgcgagcg
     1921 ccgccacagc gtgcgcgt
//
LOCUS       DATIQC010000269         3137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_583337, whole genome shotgun sequence.
ACCESSION   DATIQC010000269 DATIQC010000000
VERSION     DATIQC010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_583337"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2908
                     /locus_tag="VLM17_05655"
     CDS             <1..2908
                     /locus_tag="VLM17_05655"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR65074.1"
                     /translation="DAAGVGHGGRALLARLLDAPDLPTFAARAAACLRDEGLIGAALG
                     WFAPDGTLALHGDTDAADQALARRAHESGQAADPARRRVGARVLARGDGGGLVLLADG
                     VADARLADHCGFLAPLAQAVSEKARLTASLDQLAHSEQLQSALFAIADMASSDMDLND
                     MLRALHAIVDRFMYAENFYIALYDDAQDALRFIYLLDTIDPIVRDANELTPMAEMERG
                     LTWYLVRDRKPLMGSLAEIRRQVSGPTREIGVDCFDWLGVPVIIGDRVRGVLVVQSYV
                     ERPRYTLADQALLSYVGSHILTAVDRKLAQEELERRVEQRTRELTQEVAERQRSERLQ
                     ATLYRIAELSHTATNLDEFYAAVHRIVGESLDARNFYIATLSDDGQSLDFPYYVDEFR
                     ARGQSRRLGNGISEYVIRLGRPWHFDRADPASAAQLGRLETSGEIATSGPDAIAWLGV
                     PLVQRGRVIGVLAVQSYTQGVGYSERDRDLLTFISYQIANGLERQRAAAALKDAYADL
                     ERRVAERTVELSEQIAVREQVEQRLKHQVLHDPLTGLPNRAYLRDQLARALAHRQRDP
                     DYRFAVLFMDLDRFKVINDSVGHLVGDALLQEVAQRFSQCARGGRDMVARLGGDEFAI
                     LMDLDHHDGALRTAQRVIEALKEPVRVQGKELFSGVSVGIAVSSPRYTTPEDLLRDAD
                     IAMYRAKSGGRHRFEVFDEELHDEALQLLEVESDLRRGASRQEFVPYFQPIVHLADGA
                     VAGYEALMRWNHPERGVLAPGAFLHVAEASGSMEALDWQLFEQALRMAPRLLAPGQYV
                     NLNFSPRHFRSPDLDQRFLALVDACDVDPAQVRIEVTEGALLENPEQIGQVFARLCER
                     GVRIALDDFGTGYSSLSYLHRFQMHTLKIDRSFVGDLRSDGERGSTAVVRAILALSRA
                     QQLEVVAEGIETEEQRQALLGLGCELGQGYLFARPLSLQALLASSRLALAATPG"
     gene            3011..>3137
                     /locus_tag="VLM17_05660"
     CDS             3011..>3137
                     /locus_tag="VLM17_05660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c5 family protein"
                     /protein_id="HSR65075.1"
                     /translation="MRNYDLDFLKKFSMVIGFLVLVMFALIGLALYLYANHPPPRS"
BASE COUNT          447 a         1132 c         1106 g          452 t
ORIGIN      
        1 ggatgccgcg ggcgtcggcc acggcggtcg cgcgctgctg gcgcgcctgc tggacgcgcc
       61 ggacctgccg accttcgccg cgcgcgccgc cgcctgcctg cgcgacgagg gactgatcgg
      121 cgcggcgctc ggctggttcg cgccggacgg cacgctcgcc ctgcatggcg acaccgatgc
      181 cgccgaccag gcgctcgcgc gccgcgcgca cgaatccggg caggcggccg acccggcccg
      241 ccggcgggtc ggcgcgcggg tgctggcgcg tggcgatggc ggcggcctgg tgctgctcgc
      301 cgacggcgtg gccgatgcgc gcctggccga ccactgcggc ttcctggcgc cgctcgcgca
      361 ggcggtgtcg gagaaggcgc gcctgaccgc ttcgctcgac cagctggcgc attcggagca
      421 gctgcagtcc gcgctgttcg ccatcgccga catggccagc tcggacatgg acctcaacga
      481 catgctgcgt gcgctgcacg cgatcgtcga ccggttcatg tacgccgaga acttctacat
      541 cgcgctctac gacgacgcgc aggacgcgct gcgcttcatc tacctgctcg acaccatcga
      601 cccgatcgtc cgcgacgcga acgagctgac gccgatggcg gagatggaac gcgggctgac
      661 ctggtacctg gtgcgcgacc gcaagccgct gatgggctcg ctggccgaga tccgccgcca
      721 ggtgtcggga ccgacccgcg agatcggcgt cgactgcttc gactggctgg gcgtgccggt
      781 gatcatcggc gaccgcgtgc gcggcgtgct ggtggtgcag agctacgtcg agcggccgcg
      841 ctacacgctg gccgaccagg cgctgctgtc ctacgtcggc agccacatcc tcaccgcggt
      901 ggaccgcaag ctcgcgcagg aggaactcga gcggcgggtc gaacagcgca cccgcgagct
      961 gacccaggaa gtcgccgagc gccagcgcag cgagcgcctg caggcaacgc tctaccgcat
     1021 cgccgagctg tcgcacaccg cgaccaacct cgacgagttc tacgcggcgg tgcaccggat
     1081 cgtcggcgag tcgctggacg cgcgcaattt ctacatcgcc accctgtcgg acgacgggca
     1141 gtcgctcgac ttcccgtact acgtggacga gttccgcgcc cgcgggcaga gccgccggct
     1201 cggcaacggc atctccgaat acgtgatccg gctcggccgg ccgtggcact tcgaccgcgc
     1261 cgatcccgcg agcgcggcgc aactgggccg gctggaaacc agtggcgaga tcgccaccag
     1321 cggaccggac gccatcgcct ggctgggcgt gccgctggtg cagcgcggac gggtgatcgg
     1381 cgtgctcgcg gtgcagagct acacgcaggg cgtgggctac agcgagcgcg accgcgacct
     1441 gctcaccttc atctcctacc agatcgccaa cggcctggag cgccagcgcg cggcggcggc
     1501 gctcaaggac gcgtacgccg acctcgagcg gcgcgtggcc gagcgcacgg tcgagctgtc
     1561 cgagcagatc gcggtgcgcg aacaggtcga gcagcggctc aagcaccagg tgctgcacga
     1621 tccgctcacc ggcctgccca accgggccta cctgcgcgac cagctggcgc gagcgctcgc
     1681 ccaccggcag cgcgacccgg actaccgctt cgcggtcctg ttcatggacc tcgaccgctt
     1741 caaggtgatc aacgacagcg tcggccacct ggtcggcgac gcgctgctcc aggaggtggc
     1801 gcagcgcttc tcgcagtgcg cgcgcggcgg tcgcgacatg gtggcgcggc tggggggcga
     1861 cgaattcgcc atcctgatgg acctggacca ccacgacggc gcgctgcgga cggcccagcg
     1921 ggtgatcgag gcgctgaagg aaccggtgcg ggtgcagggc aaggagctgt tctccggggt
     1981 cagcgtcggc atcgcggtca gctcgccccg ctacacgacg cccgaggacc tgctgcgcga
     2041 cgccgacatc gcgatgtacc gcgcgaagtc cggcggccgg caccgcttcg aggtgttcga
     2101 cgaggaactg cacgacgagg cgctgcaact gctggaggtg gagagcgacc tgcgccgcgg
     2161 cgccagccgg caggaattcg tgccctactt ccagccgatc gtgcacctgg ccgacggcgc
     2221 ggtcgccggc tacgaggccc tgatgcgctg gaaccatccc gagcgcggcg tgctcgcgcc
     2281 gggcgcgttc ctgcacgtgg ccgaggccag cggcagcatg gaggcgctgg actggcagct
     2341 gttcgagcag gcgctgcgga tggcgccacg gctgctggcg ccgggccagt acgtcaacct
     2401 caacttctcg ccgcgccatt tccgctcgcc cgacctcgac cagcgcttcc tcgccctggt
     2461 cgacgcctgc gacgtggatc cggcgcaggt gcgcatcgag gtcaccgagg gcgcgctgct
     2521 ggaaaacccc gagcagatcg gccaggtgtt cgcccggttg tgcgagcgcg gggtgcgcat
     2581 cgccctggac gatttcggca ccggctattc ctcgctgagc tacctgcacc gcttccagat
     2641 gcacacgctg aagatcgacc gttccttcgt cggcgacctg cgcagcgacg gcgagcgcgg
     2701 cagcaccgcg gtggtacggg cgatcctcgc gctctcgcgc gcccagcagc tggaggtggt
     2761 ggccgagggc atcgagaccg aggagcagcg ccaggccctg ctggggctgg gctgcgagct
     2821 cggccagggc tacctgttcg cccgcccgct gtcgctgcag gcgctgctcg ccagcagccg
     2881 cctcgcgctc gccgccacgc ccggctgaag ccgattccgg gccaagctcg cgtcggccgg
     2941 gcgcttctgg aataatttcc gctttctgta ccgctttccc gcgcggccgc gccgcgccct
     3001 aggatggatc gtgcgcaact acgacctcga cttcctcaag aaattctcga tggtgatcgg
     3061 cttcctggtg ctggtcatgt tcgccctgat cgggctcgcg ctgtacctgt acgcgaacca
     3121 cccgccgccg cgcagcc
//
LOCUS       DATIQC010000270         8817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_618855, whole genome shotgun sequence.
ACCESSION   DATIQC010000270 DATIQC010000000
VERSION     DATIQC010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8817
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618855"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..731
                     /gene="ftsA"
                     /locus_tag="VLM17_05665"
     CDS             <1..731
                     /gene="ftsA"
                     /locus_tag="VLM17_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HSR65076.1"
                     /translation="ANISKCVQRCGLQVDDLILGSLASSTAVLTPDERERGVVLVDMG
                     AGTTDIAVFVQGAIAHSASLPIAGDKVTEDIAHMLRTPTPEAEQIKVRYACALAQLAT
                     SEESIQVPSVGDRPPRRLPRQSLAQAVQARYEEIFEMVQAELRRSGFEQHVRAGMVLT
                     GGAAKMEGVVELAEEMLQMPVRVGIPQHVTGLGEVVGNPVHATGVGLLLMGSQIEHPR
                     RPVLPTGRAGTFLTKLKNWYRGEF"
     gene            843..2081
                     /gene="ftsZ"
                     /locus_tag="VLM17_05670"
     CDS             843..2081
                     /gene="ftsZ"
                     /locus_tag="VLM17_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017170527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HSR65077.1"
                     /translation="MAHFELVEKMAPNAVIKVVGVGGGGGNAVAHMVNGSVDGVEFIT
                     ANTDAQAIKNCGAKLQLQLGSNVTKGLGAGANPEVGRQAALEDRERIMDALQGADMVF
                     ITAGMGGGTGTGAAPVVAQLAKEMGILTVAVVTKPFPFEGRRRMQVALKGIEELSQHC
                     DSLITIPNEKLITVLGRNATMIQAFRAANDVLLGAVQGIADLIVRPGLINVDFADVRT
                     VMSEMGLAMMGTGSARGDDRAQAAAEAAIQNPLLDDVNLAGANGILVNITAGPDFTMA
                     EFDEVGRTVEHFASEDATVVIGTVLDPEMQDEVKVTVVATGLNRATVRQPVRGHGEGR
                     AEFGEVRRTQVELVRSQGKRDGTTGMLIDAVADPYQPGNSLASGLRRGAEPAAATPAV
                     ADFGGDSYLDIPAFLRRQAD"
     gene            2305..3213
                     /gene="lpxC"
                     /locus_tag="VLM17_05675"
     CDS             2305..3213
                     /gene="lpxC"
                     /locus_tag="VLM17_05675"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004427486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HSR65078.1"
                     /translation="MLAQRTLKNVIRATGVGLHSGEKVYLTLRPAPVDTGIVFRRVDL
                     EPVVDIPADASLVTETMLCTGLSQGGGKVMTIEHLMSAFAGLGIDNAYVDLSAPEVPI
                     MDGSAGPFVFLLQSAGISEQGAPKRFIRITRPVEVREGDKVARFEPHDGFRLGFTVQF
                     DHPAIPRSLSRAEVDFSSTSYIKEVSRARTFGFMRDLEFMRERNLGLGGSMDNAIVLD
                     EFRVLNDDGLRYADEFVRHKILDAVGDLYLAGHPILGAFEGYKSGHALNNKLVRALLA
                     ERTAWEEVTFPDAAAAPLGFGALVPA"
     gene            complement(3361..3807)
                     /locus_tag="VLM17_05680"
     CDS             complement(3361..3807)
                     /locus_tag="VLM17_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HSR65079.1"
                     /translation="MSASRSLPPGPTGQKPPRTALDALFASGGGDPIRRALWLDALDQ
                     RLRPLLPPGLSAHARLANVDGARLVFLVDSPVWHARLRYAANELLDAARSVGLEVGEL
                     VVKVTTNPLQPGPPVQRTPAPMSAAAREALQAALASLGPKQDKDGT"
     gene            3812..4750
                     /locus_tag="VLM17_05685"
     CDS             3812..4750
                     /locus_tag="VLM17_05685"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012439217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSR65080.1"
                     /translation="MTLQKATLQSLLHDTRGGLVRVARQLRAAARRQPALATVLLLAA
                     GVAFGAGARAGAGSIELTHLRAQAAQQQAALDNTRAQAQREVNALAARLAELQAQANR
                     LNALGERLTRVAKLNDGEFDFDKPVGIGGVGAVHDMHPGELRTGLGQLGSQFDTAGGQ
                     LSVLESLLFNRKLDQRATPSRMPIADSYITSGFGGRADPFGGGAAFHKGIDFHASIGD
                     PVLAVADGVVSYAGQRSGYGNVVEIDHGNGYVTRYAHNSRLLVRVGELVHQGQQVARA
                     GSTGRSTGAHVHFEVWVAGRVVNPSRFLGQRPVTRG"
     gene            4891..7629
                     /gene="secA"
                     /locus_tag="VLM17_05690"
     CDS             4891..7629
                     /gene="secA"
                     /locus_tag="VLM17_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017112773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HSR65081.1"
                     /translation="MLNRLLTSVFGSRNERLLRQLNGIVRKINALEPQMQALADEALQ
                     AKTAEFRERIGKGETLDKLLPEAFAVCREASVRVFGMRHFDVQLIGGMVLHMGKIAEM
                     RTGEGKTLTATLAVYLNALEGKGVHVVTVNDYLARRDAVQMGRLYGWLGLTTGVVFPG
                     MPHSDKHEAYGADITYGTNNEFGFDYLRDNMALSKEDRYQRGLNFAIVDEVDSILIDE
                     ARTPLIISGPADESPELYIKVNRIVPQLVRQKEEEGEGDYWVDEKSKQVHLSEDGQEH
                     AEALLRRVGILGEDESLYAPQNIHVVHHLNAGLRAHGIYQRDVDYIVRDGEVVIVDEF
                     TGRTLPGRRWSDGLHQAVEAKEGVPVQRENQTLASITFQNLFRMYRKLAGMTGTADTE
                     AFEFQSIYGLEVVVIPTHRPMIRKDHSDAVFLNRNGKYRAVLNEIREANARRQPVLVG
                     TTSIEVSEMLSEQLKDAGVAHEVLNAKQHEREAHIVAQAGRPGAVTIATNMAGRGTDI
                     VLGGSLDAELAELGEDADEVAKARVKSEWQQRHEAVVAAGGLHIVGTERHESRRIDNQ
                     LRGRSGRQGDPGSSRFYLSLEDNLMRIFAADWVQRVMARMGLKEDDIIESPLVTKQIA
                     NAQRKVEAHNFDIRKNLLDFDDVNNDQRKVIYQQRDELLEADSVKDNIDGIRQDVVAA
                     IVERHVPANSIDEQWDLAGLEAELAAEFGVQVPLRDIVASRNEMDAEQIADEVQQAIA
                     RMFDEKEGLVGAETMRMIEKHLMLNVLDQNWKEHLARMDYLRQGIHLRGYAQKQPKQE
                     YKSEAFLLFSDMLEKVKREVITMIAKVRVRTEEEVAAAEAQERARAEAMARQMQFQHA
                     DMGGYGSAEEASQTPEGAALAATLPAAAAAVAKVGRNDPCPCGSGKKFKHCHGQLA"
     gene            7769..8773
                     /locus_tag="VLM17_05695"
     CDS             7769..8773
                     /locus_tag="VLM17_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nudix family hydrolase"
                     /protein_id="HSR65082.1"
                     /translation="MNDSRPPSPAVPAVEVVAGVIRDPRGRVLLARRTEGRDLAGLWE
                     FPGGKVEPGESADAALARELHEELGIDAEVGAPLITVPQQYPNKLLRLDVRMVRRWRG
                     SARGQEGQALAWVPPHKLPDYPMPPADRPVVAALLQPDRYLVTPAPPADGDAWLQALR
                     QALAAGIRRVQLRGGGGIEPTRWRALVEAAMAACRDAGADVLLNDDIALARALGIGVH
                     LRAARLSLLDARPLDAACLVGASCHDLDELRRAQALGCDFAVLGPVAATASHPGAATL
                     GWHGFAALREAVSLPLYAIGGMAAADIAAARAHGAQGVAAIRALWPGLLPQADGAGAA
                     "
BASE COUNT         1388 a         3121 c         3127 g         1181 t
ORIGIN      
        1 cggccaacat cagcaagtgc gtgcagcgtt gcggactgca ggtcgacgac ctgatcctgg
       61 ggtcgctggc ctcgagcacc gcggtcctga cgcccgacga acgcgagcgc ggcgtggtcc
      121 tggtcgacat gggcgcgggc accaccgaca tcgcggtgtt cgtgcagggc gcgatcgcgc
      181 actcggcctc gctgccgatc gccggcgaca aggtcaccga ggacatcgcg cacatgctgc
      241 gcacgcccac gccggaagcc gagcagatca aggtgcgtta cgcctgcgcg ctggcgcagc
      301 tggcgacctc ggaggagtcg atccaggtgc cgagcgtcgg cgaccgcccg ccgcggcgcc
      361 tgccgcgcca gtcgctggcg caggcggtgc aggcgcgcta cgaggaaatc ttcgagatgg
      421 tgcaggcgga actgcgccgc tcgggcttcg agcagcacgt gcgcgcgggc atggtcctga
      481 ccggcggcgc cgccaagatg gaaggcgtgg tcgagctcgc cgaggagatg ctgcagatgc
      541 cggtgcgcgt cggcatcccg cagcacgtga cgggcctggg cgaggtggtc ggcaacccgg
      601 tgcacgccac cggcgtcggc ctgctgctga tgggcagcca gatcgaacat ccgcgacgtc
      661 ccgtgctgcc gaccgggcgc gcgggcacct tcctgacgaa attgaagaac tggtatcgcg
      721 gcgagttctg acatacgcgc cgggcgcgaa ggcgcgcgcg gcgggcgagg gcggcagggc
      781 gacttgcggt gattggaagt acccgattcg acatcagcac cacataacaa gaggacacgg
      841 acatggcgca cttcgaactg gtggaaaaga tggccccgaa cgcggtcatc aaggtggtcg
      901 gcgtgggcgg cggcggcggc aacgcggtcg cgcacatggt caacggcagc gtggacggcg
      961 tggagttcat caccgccaac accgacgcgc aggcgatcaa gaactgcggc gcgaagctgc
     1021 agctgcagct cggcagcaac gtcaccaagg gcctcggcgc cggcgccaac cccgaagtgg
     1081 gccgccaggc cgcgctcgag gaccgcgaac gcatcatgga cgcgctgcag ggcgccgaca
     1141 tggtgttcat caccgccggc atgggcggcg gcaccggcac cggcgcggcg ccggtcgtcg
     1201 cgcagctggc caaggagatg ggcatcctga cggttgccgt cgtcaccaag ccgttcccgt
     1261 tcgagggccg ccgccgcatg caggtggcgc tcaagggcat cgaggaactc agccagcact
     1321 gcgactcgct gatcacgatc cccaacgaga agctgatcac cgtgctgggc cgcaacgcca
     1381 ccatgatcca ggcgttccgc gccgcgaacg acgtgctgct cggcgccgtc cagggcatcg
     1441 ccgacctgat cgtgcgcccc ggcctgatca acgtcgactt cgccgacgtg cgcaccgtga
     1501 tgagcgagat gggcctggcg atgatgggca ccggcagcgc ccgcggcgac gaccgggcgc
     1561 aggccgccgc ggaggccgcg atccagaacc cgctgctcga cgacgtcaac ctcgccggcg
     1621 ccaacggcat cctggtcaac atcaccgccg gcccggactt caccatggcc gagttcgacg
     1681 aagtcggccg cacggtggag catttcgcca gcgaggacgc gaccgtcgtc atcggcacgg
     1741 tgctcgatcc ggagatgcag gacgaggtca aggtcaccgt cgtcgccacc ggcctgaacc
     1801 gggccaccgt gcgccagccg gtgcgcgggc atggcgaagg ccgcgcggag ttcggcgagg
     1861 tgcgtcgtac gcaggtggaa ctggtgcgca gccagggcaa gcgcgacggc accaccggca
     1921 tgctgatcga cgcggtcgcc gatccgtacc agccgggcaa cagcctcgcc tcgggcctgc
     1981 gtcgcggcgc cgaaccggcg gcggcgaccc cggcggtggc cgatttcggt ggcgacagct
     2041 acctcgacat cccggccttc ctgcgccgcc aggcggattg aggtccggcc accgtcccgg
     2101 cccgtgccgg gcggtggcgc agtgtcctgt ccttgccgcc gggccccggc ccggcggcct
     2161 tctgccggcg ggctcccgcc tgctgaatgc atgctgcgac gcagcgccct gttcgttcag
     2221 gttcagcggg ctgcgtgcta ggcttccgtc cttccttcgg ccccgccgcc gttgtattcc
     2281 gcgcccctgt ccacgcctgg cccgatgctc gcgcaacgca ccctcaagaa cgtgatccgc
     2341 gccaccggcg tcggcctcca cagcggtgag aaggtctacc tcaccctgcg cccggccccg
     2401 gtcgacaccg ggatcgtgtt ccgccgggtg gatctcgagc cggtcgtcga cattcccgcc
     2461 gacgccagcc tcgtcaccga gacgatgctg tgcaccggcc tgtcgcaggg cggcggcaag
     2521 gtgatgacga tcgagcacct gatgtcggcc ttcgcgggcc tcggcatcga caacgcctac
     2581 gtcgacctgt cggcgccgga agtgccgatc atggacggct cggccggccc gttcgtgttc
     2641 ctgctgcagt ctgcgggcat cagcgagcag ggggcgccca agcgcttcat ccgcatcacc
     2701 cggccggtgg aggttcgcga aggcgacaag gtcgcgcgct tcgaacccca cgacggcttc
     2761 cggctcggct tcaccgtgca gttcgaccat ccggccatcc cgcgctcgct ctcgcgcgcc
     2821 gaagtcgatt tctccagcac gtcgtacatc aaggaagtca gccgcgcgcg caccttcggc
     2881 ttcatgcgcg acctggaatt catgcgcgaa cgcaacctcg gcctcggcgg ctcgatggac
     2941 aacgccatcg tgctcgacga gttccgcgtg ctgaacgacg acgggttgcg ctatgccgac
     3001 gagttcgtgc ggcacaagat cctggacgcg gtcggcgacc tctacctcgc cggccatccg
     3061 atcctcggcg cgttcgaggg gtacaagtcc ggccacgcgc tcaacaacaa gctggtgcgc
     3121 gcgctgctgg ccgagcgcac ggcctgggaa gaggtcacct tccccgatgc ggccgccgcg
     3181 ccgctgggct tcggcgcgct ggtcccggcc tgaggccggc ttctccgaca ggcggcccac
     3241 gccttaacgc aaccctagcg ttttcttagc cttcccggtc gcgggcttaa cgcccgtgcg
     3301 gcgcccggcg ggtaggatgc gcccttcctc gcggccgggg ttccacggtc cgcggggaaa
     3361 tcaggtcccg tccttgtcct gcttcggacc gagcgaggcc agtgcagcct gcagcgcttc
     3421 gcgtgcggct gccgacatcg gcgcaggggt gcgctgcacc gggggtcccg gctgcaacgg
     3481 gttcgtcgtc accttgacga ccagctcgcc gacttcgagc ccgacggagc gggccgcgtc
     3541 gagaagctcg ttggccgcat agcgcaggcg cgcgtgccag accggcgaat cgacgaggaa
     3601 gaccaggcgg gcgccgtcca cgttggccag ccgcgcatgc gcggacaggc cgggcgggag
     3661 cagcggccgc aggcgttgat cgagggcgtc gagccacagc gcacgacgga tcggatcgcc
     3721 gccaccgctg gcgaacagcg cgtcgagcgc ggtacgcggc ggtttctggc cggtgggccc
     3781 cggtggcaac gaacgggagg cggacatcgc gatgaccttg cagaaggcga ccttgcagag
     3841 cttgctccac gatacccgcg gcgggctcgt ccgggtggcg cgccagctgc gcgcggccgc
     3901 gcgccgccag cctgcgctgg cgacggtgct gctgctggcg gccggcgtgg ccttcggcgc
     3961 gggcgcccgc gcgggggccg gttcgatcga actgacccac ctgcgtgcgc aggccgcgca
     4021 acagcaggcc gcgctcgaca atacccgcgc ccaggcccag cgagaagtca acgcgctcgc
     4081 cgcgcgcctg gccgaactgc aggcccaggc gaaccggctc aacgcgctcg gcgaacgcct
     4141 gacccgggtg gccaagctca acgacggcga gttcgatttc gacaagcccg tcggcatcgg
     4201 cggcgtcgga gcggtgcacg acatgcatcc gggcgaactg cgcacgggcc tgggccagct
     4261 cggctcccag ttcgacaccg ccggcggcca gctgtcggtg ctcgagtcgc tgctgttcaa
     4321 ccgcaagctc gaccagcgcg cgacgccttc gcgcatgccg atcgccgaca gctacatcac
     4381 ctccggcttc ggcggccgtg ccgatccgtt cggcggcggc gcggccttcc acaagggcat
     4441 cgacttccac gccagcatcg gcgatcccgt cctggcggtg gccgacggcg tggtcagcta
     4501 tgcgggccag cgctcgggtt acggcaacgt ggtcgagatc gaccacggca acggctacgt
     4561 gacccgctac gcgcacaact cgcggctgct ggtgcgggtc ggcgaactgg tccaccaggg
     4621 ccagcaggtg gcgcgggccg gctcgaccgg gcgctcgacc ggcgcccacg tgcacttcga
     4681 ggtgtgggtc gccggccggg tggtgaaccc cagccgcttc ctcggccagc gcccggtgac
     4741 gcgcggctga gcgtccggcc gcttgatagg cggccccggc gtcctcacgt tagaatcggc
     4801 agttgccaca gggcgcccag gcgccctgtt tcgttaagcg ggcccggaaa gcgcccgccg
     4861 acgccgtccc tttcccggat ccgcctcccc atgctcaacc gcctgctcac cagcgtcttc
     4921 ggcagccgca acgaacgcct gctccgccag ctcaacggca tcgtcaggaa gatcaacgcg
     4981 ctcgagccgc agatgcaggc gctcgccgac gaggccctgc aggcgaagac ggcggagttc
     5041 agggagcgga tcggcaaggg cgagacgctg gacaagctgc tgccggaggc gttcgcggtg
     5101 tgccgcgagg cgagcgtgcg cgtgttcggc atgcgccact tcgacgtgca gctgatcggc
     5161 ggcatggtcc tgcacatggg caagatcgcc gagatgcgca ccggcgaggg caagaccctg
     5221 accgcgacgc tggcggtgta cctcaacgcg ctggaaggca agggcgtgca cgtggtcacc
     5281 gtcaacgact acctggcgcg ccgcgacgcc gtgcagatgg gccgcctgta cggctggctc
     5341 ggcctcacca ccggcgtggt cttcccgggc atgccgcact cggacaagca cgaggcctac
     5401 ggcgccgaca tcacctacgg caccaacaac gagttcggct tcgactacct gcgcgacaac
     5461 atggcgctgt cgaaggagga ccgctaccag cgcggcctca acttcgcgat cgtcgacgag
     5521 gtcgactcga tcctgatcga cgaggcgcgc acgccgctga tcatctccgg cccggccgac
     5581 gagtcgccgg agctctacat caaggtcaac cgcatcgtcc cccagctggt ccgccagaag
     5641 gaggaggaag gcgagggcga ctactgggtc gacgagaaga gcaagcaggt gcacctgtcc
     5701 gaggacggcc aggagcatgc cgaggcgctg ctgcgccggg tcggcatcct cggcgaggac
     5761 gagagcctgt acgcgccgca gaacatccac gtcgtccacc acctcaacgc cggcctgcgc
     5821 gctcacggga tctaccagcg cgacgtggac tacatcgtgc gcgatggcga agtggtcatc
     5881 gtcgacgaat tcaccggccg cacgctgccg ggccggcgct ggtccgacgg cctgcaccag
     5941 gcggtcgagg cgaaggaagg ggtgccggtg cagcgcgaga accagacgct cgcctcgatc
     6001 accttccaga acctgttccg catgtaccgc aagctcgccg gcatgaccgg cacggcggac
     6061 accgaggcgt tcgagttcca gtccatctac ggcctggagg tggtggtgat cccgacccac
     6121 cggccgatga tccgcaagga ccactcggac gcggtgttcc tcaaccgcaa cggcaagtac
     6181 cgcgcggtgc tcaacgagat ccgcgaggcg aacgcgcgcc ggcagccggt gctggtcggc
     6241 accacctcga tcgaggtgtc ggagatgctg tccgagcagc tcaaggacgc cggcgtggcg
     6301 cacgaggtgc tcaatgccaa gcagcacgag cgcgaggcgc acatcgtcgc ccaggccggc
     6361 cgcccgggcg cggtgaccat cgcgacgaac atggccggcc gcggcaccga catcgtgctc
     6421 ggcggctcgc tcgacgcgga gctcgccgaa ctcggcgaag acgccgacga ggtcgccaag
     6481 gcgcgggtga agtccgaatg gcagcagcgc cacgaggcgg tggtggccgc cggcggcctg
     6541 cacatcgtcg gcaccgagcg gcacgagtcg cggcgcatcg acaaccagct gcgcggccgt
     6601 tccggccgcc agggcgaccc gggttcctcg cgcttctacc tgtcgctcga agacaacctg
     6661 atgcgcatct tcgcggccga ctgggtgcag cgcgtcatgg cgcgcatggg cctgaaggaa
     6721 gacgacatca tcgagtcgcc gctggtcacc aagcagatcg ccaacgcgca gcgcaaggtc
     6781 gaggcgcaca acttcgacat ccgcaagaac ctgctcgact tcgacgacgt caacaacgac
     6841 cagcgcaagg tcatctacca gcagcgcgac gagctgctcg aggccgacag cgtcaaggac
     6901 aacatcgacg gcatccgcca ggacgtggtg gcggcgatcg tcgagcgcca cgtgccggcc
     6961 aattcgatcg acgagcagtg ggacctcgcc ggcctggagg cggagctcgc cgccgagttc
     7021 ggcgtgcagg tgccgctgcg cgacatcgtc gcctcgcgca acgagatgga cgccgaacag
     7081 atcgcggacg aggtgcagca ggcgatcgcg cgcatgttcg acgagaagga aggcctggtc
     7141 ggcgccgaga cgatgcgcat gatcgagaag cacctgatgc tcaacgtgct cgaccagaac
     7201 tggaaggaac acctcgcgcg catggactac ctgcgccagg gcatccacct gcgcggctac
     7261 gcccagaagc agccgaagca ggaatacaag agcgaggcct tcctgctgtt ctcggacatg
     7321 ctggagaagg tcaagcgcga ggtcatcacg atgatcgcca aggtgcgcgt gcgcaccgag
     7381 gaagaggtgg ccgccgccga ggcgcaggag cgcgcgcgcg ccgaggcgat ggcgcggcag
     7441 atgcagttcc agcacgccga catgggcggc tacggcagcg ccgaggaagc cagccagacg
     7501 ccggagggcg cggcgctggc ggcgacgttg ccggccgcgg ccgcggcagt agccaaggtc
     7561 ggccgcaacg atccgtgccc gtgcggcagc ggcaagaagt tcaagcattg ccacggacag
     7621 ctggcctgat ccgacccggc atcgcgtggt cctggtggcg cgggcccgcc ggggcccacg
     7681 gccgcccgcg gtcgccggca cgcacgaggt aggctgcgtg cgcggcggcc ggcgcggccg
     7741 gcccatgctc ctccgatcga acagcggctt gaacgactcc cgtcccccgt cgcccgcagt
     7801 gcctgccgtc gaggtcgtcg ccggtgtcat ccgcgacccg cgcggccgcg tcctgctggc
     7861 gcgccgcacc gagggacggg acctcgccgg gttgtgggaa ttccccggcg gcaaggtcga
     7921 gccgggcgaa tccgcggatg cggcgctggc gcgcgaactg cacgaggaac tcggcatcga
     7981 tgccgaggtc ggcgcgccgc tgatcaccgt gccgcagcaa tatccgaaca agctgctgcg
     8041 cctggacgtg cgcatggtgc ggcgctggcg tggcagcgcg cgggggcagg aaggccaggc
     8101 gctcgcctgg gtgccgccgc acaagctgcc cgattacccg atgccgcccg ccgaccgccc
     8161 ggtggtcgcg gccctgctgc aaccggaccg ctacctggtc acgccggcac cgcccgcgga
     8221 cggggacgcg tggctgcagg cattgcggca ggcactcgcc gcgggcatcc gccgcgtgca
     8281 gctgcgtggc ggaggcggga tcgaaccgac gcgctggcgc gcgctcgtcg aggccgccat
     8341 ggccgcctgc cgagacgccg gcgccgacgt gctgctcaac gacgacatcg cgctcgcgcg
     8401 cgcgctcggc atcggcgtgc acctgcgcgc ggcgcggctg tccctgctcg acgcgcgtcc
     8461 gctcgatgcg gcttgcctgg tcggcgcgtc ctgccacgac ctcgatgagc tgcgccgggc
     8521 gcaggcgctc ggctgcgact tcgcggtgct cgggccggtg gcggcgaccg cctcgcaccc
     8581 cggagcggcg acgctcggct ggcacggctt cgccgccctg cgcgaggccg tttcgctgcc
     8641 cctgtatgcg atcggcggga tggccgccgc cgacatcgcc gcggcgcgcg cgcacggcgc
     8701 gcagggcgtc gccgccatcc gggcgctgtg gccggggttg ttgccgcagg cggacggggc
     8761 aggagcggcc tgagccgcgg ccgcgtcgcc gtcccggcgt cgcgtcgcga tccgcca
//
LOCUS       DATIQC010000271         2375 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_548512, whole genome shotgun sequence.
ACCESSION   DATIQC010000271 DATIQC010000000
VERSION     DATIQC010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548512"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..828)
                     /locus_tag="VLM17_05700"
     CDS             complement(<1..828)
                     /locus_tag="VLM17_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSR65083.1"
                     /translation="MPPSCNIAASLPQLAALRGAQVAMRCPGRNGRYGVELTYAQLDA
                     RSDAIAAGLARHGVVRGTRTVVMVRPTPEFFLLMFALFKAGAVPVLVDPGIDRRALRQ
                     CLDEAQAEAFIGIPLAHLARTLLRWAGSARVRITTGARAWLADATLAQVEGAGAGAAS
                     QLADTRPDDIAAILFTSGSTGVPKGVVYRHRHFAAQIAMLREAFALQPGGVDLPTFPP
                     FALFDPALGLTSVIPDMDPTRPAQADPRKLVRAIERFGVTQLFGSPALVGVLARHGAK
                     "
     gene            969..1340
                     /locus_tag="VLM17_05705"
     CDS             969..1340
                     /locus_tag="VLM17_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HSR65084.1"
                     /translation="MPHPCLSCGACCAQFRVGLPWSEAEPALGGRVPVALTEPLRAHE
                     LAMRGTSQARPRCIALDAEIGRRSRCTIHPQRPHACRDLVASWETGAPDAQCDKARMA
                     HGLPVLQPGDWGTAAGATPAA"
     gene            complement(1350..2288)
                     /locus_tag="VLM17_05710"
     CDS             complement(1350..2288)
                     /locus_tag="VLM17_05710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HSR65085.1"
                     /translation="MPTSLPDYPFTPHRLEVRPGISMAYLDEGPRDGEIVVMLHGNPS
                     WSYYWRHLVLGLRDPASGKAYRCIVPDHVGMGLSDKPDDGGGVRPPRAVGRYDYTLRS
                     RVEDLATLLDALGVTGPVTLAVHDWGGMVGIGWALRHLPQVRRLVILNTAAFPLPAAK
                     AMPWQLALGRDSRIGGWLIRHFNLFARGAAWFGTTRRLPAAVRRAYTAPYAGWENALA
                     TLRFMQDIPLREGDPAWPLVAEAGRRLHEFADRPVFIGWGLRDFVFDRHCLAAFTAAL
                     PRAEVHAFDDADHYVLEDKHAVLVPLVRDFLRRHPL"
BASE COUNT          363 a          851 c          876 g          285 t
ORIGIN      
        1 cttcgcgcca tgccgcgcca gcacgcccac cagcgccggc gaaccgaaca gctgggtcac
       61 cccgaagcgt tcgatcgcgc gcacgagctt gcgcggatcc gcctgcgcgg ggcgggtggg
      121 gtccatgtcg gggatgacgg acgtcaggcc gagcgcggga tcgaacaggg cgaacggcgg
      181 gaacgtcggc aggtcgacgc cgccgggctg cagcgcgaag gcctcgcgca gcatcgcgat
      241 ctgggcggcg aaatggcggt gccggtacac cacgcccttg ggcacgccgg tcgagccgct
      301 ggtgaacagg atcgcggcga tgtcgtcggg tcgggtgtcg gcgagttgcg acgccgcgcc
      361 cgcgcccgca ccctcgacct gtgcgagcgt cgcatcggcc agccacgccc gcgcgccggt
      421 ggtgatgcgg acacgcgccg aacccgccca gcgcaacagc gttcgtgcca ggtgcgcgag
      481 cggaatgccg atgaaggcct cggcctgcgc ttcgtccagg cactgccgca gcgcgcgcct
      541 gtcgatgccg gggtcgacca gcaccggcac cgcgcccgcc ttgaacagcg cgaacatcag
      601 caggaagaac tccggcgtcg gccgcaccat caccaccgtg cgggtgccgc gcacgacccc
      661 atgccgcgcc agcccggcgg cgatcgcgtc gctgcgcgca tcgagctggg cgtaggtcag
      721 ctccacccca taccgaccgt tgcggccggg gcaacgcatc gccacctgcg cgccgcggag
      781 ggcggcgagc tgcggcaggc tggcggcgat gttgcaggac ggcggcatcg cgccattgtc
      841 gccgagaagc ccgcccggcc cgcagcgccg cggagccgac gggccgtgcc agccttcgcc
      901 gccgtcgctt gcacccggcc cgcagaccgg cacaatcgcc gccgtcccgt tccatcgccg
      961 attcgcgcat gccgcatccg tgcctgtcct gtggcgcctg ctgcgcgcag ttccgcgtcg
     1021 gcctgccctg gtccgaggcc gagcctgcgc tcggcggccg cgtcccggtc gcgctgaccg
     1081 aaccgctgcg cgcgcacgaa ctggcgatgc gcggcacctc gcaggcgcgg ccgcgctgca
     1141 tcgcgctcga cgccgagatc gggcggcgca gccgctgcac gatccacccg caacggccgc
     1201 acgcctgccg cgacctggtt gcctcctggg aaaccggcgc gccggacgcg caatgcgaca
     1261 aggcgcggat ggcccacggg ctgccggtgc tgcagccggg ggactggggg acggcggcgg
     1321 gcgccacgcc ggcggcgtga tgcggcgtcc tacagcggat gccgccgcag gaagtcgcgg
     1381 accagcggca ccagcaccgc gtgcttgtct tccagcacgt aatggtcggc gtcgtcgaac
     1441 gcatgcacct cggcccgcgg cagggccgcg gtgaaggcag cgaggcagtg gcggtcgaac
     1501 acgaagtcgc gcaggcccca gccgatgaac accggccggt cggcgaactc gtgcaggcgg
     1561 cgaccggctt ccgccaccag cggccatgcg gggtcgcctt cgcgcagcgg gatgtcctgc
     1621 atgaagcgca aggtggcgag cgcgttctcc cagccggcgt agggcgcggt gtacgcgcgg
     1681 cgcacggcgg ccggcaaccg tcgcgtggtg ccgaaccacg ccgcgccgcg cgcgaacagg
     1741 ttgaagtggc ggatgagcca gccgccgatg cgcgaatcgc gaccgagcgc gagctgccac
     1801 ggcatcgcct tcgccgccgg cagcgggaac gcggcggtgt tgaggatcac cagccggcgc
     1861 acctgcggca ggtggcgcag cgcccagccg atgccgacca tcccgcccca gtcgtgcacc
     1921 gcgagggtga ccgggccggt gacgcccagc gcgtcgagca gggtggcgag gtcctcgacg
     1981 cgcgagcgca acgtgtagtc gtagcgcccc acggcacgcg gcgggcgcac gccgccaccg
     2041 tcgtcgggct tgtcggacag gcccatgccg acatggtcgg gcacgatgca gcggtaggct
     2101 tttccggagg ccggatcgcg caggcccagc accaggtgcc gccagtaata gctccacgac
     2161 ggattgccgt gcagcatcac gacgatttcg ccgtcgcggg ggccttcgtc gaggtaagcc
     2221 atcgaaatgc cggggcgcac ttcgaggcgg tggggggtga acgggtaatc gggaagagaa
     2281 gtgggcatgg ccagattcag acaagcacgg caacgagcac tgcaacgatg aaaggccttt
     2341 cgtcgtcgga aagatcgatt tcgatcggca ggaac
//
LOCUS       DATIQC010000272         7888 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_548566, whole genome shotgun sequence.
ACCESSION   DATIQC010000272 DATIQC010000000
VERSION     DATIQC010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7888
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_548566"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..1257)
                     /gene="ubiH"
                     /locus_tag="VLM17_05715"
                     /gene_synonym="visB"
     CDS             complement(52..1257)
                     /gene="ubiH"
                     /locus_tag="VLM17_05715"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016945077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008681 - 2-octaprenyl-6-methoxyphenol
                     hydroxylase activity [Evidence IEA];
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HSR65086.1"
                     /translation="MTAARHDVVIVGGGLVGASLAIALDRIGVDVALVEATPAGALPA
                     VFDERNLSFAEATVNALGALGVMAKLRAPAAPIRRIHVSRAGDFGRARFEAADYGREA
                     FGQVVVARDFGEALEARLAELRRLARYRPARFVGFADVDARLRGVRLVDGDGERMLHA
                     RLVVGADGSLSGVRDALSIGHQAHDYGQALFVARIRAERAPDGTAWERLGPHGPTALL
                     PRGDRHHGLVHGVAADEADAVAALGDAAFLARVQDAIGWRVGRLLAAGPRSRHPALRV
                     VADRLVAARAVLVGNAAQSLHPIGAQGFNLGLRDALTLAELVETRGGDPGDDALLAAY
                     AARRAADRRRTLAFSDGVARLSANDAPLLRPLRSLGLLALDRLPALQAALVGGAMGYR
                     GDVPALCRA"
     gene            1322..1894
                     /locus_tag="VLM17_05720"
     CDS             1322..1894
                     /locus_tag="VLM17_05720"
                     /inference="COORDINATES: protein motif:HMM:NF042461.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6580 family putative transport protein"
                     /protein_id="HSR65087.1"
                     /translation="MNRAASASFASGPLVLAGLIVLAALSRLLPHPPNFSPVEAVALF
                     GGAYFASKRWSLLVPLAAMLLSDFALGLVRGGLYLDYFTSAGFWLQYACIALLAVLGF
                     GLRGRVGGARVLAYSLAGSGLFFLVTNFGAWIGSPMYPQTIGGLGAAYAAGIPFFQWT
                     VLGTLSYAALLFGGFALLRERLPALRAQTV"
     gene            1977..2531
                     /locus_tag="VLM17_05725"
     CDS             1977..2531
                     /locus_tag="VLM17_05725"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HSR65088.1"
                     /translation="MGNRLSKIYTKTGDDGTTGLGDGTRVAKDSARVTAYGTVDEANS
                     AIGLLLAGEVADDVRALLTTVQHQLFDLGGELCIPGHAAIFDADVEALERALDGFNAG
                     LPALKEFILPGGGEAAARCHLARTIVRRAERETVTLARHDAVRPEPIRYLNRLSDLLF
                     VLARELARASGHGEVLWKHERRKA"
     gene            2534..3451
                     /locus_tag="VLM17_05730"
     CDS             2534..3451
                     /locus_tag="VLM17_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HSR65089.1"
                     /translation="MRFYTHPACLAHDTGPGHPERPERVVAVLEALREAFGAASDWHE
                     APRATREQLLRAHAPALVELVLDTTPAGRLPLDPDTMLSPGSAEAALRAAGAAVAAVD
                     AVLGEGGGTRAFCAVRPPGHHATRDTAMGFCLFNSVAVAALHALDAHGLQRVAIADFD
                     VHHGNGTQAIFAGEPRVLFASSHQWPLYPDSGQARERGVGNVFNAPLPPAAGGGAFRA
                     AWRDILLPALDAFAPQLLLVSAGFDAHARDPLAQLQLGGEDYGWLTRELVALADRHAG
                     GRVVSLLEGGYDLEALRESSVAHVGALLA"
     gene            complement(3466..3879)
                     /gene="msrB"
                     /locus_tag="VLM17_05735"
     CDS             complement(3466..3879)
                     /gene="msrB"
                     /locus_tag="VLM17_05735"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HSR65090.1"
                     /translation="MATDPRARSDAEWREALTPEQYAVCRCSATEPAFTGKYWNHKQA
                     GTYTCAACGAPLFESGAKYDSGSGWPSYTRPVGPGAVSEHADESHGMRRVEVKCARCE
                     SHLGHVFPDGPRPAGLRYCINSASLGFDPAATGGS"
     gene            3941..6532
                     /gene="lptD"
                     /locus_tag="VLM17_05740"
     CDS             3941..6532
                     /gene="lptD"
                     /locus_tag="VLM17_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005412301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HSR65091.1"
                     /translation="MGQASGHFPPTDARVRPAFRLLPLPFFIALSLAAQAAEERPGEW
                     KLCPVADAVPAFPDAQQPTGKPQARVQLPTDISGDQLSGTDTQPQFSGNVVLRRGDQF
                     MGAQNLTINNDTGEYVAQGSVRYRDSSMRLVADRGEGNQNTDTHTLQDVQYQLMSRRG
                     NGGADHIQMQGTQGALFGSTYSTCPPDQRSWELRAQEIDVDTDKGLGVAHNATLRVGR
                     VPVLYVPWFQFPIDDRRRTGLLYPAISLSGRNGFDWRQPIYLNLAPNYDATLVPRFMS
                     DRGLQLGGEFRYLVPGGAGILQAEFLPNDKLTDRKADEELAEFLQHGYPLENRRADNR
                     GLFRFVGHQNLDDTWRAAANITWISDPRYFEDFSNHINGLTPYSLQSSIGVYGTGDNW
                     TASLSADHQQLADYTLSRNVLPYNRLPRATFHLDEPLQPWLHAGVYTEAVRFQHERAP
                     ELADDRQRFGGSRIDVKPWVSLPLEGASWFLTPTLAWRYTGYRLSSELADQVALSHAR
                     QYAIDNGLFTRLTGPQQNALVASLAPQLRDASPSRSVPIGSLDMGLYFDRETDLGGKS
                     YLQTLEPRLFYLRVPYENQDDLPLFDTRPLTFSWGQLFRDNRYTGADRQTDANQLTLA
                     LTSRLIRQADGREKLSASIGQIRYFDDSRVTAVPGETPVERGKSAWVVDANYAVNDRW
                     TLGASYQWDPKFRRQDLASVHTRYLVGDDGVVNLGYRYRRNLLEQVDLSFLYPLTPAW
                     SLVGRYYYSLYNNPVATPQNPVVGKPGLLEGIAGIQWDSCCVAMRLVGRRYIHNREGQ
                     LDNAIEFQFELKGLGAAGPDTESRLRRAILGYYREDLYLVPPNDVDRAAGNDSNGVDP
                     TVPDLDE"
     gene            6529..7881
                     /locus_tag="VLM17_05745"
     CDS             6529..7881
                     /locus_tag="VLM17_05745"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003472723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSR65092.1"
                     /translation="MNRLLACLLAFAATVAAPLHAQQATPAPAVQPLDSIAAVVDEDV
                     ILRSELDRAVQNVLDQYAQHPEQLPPRDVIERQVLERMILVRLQVARAADTGIRVSDQ
                     QVDGAISGIARQNNMSEDQLRAKVAQQGQSFAEFRDSVRDELTIQRLRQQFAQTRIAV
                     SDAEVDAALAAQAGDKQYHLANLLVALPEGATPEQIATGQKKIEGIKDLLDKGSMDFQ
                     AAAVRYSDGQNALEGGDLGWRSLDEIPTAFANAIRALQPGQVMGPVRGASGFQLVKLV
                     EVRDASQAGPQMVAQYHARHILVRTGEGGMDDAAAKAKIDTLAARIAGGADFQQLARE
                     NSQDVNSAPSGGDLGWFTQDTYGPEFGAQVAALQDGQVSAPFRSQAGWHIVQRIGTRQ
                     ADVGNENRRAQVRESIGQRKLEDEWTRYLREMRGEAYVDIRTGASQAPASDAGTKPAG
                     "
BASE COUNT         1139 a         3020 c         2707 g         1022 t
ORIGIN      
        1 cgccgacgac gcccgcgccc accaccaccg catcgagccg gccgcgcgcg ctcatgcgcg
       61 gcacagcgcc ggaacgtcgc cgcggtagcc catcgcgccg ccgaccagcg ccgcctgcag
      121 cgcgggcagg cggtcgagcg cgagcaggcc gaggctgcgc agcgggcgca gcagcggcgc
      181 gtcgttcgcg gacaacctcg ccactccgtc ggagaacgcg agggtgcgcc ggcggtccgc
      241 cgcgcgacgc gctgcgtacg cggcgagcag cgcgtcgtcg ccggggtcgc cgccgcgcgt
      301 ttcgaccagt tcggcgagcg tgagcgcgtc gcgcaggccg aggttgaacc cctgcgcgcc
      361 gatcggatgc agcgactgcg ccgcattgcc caccagcacc gcgcgcgccg cgaccaggcg
      421 atcggcgacc acgcgcagcg ccggatggcg gctgcgcggg ccggcggcga gcaggcgccc
      481 gacccgccag ccgatggcgt cctgcacgcg cgccaggaag gccgcgtcgc cgagcgcggc
      541 caccgcgtcg gcctcgtcgg cggcgacgcc gtgcaccaac ccatggtggc ggtcgccgcg
      601 cggcagcagc gcggtcgggc cgtgcgggcc gagccgctcc cacgcggtgc cgtcgggcgc
      661 gcgctcggcg cggatccggg cgacgaacag cgcctgcccg tagtcgtggg cctggtggcc
      721 gatggacagc gcgtcgcgca cgccgctcag gctgccgtcg gcgccgacga ccagccgcgc
      781 gtgcagcatg cgttcgccgt cgccatcgac gaggcgcacg ccacgcaggc gggcgtcgac
      841 gtcggcgaaa ccgacgaagc gcgccggccg gtagcgcgcc aggcggcgca gttccgccag
      901 gcgcgcctcc agcgcctcgc cgaaatcgcg cgccaccacc acctggccga atgcctcgcg
      961 cccgtagtcg gcggcctcga agcgggcgcg gccgaagtcg ccggcgcggc tgacatggat
     1021 gcggcggatc ggcgccgccg gcgcgcgcag cttcgccatc acgccgagcg cgcccagggc
     1081 attgacggtc gcctcggcga agctgaggtt gcgctcgtcg aacaccgccg gcagcgcgcc
     1141 ggcgggcgtc gcctcgacca gcgcgacgtc cacgccgatg cggtcgagcg cgatcgccag
     1201 gctggcgccg accaggccgc cgcccacgat caccacgtca tgtcgcgctg ccgtcatcgc
     1261 atggggccgc cggtggggtg cgttatgcta gcggttccgc cgcatcgtcc ccagcacacc
     1321 gatgaatcgc gccgcatccg cctccttcgc ctccggcccg ctggtcctcg ccggcctgat
     1381 cgtcctcgcc gcgctcagcc gcctgctgcc gcatccgccg aacttctcgc cggtggaggc
     1441 ggtcgcgctg ttcggcggcg cctacttcgc ctccaagcgc tggtcgctgc tggtgccgct
     1501 ggcggcgatg ctgctgtcgg acttcgcgct cggcctggtc cgcggcggcc tctacctcga
     1561 ctacttcacc agcgccggct tctggctgca gtacgcctgc atcgcgctgc tggccgtgct
     1621 cggcttcggc ctgcgcggcc gcgtcggtgg cgcgcgcgta ctggcctact cgctggccgg
     1681 gtcgggcctg ttcttcctgg tcaccaattt cggcgcgtgg atcggctcgc cgatgtatcc
     1741 gcagacgatt ggcgggctgg gcgccgccta tgccgcgggc atcccgttct tccagtggac
     1801 ggtgctcggc acgctgtcct atgccgcgct gctgttcggc ggattcgccc tgctgcgcga
     1861 gcgcctgccg gcgctgcgcg cgcagacggt ctgaaggccg ggggctgggc gggagaggtc
     1921 ttgaacaccc gaaccgcgcc cgttcttcct gcgagcccgt agccccaggt ccctcaatgg
     1981 gcaaccgtct ttccaagatc tacacgaaga ccggcgacga cggcacgacc ggcctgggcg
     2041 acggcacccg cgtggccaag gattcggcgc gcgtcaccgc ctacggcacc gtcgacgagg
     2101 cgaactcggc gatcgggctg ctgctggccg gcgaggtcgc cgacgacgtc cgcgcgctgc
     2161 tgaccaccgt gcagcaccag ctgttcgacc tcggcggcga gctgtgcatt ccgggccatg
     2221 cggcgatctt cgacgccgac gtcgaggccc tcgaacgcgc gctcgacggt ttcaacgccg
     2281 gcctgccggc gctgaaggag ttcatcctgc ccggcggcgg cgaggccgcg gcgcgctgcc
     2341 acctcgcccg caccatcgtg cgccgcgccg agcgcgagac ggtcaccctc gcccgccacg
     2401 acgcggtgcg gccggagccg atccgctacc tcaaccgcct gtcggacctg ctgttcgtgc
     2461 tcgcccgcga gctggcgcgc gccagcggcc acggcgaagt gctgtggaag cacgaacgcc
     2521 gcaaggcgtg agcatgcggt tctacacgca cccggcgtgc ctggcgcacg acaccgggcc
     2581 ggggcacccg gagcggccgg aacgcgtggt ggcggtgctc gaggccctgc gcgaagcctt
     2641 cggcgctgcg tccgactggc acgaggctcc gcgcgcgacg cgcgaacaac tgttgcgcgc
     2701 gcatgcgccg gcgctcgtcg agctggtgct ggacacgacg ccggcggggc ggttgccgct
     2761 cgatccggac acgatgcttt cgcctggatc ggccgaggcc gcgctgcgcg cggccggcgc
     2821 ggcggtcgcc gccgtcgacg cggtgctcgg cgaaggcggc ggcacgcggg ccttctgcgc
     2881 cgtgcgcccg cccggccacc acgccacccg cgacaccgcg atgggcttct gcctgttcaa
     2941 cagcgtcgcc gtcgccgcgc tgcatgcgct cgacgcccac ggactgcagc gcgtcgccat
     3001 cgccgatttc gacgtgcacc acggcaacgg cacccaggcg atcttcgccg gcgaaccgcg
     3061 cgtgctcttc gccagctcgc accagtggcc gctgtatccc gacagcggcc aggcgcgcga
     3121 gcgcggcgtc ggcaacgtgt tcaacgcgcc gctgccgccc gcggccggcg ggggcgcgtt
     3181 ccgcgcggcc tggcgcgaca tcctgctgcc cgcgctcgac gcgttcgcgc cgcaactgct
     3241 gctggtgtcg gccgggttcg acgcgcacgc gcgcgacccg ctcgcccagt tgcagctggg
     3301 cggggaggac tacggctggc tgacccggga actggtcgcg ctcgccgacc gccacgccgg
     3361 cggccgcgtg gtgtcgctgc tggagggcgg ctacgacctc gaagcgctgc gcgagagcag
     3421 cgtcgcccac gtcggcgcgc tgctcgcctg aggcctccgg cccggtcagc tgccgccggt
     3481 cgccgcggga tcgaagccga gcgaggcgga attgatgcag tagcgcaggc cggcgggccg
     3541 cgggccgtcg gggaagacgt ggccgaggtg cgactcgcac cgtgcgcact tcacctcgac
     3601 ccgacgcatc ccgtggctct cgtcggcgtg ctcgctgacg gcgccgggcc cgacgggccg
     3661 ggtgtagcta ggccagcccg agcccgagtc gtacttcgcg cccgactcga acaggggcgc
     3721 cccgcaggcc gcgcaggtgt aggtgccggc ctgcttgtgg ttccagtact tgccggtgaa
     3781 ggccggctcg gtggcggaac agcggcacac ggcgtactgc tcgggggtca gcgcctcgcg
     3841 ccattcggcg tcgctgcgcg cgcggggatc ggtcgccatg cgcgggctct ccatgtgggc
     3901 cttccggcga catggtgcct gcattgccgc cctacaaggg atggggcaag ctagcggcca
     3961 ttttccgccg acggatgccc gcgtgcgccc tgccttccgc ctgctgccgc tgccgttctt
     4021 catcgcgctg tccctcgccg cccaggccgc cgaggagcgc cccggcgagt ggaagctgtg
     4081 cccggtggcc gatgcggtcc cggccttccc cgacgcccag cagccgaccg gcaagcccca
     4141 ggcgcgcgtg cagctgccga ccgacatctc cggcgaccag ctcagcggca ccgataccca
     4201 gccgcagttc agcggcaacg tcgtcctgcg ccgcggcgac cagttcatgg gcgcgcagaa
     4261 cctgaccatc aacaacgaca ccggcgagta cgtcgcgcag ggcagcgtgc gctaccggga
     4321 ctcgtcgatg cggctggtcg ccgaccgcgg cgaaggcaac cagaacaccg acacccacac
     4381 cctgcaggac gtgcagtacc agctgatgtc gcggcgcggc aacggcggcg ccgaccacat
     4441 ccagatgcag ggcacgcagg gcgcgctgtt cggttcgacc tattccacct gcccgccgga
     4501 ccagcgcagc tgggagctcc gcgcgcagga gatcgacgtc gacaccgaca agggcctggg
     4561 cgtggcgcac aacgcgacgc tgcgcgtggg ccgcgtgccg gtgctgtacg tcccctggtt
     4621 ccagttcccg atcgacgacc gccgccgcac cggcctgctg tatccggcga tcagcctgtc
     4681 gggccgcaac ggcttcgact ggcgccagcc gatctacctc aacctcgcgc cgaactacga
     4741 cgccaccctg gtcccgcgct tcatgtccga ccgcggcctg cagctcggcg gcgaattccg
     4801 ctacctcgtg cccggcggcg ccggcatcct gcaggccgag ttcctgccca acgacaagct
     4861 caccgaccgc aaggccgacg aggaactcgc cgagttcctg cagcacggct acccgctcga
     4921 gaaccggcgc gccgacaacc gtggcctgtt ccgcttcgtc ggccaccaga acctcgacga
     4981 cacctggcgc gccgccgcca acatcacctg gatcagcgac ccgcgctatt tcgaggactt
     5041 cagcaaccac atcaacgggc tgacgccgta ttcgctgcag agctcgatcg gcgtctacgg
     5101 caccggcgac aactggaccg cctcgctgag cgcggaccac cagcagctcg ccgactacac
     5161 gctcagccgc aacgtgctgc cctacaaccg cctgccgcgc gcgaccttcc acctggacga
     5221 gccgctgcag ccgtggctgc atgcgggcgt ctacaccgaa gcggtgcgtt tccagcacga
     5281 acgcgcgccc gaactggccg acgaccggca gaggttcggc ggcagccgca tcgacgtgaa
     5341 accatgggtc agcctgccgc tggaaggcgc cagctggttc ctcaccccga ccctggcctg
     5401 gcgctacacc ggctaccggc tgagcagcga actggccgac caggtcgcgc tcagccacgc
     5461 caggcagtac gcgatcgaca acggcctgtt caccaggctc accggccccc agcagaacgc
     5521 gctggtcgcc agcctggcac cgcagctgcg cgacgccagc cccagccgca gcgtgccgat
     5581 cggctcgctg gacatgggcc tgtatttcga ccgcgagacc gacctcggcg gcaagagcta
     5641 cctgcagacg ctggagccgc gcctgttcta cctgcgcgtg ccctacgaaa accaggatga
     5701 cctcccgctg ttcgacaccc gcccgctgac cttcagctgg ggccagctgt tccgcgacaa
     5761 ccgctacacc ggcgccgatc gccagaccga cgccaaccag ctcaccctgg ccctcaccag
     5821 ccggctgatc cgccaggccg acggacgcga gaagctcagc gccagcatcg gccagatccg
     5881 ctacttcgac gactcgcgcg tcaccgcggt gccgggcgaa accccggtcg agcgcggcaa
     5941 gtcggcctgg gtcgtcgacg ccaactacgc ggtcaacgac cgctggacgc tcggcgcgtc
     6001 ctaccagtgg gatccgaagt tccggcgcca ggacctggcc agcgtgcaca cccgctacct
     6061 ggtcggcgac gacggcgtgg tcaacctcgg ctaccgctac cgccgcaacc tgctcgagca
     6121 ggtcgacctg tccttcctct acccgctgac gccggcgtgg agcctggtcg gccgctacta
     6181 ctactcgctg tacaacaacc cggtggcgac gccgcagaac ccggtggtcg gcaagcccgg
     6241 gctgctcgaa ggcatcgccg gcatccagtg ggacagctgc tgcgtggcca tgcgcctggt
     6301 cggccgccgc tacatccaca accgcgaggg ccagctcgac aacgcgatcg aattccagtt
     6361 cgagctgaag ggcctcggcg cggccggccc ggacacggag tcgcgcctgc gccgtgctat
     6421 cctcgggtac taccgcgagg acctctacct cgtgccgccg aacgacgtcg accgcgccgc
     6481 gggcaacgac agcaacggcg tcgaccccac cgtccccgac ctcgacgaat gaacagactc
     6541 ctcgcctgcc ttctcgcctt cgcggcgacc gtcgccgcgc cgctgcacgc acagcaggcc
     6601 acgccggcgc ccgcggtgca gccgctcgac agcatcgccg cggtggtcga cgaggacgtg
     6661 atcctgcgca gcgaactcga ccgcgcggtc cagaacgtcc tggaccagta cgcccagcat
     6721 cccgagcagc tgccgccacg cgacgtgatc gagcgccagg tgctcgagcg catgatcctg
     6781 gtgcgcctgc aggtcgcgcg cgccgccgac accggcatcc gcgtcagcga ccagcaggtc
     6841 gacggcgcga tctccggcat cgcccgccag aacaacatga gcgaggacca gctgcgcgcg
     6901 aaggtcgccc agcagggcca gtccttcgcc gaattccgcg attcggtgcg cgacgagctg
     6961 accatccagc gcctgcgcca gcagttcgcg cagacgcgca tcgcggtgag cgatgccgag
     7021 gtcgacgccg cgctcgccgc gcaggccggc gacaagcagt accacctcgc caacctgctg
     7081 gtggcgctgc ccgaaggcgc gacgcccgag cagatcgcca ccggccagaa gaagatcgag
     7141 ggcatcaagg acctgctcga caagggctcg atggacttcc aggccgcggc cgtgcgttat
     7201 tccgacggcc agaacgcgct ggaaggcggc gacctcggct ggcgcagcct cgacgagatc
     7261 ccgaccgcgt tcgccaacgc gatccgcgcc ctgcagccgg gccaggtcat gggcccggtg
     7321 cgcggcgcca gcggcttcca gctggtcaag ctggtggaag tgcgcgatgc cagccaggcc
     7381 gggccgcaga tggtcgccca gtaccacgcg cgccacatcc tggtccgcac cggcgagggc
     7441 ggcatggacg acgcggcggc gaaggcgaag atcgatacgc tggccgcgcg catcgccggc
     7501 ggcgccgatt tccagcagct cgcgcgcgag aactcgcagg acgtcaacag cgcgccttcc
     7561 ggcggcgacc tcggctggtt cacccaggac acctacggcc cggaattcgg cgcgcaggtc
     7621 gcggcgctgc aggacggcca ggtctccgcg ccgttcagga gccaggccgg ctggcacatc
     7681 gtccagcgca tcggcacgcg ccaggcggac gtcggcaacg aaaaccgccg cgcacaggtg
     7741 cgcgagagca tcggccagcg caagctcgag gacgagtgga cgcgctacct gcgcgagatg
     7801 cgcggcgagg cctacgtcga catccgcacc ggcgccagcc aggcgccggc gagcgacgcc
     7861 ggcaccaagc cggccggctg acatgcgg
//
LOCUS       DATIQC010000273         1896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_89096, whole genome shotgun sequence.
ACCESSION   DATIQC010000273 DATIQC010000000
VERSION     DATIQC010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89096"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1101
                     /locus_tag="VLM17_05750"
     CDS             <1..1101
                     /locus_tag="VLM17_05750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR65093.1"
                     /translation="ADDGYAIFGSLAAIQALHEQQAPHARCVILIEACEESGSYDLPA
                     YVDHLADRIGKPSLVVCLDSGCGNYEQLWCTTSLRGLAGGNFTVKVLEEGVHSGDASG
                     IVPSSFRLLRQLLSRIEDADTGRILVDGLHVDIPADRLAQAKQVADVLGSAVYDKFPF
                     LPGMTPMGDALPELVLNRTWRPALSVTGVDGMPPLSSAGNVLRPCTSVKLSLRLPPTL
                     DGKRAGELLKDALLRDPPNGAQVSLELEKASTGWNAPALAPWLQRAIESASQEFFGRP
                     AMYMGEGGTIPFMGMLGEKFPGAQFMITGVLGPHSNAHGPNEFLHIPMGKKVTACVAR
                     VIAEHHAASLRGETSGSAALAGQSQHGNHGCC"
     gene            1105..1434
                     /locus_tag="VLM17_05755"
     CDS             1105..1434
                     /locus_tag="VLM17_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSR65094.1"
                     /translation="MTRGPVELVQFLHAYEALGDGWVALLLTGVLAGFVARFATSDAR
                     RIGLLPTCALGVAGALLGREGGHALGLALATPNPRFLAALAGSLALAVAGRLLVRRAR
                     PRVPPAA"
     gene            1516..1776
                     /locus_tag="VLM17_05760"
     CDS             1516..1776
                     /locus_tag="VLM17_05760"
                     /inference="COORDINATES: protein motif:HMM:NF016141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSR65095.1"
                     /translation="MFDGILGYIVGGAVIGILARLLKPGADPLGWIMTIVLGIAGAVA
                     GSYLSGMFGVSGRYAQWGVALVCAILLLFLYEMARRKPAAAA"
BASE COUNT          248 a          691 c          671 g          286 t
ORIGIN      
        1 gcggacgatg gctacgcgat ctttggctcg cttgccgcga tccaggcgct gcatgagcag
       61 caggcgccgc acgcgcgttg cgtgatcctg atcgaagcct gcgaggagtc cggcagctac
      121 gacctgcccg cctacgtcga ccacctcgcg gaccggatcg gcaagccgtc gctggtcgtc
      181 tgcctggact ccggctgcgg caactacgag cagctgtggt gcacgacctc gctgcgcggc
      241 ctcgccggcg gcaacttcac cgtcaaggtg ctcgaggaag gcgtgcactc gggcgatgcg
      301 tccggcatcg tgccgtcgag cttccgcctg ctgcgccagc tgctctcgcg catcgaggac
      361 gcggacacgg ggcgcatcct cgtcgacggc ctgcacgtcg acattcccgc cgaccggctg
      421 gcgcaggcga agcaggtggc ggacgtgctc ggcagcgcgg tgtacgacaa gttcccgttc
      481 ctccccggca tgacgccgat gggcgacgcg ctgcccgaac tcgtgctcaa ccgcacctgg
      541 cgccccgcgc tgtcggtgac cggcgtggac ggcatgccgc cgctgtcgtc ggcgggcaac
      601 gtgctgcgtc cctgcacgtc ggtgaagctg tcgctgcgcc tgccgcccac gctcgacggc
      661 aagcgcgcgg gcgagttgct gaaggacgcg ctgctgcgcg atccgccgaa cggcgcgcag
      721 gtgtcgctgg agctggaaaa ggcctccacc ggctggaacg cgcccgcact cgcgccgtgg
      781 ctgcaacggg cgatcgaatc ggccagccag gaattcttcg gcaggccggc gatgtacatg
      841 ggcgaaggcg gcacgattcc gttcatgggc atgctcggcg agaagttccc cggcgcgcag
      901 ttcatgatca ccggcgtgct cgggccgcac tcgaacgcgc acgggccgaa cgagttcctg
      961 cacatcccga tgggcaagaa ggtcaccgcc tgcgtggcgc gggtgattgc cgagcaccac
     1021 gcggccagcc tgcgcggcga gaccagcggc tccgccgcgc tggccggcca gtcgcagcat
     1081 ggcaaccacg gctgctgctg agccatgacc cggggcccgg tcgaactggt ccagttcctg
     1141 cacgcctacg aggcgctcgg cgatggctgg gtcgccctgc tgctgacggg cgtgctggcg
     1201 ggcttcgtcg cccgcttcgc caccagtgac gcgcggcgga tcggcctgct gccgacctgc
     1261 gcgctcggcg tcgccggcgc actgctgggg cgcgaaggcg gccacgccct ggggctggcg
     1321 ctggccacgc ccaacccgcg cttcctcgcc gccctggccg gcagcctggc gctggccgtc
     1381 gccggccggc tgctggtccg gcgcgcccgt ccgcgggtcc cgccggccgc ctgacgcgcc
     1441 gcccggaaac gggctaggat gcccgcgcaa ttccccccac atgcagtccc ccacaccacc
     1501 ctggaggagc acggcatgtt cgacggcatc cttggctaca tcgttggcgg cgcggtcatc
     1561 ggcatcctgg cgcgcttgct caagcccggc gcggatccgc tcggctggat catgaccatc
     1621 gtgctgggca tcgcgggcgc ggtggccggc agctacctga gcggcatgtt cggcgtcagc
     1681 gggcgctacg cgcagtgggg cgtggcactc gtctgcgcca tcctgctgct gttcctgtac
     1741 gaaatggcgc ggcgcaagcc ggcggccgcg gcctgacgac ggccggttcg aggaaaacgc
     1801 cccgctcgcg gggcgttttc ctttgacggg tcccccacgc cgccggcggg gtcagccgcc
     1861 ggtgcgcccg tacacgtcct cgtagcgcac gatgtc
//
LOCUS       DATIQC010000274         3857 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_618996, whole genome shotgun sequence.
ACCESSION   DATIQC010000274 DATIQC010000000
VERSION     DATIQC010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618996"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2162
                     /gene="rlmKL"
                     /locus_tag="VLM17_05765"
     CDS             <1..2162
                     /gene="rlmKL"
                     /locus_tag="VLM17_05765"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008990 - rRNA
                     (guanine-N2-)-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HSR65096.1"
                     /translation="KFFASCGKGLEYLLVDELLALGCAKATATVAGANAEGSLRDAQR
                     AVLWSRLASRVLWPIAEFDCPDEHALYAGAAAVAWQEHLRPGQTLAVDAHVSGSAITH
                     ARYAAQRVKDAVVDTLRAQTGARPDVDLESPDLRLNLVVRKGRALLSVDLGGGPLHRR
                     GWRREQGEAPLKETLAAAMLLRGDWPRLYREGGSLLDPMCGSGTLLVEGALMAADVAP
                     GLRRHGDAVPSRWAWFDPVAWQGLRAEAQARAAAGLAALRPAFFGRDVDPHAIRAARA
                     NAEAAGLARSIDWQVADIARLPAEAGHFGTAGAASRGLVACNPPYDLRLAADPALYRA
                     LGDALKASVPDWRASLLCGSNDLAHATGLRAAKAYQLFNGAIECTLLVADPVRMATRA
                     RDDAPAVLSDGATMVANRLRRNLRKLKSWRDREGVTCFRAYDADLPEYAAAIDVYATD
                     EDAPRTFLHVQEYAAPAEIPEDVQRRRLRDLLAAAREVFGVPREQVALKTRARGKGGS
                     KYGQFDTRGEFLVVREGRARLKVNLFDYLDTGLFLDHRPMRLRLADEAQDARFLNLFG
                     YTGAATVQAGLGGARQTTTVDLSATYLEWCADNLRENDLGGTRHRLVQADALAWLEAD
                     THDYDLVFCDPPTFSNSKRARDFDVQASHVRLLRAAVARLSADGVLYFSNNYRRFRMD
                     EAAVAGFARCEEITAQTIPPDFARDARIHRCWRLRRA"
     gene            2277..3137
                     /locus_tag="VLM17_05770"
     CDS             2277..3137
                     /locus_tag="VLM17_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HSR65097.1"
                     /translation="MSTTPAGTDARVIRSLRGMPASDGAGVKLTRVIGTPQLDMLDPF
                     LMLDEFGTDRAEDYLAGFPDHPHRGFETVTYMLDGRMRHRDNHGNEGLLVPGSVQWMT
                     AGRGLVHSEMPEQQEGRMRGFQLWVNLPASEKMAAPRYQEFAPERIPVVTPQAGVEVK
                     VIAGVVDGTRGPIEQPATDPLYLDIALAPQAAWQYALPEGHNAFAYVFEGAATVGEGD
                     VARALETHALGVLGGGERFAVRAGSEGARLILVAGRPLREPVARYGPFVMNTREQVMQ
                     AFVDFQEGRF"
     gene            complement(3170..3679)
                     /locus_tag="VLM17_05775"
     CDS             complement(3170..3679)
                     /locus_tag="VLM17_05775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65098.1"
                     /translation="MHTTTLLRTRPVAGPLLSGLLLGGLLLSGLLLSGTARAQEASAC
                     PQLPADANLTWNHRPSGDSDLCLAQRADGSEAFGLYISPKPSFDPARPDRAEQGQVDG
                     QALYWYRAELAAQPGVEARETVLTLPDGRSAHIWLQAPNADALAASLQLVQGLHFAPG
                     HGDAQVAGQ"
BASE COUNT          531 a         1401 c         1421 g          504 t
ORIGIN      
        1 tgaaattctt cgccagctgc ggcaagggcc tcgaatacct gctcgtcgac gagctgctcg
       61 cgctcggctg cgcgaaggcg accgcgacgg tggccggcgc caacgccgaa ggcagcctgc
      121 gcgacgcgca gcgcgcggtg ctgtggtcgc ggctggccag ccgcgtgctg tggccgatcg
      181 cggaattcga ctgccccgac gagcacgcgc tgtatgccgg cgcggcggcg gtggcgtggc
      241 aggaacacct gcggccgggc cagacgctgg cggtcgatgc gcacgtctcc ggcagcgcga
      301 tcacccatgc gcgctacgcc gcgcagcggg tcaaggacgc ggtcgtcgac accctgcgcg
      361 cgcagaccgg cgctcgcccg gacgtcgacc tcgaatcgcc cgacctgcgc ctcaacctgg
      421 tcgtgcgcaa ggggcgcgcc ctgttgtcgg tggacctcgg cggcgggccg ctgcaccggc
      481 gcggctggcg ccgcgagcag ggcgaggccc cgctgaagga aacgctggcg gcggcgatgc
      541 tgctgcgcgg cgactggccg cgcctgtatc gagaaggcgg ctcgctgctg gatccgatgt
      601 gtggcagcgg cacgctgctc gtcgaaggcg cgctgatggc ggcggacgtc gcgcccgggt
      661 tgcggcggca tggcgatgcc gtgccgagcc gatgggcctg gttcgatccg gtcgcatggc
      721 agggcctgcg cgcggaggcg caggcgcgcg ccgcggcggg cctggcggcg ctgcgcccgg
      781 cgttcttcgg ccgcgatgtc gacccgcacg cgatccgcgc ggcgcgtgcc aatgccgagg
      841 cggccggcct cgcgcggagc atcgactggc aggtggcgga catcgcccgg ctccccgcgg
      901 aagcaggcca tttcggcacg gcgggcgccg cgtcgcgcgg cctcgtcgcc tgcaatccgc
      961 cctacgacct gcgcctggcc gccgatcccg cgctgtatcg cgcgctcggc gacgcattga
     1021 aggcgagcgt gccggactgg cgcgccagcc tgctgtgcgg cagcaacgac ctcgcgcacg
     1081 cgaccggcct gcgcgcggcg aaggcctacc agctgttcaa cggcgcgatc gaatgcacgc
     1141 tgctggtggc cgaccccgtg cgcatggcga cgcgcgcgcg cgacgacgcg ccggcggtgc
     1201 tgtctgacgg cgcgacgatg gtcgccaacc gcctgcgccg caacctgcgc aagctgaaaa
     1261 gctggcgcga ccgcgagggc gtcacctgtt tccgcgccta cgacgccgac ctgcccgagt
     1321 acgcggcggc gatcgacgtc tacgccaccg acgaagatgc accgcgcacc ttcctgcacg
     1381 tgcaggagta cgccgcgccg gcggagatcc cggaagacgt gcagcgccgc cggctgcgcg
     1441 acctgctcgc cgccgcgcgc gaggtgttcg gcgtgccgcg cgaacaggtc gcgctcaaga
     1501 cccgcgcgcg cggcaagggt ggaagcaagt acgggcagtt cgacacgcgc ggcgagttcc
     1561 tggtcgtgcg cgagggccgg gcgcggctga aggtcaacct gttcgactac ctcgacaccg
     1621 gcctgttcct cgaccaccgg ccgatgcgcc tgcgcctggc cgacgaggcg caagacgcgc
     1681 gcttcctcaa cctgttcggc tacaccggcg cggcgacggt gcaggcgggg ctcggtggcg
     1741 cgcggcagac gaccaccgtc gacctgtcgg cgacctacct cgagtggtgc gcggacaacc
     1801 tgcgcgagaa cgacctcggc ggcacccgcc accggctggt gcaggccgac gcgctggcct
     1861 ggctggaagc ggacacgcac gactacgacc tggtgttctg cgacccgccg acgttctcca
     1921 attccaagcg ggcgcgggac ttcgacgtgc aggcctcgca cgtgcgcctg ctgcgcgcgg
     1981 cggtggcgcg gctgtcggcc gacggcgtgc tctatttctc caacaactac cggcgcttcc
     2041 gcatggacga ggccgcggtc gccggcttcg cccgctgcga ggagatcacc gcgcagacga
     2101 tcccgccgga tttcgcccgc gacgcgcgca tccaccgctg ctggcgcctg cgccgggcct
     2161 agaccggacg ctcacgcgcg gccgttccac ctgcgcaaca atcgtttccg gccaccgcgc
     2221 tggcgccacc ccctgcggcc gccatcttcc cggaagacat tcttcgagga ggccccatgt
     2281 cgaccacccc cgccggaacc gacgcccgcg tcatccgcag cctgcgcggc atgcctgcgt
     2341 ccgacggcgc cggcgtcaag ctcacccgcg tgatcggcac gccgcagctg gacatgctcg
     2401 atccgttcct gatgctcgac gagttcggca ccgaccgggc cgaggactac ctcgccgggt
     2461 tccccgacca cccgcaccgc ggcttcgaaa ccgtcaccta catgctcgac ggacgcatgc
     2521 gccaccgcga caaccacggc aatgaaggcc tgctggtgcc gggcagcgtg cagtggatga
     2581 ccgccgggcg cgggctcgtg cattcggaaa tgcccgagca gcaggaaggc cgcatgcgcg
     2641 gcttccagtt gtgggtgaac ctgccggcga gcgagaagat ggccgcgccg cgctaccagg
     2701 agttcgcgcc ggagcgcatc ccggtggtga cgccgcaggc cggcgtcgaa gtgaaggtga
     2761 tcgccggcgt cgtcgacggc acccgcgggc cgatcgagca gcccgccacg gacccgctct
     2821 acctcgacat cgcgctcgcc ccgcaggcag cgtggcagta cgcgctgccg gaaggccaca
     2881 acgccttcgc ctacgtcttc gaaggcgcgg cgacggtggg cgagggcgat gtcgcgcgcg
     2941 cgctggagac gcacgcgctc ggcgtgctcg gcggcgggga acgcttcgcg gtgcgcgcgg
     3001 gcagcgaagg ggcgcggctg atcctggtcg cgggacgacc gctgcgcgaa ccggtcgcgc
     3061 gctacggtcc gttcgtcatg aacacgcgcg aacaggtgat gcaggccttc gtggacttcc
     3121 aggaaggccg cttctgaccc ggcatccccg tgcggacgcc ggcggggtct tactggccgg
     3181 cgacctgcgc gtcgccgtgg ccgggcgcga agtgcaggcc ctgcaccagc tgcaggctgg
     3241 cggcgagcgc atcggcgtta ggcgcctgca gccagatgtg cgcggagcgg ccgtccggca
     3301 gcgtcagcac ggtctcccgt gcctccacgc ccggctgcgc ggcgagttcg gcgcgatacc
     3361 agtacagcgc ctgcccgtcg acctggccct gctcggcgcg atccgggcgc gccggatcga
     3421 aactcggctt cggcgagatg tacaggccga acgcctcgga gccgtccgcg cgctgggcga
     3481 ggcagaggtc cgaatcgccg ctggggcggt ggttccaggt gaggttggca tcggccggca
     3541 gctgcgggca cgcgctggcc tcctgcgccc gggcggtgcc ggacagcagc aggccggaca
     3601 ggagcaggcc gcccaggagc aggccggaca ggagcgggcc cgcgacgggg cgggtccgca
     3661 ggagcgtggt ggtgtgcatg cgatcgcccc ccttgcaagc ggtcgtgtgg tacgccccga
     3721 ccatagtcca ctcacgccac gttgacaacc gccgggaaat cggcttgtga cgccgtcgcc
     3781 gggtgccggc gccggcgcgt gttcagggag cggcgtcgac ctgcagcgtg gcgaccggcg
     3841 ccggcccgcg cgcgagc
//
LOCUS       DATIQC010000275         6795 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_159426, whole genome shotgun sequence.
ACCESSION   DATIQC010000275 DATIQC010000000
VERSION     DATIQC010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6795
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_159426"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..385
                     /locus_tag="VLM17_05780"
     CDS             <1..385
                     /locus_tag="VLM17_05780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019336479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HSR65099.1"
                     /translation="ARKKGDRSVGLVSAALGTALDIKPILHANRGETGPVAKVKGFEP
                     AVQKVFDFAGARVRAGLLTPTLCLSYGGELAEMRALPGYQQLRDVCAEHNVDVYESVM
                     SLTGMVNVGKGALVVGFAAEPHKFE"
     gene            504..851
                     /locus_tag="VLM17_05785"
     CDS             504..851
                     /locus_tag="VLM17_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010480863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65100.1"
                     /translation="MPTRYYLSLPDPARARGGEPAFAFHSQGADGLAAELQDALRSDA
                     LFQRWRAAQEDPDAVDKAFGATDPAASVHGEQHDLHIDLIAVTSIPGSVLRHRLRLLA
                     GDGWQLKDVSAVR"
     gene            889..1551
                     /locus_tag="VLM17_05790"
     CDS             889..1551
                     /locus_tag="VLM17_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65101.1"
                     /translation="MVLSWSGGKDAAWTLHALRRRDDVEVVALLTTVTEGYERIAMQG
                     IRVALLHAQARAAGLPVVEARLPQRADNATYETSFAEGLARVQALHPGVGDIAFGDLF
                     LADIRAYRDALCARLGWTPHYPLFGSDTARLARDMLAGGLAARLCCVDTTQLDARFAG
                     RAFDAALLEDLPAGVDPCGERGEFHTLVVGGPMFARPLDVVQGETLLRDGRFAYTDFA
                     PA"
     gene            complement(1555..2004)
                     /locus_tag="VLM17_05795"
     CDS             complement(1555..2004)
                     /locus_tag="VLM17_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65102.1"
                     /translation="MRKWGITSVVVALAVLVPAAAQVRMLQVQPAARPAVQSPSVAVD
                     YQAQYRQEVEKNKALRAQNASLKAQLDAYTSRTGSRVSAYCERATLSRNTAGASNDCS
                     SNGFRCEPVSGLCRTVAHSSDECAAGYVYCSVHGNCVRSAQECQSGD"
     gene            complement(2112..3476)
                     /locus_tag="VLM17_05800"
     CDS             complement(2112..3476)
                     /locus_tag="VLM17_05800"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003477658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HSR65103.1"
                     /translation="MSSPSNVAETPITDRRVLVEYLASGARPREDWRIGTEHEKFGFR
                     LDDLRAPTFDGERGIEALLTGLTRFGWTPVQEHGRTIALTRDGASVTLEPAGQVELSG
                     APLETIHGTCCEVDTHLREVKAVADELGLGFLGMGFQPKWRRDEMPWMPKGRYAIMRS
                     YMPRRGDLGLDMMTRTCTVQVNLDFASEADLVKKFRVSLALQPIATALFADSPFTEGR
                     PNGYQSYRSHIWTDTDPDRTGMLDFVFEDGFGFERYVDYLLDVPMYFSYRDGEYVDLS
                     GQSFKDFLGGRLGALPGALPTLRDWSDHMTTAFPEVRLKKYLEMRGADGGPWNRLCAL
                     PAFWVGLLYDDAALDAAWDLVRDFTMAERHALRDGVPEHALKLPFRGRTVRELALEAL
                     KISAHGLQRRARTNRNGADESIFLTPLIDIAEANETPAERKLALFHGPWNGSVDPVFR
                     EYAH"
     gene            3646..4341
                     /locus_tag="VLM17_05805"
     CDS             3646..4341
                     /locus_tag="VLM17_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017171583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT family protein"
                     /protein_id="HSR65104.1"
                     /translation="MRRWHREDHRSAHAGWLRAAVLGANDGIVSVSGLVVGVAASGAS
                     PGAVLASGMAGVVAGAMSMAAGEYVSVQSQADTEHADLAKERRELAEQPESELAELTH
                     IYARRGLTPELAREVALQLTAHDALASHARDELGITETLRARPLQAALASAAAFAVGS
                     VLPIIAVLLAPAARLEAITIATTLVALSLSGGLAAWVGGAPVVRGAARVVFWGALAMA
                     AAALVGRLFHVSV"
     gene            complement(4352..4966)
                     /gene="yihA"
                     /locus_tag="VLM17_05810"
     CDS             complement(4352..4966)
                     /gene="yihA"
                     /locus_tag="VLM17_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HSR65105.1"
                     /translation="MPAAPNPLARARYLLAAHTARQLPPDGGAEVAFAGRSNAGKSSA
                     LNALCQQNALARVSKTPGRTQQLVFFEVPPHTDKYLVDLPGYGYAKVPQDLQAHWQAF
                     LDGYFGSRMALRGLVVVMDIRHPLKDYDRQMLAYAVQRGLPAHALLTKADKLGRGQQA
                     QALQAVRRELSNAYGDTVGVQAFSGESKQGVDEARAVVAGWLGL"
     gene            5111..5950
                     /locus_tag="VLM17_05815"
     CDS             5111..5950
                     /locus_tag="VLM17_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003468893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR65106.1"
                     /translation="MRHVRAYGFAALASLAVAAAAYAQTTVTPLPDKAPAPAAPIGAT
                     AVADLAKAHWGDAKAGATKAGACAACHGLDGNPSDPQYPRLAGMPERYIATQLALFKS
                     GERNTGMAAVMMPMAAPLSAQDMRDVGAYFASQKAGAGIADDSAIADGPYKGMKFYQA
                     GEKLFRAGDTSRGIPACMACHGPTGAGNPGPAYPHLAGQQSAYLTRRLQEYRAGTTSL
                     SDHHNWDVMAAVAKPLTDQEIQSLASYLQGLHPRSEEASADQVAAARPAAPAAAPAPA
                     PQQ"
     gene            6055..6678
                     /locus_tag="VLM17_05820"
     CDS             6055..6678
                     /locus_tag="VLM17_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HSR65107.1"
                     /translation="MKKTLLVLLALLLPAATALATPASPVEGVDYVAIDDGQPYAPHP
                     AGQVEVAEVFAWWCPHCFEFQPALEAWKATLPKDVRFTYVPAAFNEDAFARAYFAALD
                     ARALPRVQQPLYAAVHVDGTLARNATVDELATWFGEHGLDAAKMRAAMLSPATDRRVQ
                     AAHEFALRSGVIGTPTLIVDGRYRVTGQTRDDNLRIARQLVDQLRAH"
BASE COUNT          909 a         2504 c         2447 g          935 t
ORIGIN      
        1 tgcgcgcaag aagggcgacc gcagcgtcgg cctggtcagc gccgcgctcg gcaccgcgct
       61 cgacatcaag ccgatcctgc acgccaaccg cggcgagacc gggccggtgg ccaaggtcaa
      121 gggcttcgag ccggcggtgc agaaggtgtt cgacttcgcc ggcgcgcgcg tgcgcgcggg
      181 cctgctcacc ccgaccctgt gcctgagcta cggcggcgag ctcgccgaga tgcgcgccct
      241 gcccggctac cagcagctgc gcgacgtgtg cgccgagcac aacgtcgacg tctacgagag
      301 cgtgatgagc ctcaccggca tggtcaacgt cggcaagggc gccctggtgg tcggcttcgc
      361 ggcggagccg cacaagttcg agtgacgcac gcggcggccg tcgtgcgcct ccggggccgg
      421 ggcggcagtc gacccgacgc ggcgatgacg cgccgccgac gcggcggcgc tagagtcgcc
      481 gcatcgccac gcggagcccg tgcatgccga cccgctatta cctgagcctg cccgacccgg
      541 cgcgcgcgcg cggcggcgag cccgcattcg cgttccattc gcagggcgcg gacggcctcg
      601 cggcggaact gcaggatgcg ctgcgcagcg acgccctgtt ccagcgctgg cgcgccgcgc
      661 aggaggatcc ggatgccgtc gacaaggcgt tcggcgccac cgatcccgcc gccagcgtgc
      721 acggcgagca gcacgacctg cacatcgacc tgatcgccgt cacctcgatc ccgggcagcg
      781 tgctgcgcca ccgcctgcgc ctgctggccg gcgacggctg gcagctgaag gacgtcagcg
      841 cggtccgata ggaccggcgc ggccgccacg atgcggagca ggacgccgat ggtgttgtcc
      901 tggagcggcg gcaaggatgc ggcgtggacg ctgcacgcgc tgcgccggcg cgatgacgtc
      961 gaggtggtcg cgctgctcac caccgtgacc gagggctacg agcggatcgc catgcagggc
     1021 atccgggtgg cgctgctgca tgcacaggcg cgcgcggcgg gcctgccggt ggtcgaagcg
     1081 cggctgccgc aacgcgcgga caacgcgacg tacgaaacgt cgttcgccga gggcctggcc
     1141 cgcgtgcagg cgctgcatcc gggcgtgggc gacatcgcct tcggcgacct gttcctcgcc
     1201 gacatccggg cgtatcgcga tgcgctgtgc gcgcgcctgg gctggacgcc gcactatccg
     1261 ctgttcggca gcgacaccgc gcggctggcg cgcgacatgc tggccggcgg cctcgccgcg
     1321 cggttgtgct gcgtggacac cacgcagctc gacgcacgct tcgccgggcg cgcgttcgac
     1381 gcggcgctgc tcgaggacct gccggcgggc gtcgacccct gcggcgagcg cggcgagttc
     1441 cacacgctcg tcgtcggcgg cccgatgttc gcccgcccgc tcgacgtcgt gcagggcgaa
     1501 acgctgctgc gcgacgggcg cttcgcctat accgacttcg cgcccgcctg accctcagtc
     1561 gccggactgg cattcctgcg ccgagcgcac gcagttgccg tgcaccgagc agtagacgta
     1621 gcccgccgcg cattcgtcgc tggaatgcgc cacggtgcgg cacaggccgc tcaccggttc
     1681 gcagcggaag ccgttgctgc tgcagtcgtt gctggcgccg gcggtgttgc ggctgagcgt
     1741 ggcgcgttcg caataggcgc tgacgcggct gccggtgcgg ctggtgtagg cgtccagctg
     1801 cgccttcagc gatgcgttct gcgcgcgcag cgccttgttc ttctcgacct cctggcggta
     1861 ctgcgcctgg tagtcgaccg cgacggacgg cgactgcacg gccgggcgcg cggccggctg
     1921 cacctgcagc atccgcacct gcgcggccgc cggcacgagg acggccagcg ccacgacgac
     1981 ggacgtgatt ccccacttgc gcatggcatt gcctcccggc ccgcgacgcg ggcgccccgg
     2041 gcccagccta gcgcaggcgc ggggaccaat ggccggcgcg cgccgcccgc ggcccgggcc
     2101 gggccggcgg ctcaatgggc gtattcgcgg aacaccgggt cgacgctgcc gttccacggc
     2161 ccgtggaaga gcgcgagctt gcgctcggcc ggcgtctcgt tcgcctcggc gatgtcgatg
     2221 agcggcgtga ggaagatgct ctcgtcggcg ccgttgcggt tggtgcgcgc gcggcgctgc
     2281 aggccgtgcg cggagatctt cagcgcttcc agcgccagct cgcgcacggt gcggccgcgg
     2341 aacggcagct tgagcgcgtg ctccggcacg ccatcgcgca gtgcgtgccg ctccgccatg
     2401 gtgaaatccc tgaccaggtc ccaggcggcg tcgagcgcgg catcgtcgta cagcaggccg
     2461 acccagaacg ccggcagcgc gcacagccgg ttccacggtc cgccatcggc gccgcgcatc
     2521 tccaggtatt tcttcagccg cacttccggg aaggcggtgg tcatgtggtc ggaccagtcg
     2581 cgcagggtcg gcagcgcgcc cggcagcgcc ccgagcctgc cgccgaggaa gtccttgaag
     2641 gactggcccg acaggtcgac gtattcgccg tcgcggtagg aaaagtacat cggcacgtcg
     2701 agcaggtagt cgacgtagcg ctcgaagccg aagccgtcct cgaacacgaa gtcgagcatg
     2761 ccggtgcggt cgggatcggt gtcggtccag atgtgcgagc ggtagctctg gtagccgttc
     2821 ggcctgcctt cggtgaacgg cgagtcggcg aacagcgcgg tggcgatcgg ctgcagcgcg
     2881 agcgacacgc ggaacttctt caccaggtcc gcttcgctgg cgaagtcgag gttgacctgc
     2941 accgtgcagg tgcgcgtcat catgtccagg ccgaggtcgc cgcgcctggg catgtaagac
     3001 ctcatgatcg cgtagcggcc cttgggcatc cacggcatct cgtcgcgccg ccatttcggc
     3061 tggaagccca tgccgaggaa cccgaggccc agctcgtcgg cgaccgcctt gacctcgcgc
     3121 aggtgcgtgt cgacctcgca gcaggtgccg tggatcgtct ccagcggcgc gccggacagt
     3181 tccacctggc cggccggctc gagcgtgacc gaggcgccat cgcgggtgag tgcgatggtg
     3241 cggccgtgtt cctgcaccgg cgtccagccg aaacgggtga gcccggtcag cagcgcctcg
     3301 atgccgcgtt cgccgtcgaa ggtgggcgcg cgcaggtcgt cgaggcggaa cccgaacttc
     3361 tcgtgctcgg tgccgatccg ccagtcctcg cgcggacgcg cgcccgacgc gaggtactcg
     3421 accagcacgc ggcggtccgt gatcggcgtt tcggcgacgt tgctcgggct cgacatcggc
     3481 atccttccgt gggcctcgcc gcaggcgcga cgaggcaggg ggcgactata gcccgcacgc
     3541 atgcaccgca tcggcatcgc cggcggcgcg gctgtgttcc accgccgggc ttgcgcacgg
     3601 ccgctcgcaa ccggtgcaca atccggccat tgcaggaggc acgccatgcg ccgctggcat
     3661 cgcgaggacc accgctccgc ccacgccggc tggttgcgcg cggccgtgct cggcgcaaac
     3721 gacggcatcg tgtcggtctc gggcctcgtg gtcggggtgg cggcgagtgg cgcctcgccc
     3781 ggcgcggtgc tcgccagcgg catggccggc gtggtggcgg gcgcgatgtc gatggccgcc
     3841 ggtgaatacg tgtcggtgca gtcgcaggcc gacaccgagc acgccgacct cgccaaggaa
     3901 cgccgtgaac tcgccgagca gccggaaagc gaactcgccg aactgaccca catctacgcc
     3961 cgccgcgggc tcacgccgga gctggcgcgc gaggtcgcgc tgcagctgac cgcgcacgac
     4021 gcgctcgcca gccatgcgcg cgacgaactc ggcatcaccg agacgctgcg tgcgcggccg
     4081 ctgcaggcgg cgctggcatc ggcggcggcg ttcgcggtcg gctcggtact gccgatcatc
     4141 gcggtgctgc tggcgccggc ggcgcggctc gaggcgatca ccatcgccac cacgctggtc
     4201 gcgctcagcc tgtccggcgg gctcgccgcg tgggtcggcg gcgcgcccgt ggtgcgcggc
     4261 gcggcgcggg tggtgttctg gggcgcgctg gcgatggcgg cggcggcgct ggtcggccgc
     4321 ctgttccacg tatcggtcta gaccggctgc cctacagccc gagccagccg gcgaccaccg
     4381 cgcgcgcctc gtcgacgccc tgcttcgact cgcccgagaa cgcctgcacg ccgacggtgt
     4441 cgccgtaggc gttcgacagt tcgcgccgca ccgcctgcaa cgcctgcgcc tgctggccgc
     4501 ggccgagctt gtcggccttg gtcagcagcg cgtgcgcggg cagcccgcgc tgcaccgcgt
     4561 aggcgagcat ctgccggtcg tagtccttga gcggatggcg gatgtccatc accacgacga
     4621 ggccgcgcaa cgccatccgg ctgccgaagt agccgtcgag gaaggcctgc cagtgcgcct
     4681 gcaggtcctg cggcaccttg gcgtagccgt agcccggcag gtcgacgagg tacttgtcgg
     4741 tgtgcggcgg cacctcgaag aacaccagct gctgggtgcg gccgggcgtc ttcgacacgc
     4801 gcgcgagcgc gttctgctgg cacagcgcgt tgagcgcgct cgacttgccc gcgttggagc
     4861 ggccggcgaa agcgacttcg gcgccgccgt cgggcggcag ctgtcgggcg gtatgcgcgg
     4921 ccagcaggta gcgggcgcgg gcgagcggat tgggggcggc tggcatgccg ataggatcgc
     4981 acgccggtcc gcacgacccg cagcggtttg accatgcccg gccgcgccat cgataatccg
     5041 gcgtctctgc ggccgctgtc ggccgcacgc gccgatgccc ggcgcgcacc gcatcttccc
     5101 ggagctttgc atgcgccacg tccgcgccta cggtttcgcc gccctcgcca gcctcgcggt
     5161 ggccgccgcg gcctacgccc agaccaccgt cacgccgttg ccggacaagg ccccggcgcc
     5221 ggccgcgccg atcggcgcga cggcggtggc ggacctggcg aaggcgcact ggggcgatgc
     5281 caaggccggc gccaccaagg ccggcgcctg cgccgcctgc catggcctcg acggcaaccc
     5341 gagcgacccg cagtacccgc gcctggccgg catgccggag cgctacatcg ccacccagct
     5401 ggcgctgttc aagagcggcg agcgcaacac cggcatggcc gcggtgatga tgccgatggc
     5461 cgccccgctg tcggcgcagg acatgcgcga cgtcggtgcg tacttcgcgt cgcagaaggc
     5521 cggcgccggc atcgccgacg acagcgcgat cgccgacggc ccctacaagg gcatgaagtt
     5581 ctaccaggcc ggcgagaagc tgttccgcgc cggcgacacc agccgcggca tccccgcctg
     5641 catggcctgc cacggcccga ccggcgccgg caacccgggt ccggcctacc cgcacctggc
     5701 cggccagcag tcggcctacc tgacccgccg cctgcaggaa taccgcgccg gcaccaccag
     5761 cctcagcgac caccacaact gggacgtcat ggccgcggtc gccaagccgc tgaccgacca
     5821 ggagatccag tcgctggcca gctacctgca gggcctgcac ccgcgcagcg aggaggcctc
     5881 ggccgaccag gtcgccgcgg ccaggcccgc cgcgccggcc gcagccccgg cgcccgcgcc
     5941 gcagcagtga acttccggcc gcgatgcgcg gtcgcagtgt tcacagccct tgaatcggta
     6001 cgccggccag actccctcgg ccggcgtctt tttgtccgca tgccggaatt cccgatgaag
     6061 aagacgctgc tcgtgctgct cgccctgctg ctgcccgccg ccaccgccct cgccacgccc
     6121 gcctcgccgg tcgagggcgt ggactacgtg gcgatcgacg acggccagcc gtacgcgccg
     6181 catccggcgg gccaggtcga ggtcgcggaa gtgttcgcct ggtggtgccc gcactgcttc
     6241 gagttccagc cggcgctgga ggcgtggaag gcgacgttgc cgaaggacgt gcgcttcacc
     6301 tacgtgccgg ccgcgttcaa cgaggacgcc ttcgcgcgcg catacttcgc cgcgctcgac
     6361 gcccgcgcgc tgccgcgcgt gcagcagccg ctgtacgcgg cggtgcacgt ggacggcacc
     6421 ctcgcccgca acgccaccgt ggacgagctg gcgacctggt tcggcgaaca cggcctcgac
     6481 gcggcgaaga tgcgcgcggc catgctcagc cccgccaccg accgccgcgt gcaggccgcg
     6541 cacgagttcg ccctgcgcag cggggtgatc ggtacgccga cgctgatcgt cgatggccgc
     6601 taccgggtca ccggccagac ccgcgacgac aacctgcgca tcgcccgcca gctcgtcgac
     6661 cagttgcgcg cccactgaat ccatccgagg agacaccgtt cgatgaagcg tttcgccctg
     6721 ctcctgaccg cgttgttgcc gctggccgcc tgccagaagc cggccccggc gcccgccgcc
     6781 gacgcgaccg ccccc
//
LOCUS       DATIQC010000276         7931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_512840, whole genome shotgun sequence.
ACCESSION   DATIQC010000276 DATIQC010000000
VERSION     DATIQC010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7931
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512840"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /locus_tag="VLM17_05825"
     CDS             complement(<1..779)
                     /locus_tag="VLM17_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005419642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HSR65108.1"
                     /translation="MHAQPPRSAFASELRATAMLAAPLVLGHLSTGLIGFVDSAIAGH
                     HRTDTLASVAVGTALFWLPMMVPMGTLMALPPSVSQLDGARRRHHIAPLFRQALWLAL
                     ALGALLFAFLTFAPHALGPMGIAGAIRPGAVAFLHGIRWGVPALTLYFTMRYLSDGLH
                     WTLPTMLLGFGGLLVLVPLGYALTFGVGGLPALGAGGLGIASAAMMWAQAITFAIYLA
                     RAQRFADLALFARFDPPHWPPIRGLLGTGLPIGVTVAMEGSL"
     gene            918..2054
                     /locus_tag="VLM17_05830"
     CDS             918..2054
                     /locus_tag="VLM17_05830"
                     /inference="COORDINATES: protein motif:HMM:NF023828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3667 domain-containing protein"
                     /protein_id="HSR65109.1"
                     /translation="MSDATTPDATPRPACQNCGTPLLGPHCYACGQPVHGLVRQFSSV
                     VGDFLDSVLNIDSRIVHTLWPLFAKPGHLSLEYFAGRRVRYVSPVRLFVFLSIVTFFV
                     ARLVVPAGNGTFQINEDSGDRIARATTVAEVERVRDDALAKLAKARAEIPEVTGAKTG
                     IDAGAAAIRRRAQQRIDALREAAAHGEPVPMPDDSSSIEFDGKPWDAKTHPVRIGWWP
                     QFANDWLNGEIGRASSNVARMRKDPSLFKDAALGAIPSTLFVLVPVFALLLKVLYLFK
                     RRLYMEHLIVALHSHAFLCLALLGVFLLTALGEAVPLLGRPAGLVEVALFAWMPVYLL
                     LMQKRVYQQGWTMTLLKYGLLGFCYLILLSVGAVLTVLASLVWA"
     gene            2054..2359
                     /locus_tag="VLM17_05835"
     CDS             2054..2359
                     /locus_tag="VLM17_05835"
                     /inference="COORDINATES: protein motif:HMM:NF025479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4286 family protein"
                     /protein_id="HSR65110.1"
                     /translation="MLLYEVELAVEAGIAEAFRAWLPGHVAELLALPGFVSAEILAVE
                     EPAPPPGEVALCVRYRLRDRATLDAYLRDHAARLRGDGLARFGGRFRASRRVLAPLG"
     gene            2783..4951
                     /locus_tag="VLM17_05840"
     CDS             2783..4951
                     /locus_tag="VLM17_05840"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017167545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HSR65111.1"
                     /translation="MTDAVLRVALPLPLARLFDYLPPAGMAATPGLVGQRVRVPFGQR
                     ELVGVVAEVGPAEAGAGDLRPVLSLPDADPLLHGELLESLRWLARYIHAPLGEVLATA
                     LPAALRRGEPLPDTHVRGWRLTDAGMTAGLRAGRPQRLAMLLREGALGEDELDAVCEG
                     WRAPLRTLVGRGLAEAVALASTAARPAQAAPTLNAEQQAACDALHATEGFAPLLLDGV
                     TGSGKTEVYLQAIADCLARGRQALVLVPEIGLTPQTLARFRGRLGVPVHALHSGLNDN
                     ERARVWAAAWRGEARVIVGTRSAVFTPLPDAGLIVVDEEHDGSYKQQDGIRYHARDFA
                     LVRGKALGVPVLLGSATPSLESLHNARAGRYAQLRLAHRAGAARPPSVRVLDVRKRPL
                     QAGLSPELLAAVRAALVAGGQVLVFKNRRGYAPVLLCHDCGWSAQCRRCDAPMTVHAG
                     GRRLQCHHCGARGPVPPACPDCGGLALQPQGVGTERLEELLAREFADVPVLRIDKGST
                     RKRDALEAMLAGLGARPGILVGTQMLAKGHDLPNLTLVAVVGIDEGLFSADFRAGEKL
                     AQLLIQVAGRAGRADKPGVVWLQTHHPQHPLLQTLIAGGYHAFADGELALREAARFPP
                     FAHLALLRAEAPHADPPMQFLRAAQALLAEPGHPIELHGPLPAPMPRRAGFVRAQLLL
                     SAARRRDLHAALEMALPAIRALPEARRLRWSLDVDPLDLA"
     gene            complement(4961..6016)
                     /locus_tag="VLM17_05845"
     CDS             complement(4961..6016)
                     /locus_tag="VLM17_05845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65112.1"
                     /translation="MTQRVHRLDVDDVAAPRRAFLRASAGALALAVFGARPRAALAAV
                     APVDIAAALDACRVRRGPCKGAYALLPRAGVVWYFASLALRLAWDVDPALRGNTRAYL
                     DLHLDRLRADYTIADVDDPSRDAGWREPDSHDAYAGTLLSLACEYAQRFGDMAWFARR
                     AALLKDVAYANLAVPQKPGGLVGAFQRPGTPGYLMNNCEDWHGLQRLAQLLRQRGDGD
                     AGYFALVADGVRAGIDGLFDPLARRWRAADVPLGGGFYPALACQVYPQAFGLPVDAAR
                     CDAGYAVLNAEAPGWENCDRDPYPWLALGAVAALRGDRIRASAQAACCDALASGDPAR
                     LTVNELGWLRLLRRTLG"
     gene            complement(6151..7044)
                     /gene="rpoH"
                     /locus_tag="VLM17_05850"
     CDS             complement(6151..7044)
                     /gene="rpoH"
                     /locus_tag="VLM17_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002803651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HSR65113.1"
                     /translation="MSETSMTQALVANNLPILAGGLPSALGSLEAYIGAVHQIPVLPV
                     EEEQALARRFREEDDLDAARQLVLSHLRFVVHVARGYNGYGLQLGDLIQEGNIGLMKA
                     VKRFDPDIGVRLVSFAVHWIRAEMHEFILRNWRIVKVATTKAQRKLFFNLRRSKTRLG
                     WLNAEEVRAVAQDLNVSERDVLEMESRLAGRDVGFDAPADEDDEHAPPAPAHYLVAHD
                     EDPSQAYERADSEADQLELLREGLQRLDARSRDIIRRRWLDDGSKVTLQELADEYGVS
                     AERIRQVEANALKKMKALFAA"
     gene            complement(7358..>7931)
                     /locus_tag="VLM17_05855"
     CDS             complement(7358..>7931)
                     /locus_tag="VLM17_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65114.1"
                     /translation="MAVLAGGWYSEARHRQSDAQAFEARLARLERRGAASDVVPAPSR
                     AGVQVVSAESLAGIAPGGPAARLGPQTAEDAQRQATEAFARLDARFATDGNDAAWAMS
                     TEGAVNRAIAEPALAPFKAPQASDIRCARTMCRLEFTFASLDQAEDWLTYYPLGVASQ
                     LPIFRSQSLLLPDGRVQLNMFGFRDANARL"
BASE COUNT         1070 a         2904 c         2886 g         1071 t
ORIGIN      
        1 aggctgccct ccatcgccac ggtcacgccg atcggcaggc cggtgccgag caggccccgg
       61 atcggcggcc agtgcggcgg gtcgaagcgc gcgaacaggg cgaggtcggc gaagcgttgc
      121 gcgcgcgcga ggtagatcgc gaacgtgatc gcctgcgccc acatcatcgc ggccgaggcg
      181 atcccgagcc cgcccgcgcc gagcgccggc aggccaccga cgccgaaggt cagcgcatag
      241 ccgagcggga ccagcaccag cagcccgccg aagccgagca gcatggtcgg cagcgtccag
      301 tgcaggccgt cgctgagata gcgcatcgtg aagtacagcg tcagcgccgg cacgccccag
      361 cggatcccgt gcaggaaggc gacggcgccg ggccggatcg ccccggcgat gcccatcgga
      421 cccagcgcat gcggcgcgaa cgtgaggaag gcgaacagca gcgcgccgag cgccagcgcc
      481 agccacaacg cctgccggaa cagcggcgcg atgtggtggc gccgccgcgc gccgtcgagc
      541 tgcgacaccg acggcggcaa ggccatcagc gtgcccatcg gcaccatcat cggcagccag
      601 aacagcgcgg tgccgaccgc gaccgaggcg agcgtgtcgg tgcggtggtg gccggcgatc
      661 gcgctgtcga cgaagccgat cagcccggtc gacagatggc cgagcacgag cggcgcggcg
      721 agcatggcgg tggcgcgcag ttcgctggcg aaggcggaac gtggcggttg ggcgtgcatt
      781 ccgggcgaag gaaaggtcgt cgatgcgcgg cgccggcggc agccggacgg cgcgccaggc
      841 gcggagcggt tgaaacgcgt gccgctcggc aggcggcagg cggtcggcta tcttagccgc
      901 gacctcccgg gggaccgatg agcgacgcca ccacgcccga cgccacgcca cgccccgcct
      961 gccagaactg cggcacgccc ctgctcggcc cgcactgcta cgcctgcggc cagccggtgc
     1021 acgggctggt gcgccagttc agcagcgtcg tcggcgactt cctcgacagc gtgctcaaca
     1081 tcgattcgcg catcgtccac acgctgtggc ccctgttcgc gaaaccgggg cacctcagcc
     1141 tggagtattt cgccggccgg cgcgtgcgct acgtcagccc ggtgcggctg ttcgtgttcc
     1201 tcagcatcgt caccttcttc gtcgccaggc tcgtcgtccc cgccggcaac ggcaccttcc
     1261 agatcaacga ggacagcggc gaccgcatcg cccgcgccac caccgtcgcc gaggtcgagc
     1321 gggtccgcga cgacgcgctg gcgaagctgg cgaaggcgcg cgccgagatc ccggaggtga
     1381 ccggggcgaa gaccggcatc gacgcgggcg ccgcggcgat ccgccgcagg gcgcagcagc
     1441 gcatcgacgc gctgcgcgag gcggccgcgc acggcgagcc ggtgccgatg ccggacgaca
     1501 gctcgtcgat cgagttcgac ggcaagccct gggacgcgaa gacgcatccg gtgcggatcg
     1561 gctggtggcc gcagttcgcc aacgactggc tcaacggcga gatcggccgc gcgtcgtcga
     1621 acgtcgcgcg gatgcgcaag gacccgtcgc tgttcaagga tgccgcgctc ggcgccatcc
     1681 cctcgacgct gttcgtgctg gtgccggtgt tcgccctgct gctgaaggtg ctgtacctgt
     1741 tcaagcgccg gctgtacatg gaacacctga tcgtggcgct gcacagccac gcgttcctgt
     1801 gcctggccct gctcggcgtg ttcctgctga ccgcgctcgg cgaggcggtg ccgctgctgg
     1861 ggcgccccgc cgggctggtc gaggtggcgc tgttcgcgtg gatgccggtc tacctgctgc
     1921 tgatgcagaa gcgcgtctac cagcagggct ggacgatgac gctgctcaag tacggcctgc
     1981 tcggcttctg ctacctgatc ctgctcagcg tcggcgcggt gctgacggtg ctggccagcc
     2041 tggtctgggc ctgatgctgc tgtacgaggt cgagctggcg gtcgaggccg gcatcgcgga
     2101 agccttccgg gcctggctgc cgggccacgt cgccgaactg ctggcgctgc cgggcttcgt
     2161 gtcggcggaa atcctcgcgg tcgaggagcc cgccccgccg cccggcgaag tcgcgctgtg
     2221 cgtgcgctac cgcctgcggg accgggccac cctcgacgcc tacctgcgcg accacgccgc
     2281 gcggctgcgc ggcgatggcc tggcccgctt cggcggccgg ttccgtgcgt cccgccgggt
     2341 gctggcgccc ctcggatgag cacgcggcca gcgtgaccgg ccgcacattc ggacggaacg
     2401 ccacgaaaac agcgcttgac agcggccgtc gttccggccc cgccgcgaaa cggttgtgca
     2461 cagcagcgcg agcggccgcc tccacaccac gctcaccggc ctgtacgcgt gtcgttcaac
     2521 tgggtttcac gcacaagtcc ttgatccgga agggaacagt ggttttggtc attttttcgc
     2581 catacgcgca aagccccttg tttggccgcg tttgcgcatt tcggccgagc ggacatgcac
     2641 aaccttatcc acaggaagtg tggataaggg cgaaagccgt tgcccagcgc gcacttacac
     2701 cggattccgc gagccgcgac cgagctaggc gccgcaagtc gcggctccgg tccggcgcgg
     2761 cgcgcccgct agacttgcgc ccatgaccga cgccgtcctg cgggtcgccc tgcccctgcc
     2821 gctggcgcgg ctgttcgact acctcccgcc cgccggcatg gcggccaccc cgggcctcgt
     2881 cggccaacgc gtgcgcgtgc ccttcgggca gcgcgagctg gtcggggtgg tggccgaggt
     2941 cggtccggcc gaggccggcg ccggcgacct gcggcccgtc ctgtcgctgc ccgacgccga
     3001 cccgctgctg cacggcgaac tgctcgaatc gctgcggtgg ctggcccgct acatccacgc
     3061 cccgctcggc gaggtgctgg cgaccgcgct gccggcggca ctgcgccgcg gcgagccgct
     3121 gcccgatacc cacgtgcgcg gctggcgcct gaccgacgcc ggcatgaccg ccggcctgcg
     3181 ggccggccgc ccgcagcggc tggccatgct gctgcgcgag ggcgcactgg gcgaagacga
     3241 actggatgcg gtgtgcgaag gctggcgcgc gccgctgcgc acgctggtcg ggcgcgggct
     3301 ggcggaagcg gttgcgctcg catcgacggc ggcgcgtccc gcccaggccg cgcccaccct
     3361 caacgccgag cagcaggccg cgtgcgacgc gctgcacgcc accgaaggct tcgctccgct
     3421 gctgctcgac ggcgtcaccg gcagcggcaa gaccgaggtc tacctgcagg cgatcgccga
     3481 ctgcctcgcg cgcggccggc aggcgctggt gctggtgccg gagatcggtc tgaccccgca
     3541 gaccctggcg cgcttccggg gccgcctcgg cgtgccggtg catgcgctgc actcgggcct
     3601 caacgacaac gagcgcgccc gcgtctgggc cgcggcctgg cgcggcgagg cgcgcgtcat
     3661 cgtcggcacg cgctcggcgg tgttcacgcc cttgccggac gccggcctga tcgtggtcga
     3721 cgaggaacac gacggcagct acaagcagca ggacggcatc cgctaccacg cgcgcgactt
     3781 cgccctggtg cgcggcaagg cgctcggcgt gccggtgctg ctgggcagcg cgaccccgtc
     3841 gctggagtcg ctgcacaacg cgcgcgccgg ccgctatgcg cagctgcgcc tggcccaccg
     3901 cgccggcgcc gcgcggccgc cctccgtgcg cgtgctcgac gtccgcaagc gcccgctgca
     3961 ggccggactg tcgcccgaac tgctggcggc ggtgcgcgcc gcgctcgtcg ccggcggcca
     4021 ggtcctggtg ttcaagaacc gccgcggcta cgcgccggtg ctgctgtgcc acgactgcgg
     4081 ctggagcgcc cagtgccgcc gctgcgatgc acccatgacc gtgcacgcgg gcggccgtcg
     4141 cctgcagtgc catcactgcg gcgcacgcgg gccggtgccg cccgcctgcc ccgattgcgg
     4201 cgggctcgcc ctgcagccgc agggcgtggg caccgagcga ctggaggaac tgctcgcgcg
     4261 ggaattcgcc gacgtgcccg tgctgcgcat cgacaagggc agcacgcgca agcgcgacgc
     4321 gctcgaagcg atgctggccg ggctcggcgc gcggccgggc atcctggtcg gcacgcagat
     4381 gctggccaag ggccacgacc tgccgaacct caccctggtg gcggtggtcg gcatcgatga
     4441 aggactgttc tcggcggact tccgcgccgg cgaaaagctc gcgcagctgc tgatccaggt
     4501 ggccgggcgc gcgggtcgcg ccgacaagcc gggcgtggtc tggctgcaga cccaccatcc
     4561 gcagcatccc ctgctgcaga cgctgatcgc cggcggctac cacgccttcg ccgatggcga
     4621 gctggccctg cgcgaggccg cgaggttccc gccattcgcg cacctcgcgc tgctgcgcgc
     4681 ggaagcgccg cacgccgatc cgccgatgca gttcctgcgc gcggcgcagg cgctgctcgc
     4741 ggagccgggc cacccgatcg aactgcatgg tccgctgcca gcgccgatgc cgcgccgcgc
     4801 cggcttcgtg cgtgcgcaac tgctgctgtc ggcggctcgg cgccgtgacc tgcatgcggc
     4861 gctggagatg gcgctgccgg cgatccgcgc gctgcccgaa gcgcgccgcc tgcgctggtc
     4921 gctggacgtg gacccgctcg acctcgcctg accggccggc ctagccgagc gtgcgccgca
     4981 gcaggcgcaa ccagccgagt tcgttgacgg tgaggcgcgc cggatcgccg gaggccagcg
     5041 cgtcgcagca cgccgcctgc gccgacgcgc gaatgcgatc gccgcgcagc gccgcgaccg
     5101 cgccgagcgc gagccacggg taggggtcgc ggtcgcagtt ttcccagccg ggggcttccg
     5161 cgttgagcac ggcatagcct gcatcgcagc gcgcggcgtc caccggcagg ccgaatgcct
     5221 gcggatacac ctggcacgcc agcgccgggt agaagcctcc gcccagcggc acgtcggccg
     5281 cgcgccagcg gcgcgccagc ggatcgaaca ggccgtcgat gccggcccgc acgccgtcgg
     5341 cgaccagcgc gaaatagccc gcgtcaccgt cgccgcgctg gcgcagcagc tgcgccagcc
     5401 gctgcagccc gtgccagtcc tcgcagttgt tcatcaggta ccccggcgtg cccggccgct
     5461 ggaacgcgcc gacgaggccg ccgggtttct gcggcaccgc gaggttggcg tacgccacgt
     5521 ccttgagcag cgcggcccgc cgcgcgaacc aggccatgtc gccgaagcgc tgcgcgtact
     5581 cgcaggcgag cgagagcagc gtgccggcgt aggcgtcgtg gctgtcgggt tcgcgccagc
     5641 cggcgtcgcg cgacggatcg tcgacgtcgg cgatggtgta gtccgcccgc aaccggtcga
     5701 gatggaggtc gaggtaggcc cgggtgttcc cgcgcaacgc cggatccacg tcccacgcca
     5761 gccgcaacgc gaggctggcg aaataccaga ccacgccggc gcgcggcagc agcgcatacg
     5821 cacccttgca cggtccgcgc ctgacccggc acgcgtcgag cgcggcggcg atgtcgaccg
     5881 gcgcgaccgc cgccagcgcg gcccgggggc gcgcaccgaa cacggccagc gccagcgcac
     5941 cggcgctggc gcgcaggaag gcgcgccgcg gcgcggcgac gtcatccaca tccagccggt
     6001 gcacccgctg cgtcatccgc ccatcctgcc cgacggccgc gaccttgcgg catgcaagcg
     6061 caggcggcgt ggccggcccg tgatccacgg ctggaacgcg gaacggcccg gtcgcccggg
     6121 ccgttcgttg gtcgctgcgt ggcgttccgc tcaggccgcg aacagcgcct tcatcttctt
     6181 cagcgcgttc gcctcgacct ggcggatgcg ttcggcggac acgccgtatt cgtcggccag
     6241 ttcctgcagc gtcaccttgc tgccgtcgtc cagccagcgg cggcggatga tgtcgcgcga
     6301 acgggcgtcc aggcgctgca ggccttcgcg cagcagctcg agctggtcgg cctcgctgtc
     6361 ggcgcgctca taggcctgcg acggatcctc gtcgtgggcg acgaggtagt gcgcgggcgc
     6421 gggcggcgcg tgctcgtcgt cctcgtcggc gggcgcgtcg aagccgacgt cgcgaccggc
     6481 caggcgcgat tccatctcca gcacgtcgcg ctcggacacg ttgaggtcct gcgcgaccgc
     6541 gcgcacttcc tcggcgttga gccagcccag gcgcgtcttc gacctgcgca ggttgaagaa
     6601 cagcttgcgc tgcgccttgg tggtggcgac cttgacgatg cgccagttgc gcaggatgaa
     6661 ctcgtgcatc tccgcgcgga tccagtgcac ggcgaagctc accaggcgca cgccgatgtc
     6721 gggatcgaag cgcttgaccg ccttcatcag gccgatgttg ccttcctgga tcaggtcgcc
     6781 cagttgcagg ccgtagccgt tgtagccgcg cgcgacgtgc acgacgaagc gcaggtgcga
     6841 gagcaccagc tgcctggcgg catcgaggtc gtcttcctcg cggaagcggc gcgcgagcgc
     6901 ctgctcctcc tccaccggca gcaccgggat ctggtgcacc gcgccgatgt aggcctccag
     6961 cgagccgagc gcgctcggca ggccgccggc caggatgggg aggttgttgg cgacgagcgc
     7021 ttgggtcatg gaggtttcgc tcatggtcgg gagtttagca gtgggcatct gtgactgcta
     7081 agcgggccgg aagttcgtag cgttgcattc atggaacgac cgggcgcccc aaccggcctc
     7141 cgatccagta cgccacggcg cacgtcaagt cgaggtgggg acgcgacgga gccttgcaag
     7201 ggcggtgggc gggcacccgc aacgcagcgg gtgggccgat gcgcgagccc gcacccgcgc
     7261 cacgtcatcc tcgcgctggc gggctgcggg acgggcgccc gggaaacctc accggacggc
     7321 cggacccgcg cgacggccgt cggccgggtg gcctggccta cagtcgcgcg ttggcgtccc
     7381 ggaacccgaa catgttcagc tgcacgcgcc catccggcag cagcagcgac tggctgcgga
     7441 agatcggcag ctggctggcg acgcccagcg ggtaataggt cagccagtcc tcggcctggt
     7501 cgagcgacgc gaaggtgaat tccagccggc acatggtccg ggcgcagcgg atgtcgctcg
     7561 cctgcggcgc cttgaacggc gccagcgccg gttcggcgat ggcacggttg accgcgccct
     7621 ccgtgctcat tgcccaagcg gcatcgttgc cgtcggtggc gaaacgggcg tcgagccggg
     7681 cgaaagcctc ggtcgcctgc cgctgcgcgt cttcggccgt ctgcggcccg agtcgcgcgg
     7741 ccgggccgcc cggagcgatg cctgccagcg actcggccga caccacctgg acgcccgccc
     7801 ggctcggggc aggcacgacg tcgctcgcgg ctccgcgccg ttcgaggcgc gcgaggcggg
     7861 cttcgaaggc ctgcgcgtcc gactgccggt ggcgcgcctc ggaataccaa ccacccgcca
     7921 ggaccgccat g
//
LOCUS       DATIQC010000277         1603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_407093, whole genome shotgun sequence.
ACCESSION   DATIQC010000277 DATIQC010000000
VERSION     DATIQC010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407093"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /locus_tag="VLM17_05860"
     CDS             <1..757
                     /locus_tag="VLM17_05860"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014403673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HSR65115.1"
                     /translation="KFDVERGSFLGNCMRGNIWRSDYYIDKLHKPVDRTEWDMTPQTY
                     NAYYNPSNNEIVLPAAMFMVPGVADAQVDDAVAYGYVAAGTIGHEITHGFDDEGRQYD
                     AQGNLSGWWTAQDAARFNAAAQKMVDEFNAYEPLPGLHINGKASLGENIADYGGLLLG
                     LEAFEKTAQYREGRSIGGLTPTQRYFLGYALGWMSQQRTERLRQRLLSDVHAPAKWRV
                     LGPLSNIPEFYQAFGVKPGQPMWRAPQERVHIW"
     gene            871..>1603
                     /locus_tag="VLM17_05865"
     CDS             871..>1603
                     /locus_tag="VLM17_05865"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HSR65116.1"
                     /translation="MEDSRSLVFLSGGGECGALIRAGDWSASPLGPPEAWPQSLRSVV
                     GLMLPSKFPMFVAWGPELRFLYNDPYGEILGRKHPAAMGGRFEDIWREIWPDIQPIVA
                     KALRGESSYHENLPLLMNRRGFDEQTWFTFSYSPVREESGAIAGMYCAVKETTSEVLN
                     ERARLEENERLMMLFAQAPSVMAVVREPGHVFELANAAYQEVVAGGRPLIGRSYREAL
                     PELEGQGYFELLDQVAATGETFRAQA"
BASE COUNT          263 a          534 c          568 g          238 t
ORIGIN      
        1 gaagttcgac gtcgagcgcg gctcgttcct cggcaactgc atgcgcggga acatctggcg
       61 cagcgactac tacatcgaca agctgcacaa gccggtcgat cgcaccgagt gggacatgac
      121 gccgcagacc tacaacgcct actacaaccc gtcgaacaac gagatcgtgc tgccggcggc
      181 gatgttcatg gtgccgggcg tggcggatgc gcaggtcgac gacgcggtcg cctacggcta
      241 cgtcgccgcg ggcacgatcg gccacgagat cacccacggc ttcgacgacg aaggccgcca
      301 gtacgatgcg cagggcaacc tgtcgggctg gtggaccgcg caggacgccg cgcgcttcaa
      361 cgccgccgcg cagaagatgg tcgacgagtt caacgcctat gaaccgctgc ccggactgca
      421 catcaacggc aaggccagcc tcggcgagaa catcgccgat tacggcggcc tgctgctcgg
      481 gctggaagcg ttcgagaaga ccgcgcagta cagggaaggc aggtcgatcg gcgggctcac
      541 gccgacccag cgctacttcc tcggctacgc gctgggctgg atgagccagc agcgcaccga
      601 gcgcctgcgc cagcgcctgc tctccgacgt gcatgcgccg gccaagtggc gcgtgctcgg
      661 gccgctgtcg aacatcccgg agttctacca ggccttcggc gtgaagcccg gccagccgat
      721 gtggcgcgcg ccgcaggaac gcgtgcacat ctggtaacgc gtccgcggac gggcgcgtcc
      781 cgtccgactg tcacgccgcg tgcacgccgg aatcgggagg gtttccggtt cgaatcacgc
      841 accggccccg gggccgtggg aaaagcatcc atggaggatt cccggtcgct cgtgttcctt
      901 tcgggcggcg gcgagtgcgg tgccctgatc cgggccgggg actggtcggc ctcgccgctg
      961 gggccaccgg aggcctggcc gcagtcgctg cgctcggtgg tcgggctgat gctgccctcg
     1021 aagttcccca tgttcgtggc atggggcccc gaactgcgtt tcctctacaa cgacccgtac
     1081 ggcgagatcc tcggccgcaa gcatccggcg gcgatgggcg gccgcttcga ggacatctgg
     1141 cgcgagatct ggccggacat ccagccgatc gtggccaagg cgctccgcgg cgagtccagc
     1201 taccacgaga acctgccgct gctgatgaac cgccgcggct tcgacgagca gacctggttc
     1261 accttctcct actcgccggt gcgcgaggaa tccggcgcga tcgcgggcat gtactgcgcg
     1321 gtcaaggaga cgacgtcgga agtgctcaac gagcgcgcgc ggctggagga gaacgagcgg
     1381 ctgatgatgc tgttcgcgca ggcgcccagc gtgatggcgg tggtgcgcga gccgggccac
     1441 gtgttcgagc tggcgaacgc cgcctaccag gaggtggtgg ccggcgggcg tccgctgatc
     1501 ggccggtcgt atcgcgaggc gctgcccgag ctggaggggc agggctactt cgaactgctc
     1561 gaccaggtgg cggccaccgg cgaaaccttc cgcgcgcagg cgt
//
LOCUS       DATIQC010000278         6151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_407098, whole genome shotgun sequence.
ACCESSION   DATIQC010000278 DATIQC010000000
VERSION     DATIQC010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6151
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407098"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1261)
                     /locus_tag="VLM17_05870"
     CDS             complement(<1..1261)
                     /locus_tag="VLM17_05870"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR65117.1"
                     /translation="MKVLACDGIHEDGLALLRAAGWEVVVADQPIKDPDVLALALADV
                     DAVLVRSATRVPAEALARAERLKVIGRAGAGVDTIDVDAATARGIAVMNAPDGNTLAA
                     AEHALSLLFALARHVPRADAGMKAGQWPKAGLTGFELEGKKLGVIGLGRIGGTVARKA
                     QGIGMDVAAHDPFLPPAAAGKGSVPLKTLDELLAWADIVTLHIPRTKETTNLLSEARM
                     RSMKPGAFVINAARGGLVDEAALLRLLDEGHLAGAALDTFVTEPLPEASPLRAHPKLI
                     LTPHLGASTSEAQQAVSTILARQIIDFVATGAVAGCVNLPPLTAEAAREVGPWMPLMS
                     SLGRLAARLVPAPTRLTITYAGRTEALDTRPLTRLLVAALLGTHSGRVTPVNALHEAA
                     ARGLVVAETVGGDSDGFDRLLRVRVEGD"
     gene            1550..2587
                     /gene="tdh"
                     /locus_tag="VLM17_05875"
     CDS             1550..2587
                     /gene="tdh"
                     /locus_tag="VLM17_05875"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017164734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008743 - L-threonine 3-dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HSR65118.1"
                     /translation="MSQALMKALVKREPAKGIWMEEVPIPAPGPNEVLIRLEKTAICG
                     TDLHIYLWDDWSQRTIRPGLTIGHEFVGRIVDLGPGVTGYKVGQRVSAEGHIVCGHCR
                     NCRAGRQHLCPNTVGIGVNRNGAFAEFIVMPASNLWPIPDQIPSELAAFFDPFGNAAH
                     CALEFDVVGEDVLITGAGPIGIIAAGICKFIGARNVVVTDVNDYRLKLAADMGATRVV
                     NVANTSLKDVMADLHMEGFDVGLEMSGNPRAFNDMLDCMYHGGKIAMLGIMPKGAGAD
                     WDKIIFKGLTIHGIYGRKMYETWYKMTQLVLSGFPLGKVLTHQLPIDEFQQGFELMES
                     GKAGKVVLSWN"
     gene            2652..3845
                     /gene="kbl"
                     /locus_tag="VLM17_05880"
     CDS             2652..3845
                     /gene="kbl"
                     /locus_tag="VLM17_05880"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008890 - glycine C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HSR65119.1"
                     /translation="MSLTERYEAALDEIRDAGLFKAERIITSPQAAEITLADGRKVLN
                     FCANNYLGLADHPAMIQAAKEALDTHGFGMASVRFICGTQDLHKQLEQTIADFFGTED
                     TILYAACFDANGGLFEPLLDENDAIISDALNHASIIDGVRLCKAKRYRYANCDMADLE
                     KQLQQARADGARTIMVTSDGVFSMDGFIAPLDEITALAKKYGALVHIDECHATGFLGD
                     TGRGSAEVKGVLEKIDIFTGTLGKAMGGALGGFTTAKKEVIELLRQRSRPYLFSNSLP
                     PHVVAAGIKAFEMLSSAGELRTRLRENTAYFRERMTAAGFDIKPGVHPICPVMLYDAP
                     LAQKFAQRLLEEGIYAIGFFFPVVPKGQARIRTQISAAHARGHLDRAIDAFTRIGREL
                     GVLKA"
     gene            complement(3895..4266)
                     /locus_tag="VLM17_05885"
     CDS             complement(3895..4266)
                     /locus_tag="VLM17_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65120.1"
                     /translation="MRSFAKALPCLLFCVACVTLAPAVASASVAPPPGPHAAGHGPAH
                     GPAIGRHAHFDMGAAVARRRTKAHRPAPKLVQAAPHDTSNRFLMTQNGRQMTADDFDA
                     WMKARGFRVAKGAPEAARAAD"
     gene            complement(4419..5192)
                     /locus_tag="VLM17_05890"
     CDS             complement(4419..5192)
                     /locus_tag="VLM17_05890"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSR65121.1"
                     /translation="MGAAAGPEAHAARHGLARVISKRGICSRSEAARLVGEGRVQVDG
                     RVARDPEAPTLPDAMIRIDGRPATTARRCYLMLHKPRGVVTSTRDEQGRDTVYRCLDG
                     APLPWLAPLGRLDKASEGLLLLSNDPAWAAAITDPSRGPLKTYHVQVDRVPDADLLRA
                     LAEGVEADGGRLRAASVRLLRAGQKNAWLEIVLDEGRNRHIRRLLAAFDVAVLRLVRV
                     AIGDLGLGSLGKGQWRELGAEEVARLTAGPPAGQGDGAS"
     gene            complement(5228..5725)
                     /locus_tag="VLM17_05895"
     CDS             complement(5228..5725)
                     /locus_tag="VLM17_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65122.1"
                     /translation="MRNPLLLLGLLAMPIAAHASSCPAPGPVAPLQPVGVAPLSDELG
                     FASRPLGEPAGVLSQAYDASLAVDRVLLRQQWAHCLALANAAPATGVVGPDNPAAYKP
                     RTQYDNTPWRFNMSQNGKKMTADEFAAWMEARGVHVARGATPAAVQAGDPALPAPPPA
                     DPPRP"
     gene            complement(5879..>6151)
                     /locus_tag="VLM17_05900"
     CDS             complement(5879..>6151)
                     /locus_tag="VLM17_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017171142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR65123.1"
                     /translation="ILKRYPDLKVEVAGHTDSVGTDAYNQKLSERRAKAVYDYLTSNG
                     VDASRLVGPNGYGESRPIAPNTNPDGSDNPEGRAQNRRTELNVQNK"
BASE COUNT          935 a         2157 c         2168 g          891 t
ORIGIN      
        1 cgtcgccctc cacgcgtacc cggagcaggc ggtcgaagcc atcgctgtcg ccgccgacgg
       61 tttcggcgac caccagtccg cgcgcggccg cttcgtgcag tgcgttgacc ggcgtgacgc
      121 gtccggaatg cgtgccgagc agcgcggcga ccagcagccg ggtcagcggc cgggtgtcga
      181 gcgcctcggt gcggccggcg taggtgatgg tgagcctggt cggcgctggc accaggcgcg
      241 cggcgaggcg gccgagggag gacatcagcg gcatccacgg cccgacttcg cgcgcggcct
      301 cggcggtgag cggcggcagg ttgacgcagc cggcgaccgc gccggtggcg acgaaatcga
      361 tgatctgccg cgccaggatc gtgctcaccg cctgctgtgc ctcgctggtg gacgcgccca
      421 ggtgcggggt gaggatcagc ttcgggtgcg cgcgcagcgg cgaagcctcc ggcagcggtt
      481 cggtgacgaa ggtgtcgagc gcggcgccgg cgaggtggcc ttcgtcgagc aggcgcagca
      541 gcgcggcctc gtcgaccagg ccgccgcgcg ccgcgttgat cacgaaggcg cccggcttca
      601 tcgaacgcat gcgcgcctcc gagaggaggt tcgtcgtctc cttcgtgcgc gggatgtgca
      661 gggtgacgat gtcggcccag gcgagcagct cgtccagcgt cttcagcggc acgctgccct
      721 tgccggcggc ggccggcggc aggaacggat cgtgcgcggc gacgtccatg ccgatgccct
      781 gcgccttgcg cgcgacggtg ccgccgatgc ggccgagccc gatcacgccg agcttcttgc
      841 cttccagttc gaacccggtc agccccgcct tcggccactg gcccgccttc atgccggcgt
      901 cggcgcgcgg gacgtgccgg gcgagcgcga acaacagcga aagcgcgtgt tccgccgcgg
      961 ccagcgtgtt gccgtccggg gcgttcatca ccgcgatgcc acgcgcggtg gccgcgtcga
     1021 cgtcgatggt gtccacgccg gcaccggcgc ggccgatcac cttgaggcgc tcggcacggg
     1081 ccagcgcctc ggcgggcacg cgggtcgcgg atcgcaccag cacggcgtcg acgtcggcca
     1141 gcgctagggc gagcacgtcg ggatccttga tcggctggtc ggccacgacg acctcccaac
     1201 ccgcggcgcg taacagggcg aggccgtctt catggatgcc gtcacaggcc aggactttca
     1261 tcgcgagctc ctttggagga agggagcgcg gagtcctgca gccggcgacg cgatgggcag
     1321 ccgcgcgggg cggcttcgga tacgggtcgg gaaacggggc cggctggcat gggaatccgc
     1381 gaccggcaca gcctagcaga gccgcgccgc gaatccgccc cgccgccgat gaaaacgctt
     1441 gcagcggcga cgggcgcgtg tcgcggcggt agacgcggtc gcgaaagggc cgcggcgtat
     1501 aatttcgccc ctcttgccgc gcgtccgcgg cgtccctgca ggtcctccca tgtcgcaagc
     1561 cctgatgaaa gccctggtca agcgcgagcc cgccaagggc atctggatgg aggaggtgcc
     1621 gatccccgcg ccgggcccca atgaagtgct gatcaggctg gaaaagaccg cgatctgcgg
     1681 caccgacctg cacatctacc tgtgggacga ctggagccag cgcacgatca ggccgggcct
     1741 gaccatcggc cacgaattcg tcggccgcat cgtcgacctc ggccccggcg tcaccggcta
     1801 caaggtcggc cagcgcgtgt cggccgaggg ccacatcgtc tgcggccatt gccgcaactg
     1861 ccgcgccggc cgccagcacc tgtgcccgaa cacggtcggc atcggcgtca accgcaacgg
     1921 cgcgttcgcc gaattcatcg tcatgccggc cagcaacctg tggccgatcc ccgaccagat
     1981 cccgagcgag ctggccgcgt tcttcgaccc gttcggcaat gccgcgcact gcgcgctgga
     2041 gttcgacgtg gtcggcgagg acgtgctgat caccggcgcc ggcccgatcg gcatcatcgc
     2101 cgccggcatc tgcaagttca tcggcgcgcg caacgtcgtc gtcaccgacg tcaacgacta
     2161 ccggctcaag ctcgccgccg acatgggcgc cacgcgcgtg gtcaacgtgg cgaacacctc
     2221 gctcaaggac gtgatggccg acctgcacat ggaaggcttc gacgtggggc tggagatgag
     2281 cggcaacccg cgcgccttca acgacatgct cgactgcatg taccacggcg gcaagatcgc
     2341 catgctcggc atcatgccca agggcgccgg cgccgactgg gacaagatca tcttcaaggg
     2401 cctgaccatc cacggcatct acggccggaa gatgtacgag acctggtaca agatgaccca
     2461 gctcgtgctg tcgggtttcc cgctcggcaa ggtcctcacc caccagctgc cgatcgacga
     2521 attccagcag ggcttcgaac tgatggaatc cggcaaggcg ggcaaggtcg tgctcagctg
     2581 gaactgatcc gtacgccagc ccctcgcagg agcccgcgca tccacgtgcg gtcttttcaa
     2641 ggaaacactg catgtccctg accgaacgct acgaagccgc cctcgacgag atccgcgacg
     2701 ccggcctgtt caaggccgag cgcatcatca ccagcccgca ggcggccgag atcaccctcg
     2761 ccgacggccg caaggtgctg aatttctgcg ccaacaacta cctcgggctc gccgaccatc
     2821 cggcgatgat ccaggcggcc aaggaagcgc tcgacacgca cggcttcggc atggcgtcgg
     2881 tgcgcttcat ctgcggcacg caggacctgc acaagcagct cgagcagacc atcgcggact
     2941 tcttcggcac cgaggacacg atcctctacg ccgcctgctt cgacgccaac ggcggcctgt
     3001 tcgaaccgct gctggacgag aacgacgcga tcatctccga cgcgctcaac catgcctcga
     3061 tcatcgacgg cgtgcgcctg tgcaaggcca agcgctaccg ctacgccaac tgcgacatgg
     3121 cggacctgga gaagcagctc cagcaggcca gggccgacgg cgcgcgcacg atcatggtca
     3181 cgagcgacgg cgtgttctcg atggacggct tcatcgcccc gctcgacgag atcaccgcgc
     3241 tggccaagaa gtacggcgcg ctcgtgcaca tcgacgaatg ccacgcgacc ggcttcctcg
     3301 gcgacaccgg ccgcggctcg gccgaggtca agggcgtact ggagaagatc gacatcttca
     3361 ccggcacgct cggcaaggcg atgggcggtg cgctcggcgg cttcaccacg gcgaagaagg
     3421 aagtcatcga gctgctgcgc cagcgctcgc gcccgtacct gttctcgaac tcgctgccgc
     3481 cgcacgtggt cgcggcgggg atcaaggcgt tcgagatgct gtcgtccgcg ggcgaactgc
     3541 gcacgcgcct gcgggagaac accgcgtatt tccgcgagcg gatgaccgcg gccggcttcg
     3601 acatcaagcc gggcgtgcac ccgatctgcc cggtgatgct gtacgacgcc ccgctcgcgc
     3661 agaagttcgc gcagcgcctg ctcgaggaag ggatctacgc gatcggcttc ttcttcccgg
     3721 tggtgcccaa gggccaggca cgcatccgca cgcagatctc ggcggcgcat gcgcgcgggc
     3781 acctcgaccg cgcgatcgat gccttcaccc gcatcgggcg cgaactgggc gtgctgaagg
     3841 cctgagcaaa gggacggacg ggccgcgcgc ggctccgtcc gtccatgcgt cgcttcagtc
     3901 cgccgcccgg gcggcctcgg gtgcgccctt ggcgacgcgg aagccgcgcg ccttcatcca
     3961 cgcgtcgaaa tcgtcggcgg tcatctgccg gccgttctgg gtcatcagga agcggttgct
     4021 cgtgtcgtgg ggcgcggcct ggaccagctt gggcgcggga cgatgggcct tcgtgcgcct
     4081 gcgtgcgacg gcggcgccca tgtcgaagtg cgcgtggcgg ccgatcgccg gcccatgggc
     4141 ggggccatgc cctgcggcgt gcgggccggg cgggggcgcg acggacgccg aggcgacggc
     4201 gggcgcgagg gtgacgcagg cgacacagaa cagcaggcag ggaagtgcct tcgcgaaaga
     4261 gcgcatcggt tttctccgga tgtcaccccc tgcgcctccg agtgtaggcg gccgcattca
     4321 tctggcagcg cagcaaatgc gtgcgcccga gcccatttca ggaagttcgc ggggatgccc
     4381 ctgccggtgg cgcttcaggc gcggcgctcc ttcccgcgtc aggaagcgcc atccccctgc
     4441 ccggccggcg gaccggcggt caaccgggcg acttcctccg cgcccagctc ccgccactgc
     4501 cccttcccca gcgagcccag cccgagatcg ccaatcgcca cgcgcacgag ccgcagcacg
     4561 gcgacgtcga aggcggcgag caggcggcgg atgtggcggt tgcgaccttc gtccagcacg
     4621 atctccagcc acgcgttctt ctgccctgcg cgcagcagcc gcacggaggc tgcccgcagg
     4681 cgcccgccgt ccgcctccac cccctcggcc agcgcacgca gcaggtccgc atccgggacg
     4741 cggtcgacct gcacgtgata ggtcttcagg gggccgcggc tgggatcggt gatcgccgcc
     4801 gcccacgccg gatcgttgct gagcagcaac aggccctcgc tggccttgtc gagccggccg
     4861 agcggtgcga gccatggcag cggcgcgcca tcgaggcagc ggtacaccgt gtcccgaccc
     4921 tgttcgtcgc gcgtgctcgt caccacgccg cgcggcttgt gcagcatcag gtagcagcgg
     4981 cgtgcggtgg tcgccggtcg accgtcgatg cggatcatgg catccggcag ggtgggcgcc
     5041 tcgggatcgc gcgccacccg gccgtcgacc tgcacccgtc cctcgccgac caggcgcgcc
     5101 gcctcgctgc gcgagcagat cccccgcttg gagatcaccc gggcaaggcc gtggcgggct
     5161 gcgtgcgcct ccgggccggc tgccgccccc agggtgcggg acgcgctccc gcgccccggt
     5221 ttccgcctca aggcctgggc ggatcggccg gcggcggcgc cggcaacgcc gggtcgccgg
     5281 cctggacagc ggccggggtg gcgccgcgcg ccacatgcac gccgcgcgct tccatccatg
     5341 cggcgaactc gtcggcggtc atcttcttgc cgttctggct catgttgaag cgccacggcg
     5401 tgttgtcgta ctgggtgcgt ggcttgtagg cggccggatt gtcggggccg acgacgccgg
     5461 tcgccggcgc ggcgttggcg agggcgaggc aatgcgccca ttgctgccga aggagcacgc
     5521 ggtcgaccgc cagcgacgcg tcgtaggcct gcgaaagcac gccggccggt tcgccgagcg
     5581 ggcgcgaggc gaaaccgagt tcatccgaca agggcgcgac gcccaccggc tgcaacggtg
     5641 cgacggggcc gggcgccggg caggaggagg catgcgccgc gatcggcatc gcgagcaggc
     5701 cgagaagcag caatggattg cgcatgggca cctccgacac tcgaattcgc gcagtgtagg
     5761 cgcgtgcacc gcacggctca atcgaaaccc accgcatgcc cggacgaggt tgcggtgttc
     5821 ggggcaaaaa aaagcccggc gctgggcgcc gggcttggtg tcgcgagcgg atgaacgctt
     5881 acttgttctg gacgttcagc tcggtgcgac ggttctgcgc gcgaccttcc ggattgtcgg
     5941 aaccgtccgg attggtgttc ggcgcgatcg ggcggctctc gccgtagccg ttcgggccga
     6001 ccaggcgcga ggcgtcgacg ccgttgctgg tcaggtagtc atagaccgcc ttggcgcgac
     6061 gctccgacag cttctggttg taggcgtcgg taccgacgga gtcggtgtgg ccggcgacct
     6121 cgaccttcag gtcgggatag cgcttcagga t
//
LOCUS       DATIQC010000279         7607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_266278, whole genome shotgun sequence.
ACCESSION   DATIQC010000279 DATIQC010000000
VERSION     DATIQC010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7607
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266278"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..999)
                     /gene="ccsA"
                     /locus_tag="VLM17_05905"
                     /pseudo
     CDS             complement(1..999)
                     /gene="ccsA"
                     /locus_tag="VLM17_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017171666.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
     gene            complement(1062..1556)
                     /gene="ccmE"
                     /locus_tag="VLM17_05910"
     CDS             complement(1062..1556)
                     /gene="ccmE"
                     /locus_tag="VLM17_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HSR65124.1"
                     /translation="MHPTRQRRLLLIVALLVAAALATTLIALALQRNVAYLYTPSEVL
                     KGEAGGHARFRLGGMVAADSFKRAPGTLEAHFDVDDGDARLPVVYTGILPDLFREKQA
                     VIATGHMQGRTFVADEVLAKHDETYMPKEVADKMGAAHRKHGVQGGSAPREGADVGAP
                     AVGQ"
     gene            complement(1619..1792)
                     /gene="ccmD"
                     /locus_tag="VLM17_05915"
     CDS             complement(1619..1792)
                     /gene="ccmD"
                     /locus_tag="VLM17_05915"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HSR65125.1"
                     /translation="MSYLPYVIAAYCVFAVVLGWDYLAPRLQVRAQLRAARLRVARRK
                     DAPRDLDAPLSRE"
     gene            complement(1789..2538)
                     /gene="ccmC"
                     /locus_tag="VLM17_05920"
     CDS             complement(1789..2538)
                     /gene="ccmC"
                     /locus_tag="VLM17_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016904032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease CcmC"
                     /protein_id="HSR65126.1"
                     /translation="MNPLVRWFHQLGSPPYFDRFAARWTPWAYALGLVAMAIGLYGAL
                     FQVPADYQQGDSFRILYIHVPSAWMSMAIFALMALYAAIALIWRIKLCEVLAMACAPA
                     GAAFTLITLLTGSIWGKPMWGTWWDWDPRLTTELILLFLYLGVIGLYNAIDDRRAAAR
                     AAGLLAIVGVALLPVIHYSVTWWNSLHQGQTISLFGKSHMDPSMLPPLWWMVAGTHVW
                     FFGSLLSRARADNLRREAGKDWVARLAGAAR"
     gene            complement(2672..3358)
                     /gene="ccmB"
                     /locus_tag="VLM17_05925"
     CDS             complement(2672..3358)
                     /gene="ccmB"
                     /locus_tag="VLM17_05925"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HSR65127.1"
                     /translation="MDGNASLSSAARALLARDLRLLWRRRGDALQPALFALLVVVLFA
                     LALGAEPRLLAKVAPAVLWVAALLAGLLALDTLFRGDAEDGSLEQWMLAPVPLSWLVL
                     VRTSMHWATTALPLLVATPFLAELLHLPAADLPVLLASLALGTPLLSLLGAVVAALTV
                     GMRRSGILVALLALPLYVPVLVFGAGSVAAAAQGLDYAGALLLLAAGLVLALVLAPLA
                     AAAAIRIALG"
     gene            complement(3363..4091)
                     /gene="ccmA"
                     /locus_tag="VLM17_05930"
     CDS             complement(3363..4091)
                     /gene="ccmA"
                     /locus_tag="VLM17_05930"
                     /EC_number="7.6.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015439 - ABC-type heme transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC exporter ATP-binding protein CcmA"
                     /protein_id="HSR65128.1"
                     /translation="MSEHPSAPPLLAARGLQFARNEQPVFGPLDFAVDAGEALLVQGD
                     NGVGKTTLLRVLAGLLQADGGEVDVDGRSASPALRARAIAYLGHLPALKADLTALENL
                     RFLCGLHGRRRAQVPETAMAIVGLAGYEDALARQLSAGQKKRLSLARLWLSPSPLWLL
                     DEPYANLDLEGINLVNRMVQAHLREGGAALLTTHGAYAAPPVRTRMLVMGEERRSADL
                     LSASAAAPNARPRMAGPGDPKATE"
     gene            complement(4129..4608)
                     /locus_tag="VLM17_05935"
     CDS             complement(4129..4608)
                     /locus_tag="VLM17_05935"
                     /inference="COORDINATES: protein motif:HMM:NF023125.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3293 domain-containing protein"
                     /protein_id="HSR65129.1"
                     /translation="MIPHLFEDAHITALAHAYLAADYRWEFDGQWRELVIGEAAPDPE
                     ARFVDAMEFGLVTAWNPHSVIRPERANRVADDALQAELAAGGTDFRPGFAAAHNRSWR
                     EPGWLVAGMPMAALDALAQRYGQLGTLYWRRGAPVRLRLFHAQPVGWPGSPWVDWIE"
     gene            4701..5870
                     /locus_tag="VLM17_05940"
     CDS             4701..5870
                     /locus_tag="VLM17_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HSR65130.1"
                     /translation="MPNPVTSKLPNVGTTIFTVMSQLAAEHHAVNLGQGFPDFPVPAR
                     LVEELDKAMRAGHNQYAPMSGVPALREAIAAKTARCYGWRPDADREVTVASGASEAIF
                     DAVQAVVRPGDEVIVLDPCYDCYEPAIDLAGARAVHVPLGLSGNGPATFAPDWQRVRD
                     AITPKTRMLMINSPHNPSGAMLTAQDMAAVAEILRGTGIFLLSDEVYEHIVFDGRRHE
                     SALLTPELRERAFVVSSFGKTYHCTGWKIGYCIAPPALTAEFRKVHQYNTFCSFTPAQ
                     HAFAAMIQAEPGHYEQLGAFYQAKRDRFQAQLETTRLRALPVPGGYFQLIDYSAITDL
                     DDLAFCRWLTIEHGVTAIPLSPFYQAPPPGQRLARLCFAKNELTLEMAVARLQQL"
     gene            5992..7083
                     /gene="alr"
                     /locus_tag="VLM17_05945"
     CDS             5992..7083
                     /gene="alr"
                     /locus_tag="VLM17_05945"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008784 - alanine racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HSR65131.1"
                     /translation="MARPTSATIHTDALRHNLGEVRRRAPHSRVMAVVKADGYGHGLE
                     RVARALSGADAFGVAALSDAERLRAAGLSQPVVLLSGFNEADDIAQLRRLNVETVVHH
                     AVQLEMLEQAPAGEPIRCWLKVDSGMHRLGFAAEDVRAAHARLAALPAVAPDIVLMNH
                     FASSDEFADSHSQGRQTRAQLELFAQATAGLPGVRSLANSAAVLGWRQAHADWVRPGG
                     ALYGISVVDGKSGADFGLRPAMTLATRLIAVNRIRKGERIGYSATWECPEDMPVGVAA
                     IGYGDGYPRHAPAGTPVLLNGRRADIIGRVSMDLMTIDLRGQPDAKPGDPVVLWGPGL
                     PVETIAQAAGTIGYEPVCSITRRVRFVED"
     gene            7299..>7607
                     /locus_tag="VLM17_05950"
     CDS             7299..>7607
                     /locus_tag="VLM17_05950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65132.1"
                     /translation="MKTRLRDAGGIVLGALALAAVSLLAGDRLGAPLWLANGLLLGAA
                     LRAPRDARSWLPIALLLDGGLRVALGAPWPLAGLLALADGTELLLAFGLLHALRRRAE
                     D"
BASE COUNT         1153 a         2763 c         2757 g          934 t
ORIGIN      
        1 cgcgcgcagc gcgtacagca gcagcgagcc gccgatgacg atgccgagga acaccagcac
       61 gaacaggccg cgggtcgggt cggcggcgaa ggcgtgcacg ctggtcagca cgcccgagcg
      121 caccaggaag gtgccgatca gctacagcga gaacgcggct atcgccagca gcagggtcca
      181 gccgcggaag ctgccgcgct tctcggtcac cgcctgcgaa tgcagcagcg ccgcgccggc
      241 gagccacggc atgaagctgg cgttctcgac cggatcccag aaccaccagc cgccccagcc
      301 gagttcgtag tacgcccacc acgaaccgat cgcgatgccg atggtgagga agccccacgc
      361 gaggttggtc cacggccgcg tccagcgcag ccagcgcgcg tcgatgccgt cgccgagcag
      421 cgcggcgatc gcgaacgcga acggcaccga gaagccgacg tagccgaggt acagcagcgg
      481 cgggtgcgcg atcatccccg ggtcctgcag cagcgggttg aggtcgcggc cctccaccgg
      541 cgccggcagc aggcggccga acggattgct ggtgaagatc aggaaggcga ggaagccggt
      601 cgcgaccagc cccatcacgc cgagaacgcg cgcgatgacc tgcggcggca ggcggcgcga
      661 gaagcgcgcc accgcaccgg tccacagggc gaggatcagc gcccacagca gcagcgaccc
      721 ctcgtgcgaa ccccacacgg cggtgaagcg gtagtaccag ggcagcaggg tgttgctgtt
      781 ctcggcgatg tagcgcaccg agaagtcctg cgcctcgaag gagaaggtga gcacgccgaa
      841 ggcgaacgcg accagcgcga gctgcgcata ggcggccggc cgtgccaccg ccatccacgc
      901 gccgatgccg cgctgcgcgc cggtgagcgg cagcgccgcc tgcagcgcgg cgaccagcag
      961 cgcgaggatg agcgcgaatt gaccgagttc gggcagcatc ggttactcct tccccagcgg
     1021 gcaggggaag ccaggggcgc gggcgggagc ggcggcgcgg ctcactggcc caccgccggc
     1081 gcgccgacgt cggcgccctc gcgcggcgcg ctgccgccct gcacgccgtg cttgcgatgc
     1141 gcggcgccca tcttgtcggc gacttccttc ggcatgtagg tctcgtcgtg cttggccagg
     1201 acctcgtcgg cgacgaaggt gcggccctgc atgtggccgg tggcgatcac cgcctgcttt
     1261 tcgcggaaca ggtcgggcag gatgccggtg tacaccaccg gcaggcgcgc atcgccgtcg
     1321 tcgacgtcga agtgcgcctc cagcgtcccg ggcgcgcgct tgaaggagtc ggccgcgacc
     1381 atgccgccga ggcggaagcg cgcgtggccg ccggcctcgc ccttgagcac ttccgagggc
     1441 gtgtacaggt aggcgacgtt gcgctgcagg gcgagggcga tcagcgtggt cgcgagcgcc
     1501 gccgcgacga gcagcgcgac gatcagcagc aggcggcgtt ggcgggtggg atgcatggtt
     1561 gcgtgggttc cgtcatcccc gcgggcgggg acagtcgtgc ggcaaattgc cgctttcttc
     1621 attcgcgcga cagcggcgcg tccaggtcgc ggggcgcgtc cttgcggcgc gccacgcgca
     1681 gccgcgccgc acgcagctgc gcgcgcacct gcagccgcgg cgcgaggtaa tcccagccga
     1741 gcaccacggc gaagacgcag taggcggcga tgacgtaggg caggtagctc atcgcgccgc
     1801 ccccgccagc cgcgccaccc agtccttgcc cgcctcgcgg cgcaggttgt cggcgcgcgc
     1861 gcgggagagc agcgagccga aaaaccacac gtgcgtgccc gcgaccatcc accacagcgg
     1921 cggcagcatg ctgggatcca tgtgcgactt gccgaacagg ctgatcgtct ggccctggtg
     1981 cagcgagttc caccaggtca ccgaatagtg gatgaccggc agcagcgcca ccccgacgat
     2041 cgcgagcagg ccggcggcgc gcgcggcggc gcggcggtcg tcgatcgcgt tgtacaggcc
     2101 gatcacgccg aggtagagga acagcaggat cagttcggtg gtcaggcgcg gatcccagtc
     2161 ccaccacgtg ccccacatgg gcttgcccca gatcgaaccg gtcagcaggg tgatcagggt
     2221 gaacgcggcg ccggcgggcg cgcaggccat cgccaggacc tcgcacagct tgatccgcca
     2281 gatcagcgcg atggcggcat acagcgccat cagggcgaag atcgccatgc tcatccaggc
     2341 gctcggcacg tggatgtaga ggatccggaa gctgtcgccc tgctggtagt cggcaggcac
     2401 ctggaacagc gcgccgtaca ggccgatcgc catcgcgacg agcccgagcg catacgccca
     2461 cggcgtccag cgcgcggcga agcggtcgaa gtaggggggc gacccgagtt ggtggaacca
     2521 gcggacgaga ggattcattg cgggtttccg cccgcggccg ggcggggaga cggggtattt
     2581 tcgccgatcg cgccggcgcg tggcttgatc ccgcgcaact ggcggacatc aggcgccagc
     2641 ccggcccggc cttcccctcg ggcccggcct ttcacccgag ggcgatgcgg atcgccgccg
     2701 ccgcggccag cggcgccagc accagcgcga gcaccaggcc tgcggcgagc agcagcagcg
     2761 cgccggcgta atccagcccc tgcgcggccg cggcgacgct gccggcgccg aacaccagca
     2821 ccggcacgta cagcggcagc gccagcagcg cgaccaggat gccggaacgg cgcatgccga
     2881 ccgtcagcgc cgcgaccact gcgccgagca ggctcagcag cggtgtgccc agcgcgagcg
     2941 aggccagcag caccggcagg tcggcggcgg gcaggtgcag gagttcggcg aggaagggcg
     3001 tggcgacgag cagcggcagc gcggtggtcg cccagtgcat ggaggtgcgc accagcacca
     3061 gccacgacag cggcaccggc gccagcatcc actgctcgag cgagccgtcc tcggcgtcgc
     3121 cgcggaacag ggtgtcgagc gcgagcagtc cggcgagcag cgccgccacc cacagcaccg
     3181 ccggcgcgac cttcgccagc aggcgcggct ccgcgccgag cgccagcgcg aacaggacca
     3241 ccaccagcag cgcgaacagc gccggctgca gcgcatcgcc gcggcggcgc cagagcaggc
     3301 gcaggtcgcg ggcgagcagg gcgcgggcgg ccgaggaaag gcttgcgttg ccgtccatgg
     3361 cgttactccg ttgccttcgg atcgcccggc ccggccatcc gtggccgggc gttcggggcg
     3421 gcagccgatg ccgacaggag atcggcagag cgccgctcct cacccatcac cagcatccgc
     3481 gtgcgcaccg gcggcgccgc gtaggcgcca tgggtggtca gcagcgccgc gccgccttcc
     3541 cgcagatgcg cctgcaccat ccggttgacg aggttgatgc cctcgaggtc gaggttggca
     3601 tagggctcgt cgagcagcca cagcggcgac ggcgacagcc acaggcgcgc gagcgacagc
     3661 cgcttcttct gcccggccga caactggcgg gcgagggcgt cctcgtagcc ggccaggccc
     3721 acgatcgcca tcgccgtctc cggcacctgc gcgcgccggc gaccgtgcag gccgcacagg
     3781 aagcgcaggt tctccagcgc ggtgaggtcg gccttcagcg cgggcaggtg gccgaggtag
     3841 gcgatcgcgc gggcgcgcag cgcggggctc gcgctgcggc catcgacgtc gacctcgcca
     3901 ccgtcggcct gcagcagtcc tgccagcacg cgcagcagcg tggtcttgcc gacgccgttg
     3961 tcgccctgca ccagcagcgc ctcgcccgcg tccacggcga agtcgagcgg gccgaacacc
     4021 ggctgctcgt tgcgcgcgaa ctgcaggccg cgtgcggcca gcagcggcgg ggcggaagga
     4081 tgctcggaca tcggcgaggg gagcggcgcg gagaggcgcg ccagccgctc attctatcca
     4141 gtcgacccag ggcgaccccg gccagccgac cggctgcgca tggaacagcc gcagccgcac
     4201 cggcgcaccg cgccgccagt acagggtgcc gagctggccg taacgctgcg ccagcgcgtc
     4261 gagcgccgcc atcggcatgc ccgcgaccag ccagcccggc tcgcgccagc tgcggttgtg
     4321 cgcggcggcg aaaccgggac ggaagtcggt accgcccgcc gccagctcgg cctgcagcgc
     4381 gtcgtcggcg acgcggttgg cgcgttccgg ccggatcacc gaatgcgggt tccaggcggt
     4441 gacgaggccg aactccatgg catcgacgaa gcgcgcctcg ggatccggcg ccgcttcgcc
     4501 gatcaccagc tcgcgccact ggccgtcgaa ctcccagcga tagtccgctg cgagataggc
     4561 gtgggcgagc gcggtgatgt gcgcgtcttc gaacagatgg gggatcacgg gcggaggatc
     4621 atcacggggc gacggtgata ccggcgtgct acaaagcggg cattgtaccg gcatcccccg
     4681 cgccggcttc catgaacgcg atgccaaatc ccgtgacgtc caagctgccg aacgtcggca
     4741 ccaccatctt caccgtcatg tcgcagctgg ccgccgagca ccacgcggtc aacctcggcc
     4801 agggcttccc ggacttcccg gtgcccgcgc gcctcgtcga ggagctcgac aaggccatgc
     4861 gcgccggcca caaccagtac gcgccgatga gcggggtgcc ggcgctgcgc gaagcgatcg
     4921 ccgccaagac cgcgcgctgc tacggctggc ggcccgacgc cgaccgcgag gtcaccgtcg
     4981 cctccggcgc ctccgaggcg atcttcgacg ccgtccaggc ggtggtgcgg cccggcgacg
     5041 aggtcatcgt cctcgacccc tgctacgact gctacgagcc ggcgatcgac ctggccggcg
     5101 cgcgtgccgt gcacgtgccg ctgggcttgt ccggcaatgg cccggcgacc ttcgcccccg
     5161 actggcagcg cgtgcgtgat gcgatcacgc cgaagacgcg catgctgatg atcaacagcc
     5221 cgcacaaccc gtccggcgcg atgctcaccg cgcaggacat ggcggcggtc gcggagatcc
     5281 tccgcggcac cggcatcttc ctgctctcgg acgaggtgta cgaacacatc gtgttcgacg
     5341 gacgccggca cgagtcggcg ctgctgacgc ccgaactgcg cgagcgtgcc ttcgtcgtct
     5401 ccagcttcgg caagacctac cactgcaccg gctggaagat cggctactgc atcgcgccgc
     5461 cggcgctgac cgccgaattc cgcaaggtcc accagtacaa caccttctgc agcttcaccc
     5521 cggcgcagca cgccttcgcc gcgatgatcc aggccgagcc cgggcactac gaacagctcg
     5581 gcgcgttcta ccaggccaag cgcgaccgct tccaggcgca gctggagacc acccgcctgc
     5641 gcgcgctgcc ggtgccgggc ggctacttcc agctgatcga ctattcggcc atcaccgacc
     5701 tcgacgacct cgcgttctgc cgctggctga ccatcgagca cggggtgacc gcgatcccgc
     5761 tgtcgccgtt ctaccaggca ccgccgccgg gccagcgcct tgcccggctg tgcttcgcca
     5821 agaacgagct gacgctggag atggcggtcg cgcgcctgca gcagctgtga tgccgtagcg
     5881 cgggcaggag gccaccgggg tcgcgcaagg acgaccccgg cgcgctgcgg cctggccgaa
     5941 ccgtttcgac tgacctgcgg ggagatcgcg ccgcgctggc aaaatacgcc catggcccga
     6001 cccacttccg ccaccatcca caccgacgcc ctccgccaca acctcggcga ggtgcgccgc
     6061 cgcgcgcccc acagccgggt gatggcggtg gtcaaggccg acggctacgg ccacgggctg
     6121 gagcgcgtcg cgcgcgcgct gtccggcgcc gatgcgttcg gcgtcgccgc gctgtccgac
     6181 gccgagcgcc tgcgcgcggc cggcctgtcg cagccggtcg tgctgctgtc gggcttcaac
     6241 gaggccgacg acatcgccca gctgcgccgg ctcaacgtcg agaccgtcgt ccaccacgcg
     6301 gtgcagctgg agatgctcga acaggcgccg gcgggcgagc cgatccgctg ctggctcaag
     6361 gtcgacagcg gcatgcaccg gctcggtttc gccgccgagg acgtgcgcgc ggcgcacgca
     6421 cggctcgcgg cgctgcccgc ggtggcgccg gacatcgtgc tgatgaacca tttcgcgagc
     6481 tccgacgagt tcgccgattc gcactcgcag ggccggcaga cccgcgcgca gctggagctg
     6541 ttcgcgcagg ccaccgcggg cctgccgggg gtgcgctcgc tggccaactc cgcggcggtg
     6601 ctcggctggc ggcaggcgca cgccgactgg gtgcggcccg gcggcgcgct gtacggcatc
     6661 tcggtggtgg acgggaagag cggcgccgac ttcggcctgc gcccggcgat gacgctggcg
     6721 acgcggctga tcgcggtcaa ccgcatccgc aagggcgagc gcatcggcta ttcggcgacc
     6781 tgggaatgtc ccgaggacat gccggtcggc gtcgccgcga tcggttacgg cgacggctac
     6841 ccacggcacg cgccggcggg cacgccggtg ctgctcaacg ggcgccgcgc ggacatcatc
     6901 ggccgcgtgt cgatggacct gatgaccatc gatctgcgcg ggcagcccga tgcgaagccg
     6961 ggcgatccgg tggtcctgtg ggggccgggc ctgccggtcg aaaccatcgc gcaggcggcc
     7021 ggcacgatcg gttacgagcc ggtctgctcg atcacccggc gggtgcgctt cgtcgaggac
     7081 tgaacgtgcg gcggcgcacg ccacgcccgt ggcgtgaacc tcgtcgtgaa ggcctgtgcc
     7141 gtgcgtcgcg gcccgcgcat cggctggcgg ccgggccgcc ggatagcgaa cccgcgcaca
     7201 caatcgccgc gccgcgactg gctagatagg cggaaccggg cgggggcccg gaggtacgca
     7261 cgcgcccacg aatggacgga tccgcacccc ggacggcaat gaagacgcgc ctgcgcgacg
     7321 ccggcggcat cgtgctgggc gcgctcgcgc tcgcggcggt ctcgctgctg gccggcgacc
     7381 gcctcggcgc gcccctgtgg ctcgccaacg gcctgctgct cggcgccgcg ttgcgcgccc
     7441 cgcgcgatgc gcgctcgtgg ctgccgatcg ccctgctgct cgacggtggc ctgcgcgtcg
     7501 cgctcggggc gccgtggccg ctggccgggc tgctcgcgct cgccgacggc accgaactcc
     7561 tgctcgcgtt cgggttgctg cacgccctgc ggcgccgcgc ggaggac
//
LOCUS       DATIQC010000280         4071 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_442609, whole genome shotgun sequence.
ACCESSION   DATIQC010000280 DATIQC010000000
VERSION     DATIQC010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442609"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..618)
                     /locus_tag="VLM17_05955"
     CDS             complement(<1..618)
                     /locus_tag="VLM17_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit alpha"
                     /protein_id="HSR65133.1"
                     /translation="MGVIVGVAREAAPGERRTALTPETCRKFVAAGARVRIEAGVGGD
                     AGFGDAAYRDAGAELVADARAALADADLVLCVQAPPVERIALLKHGATLVGVLQPQAD
                     PARAEALAARGIVAFPLERLPRTTRAQAMDVLSSQAGMAGYKAVLLAGWLAPRFFPML
                     TTAAGTIRPSKVLVVGAGVAGLQAIATARRLGAQVEGFDVRPETRE"
     gene            complement(689..2857)
                     /locus_tag="VLM17_05960"
     CDS             complement(689..2857)
                     /locus_tag="VLM17_05960"
                     /inference="COORDINATES: protein motif:HMM:NF019410.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1631 family protein"
                     /protein_id="HSR65134.1"
                     /translation="MSTQTPGLSSVAVADPVRLLEDLRRTAVEQLGAVPGGLYRPIEE
                     QLHEALRQGAPGTHRRDLMTVLALRQRGSSYVMRYRELIARSFEDFRGRFSISRPGLP
                     LGLVRENELDFHLAGQRLAESIGRQYQRPLELLDLRFEGLARVLGAPPTSNPVGASRL
                     AGAFLQTFRDAEISETLQPLLFRQYEQELGKVLGALYGRLNAQLVAAGFHADVRRDVG
                     GPPAPGATPAATPVPAPAPMPREGAGPADLFRVSAEARVEHQRLRDMLHVWRAGRMAP
                     SGARPDARELRVQEINTVASLLQNEGTKQYEAAFAGSGELSLAIRRQLEDGARRLGID
                     PEATRLGQQQEDAIDLVGLMFESLVQSHALVSQAQRLYARLVMPYVRVALADENLFVR
                     ADHPARRLLDALTLSCESNDGASPQDRELLQSANRAVERVVAEYNEDLAIFEVAANEL
                     QDLLQQQRRRAEVVERRSMETVHGRERLLQARLQAAAALAQRTAAQPLTDTVADFLEQ
                     HWQHHVVQVGLREGTASQAWERAMAMADELVAIDIAAARREGGRVATRVLALEPSLIE
                     CVSSSGLDAQAAGEWMTTLARALGFPDRERMPRPAPPMQLADDSEDTRLLHVVGGHAS
                     LDFDPAVAERMRALQPGNWLRLVDEHGEEGSVKVAWISPLTSRLLLVNRRGVRKLVAS
                     AEQLAALARSGNLLLDAADMPVDEAMRQVRQRLDQVARAA"
     gene            2988..3563
                     /locus_tag="VLM17_05965"
     CDS             2988..3563
                     /locus_tag="VLM17_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HSR65135.1"
                     /translation="MSGLLACVDSRRSVPAKQLGAPGPDEPALLRMLQSAVRVPDHGK
                     RVPFRFLRIAGEARIALGERLAAITRTRDPAAGDTALDKDRHRFAHAPVVVAVVARLG
                     ADEKIPESERFSSASCVCFALLQAAQGCGFGAQWLTGWPAYDREVLQLLGLADDERIA
                     GFIHIGTPKLDAPERERPDPRALLQDWTPPA"
     gene            3560..>4071
                     /locus_tag="VLM17_05970"
     CDS             3560..>4071
                     /locus_tag="VLM17_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004144855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease IX"
                     /protein_id="HSR65136.1"
                     /translation="MSDGASRPDTHGIRPTLHLVDASLYVFRAWHSMPDEFRDADGWP
                     TNAVHGFARFLLELLERERPRQIAVAFDEALDSCFRNALYPAYKANRDPAPEELKRQF
                     AHCKALCAALGLATLAHADYEADDLIGSALHHARTRGLRGVIVSADKDLSQLLDEHDE
                     QWDFARGQRWG"
BASE COUNT          550 a         1498 c         1475 g          548 t
ORIGIN      
        1 ctcgcgcgtt tccggacgca cgtcgaagcc ctcgacctgc gcgccgagcc ggcgcgcggt
       61 ggcgatcgcc tgcagcccgg cgacgccggc gccgaccacc agcaccttcg atggccggat
      121 cgtgccggcg gcggtggtga gcatcgggaa gaagcgcggc gccagccacc cggccagcag
      181 cacggccttg tagccggcca tgcccgcctg cgagctgagc acgtccatcg cctgcgcgcg
      241 ggtggtgcgc ggcaggcgct cgagcgggaa ggcgacgatg ccgcgcgcgg ccagggcttc
      301 ggcgcgcgcc ggatcggcct gcggctgcag cacgcctacc agcgtggcgc cgtgcttcag
      361 cagcgcgatg cgttcgaccg gtggcgcctg cacgcacagc acgaggtcgg cgtcggcgag
      421 cgccgcccgc gcatccgcca cgagctcggc gccggcatcc cgataggccg catccccgaa
      481 gcccgcgtcg ccgcccacgc cggcttcgat gcgcacgcgc gcgccggcgg ccacgaactt
      541 gcggcaggtt tccggcgtga gcgccgttcg ccgttcgccc ggcgcggctt cgcgcgccac
      601 tcccacgatc acgcccatcg cgcccccaac aggagaaccg cccgcatcct agcgaatgcg
      661 ggcggccgat ggtgcggcga gtggcggatc aggcggcgcg agcgacctgg tcgaggcgct
      721 ggcgcacctg gcgcatcgcc tcgtcgacgg gcatgtcggc cgcatccagc aggaggttgc
      781 cggacctggc cagcgcggcg agctgctcgg ccgaggccac cagcttgcgc acgccgcggc
      841 ggttgaccag cagcaggcgc gaagtcagcg ggctgatcca ggcgaccttc accgagcctt
      901 cctcgccatg ctcgtcgacc aggcgcagcc agttgcccgg ctgcagcgcg cgcatgcgct
      961 cggcgaccgc cggatcgaag tcgaggctcg cgtgcccgcc gaccacatgc agcaggcgcg
     1021 tgtcctcgct gtcgtcggcc agctgcatgg ggggcgccgg ccgcggcatg cgttcgcggt
     1081 cggggaaccc gagcgcacgc gcgagcgtgg tcatccattc gcccgcggcc tgtgcatcca
     1141 ggcccgagct cgacacgcac tcgatcagcg acggttccag cgccagcacg cgggtggcga
     1201 cgcggccgcc ctcgcggcgg gccgcggcga tgtcgatcgc gacgagctcg tcggccatcg
     1261 ccatggcccg ctcccacgcc tgcgaagcgg tcccttcgcg cagccccacc tgcaccacgt
     1321 ggtgctgcca gtgctgctcg aggaaatcgg cgacggtgtc ggtcagcggc tgcgcggcgg
     1381 tgcgctgcgc gagcgcggcg gcggcctgca ggcgggcctg cagcaggcgc tcgcggccgt
     1441 gcacggtttc catcgagcgg cgctcgacga cctcggcgcg gcggcgttgc tgctgcagga
     1501 ggtcctgcag ttcgttggcg gcgacttcga agatggcgag gtcttcgttg tactcggcga
     1561 ccacgcgctc gaccgcgcgg ttggcgctct gcagcagttc gcggtcctgc ggcgaggcgc
     1621 cgtcgttgct ttcgcagctg agcgtcagcg cgtcgagcag gcgtcgcgcc gggtggtcgg
     1681 cccgcacgaa caggttctcg tcggccagcg cgacgcggac gtagggcatc accagccgcg
     1741 catacaggcg ctgcgcctgc gagaccagcg cgtggctctg caccagcgat tcgaacatca
     1801 agccgaccag gtcgatggcg tcttcctgct gctggccgag ccgggtggcc tcgggatcga
     1861 tgccgagccg acgcgcgccg tcttcgagct ggcggcggat cgcgagcgac agttcgccgg
     1921 aaccggcgaa ggcagcctcg tactgcttcg tgccctcgtt ctgcagcagc gaagccacgg
     1981 tgttgatttc ctgcacgcgc agctcgcgcg catccggcct tgcgccggac ggcgccatcc
     2041 gtccggcgcg ccagacgtgc agcatgtcgc gcaggcgctg gtgctcgacg cgcgcctcgg
     2101 cggacacgcg gaacaggtcg gccggacccg cgccctcgcg cggcatcggt gccggcgccg
     2161 gcacaggcgt ggccgcgggc gtcgcgccgg gcgcgggcgg accgccaacg tcacgacgca
     2221 cgtccgcgtg gaagccggcg gcgaccagct gcgcattgag gcgcccgtac agcgcgccga
     2281 gcaccttgcc gagttcctgc tcgtactggc ggaacagcag cggctgcagc gtttcggaga
     2341 tttccgcatc gcggaaggtc tgcaggaagg cgcccgccag gcgcgaggcg cccacgggat
     2401 tgctggtcgg cggcgcgccg agcacgcgcg cgaggccttc gaagcgcagg tcgagcagtt
     2461 ccagcgggcg ctggtactgg cggccgatgg attcggcgag gcgctggccg gcgaggtgga
     2521 aatccagttc gttctcgcgc accaggccga gcggcaggcc cgggcgggaa atggagaagc
     2581 ggccgcggaa gtcctcgaag ctgcgcgcga tcagctcgcg gtagcgcatg acgtagctgg
     2641 agccgcgctg gcgcagtgcg agcaccgtca tgaggtcgcg gcggtgcgtc ccgggcgcac
     2701 cctggcgcag cgcctcgtgc agctgctcct cgatcgggcg atagagcccg ccgggcaccg
     2761 ctccgagttg ctccaccgcc gtgcggcgca ggtcctcgag caggcggacg ggatcggcga
     2821 cggccacgga cgacaggcca ggagtctggg tggacaagag tacctccccg cgaccggctc
     2881 gggggtgccg gatcgccttt cgctggagca tagtggcacc atgaaggccg tccaccggct
     2941 gtttcggatt ctgtgatgcc attcccagtc ccgccgcggg cctgccgatg agcgggctgc
     3001 tcgcctgcgt cgactcccgc cgttccgtcc ccgcgaagca gctcggcgcg cccggtcccg
     3061 acgaacccgc ccttttgcgc atgctgcagt cggcggtgcg cgtgcccgac cacggcaagc
     3121 gcgtgccctt ccgcttcctg cgcatcgccg gcgaagcacg catcgcgctc ggcgagcggc
     3181 tcgcggcgat cacgcgcacg cgcgatccgg ctgcgggcga cacggcgctc gacaaggacc
     3241 gccatcgctt cgcgcacgcg ccggtggtgg tcgcggtcgt cgcgcgcctc ggtgccgacg
     3301 agaagatccc cgaatccgaa cgcttctcca gcgcctcgtg cgtgtgcttc gcactgctgc
     3361 aggcggcgca gggctgcggc ttcggcgcgc aatggctgac cggctggcct gcctacgacc
     3421 gcgaggtgct gcagctgctc ggcctcgccg acgacgaacg catcgccggc ttcatccaca
     3481 tcggcacgcc gaagctcgac gcgcccgagc gcgagcggcc cgacccgcgc gcgctgctgc
     3541 aggactggac gccgccggca tgagcgacgg ggcctcccgg ccggacaccc acggcatccg
     3601 cccgaccctg cacctggtcg acgccagcct gtacgtgttc cgcgcctggc attcgatgcc
     3661 ggacgaattc cgcgacgccg acggctggcc gaccaacgcc gtgcacggct tcgcgcgctt
     3721 cctgctcgaa ctgctcgagc gcgaacggcc gcggcagatc gcggtcgcct tcgacgaggc
     3781 gctcgacagc tgcttccgca acgcgctgta tccggcctac aaggccaacc gggacccggc
     3841 tccggaggaa ctcaagcgcc agttcgcgca ctgcaaggcg ctgtgcgccg cgctcggcct
     3901 ggcgacgctg gcgcacgccg actacgaggc agacgacctg atcggcagcg cgctgcacca
     3961 cgcgcgcacg cgcgggctgc gcggggtcat cgtgtccgcc gacaaggacc tctcgcagct
     4021 gctcgacgag cacgacgagc aatgggactt cgcccgcggc cagcgctggg g
//
LOCUS       DATIQC010000281         2709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_160002, whole genome shotgun sequence.
ACCESSION   DATIQC010000281 DATIQC010000000
VERSION     DATIQC010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_160002"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /gene="mtnC"
                     /locus_tag="VLM17_05975"
     CDS             complement(<1..414)
                     /gene="mtnC"
                     /locus_tag="VLM17_05975"
                     /EC_number="3.1.3.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA];
                     GO_function: GO:0016862 - intramolecular oxidoreductase
                     activity, interconverting keto- and enol-groups [Evidence
                     IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone synthase"
                     /protein_id="HSR65137.1"
                     /translation="MTAPLILTDIEGTTSSISFVKDVLFPYARRELPRFVRERGDEPD
                     VRRWLDAVATENGGICSDDMIAETLQGWIDQDRKHTALKALQGMLWAGGYARGDYRAH
                     VYPDAVRSLRRWHDEGHALAVYSSGSAPAQRLFFGH"
     gene            complement(496..1047)
                     /locus_tag="VLM17_05980"
     CDS             complement(496..1047)
                     /locus_tag="VLM17_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone dioxygenase"
                     /protein_id="HSR65138.1"
                     /translation="MSRLRVFADDHPDEPLLVADATDAIARELQAIGVAFEQWEATQA
                     VQPGDPPEAIMDAYRADIDRLVAERGFRTVDVVSIAPDNPNREALRGKFLDEHFHQED
                     EVRFFVAGSGLFTLHVDGKVYEVLCEAGDLIAVPDRMTHWFDMGPEPSFVAIRFFTEP
                     EGWVGHFTGTDIARRFPRHEKAR"
     gene            complement(1044..1679)
                     /locus_tag="VLM17_05985"
     CDS             complement(1044..1679)
                     /locus_tag="VLM17_05985"
                     /EC_number="4.2.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose 1-phosphate dehydratase"
                     /protein_id="HSR65139.1"
                     /translation="MSAVPFDPQQLRHLAGEIITNVRELAAAGWTPATSSNFSRRLDD
                     HHAAITVSGRDKGRLTEADIMVVDLDGNAVATDHRPSAETLLHTQLYRRFPDIGCVLH
                     THSLVQTVASRLYAGAGHVHLEGYELLKAFPGTTTHDVEMDVPVLPNSQDMRTLAAQV
                     DALLDNQPMWGYLIDGHGLYAWGRDMAEARRHLDAFEFLLGCELELRKLCP"
     gene            complement(1784..>2709)
                     /locus_tag="VLM17_05990"
     CDS             complement(1784..>2709)
                     /locus_tag="VLM17_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSR65140.1"
                     /translation="FIALAFPAVSSAGFNPMLPNGWGTPLSGVGVLGAAASIFFAYVG
                     FDAVSTAAEETKNPNRNIPIGLIGSLGICTIFYLLVAYTAVGAVGSVDPAGAQPGGIL
                     SQSKEPLAFVLRSIGWSRVGDLVGIAAIVALPSVVLMMIFGQTRILFTMSRDGLLPER
                     LSRVHPRFHTPHVVTWITGVAVSLFAAMFPVDILADISNAGTLFAFFAVAIGVMVLRR
                     TEPNRPRPFRTPLVWIVGPLALAGCVLLFFSLGWNPTIKFFCIWAVIGLVVYFLYARR
                     RSHLAPGNEAKLHGIGDGLPPEPLVHQGPAA"
BASE COUNT          440 a          878 c          996 g          395 t
ORIGIN      
        1 gtggccgaaa aacagccgtt gcgccggcgc cgagccggag gaatacaccg ccagcgcgtg
       61 gccttcgtca tgccagcgtc gcaatgaccg gaccgcgtcc ggatagacgt gcgcgcggta
      121 gtcgccccgc gcgtaaccgc cggcccacag catcccctgc agcgccttga gcgcggtgtg
      181 cttgcggtcc tggtcgatcc agccctgcag cgtctccgcg atcatgtcgt cgctgcagat
      241 gcccccgttc tcggtggcga cggcgtccag ccagcgccgg acgtccggct cgtcgccgcg
      301 ctcgcgcacg aagcgcggga gttcgcggcg ggcgtagggg aacagcacgt ccttgacgaa
      361 ggagatggag gacgtcgtgc cttcgatgtc ggtgaggatg aggggggcgg tcatggattc
      421 atggactggt cgtccggcgg gaagccggga tccatcgtga gacgcggcag gccggcgccc
      481 gccgcgacgg tggcgtcatc gggccttttc gtgccggggg aaccgtcgtg cgatgtccgt
      541 gccggtgaaa tggccgaccc agccttccgg ctcggtgaag aagcggatcg cgacgaaact
      601 cggctccggg cccatgtcga accagtgggt catccggtcc ggcaccgcga tcaggtcgcc
      661 ggcctcgcac agcacctcgt agaccttgcc gtccacgtgc agggtgaaca ggcccgagcc
      721 cgcgacgaag aagcgcacct cgtcttcctg gtggaagtgc tcgtcgagga acttgccgcg
      781 caacgcctcg cggttggggt tgtccggtgc gatgctgacg acgtcgacgg tgcggaagcc
      841 gcgctcggcg accaggcggt cgatgtcggc acggtaggca tccatgatcg cttcgggcgg
      901 atcgcccggc tgcaccgcct gcgtggcttc ccattgttcg aacgccacgc cgatcgcctg
      961 cagttcgcgg gcaatggcat cggtcgcgtc cgcgacgagc agcggctcgt ccggatggtc
     1021 gtcggcgaag acgcgcaaac ggctcatggg cacagcttcc tcagttcgag ctcgcagccg
     1081 agcaggaatt cgaaggcgtc caggtgccgg cgcgcttcgg ccatgtcgcg gccccacgcg
     1141 tacagtccgt ggccgtcgat caggtagccc cacatcggct ggttgtcgag cagggcgtcg
     1201 acctgcgccg ccagcgtgcg catgtcctgc gagttgggca gcaccggcac gtccatttcc
     1261 acgtcgtgcg tggtcgtgcc gggaaaggcc ttgagcagtt cgtagccttc caggtgcacg
     1321 tggcccgcgc cggcatacag gcgcgatgcc accgtctgca ccagcgaatg ggtgtgcagc
     1381 acgcacccga tgtccgggaa gcggcggtag agctgggtgt gcagcagggt ttcggcggac
     1441 gggcggtggt cggtcgcgac ggcattgccg tcgaggtcga cgaccatgat gtcggcttcg
     1501 gtcagccggc ccttgtcgcg cccggagacg gtgatcgccg cgtggtggtc gtccagccgc
     1561 cgcgagaaat tgctgctggt cgcgggtgtc cagcccgccg cggcgagctc gcgcacgttg
     1621 gtgatgatct cgccggcgag gtggcgcagc tgctgcgggt cgaagggaac ggcgctcatg
     1681 cggaaagtgt agcgaaacgg ccgtgcaccg ccgtgcacgc aggggcccga aacgaacaga
     1741 cccggccggg gccgggtccg ttcgcaggca tcgcgccggg ccgtcaggcg gccgggccct
     1801 ggtggaccag cggttcgggc ggcaggccgt cgccgattcc gtgcagcttg gcttcgttgc
     1861 ccggcgccag gtggctgcgg cggcgcgcgt acaggaagta cacgaccagg ccgatcaccg
     1921 cccagatgca gaagaacttg atggtcgggt tccagccgag gctgaagaac agcagcacgc
     1981 agccggccag cgcgagcggg ccgacgatcc acaccagcgg ggtgcggaac gggcgcggac
     2041 ggttcggctc ggtgcgacgc aggaccatca cgccgatcgc gacggcgaag aacgcgaaca
     2101 gcgtgccggc gttggagatg tcggcaagga tgtccaccgg gaacatcgcc gcgaacagcg
     2161 acaccgcgac gccggtgatc caggtcacca cgtgcggggt atggaagcgc ggatgcacgc
     2221 gcgagagcct ctccggcagc aggccgtcgc gcgacatcgt gaacaggatg cgggtctggc
     2281 cgaagatcat catcaacacc acggacggca gcgccacgat cgcggcgatg ccgacgaggt
     2341 cgccgacccg ggaccagccg atgctgcgca ggacgaaggc cagcggctcc ttgctctgcg
     2401 agaggatgcc gcccggctgc gcgcccgccg gatccaccga gcccaccgcg ccgaccgcgg
     2461 tgtaggccac cagcaggtag aagatggtgc agatgccgag cgagccgatc aggccgatcg
     2521 ggatgttgcg gttgggattc ttggtttcct cggcggcggt ggacaccgcg tcgaagccga
     2581 cgtaggcgaa gaagatcgac gcggcggcgc cgagcacgcc cacgccggac agcggcgtgc
     2641 cccagccgtt cggcagcatg ggattgaagc cggcgctgct cacggcaggg aacgcgagtg
     2701 cgatgaacg
//
LOCUS       DATIQC010000282         2395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_513379, whole genome shotgun sequence.
ACCESSION   DATIQC010000282 DATIQC010000000
VERSION     DATIQC010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513379"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VLM17_05995"
     CDS             complement(<1..305)
                     /locus_tag="VLM17_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HSR65141.1"
                     /translation="MPGAPTSLANQLLVALPSLADPHFARSVTLLCQHDADGAMGVMV
                     NRASEYTLGEVFDQMGIASGDEALRARAVLAGGPVHPERGFVLHDGHTWDSSLEIAG"
     gene            383..1249
                     /locus_tag="VLM17_06000"
                     /pseudo
     CDS             383..1249
                     /locus_tag="VLM17_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010369342.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
     gene            complement(1511..>2395)
                     /locus_tag="VLM17_06005"
     CDS             complement(1511..>2395)
                     /locus_tag="VLM17_06005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003489921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HSR65142.1"
                     /translation="RFRVSCFYQRNQVGMVLRRIESKIPTVEELALPPIIKTLAMTKR
                     GIILFVGATGTGKSTSLAAMIGYRNQNSTGHIITIEDPIEFVHKHEGCIITQREVGID
                     TDSWDAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAMDR
                     IINFFPEDRRGQLLMDLSLNLKGVVAQQLIPTPDGKGRRVAMEILLGTPLVQDYIRDG
                     EVHKLKEVMKESTNLGMKTFDQSLFELYQAGEISYEDALRYADSANEVRLRIKLAQGG
                     DARTLAQGLDGVEVAEAK"
BASE COUNT          322 a          857 c          834 g          382 t
ORIGIN      
        1 tccccggcga tctccaggct cgaatcccag gtgtggccgt catgcagcac gaagccacgc
       61 tccggatgca ccggcccgcc ggccagcacc gcccgcgcgc gcaacgcctc gtccccgctg
      121 gcgatgccca tctggtcgaa cacctcgccg agcgtgtatt cggacgcccg gttgaccatc
      181 acgcccatcg cgccgtccgc gtcgtgctgg cacagcaggg tcacgctgcg ggcgaaatgg
      241 ggatcggcca gcgacggcag cgcgaccagc agctggttgg cgaggctcgt gggggcgccg
      301 ggcatgcgtg cattctacca gcgcccccgc ggcggtccgt gcctgcacgc gatcgccacc
      361 gcgccgcgcc gacgatgcgc ggatggcgat ccgcatcggc atctcgggct ggcgctacgc
      421 cccctggcgc ggcgtgttct acccgcgggg gctgccgcag cggcgcgaac tcgaatacgc
      481 ggcgcggtgc ttcgacagcg tcgagatcaa cggctcgttc tactcgctgc agacgccggc
      541 gagctattcc gcctggcacg atgcgacgcc gccgggcttc gtgttcgcgg tcaagggtcc
      601 gcgctacctc acccacatgc tgaagctgcg cggcgtggaa accccgctcg cgaacttctt
      661 cgcttcgggg ctgctgcggc tgggcgatcg actcgggccg atcctgtggc aactgccgcc
      721 gttcctgcgc ttcgaccccg accgcctcgc cgccttcttc gacctgctgc cccgcgacct
      781 cgagcaggcg caatcgctcg cccgacgccg ggacgccgcg cggatgcgtg gacgaagcgc
      841 gctggccatc gaaggcaaca tgccgttgcg gcatgcgctg gaggtgcgcc acgagagctt
      901 ccgcgatccc gccttcatcg acctgctgcg cgagcacgac atcgcgctcg tggtcgccga
      961 caccgcgggc cgctggccgc tgctcgagga cgtgaccgcc gatttcgtct acgtccgcct
     1021 gcatggcgac gaggagctgt acgtcagcgg ctacgacgac gctgcgctgg acgcgtgggc
     1081 cacgcgcgtc cgcgcatggg cgtcgggccg ccagcctcgc ggcgcgcggc gcgcgggcac
     1141 gcgtccgccg gcgaagcacg ggacgcgcga cgtgtactgc tacttcgaca acgacgccaa
     1201 ggtgcgcgcg ccgttcgacg cgctcggact gatgcggcgg ctcggcctgg cgaaacccgc
     1261 ggcccgctac gacgtggctg ccgccgacct cgcacgggag gacgccggcc acgcgcgtcg
     1321 ccgtcaaggc cgcgcgggcg ctgcggcaac cgcgggcgac cggccgcgcg cggagcgcgg
     1381 cacggcccgg gcgcgcggtg cgaggccgca gccgcggcca tgaaacgcga aaggagcggt
     1441 tgcccgctcc cttcggctcc gccacgcagg accgccggcc cccctcgcgt ccggcatccg
     1501 ccaggcggcc ttacttggct tccgccacct cgacgccgtc cagcccctgc gccagcgtgc
     1561 gcgcgtcgcc gccctgcgcc agcttgatgc gcaggcggac ctcgttggcc gaatcggcgt
     1621 agcgcagcgc gtcctcgtag gagatctcgc cggcctggta cagctcgaac aggctctggt
     1681 cgaaggtctt catgccgagg ttggtcgatt ccttcatcac ttccttgagc ttgtggacct
     1741 cgccgtcgcg gatgtagtcc tgcaccagcg gcgtgccgag caggatctcc atggcgacgc
     1801 ggcggccctt gccgtccggg gtcgggatca gctgctgcgc gaccacgccc ttgaggttca
     1861 gcgacaggtc catcaggagc tggccgcggc gatcctcggg gaagaagttg atgatgcggt
     1921 ccatcgcctg gttggcgttg ttggcgtgca gggtgcacag caccaagtgg ccggtttcgg
     1981 cgaaggcgat ggcgtgatcc atgccctcgc gggtgcgcac ctcgccgatc atgatcacgt
     2041 ccggcgcctg gcgcagggtg ttcttcagcg cggcgtccca gctgtcggtg tcgatgccga
     2101 cctcgcgctg ggtgatgatg cagccctcgt gcttgtgcac gaattcgatc gggtcctcga
     2161 tcgtgatgat gtggcccgtc gagttctggt tgcggtagcc gatcatcgcc gcgagcgagg
     2221 tcgacttgcc ggtgccggtg gcgcccacga acaggatgat gccgcgcttg gtcatcgcca
     2281 gggtcttgat gatcggcggc agcgccagct cctcgacggt cgggatcttc gattcgatcc
     2341 ggcgcaggac catgccgacc tggttgcgct gatagaagca gctgacgcgg aagcg
//
LOCUS       DATIQC010000283         1608 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_124720, whole genome shotgun sequence.
ACCESSION   DATIQC010000283 DATIQC010000000
VERSION     DATIQC010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124720"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VLM17_06010"
     CDS             <1..712
                     /locus_tag="VLM17_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HSR65143.1"
                     /translation="TTTLYAALNRLNTPDVKIITVEDPVEYQIEGINQIQAKPQIGLD
                     FANALRSSVRQDPDIIMIGEMRDLETSRIAIQSALTGHLVLSTLHTNNAAGGITRMLD
                     MGVEDYLLTSTVNGILAQRLVRRLEPTHAERYRASPEEIEKFGLRRYQPEGEVFLYRP
                     RGSALAPTGYLGRTTIVEFLVMDDELRRAVMRHAGMGELESLARKAGMRTMYEDGIAK
                     ALAGVTTIEEVLRVTEDA"
     gene            712..>1608
                     /locus_tag="VLM17_06015"
     CDS             712..>1608
                     /locus_tag="VLM17_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014504592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HSR65144.1"
                     /translation="MPLFRYKALNTRGELLDGQMEAASDAEVVARLQEQGNLPIEARL
                     ASEAGGESAWRVLFKPKPFAGQRLVQFTQQLATLLGAGQPLDRALTILLELPEDEAAK
                     RTIADLRDSVRGGTALSTALERQHGTFSKLYVNMIRAGEAGGSLHDTLARLADYLERS
                     RAMRGRVVNAMIYPAILLVMVGLSLLFLLGFVVPQFAAMYDSLDAQLPWFSRIVLGVG
                     MFVRDWWIVLLVVPAAVAWWFDRKRRDPVFRAAFDAWLLRQKFAGPLVARIETARLAR
                     TLGTLLRNGVPLLTALGIGRNVL"
BASE COUNT          245 a          569 c          555 g          239 t
ORIGIN      
        1 gaccaccacg ctgtacgcgg cgctgaaccg gctgaacacg ccggacgtca agatcatcac
       61 ggtcgaggac ccggtcgaat accagatcga gggcatcaac cagatccagg ccaagccgca
      121 gatcgggctc gactttgcga acgcgctgcg ctcgagcgtg cgtcaggacc ccgacatcat
      181 catgatcggc gaaatgcgcg acctggaaac ctcgcgcatc gccatccagt ccgcgctcac
      241 cggccacctg gtgctgtcca cgctgcacac caacaacgcc gccggcggca tcacccgcat
      301 gctcgacatg ggcgtcgagg actacctgct gacgtcgacc gtcaacggca tcctcgccca
      361 gcgcctggtg cggcggctgg aaccgacgca tgccgagcgc taccgcgcct cgccggagga
      421 gatcgagaag ttcggcctgc gcaggtacca gcccgagggc gaggtgttcc tgtaccgtcc
      481 gcgcggttcc gcgctcgcgc cgaccggcta cctcggccgc accaccatcg tcgaattcct
      541 ggtgatggac gacgagctgc gccgcgcggt gatgcgccac gccggcatgg gcgaactgga
      601 gtcgctcgcc cgcaaggccg gcatgcgcac gatgtacgag gacggcatcg ccaaggcgct
      661 ggccggcgtc acgaccatcg aggaagtgct gcgcgtcacc gaggacgcct gatgccgctg
      721 ttccgctaca aggccctcaa tacccgcggc gagctgctcg atggccagat ggaggccgcg
      781 agcgacgccg aggtggtcgc gcggctgcag gagcagggca acctgccgat cgaggcgcgg
      841 ctggcgagcg aggcgggcgg cgaatcggcc tggcgggtgc tgttcaagcc gaagcccttc
      901 gccggccagc ggctggtgca gttcacccag cagctggcca cgctgctcgg cgcgggacag
      961 ccgctcgacc gcgccttgac catcctgctc gaactgcccg aggacgaggc ggccaagcgc
     1021 acgatcgccg acctgcgcga ttcggtgcgt ggcggcaccg cgctctcgac cgcgctcgag
     1081 cgccagcacg gcaccttctc caagctctac gtcaacatga tccgcgcggg cgaggcgggc
     1141 ggcagcctgc acgacacgct ggcgcgcctg gcggactacc tcgagcgcag ccgggcgatg
     1201 cgcgggcgcg tggtcaacgc gatgatctac cccgcgatcc tgctggtgat ggtcggcctg
     1261 tcgctgctgt tcctgctcgg cttcgtggtg ccgcagttcg cggcgatgta cgacagcctc
     1321 gacgcccagc tgccgtggtt ctcgcggatc gtgctcgggg tgggcatgtt cgtgcgcgac
     1381 tggtggatcg tgctgctggt ggtcccggcc gcggtcgcct ggtggttcga ccgcaagcgg
     1441 cgcgatccgg tgttccgcgc cgccttcgac gcctggctgc tccggcagaa gttcgccggt
     1501 ccgctggtgg cgcgcatcga gaccgcgcgc ctggcgcgca cgctcggcac gctgctgagg
     1561 aacggcgtgc cgctgctgac cgcgctcggc atcggccgca acgtgctc
//
LOCUS       DATIQC010000284         1958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_371957, whole genome shotgun sequence.
ACCESSION   DATIQC010000284 DATIQC010000000
VERSION     DATIQC010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371957"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VLM17_06020"
     CDS             complement(<1..488)
                     /locus_tag="VLM17_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSR65145.1"
                     /translation="MKRLTLPLVLATALLAGAPAAFAQSATAATATTQGTPSQLVLDN
                     SQRILATLEKRRPEFTKNRAALEQFVSGEFTTMFDRDYAARQVLGRHGRGAADAYVKV
                     FADALADSLMRRYGSSLLDFNTRLRVRVKSETALPRGLGVKVATEMLRQGGEPIPVDY
                     LMR"
     gene            complement(548..1003)
                     /gene="mlaD"
                     /locus_tag="VLM17_06025"
                     /pseudo
     CDS             complement(548..1003)
                     /gene="mlaD"
                     /locus_tag="VLM17_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008575276.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
     gene            complement(1103..1852)
                     /locus_tag="VLM17_06030"
     CDS             complement(1103..1852)
                     /locus_tag="VLM17_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003466288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HSR65146.1"
                     /translation="MPFAAATRSLGRAGLFSLSVLRASAPTRDFLAELTREIYKIGAR
                     TLPIIAVGGAFVGLVLTLQGYRTLEKFGASNSLSTLLGLSLYRELGPVLTALLFIGRA
                     GSSIAAELGLMRATDQITALGLMAIDPVKKAVAPRFWAAVLTVPLLTAFFCSFAIAAS
                     YLEAVHVIGLDPGYFWSALKDNVDFVDDYCVAFVKSAIFGGTAALVAAYVGYHAEPTI
                     EGTSVATTRAVVNASLLMLMFNFVLSAFLFQ"
BASE COUNT          308 a          643 c          735 g          272 t
ORIGIN      
        1 cgcatcaggt agtcgaccgg gatcggctcg ccaccctggc gcagcatttc ggtggcgacc
       61 ttgaccccga gcccgcgcgg cagcgccgtc tccgacttca cccgcacgcg cagccgggtg
      121 ttgaagtcga gcagcgagga accgtagcgg cgcatcaggc tgtcggcgag cgcgtcggcg
      181 aacaccttca cgtacgcatc ggcggcgccg cggccgtggc ggccgagcac ctggcgcgcg
      241 gcgtagtcgc ggtcgaacat ggtggtgaat tcgccggaca cgaactgctc gagcgcggcg
      301 cggttcttcg tgaactccgg ccggcgcttc tcgagcgtgg cgaggatgcg ctggctgttg
      361 tcgagcacca gctggctggg cgtgccctgg gtggtcgcgg tggcggcggt ggccgattgc
      421 gcgaatgccg ccggcgcgcc ggcgagcagg gcggtggcga ggacgagggg gagcgtcagg
      481 cgcttcatgg cgtcgtggaa tcctgggacg tcgggggagt ggcggcattg tccgatgcgg
      541 caggcttgcc gccgctgaac atgtatttgc cgaccatctg catcaggtcc accgccgggg
      601 tggtgaaggc gatctcctcg cccggcttca ggttggtggt gtcgccgccc ggctgcaggc
      661 cgatgtagct gtcgccgagc aggccgccgg tgaggatgct ggccgaggtg tccgccggca
      721 gctccttgta gcggctgtcg atggcgagcg tgaccaccgc gtcgagcttg accgggtcga
      781 gggtgatcgc gtcgacgttg ccgatgctca cgccgccgat cttcaccggc gcgccctggc
      841 gcagctggcc gaggttggtg aagcgcgcct tcagcgggta ggtggcgtgg ccgaagcccc
      901 acttgccgtt ggtggaggcg atcgccagca ccagcaggct cgccagcgcg agcagcagga
      961 aggtaccgac ggcgaattcg agacggggac cgcgtagcga catggaacgc acctcagtgg
     1021 cgtagtggcg tagcccgggt aagcgcagcg cacccgggat cgtctcccgg gtgcggcctg
     1081 cggcctgacc cgggctacgg gatcattgga aaaggaacgc cgacagcacg aagttgaaca
     1141 tcagcatcag cagcgaggcg ttgaccaccg cgcgcgtggt cgccaccgac gtgccttcga
     1201 tggtcggctc ggcgtggtag ccgacgtagg cggcgaccag cgcggcggtg ccgccgaaga
     1261 tcgccgactt cacgaacgcc acgcagtagt cgtcgacaaa gtccacgttg tccttcagcg
     1321 ccgaccagaa gtagcccgga tccaggccga tcacgtgcac ggcctcgagg tagctcgccg
     1381 cgatcgcgaa gctgcagaag aacgcggtca gcagcggcac ggtcagcacc gccgcccaga
     1441 agcgcggcgc caccgccttc ttcaccgggt cgatcgccat cagcccgagc gcggtgatct
     1501 ggtcggtggc gcgcatcagg ccgagctcgg cggcgatcga cgagccggcg cggccgatga
     1561 acagcagcgc cgtcagcacc ggccccagct cgcggtacag cgacaggccg agcagggtcg
     1621 acagcgagtt cgacgcgccg aacttctcca gcgtgcggta gccctgcagg gtcagcacca
     1681 ggccgacgaa ggcgccgccg accgcgatga tcggcagcgt gcgcgcgccg atcttgtaga
     1741 tctcgcgggt gagttcggcg aggaagtcgc gcgtcggcgc ggaggcgcgc agcaccgaca
     1801 gcgagaacag cccggcgcgg ccgagcgagc gggtggcggc ggcgaagggc atcaggccgc
     1861 ctccgcgcgc gcggcgccgt cgaacgcgcc gccgtcgaag gcgccgctgt cgaaggcgat
     1921 ggggccatcc ggctcgccgc gcaggaactg ccgcacca
//
LOCUS       DATIQC010000285         7150 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_124770, whole genome shotgun sequence.
ACCESSION   DATIQC010000285 DATIQC010000000
VERSION     DATIQC010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7150
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124770"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..733
                     /locus_tag="VLM17_06035"
     CDS             2..733
                     /locus_tag="VLM17_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017114765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HSR65147.1"
                     /translation="MARLRACRIAVVGLGGVGSWAVEAFARSGVGAMTLIDADDLCLS
                     NTNRQLPALLGQYGHGKAAAMAGRCLAINPEIVVEPVPAFLTPSNLEELLGCGYDLVL
                     DACDSFRAKLEAIAWCRRRKQPILTVGSAGGRADPTQVRVRDLSRTEHDAMLSLIRKK
                     LRGDFGFPRNPDRYFGVPAVYSLENVRYPQADGSVCGIRPQADGDAALRLDCGTGLGA
                     ATHVTGAFAFAAAGRALEMLLKGRS"
     gene            855..1859
                     /locus_tag="VLM17_06040"
     CDS             855..1859
                     /locus_tag="VLM17_06040"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSR65148.1"
                     /translation="MHASPSGNEPDSAARPVAGAPAPAARSTEFGQRALRAIPDGVVI
                     VDLDGRVNFLNPIAAHLTGWSEAQSLGRWFSEVVRFTDAQGNVLDLHEVNASGDNITA
                     LVRRDGHVILVDGAMAPIEEDRRQVGWVVTFRNVTAAKRLTSELMYHANHDALTGLVN
                     RRSFESRLERAIATAGGQGCQHALLYFDLDRFKAVNDRGGHVAGDELLRQLAALLRKQ
                     LRERDTLARLGGDEFAVLLEDCRPGDAAHVAEKLRTAVAGFEFVWEGERFRVGASIGQ
                     LDFADGRHSPDALLARADALCYRAKALGRNRVVVGNAAEAPSPAHPARPAAAMGQRLP
                     "
     gene            complement(1856..2194)
                     /locus_tag="VLM17_06045"
     CDS             complement(1856..2194)
                     /locus_tag="VLM17_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005416740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HSR65149.1"
                     /translation="MPYTADYASAPPARADIDADTGLLVLEFGAPWCGHCQLAQAAIA
                     EVLGAAAEVRHLKIEDGRGRPLGRSFRVKLWPTLLFLRDGEEQARLVRPREAREVAHA
                     LGALLPPGSS"
     gene            complement(2318..2671)
                     /gene="ssrA"
                     /locus_tag="VLM17_06050"
     tmRNA           complement(2318..2671)
                     /gene="ssrA"
                     /locus_tag="VLM17_06050"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            2813..4951
                     /locus_tag="VLM17_06055"
     CDS             2813..4951
                     /locus_tag="VLM17_06055"
                     /inference="COORDINATES: protein motif:HMM:NF015859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE domain-containing protein"
                     /protein_id="HSR65150.1"
                     /translation="MPRTSLFGYLLAGVVLLAAVVAVQMYVHRAERRELDAAEAVFAS
                     TADETTALLRQRLDNYELVNRGGVSLFASVARPSRRQWEDYVAGLNLPQRFPALLGLG
                     FAVYVSPGQLSDLQQMMRSAGEGMFPVYPHGPREHYGAVLYLEPRTAENAVAVGFDMY
                     AEPVRHAAMQAAMDTGEARVSGMVQLVQDRGAPTRSVLIYLPVYRAGDRPGSIAARRE
                     AMQGWIYAPFRMADFVRAALHSTRRRAHLRIVDITDREEQVLYADPVQPEIAAFTRSM
                     LLDAYGRRWRLDYESEPQSALESRMASLRTARVVGLIAASLLFVVILALTRTRVRAER
                     LAARMSESYRRSELRFRAAMQYSAIGKALLDHRGHIVEVNPSLARILGASRERLVGTP
                     FGSHFVDDDDPIRTREMAAMPDGVLRTTRSLRRTDGDVRQAQLTFAPVPGEIGQDITR
                     LVQVEDVTDRVRAEAQVLALNRSLEARVATRTHELTMANRELERFAYSVSHDLRAPLR
                     AIDGFSRLLGDRYTAQLGEEGREYVARVRSAAARMGELIDSMLKMARLSRGDLRLREL
                     DLSRMAADAVAELRASEPQRKVHVEIQPGLTAVGDSGLARSLLQNLLGNAWKFTRERE
                     EGEVVFGRTPQGEFFVRDNGAGFDPGYADKLFRPFQRLHSQAEFAGHGIGLASVKRIV
                     ERHGGGIRAEGTPGAGATFYFTLPERAPEA"
     gene            complement(4973..5470)
                     /gene="smpB"
                     /locus_tag="VLM17_06060"
     CDS             complement(4973..5470)
                     /gene="smpB"
                     /locus_tag="VLM17_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011050971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HSR65151.1"
                     /translation="MGKKQSGKDKANGGGTIALNKRARHDYHLEQRYEAGLALQGWEL
                     KAIRAGRANIGESYAVIRDGELYLFGAQVTPLISASTHVVADAHRTRKLLLHKHEIDT
                     LIGRVQRDGYTLVPTALYWKGNKVKAEVALAKGKQSHDKREASKERDWSREKQRLLRR
                     HNKDA"
     gene            5522..5953
                     /locus_tag="VLM17_06065"
     CDS             5522..5953
                     /locus_tag="VLM17_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HSR65152.1"
                     /translation="MPKIQRSALVEHSASRMFALVNDVAAYPRRFGWCEGAQVLEADE
                     RRVVARLDLGLGGFRTWFTTENTLSPPHHIDMQLRDGPFKRMAGRWQFHALDESACKV
                     SLTLDFEPQNRLLLPALTLGFQGLADRMVNDFVRVADGEAA"
     gene            5956..6228
                     /locus_tag="VLM17_06070"
     CDS             5956..6228
                     /locus_tag="VLM17_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HSR65153.1"
                     /translation="MANPIRVEVVLAWPRRHEVRVLALPAGACVGDALAASGLASEGI
                     VGYAVFGERVDPATALRDGDRLELLRALQADPKDARRRRAATQRAK"
     gene            complement(6275..6658)
                     /gene="bamE"
                     /locus_tag="VLM17_06075"
     CDS             complement(6275..6658)
                     /gene="bamE"
                     /locus_tag="VLM17_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006449455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HSR65154.1"
                     /translation="MRKFLLVASLAAATAGCGILYKQPIYQGNLIEKTAADQLQAGMS
                     KQQVETLLGTPSIQDPFHHDRWDYLASERTSRIGHTDVKDLTLWFENDALVKWDGSYF
                     PEQDEELSRRMARFGNLPKDKKKRR"
     gene            6751..>7150
                     /gene="fur"
                     /locus_tag="VLM17_06080"
     CDS             6751..>7150
                     /gene="fur"
                     /locus_tag="VLM17_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HSR65155.1"
                     /translation="MENLDLRKAGLKVTHPRMRILGLLEQVKPRHMTAEDIYRHLVEQ
                     GEEIGLATVYRVLTQFETAGLVLKHNFEGGHAVYELDRGEHHDHMVDIDTGKVIEFQS
                     DEIEELQRRIAAKHGYQIEEHALVLYVRKKR"
BASE COUNT         1006 a         2525 c         2557 g         1062 t
ORIGIN      
        1 gctggcgcgt ctgcgtgcgt gccggatcgc cgtggtcggg ctcggcggcg tcggctcgtg
       61 ggcggtcgag gcattcgctc gcagcggcgt cggcgcgatg acgctgatcg atgccgacga
      121 cctctgcctg tccaacacca accgccagct gcccgcgctg ctcggccagt acgggcacgg
      181 caaggcggcg gcgatggccg ggcggtgcct cgcgatcaac ccggagatcg tggtcgaacc
      241 ggtgccggcc ttcctcacgc cgtccaacct cgaggaactg ctcggttgcg gctacgacct
      301 cgtgctcgac gcctgcgaca gcttccgcgc caagctcgag gcgatcgcgt ggtgccggcg
      361 gcgcaagcag ccgatcctca ccgtcggctc ggccggcggc cgcgccgacc cgacccaggt
      421 gcgcgtgcgc gacctctcgc gcaccgagca cgacgcgatg ctgtcgctga tccgcaagaa
      481 gctgcgcggc gacttcggct tcccccgcaa tcccgaccgc tatttcggcg tgccggcggt
      541 gtactcgctg gagaacgtgc gctacccgca ggcggacggc agcgtgtgcg ggatccgccc
      601 gcaagccgac ggcgacgcgg cgctgcggct ggactgcggg accggcctgg gcgcggcgac
      661 ccacgtgacc ggggcgttcg ccttcgccgc ggcggggcgc gcgctggaga tgctgctcaa
      721 aggccgctcc tgacgcattg ccgaagccca ggccgtggcc tgaatgcggg attgggacgc
      781 gcgtcacccg cgttgcgcga actccgccca gcatgctcac ctggacttgg cgcgccgggt
      841 cctaccttgt gcggatgcac gcttcacctt ccgggaacga gcctgactcc gcggcacgcc
      901 cggtcgcggg cgctccggcg ccggccgcac gatcgacgga attcggccag cgcgcgctgc
      961 gggcgatccc ggacggcgtg gtgatcgtcg acctcgacgg gcgcgtcaat ttcctcaacc
     1021 ccatcgccgc ccacctgacc ggttggagcg aggcgcaatc gctcggccgc tggttcagcg
     1081 aggtggtgcg cttcaccgac gcgcagggca acgtgctcga cctgcacgaa gtgaacgcga
     1141 gcggcgacaa catcaccgcg ctggtgcggc gcgacggcca cgtcatcctg gtcgacggcg
     1201 cgatggcacc gatcgaggaa gaccggcgcc aggtcggctg ggtggtcacc ttccgcaacg
     1261 tgaccgccgc caagcgcctc accagcgagc tcatgtacca cgccaaccac gacgcgctga
     1321 ccggcctcgt gaaccggcgc agcttcgagt cgcggctgga gcgcgcgatc gccaccgcgg
     1381 gggggcaggg ctgccagcac gcgctgctgt acttcgacct cgaccgcttc aaggccgtca
     1441 acgaccgcgg cggccacgtg gccggcgacg agctgctgcg ccagctcgcc gcgctgctgc
     1501 gcaagcagct gcgcgaacgc gacacgctgg cgcgcctcgg gggcgacgag ttcgccgtcc
     1561 tgctcgagga ttgccggccc ggtgacgcgg cccacgtcgc cgagaagctc cgcaccgccg
     1621 tggccggctt cgagttcgtg tgggaaggcg agcgtttccg cgtcggcgcc agcatcggcc
     1681 agctcgattt cgccgatggc aggcactcgc ccgacgcgct gctcgcgcgt gccgacgcac
     1741 tgtgctatcg cgccaaggca ctggggcgca accgggtggt ggtcggcaac gcggccgagg
     1801 cgccgtcgcc ggcgcacccg gcgcggcctg ccgcggcgat gggccagcgc ctgccctagg
     1861 acgagccggg aggaaggagc gcgccgagcg cgtgcgccac ttcgcgcgct tcgcgcggcc
     1921 gcaccagccg cgcctgctcc tcgccgtcgc gcaggaacaa cagcgtcggc cacagcttca
     1981 cccggaagct gcgcccgagc ggccgcccgc ggccatcctc gatcttgagg tggcgcacct
     2041 ccgccgccgc gcccagcacc tccgcgatcg ccgcttgcgc gagctggcaa tggccgcacc
     2101 agggcgcgcc gaactcgagc acgagcaggc ccgtgtcggc gtcgatgtcg gcgcgggcgg
     2161 gtggagcgct ggcgtagtcg gcggtgtagg gcatggcaag cgttcccacg ggcgtcgcag
     2221 gatgctgccg cggcgcgggt gagcgcggtg catcgccgca gcgtgccagc gccgctggaa
     2281 acgcggcggg ccgcttgcgc ggcccgtcgg tgggaactgg tggaggtggg gggaatcgaa
     2341 cccccgtccg aaggcactcc atgcccggca ctacatgctt agcccgttgt tcgatctcgg
     2401 atggcggcaa cacaacgtgc gaggcacacc gtcacccaca ccggctttga tcttggcagc
     2461 gactgaccgg tcgccatcgc tgccgatcct gtgatgatga ccctacatcc acgagcacag
     2521 gcacaagtgg gttcggggct aggccttaag cggccagagc gtagacgtcg tcgttggcgt
     2581 ctgagttttt gcagctggat taacgaggaa agctaccccc tcggcatgcg ccagacgatt
     2641 tcgcgacccc cgtcgaagcc agtgcacccc cgggaagcgt cgatgtcgcc gaccacgcca
     2701 gtatagggtg gcgtcccggg gccgcaagcc gccggcggcg cgggtgcagg cacgattcat
     2761 gcggccggcg gctatcctgc gacggatgcg cgccgcccag ccacccctgg ccttgccccg
     2821 cacctcgctg ttcggctacc tgctggccgg cgtggtgctg ctcgcggcgg tggtggcggt
     2881 gcagatgtac gtgcaccgcg cggagcgccg cgagctggat gcggccgaag ccgtgttcgc
     2941 ctccaccgcc gacgagacca ccgcgctgct gcgccagcgc ctggacaact acgagctggt
     3001 gaaccgcggc ggcgtgtcgc tgttcgcctc ggtggcgcgc ccgagcaggc ggcagtggga
     3061 ggactacgtc gccggcctca acctgcccca gcgtttcccg gcgctgctcg gcctcggctt
     3121 cgccgtctac gtctcgccgg ggcagctttc cgacctgcag caaatgatgc gcagcgccgg
     3181 tgaaggcatg ttcccggtgt atccgcacgg tccccgcgag cactacggcg cggtcctgta
     3241 cctggaaccg cggaccgccg agaacgccgt cgcggtcggt ttcgacatgt atgccgagcc
     3301 ggtacgccat gccgcgatgc aggcggcgat ggacaccggc gaggcgcggg tgagcgggat
     3361 ggtgcagctc gtgcaggatc gtggcgcgcc gaccaggtcg gtgctgatct acctgccggt
     3421 gtatcgcgcc ggcgaccggc cgggcagcat cgcggcgcgg cgcgaggcga tgcagggctg
     3481 gatctacgcg cctttccgga tggccgactt cgtcagggca gccctgcatt ccacccgcag
     3541 gcgcgcgcac ctgcgcatcg tcgacatcac cgaccgcgag gaacaggtgc tgtacgccga
     3601 tccggtccag ccggagatcg cggccttcac ccgcagcatg ctgctggacg cgtatggccg
     3661 gcgctggcgg ctggactacg agtccgagcc gcagtccgcg ctggagtcgc gcatggcctc
     3721 cctgcgcacc gcgcgggtgg tcggcctgat cgccgcgtcg ctgctgttcg tggtcatcct
     3781 cgcgctcacc cgcacgcgcg tacgcgccga acgcctggcc gcgcgcatgt ccgaatccta
     3841 ccgccgcagc gaactgcgct tccgcgcggc gatgcagtac tcggcgatcg gcaaggcgct
     3901 gctcgaccat cgcggccaca tcgtcgaggt caacccgtcg ctggcgcgca tcctcggggc
     3961 cagccgcgag cgcctggtgg gcacgccctt cggcagccat ttcgtcgacg acgacgaccc
     4021 gatccgcacc cgcgagatgg cggccatgcc cgatggcgtg ctgcgcacca cccgcagcct
     4081 gcgccgcacc gatggcgacg tgcgccaggc gcagctgacc ttcgcgccgg tgccgggcga
     4141 gatcggccag gacatcaccc ggctggtgca ggtggaggac gtcaccgacc gggtgcgcgc
     4201 cgaggcgcag gtgctggcac tcaaccgctc gctggaggcg cgcgtggcga cgcgcacgca
     4261 cgagctgacg atggccaacc gcgagctcga gcgtttcgcc tacagcgtct cgcacgacct
     4321 gcgcgcgccg ctgcgcgcga tcgacggatt cagccggttg ctcggtgatc gctacacggc
     4381 gcagctcggc gaggaagggc gtgaatacgt cgcgcgcgtg cgcagcgccg cggcgcgcat
     4441 gggcgagttg atcgactcga tgctcaagat ggcgcgcctg agccgcggcg acctgcgcct
     4501 gcgcgaactc gacctctcgc gcatggcggc cgacgcggtc gcggagctgc gcgcgagcga
     4561 accccagcgc aaggtccatg tcgagatcca gcccgggctc acggcggtgg gcgattccgg
     4621 ccttgcgcgc agcctgctgc agaacctgct cggcaatgcc tggaagttca cccgcgagcg
     4681 ggaggagggc gaggtcgttt tcgggcgcac gccgcagggc gagttcttcg tgcgcgacaa
     4741 cggcgccggc ttcgaccccg gctacgcgga caagctgttc cggccgttcc agcgcctgca
     4801 cagccaggcc gagttcgccg ggcacggcat cggcctcgcc tcggtcaagc gcatcgtcga
     4861 acgccatggc ggcggcatcc gcgccgaagg gacgccaggc gcgggcgcga cgttctactt
     4921 cacgctgccc gagcgcgcgc cggaagcgtg agcgcgggcg ccgccccggc gatcaggcgt
     4981 ccttgttgtg ccggcgcagc aggcgctgct tctcgcgcga ccaatcgcgt tccttgctgg
     5041 cctcgcgctt gtcgtgcgac tgcttgccct tcgccagcgc gacctcggcc ttgaccttgt
     5101 tgcccttcca gtacagcgcg gtcggcacca gcgtgtaacc gtcgcgctgc acgcgcccga
     5161 tcagggtgtc gatctcgtgc ttgtgcagca ggagcttgcg cgtgcggtgg gcatcggcga
     5221 cgacgtgggt cgaggccgag atcagggggg tgacctgcgc gccgaacagg tagagctcgc
     5281 cgtcgcggat gaccgcgtag ctctcgccga tgttggcgcg gccggcgcgg atcgccttca
     5341 gctcccagcc ctgcagcgcg aggccggcct cgtagcgctg ctcgaggtgg tagtcgtggc
     5401 gcgcgcgctt gttcagcgcg atggtgccgc cgccgtttgc cttatccttg ccggattgtt
     5461 tcttgcccat tcgcgccatt gtcccggaag cggggccggc gtgcgaggcc gagcccggac
     5521 catgccgaaa atccagcgca gcgcccttgt cgagcactcg gcctcgcgca tgttcgcgct
     5581 ggtgaacgac gtggccgcct atccgcgccg cttcggctgg tgcgagggtg cgcaggtgct
     5641 ggaggcggac gagcgccgcg tggtggcccg gctcgacctc ggcctcggcg gcttccgcac
     5701 ctggttcacc accgagaaca cgctgtcgcc gccgcaccac atcgacatgc agttgcgcga
     5761 cgggccgttc aagcgcatgg ccgggcgctg gcagttccac gccctggacg agtcggcgtg
     5821 caaggtctcg ctgacgctgg acttcgagcc gcagaaccgc ctgctgctgc cggcgctcac
     5881 gctgggcttc cagggcctcg ccgaccgcat ggtcaacgac ttcgtgcgcg tcgccgacgg
     5941 cgaggctgcg tgagcatggc gaacccgatc cgggtcgaag tggtgctggc ctggccgcgc
     6001 cgccacgagg tgcgggtcct ggccctcccc gcgggcgcct gcgtgggcga tgcactggcg
     6061 gcgtcggggc tggcgtccga gggcatcgtc ggctacgcgg tgttcggcga acgcgtcgat
     6121 cccgccacgg ccctgcgcga cggcgaccgc ctcgaactgc tgcgggcgct gcaggccgat
     6181 cccaaggacg cccgccgccg ccgcgccgcc acccagcgcg ccaaatgaaa acgcccggcg
     6241 tggccgggcg ttgcgggcgg gcgtcggcga ggcctcagcg tcgcttcttc ttgtccttgg
     6301 gcaggttgcc gaagcgcgcc atccggcggg agagctcctc gtcctgctcg gggaagtagc
     6361 tgccgtccca cttcaccagc gcgtcgttct cgaaccagag ggtgaggtcc ttcacgtcgg
     6421 tgtggccgat gcggctggtc cgttcgctgg cgaggtagtc ccagcggtcg tggtggaacg
     6481 gatcctggat cgagggcgtg ccgagcagcg tctcgacctg ctgcttgctc atgcccgcct
     6541 gcagctggtc ggcggcggtc ttctcgatca ggttgccctg gtagatcggc tgcttgtaca
     6601 ggatcccgca gccggcggtg gcggcggcga gggaggcaac gagcaggaac ttgcgcatcg
     6661 gaaggctcgg gggcaaaaac gcgccgatga tacactgaag cgcttgccgc ggccctgctg
     6721 cgcgcggcgc acgagggagc ggcgatggcg atggaaaacc tggacctgcg caaggccggc
     6781 ctcaaggtga cccatccgcg catgcgcatc ctgggcctgc tggaacaggt caagccccgg
     6841 cacatgaccg ccgaggacat ctaccgccac ctggtcgagc agggcgagga gatcgggctg
     6901 gcgaccgtgt accgcgtgct gacccagttc gagaccgcgg gcctggtgct gaagcacaac
     6961 ttcgagggcg gccacgccgt ctatgaactg gaccgcggcg agcaccacga ccacatggtc
     7021 gacatcgaca ccggcaaggt gatcgagttc cagagcgacg agatcgagga gctgcagcgg
     7081 cgcatcgccg cgaagcacgg ctaccagatc gaggagcacg cgctggtgct gtacgtgcgc
     7141 aagaagcgct
//
LOCUS       DATIQC010000286         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_124785, whole genome shotgun sequence.
ACCESSION   DATIQC010000286 DATIQC010000000
VERSION     DATIQC010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124785"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..179
                     /locus_tag="VLM17_06085"
     CDS             <1..179
                     /locus_tag="VLM17_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003480243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="putative peptide maturation dehydrogenase"
                     /protein_id="HSR65156.1"
                     /translation="EAGLGAFITGAINEVFLEQAFGLDPVCEGALAVCGFGWRAQDMA
                     TAEFDPAGVVWQEA"
     gene            complement(259..>2075)
                     /locus_tag="VLM17_06090"
     CDS             complement(259..>2075)
                     /locus_tag="VLM17_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HSR65157.1"
                     /translation="MPLAIATDALQAAPLASDTYLSLRQGNARVLERGDTALADSAEA
                     LSAKVPDSDLRIAAGLPDETAGVFGLGAIPSFVAALVLLGLAAFAWRAARRAPGVAGT
                     AAASGEPTLADALLATPAPAAARPAVVADAPAPSAEPAAGSRQVPIDKGIFRAYDIRG
                     VVGKTLDRGVAELIGHAIGSLMFEQGLNDIVVGRDGRLSGPDLIDGLTDGLRKAGRNV
                     IDIGMVPTPVVYFGTYQLRTGCGIAVTGSHNPPDYNGFKVVVGGVTLSGDAITDLYAR
                     IADDRLHTADAPGTHGHRDISEDYVARIASDVQMDRRLKVVVDAGNGVAGALGPRVLE
                     AIGAEVVPLYCEIDGTFPHHHPDPSEPHNLNDLVQMVGRLGADLGIAFDGDGDRLGVV
                     TQAGHNIFPDRLLMLFAADVLERNPGAVIVYDVKCTGRLPSQILRHGGSPLMWKTGHS
                     LIKAKMRETEAELAGEMSGHFFFGERWYGFDDGIYAAARLLEILAAHPESPSEQLDAL
                     PDGVSTPELKVEAPDGNPHAFVERFRKAAKFEGARSSTIDGLRVDWNDGWGLVRASNT
                     TPVLVLRFDADSAQALARIQAAFREQLLALKPDLALPF"
BASE COUNT          272 a          704 c          805 g          294 t
ORIGIN      
        1 ccgaggccgg cctcggcgcg ttcatcaccg gggcgatcaa cgaggtcttc ctcgagcagg
       61 cgttcggcct cgacccggtg tgcgaggggg cgctcgccgt gtgcggcttc ggctggcgcg
      121 cgcaggacat ggcgacggcc gagttcgacc cggccggcgt ggtgtggcag gaggcgtgag
      181 gcaccagcag gtgtcgccgg gcccgaagca agacggccgg catcgagccg gccgtcttgc
      241 ttgcggcaga tggcgcgatc agaacggcaa cgcgaggtcc ggcttcagcg ccagcagctg
      301 ctcgcggaac gcggcctgga tgcgcgccag cgcctgcgcc gagtcggcat cgaagcgcag
      361 caccagcacc ggggtggtgt tggacgcgcg caccaggccc cagccgtcgt tccagtccac
      421 gcgcaggccg tcgatggtcg agctgcgcgc gccctcgaac ttcgccgcct tgcggaagcg
      481 ctcgacgaag gcgtgcgggt tgccgtcggg cgcctcgacc ttgagctcgg gcgtggacac
      541 gccatcgggc agcgcgtcga gctgttcgct gggcgattcc ggatgcgcgg cgaggatctc
      601 gagcaggcgc gcggcggcgt agatgccgtc gtcgaaaccg taccagcgct cgccgaagaa
      661 gaagtggccg ctcatctcgc cggccagctc cgcctcggtc tcgcgcatct tcgccttgat
      721 cagcgaatgc ccggtcttcc acatcagcgg actgccccca tggcgcagga tctggctggg
      781 caggcggccg gtgcacttga cgtcgtacac gatcaccgcg cccgggttgc gctcgagcac
      841 gtcggcggcg aacagcatca gcaggcggtc ggggaagatg ttgtggcctg cctgcgtcac
      901 cacgccgagg cggtcgccgt cgccgtcgaa ggcgatgccg aggtcggcgc ccagccgtcc
      961 gaccatctgc acgaggtcgt tgaggttgtg cggctcgctc ggatcggggt ggtggtgcgg
     1021 gaaggtgcca tcgatctcgc agtacagcgg caccacttcg gcgccgatcg cctccagcac
     1081 ccgcggtccg agcgcgccgg cgacgccgtt gccggcgtcg accaccacct tcaggcggcg
     1141 gtccatctgc acgtcggaag cgatgcgtgc gacgtagtcc tcgctgatgt cgcgatgccc
     1201 gtgcgtgccg ggcgcgtcgg cggtgtgcag gcggtcgtcg gcgatgcgcg cgtagaggtc
     1261 ggtgatggca tcgcccgaca gggtcacgcc gcccaccacg accttgaagc cgttgtagtc
     1321 gggcgggttg tggctgccgg tcacggcgat gccgcagccg gtgcgcagct ggtaggtgcc
     1381 gaagtacacc accggcgtcg gcaccatgcc gatgtcgatg acgttgcggc cggccttgcg
     1441 caggccgtcg gtgaggccgt cgatcaggtc cggcccggac aggcggccgt cgcggccgac
     1501 cacgatgtcg ttgaggccct gctcgaacat caggctgccg atcgcatggc cgatcagttc
     1561 ggccacgccg cggtcgagcg tcttgccgac cacgccgcgg atgtcgtacg cgcggaagat
     1621 gcccttgtcg atcgggacct ggcgcgatcc ggccgcgggt tcggcggacg gcgcgggtgc
     1681 gtcggccacc accgccggcc gcgccgcggc cggcgcgggc gtggccagga gggcgtcggc
     1741 gagggtcggt tcgccgctcg cggcggcggt gccggcgacg cccggcgcgc ggcgcgcggc
     1801 gcgccaggcg aaggcggcga ggccgagcag gaccagcgcg gcgacgaagg aggggatcgc
     1861 gccgaggccg aacacgcccg cggtctcgtc gggcaggccg gccgcgatgc gcaggtcgct
     1921 gtcgggcacc ttcgccgaga gggcctcggc gctgtcggcg agcgcggtgt cgccgcgctc
     1981 gagcacgcgg gcattgccct ggcgcagcga gaggtaggtg tcgctggcca ggggcgcggc
     2041 ctgcagcgcg tcggtggcga tcgccagcgg catgc
//
LOCUS       DATIQC010000287         2131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_336975, whole genome shotgun sequence.
ACCESSION   DATIQC010000287 DATIQC010000000
VERSION     DATIQC010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336975"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VLM17_06095"
     CDS             complement(<1..378)
                     /locus_tag="VLM17_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR65158.1"
                     /translation="MNAAGSAASGAAAYRAQSNADAARIVERHAELVRRIAHHLAARL
                     PSSVEVDDLIQAGMLGLIEAARNFQADQGASFETYASIRIRGAMIDEIRRGDWVPRSV
                     HRRYRDVVAATRQVEQKAGRAATS"
     gene            complement(375..1238)
                     /locus_tag="VLM17_06100"
     CDS             complement(375..1238)
                     /locus_tag="VLM17_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MinD/ParA family protein"
                     /protein_id="HSR65159.1"
                     /translation="MPSPDFPRDASPRNNAPRVIAVASGKGGVGKTSVSVNLALSLAN
                     AGQRTLLLDTDLGLANVDVMLGLSPRFTLADVIAGRCELADTVLEGPGGLWVVPAASG
                     KRHMAELTPQEHVGLVHAFSQLDLPIETMVVDTAAGIADGVLTFCQAAQDVVVVVCDE
                     PASVTDAYALIKVLSSERGVNRVQVLANQVMHPAEGRQLFDKLERVTARFLDVTLSYL
                     GAIPRDEWLRRAVQRQEAVVEAFPSSPSALAFREIARRAAQWQAPVGSRGGVEFFLER
                     LVQAPARSAAA"
     gene            complement(1225..>2131)
                     /locus_tag="VLM17_06105"
     CDS             complement(1225..>2131)
                     /locus_tag="VLM17_06105"
                     /inference="COORDINATES: protein motif:HMM:NF012662.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR65160.1"
                     /translation="DPALAAMRAELAAMRAMMEKQMGELAVERLRGSPARAAVFDALL
                     GYGCDDAFAQTLATRIDARMEPAEARAAMLDEFARMISVQRAEPIDDGGVIALVGPTG
                     AGKTTTAAKLAARFAARHGARDVALVTTDTERPGASEQLHTLGRKLGVTVCQADGPEG
                     INAALAQLADYPLVLVDTAGYAMRDRALLGQILWLRTARRVRSLLVLPANANPQDLAE
                     VARRYRPASPEGVVLTKTDETGRLGAALSLLARQNLSLAYTTCGQQVPGDLDAADPAR
                     LVQSLERLRRAADNPLATEDRHAVA"
BASE COUNT          271 a          733 c          839 g          288 t
ORIGIN      
        1 gctggtcgcc gcgcggccgg ccttctgctc gacctggcgg gtggccgcga ccacgtcgcg
       61 gtagcgccgg tgcaccgagc gcggcaccca gtcgccgcgg cggatctcgt cgatcatcgc
      121 gccgcggatg cggatcgagg cataggtctc gaacgacgcg ccctggtcgg cctggaaatt
      181 gcgcgcggcc tcgatcaggc cgagcatgcc ggcctggatc aggtcgtcga cttccacgct
      241 ggacggcagg cgcgcggcga ggtggtgggc gatgcgccgc accagttcgg cgtgccgttc
      301 cacgatccgc gcggcatcgg cgttggactg cgcgcggtag gcggcggccc cggacgctgc
      361 agagccggcg gcgttcatgc ggcggcgctc ctggccggcg cctgcaccag ccgttcgagg
      421 aagaattcga cgccgccgcg cgaaccgacg ggcgcctgcc actgcgcggc gcggcgtgcg
      481 atctcgcgga aggcgagcgc cgacgggctg gacgggaacg cctcgaccac cgcctcctgg
      541 cgctgcaccg cgcggcgcag ccattcgtcg cgcgggatcg cgccgaggta ggacagggtg
      601 acgtcgagga aacgcgcggt gacgcgctcg agcttgtcga acagctggcg gccctcggcc
      661 ggatgcatca cctggttggc gagcacctgc acccggttga cgccgcgctc gctgctcagg
      721 accttgatca gcgcgtaggc atcggtgacc gaggccggtt cgtcgcacac cacgacgacc
      781 acgtcctgcg cggcctggca gaaggtcagc acgccgtcgg cgatgccggc ggcggtgtcg
      841 accaccatcg tctcgatcgg caggtcgagc tgcgagaacg catgcacgag gccgacgtgt
      901 tcctgcggcg tcagctcggc catgtggcgc ttgccggacg cggccggcac cacccacagc
      961 ccgccggggc cttcgagcac ggtgtcggcg agctcgcagc ggccggcgat cacgtcggcg
     1021 agggtgaagc gcggcgacag gccgagcatc acgtcgacgt tggcgaggcc gaggtcggtg
     1081 tcgagcagca gggtgcgctg gccggcgttg gccagcgaca gcgcgaggtt gaccgacacc
     1141 gaggtcttgc cgacgccgcc cttgccgctg gcgacggcga tgacgcgcgg agcgttgttg
     1201 cggggagacg catcgcgcgg gaagtcaggc gacggcatgg cggtcctcgg tggcaagggg
     1261 gttgtcggcg gcgcggcgca gccgttcgag cgactgcacc aggcgcgcgg gatcggcggc
     1321 atcgaggtcg cccggcacct gctggccgca ggtggtgtag gcgaggctga ggttctgccg
     1381 ggccagcagc gagagcgcgg cgcccaggcg cccggtctcg tcggtcttgg tcagcaccac
     1441 gccttccggc gacgccggcc ggtagcggcg cgcgacctcg gcgaggtcct gcgggttggc
     1501 attggccggc agcaccagca ggctgcgcac gcggcgcgcg gtgcgcagcc acaggatctg
     1561 gccgagcagg gcgcggtcgc gcatcgcgta gccggcggtg tcgaccagca ccagcgggta
     1621 gtcggccagc tgtgcgagcg cggcgttgat gccttccggg ccgtcggcct ggcagacggt
     1681 gacgccgagc ttgcggccga gcgtgtgcag ctgctcgctg gcgcccgggc gttcggtgtc
     1741 ggtggtgacc agggcgacgt cgcgcgcgcc gtggcgggcg gcgaagcgcg cggcgagctt
     1801 ggcggcggtg gtggtcttgc cggcgccggt cgggccgacc agcgcgatca cgccgccgtc
     1861 gtcgatgggc tcggcgcgct gcacgctgat catccgcgcg aactcgtcga gcatcgccgc
     1921 gcgcgcctcc gccggttcca tgcgcgcgtc gatgcgggtg gcgagcgtct gcgcgaaggc
     1981 atcgtcgcag ccgtagccga gcagcgcgtc gaacaccgcg gcgcgcgcgg gcgagccgcg
     2041 caggcgctcg accgcgagtt cgcccatctg cttttccatc atcgcgcgca tcgcggccag
     2101 ctcggcgcgc atcgcggcga gggccggatc c
//
LOCUS       DATIQC010000288         2345 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_655354, whole genome shotgun sequence.
ACCESSION   DATIQC010000288 DATIQC010000000
VERSION     DATIQC010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_655354"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1091
                     /gene="sufD"
                     /locus_tag="VLM17_06110"
     CDS             <1..1091
                     /gene="sufD"
                     /locus_tag="VLM17_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HSR65161.1"
                     /translation="AIDAALLAHVPAPRLVFVNGHFDAALSDRSGLPAGIELSPLSSM
                     SAGDSADATWPAGRFERADEIFARLNTALAREGVVVRVAEDAGSDAPVHLVFAGAPTG
                     ADQAWHARHLIELQRGARLTVVEHHLAAGDHAHLGNALLRVCLAQGARLLHVRVQDEA
                     ARASLLARTDAELGRDAHYQRLDLELGAGLSRHELNVRLQGDGARVAANGVLLGTGRR
                     HVDTRLGIEHLARDTACDLLWRGLGAGRSRVVFHGGITIHPGADGSDAALANKNLLLS
                     DQAEVDSQPVLEIHADEVKAAHGATVGQLDPVAMFYLRSRGLPEAQARRLLTAAFARE
                     AVMGIGEPALREALLQVLDAALARLEAA"
     gene            1088..2332
                     /locus_tag="VLM17_06115"
     CDS             1088..2332
                     /locus_tag="VLM17_06115"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011051933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HSR65162.1"
                     /translation="MSTAPRATPDRIDWARVRADFPLLAREVHGKPLVYFDSANTGQK
                     PAAVIDAVDDFYRRHNANVSRAVHALGTEATDAYEAARRHLARHLGVRADELVLTSGT
                     TFAINLVAYSWALPRLGPGDAILLTRMEHHANIVPWQLVAERTGARIKVAEITPDGVL
                     DLDALHAAMTPEVRLLGVTHVSNVLGTINPVAAICREARRRGIVTVVDGSQALPHLAV
                     DVPPIGCDFYAFTGHTMCGPTGTGGLWARRELLASMPPFLGGGEMIKEVRFEGTVFND
                     PPHRFEAGTPNIAGHIGLGVATDYLDGLGMANITAREGELLAHLTEEMRQVDGLRILG
                     TAPDKAAVVSFLVEGAHAHDLATLLDLEGVAIRSGHHCAHPLMQHFGVPATCRASLAF
                     YNTHDEVDAFVAALGKVRKLLG"
BASE COUNT          327 a          901 c          795 g          322 t
ORIGIN      
        1 tggcgatcga tgccgcgctg ctcgcccacg ttcccgcgcc gaggctggtg ttcgtcaatg
       61 gccatttcga cgccgccctg tccgaccgca gcggactgcc ggcgggcatc gaactgtcgc
      121 cgctgtcctc gatgtccgcc ggcgacagtg cggacgccac gtggcctgcc ggccgcttcg
      181 aacgcgccga cgagatcttc gcccgcctca acaccgcgct cgcccgcgaa ggcgtggtgg
      241 tgagggtggc ggaagatgcc gggtccgatg cgccggtgca tctcgtcttc gccggcgccc
      301 ccaccggcgc cgaccaggcg tggcatgccc gccacctcat cgaactgcaa cgcggcgcgc
      361 ggctcaccgt cgtcgagcac cacctcgccg cgggcgacca cgcgcacctc ggcaacgcac
      421 tgctgcgggt gtgcctcgcc cagggcgcga ggctgctgca cgtgcgcgtg caggacgagg
      481 ccgcccgcgc gtcgcttctc gcgcgcaccg acgccgaact gggtcgcgac gcgcattacc
      541 agcgcctcga cctcgaactc ggcgccggcc tctcgcgaca cgagctcaac gtccgcctgc
      601 agggcgacgg cgcgcgcgtc gccgcgaacg gcgtgctgct cggcaccggc cggcgccatg
      661 tcgacacgcg cctcggtatc gagcacctcg cccgcgacac cgcctgcgac ctgctctggc
      721 gcggcctggg cgcgggccga agccgggtgg tcttccacgg cgggatcacg atccaccccg
      781 gcgccgacgg cagcgacgcg gcgctggcca acaagaacct gctgctgtcc gaccaggccg
      841 aggtcgacag ccagccggtc ctcgagatcc acgccgacga ggtcaaggcc gcgcacggcg
      901 ccaccgtcgg ccagctcgat ccggtcgcga tgttctacct gcgctcgcgc ggcctgccgg
      961 aagcgcaggc gcgccggctg ctgaccgcgg cgttcgcgcg cgaggcggtg atggggatcg
     1021 gcgaaccggc cctgcgcgag gcgctgctgc aggtgctcga cgctgccctc gcccggctgg
     1081 aggcggcatg agcacggccc cgcgggcgac gccggaccgc atcgactggg cgcgcgtgcg
     1141 cgccgatttc ccgctgctcg cgcgcgaggt gcacggcaag ccgctggtct atttcgactc
     1201 cgccaacacc gggcagaagc cggccgcggt gatcgacgcg gtcgacgact tctaccgccg
     1261 ccacaacgcc aatgtcagcc gcgccgtgca tgcgctcggc accgaggcca ccgacgccta
     1321 cgaagccgcg cgccggcacc tggcgcggca cctcggcgtg cgcgccgacg aactggtgct
     1381 caccagcggc accacgttcg cgatcaacct cgtggcctac tcgtgggcgc tgcctcggct
     1441 cgggccgggc gatgcgatcc tgctcacgcg catggagcac cacgccaaca tcgtgccgtg
     1501 gcagctggtc gcggagcgca ccggggcgag gatcaaggtc gcggagatca cccccgacgg
     1561 cgtgctcgac ctcgacgcgc tgcacgcggc gatgacgccg gaggtgaggc tgctcggcgt
     1621 cacccacgtg tccaacgtgc tcggcacgat caatccggtc gccgcgatct gccgcgaggc
     1681 gcgccggcgc gggatcgtca ccgtggtcga cggctcgcag gcgctgccgc acctcgcggt
     1741 ggacgtaccc ccgatcggct gcgacttcta cgccttcacc ggccacacga tgtgcgggcc
     1801 gaccggcacc ggcgggctgt gggcgcggcg cgaactgctc gcctcgatgc cacccttcct
     1861 cggcggcggc gagatgatca aggaagtgcg cttcgagggc acggtgttca acgatccgcc
     1921 gcaccgcttc gaagcgggca cgcccaacat cgccggccac atcggcctgg gcgtcgcgac
     1981 ggactacctc gacggcctcg gcatggccaa catcaccgcg cgcgagggcg aactgctcgc
     2041 ccacctgacc gaggaaatgc gccaggtcga tggcctgcgc atcctcggca ccgcgccgga
     2101 caaggccgcg gtggtgtcct tcctcgtcga aggcgcccat gcccacgacc tggccaccct
     2161 gctcgacctc gaaggcgttg cgatccgctc cggccaccac tgcgcccatc cgctgatgca
     2221 gcacttcggc gttccggcga cctgccgggc atcgctcgcg ttctacaaca cccacgacga
     2281 ggtcgatgcc ttcgtcgcgg cgcttgggaa ggttcgcaag ctcctcggct gagctgttcc
     2341 catct
//
LOCUS       DATIQC010000289         6103 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_478731, whole genome shotgun sequence.
ACCESSION   DATIQC010000289 DATIQC010000000
VERSION     DATIQC010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6103
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478731"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..582)
                     /gene="mutL"
                     /locus_tag="VLM17_06120"
     CDS             complement(<1..582)
                     /gene="mutL"
                     /locus_tag="VLM17_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HSR65163.1"
                     /translation="MPIRQLPDTLIDQIAAGEVVERPASVVKELVENALDAGARRVDI
                     DLEEGGVRLIRIRDDGGGIPAEELPLAIARHATSKIASLDDLEAVATLGFRGEALPSI
                     ASVSRFQLASRHAGSAQGAALAVEGGRIGDVAPRAHPPGTTVEVRDLFYNVPARRKFL
                     RAERTEFGHIDDLVKAIALARGAIEFRLSHNGKP"
     gene            complement(667..2082)
                     /locus_tag="VLM17_06125"
     CDS             complement(667..2082)
                     /locus_tag="VLM17_06125"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSR65164.1"
                     /translation="MRVKGATVQQFLLALALLAGVCWNLAEAAELRGIELRSGATGTR
                     AELRLDRESSYQLISLSAPERLVVDLPGARTDKALRLPTPSGLVRAVRSGQPAPGTLR
                     IVFDLASPVVALKPHFEPGPDGARLVLEWPGDGATPAIASSAGATTAAPQPVTTAPIT
                     IPAPGSTQPAPAQSPAATPTPGDPGIAQAPASPTGPASPSPTPVKTLEDIARRGGMRP
                     LVIAIDAGHGGQDTGALGGDGTREKDVTLAIARELARQVDATPGLKAYLTRDSDYFIP
                     LPQRARKAHAARADIFISVHADSFTSPDARGAGVFVLSTRGASSQRARWLADKENAAD
                     VIGGDRARSGDSVLTSVLLDLTQSGNMKVSEDAAGSVLGNLDAIGNLHKGEVERANFA
                     VLRTSDNMPAMLVETGFISNPDEERRLRAPQYQAQLARAILDGVTGYFTRQPPPGTLY
                     AARAEAASAGTGGTGASGGSR"
     gene            complement(2129..2662)
                     /gene="tsaE"
                     /locus_tag="VLM17_06130"
     CDS             complement(2129..2662)
                     /gene="tsaE"
                     /locus_tag="VLM17_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HSR65165.1"
                     /translation="MTTLHLADPSATEAFGHLLAQAQPARAVVHLHGDLGAGKSSLAR
                     AWLRALGVTGAIRSPTYTLVEHYPYADARLPEGGKALHLDLYRIGDAGELEFLALDDA
                     AATLWLVEWPERGGPALPQADLRIDLAVAPAGGRTADLVAGTAAGRDWLAGMTETPAY
                     RALLTSAGRNIRQVSDP"
     gene            complement(2659..4122)
                     /locus_tag="VLM17_06135"
     CDS             complement(2659..4122)
                     /locus_tag="VLM17_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HSR65166.1"
                     /translation="MEPLYDTASLRALEQRASAVAGDDFALMQRAGAAAWRLLLARWP
                     QAQRLVVACGPGNNGGDGYLLAAHAGRSGRTVQVRQVGAPRTDTARRALAECNAAGCA
                     IAAFDGGMPRGDLLVDALFGIGLARAPEGEAAVAIEAMRAFDGPVFALDVPSGADADS
                     GRVPGHAVRATLTLQMLGAHRGLATGDALDHVGECRVATLDVAAGTVQPAASALHAGD
                     LARWLQPRPRNSHKGLYGHVLCIGGDHGSGGAILACAEAALRCGAGLVSVASRAEHVA
                     PLLARRPEAMPHVVDDAHTLAPLLRRASVVAIGPGLGQGKWGRAMLAAALAAGKPLVL
                     DADALNLLADAPRALPADAILTPHPGEAARLLGCDARDVQQDRFAAAATLVERHGCTI
                     VLKGAGTIVAAPQARPRVVTAGNPGMATGGMGDLLTGVAAALRAQGLCAFDAASCAAL
                     LHGAAGDAAARELGERGLLASDLLPALHRLANPDPAA"
     gene            4217..5341
                     /gene="queG"
                     /locus_tag="VLM17_06140"
     CDS             4217..5341
                     /gene="queG"
                     /locus_tag="VLM17_06140"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HSR65167.1"
                     /translation="MQSAPAPAADLGALASRIKALAHEAGFQRCGISGIELGKDEAHL
                     HDWLAQGLYGSMEWMARHGDKRSRPAELIPGTVRVVSVGLDYGRDAGEAWDTLADGGR
                     AYVARYALGRDYHKLMRNRLQQLAGRIADEVGPFGHRVFVDSAPVLERALARNAGLGW
                     IGKHTCLIDRDGGSWFFLGEIYVDLPLPVDPPASAHCGSCMRCIDICPTRAITAPYRL
                     DARRCISYLTIEHEGAIDEELRPLIGNRIFGCDDCQLVCPWNKFAKRTDEPDFRVRND
                     LDKATLAHLFAWSESEFLQRTEGSAIRRSGYQRWLRNIAIALGNAPATPEVLAALASR
                     RDSDDLVVREHVQWALARHAARPGAAGDDRVPVRIAGTER"
     gene            complement(5514..5897)
                     /gene="panD"
                     /locus_tag="VLM17_06145"
     CDS             complement(5514..5897)
                     /gene="panD"
                     /locus_tag="VLM17_06145"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007508045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HSR65168.1"
                     /translation="MQLNILKAKIHRATVTHAELHYEGSCAIDGRLLDISGIREYEQI
                     HIYNVNSGHRFVTYAIRAEEGSGIISVNGAAAHRAAVGDLVIICAYGVCDEAEAAKYK
                     PTLVYVDRDNRLTHTNTSIPAQAAA"
     gene            complement(6007..>6103)
                     /locus_tag="VLM17_06150"
     CDS             complement(6007..>6103)
                     /locus_tag="VLM17_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007806144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HSR65169.1"
                     /translation="PVDGEHGRRVALVAARLGRTRLIDNLEFDAG"
BASE COUNT          797 a         2168 c         2309 g          829 t
ORIGIN      
        1 gggcttgccg ttgtggctga gacggaattc gattgctccg cgcgcaagcg cgatcgcctt
       61 gaccaggtcg tcgatgtggc cgaactcggt acgctcggcg cgcaggaact tgcgccgcgc
      121 cggcacgttg tagaacaggt cgcgcacctc gacggtggtg cccggcggat gcgccctcgg
      181 cgccacgtcg ccgatgcggc cgccctcgac cgcgagcgcc gcgccctgcg cgctgccggc
      241 gtggcgcgag gcgagctgga aacggctgac cgacgcgatc gacggcaacg cctcgccgcg
      301 gaagccgagc gtggccaccg cctcgaggtc gtcgagcgat gcgatcttgc tggtggcgtg
      361 gcgggcgatc gcgaggggca attcctcggc gggaatgccg ccgccgtcgt cgcggatccg
      421 gatcaggcgg acgccgcctt cctcgaggtc gatgtcgacg cggcgcgcgc cggcgtcgag
      481 cgcgttctcg accagttcct tgaccaccga cgcaggccgc tccaccacct cgcccgcggc
      541 gatctggtcg atgagcgtgt cggggagctg gcggatgggc aaggcggcgg cgcgatcgcg
      601 atcgcgtggc gagcggcccg tgatgatagc ggaggcgcgc ggcagcggtg ccggaggatg
      661 tcgcggtcag cggctgccgc cgctcgcgcc cgtgccgccc gtcccggccg atgccgcttc
      721 cgcgcgagcg gcgtagagcg tgccgggcgg cggctggcgg gtgaagtaac cggtcacccc
      781 gtcgaggatg gcgcgcgcga gctgcgcctg gtattgcgga gcgcgcagcc ggcgttcttc
      841 gtcgggattc gagatgaagc cggtttcgac cagcatcgcc ggcatgttgt cggacgtgcg
      901 caggaccgcg aagttggcgc gttcgacctc gcccttgtgc aggttgccga tggcatcgag
      961 gttgccgagc acggaaccgg cagcgtcctc ggacaccttc atgttgccgc tctgggtgag
     1021 gtcgagcagc accgaggtca gcacgctgtc gccgctgcgc gcccgatcgc caccgatcac
     1081 gtcggcggcg ttttccttgt cggccagcca gcgggcgcgc tgcgacgatg cgccccgggt
     1141 ggacagcacg aacacgccgg cgccccgtgc atccgggctg gtgaaggaat cggcgtggac
     1201 cgagatgaag atgtcggccc gcgccgcgtg tgccttgcgc gcgcgctgcg gcaacgggat
     1261 gaaatagtcg gaatcgcggg tcaggtaggc cttcagcccg ggcgtggcgt cgacctgccg
     1321 cgccagctcg cgcgcaatgg ccagggtgac gtccttctcg cgggtgccgt cgccgcccag
     1381 cgcgccggtg tcctggccgc cgtggccggc gtcgatggcg atgaccagcg gacgcatgcc
     1441 gccgcggcgg gcgatgtcct ccaaggtctt gaccggcgtc gggcttggac tggccggccc
     1501 cgttggagat gcaggcgcct gtgcgatgcc cgggtcgccg ggcgtgggcg tcgcggcggg
     1561 cgactgggcg ggcgccggct gcgtgctgcc cggcgcgggg atggtgatgg gcgcggtcgt
     1621 gaccggctgc ggggccgcgg tcgtggcgcc ggcggaggac gcgatcgccg gggtggcccc
     1681 atcgcccggc cattcgagca ccagccgcgc gccatccggg ccgggctcga aatgcggctt
     1741 gagcgcgacc accgggctgg cgaggtcgaa cacgatgcgc agggtgccgg gcgctggctg
     1801 gccgctgcgc acggcacgga ccaggccgga gggcgtcggc aggcgcaggg ccttgtccgt
     1861 gcgtgcgccg ggcaggtcga cgaccagccg ctcgggcgcg gacagggaaa tcagctggta
     1921 ggacgactcg cgatccaggc gcagttcggc gcgggtcccg gtcgcgccgc tgcgcagttc
     1981 gatgccgcgc agttcggccg cctcggcgag gttccagcac accccggcca gcagggccag
     2041 ggcgagcagg aattgctgga cggtggcccc cttcacgcgc atggccggat tcaagcacca
     2101 gccggcaggc tttgcaagcg gtttttcctt acggatccga gacctgccgg atgttcctgc
     2161 ctgcggaggt cagcaaggcg cggtaagccg gcgtttcggt catcccggcc agccagtcgc
     2221 gacccgccgc ggtccccgcc accaggtcgg cggtccgccc gccggccggc gccaccgcga
     2281 ggtcgatccg cagatccgcc tgcggcagcg ccggaccacc gcgttccggc cattcgacca
     2341 gccagagggt ggcggcggca tcgtccaggg cgaggaattc cagctccccc gcgtcaccga
     2401 tccggtacag gtccaggtgc aacgccttgc cgccttcggg caggcgcgcg tcggcgtacg
     2461 ggtaatgctc gaccagcgtg taggtcgggc tgcggatcgc gccggtcacg ccgagcgccc
     2521 gcagccacgc tcgcgcgagg ctggacttgc ccgcgccgag gtcgccgtgc aggtgcacca
     2581 cggcgcgggc gggctgcgcc tgcgccagca ggtggccgaa agcctcggtc gcggacggat
     2641 cggccaggtg cagcgtggtc atgcggcggg gtccggattg gcgaggcgat gcagcgcggg
     2701 caggaggtcc gacgcgagca gcccgcgttc gccgagctcg cgcgcggcgg cgtcgccggc
     2761 cgcgccgtgc aacagcgcgg cgcagcttgc ggcgtcgaat gcgcagagcc cctgcgcgcg
     2821 cagcgccgcg gccacgccgg tgagcaggtc gcccatgccg ccggtggcca tgccgggatt
     2881 gcccgcggtg acgacgcggg gccgagcctg cggcgcggcg acgatcgtgc cggcgccttt
     2941 cagcacgatg gtgcagccat ggcgctcgac cagcgttgcc gcggcggcga aacggtcctg
     3001 ctgcacgtcg cgcgcatcgc agccgagcag gcgcgcggct tcgccgggat gcggcgtcag
     3061 gatcgcgtcc gcgggcagcg cgcgcggcgc atcggcgagg aggttgagcg cgtccgcatc
     3121 cagtaccagc ggtttgcctg cagcgagcgc ggcggccagc atcgcccggc cccatttccc
     3181 ctggcccagt cccggcccga tcgcgacgac gctcgcgcgt cgcagcaatg gcgcgagcgt
     3241 gtgcgcgtcg tcgaccacgt gcggcatcgc ctcggggcga cgcgcgagca gcggcgcgac
     3301 gtgttccgcg cgcgacgcca cgctgaccag tccggcgcca cagcgcaacg cggcttccgc
     3361 gcaggccagg atcgcgccgc cgctgccgtg gtcgccgccg atgcacagca cgtgcccgta
     3421 gaggcccttg tggctgttgc gcgggcgtgg ctgcagccac cgcgcgagat cgcccgcatg
     3481 cagcgcactg gccgccggct gcaccgtgcc ggccgccacg tcgagcgtgg cgacccggca
     3541 ttcgccgacg tggtcgagcg cgtcgccggt ggcgagcccg cgatgggcgc cgagcatctg
     3601 cagcgtcagt gtcgcgcgca cggcgtggcc gggcacgcgg ccgctgtcgg cgtcggcgcc
     3661 gctcggcacg tcgagcgcga acaccggccc gtcgaacgcg cgcatcgcct cgatcgccac
     3721 ggccgcttcg ccttccggcg cgcgcgccag gccgatgccg aacagcgcgt ccaccagcag
     3781 gtcgccgcgc ggcatcccgc catcgaaggc agcgatcgcg caaccggccg cattgcactc
     3841 cgccagcgcc cggcgcgcgg tgtcggtgcg cggcgcgccc acctgccgca cctgcaccgt
     3901 gcgaccgctg cgcccggcat gcgcggccag caggtagccg tcgccgccgt tgttgcccgg
     3961 cccgcacgcg accacgagcc gctgcgcctg cggccaacgc gccagcagga ggcgccacgc
     4021 cgccgcgccc gcgcgctgca tcagcgcgaa gtcatcgccg gccacggcgg acgcgcgctg
     4081 ttccagcgcg cgcagggagg cggtgtcgta aagcggctcc atgcgggcga ttctacgcag
     4141 ccgccgtcgg cgcgctgaat gcttcaggcc gggacgccgg cggccagcgc agccgcgggc
     4201 ttcctatact ggccgaatgc agtccgcccc cgctcccgcc gccgacctcg gtgcgctcgc
     4261 cagtcgcatc aaggcgctcg cgcacgaagc cggtttccag cgctgcggca tcagcggcat
     4321 cgagctcggc aaggacgagg cgcacctgca cgactggctg gcgcagggcc tgtatggctc
     4381 gatggagtgg atggcgcgcc acggcgacaa gcgctcgcgc ccggccgaac tcatccccgg
     4441 aaccgtgcgg gtggtgtcgg tcggcctcga ctacggccgc gacgccggcg aagcctggga
     4501 cacgctcgcc gacggcggcc gcgcctacgt cgcccgctac gcgctcggcc gcgactacca
     4561 caagctcatg cgcaaccgcc tgcaacagct ggccgggcgc atcgctgacg aggtcgggcc
     4621 gttcggccac cgcgtgttcg tcgattcggc gccggtgctc gagcgtgcgc tcgcgcgcaa
     4681 cgcgggcctg ggctggatcg gcaagcacac ctgcctgatc gaccgcgatg gcgggtcgtg
     4741 gttcttcctc ggcgagatct acgtcgacct cccgctgccg gtggatcccc cggcgagcgc
     4801 gcactgcggc agctgcatgc gctgcatcga catctgcccg acccgggcga tcaccgcgcc
     4861 ctaccgcctg gatgcgcggc gctgcatctc ctacctgacc atcgagcacg aaggcgccat
     4921 cgacgaggaa ctgcgcccgc tgatcggcaa ccgcatcttc ggctgcgacg actgccagct
     4981 ggtctgcccc tggaacaagt tcgcgaagcg caccgacgag cccgatttcc gcgtgcgcaa
     5041 cgacctcgac aaggccacgc tggcccatct gttcgcgtgg agcgagtcgg aattcctgca
     5101 gcgcaccgaa ggctcggcga tccgccgcag cggctaccag cgctggctgc gcaacatcgc
     5161 gatcgcgctc ggcaacgcgc cggccacgcc ggaagtgctg gcggcgctgg cgtcgcggcg
     5221 cgacagcgac gacctggtcg tgcgcgagca cgtgcagtgg gcgctcgccc ggcacgcggc
     5281 gcgcccgggc gcggctggcg atgaccgggt tcccgtccgg atcgctggca cggagcgata
     5341 gcagcgaccc tgcgccccag ggaggttgat cttccgggcg ccgaatggaa ggcgtgcggc
     5401 acgcgccgaa cgccagggac gtcgcgccga cggtgtcgcg tcggaagcgc gtggccgcct
     5461 cgatcgggcg acggcgagga cgcagtggcc gcgcgccaag cgcccgcgga cgcttatgcg
     5521 gcggcctggg cggggatcga cgtgttggtg tgggtcaggc ggttgtcgcg gtcgacgtag
     5581 accagcgtcg gcttgtactt ggccgcctcg gcctcgtcgc agacgccata ggcgcagatg
     5641 atgacgaggt cgccgactgc cgcgcggtgg gccgcggcgc cgttcaccga gatgatgccg
     5701 ctgccctcct cggcgcggat cgcgtaggtg acgaagcggt ggccgctgtt cacgttgtag
     5761 atgtggatct gctcgtactc gcggatgccg gagatgtcga gcaggcggcc gtcgatcgcg
     5821 caggagcctt cgtagtgcag ctcggcgtgg gtgacggtgg cccggtggat cttggccttg
     5881 aggatgttca gctgcatcgc agggctccgg ccggacggcc gagggcaagg aaggtgcgca
     5941 gtgtaggcag ggggttgacg caccgcaaca tcgcgcgccc gggcggttgg cgcgcggcca
     6001 gcaagctcaa ccggcgtcga attcgaggtt gtcgatcagg cgggtgcggc cgagccgggc
     6061 ggcgaccagg gcgacccggc ggccgtgctc gccgtcgacc ggc
//
LOCUS       DATIQC010000290         2090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_337018, whole genome shotgun sequence.
ACCESSION   DATIQC010000290 DATIQC010000000
VERSION     DATIQC010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337018"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1028
                     /locus_tag="VLM17_06155"
     CDS             <1..1028
                     /locus_tag="VLM17_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007962710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HSR65170.1"
                     /translation="KQAFRPSPTFSAATAASTPEFRAGVAAGSIAACKADHLVAAGFL
                     QDGQRFEAFANSRGNYGYQQGSGMDYTCTVRTDDGHGSGWVGRSLGDAGRFDVKRDID
                     IAVRKARGSAGAKALEPGKYTVILEPAASAGLISFMMNFFDARQADEGRSFLSKKGGG
                     NKLGQQVYDPRVNIRANPWDADVPVMPWDDEGLAREDMPIVQDGKVVALDYSRYWAQK
                     NGKRAVGTPGNLIMSGGDKSTADLVRGTRKGILVTRTWYIRLVDPQTVLLTGLTRDGT
                     FYIEDGEIKYPVKNFRFNESPVIMLNNIEELGKPVRVQGDESSLLMMLPPMKLRDFTF
                     TSLSDAV"
     gene            1147..1842
                     /locus_tag="VLM17_06160"
     CDS             1147..1842
                     /locus_tag="VLM17_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017355469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4159 domain-containing protein"
                     /protein_id="HSR65171.1"
                     /translation="MTRAEFLRLALGAFAGAALPRKAAAAQYDFWFTRLKYDSGDWDV
                     DQRMPANLLTSLVDYTNLRVDPKERVVALADPKMLRAPFCYLAGHKLVEFNPAERRNF
                     ERYVRNGGFVFVDDCNHDIDGLFARSFERQMAAMFGGDALRKLPKDHPVYRSFFVFKD
                     GPPNTGIELNGWGDDLVHDYLRGITIDGRLGVLYSNKDYGCEWDYDWRNKRWLAEDNT
                     RFAVNIAVYALTA"
     gene            1856..>2090
                     /locus_tag="VLM17_06165"
     CDS             1856..>2090
                     /locus_tag="VLM17_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012436921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSR65172.1"
                     /translation="MTALTESQLQEQIGRLATLRQAIARAIVGQDAVVEQLLVALLAG
                     GHCLLEGVPGLGKTLLVRSLGQALDLPFRRVQFT"
BASE COUNT          339 a          759 c          691 g          301 t
ORIGIN      
        1 agaagcaggc cttcaggccc agcccgacct tcagcgccgc caccgccgcg agcacgccgg
       61 aattccgcgc cggcgtcgcc gccggctcga tcgccgcctg caaggcggac cacctggtgg
      121 cggccggctt cctgcaggac ggccagcgct tcgaggcctt cgccaacagc cgcggcaact
      181 acggctacca gcagggcagc ggcatggact acacctgcac cgtgcgcacc gacgacggcc
      241 acggctcggg ctgggtcggc cgaagcctcg gcgacgcggg ccgcttcgac gtcaagcgcg
      301 acatcgacat cgccgtgcgc aaggcgcgcg ggtccgcggg cgccaaggcg ctggaaccgg
      361 gcaagtacac ggtgatcctc gagcccgccg catcggccgg cctgatctcc ttcatgatga
      421 atttcttcga cgcgcgccag gccgacgagg gccgcagctt cctgtcgaag aagggcggcg
      481 gcaacaagct cggccagcag gtctacgacc cgcgcgtcaa catccgcgcc aacccgtggg
      541 acgccgacgt gccggtgatg ccctgggacg acgagggcct cgcccgcgag gacatgccga
      601 tcgtgcagga cggcaaggtc gtggcgctcg actactcgcg ctactgggcg cagaagaacg
      661 gcaagcgcgc ggtcggcacg ccaggcaacc tgatcatgtc gggcggcgac aagtccaccg
      721 ccgacctcgt gcgcggcacc cgcaagggca tcctggtcac ccgcacctgg tacatccgcc
      781 tggtggatcc gcagaccgtg ctgctcaccg gcctcacccg cgacggcacg ttctacatcg
      841 aggacggcga gatcaagtac ccggtcaaga acttccgctt caacgagtcg ccggtgatca
      901 tgctcaacaa catcgaggaa ctcggcaagc cggtgcgcgt gcagggcgac gagtcctcgc
      961 tgctgatgat gctgccgccg atgaagctgc gcgacttcac gttcacctcg ctgtccgacg
     1021 ccgtctgagc ggcaccatgc gccttccccg ctgccgcgtg cgcaccgccg ggccgacgtc
     1081 cctgaacgtc ttcccggcgg tcgcgcgcgc gtccgcgcgg cgggggtggc gcgcgcgcgg
     1141 ggcgcgatga cccgcgcgga gttcctgcgg ctggcgctgg gcgccttcgc cggggcggcg
     1201 ttgccgcgga aggcggcggc ggcgcagtac gacttctggt tcacccgcct caagtacgac
     1261 tccggcgact gggacgtcga ccagcgcatg ccggcgaacc tgctgacctc gctggtcgac
     1321 tacaccaacc tgcgcgtcga cccgaaggag cgcgtggtcg cgctggccga cccgaagatg
     1381 ctgcgggcgc cgttctgcta cctggccggg cacaagctgg tcgagttcaa cccggccgag
     1441 cgccgcaact tcgagcgcta cgtgcgcaac ggcggcttcg tcttcgtcga cgactgcaac
     1501 cacgacatcg acggcctgtt cgcgagatcc ttcgagcggc agatggcggc gatgttcggt
     1561 ggcgacgcgc tgcggaagct gccgaaggac catccggtct accgcagctt cttcgtgttc
     1621 aaggacggcc cgccgaacac cggcatcgag ctcaacggct ggggcgacga cctcgtgcac
     1681 gactacctcc ggggcatcac catcgacggc cgcctcggcg tgctctacag caacaaggac
     1741 tacggttgcg aatgggacta cgactggcgc aacaagcgct ggctggccga ggacaacacc
     1801 cggttcgccg tcaacatcgc cgtctatgcg ctgaccgcct gacttctcga acaccatgac
     1861 cgcactcacc gaatcccagt tgcaggaaca gatcggccgc ctcgccacgc tgcgccaggc
     1921 catcgcgcgc gccatcgtcg gccaggacgc ggtggtcgag cagttgctcg tggccctgct
     1981 cgccggcggc cattgcctgc tcgaaggcgt gcccggcctc ggcaagacgc tgctggtgcg
     2041 ctcgctcggc caggcgctcg acctgccctt ccggcgcgtg cagttcactc
//
LOCUS       DATIQC010000291         1894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_230870, whole genome shotgun sequence.
ACCESSION   DATIQC010000291 DATIQC010000000
VERSION     DATIQC010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230870"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="VLM17_06170"
     CDS             <1..505
                     /locus_tag="VLM17_06170"
                     /inference="COORDINATES: protein motif:HMM:NF018644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HSR65173.1"
                     /translation="ERPGRRPAVGDRVSYAVARDARGRRTAVQLRFAGATPIPVKPTR
                     GAPVGHVFPRRALVLLACAALALAAWNRALPPAVLLAYAIASVVTFLAYARDKHAAER
                     GGWRTRESTLHTFALLGGWPGALLAQGLLRHKSSKAGFQWVFWCTVLLNGAGVAWALR
                     ALRGDAG"
     gene            complement(1163..1801)
                     /locus_tag="VLM17_06175"
     CDS             complement(1163..1801)
                     /locus_tag="VLM17_06175"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HSR65174.1"
                     /translation="MKVGILGSGVVAQTLGSGFLAHGHAVLLGTRDAAKLADWQAANA
                     GGRVGDFAQAAEFGDLVVLAVKGTAAADALRAAGADRLGTKVVIDATNPIADAPPQNG
                     VLRFTTTLDEALMEQLQREFPRARLVKAFNSVGNALMVDPQLAGGPPSMFICGNDAAA
                     KDVVRGILGQFGWDTEDMGGVEAARAIEPLCILWCVPGFLHNDWRHAFKMLR"
BASE COUNT          222 a          738 c          660 g          274 t
ORIGIN      
        1 cgagcgcccg ggccggcggc cggcggtcgg cgaccgcgtc tcctacgcag tcgcgcgcga
       61 cgcgcgcggc cgtcgcaccg cggtgcagct gcgcttcgcc ggcgcgacgc ccattccggt
      121 caagcccacg cgcggcgcgc cggttggcca tgtcttcccg cgcagggcgc tcgtgctgct
      181 ggcctgcgcc gcgctcgcgc tggcggcatg gaatcgcgcg ctgccgcccg ccgtgctgct
      241 cgcctacgcc atcgccagcg tggtgacctt cctggcctac gcccgggaca agcacgccgc
      301 ggagcgcggc ggctggcgca cgcgcgaaag caccctgcac acgttcgccc tgctcggcgg
      361 ctggcccggc gcgctgctcg cgcagggctt gctgcggcac aagtccagca aggcgggatt
      421 ccagtgggtg ttctggtgca ccgtgctgct caacggcgcg ggcgtcgcgt gggcgctgcg
      481 cgccttgcgg ggagatgccg gatgacgaag cgttggcttt gcgcgctggt cgcgctgccc
      541 ctgcccggtg ttgcgggcgg cccgctgccc gccacggcgg ccgacggcgg cgcttccccc
      601 aaggacgctt gcctcccgac ctgaaccgcg cgcgtgtgcc ggtccgccgc ctggtgcgaa
      661 tgcgcgcata gttcccgtct gtcctgtcgc gccatccccg cgcttcaggc acatcccgcg
      721 ccccgatacc gctcggactg cagcagcagg tttcgagacg cgccgccatc gttcctttcg
      781 acggccgccc ggcctcgcgt cggcggccac gggcctcatc atgaacaagt tcttgcaacg
      841 cttcgcgaca ctgtcgcgac atccctcatc cctcgccgat gcgccgcagc gcgacgggtg
      901 gccggcgctc cccgagacgc cgcagcaacg acgccgcggg accgacgcgc ggccctgggt
      961 ggaggttcgc gcctccgatc acaccggcgc ccggggcgcg cgccgttgac gccacgcgcg
     1021 cgctccgtgc gcgcgcaccg ccaggcgagc cagcgtaccc gggtaagcgc agctatccgg
     1081 gcctgggtgc ggtgagtgtc ccgggtgcgg cctgcggcct gacccgggct acgatgctgc
     1141 gcctcaccca tgcgacgacg cttcaccgca acatcttgaa cgcgtgccgc cagtcgttgt
     1201 gcaggaagcc gggcacgcac cacaagatgc acagcggttc gatcgcacgc gcggcctcga
     1261 cgcctcccat gtcctcggtg tcccagccga actggccgag gatgccgcgc accacgtcct
     1321 tggcggcggc gtcgttgccg cagatgaaca tgctcggcgg tccgccggcc agttgcgggt
     1381 ccaccatcag ggcgttgccg accgagttga acgccttcac cagccgcgcc cgcgggaatt
     1441 cgcgctgcag ctgctccatc agcgcctcgt ccagggtggt ggtgaaccgg agcacgccgt
     1501 tctgcggcgg cgcgtcggcg atggggttgg tggcgtcgat gaccaccttc gtgcccagcc
     1561 ggtccgcgcc ggcggcgcgc agcgcgtccg cggcggcggt gcctttcacc gccagcacga
     1621 cgaggtcccc gaactccgcg gcctgcgcga agtcgccgac ccggcccccg gcgttcgcgg
     1681 cctgccagtc ggcgagcttg gccgcatcgc gcgtgcccag caggaccgcg tgcccgtggg
     1741 ccaggaagcc actgcccagc gtctgcgcca cgacgccgga ccccaggatg cccaccttca
     1801 tcgcctgcct ccttcgtgcg ctcgcgcgca tccggccgat cgggaatgcc acgggcgcgc
     1861 cggccaggac gcgccggcgt cgcgtgcgat cgtc
//
LOCUS       DATIQC010000292         8482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_584926, whole genome shotgun sequence.
ACCESSION   DATIQC010000292 DATIQC010000000
VERSION     DATIQC010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8482
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584926"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..239
                     /locus_tag="VLM17_06180"
     CDS             <1..239
                     /locus_tag="VLM17_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65175.1"
                     /translation="MRMLWDAGYDRIAVAYSDSSADLPLLQAARKPVVVNPKRGREAM
                     FRQALPPGTPILNWGCADRGGDPVGKGWQAPRSR"
     gene            complement(252..707)
                     /locus_tag="VLM17_06185"
     CDS             complement(252..707)
                     /locus_tag="VLM17_06185"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR65176.1"
                     /translation="MSASASFAPVRIRAAAIGDAPDVARLLEQLGYPCTRDEAAERIA
                     HVLGDPRQQLLLAEVEGHACGLASLDVRYSLTRGGDQARITALVVERAHARRGIGRAL
                     LREVEARARHGRVTRIEVTSNMRRDEAHAFYRDCGYSEGSRHFFKPLGD"
     gene            complement(716..1417)
                     /gene="crp"
                     /locus_tag="VLM17_06190"
     CDS             complement(716..1417)
                     /gene="crp"
                     /locus_tag="VLM17_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012481435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HSR65177.1"
                     /translation="MPATASQYVSSLHAPHRRPTSPLAPDAAAIDRFLGYCHRRRYPP
                     RTEVFRPGDPAGTLYYVVSGSVSIITEEDDGRELVLGYFGNGEFVGEMGLFIESDKRE
                     VILRTRVQCELAEISYERLYQLFDGPLQGDATKLLYAIGVQLSRRLLDTSRKAGRLAF
                     LDVTDRILRTLHDLTREPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADG
                     VLHARGKTVVLYGTR"
     gene            1531..2322
                     /gene="speD"
                     /locus_tag="VLM17_06195"
     CDS             1531..2322
                     /gene="speD"
                     /locus_tag="VLM17_06195"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005411315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004014 - adenosylmethionine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HSR65178.1"
                     /translation="MVKPLPRLKLQGFNNLTKALSFNIYDVCYAVSEEQRQRYIEYID
                     EAYNADRLTQILSDVAEIIGANILNIARQDYEPQGASVTILISEQPVIDKASAKGVIS
                     DAVVAHMDKSHITVHTYPETHPQHGIATFRADIDVATCGVISPLKALNYLIESLESDI
                     VVMDYRVRGFTRDIKGKKHYIDHRINSIQEFLAKNIRSRYEMFDVNVYQENIFHTKMH
                     LKEFDLDNYLFEEKAKNLSFKDRMKIEALLKREIEELFHGRNLVE"
     gene            complement(2463..3104)
                     /gene="coq7"
                     /locus_tag="VLM17_06200"
     CDS             complement(2463..3104)
                     /gene="coq7"
                     /locus_tag="VLM17_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014648661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone
                     monooxygenase"
                     /protein_id="HSR65179.1"
                     /translation="MTARHLTPLDRLLDGAQNALDTVFAGARAERPTPAAGHPAVVLD
                     DGTRRHVAGLMRINHVGEVCAQALYVGQAAVARDPRTRAQLLAAAQEETDHLAWCADR
                     LHELQSRPSLLNPVWYAGSYAIGALAGLRGDGWNLGFVVETERQVEAHLDEHLRQLPP
                     ADDRSRAILQAMKADEARHADNALAQGARALPPPVPTLMALASKLMKTVAYRI"
     gene            3362..3790
                     /gene="rplM"
                     /locus_tag="VLM17_06205"
     CDS             3362..3790
                     /gene="rplM"
                     /locus_tag="VLM17_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HSR65180.1"
                     /translation="MKTFIAKNETVQRDWYVVDAEGKTLGRLASELARRLRGKHKPVF
                     TPHVDTGDYLVVVNAEKIAVTGNKLQDKMYHRFTGYVGNLKSENLAQALQRHPERVLE
                     IAVKGMLPKNPLGRAMYKKLKVYAGPTHPHAAQQPQPLEI"
     gene            3801..4193
                     /gene="rpsI"
                     /locus_tag="VLM17_06210"
     CDS             3801..4193
                     /gene="rpsI"
                     /locus_tag="VLM17_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HSR65181.1"
                     /translation="MATTQNYGTGRRKSSTARVFLRKGDGKITINDRSIEDFFGRETA
                     RMIVRQPLELTKSTDKFDVMVTVEGGGTTGQAGAIRLGISRALVEYDESLKTELRKAG
                     FMTRDAREVERKKVGLHKARRATQFSKR"
     gene            4263..4337
                     /locus_tag="VLM17_06215"
     tRNA            4263..4337
                     /locus_tag="VLM17_06215"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4295..4297,aa:Gln,seq:ctg)
     gene            4435..5178
                     /locus_tag="VLM17_06220"
     CDS             4435..5178
                     /locus_tag="VLM17_06220"
                     /inference="COORDINATES: protein motif:HMM:NF021527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe dioxygenase family protein"
                     /protein_id="HSR65182.1"
                     /translation="MVATFSAPAVRLEHAGPQLRERGFAVLAPADVAALCGTSLEALH
                     ALAPSWNALVADRYLKDGGRYRQRRHACFVVEGEAVLPAPHRAHWQPLEYNALHGGMH
                     RWFEPVAGAVAAAPAWRSLLRGFGGLFSRLKPVPRWHVEAHQFRIDTAGGLGRPTPEG
                     AHRDGVDFVAVFLVDRSGIKGGETRVFDADGPDGQRFTLEAPWSVLLLDDARVIHEST
                     PIQPLGDHGHRDTLVLTYRAGGFQGDGTR"
     gene            5343..6332
                     /locus_tag="VLM17_06225"
     CDS             5343..6332
                     /locus_tag="VLM17_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014091103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HSR65183.1"
                     /translation="MKLGSLKEGGRDGTLVVVSRDLARAVRAGAIAPTLQRALEDWSN
                     AAPRLNALSEALNAGQADGAFDLDMAQLAAPLPRAYEFVDGSAYLPHVERVRRARGAE
                     VPESFYTDPLMYQATSAGFLGPRDPVRVIDEAYGIDLEAEIVVVTDDVPMAVTPDQAA
                     AHIQLVGLVNDVSLRNLIPGELAKGFGFLQSKPRSALSPVFVTPDELGEAWRGSKLHL
                     PLLTHVNGEWFGAPEAGVDMQFDFAQLVAHAAKTRPLAAGAIVGSGTIANQDTSLGAS
                     CFAEKRTVETLAHGKPLTPFLSFGDQVRIEMLDREGRSIFGAIEQRIERQPRP"
     gene            6438..7109
                     /gene="maiA"
                     /locus_tag="VLM17_06230"
     CDS             6438..7109
                     /gene="maiA"
                     /locus_tag="VLM17_06230"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HSR65184.1"
                     /translation="MTDRLCLYSYWRSSAAYRVRIGLNLKGLPYELMPVHLLRDGGEQ
                     HSEAYRQANPQQLVPVLQHGQRMLRQSLAILEYLDEMWPEPPLLPATARDRQRVRALA
                     QLVACDIHPLNNLRVLQYFERDWGVPQAERDVWVKHWIAEGFAAFEALLEDHPSTGVF
                     CEGDVPGIADCCLVPQLYNARRFGMDLSHYPTMLRIEKACLGLAAFDAARPERQPDAP
                     SAVPA"
     gene            complement(7123..8241)
                     /locus_tag="VLM17_06235"
     CDS             complement(7123..8241)
                     /locus_tag="VLM17_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009575523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HSR65185.1"
                     /translation="MDIGYFLKLMTEKNASDMFLTTGAPVHIKVEGKLYPLGNTGLPA
                     GMVKKIAYSLMDEGQVPQFERDLEMNMAIALPDSGRFRVNVFKQRGEVGMVIRAIRSV
                     IPSIEELQLPQVLKDIIMAPRGLVLIVGSTGSGKSTSLAAMIDHRNTHSAGHILTIED
                     PIEYLHKHKKSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDATTMEAAIAFA
                     ETGHICLATLHSNNADQTIERILNFFPEGAHKNVLMNLSLNLKAVVSQRLVVGVDGRR
                     MPATEVLINTPMIRDLLRRGQIHEIKQAMEESLEAGMESFDQCLYRLYKEGKIEREAA
                     LNAADSREGLALKFRLSEGATGEHDPYADVFDTGGGAR"
BASE COUNT         1287 a         2959 c         2935 g         1301 t
ORIGIN      
        1 agatgcgcat gctgtgggac gccggctacg accgcatcgc ggtcgcctat tcggacagca
       61 gcgcggacct gccgctgctg caggccgcgc gcaagccggt ggtggtcaat cccaagcgtg
      121 ggcgcgaggc gatgttccgc caggcgctgc cgcccggcac gccgatcctc aactggggct
      181 gcgcggatcg cggtggcgac ccggtcggca agggctggca ggcgccgcga tcgcgctagg
      241 cgcgcgccgg gtcagtcgcc cagcggcttg aagaaatgcc gcgagccctc gctgtaaccg
      301 cagtcgcggt agaacgcatg ggcctcgtcg cggcgcatgt tgctggtcac ctcgatgcgg
      361 gtcacgcggc cgtgccgcgc gcgcgcctcg acctcgcgca gcagcgcacg gccgatgccc
      421 cggcgggcgt gcgcgcgttc gacgacgagg gcggtgatcc gcgcctggtc gccgccgcgg
      481 gtgagggagt agcgcacgtc cagcgaggcg agcccgcagg cgtggccctc gacctcggcc
      541 agcagcagct gctggcgcgg gtcgccgagc acgtgggcga tgcgctcggc ggcctcgtcg
      601 cgggtacagg gatagccgag ctgttcgagc aggcgggcga cgtcgggtgc gtcgccgatc
      661 gccgcggcgc ggatccgcac gggggcgaac gacgcgctcg cggacatggg cgccttcagc
      721 gcgtgccgta caggacgacg gtcttgccgc gcgcgtgcag cacgccgtcg gcctgcagtt
      781 tcttgagcac gcggccggcc atctcgcgcg agcagccgac caggcgggcg agctcctggc
      841 gcgagacgcg cagctgggtg ccctgcgggt ggctcatcgc ctccggctcg cgggtcaggt
      901 cgtgcagggt gcgcaggatg cggtcggtga cgtcgaggaa ggccagccgg ccggccttgc
      961 ggctggtgtc cagcaggcgg cgcgagagct gcacgccgat cgcatacagc agcttggtcg
     1021 cgtcgccctg cagcgggccg tcgaacagct ggtacaggcg ttcgtagctg atctcggcca
     1081 gttcgcactg cacgcgggtg cgcaggatga cctcgcgctt gtccgactcg atgaaaaggc
     1141 ccatctcgcc gacgaactcg ccgttgccga aatagccgag caccagttcg cggccgtcgt
     1201 cttcctcggt gatgatgctg accgagccgg agaccacgta gtacagggtg ccggcgggat
     1261 cgcccgggcg gaacacctcg gtgcgcggcg gatagcgccg gcggtggcag tagccgagga
     1321 aacggtcgat ggccgccgca tccggggcca gcgggctggt cggtcgccgg tgcggggcat
     1381 gcagcgacga cacgtattgg gaggcggtgg caggcatggg ccgagaatag gccgttgccg
     1441 cttcctcggc aaacgggacg gccgccaccc cccatgcacg ccgtatgccg cataatcgcg
     1501 ccccttcgcc gacgaccggg acacgccaac gtggtcaaac cgctgccgcg cctcaagctc
     1561 caggggttca acaacctgac caaggcgctg tcgttcaaca tctacgacgt ctgctacgcg
     1621 gtgtccgagg agcagcggca gcggtacatc gagtacatcg acgaggcgta caacgccgac
     1681 cgcctgaccc agatcctgag cgacgtcgcc gagatcatcg gcgccaacat cctcaacatc
     1741 gcccgccagg actacgagcc gcagggcgcg tcggtgacga tcctgatcag cgagcagccg
     1801 gtgatcgaca aggcgtccgc caagggcgtg atctccgatg ccgtcgtcgc gcacatggac
     1861 aagtcgcaca tcacggtgca cacctacccg gagacgcacc cgcagcacgg catcgcgacc
     1921 ttccgcgccg acatcgacgt ggcgacctgc ggcgtgatct cgccgctgaa ggcgttgaac
     1981 tacctgatcg agagcctcga gtccgacatc gtcgtcatgg actaccgcgt gcgcggcttc
     2041 acccgcgaca tcaagggcaa gaagcactac atcgaccacc ggatcaactc gatccaggaa
     2101 ttcctcgcca agaacatccg ctcgcgctac gagatgttcg acgtgaacgt ctaccaggaa
     2161 aacatcttcc acacgaagat gcacctgaag gaattcgacc tcgacaacta cctgttcgag
     2221 gagaaggcga agaacctctc cttcaaggac cggatgaaga tcgaggcgct gctcaagcgc
     2281 gagatcgagg agctgttcca cgggcgcaat ctggtcgaat gaccaaattg ctccccaagg
     2341 tttgctgcgc aaaccttggg ctccgggcat gcatgccaaa tacccccgct gtcgcgcgcc
     2401 ccttttacta aaaggggctg ttttttgagc gaggcgcgcg gcgatctgac cgactggcct
     2461 cgtcagatcc ggtacgccac cgtcttcatc agcttcgacg ccagcgccat cagggtcggc
     2521 accggcggcg gcagggcgcg cgcgccctgc gcgagcgcgt tgtcggcgtg gcgcgcttcg
     2581 tcggccttca tggcctggag gatcgcccgg ctgcggtcgt ccgccggcgg cagctgccgg
     2641 aggtgttcgt cgaggtgggc ctcgacctgg cgctcggtct cgaccacgaa gccgaggttc
     2701 cagccgtcgc cgcgcaggcc ggcgagcgca ccgatcgcgt agctgccggc gtaccagacc
     2761 gggttgagca ggctcggacg gctctggagt tcgtgcaggc ggtcggcgca ccaggcgagg
     2821 tggtcggtct cctcctgcgc cgcggcgagc agctgcgcgc gcgtgcgcgg gtcgcgcgcg
     2881 accgcggcct ggccgacgta gagggcctgc gcgcagacct cgccgacgtg gttgatgcgc
     2941 atcaggccgg ccacgtgccg gcgcgtgccg tcgtcgagca cgacggcggg gtggccggcc
     3001 gcaggggtcg ggcgttccgc gcgggcgccg gcgaagacgg tgtcgagcgc gttctgcgcg
     3061 ccgtcgagga ggcggtccag gggcgtgagg tggcgtgcgg tcatggcgtg gggagcatgg
     3121 gtggatcgcc ccggcggacc gccgggccgt tgcgccggcg gagtcgtttg ccgggtgggg
     3181 gcgggcaggc cagtgtacgg gcggaggcgg ggcggcccgc gaagcgtcct ggcggcttgc
     3241 gatcgccgcc gcggcccgct atcattccgc ctcttttgtt cagcccatcg cgtggcgacg
     3301 ttccggccgg cccagtccgt gtccgcaacc agcccgacaa ggtaccgacc acgaagccgt
     3361 catgaagact ttcatcgcca agaacgaaac cgtccagcgc gactggtacg tggtcgatgc
     3421 cgaaggcaag accctcggcc gcctcgcctc cgagctcgcc cgccgcctgc gcggcaagca
     3481 caagcccgtg ttcaccccgc acgtcgatac cggcgactac ctcgtggtgg tcaatgccga
     3541 gaagatcgcg gtgaccggca acaagctgca ggacaagatg taccaccgct tcaccggcta
     3601 cgtcggcaac ctgaagtcgg agaacctggc ccaggcgctg cagcgccatc ccgagcgcgt
     3661 gctcgagatc gcggtcaagg gcatgctgcc gaagaatccg ctcggccggg cgatgtacaa
     3721 gaagctcaag gtctacgccg gcccgaccca cccgcacgcc gcccagcagc cgcagccgct
     3781 cgagatctaa ggtcacactc atggcaacca cccagaacta cggtaccggc cgccgcaagt
     3841 cctccaccgc gcgcgtgttc ctgcgcaagg gcgacggcaa gatcaccatc aacgaccgct
     3901 cgatcgaaga cttcttcgga cgcgagaccg cgcgcatgat cgtgcgccag ccgctcgaac
     3961 tgaccaagtc gaccgacaag ttcgacgtca tggtcacggt cgagggcggc ggcaccaccg
     4021 gccaggccgg cgccatccgc ctgggcatct cgcgcgcgct ggtcgagtac gacgagtcgc
     4081 tgaagaccga gctgcgcaag gccgggttca tgacccgcga cgcgcgcgag gtcgagcgca
     4141 agaaggtcgg cctgcacaag gcccgccgcg cgacccagtt ctccaagcgt taatgctcct
     4201 gcgacggagc gcggcgcacc cgcttgggcg gcgtcgcact ccggcgttac aatccgctgc
     4261 atagccccgt cgccaagcgg taaggcacct gactctgact caggcattcg gtggttcgaa
     4321 tccatccggg gctgccatcc aatgactgca ccgcagtcgc ccaaagaccc gcttcggcgg
     4381 gtctttgcgt ttgggcccgc cgcgcgcggg cccggccggc aaagaggagg tgccgtggtc
     4441 gccacgtttt ccgcccccgc cgtccggctg gagcacgccg ggccgcaact gcgcgaacgc
     4501 ggcttcgcgg tgctcgcgcc ggccgacgtc gccgcgctgt gcggcacctc cctcgaggcc
     4561 ctgcacgcgc tggccccgag ctggaacgcc ctggtcgccg accgttacct caaggacggc
     4621 ggccgctacc gccagcgccg gcacgcgtgc ttcgtggtcg aaggcgaggc cgtgctgccg
     4681 gcgccgcacc gcgcgcactg gcagccgctg gaatacaacg cgctgcacgg cggcatgcat
     4741 cggtggttcg agccggtcgc cggcgcggtc gccgcggccc cggcctggcg gtccctgctg
     4801 cgcggtttcg gcggactgtt ttcccggctc aagccggtcc cgcgctggca tgtcgaagca
     4861 caccagttcc ggatcgacac cgcgggcggg ctcggccggc cgacgccgga gggcgcgcac
     4921 cgcgacggcg tggatttcgt cgcggtgttc ctggtcgacc gcagcggcat caagggcggc
     4981 gagacccggg tgttcgacgc cgacggcccc gacggccagc gcttcaccct cgaggccccg
     5041 tggagcgtgc tgctgctcga cgatgcgcgg gtgatccacg aatcgacgcc gatccagccg
     5101 ctcggcgacc acggccatcg cgacacgctg gtgctgacct atcgcgccgg cggtttccag
     5161 ggggacggga cgcgctgagc agatgcccta tcggcatccg ctgcgtctcg tccgcccggc
     5221 catggatggc cgggcagggc catccgggag tcttggcgtt gcgccatgga cggcatcgct
     5281 ggaatacggg tgggccatcg ttacaattga aaccatcgaa tccgcacgag gccggtcccc
     5341 gcatgaagct cggttccctg aaggaaggcg gtcgcgacgg caccctggtc gtcgtctcgc
     5401 gcgacctcgc ccgcgccgtg cgcgccggcg ccatcgcgcc gacgctgcag cgcgcgctgg
     5461 aggactggag caacgccgcg ccgcgcctca atgccctgtc cgaggccctg aacgccggcc
     5521 aggccgacgg cgccttcgac ctcgacatgg cccagctggc cgcgccgttg ccgcgcgcct
     5581 acgagttcgt cgacggctcg gcctacctgc cgcatgtcga gcgcgtgcgc cgcgcgcgtg
     5641 gcgccgaggt gccggaaagc ttctacaccg atccgctgat gtaccaggcg accagcgccg
     5701 gcttcctcgg tccgcgcgac ccggtgcgcg tgatcgacga ggcctacggc atcgatctcg
     5761 aggcggagat cgtggtggtc accgacgacg tgccgatggc ggtcacgccc gaccaggccg
     5821 ccgcgcacat ccagctcgtc ggcctggtca acgacgtgtc gctgcgcaac ctcatccccg
     5881 gcgaactggc gaagggcttc ggcttcctcc agtccaagcc gcgctcggcg ctcagcccgg
     5941 tgttcgtgac gccggacgag ctcggcgagg cgtggcgggg cagcaagctg cacctgccgc
     6001 tgctgacgca cgtgaacggc gaatggttcg gcgcgccgga ggccggggtg gacatgcagt
     6061 tcgacttcgc ccagctcgtc gcgcatgcgg cgaagacgcg gccgctggcg gccggcgcga
     6121 tcgtcggctc gggcacgatc gccaaccagg acacctcgct cggcgcgtcg tgcttcgccg
     6181 agaagcgcac cgtcgagacg ctcgcgcacg gcaagccgct gacgccgttc ctgtccttcg
     6241 gcgaccaggt gcggatcgag atgctggacc gcgaggggcg cagcatcttc ggcgcgatcg
     6301 agcagcgcat cgagcgccag ccgcgcccct gagcgctccg cgcgaacggg ccgccggcgc
     6361 gaccggcggt cttccgtgtt caggccgcgg ccgctaaggt gccgcaggcg gccatcgttg
     6421 ccgcacagga gcgttgcgtg accgaccggc tgtgcctgta ttcgtactgg cgttccagcg
     6481 ccgcctaccg cgtgcgcatc ggcctcaacc tcaaggggct gccgtacgag ctgatgccgg
     6541 tgcacctgct gcgcgacggc ggcgaacagc attcggaagc ctaccgccag gccaacccgc
     6601 agcagctggt gccggtgctg cagcatggcc agcgcatgct gcgccagtcg ctcgccatcc
     6661 tcgaatacct cgacgagatg tggccggagc cgccgctgct gccggccacc gcgcgcgacc
     6721 gccagcgcgt gcgtgcgctc gcccagctcg tcgcctgcga catccacccg ctcaacaacc
     6781 tgcgcgtgct gcagtacttc gagcgcgact ggggcgtgcc gcaggccgag cgcgacgtgt
     6841 gggtgaagca ctggatcgcc gagggcttcg ccgcgttcga ggcgctgctc gaggaccatc
     6901 cgtcgaccgg cgtgttctgc gagggcgacg tgcccggcat cgccgattgc tgcctggtgc
     6961 cgcagctgta caacgcgcgc cgcttcggca tggacctgtc gcactacccg accatgctgc
     7021 gcatcgaaaa ggcctgcctc ggtctggccg ccttcgacgc cgcgcgcccg gagcgccagc
     7081 cggacgcgcc ctccgccgtg cccgcctgag cgggcgctgc gctcagcgcg cgccgccgcc
     7141 ggtgtcgaat acgtccgcgt aggggtcgtg ctcgccggtg gccccttcgg acaggcggaa
     7201 cttgagcgcc aggccttcgc gcgagtcggc cgcgttgagc gccgcctcgc gttcgatctt
     7261 gccttccttg tacaggcggt acaggcactg gtcgaagctt tccatgccgg cctcgagcga
     7321 ttcctccatc gcctgcttga tctcgtggat ctggccgcgg cgcagcaggt cgcggatcat
     7381 cggcgtgttg atcagcacct cggtcgccgg catgcggcgg ccgtcgacgc cgaccaccag
     7441 gcgctgggag accaccgcct tcaggttcag cgaaagattc atcagcacgt tcttgtgcgc
     7501 gccctcgggg aagaagttga ggatgcgctc gatggtctgg tcggcgttgt tggagtgcag
     7561 cgtcgccagg cagatgtggc cggtctcggc gaaggcgatc gccgcctcca tcgtcgtcgc
     7621 gtcgaggatc tcgccgatca ggatcacgtc cggcgcctcg cgcatcgcgt tcttcagcgc
     7681 gttgtggaag gcgtgggtgt cgaggccgac ctcgcgctgg ttgacgatcg acttcttgtg
     7741 tttatgaaga tattcgatcg gatcctcgat ggttaggatg tggccggccg aatgggtgtt
     7801 gcgatggtcg atcatcgccg ccagcgaggt cgacttgccc gagccggtcg agcccacgat
     7861 cagcacgagg ccgcgcgggg ccatgatgat gtccttgagc acctgcggca gctgcagttc
     7921 ctcgatcgac gggatcacgc tgcggatcgc gcggatcacc atgccgacct cgccgcgctg
     7981 cttgaacacg ttgacgcgga agcggcccga atcgggcagc gcgatcgcca tgttcatctc
     8041 caggtcgcgc tcgaactgcg gcacctgccc ctcgtccatc agcgagtagg cgatcttctt
     8101 gaccatgccg gcgggcaggc cggtgttgcc gagcgggtag agcttgccct cgaccttgat
     8161 gtgcaccggc gcgccggtgg tgaggaacat gtcggaggcg ttcttctccg tcatcagctt
     8221 gaggaaatag ccgatatcca tcgttcgacc tcgtgttttc ggcggcgtgc taccgttgcg
     8281 gagacgcagt ggccggtcaa gaattccggc cgcgcgaacg cattcgccac ggccccctcc
     8341 catgcgccca agcttctcac aactccgttc gaccctgctg gcagcggttc tcgtttccgc
     8401 gctggccggc tgcgccacgt tgccgccgcc gacctccgag cttgccgccg cccagcaggc
     8461 ggtggcacgc gccggccagg cc
//
LOCUS       DATIQC010000293         4984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_479127, whole genome shotgun sequence.
ACCESSION   DATIQC010000293 DATIQC010000000
VERSION     DATIQC010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4984
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479127"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..583)
                     /locus_tag="VLM17_06240"
     CDS             complement(<1..583)
                     /locus_tag="VLM17_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008576314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HSR65186.1"
                     /translation="MSTDRQLTIVGAGLAGALLATLLARRGWQVEVFERRGDPRVVGY
                     AGGRSINLALAERGLHALRQAEADAAVLDKAVMMRGRMVHPLHGAPQLLRYGRDDSEV
                     IWSVSRGELNILLLDAAEAAGARLHFDRRLERVDFGRRIATFMGDGPHEHAFQALVGA
                     DGAGSSLRAEMARVTDLGERTEGLGHGYKELEIP"
     gene            complement(580..1875)
                     /gene="kynU"
                     /locus_tag="VLM17_06245"
     CDS             complement(580..1875)
                     /gene="kynU"
                     /locus_tag="VLM17_06245"
                     /EC_number="3.7.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030429 - kynureninase activity [Evidence
                     IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HSR65187.1"
                     /translation="MNGPDVPQSDFFNDDYARTQDATDPLRALRDEFLIPRHDGREQS
                     YFCGNSLGLQPKGARAMVGEVLDKWATQAVEGHFLEPAPWMPYHELVRDGLAGVVGAQ
                     PSEVVAMNSLTANLHLMLVSFYRPERERPAILMEAGAFPSDRYALESQVRFHGFDPAT
                     DLIEVQPDGEDGTISMAAIQQAIQTHGPRIATIVWPGVQYRTGQAFDLAEITRLGHAA
                     GAVVGFDLAHAVGNLPLGLHDSGADFAVWCHYKYMNSGPGAVAGCFVHERHARSERPR
                     FAGWWGHDQGSRFRMGPQFAPTPGADGWQLSNPPILGLAPLRASLDLFGRAGMQALRA
                     KSLRLTGHLEALIRTHLADVLQIATPADPSQRGCQLSLRVAGGRARGRALFDYLARQG
                     VIGDWREPDVIRISPAPLYNTHADVLRFARTVAAWRDAP"
     gene            complement(1958..2968)
                     /locus_tag="VLM17_06250"
     CDS             complement(1958..2968)
                     /locus_tag="VLM17_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008435220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR65188.1"
                     /translation="MLKIDVHAHYLPRDWPDLAAKYGDARFPVIHHGEDGRHRIYKDG
                     KFFREIWPKTWDPRIRLEDYARFGVQVQVLSTVPVMFSYWAKANQALALHQALNDHMA
                     EACAGFPRHYAGIGTVPLQSPSLAVRELERCMDQLDLQGVQIGSHINDWNLDAPELFE
                     FFEAASELGAAILVHPWDMMGAESMPKYWMPWLVGMPAELSRAACCLVFGGVLERLPR
                     LRVCLAHGGGSFPYTIGRIEHGFNMRPDLVATDNFRNPREYLSRLYFDSWVADPRALR
                     YLIDTCGASQVMLGTDYPFPLGEQEPGAGIAALGLPDGEQARLYHGTALEWLGVSAAR
                     FA"
     gene            complement(2974..3537)
                     /locus_tag="VLM17_06255"
     CDS             complement(2974..3537)
                     /locus_tag="VLM17_06255"
                     /EC_number="1.13.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007513035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000334 - 3-hydroxyanthranilate
                     3,4-dioxygenase activity [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyanthranilate 3,4-dioxygenase"
                     /protein_id="HSR65189.1"
                     /translation="MLPNPINLQAWIEEHRHLLKPPVGNKCIHDGDYIVMVVGGPNAR
                     TDYHFEEGPELFHQLEGEMVLRIQEDDGSGQLAPRDIPIRAGELFYLPPRVPHSPQRM
                     PGSVGLVVERKRLEHEDDALMWFCINCNHKLYEESFHLVDIEQDFFRVFERFYRDEGL
                     RTCSRCGTLNPRPSRYEMAAGSEADIT"
     gene            complement(3575..4027)
                     /locus_tag="VLM17_06260"
     CDS             complement(3575..4027)
                     /locus_tag="VLM17_06260"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HSR65190.1"
                     /translation="MTGTGNARRLGIEAGAAPRPVGHYPHARRVGNLLFLSGIGPRDP
                     ETNAIPGNELYADGRVRRYDIVAQTHAVFANVRAVLEASGARWEDLVDVTVYLTDMLR
                     DFRLYNEVWAEYFPDVAGAPCRTTVGITALPTPIAIEMKCTAVLPDGR"
     gene            complement(4024..4695)
                     /gene="can"
                     /locus_tag="VLM17_06265"
     CDS             complement(4024..4695)
                     /gene="can"
                     /locus_tag="VLM17_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HSR65191.1"
                     /translation="MSELSELLRNNRDWADQVRREDPDFFLRLSQQQAPKFLWIGCSD
                     SRVPANQIMGLAPGEVFVHRNIANVMVHTDLNCLSVIQFAVDVLKVEHILVVGHYGCG
                     GVHAALTGSRVGLADNWIRHVGDVALKHAALLEDIDGEARQHDRLCELNAIEQAANVC
                     LTTIVQDAWARGQSLSVHGWVYSLLDGRVRELGMDVDALDVLPSAYEHALSRLRGGAH
                     GGRAA"
     gene            complement(4692..>4984)
                     /locus_tag="VLM17_06270"
     CDS             complement(4692..>4984)
                     /locus_tag="VLM17_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008434425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR65192.1"
                     /translation="TLQAFDDEPQALALANACDYGLAASVWTRDLDRAHRLAATLQAG
                     IVWINCWLLRDLRTPFGGMGQSGLGREGGFEAMRFFTEARNVGIAIKEHRPQ"
BASE COUNT          732 a         1702 c         1798 g          752 t
ORIGIN      
        1 gcgggatctc cagctccttg tagccgtggc cgaggccttc ggtgcgctcg ccgaggtcgg
       61 tgacgcgcgc catctccgcg cgcaaggaag agcccgcgcc gtccgcgccg accagtgcct
      121 ggaacgcgtg ctcgtgcggg ccatccccca tgaacgtcgc gatgcggcgg ccgaagtcga
      181 cgcgctcgag ccggcggtcg aaatgcaggc gcgcgcccgc ggcctcggcc gcgtcgagca
      241 gcaggatgtt gagttcgccg cggctgaccg accagatcac ctcgctgtcg tcgcgcccgt
      301 aacgcagcag ctgcggcgcg ccgtgcagcg gatgcaccat gcgcccgcgc atcatcaccg
      361 ccttgtcgag caccgccgcg tcggcctcgg cctggcgcag cgcgtgcagc ccgcgctcgg
      421 ccagtgcgag gttgatcgag cgcccgcccg cgtagccgac cacgcgcgga tcgccgcgcc
      481 gttcgaacac ctcgacctgc cagccgcggc gggcgagcag ggtggcgagc agcgcaccgg
      541 cgaggccggc gccgacgatg gtgagttgcc tgtccgtgct catggggcat cccgccaggc
      601 ggcgacggtg cgcgcgaagc gcagcacgtc ggcgtgggtg ttgtagagcg gcgcgggcga
      661 gatgcggatg acgtcgggct cgcgccagtc gccgatgacg ccctgtcgcg cgaggtagtc
      721 gaacagcgcg cggccacgcg cgcggccgcc ggcgacgcgc agcgacagct ggcagccgcg
      781 ctgcgacgga tcggccggcg tggcgatctg cagcacgtcg gcgaggtggg tgcggatcag
      841 cgcttcgagg tggccggtca ggcgcagcga cttcgcgcgc agggcctgca tgccggcgcg
      901 gccgaacagg tcgagcgagg cgcgcagcgg cgcgaggccg aggatcggag gattgctgag
      961 ctgccagccg tcggcgccgg gcgtcggcgc gaactgcggg cccatgcgga aacgcgatcc
     1021 ctggtcatgg ccccaccagc cggcgaagcg cgggcgttcg ctgcgcgcgt ggcgctcgtg
     1081 cacgaagcag ccggcgacgg cgcccggccc ggaattcatg tacttgtagt ggcaccagac
     1141 ggcgaagtcg gcgccgctgt cgtgcagtcc gagcggcagg ttgccgacgg catgggcgag
     1201 atcgaagccg acaaccgcgc cggccgcgtg gccgagccgg gtgatctccg cgaggtcgaa
     1261 ggcctggccg gtgcggtact gcacgcccgg ccagacgatc gtcgcgatgc gcggcccatg
     1321 cgtctggatc gcctgctgga tcgccgccat cgagatcgtc ccgtcctcgc cgtccggctg
     1381 cacctcgatc aggtcggtgg ccgggtcgaa gccgtggaaa cggacctgcg attccagcgc
     1441 gtaccggtcg gaggggaacg cgccggcctc catcaggatg gccgggcgct cgcgttcggg
     1501 ccgatagaag ctgaccagca tcaggtgcag gttggcggtc agcgagttca tcgcgaccac
     1561 ctcggacggc tgcgcgccga caacgccggc aaggccgtcg cgcaccagct cgtggtaggg
     1621 catccacggc gcgggctcga ggaaatgccc ttcgaccgcc tgcgtcgccc acttgtcgag
     1681 cacttccccg accatcgcgc gcgcgccctt cggctgcagc ccgagcgaat tgccgcagaa
     1741 gtaggactgc tcgcgaccgt cgtggcgcgg gatgaggaac tcgtcgcgca aggcgcgcag
     1801 tggatcggtc gcgtcctgcg tgcgtgcgta gtcgtcgttg aaaaaatcgc tctggggcac
     1861 gtcgggtccg ttcatggtgc gacaggctcg ccacgaacgg acgatgccgt cgcggattgc
     1921 cgttcgtcct gagcctgtcg aaggacgtac ggcgcggtca cgcaaatctc gccgccgaca
     1981 cccccagcca ttcgagcgcc gtgccgtggt acagccgcgc ctgttcgccg tccggcaatc
     2041 cgagcgcggc gatccccgcc cccggttcct gctcgccgag cgggaaggga tagtcggtgc
     2101 cgagcatcac ctgcgaagcg ccgcaggtgt cgatcaggta acgcagcgcg cgcgggtcgg
     2161 ccacccagga atcgaagtac agccgggaca ggtattcgcg cgggttgcgg aagttgtcgg
     2221 tggcgacgag gtccgggcgc atgttgaagc cgtgctcgat gcggccgatg gtgtagggga
     2281 agctgccgcc gccgtgggcg aggcacacgc gcagcctggg cagccgctcg agcacgccgc
     2341 cgaacaccag gcagcacgcg gcgcgcgaca gctcggcggg catgcccacc agccatggca
     2401 tccagtactt cggcatcgac tcggcgccca tcatgtccca cgggtgcacg aggatcgccg
     2461 cgcccagttc gctcgccgcc tcgaagaact cgaacagctc cggcgcgtcc aggttccagt
     2521 cgttgatgtg gctgccgatc tgcacgccct gcaggtcgag ctggtccatg cagcgttcca
     2581 gctcgcgcac ggccagcgac ggcgactgca gcggcaccgt gccgatgccg gcgtaatggc
     2641 gcgggaaccc ggcgcaggcc tcggccatgt ggtcgttaag cgcctggtgc agcgccagcg
     2701 cctggttggc cttcgcccag tagctgaaca tcaccggcac cgtgctgagc acctgcacct
     2761 gcacgccgaa gcgcgcgtag tcctcgaggc ggatgcgcgg gtcccaggtc ttcggccaga
     2821 tctcgcggaa gaacttgccg tccttgtaga tgcggtgccg cccgtcctcg ccgtggtgga
     2881 tgaccggaaa acgcgcgtcg ccgtacttgg cggcgaggtc cggccagtcg cggggcaggt
     2941 aatgggcgtg gacgtcgatc ttgagcatgg cggtcaggtg atgtcggcct cggaacctgc
     3001 cgccatttcg tagcgcgacg gccgcgggtt cagggtgccg caccggctgc aggtgcgcag
     3061 tccttcgtcg cggtagaagc gttcgaacac gcggaagaaa tcctgttcga tgtcgaccag
     3121 gtggaaggat tcctcgtaca gcttgtggtt gcagttgatg cagaaccaca tcagcgcgtc
     3181 gtcctcgtgt tccaggcgct tgcgctcgac gaccagcccg accgatccgg gcatgcgctg
     3241 gggcgaatgc ggcacccgcg gcggcaggta gaaaagttcg ccggcccgga tcgggatgtc
     3301 gcgcggcgca agctgtccgg agccgtcgtc ttcctggatg cgcagcacca tctcgccttc
     3361 cagctggtgg aacagctccg ggccttcctc gaagtggtag tcggtccgcg cgttcgggcc
     3421 gccgacgacc atcacgatgt agtcgccgtc gtggatgcac ttgttgccga ccggcggctt
     3481 gagcaggtgg cggtgttcct cgatccaggc ctgcaggttg atcgggttgg gcagcatctg
     3541 ggcctcctcc gccgccgcgc gggcggcgct cgcttcacct gccgtcgggc aggacggcgg
     3601 tgcacttcat ttcgatggcg atcggcgtcg gcagcgcggt gatgccgacc gtcgtccggc
     3661 atggcgcgcc cgccacgtcg gggaagtatt ccgcccagac ctcgttgtac aggcggaagt
     3721 cgcgcagcat gtcggtgagg tagacggtga cgtcgaccag gtcttcccag cgcgcgccgc
     3781 ttgcttccag taccgcgcgc acgttggcga acaccgcgtg ggtctgggcg acgatgtcgt
     3841 aacgacgcac gcggccgtcg gcgtagagct cgttgccggg aatggcgttc gtctccgggt
     3901 cgcgcggccc gatcccggac aggaacagca ggttgccgac ccggcgcgca tgcgggtaat
     3961 ggccgaccgg ccgcggtgcg gcgcccgcct cgatgcccag gcgccgcgcg ttgccggtcc
     4021 cggtcatgcc gcccgccccc cgtgggcgcc gccgcgcagc cgcgacagcg cgtgctcgta
     4081 ggccgacggc aggacgtcga gcgcatcgac atccatgccc agttcgcgca cgcgcccgtc
     4141 gagcaggctg tacacccagc catggaccga aagcgactgc ccgcgcgccc atgcgtcctg
     4201 cacgatggtc gtgaggcaga cgttcgcggc ctgctcgatc gcgttgagct cgcacaggcg
     4261 gtcgtgctgg cgcgcctccc catcgatgtc ctccagcagc gcggcgtgct tgagcgcgac
     4321 gtcgccgacg tggcggatcc agttgtcggc caggcccacg cgcgagccgg tcagcgcggc
     4381 gtgcacgccg ccgcacccgt agtgcccgac cacgaggatg tgctcgacct tcagcacgtc
     4441 caccgcgaac tggatcaccg agaggcagtt gaggtcggtg tgcaccatca cgttggcgat
     4501 gttgcggtgg acgaacacct cgcccggcgc caggcccatg atctggttgg ccggcacgcg
     4561 cgagtcggag cagccgatcc acaggaactt cggcgcctgc tgttgcgaca ggcgcaggaa
     4621 gaaatcgggg tcctcgcgcc ggacctgatc ggcccagtcg cggttgttgc gcagcagttc
     4681 gctcagttcg ctcattgcgg gcgatgctcc ttgatggcga tgccgacgtt gcgcgcctcg
     4741 gtgaagaagc gcatggcctc gaagccgcct tcgcggccca gcccggactg acccatgccg
     4801 ccgaatggcg tgcgcaggtc gcgcagcagc cagcagttga tccagacgat gcccgcctgc
     4861 agcgtcgcgg cgaggcggtg cgcgcggtcc aggtcgcgcg tccacaccga ggcggcgaga
     4921 ccgtagtcgc aggcgttggc gagcgcgagc gcctgcggct cgtcatcgaa ggcctgcagc
     4981 gtcg
//
LOCUS       DATIQC010000294         3480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_54891, whole genome shotgun sequence.
ACCESSION   DATIQC010000294 DATIQC010000000
VERSION     DATIQC010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3480
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54891"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1112
                     /locus_tag="VLM17_06275"
     CDS             <1..1112
                     /locus_tag="VLM17_06275"
                     /inference="COORDINATES: protein motif:HMM:NF019982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR65193.1"
                     /translation="TGKSNPLDCKDASAQEDDDTDAGDEAAQARAQAARCLAQLEGRA
                     DLRFYTTSDAIRDLDAVRAALGVEQIDLVGISYGTRVAQQYARAYPRHTRALVLDSVA
                     PNTLYLGNEFAQNLEQALDLQFGQCGKVPACAQALGDPRSRLDALMARLRSDPPRVRY
                     RDASTGQWREDTLRPGHVAGLMRLFAYSPLASSVLPLQLKEASEGRYDTLMAMAHMLR
                     GRMAEQMAMGMQLSVVCSEDAAGFKADPRADGSLLGNAFATELGAQCALWPKGAMPAG
                     FHEPLQGEVPAMVLEGEFDPVTPPRYGKDVVRALPNARLFVLRGQGHNVIGAGCMPKL
                     VAQFLDTRDAKALDAGCLDTLPYTPPFTSFNGWEP"
     gene            1136..1891
                     /locus_tag="VLM17_06280"
     CDS             1136..1891
                     /locus_tag="VLM17_06280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR65194.1"
                     /translation="MITAEHLRKTFPGKGKDKARVVAVDDVGFTARDGEITGLLGPNG
                     AGKTTTLRMLYTLMQPESGRVLVDGVDVARDAGAARRALGVLPDARGVYKRLTARENI
                     RYFGELHGLAPALVEERTRRLADALQMQDFLDRQTEGFSQGQRTKTAIARALVHDPRN
                     VILDEPTNGLDVMTTRGLRDFLRQLRGEGRCVIFSSHIMQEVAALCDRIVVIAHGRVV
                     AQGSADELRSQTGEGNLEDAFVRLIGSEEGLHA"
     gene            1888..3072
                     /locus_tag="VLM17_06285"
     CDS             1888..3072
                     /locus_tag="VLM17_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65195.1"
                     /translation="MTPSTMKTVLVVWLKELRELVRDRRTLMLALVLSPLLTPILVIG
                     LGTLAESRAKSQIEKPMSVVIVGAERAPNLVAWLGGVGITRKAFDGDPDAAIRDQDED
                     VYLRIEPKFAEHWREGTPALVEIVHDSTREDSKIPVKRVEAAIDLYRQQMGALRLLAR
                     GISPSVAAPVTASHTDLSTPEARKGLALSFLPYLLILSAFLGTVQLVVDTTAGERERQ
                     SLEPLLVTPARRGAIVSGKIAAACAVGVAALLLTMLSFKLGAQLSPGIGRQMDVGAGA
                     IARMLFVLLPMVFIGASLLTFIAAGAKSVKEAQSYMGVLVLLPMIPTLILMVSPVKNQ
                     LWMFAVPFLAQNQMLLKVIRSEAIDARTWTVYFAAGLGLAALLWFAATRRYHQEKLAV
                     SG"
     gene            complement(3139..>3480)
                     /locus_tag="VLM17_06290"
     CDS             complement(3139..>3480)
                     /locus_tag="VLM17_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HSR65196.1"
                     /translation="AAEQRAAQQRAAQASAPASQPSAPATAASTDLRAISTPAPKYPP
                     EAFREGTAGEVQVEFTVAPDGSVSNARVVRANPPRVFDREAIAAVKRWRFQPVGAPVT
                     TRRTISFNPGQ"
BASE COUNT          501 a         1237 c         1257 g          485 t
ORIGIN      
        1 gcaccggcaa gtccaacccg ctcgactgca aggacgcgtc cgcgcaggag gacgacgaca
       61 ccgacgccgg cgacgaggcc gcgcaggcac gcgcccaggc cgcgcgctgc ctggcgcaac
      121 tcgaaggcag ggccgacctg cgcttctaca cgaccagcga cgcgatccgc gacctcgacg
      181 cggtgcgcgc ggcgctcggc gtggagcaga tcgacctcgt cggcatctcc tacggcaccc
      241 gcgtcgccca gcagtacgcg cgcgcctatc cgcggcacac ccgcgcgctg gtgctcgact
      301 cggtcgcgcc gaacacgctc tacctcggca acgagttcgc gcagaacctc gagcaggcac
      361 tggacctgca gttcggccag tgcggcaagg tgccggcctg cgcgcaggcg ctcggcgacc
      421 cgcgctcgcg cctggatgcg ctgatggcca ggctgcgcag cgacccgccg cgcgtgcgct
      481 atcgcgatgc cagcaccggc cagtggcgcg aggacacgct ccggcccggg cacgtcgccg
      541 ggctgatgcg gctgttcgcc tactcgccgc tggcctcctc ggtgctgccg ctgcagctga
      601 aggaagcctc cgaaggccgc tacgacacgc tgatggcgat ggcgcacatg ctgcgcggca
      661 ggatggccga gcagatggcg atgggcatgc agctgtcggt ggtgtgcagc gaggatgccg
      721 ccggcttcaa ggccgatccg cgcgccgacg gcagcctgct cggcaatgcc ttcgccaccg
      781 aactcggcgc gcagtgcgcg ctgtggccga agggcgcgat gccggccggc ttccacgagc
      841 cgctgcaggg cgaggtgccg gcgatggtgc tggaaggcga gttcgacccg gtgacgccgc
      901 cgcgctacgg caaggacgtg gtgcgcgcgc tgccgaacgc gcgcctgttc gtgctgcgcg
      961 ggcagggcca caacgtgatc ggcgccggct gcatgcccaa gctggtcgcg cagttcctcg
     1021 acacccgcga tgcgaaggcc ctcgacgccg ggtgcctcga cacgttgccc tacacgccgc
     1081 cgttcaccag cttcaacggc tgggaaccct gagcgaacga cacaggaccc ctgaaatgat
     1141 cacggcagaa cacctgcgca agaccttccc cggcaagggc aaggacaagg cgcgcgtggt
     1201 ggcggtcgac gatgtcggct tcaccgcccg cgacggcgaa atcaccggcc tgctcggccc
     1261 caacggcgcc ggcaagacca ccaccctgcg catgctctac acgctgatgc agcccgagag
     1321 cgggcgcgtt ctggtggacg gcgtcgacgt cgcccgcgac gccggggcgg cgcggcgcgc
     1381 gctcggcgtg ctgcccgacg cgcgcggcgt gtacaagcgc ctgaccgcgc gcgagaacat
     1441 ccgctacttc ggcgaactgc acgggctggc gccggcgctg gtcgaggagc gcacccggcg
     1501 cctggccgat gcgttgcaga tgcaggattt cctcgaccgc cagaccgagg ggttctcgca
     1561 gggccagcgc accaagaccg cgatcgcgcg cgcgctggtg cacgacccgc gcaacgtcat
     1621 cctcgacgag ccgaccaacg gcctggacgt gatgaccacg cgcggcctgc gcgacttcct
     1681 gcgccagctg cgcggcgagg ggcgctgcgt gatcttctcc agccacatca tgcaggaggt
     1741 cgccgcgctg tgtgaccgca tcgtggtgat cgcgcacggc cgggtggtcg cgcagggcag
     1801 cgccgacgag ctgcgctcgc agaccggcga ggggaacctg gaggacgcgt tcgtccgcct
     1861 gatcggatcg gaagagggac tgcacgcatg acgccgtcga cgatgaagac cgtgctggtc
     1921 gtgtggctca aggaactgcg cgagctggtg cgcgaccgcc gcacgctgat gctggcgctg
     1981 gtgctcagcc cgctgctgac gccgatcctg gtgatcggcc tcggcacgct cgccgagagc
     2041 cgcgcaaaga gccagatcga gaagccgatg agcgtggtga tcgtcggcgc cgagcgcgcg
     2101 cccaacctgg tcgcctggct cggcggcgtg ggcatcaccc gcaaggcctt cgacggcgac
     2161 ccggacgcgg cgatccgcga ccaggacgag gacgtgtacc tgcgcatcga gccgaagttc
     2221 gccgagcact ggcgcgaggg cacgccggcg ctggtggaga tcgtgcacga ctccacccgc
     2281 gaggactcga agatcccggt caagcgggtg gaggcggcga tcgacctcta ccgccagcag
     2341 atgggggcgt tgcgcctgct cgcgcgcggg atcagcccgt cggtggcggc gccggtgacc
     2401 gcctcccaca ccgacctgtc cacgcccgag gcgcgcaagg gcctggcgct gtcgttcctg
     2461 ccctacctgc tgatcctcag cgccttcctc ggcaccgtgc agctggtggt cgacaccacc
     2521 gccggcgaac gcgagcgcca gtcgctcgag ccgctgctgg tgaccccggc ccggcgcggc
     2581 gccatcgtca gcggcaagat cgccgccgcc tgcgcggtgg gcgtggccgc gctgctgttg
     2641 acgatgcttt cgttcaagct cggcgcgcag ctgtcgccgg gcatcggccg gcagatggac
     2701 gtcggcgccg gcgccatcgc caggatgctg ttcgtgctgc tgccgatggt gttcatcggt
     2761 gcctcgctgc tgaccttcat cgccgccggc gcgaagtcgg tgaaggaggc gcagagctac
     2821 atgggcgtgc tggtcctgct gccgatgatc ccgacgctga tcctgatggt cagcccggtg
     2881 aagaaccagc tgtggatgtt cgcggtgccg ttcctggccc agaaccagat gctgctgaag
     2941 gtgatccgca gcgaagcgat cgacgcgcgg acctggacgg tgtatttcgc ggcgggcctg
     3001 ggcctggccg cgctgctgtg gttcgcggcc acccggcgct accaccagga gaagctggcg
     3061 gtctccggct gagcgtccac cgcggcgccg acgaaaaagc ccggctcgcg ccgggctttt
     3121 tcgtttccgc gtcccgcctt actggccggg gttgaagctg atcgtgcggc gggtggtgac
     3181 cggcgcgccc accggctgga agcgccagcg cttgaccgcg gcgatcgcct cgcggtcgaa
     3241 cacccgcggc gggttggcgc gcaccacgcg cgcgttcgac accgagccgt ccggggccac
     3301 ggtgaactcc acctgcactt cgcccgcggt gccctcgcgg aaggcttccg gcgggtactt
     3361 cggcgccggc gtgctgatcg cgcgcaggtc ggtcgaggcg gcggtggccg gtgcggacgg
     3421 ctggctcgcc ggcgcggagg cctgcgccgc tcgctgctgc gcggcgcgct gctcggcggc
//
LOCUS       DATIQC010000295         4685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_585355, whole genome shotgun sequence.
ACCESSION   DATIQC010000295 DATIQC010000000
VERSION     DATIQC010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4685
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585355"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VLM17_06295"
     CDS             <1..300
                     /locus_tag="VLM17_06295"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HSR65197.1"
                     /translation="DGHTASLFPGMPDLDRALASRESYVAVNAGGCPGAGKWPLRITS
                     TPAGLAPADTRILLLRGDDKRAVFERALAGHDPRELPVRIAFLLPGAPLDVYWCR"
     gene            complement(285..545)
                     /locus_tag="VLM17_06300"
     CDS             complement(285..545)
                     /locus_tag="VLM17_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HSR65198.1"
                     /translation="MRALLEQAFAPTTLDLVDDSHRHAGHAGARDGRGHFGVDIVSEA
                     FAGLAPLARHRAVYAALGDMMATDIHALTIRARTPAEAQRHQ"
     gene            complement(581..880)
                     /locus_tag="VLM17_06305"
     CDS             complement(581..880)
                     /locus_tag="VLM17_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014503597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSR65199.1"
                     /translation="MWYAIEGYDGADVLALRTAARAEHLARLNALKDQGRLLLAGPCP
                     AIDAEDPGPAGFTGSIVIAEFESLAAARAWAQADPYIAAGVYQRVEVRPFKHVLP"
     gene            1237..2154
                     /locus_tag="VLM17_06310"
     CDS             1237..2154
                     /locus_tag="VLM17_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016904542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HSR65200.1"
                     /translation="MTDTAPDAPSATVAPAKPQQQEMPLAVVLGQPVLQIPQDLYIPP
                     DALEVILDAFEGPLDLLLYLIRRQNLDILDIPVAEITRQYVDYIQAMHEMRFELAAEY
                     LVMAAILAEIKSRMLLPRPPNAEGLEEDPRADLVRRLQEYERFKQAAEDIDALPRVGR
                     DTTPVSAFVPDRAVVKLPPPVDLREMLLALHDVLKRAELFTQHAIKRDALSVRQRMGE
                     LLERLGDGAFHRFESLFEAREGRLGVVVTFLGLLTLAKEQLVEIVQEAPLAPIYVKSL
                     AVGEGAPESLELSSEFDEDQPAANDDPSR"
     gene            2312..2965
                     /gene="scpB"
                     /locus_tag="VLM17_06315"
                     /pseudo
     CDS             2312..2965
                     /gene="scpB"
                     /locus_tag="VLM17_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017165259.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
     gene            3126..>4685
                     /locus_tag="VLM17_06320"
     CDS             3126..>4685
                     /locus_tag="VLM17_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003471770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSR65201.1"
                     /translation="MSEQERRKLSLKRGEEKTPAPRLEERLHKVLAQAGLGSRRALEQ
                     RIADGLVKVNGETATVGMSVTGGDKIELDGRTFVATALTEPARVLMYNKPEGEVTTRE
                     DPEGRPTVFEALPMLKGARWIAIGRLDINTTGLLLLTTDGELANALMHPSHEVEREYV
                     CRVRAPEGEDVVSEKTVDRLGRGVALDDGPAKFDEIERIGGTDSHDWFRVVVKEGRNR
                     EVRRLWESQGCQVSRLKRTRYGDVALPQPLLRGQSQELPPERVEALRKSLGLEDGAPS
                     ALTLQPVIGQRKAAKSTVHIGGERAHGYVGGHNTADEGRELRRFDHVRDDRRGRGGKK
                     HGGLTVSGEAAAKQLDRKFKIKGPRQPGQKVRRGQPQGGNENPAAFRTWYVPDGVDTG
                     PSGHRNPDGARARKPYGSKGGHPAGGRPGGGRTGGEQPRGFGGEQRGPRGGGGHGQRA
                     PRPYGHPDGAPNFPSDHANPGFNPYGERPRSPRPAGGPRPAGGPRPAGGPRPAGGPRP
                     AGGPRPAGGNRP"
BASE COUNT          704 a         1733 c         1670 g          578 t
ORIGIN      
        1 gacggccaca ccgcgtcgct gttccccggc atgcccgacc tcgaccgcgc gctcgccagc
       61 cgcgagtcct acgtcgcggt gaatgccggc ggctgcccgg gcgcgggcaa gtggccgctg
      121 cgcatcacct ccacgcccgc cggcctcgcc ccggcggaca cgcgcatcct cctgctgcgc
      181 ggcgacgaca agcgcgcggt gttcgagcgt gcgctcgccg gccacgatcc gcgcgagctg
      241 ccggtccgca tcgccttcct gctgcccggc gcgccgctgg acgtctactg gtgccgctga
      301 gcctcggcgg gcgtgcgggc gcggatcgtc agtgcatgga tgtcggtcgc catcatgtcg
      361 ccgagcgcgg catagaccgc gcggtgccgc gccagcggcg ccagccccgc gaacgcctcg
      421 ctgacgatgt cgaccccgaa gtggccgcgg ccgtcgcgcg cgccggcatg cccggcgtgc
      481 ctgtggctgt cgtcgaccag gtcgagcgtg gtgggcgcga aggcctgctc cagcagcgcg
      541 cgcatgcgcg ccatgcgttg cggtccggcg gcctgggcgc tcacggcaac acgtgcttga
      601 acgggcgcac ctcgacccgc tggtagacgc cggcggcgat gtagggatcg gcctgtgccc
      661 aggcgcgcgc cgcggccagg gattcgaatt cggcgatcac gatgctgccg gtgaagccgg
      721 ccgggcccgg atcctccgcg tcgatcgccg ggcacggccc cgccagcagc agccggccct
      781 ggtccttcag cgcattcagg cgggcgaggt gctccgcgcg cgcggccgtc cgtagcgcca
      841 gcacgtcggc gccgtcgtag ccttcgatcg cataccacat gggccatcct cccggcgcgc
      901 ggcgcctttc gatgccggcc ccgtcgcggc cggctggcgc ccgcgcggcg tcatggtgcg
      961 ggcgaagggc gcagagtcta gccgcaacgt gctggacagt ccccggacca gcccgtaccc
     1021 tagcttccag ctcgaggcca gcggcccctg cgcgaggcgc cccacggccc gctgcctgcc
     1081 ccgaggaccc tttaggttcg ttccgcaccc ggcgatgcgt cgcatggcgc aggggatccg
     1141 ctgcctgcac cgccgcccga ggtttgcccg ttgcagccag cgcgccccgg cgcgcgcact
     1201 ttgcgagacc gcgtggcccg gaggggccgc ccacgcatga cagacaccgc gcccgacgcg
     1261 ccatccgcca ccgtcgcacc ggccaagccg cagcagcagg aaatgccgct ggcggtggtg
     1321 ctcggccagc cggtgctgca gataccgcag gacctgtaca tcccgccgga cgcgctcgag
     1381 gtcatcctcg acgccttcga ggggccgctg gacctgctgc tgtacctgat ccgccggcag
     1441 aacctggaca tcctcgacat tccggtcgcg gagatcaccc gccagtacgt cgactacatc
     1501 caggccatgc acgagatgcg cttcgagctg gccgccgaat acctggtgat ggccgcgatc
     1561 ctggccgaga tcaagtcgcg catgctgctg ccgcgaccgc cgaacgccga ggggctggag
     1621 gaggatccgc gcgccgacct cgtgcgccgc ctgcaggagt acgagcgctt caagcaggcc
     1681 gccgaggaca tcgacgccct gccccgcgtc ggccgcgaca ccacgccggt gtcggccttc
     1741 gtgcccgacc gggcggtggt gaagctgccg ccgccggtgg acctgcgcga gatgctgctg
     1801 gccctgcacg acgtgctcaa gcgcgccgag ctgttcaccc agcacgcgat caagcgcgat
     1861 gcgctgagcg tgcgccagcg catgggcgag ctgctggagc gcctgggcga cggcgccttc
     1921 caccgcttcg aaagcctgtt cgaggcgcgc gagggcaggc tcggcgtggt cgtgaccttc
     1981 ctcggcctgc tgacgctggc caaggagcag ctggtggaga tcgtgcagga ggcgccgctg
     2041 gcgccgatct acgtgaagtc gctggcggtg ggcgaaggcg cgccggaatc gctggagctg
     2101 tccagcgaat tcgacgagga ccagccggcg gcgaacgacg atccgtcccg atgacgggaa
     2161 tggaggcggg gatccccttg gcttctgccc cgcccggccg cgcccacctg gttgcccacg
     2221 acgcaagtcg ccagtagaag acgttccccg tcgagcccgc acccgcggga ttgacggaca
     2281 cccgcccaat tcccgattcc gctatcgccc gatggaccaa caactcgtca accgcatcgt
     2341 cgaagccgcc ctgctcgcgg ccaaccagcc gctgacgctg gcgcagctgc atgcgctgct
     2401 gtccaacaac gaactgccgc tggacgagca ggcgccggaa ggcagcatcg aacgcgcgct
     2461 ggaactcctg cgcgaggcct gcaccgaccg cggcgtggaa ctggtcgagg tcgcgtccgg
     2521 cttccgctac caggtcaggg ccgacgtgca cgcctgggtc gcgcggctgt ggaccgagcg
     2581 caagaccaag tacacccgcg ccacgctgga gaccctggcg ctgatcgcct accgacagcc
     2641 gatcacccgc ggcgagatcg agcaggtgcg cggcgtggcg gtcagcagca acatcatcca
     2701 ggcgctggaa gagcgcgaat ggatccgcgt cgtcggccac cgcgacgtgc ccggcaagcc
     2761 ggcgctgtac ggcaccaccc ggggcttcct cgactacttc ggcctcaagc gcctggacga
     2821 gctgccgccg ctgtcggagt tgaaggacat cggcgagctg gagccgcagc tgcagttcga
     2881 cggcgagccg ccgctggcgg tcggcggcat cgccgacggc gcaggcgcgg cggacgagga
     2941 cgcgcagcgg cccggcgcgg gtggaacacc ggacgaggcc ggcgcggcgg atgcccacgc
     3001 cggcgcgacg ctggccgacg acgcgatggc cgacgacgcg gccctcgacc aacccaacga
     3061 caacgacccc acggatgacg acgcccccgc tctgatcgaa gagtcggcct cgtcggagca
     3121 gacccatgag tgagcaggaa cgccgcaagc tgtcgctgaa gcgcggcgaa gagaagaccc
     3181 ccgcgccgcg cctcgaggag cgcctgcaca aggtgctggc ccaggccgga ctcggctcgc
     3241 gccgcgcgct cgaacagcgc atcgccgatg gcctggtcaa ggtcaacggc gagaccgcga
     3301 ccgtcggcat gagcgtgacc ggcggcgaca agatcgaact cgacggccgc accttcgtcg
     3361 ccaccgcgct caccgagccg gcgcgcgtgc tgatgtacaa caagcccgaa ggcgaagtga
     3421 ccacgcgcga ggatccggaa ggacgcccga ccgtgttcga ggcgctgccg atgctcaagg
     3481 gcgcgcgctg gatcgcgatc ggccgcctcg acatcaacac caccggcctg ctgctgctca
     3541 ccacggatgg cgagctcgcc aatgcgctga tgcatccctc gcacgaggtc gagcgcgagt
     3601 acgtctgccg cgtgcgcgcg ccggaaggcg aggacgtcgt gtcggagaag accgtcgacc
     3661 ggctcggccg cggtgtcgcg ctggacgacg gcccggcgaa gttcgacgag atcgagcgca
     3721 tcggcggcac cgattcgcac gactggttcc gcgtcgtcgt caaggaagga cgcaaccgtg
     3781 aggtgcgtcg tttgtgggag tcgcagggct gccaggtcag ccgcctgaag cgcacccgat
     3841 acggcgacgt cgcgctgccg cagccgctgc tgcgcgggca gtcccaggaa ctgccgcccg
     3901 agcgtgtcga ggcgctgcgc aagtcgctcg gcctggagga cggcgcgccg tcggcgctga
     3961 cgctgcagcc ggtcatcggc cagcgcaagg cggccaagtc gaccgtgcac atcggcggcg
     4021 agcgcgcgca cggttacgtc ggcggccaca acaccgccga cgaagggcgc gaactgcgcc
     4081 gcttcgacca cgtgcgcgac gaccgtcgcg gacgcggcgg caagaagcac ggcggcctca
     4141 ccgtgagcgg ggaagcggct gccaagcagc tcgaccgcaa gttcaagatc aagggcccgc
     4201 gccagccggg acagaaggtc cgccgcggcc agccgcaggg cggcaacgag aaccccgcgg
     4261 cattccgcac ctggtacgtg ccggacggcg tcgacaccgg gccgagcggc catcgcaatc
     4321 ccgacggcgc gcgcgcgcgc aagccgtacg gcagcaaggg cggccatccg gcgggcggtc
     4381 gcccgggcgg cggtcgcacc ggcggcgagc agccgcgggg cttcggtggc gaacaacgcg
     4441 gtccgcgtgg cggcggtgga cacggccagc gcgcgccgcg tccctatggg cacccggatg
     4501 gcgcgccgaa cttcccgtcc gaccacgcca acccgggctt caatccgtac ggcgagcgtc
     4561 cgcgcagccc gcgcccggcc ggtggcccgc gccctgccgg cggcccgcgt cctgccggtg
     4621 gcccgcgtcc tgccggtggc ccgcgccctg cgggtggccc gcgccctgcc ggtggcaatc
     4681 ggccg
//
LOCUS       DATIQC010000296         4167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_691223, whole genome shotgun sequence.
ACCESSION   DATIQC010000296 DATIQC010000000
VERSION     DATIQC010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691223"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VLM17_06325"
     CDS             <1..311
                     /locus_tag="VLM17_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017915806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65202.1"
                     /translation="IGELPSLGGETQTLLFRVAQEALNNAARHARAQSVLLRLVADGA
                     ELQLQVIDDGTGFDPALARGSGLGGMRERLRLHGGRLELRSAPGQGTRLRAVVPLAEP
                     "
     gene            376..1011
                     /locus_tag="VLM17_06330"
     CDS             376..1011
                     /locus_tag="VLM17_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR65203.1"
                     /translation="MRVLIADDHTMVRESLVSVLQAAGDVQVVAQAADGIEAIELALQ
                     TRPDVVVADLSMPRLNGLEVVRRLREALPHTRVLVLTMHGEDEYVLQAVRAGASGYLV
                     KDSAASELLSALRSLHAGRGHFGPRAAKALAEQLHRPERPLDDPYGRLTAREREVFHL
                     IAEGRTTKDIAQRLGISAKTAENHRGRVLDKLGVRNTAELVRYALRKGLVE"
     gene            1075..1539
                     /locus_tag="VLM17_06335"
     CDS             1075..1539
                     /locus_tag="VLM17_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006448491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LEA type 2 family protein"
                     /protein_id="HSR65204.1"
                     /translation="MKRIAVVLTCILLVACSSGPVRRVSEPAANIQQLTVRADGSWAV
                     DLRIDNFSSVPMRFDAVSLELGVGGEDAGTLRGQPVLTIGPEAADVASLTLAPSGAAR
                     IAVADALASGRNLGYTLRGTLTAAAENGRPRAYDIDLKNALSPVPGLTGVLR"
     gene            complement(1544..2443)
                     /gene="folP"
                     /locus_tag="VLM17_06340"
     CDS             complement(1544..2443)
                     /gene="folP"
                     /locus_tag="VLM17_06340"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006453304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HSR65205.1"
                     /translation="MFDIAPQLDCAGRLLRLDRPRVLGIVNVTPDSFSDGGEHATADA
                     AVAHGLRLAEAGADALDVGGESTRPGAADVPLEEELRRVLPVIERLAKETPLPISIDT
                     SRPEVMRAAVAAGAGMVNDVYALRRDGALDAAASLGVPVVLMHMQGEPRSMQDAPHYD
                     DVVAEVHRFLAERIFAAEMAGIEKRRIVVDPGFGFGKTLQHNLALLARLDRFTDLGVP
                     VLAGLSRKKSIGELTGRLDPHERVHGSVAAHLIAAQRGALLLRVHDVAATVDALKVWE
                     AVAAQPLPRSRPETPAIRWPDDE"
     gene            complement(2513..4117)
                     /locus_tag="VLM17_06345"
     CDS             complement(2513..4117)
                     /locus_tag="VLM17_06345"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR65206.1"
                     /translation="MRDWTASLRQGWAEFRRRRVFRVAGAYLVAGWILVQLGSATFEP
                     LGLPAWSMRLLLVLLAVGFLLACTLAWTYDIGARGIERTAPANATEPPPFPPAPEASV
                     AILPFADLSEAHDQDYFCDGLAEEILNALTRVRGLRVASRTSSFRFREGNTDAREIGR
                     ALSVAAIMEGSVRKSGERVRVTAQLIDAGNGYHLWSENFDRRLEDVFAIQEEIARNVV
                     EALRVSLRTPDALDLQRYAPRDMRAYDFYLRGRRLEGAKDRIKWEASAQMYRRALALD
                     PDYAQAHAGLADVLCELMLWRFARPADVLDEALAASRRALELALELAEAHVAHAHTLA
                     FSGDDEAAAAEFTRAIELNPDLYEAHYYFARHCFARGQFARALDLFEAAHRVHPDEFQ
                     ALMIGVGAAEALGDAARADDMARRGVAASLHCIELDPENARAHYGASALLQRLGEDAA
                     AKEHAEMALHLRPNDYDTLYNCACYFALAGDSGRALDLLERAVATGQGFRDWIEHDHD
                     LDSLRGLPRFRRIFARLEPRDAPAPP"
BASE COUNT          569 a         1493 c         1550 g          555 t
ORIGIN      
        1 agatcggcga actgccgtcg ctcggcgggg aaacccagac cctgctgttc cgcgtcgccc
       61 aggaagcgct caacaacgcg gcccgccatg cgcgcgcgca gagcgtgctg ctccgcctgg
      121 tcgcggacgg cgcggagctg cagctgcagg tgatcgacga cggcaccggc ttcgacccgg
      181 ccctggcgcg cggcagcggg ctcggaggca tgcgcgaacg cctgcgcctg catggcggcc
      241 ggctcgagct gcgttcggcg cccggccagg gcacgcgcct gcgcgcggtg gtgccgctgg
      301 ccgaaccctg aacttccgcg cttcccttga cgcgtgcccc gcgacgcgcc agcgtagggg
      361 cgggggagga tcaagatgcg cgtgttgatc gccgacgacc acacgatggt gcgcgagagc
      421 ctggtcagcg tgctgcaggc cgctggcgac gtgcaggtgg tcgcccaggc cgcggacggc
      481 atcgaggcga tcgaactcgc cttgcagacg cggccggacg tggtggtcgc cgacctgtcg
      541 atgccgcgcc tcaacgggct ggaagtggtg cgccggctgc gcgaagcgtt gccgcacacg
      601 cgcgtgctgg tcctgaccat gcacggcgag gacgaatacg tgctgcaggc ggtgcgcgcc
      661 ggcgcgtccg gctacctggt caaggacagc gccgcgtcgg aactgctgtc cgcgctgcgc
      721 agcctgcatg ccgggcgcgg ccatttcggg ccgcgcgcgg cgaaggcctt ggcggaacag
      781 ctgcaccggc ccgagcgtcc gctggacgat ccgtacggcc ggctcaccgc gcgcgagcgc
      841 gaggtcttcc acctgatcgc cgaaggccgg accaccaagg acatcgccca gcgcctgggc
      901 atcagcgcca agaccgccga gaaccaccgg ggccgcgtgc tcgacaagct cggcgtgcgc
      961 aacaccgccg aactcgtgcg ctatgcgctg cgcaagggcc tggtcgagta gccgcgcccg
     1021 cggcgtcggt tcgcacgcgg tgtatgctcg ggcgcagtcg cccggagccg ccgcatgaag
     1081 cgcatcgccg tcgtcctgac ctgcatcctg ctcgtcgcct gcagctccgg cccggtgcgg
     1141 cgcgtttccg aaccggcggc caacatccag cagctgaccg tgcgcgccga cggcagctgg
     1201 gcggtggacc tgcgcatcga caatttcagc agcgtgccga tgcgcttcga tgcggtgtcg
     1261 ctcgagctcg gcgtcggcgg cgaggatgca ggcaccctgc gggggcaacc cgtgctcacc
     1321 atcggccccg aggcggccga cgtcgcgtcg ctgacgctgg cgccgagcgg ggcggcgagg
     1381 atcgccgtcg ccgatgcgct ggcgagtggc cgcaacctcg gctacacgct tcggggcacg
     1441 ctcaccgccg cggcggagaa cggccgcccg cgcgcctacg acatcgacct gaagaacgcg
     1501 ctgagcccgg tgccggggct gaccggcgtg ctgcgctgac ggatcactcg tcgtccggcc
     1561 agcggatcgc cggcgtttcc ggtctgctcc tgggcagcgg ctgcgcggcg accgcttccc
     1621 acaccttcaa cgcgtcgacg gtggccgcca cgtcgtgcac gcgcagcagc agcgcgccgc
     1681 gctgggcggc gatcaggtgc gcggcgacgg agccgtgcac gcgctcgtgc gggtccaggc
     1741 ggccggtcag ttcgccgatg cttttcttgc gcgagaggcc tgcgagcacg ggcaccccga
     1801 ggtcggtgaa gcggtcgagc cgggcgagca acgccaggtt gtgctgcagc gtcttgccga
     1861 acccgaagcc ggggtcgacg acgatgcgcc ttttctcgat gcccgccatc tccgcggcga
     1921 agatgcgctc ggcgaggaag cggtggactt cggcgacgac gtcgtcgtaa tgcggcgcgt
     1981 cctgcatgga gcgcggttcg ccctgcatgt gcatcagcac caccggcacg ccgagcgacg
     2041 ccgcggcgtc cagcgcgcca tcgcgacgca gcgcgtacac gtcgttgacc atgccggcgc
     2101 cggccgcgac cgccgcccgc atcacctccg gcctggaggt gtcgatgctg atcggcaacg
     2161 gcgtttcctt cgccagccgc tcgatcaccg gcagcacgcg gcgcagttcc tcttccagcg
     2221 gcacgtcggc cgcacccggg cgggtggatt cgccgccgac gtcgagcgcg tcggcgcccg
     2281 cttccgccag gcgcagcccg tgcgcgacgg ccgcatcggc cgtggcgtgc tcgccgccgt
     2341 cggagaacga atcgggcgtg acgttgacga tgccgagcac gcgcgggcga tcgagcctga
     2401 gcaggcggcc ggcgcaatcg agctgcgggg cgatgtcgaa catgggaagc ggacccggac
     2461 cggtggaggc gcaggatagg cgctggcggc gcggggcgac agccgccgcc ggtcagggcg
     2521 gggccggcgc gtcgcgcggt tcgagccggg cgaagatgcg ccggaagcgc ggcaggccac
     2581 gcaggctgtc gaggtcgtgg tcgtgctcga tccagtcgcg gaagccctgc ccggtggcga
     2641 ccgcgcgctc cagcaggtcg agcgcccgcc cgctgtcgcc ggccagcgcg aagtagcacg
     2701 cgcagttgta cagggtgtcg tagtcgttgg gccgcaggtg cagggccatc tcggcgtgct
     2761 ccttcgccgc ggcatcctcg ccgagccgct gcagcagcgc ggaggcgccg tagtgggcgc
     2821 gcgcgttttc cgggtccagt tcgatgcagt gcaggctcgc ggccacgccg cggcgggcca
     2881 tgtcgtcggc gcgggcagcg tccccgagcg cctcggcggc gccgaccccg atcatcagcg
     2941 cctggaactc gtcgggatgc acgcggtgcg ccgcctcgaa caggtcgagc gcgcgcgcga
     3001 actggccgcg ggcgaagcag tgtcgcgcga agtagtagtg cgcttcgtac aggtccggat
     3061 tgagttcgat cgcgcgcgtg aactcggcgg cggcggcctc gtcgtcgccg gaaaaggcga
     3121 gcgtgtgcgc gtgcgcgacg tgcgcttcgg ccagctcgag cgccagctcg agcgcgcgcc
     3181 ggctcgcggc cagcgcctcg tccagcacgt ccgcgggccg cgcgaagcgc cacagcatca
     3241 gctcgcagag cacgtcggcg agcccggcgt gggcctgcgc gtaatcgggg tcgagcgcga
     3301 gcgcgcgacg gtacatctgc gccgaggcct cccacttgat ccggtccttg gcgccttcga
     3361 gccggcgccc acgcaggtag aagtcgtagg cgcgcatgtc gcgcggcgca tagcgctgca
     3421 ggtccagcgc gtcgggcgtg cgcagcgaca cccgcaaggc ctcgaccacg ttgcgcgcga
     3481 tctcctcctg gatcgcgaac acgtcttcca gccgccggtc gaagttctcc gaccacaggt
     3541 ggtagccgtt gccggcgtcg atcagctgcg cggtcacccg cacgcgctcg ccggacttgc
     3601 gcacgctgcc ttccatgatc gccgccacgc tgagcgcgcg gccgatctcg cgcgcatcgg
     3661 tgttgccctc gcggaagcgg aacgaagagg tgcgcgacgc cacccgcagg ccgcggacgc
     3721 gggtcagcgc gttgaggatc tcctcggcca gcccgtcgca gaagtagtcc tggtcgtgcg
     3781 cctcgctcag gtcggcgaac ggcaggatcg cgaccgaggc ctccggcgcg ggcggaaacg
     3841 ggggtggttc ggtggcgttc gccggcgcgg tgcgctcgat cccgcgcgcg ccgatgtcgt
     3901 aggtccaggc gagcgtgcag gccagcagga agccgacggc cagcagcacc agcagcagcc
     3961 gcatcgacca tgccggcagg ccgagcggtt cgaaggtcgc gctgccgagc tggaccagga
     4021 tccagcccgc caccaggtac gcgccggcca cgcggaacac ccgccggcgg cggaattccg
     4081 cccagccctg cctcaacgat gcggtccagt cgcgcatgcg gagcggcctc gctctgcggc
     4141 cgccgcgggg cggcagccgc cgcggtc
//
LOCUS       DATIQC010000297         4681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_408719, whole genome shotgun sequence.
ACCESSION   DATIQC010000297 DATIQC010000000
VERSION     DATIQC010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408719"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..707
                     /locus_tag="VLM17_06350"
     CDS             <1..707
                     /locus_tag="VLM17_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HSR65207.1"
                     /translation="HGEERFGKNHHDHHGDHEDEEVSADHHHGLAPGEKPHESPWVVT
                     LPLVLLAIPSVLVGFFTAGPMLFGRDWLGKVEQLPYFLGAIEVNPSHDVLARLGEEFH
                     GPVQFALHGFLAPAFWLAFAGFALATVMYWWKPELHHKARRLFALPTRILENKYGMDD
                     LWIGGFAGGGLRLGRVSRWTDTNVIDGSVNGSARLVDFAAGLLRRTQSGYLYHYAFAM
                     ILGLIALLAVLIRYWH"
     gene            741..2261
                     /locus_tag="VLM17_06355"
     CDS             741..2261
                     /locus_tag="VLM17_06355"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HSR65208.1"
                     /translation="MAATASFPLLSLLVWLPILGGALCLLLGNSRPGAARWLALAFGL
                     AALALSVPLFTGFDMAAAGMQFVEQRAWIPAYDIQYHLGADGISVALIGLTTLTTVLV
                     LVGAWGSVSERVAQYYAAFLFLEGLMIGVFAAMDAMLFYVFFEGMLIPMFLIIGVWGG
                     PRRIYASIKFFLYTFLGSVFMLVGLVWLYLQGGSWQLADMYALPLSMPAQTWLFFAFL
                     IAFAVKVPMFPVHTWLPDAHVEAPTGGSVILAAIMLKIGGYGFLRFSLPIVPDASHAY
                     AWVVIALSLIAVIYIGLVALVQDDMKKLIAYSSISHMGFVTLGTFIAFGLVRDFGNLD
                     AARLGLQGAMVQMISHGFVSGAMFSCVGVLYDRMHTRMIKDYGGVANVMPWFAAFTVL
                     FAMANSGLPGTSGFVGEFMVILATFQKQPLLAFLAATTLITGAAYTLWLTKRVIWGDV
                     TNPHVAEMEDINFREWIVLGVFAAGVLLVGVWPKPLTDLMEPSIAQLASQLAATKL"
     gene            2275..3714
                     /gene="nuoN"
                     /locus_tag="VLM17_06360"
     CDS             2275..3714
                     /gene="nuoN"
                     /locus_tag="VLM17_06360"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HSR65209.1"
                     /translation="MTTMPTATDLLPLLPELVLVGGAFALLMLDLFIDESRRIVTHLL
                     AIALLLVAGWMAFAGTGGQGTVLGGMFVRDTMSDVLKGGACLLTALALVYAWPFLRQR
                     GLYKGEVAVLMLFAVAGMMLLISAGSLVMVYLGLEMLALCSYALVAIDRDSGLASEAA
                     MKYFVLGSLSSGLLLYGMSLLYGATGTLDLATLRAAVAGSQETGLLLAGTVFMIAGIA
                     FKFGAAPFHMWVPDTYQGAPTPITLFIGSAPELASFALAFRLLEGGVGPLDDRWRLLI
                     AGLAVASLAIGNLVALMQANLKRMLAYSAISHIGFLFLGLAGGGPQGYAAAMFYVISY
                     AIMSAAAFGAIVVLSNQGFEADRIDDFKGLNARSPWLAGLVLCIMASMAGVPPFLGFW
                     AKLAVLRAAVQGDMLWLAIVGIVFAVVGAFYYLRVIKAMYFDAAAADAPAPRDDRPLR
                     IAFAVNALALLALGIFWNPIMAWCQQAFA"
     gene            3795..3871
                     /locus_tag="VLM17_06365"
     tRNA            3795..3871
                     /locus_tag="VLM17_06365"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3829..3831,aa:Met,seq:cat)
     gene            4065..4643
                     /gene="rimP"
                     /locus_tag="VLM17_06370"
     CDS             4065..4643
                     /gene="rimP"
                     /locus_tag="VLM17_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000028 - ribosomal small subunit assembly
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0042274 - ribosomal small subunit
                     biogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HSR65210.1"
                     /translation="MSGKANEIAALLVPTVASLGLELLGVEYLPAPGGALLRLYIDLP
                     AGAVDAAGEPRSVGIEDCEAVSREVSAQLDVADPISGHYTLEVSSPGVDRPLFTAAQF
                     ARFAGGEAKAALKLPQDGRRRLQGRILRVAGDTVVFDVDGSEIAVAVDNIEKAKLVPD
                     WVALGLAPAQDKSGRDARPGKQKKAKPNGSPG"
BASE COUNT          614 a         1603 c         1589 g          875 t
ORIGIN      
        1 tccatggcga ggagcgtttc ggcaagaacc atcacgacca tcatggcgat catgaggatg
       61 aggaggtgtc ggccgatcat catcatggcc tcgcgccggg tgaaaagccg cacgagtcgc
      121 cgtgggtggt gaccctgccg ctggtcctgc tcgcgatccc gtcggtgctg gtcggcttct
      181 tcaccgccgg gccgatgctg ttcggcaggg actggctggg caaggtcgag cagctgccgt
      241 atttcctcgg cgcgatcgaa gtgaatccat cgcacgacgt gctggccagg ctcggcgagg
      301 aattccacgg cccggtccag ttcgcgctgc atggcttcct cgcgccggcg ttctggctgg
      361 ccttcgccgg tttcgcgctc gccacggtca tgtactggtg gaagccggaa ctgcaccaca
      421 aggcgcgccg gctgttcgcc ttgcccaccc gcatcctcga gaacaagtac ggcatggacg
      481 acctgtggat cggtggtttc gccggcggcg gcctgcgcct ggggcgcgtg tcgcgctgga
      541 ccgacaccaa cgtgatcgac ggcagcgtca acggcagcgc gcgcctggtc gacttcgccg
      601 cgggcctgct gcgccgcacc cagtccggct acctctacca ctacgccttc gcgatgatcc
      661 tcggcctgat cgcgctgctg gccgtcctca tccgctactg gcattgatcg acaaggaccc
      721 gtgacgtgag ccccgagccc ttggctgcta ccgcttcctt cccgctgctc agcctgctgg
      781 tgtggctgcc gatcctcggc ggcgcgctgt gcctgctgct cggcaactcg cgacccggcg
      841 ccgcgcgctg gctggcgctg gccttcggcc tcgccgcact cgcgctgagc gtcccgctgt
      901 tcaccggctt cgacatggcc gccgccggca tgcagttcgt cgagcagcgc gcgtggatcc
      961 cggcctacga catccagtac cacctcggtg ccgacggcat ctcggtcgcg ctgatcgggc
     1021 tgaccacgct gaccacggtg ctggtgctgg tcggcgcatg gggctcggtg tccgagcggg
     1081 tggcgcagta ctacgccgcg ttcctgttcc tcgaaggcct gatgatcggc gtgttcgccg
     1141 cgatggacgc gatgctgttc tacgtgttct tcgagggcat gctgatcccg atgttcctca
     1201 tcatcggcgt gtggggcggc ccgcgccgca tctatgcctc gatcaagttc ttcctgtaca
     1261 ccttcctcgg ttcggtgttc atgctggtcg gcctggtctg gctgtacctg cagggcggca
     1321 gctggcagct ggccgacatg tacgcgctgc cgctgtcgat gccggcgcag acgtggctgt
     1381 tcttcgcctt cctgatcgcc ttcgcggtca aggtgccgat gttcccggtg cacacctggc
     1441 tgcccgacgc gcacgtcgag gcgccgaccg gcggctcggt gatcctggcg gcgatcatgt
     1501 tgaagatcgg cggatacggc ttcctgcgct tcagcctgcc gatcgtgccg gacgcgagcc
     1561 acgcctacgc ctgggtggtg atcgcgctca gcctgatcgc ggtgatctac atcggcctgg
     1621 tcgccctggt gcaggacgac atgaagaagc tgatcgcgta ttcgtcgatc tcgcacatgg
     1681 ggttcgtgac gctgggcacc ttcatcgcgt tcgggctggt gcgcgacttc ggcaacctcg
     1741 atgccgcgcg gctcggcctg cagggcgcga tggtgcagat gatcagccac ggcttcgtgt
     1801 cgggcgcgat gttctcctgc gtcggcgtgc tctacgaccg catgcatacg cgcatgatca
     1861 aagactacgg cggcgtggcg aacgtgatgc cgtggttcgc ggcgttcacc gtgctgttcg
     1921 cgatggccaa ctcgggcctg ccgggcacca gcggcttcgt cggggagttc atggtgatcc
     1981 tggcgacctt ccagaagcag ccgctgctgg ccttcctcgc cgccaccacc ctgatcaccg
     2041 gcgcggccta caccctgtgg ctgaccaagc gcgtcatctg gggcgacgtg accaacccgc
     2101 acgtggccga gatggaggac atcaacttcc gcgagtggat cgtgctcggc gtgttcgccg
     2161 ccggcgtgct gctggtcggc gtgtggccga agccgctgac cgacctgatg gaaccgtcga
     2221 tcgcccagct cgccagccag ctggccgcga ccaagctctg aggaactccc ccgcatgacc
     2281 accatgccca ccgccaccga cctgctgccg ctgctgccgg aactcgtgct ggtcggcggc
     2341 gccttcgcgc tgctgatgct cgacctgttc atcgacgagt cgcgccggat cgtcacccac
     2401 ctgctcgcga tcgcgctgct gctggtggcc ggctggatgg ccttcgccgg cacgggcggg
     2461 cagggcacgg tgctcggcgg catgttcgtg cgcgacacca tgagcgacgt gctcaagggc
     2521 ggcgcctgcc tgctcacggc gctcgcgctc gtctacgcct ggccgttcct gcgccagcgc
     2581 gggctgtaca agggcgaggt cgcggtgctg atgctgttcg cggtcgccgg catgatgctg
     2641 ctgatctctg ccggcagcct ggtgatggtc tacctcggcc tcgagatgct ggcgctgtgc
     2701 tcctatgcgc tggtggcgat cgaccgcgac agcggcctcg cctccgaggc ggcgatgaag
     2761 tatttcgtgc tcggctcgct ctcctcgggc ctgctgctgt acggcatgtc gctgctgtac
     2821 ggcgccaccg gcaccctcga cctcgccacc ctgcgcgcgg cggtcgccgg ctcgcaggaa
     2881 accggcctgc tgctggcggg cacggtgttc atgatcgccg gcatcgcctt caagttcggc
     2941 gccgccccct tccacatgtg ggtgcccgat acctaccagg gcgcgcccac gccgatcacc
     3001 ctgttcatcg gctcggcgcc ggaactggcg tccttcgcgc tcgcgttccg cctgctggaa
     3061 ggcggcgtcg gcccgctgga cgaccgctgg cgcctgctga tcgccggcct cgcggtcgca
     3121 tcgctggcga tcggcaacct ggtcgcgctg atgcaggcca acctcaagcg catgctggcg
     3181 tactcggcga tctcgcacat cggcttcctg ttcctcggcc tcgccggcgg cggcccgcag
     3241 ggctacgcgg cggcgatgtt ctacgtgatc agctacgcga tcatgtcggc ggcggcgttc
     3301 ggcgcgatcg tggtgctgtc gaaccagggc ttcgaggccg accgcatcga tgacttcaag
     3361 ggcctgaacg cgcgcagccc atggctcgcc gggctcgtgc tctgcatcat ggcgtcgatg
     3421 gccggcgtgc cgccgttcct cggcttctgg gccaagctcg cggtgctgcg cgcagcggtg
     3481 cagggcgaca tgctgtggct ggcgatcgtc ggcatcgtgt tcgccgtggt cggcgcgttc
     3541 tactacctgc gcgtgataaa ggccatgtac ttcgacgcgg cggccgccga tgcacccgcg
     3601 ccgcgcgacg accgcccgct gcgcatcgcc ttcgcggtca atgcactggc gctgctggcc
     3661 ctcgggatct tctggaaccc gatcatggcc tggtgccagc aggccttcgc ctgactgccg
     3721 gcgaagcggc cgtcgtcccc gcattcacga ggcttgcaac caggccgccg cttcccgcat
     3781 aattccgctc ctgctgcggg gtggagcagt ctggcagctc gtcgggctca taacccgaag
     3841 gtcgcaggtt caaatcctgc ccccgctacc agcttcagct ggcgaaaaag gctcttccgg
     3901 agcctttttt ggtttttgac cggcgcgtct tgccggtcgg tttgaccggc gtgttgcagc
     3961 cggccgggct cgagggcgca tcgccgatgc gccgtcaccg acatccagcg gtatcggaca
     4021 aggggcccgc cgggcccctt ttcattttcc ggaggatcgg aaggatgagc ggaaaggcca
     4081 acgaaatcgc ggcgctgctg gttccgacgg tcgcctcgct gggcctcgag ctgctcggcg
     4141 tcgaatacct gccggcgccc ggtggcgcgc tgctgcggct gtacatcgac ctgcccgccg
     4201 gggcggtgga cgcggccggc gagccgcgca gcgtcggcat cgaggattgc gaggcggtga
     4261 gccgcgaggt ttcggcgcag ctcgacgtcg ccgacccgat cagcggccac tacacgctcg
     4321 aggtgtcctc gcctggcgtg gaccgcccgc tgttcaccgc ggcgcagttc gcgcgtttcg
     4381 ccggcgggga agcgaaggcg gcgctgaagc tgccgcagga cggccgccgg cggctgcagg
     4441 ggcggatcct gcgcgtggct ggcgacacgg tggtgttcga cgtggacggc agcgaaatcg
     4501 ccgttgccgt cgacaacatc gagaaggcga agctcgtgcc cgactgggtg gcgctggggc
     4561 ttgctcccgc gcaggacaag tccgggcgcg acgcgcgacc gggcaagcag aagaaggcga
     4621 agccgaacgg cagtcccggc tagaacaatg gttttccagc cccttgagtc aaggggcgac
     4681 c
//
LOCUS       DATIQC010000298         3788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_550591, whole genome shotgun sequence.
ACCESSION   DATIQC010000298 DATIQC010000000
VERSION     DATIQC010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550591"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /gene="moaA"
                     /locus_tag="VLM17_06375"
     CDS             <1..894
                     /gene="moaA"
                     /locus_tag="VLM17_06375"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012511281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019008 - molybdopterin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0061798 - GTP 3',8'-cyclase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HSR65211.1"
                     /translation="CLPDGYEADGRPRFLSLEEVTRLVRAFASLGMSKLRLTGGEPSL
                     RKDLPAIIAAVSTIAGIRRVALTTNGCNLPRHVRLWREAGLGALNVSLDSLDPRRFHA
                     ITGHDRFAEVSEGVEQALGLGFDAVKLNAVLLRGCNDDELPAWLEYLRGRDLTLRFIE
                     LMQTGDNRAFFERHHLRADALEAQLVGDGWQLAPRAADAGPARDYAHPGYRGRVGIIA
                     PYSKDFCANCNRLRVTARGDLRLCLFGDVGIALRPLLQSDGDHDALVARIAAQLGLKA
                     AGHGLHQGLTGLTPHLASIGG"
     gene            897..1898
                     /gene="moaCB"
                     /locus_tag="VLM17_06380"
     CDS             897..1898
                     /gene="moaCB"
                     /locus_tag="VLM17_06380"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006371554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional molybdenum cofactor biosynthesis
                     protein MoaC/MoaB"
                     /protein_id="HSR65212.1"
                     /translation="MDEAPATAAFHMADIRDKRPTRRRAVAVGELHAGPVAYPLIVAR
                     QLPKGDALVMAEIAGLQGAKLASALMPLCHPLPLELVRVRCLPVAARQAIRVYCEVAT
                     EARTGVEMEALAGANAALLTLYDLSKPVEPALAIGGIRLLFKEGGKKGLWRHPDGMSA
                     EETTHYRPRDVARIDGVACAVLTLSDRASSGACEDRSGPELLAGLRRLGAQVDRVEVL
                     PDGIEPLASRLRALAAAGTRLCLCTGGTGLGPRDRTPEALRQVADRVVPGLAEMLRSE
                     SAMHTPLAWLSRAEVVQVGGMLAFALPGSPRAARQCMDILAPLLAHALAMVDGGTHA"
     gene            1895..3157
                     /gene="glp"
                     /locus_tag="VLM17_06385"
     CDS             1895..3157
                     /gene="glp"
                     /locus_tag="VLM17_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006448718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1990586 - divisome complex [Evidence
                     IEA];
                     GO_function: GO:0061599 - molybdopterin molybdotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gephyrin-like molybdotransferase Glp"
                     /protein_id="HSR65213.1"
                     /translation="MIGYDEALAAILREARPLASESRPVAQALGRILAAGVASPDALP
                     PFDNSAMDGFALRAGDATLSAGRAFDVRGAQVAGDAQADATADAGGAWEIMTGARLPE
                     GFDTVVPVEQVEVLAQEEGRPRRIRLAADAARGQHVRRRGEDVPLHVEVLPAGARVQP
                     QQLMLLSALGVADVRVARRPKAAILTTGRELVDDPAQPLASGEIRNCNGPFLAARIAE
                     AGAEVVCRRTVGDDPALFRAALAEALAAGAEVVVSTGAVSMGRHDFVPDTLRALGARQ
                     HFHKVRIRPGKPLLFARLAGGALYFGLPGNPVSCAVGLRFFVEPALRAMLGLAPERPL
                     RVPLAEAFGKRAPLRFHLKGRLDCDDTGRLRAHVLPGQESFRILPLAAGNAWIVIGEE
                     TDALAAGALVEVHGLGHLQPPSWESVAR"
     gene            3154..3414
                     /locus_tag="VLM17_06390"
     CDS             3154..3414
                     /locus_tag="VLM17_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiS"
                     /protein_id="HSR65214.1"
                     /translation="MKIEIQLFGAFRDFEPAALVALELPADAVVGDVRAALERHAVAR
                     WPRFQPALLQRSALASTSSVLRDHEPLPADGRMAVLPPVSGG"
     gene            3438..>3788
                     /locus_tag="VLM17_06395"
     CDS             3438..>3788
                     /locus_tag="VLM17_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005413670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HSR65215.1"
                     /translation="MSFSAVVDIAEARLDPATAIDFVSDPGFGGIAVFVGRVRDLNHG
                     RVVTGVSYDMFDPLALRGFEAIAERARAEFGPKLRLYIAHAKGRLAVGDPAVVVAAGT
                     PHRDEAFRACRQAIE"
BASE COUNT          467 a         1399 c         1417 g          505 t
ORIGIN      
        1 tgcctgcccg acggctacga ggcggacggg cgtccgcgtt tcctgtcgct ggaggaagtc
       61 acccggctgg tgcgcgcgtt cgcctcgctg ggcatgagca agctgcgcct gaccggcggc
      121 gagccgagcc tgcgcaagga cctgccggcg atcatcgccg ccgtctcaac gatcgccggc
      181 atccgccgcg tcgccctaac caccaacggc tgcaacctgc cgcgccacgt gcgcctgtgg
      241 cgcgaagccg gcctgggcgc gctcaacgtc agcctcgaca gcctggaccc gcggcgcttc
      301 cacgcgatca ccggccacga ccgcttcgcc gaagtcagcg aaggcgtcga gcaggcgctc
      361 ggcctcggct tcgacgcggt caagctcaac gcggtgctgc tgcgcggctg caacgacgac
      421 gaactgccgg catggctcga atacctgcgc gggcgcgacc tcaccctgcg cttcatcgaa
      481 ctgatgcaga cgggcgacaa ccgcgcgttc ttcgagcgcc accacctgcg cgcggacgcg
      541 ctggaagcgc agctggtcgg cgacggctgg cagctggcgc cgcgtgccgc cgacgccggc
      601 ccggcgcgcg actacgcgca tcctggctat cgcggccggg tcggcatcat cgcgccgtat
      661 tcgaaggact tctgcgccaa ctgcaaccgc ctgcgcgtca ccgcgcgcgg cgacctgcgg
      721 ctgtgcctgt tcggcgacgt cggcatcgcg ctgcggccgc tgctgcaatc cgacggcgac
      781 cacgacgcgc tggtcgcgcg catcgccgcc cagctcgggt tgaaggccgc cgggcacggc
      841 ctgcaccagg gcctgaccgg cctgactccg cacctggcct cgatcggagg atgaacatgg
      901 acgaggctcc cgccaccgcg gccttccaca tggccgacat ccgcgacaag cggccgaccc
      961 gccgccgcgc cgtggccgtc ggcgaactgc atgccggccc ggtcgcctat ccgctgatcg
     1021 tcgcccgcca gctgcccaag ggcgatgcgc tggtgatggc cgagatcgcc ggcctgcagg
     1081 gcgccaagct cgcctccgcg ctgatgccgc tgtgccatcc gctgccgctg gaactggtgc
     1141 gcgtgcgctg cctgccggtg gcggcgcggc aggcgatccg cgtgtactgc gaagtggcga
     1201 ccgaggcgcg caccggcgtc gagatggagg cgctggccgg cgccaacgcc gcgctgctga
     1261 cgctgtacga cctgagcaag ccggtcgagc cggcgctggc gatcggcggc atccgcctgc
     1321 tgttcaagga aggcgggaag aagggcctgt ggcggcatcc cgacggcatg agcgcggagg
     1381 aaaccacgca ctaccgcccg cgcgacgtcg cgcgcatcga cggcgtggcc tgcgcggtgc
     1441 tcacgctgag cgaccgcgcc agcagcggcg cctgcgaaga ccgctcgggg ccggaactgc
     1501 tcgccggcct gcggcggctc ggcgcgcagg tcgaccgcgt cgaggtgctg cccgacggca
     1561 tcgagccgct cgccagccgc ctgcgcgcgc tggccgcggc cggcacgcgc ctctgcctgt
     1621 gcaccggcgg caccggcctg ggcccgcgcg accgcacgcc ggaagcgctg cgccaggtcg
     1681 ccgaccgggt ggtgccgggc ctggccgaga tgctgcgcag cgaaagcgcg atgcacacgc
     1741 cgctggcgtg gctgagccgc gcggaggtgg tgcaggtggg tggcatgctg gcgttcgcgc
     1801 tgcccggcag cccgcgcgcc gcgcggcagt gcatggacat cctcgcgccg ctgctggcgc
     1861 acgcgctcgc gatggtcgac ggcgggacgc acgcgtgatc ggctacgacg aggcgctggc
     1921 ggcgatcctg cgcgaagcgc gaccgctcgc gtccgaatcc cgccccgttg cgcaagcgct
     1981 cgggcgcatc ctcgccgcgg gggtcgccag ccccgacgcg ctgccgccct tcgacaacag
     2041 cgcgatggac ggcttcgcgc tccgggcggg cgacgcgacg ctgtcggcgg ggcgcgcctt
     2101 cgacgtgcgc ggggcgcagg tcgccggcga cgcgcaggcc gatgcgaccg ccgatgccgg
     2161 cggcgcgtgg gaaatcatga ccggcgcgcg cctgcccgaa gggttcgaca cggtggtgcc
     2221 ggtggagcag gtcgaagtgc tcgcgcagga ggaagggcgg ccacgccgca tccgcctcgc
     2281 cgccgacgcc gcgcgcggcc agcacgtgcg ccggcgtggc gaggacgtgc ccctgcatgt
     2341 ggaagtgctg cccgcggggg cgcgcgtgca gccgcagcag ctgatgctgc tgagcgcgct
     2401 cggcgtggcc gacgtgcgcg tggcgcggcg gccgaaggcc gccatcctga ccaccggccg
     2461 cgaactggtc gacgatcccg cgcagccgct ggcgtcgggc gagatccgca actgcaacgg
     2521 gccgttcctc gccgcgcgca tcgccgaagc cggcgccgag gtcgtttgcc gccgcacggt
     2581 cggcgacgat ccggcgctgt tccgcgcggc gctggcggag gcgctcgcgg ccggcgccga
     2641 ggtggtggtc agcaccggcg ccgtgtcgat gggacgccac gacttcgtgc ccgacacgct
     2701 gcgcgcgctc ggtgcccggc agcacttcca caaggtgcgg atccgtcccg gcaagccgct
     2761 gctgttcgcg cggctggctg gcggcgcgtt gtatttcggc ctgcccggca acccggtgtc
     2821 gtgcgcggtg gggctgcgtt tcttcgtcga gccggcgctg cgcgcgatgc tcggcctggc
     2881 gccggagcgg ccgttgcgcg tgccgctcgc ggaggcgttc ggcaagcgcg cgccgctgcg
     2941 cttccacctc aagggccggc tcgactgcga cgacaccggc cgcctgcgcg cgcacgtgct
     3001 gccggggcag gagtcgttcc ggatcctgcc gctggccgcg ggcaacgcct ggatcgtgat
     3061 cggcgaggag accgacgcat tggccgccgg cgcgctggtc gaggtccacg gcctgggcca
     3121 cctccagccg ccttcatggg aatccgtcgc gcgatgaaga tcgaaatcca gttgttcggt
     3181 gcgttccgcg atttcgagcc ggccgcgctg gtcgcgctcg agctgcccgc ggatgcggtc
     3241 gtcggcgacg tgcgcgcggc actggagcgg catgccgtcg cccgctggcc gcgcttccag
     3301 ccggcgctgc tgcagcgctc ggcgctggcc agcaccagca gcgtgctgcg cgaccacgag
     3361 ccgctgcccg cggacgggcg catggcggtg ctgccgccgg tgagcggagg ctgagcatgg
     3421 gcgcagcacc ctgcggcatg tcgttcagcg cggtggtcga catcgccgaa gcccggctcg
     3481 atccggcgac ggcgatcgat ttcgtctccg atccgggctt cggcggcatc gccgtgttcg
     3541 tcggccgcgt gcgcgacctc aaccacgggc gcgtggtcac cggcgtgagc tacgacatgt
     3601 tcgacccgct cgcgctgcgc ggtttcgagg ccattgccga acgggcgcgc gcggagttcg
     3661 ggccgaagct caggctctac atcgcccacg cgaagggccg gctcgcggtc ggcgatcccg
     3721 cggtggtcgt cgccgcgggc acgccgcacc gcgacgaggc gttccgcgcc tgccggcagg
     3781 cgatcgag
//
LOCUS       DATIQC010000299         4301 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_514794, whole genome shotgun sequence.
ACCESSION   DATIQC010000299 DATIQC010000000
VERSION     DATIQC010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514794"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VLM17_06400"
     CDS             <1..454
                     /locus_tag="VLM17_06400"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR65216.1"
                     /translation="CPPAAAGLPALLAFVAAMQAPCEALVARCPGRSPRRKRQLFARL
                     QRARLHLDGHAGEAVRLAELAALCNVSIWHFTKTFHAVYGEGPREAIARLRLEQASAL
                     LQATRLPVGEVGAACGFENPCSFSRAFRAHYGTTASRWRAAHQDSRAA"
     gene            complement(459..1013)
                     /gene="ppa"
                     /locus_tag="VLM17_06405"
     CDS             complement(459..1013)
                     /gene="ppa"
                     /locus_tag="VLM17_06405"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HSR65217.1"
                     /translation="MGLDLVPTGKNPPDEINVIIEIPKDAEPVKYEVDKASGAIFVDR
                     ILSTPMRYPCNYGYIPHTVCGDGDPADVLVILPLPLIPGSVIRCRPVGVLKMSDEAGS
                     DEKILAVPVDKVFAGYAHIDDIAKVSKHWLERIGHFFEHYKDLEKGKWVKLDGWDGAV
                     EAKRIIVESMGRYEGTPEGDKPHF"
     gene            complement(1146..3224)
                     /locus_tag="VLM17_06410"
     CDS             complement(1146..3224)
                     /locus_tag="VLM17_06410"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HSR65218.1"
                     /translation="MLEQYGLTLALACAVIAILYGIFSARWISAQPAGNERMQQIAGA
                     IQEGARAYLNRQYTTIAIAGVVLFLVIGFALNWHTAIGFLVGAVLSGAAGYIGMNVSV
                     RANVRTAEAARSGIGKAMDVAFRGGAITGMLVVGLGLLGVAGYFAVLYKHLGIEVESA
                     LHALVGLAFGASLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNV
                     GDNVGDCAGMAADLFETYAVTVIATMLLAGLSFAGNFNAVLYPLVLGGVSIVASIIAT
                     FFVKVKPGGSIMGALYKGVIVSAVLSAVAFWFVTADLLPDGLTTGDGLAIPRNALFAC
                     SLIGLVLTGLIVWITEYYTGTQFKPVRHIAQASTTGHGTNIIAGLGVSMKATALPVIV
                     ICAAIWGAYALGGLFGIAVAATSMLSMAGMIVALDAYGPITDNAGGIAEMAELPPEVR
                     NITDPLDAVGNTTKAVTKGYAIGSAALAALVLFADYTHNLAVQFGGATLTFDLSNHYV
                     IIGLLIGGLIPYLFGAMAMEAVGRAAGAVVVEVRRQFKSIAGIMEGTGKPEYDKAVDM
                     LTRAAIKEMIIPSLLPVLVPVLVVFGFKWLGGAEAGAQALGGVLIGTIVTGLFVAISM
                     TTGGGAWDNAKKYIEDGNFGGKGSEAHKAAVTGDTVGDPYKDTAGPAVNPLIKIINIV
                     ALLLVPLLGG"
     gene            3467..3982
                     /locus_tag="VLM17_06415"
     CDS             3467..3982
                     /locus_tag="VLM17_06415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65219.1"
                     /translation="MPPRPLLSALGLAVLAGNAWAGDPVPEVQRPPAAPQAVGVLHTL
                     RTIPEACARIEGRFSGDPAQPYQYGVVRTSAACQPRAALVDAGKAKPRTAKGWVFNDL
                     IRVPSAACPQQQAVLRIWRHPADATPPKLDAQGRSRIYLADSVSKAKAGKLPPIPLYT
                     ATLAVEGTPCR"
     gene            complement(3986..>4301)
                     /locus_tag="VLM17_06420"
     CDS             complement(3986..>4301)
                     /locus_tag="VLM17_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812512.1"
                     /note="catalyzes the formation of D-fructose
                     1,6-bisphosphate from D-fructose 6-phosphate in
                     glycolysis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diphosphate--fructose-6-phosphate
                     1-phosphotransferase"
                     /protein_id="HSR65220.1"
                     /translation="VGRKAVQYALKDMNGVMPVIVRTADAPYRWKVEPVALERIANHE
                     KTMPAGFIRKDGYGITAAARRYLEPLIRGEAPPPYGRDGLPKYATAAGMLRPRLLPRW
                     EG"
BASE COUNT          631 a         1538 c         1488 g          644 t
ORIGIN      
        1 gtgcccgccc gcggcggccg gcttgccggc gctgctggcc ttcgtcgccg cgatgcaggc
       61 gccctgcgag gcgctggtcg cgcgctgtcc gggccggtcg ccgaggcgca agcggcagct
      121 gttcgcgcgc ctgcagcgcg cgcgcctgca tctcgacggc catgccggcg aggccgtgcg
      181 cctggccgag ctggcggcgc tgtgcaacgt ctcgatctgg cacttcacca agaccttcca
      241 cgcggtctat ggcgaaggcc cgcgcgaggc gatcgcgcgc ctgcgcctgg agcaggcgtc
      301 ggccctgctg caggcgaccc gcctgccggt cggcgaagtc ggcgcggcct gcggcttcga
      361 gaacccgtgc agcttctcgc gcgccttccg cgcccattac ggcacgaccg cctcgcgctg
      421 gcgcgccgcg caccaggaca gccgcgcggc ctgaccgctc agaagtgcgg cttgtcgccc
      481 tcgggcgtgc cctcgtagcg ccccatcgac tcgacgatga tgcgcttggc ctcgacggcg
      541 ccatcccagc cgtcgagctt gacccacttg cccttctcga ggtccttgta gtgctcgaag
      601 aagtggccga tgcgctcgag ccagtgcttg ctgaccttgg cgatgtcgtc gatgtgcgca
      661 tagccggcga acaccttgtc gaccggcacc gcgaggatct tctcgtcgct gcccgcctcg
      721 tcgctcatct tcagcacgcc gaccgggcgg cagcggatca ccgagcccgg gatcagcggc
      781 agcggcagga tcaccagcac gtcggccggg tcgccgtcgc cgcacacggt gtgcgggatg
      841 tagccgtagt tgcaggggta gcgcatcggc gtcgacagga tgcggtcgac gaagatcgcg
      901 ccggaggcct tgtcgacctc gtacttgacc ggctcggcgt ccttcgggat ctcgatgatg
      961 acgttgattt cgtccggcgg gttcttgccg gtggggacga ggtccaggcc cattgcgctg
     1021 ctccgacgtg aatgcggccc gtgccgcggt cgcggcacag gcggtgtggg gaaggggcgc
     1081 gcattttacg cggaaacgaa aaagccccgc cggagcgggg ctttccgtgt cgccggatcg
     1141 accgctcagc cgccgagcag cggcaccagc agcagggcga cgatgttgat gatcttgatc
     1201 agcgggttga ccgccgggcc ggcggtgtcc ttgtagggat cgccgacggt gtcgccggtg
     1261 accgccgcct tgtgcgcttc cgagcccttg ccgccgaagt tgccgtcctc gatgtacttc
     1321 ttggcgttgt cccaggcgcc gccgccggtg gtcatcgaga tcgcgacgaa caggccggtg
     1381 acgatcgtgc cgatcagcac gccgcccagc gcctgcgcgc cggcttccgc gcccccgagc
     1441 cacttgaagc cgaacaccac cagcaccggc accagcaccg gcagcagcga cggaatgatc
     1501 atttccttga tcgcggcacg cgtgagcatg tcgacggcct tgtcgtactc cggcttgccg
     1561 gtgccttcca tgatccccgc gatgctcttg aactggcggc gcacttccac caccaccgcg
     1621 cccgccgcgc ggccgacggc ttccatcgcc atcgcgccga acaggtaggg gatcaggccg
     1681 ccgatcagca ggccgatgat cacgtagtgg ttggacaggt cgaaggtgag cgtcgcgccg
     1741 ccgaactgca ccgccaggtt gtgggtgtag tcggcgaaca ggacgagtgc ggcaagggcc
     1801 gccgaaccga tcgcatagcc cttggtcacc gccttggtgg tgttgccgac cgcatccagc
     1861 ggatcggtga tgttgcgcac ctccggcggc agctcggcca tctcggcgat gccgccggcg
     1921 ttgtcggtga tcgggccgta ggcgtccagc gccacgatca tgccggccat cgacagcatg
     1981 gaggtcgccg cgaccgcgat gccgaacagg ccgccgagcg cgtacgcgcc ccagatcgcc
     2041 gcgcagatca cgatcaccgg cagcgcggtc gccttcatcg acacgccgag gccggcgatg
     2101 atgttggtgc cgtggccggt ggtggaggcc tgcgcgatgt gccgcaccgg cttgaactgg
     2161 gtgccggtgt agtactcggt gatccacacg atcaggccgg tcagcaccag gccgatcagc
     2221 gaacacgcga acagcgcgtt gcgcgggatc gccaggccgt cgccggtggt caggccgtcc
     2281 ggcagcaggt cggcggtgac gaaccagaac gcgaccgccg acagcaccgc cgacacgatc
     2341 acgcccttgt acagcgcgcc catgatcgag ccgcccggct tcaccttgac gaagaacgtg
     2401 gcgatgatcg aggcgacgat cgacacgccg ccgagcacga gcgggtagag caccgcgttg
     2461 aagttgccgg cgaagctcag gccagccagc agcatcgtcg cgatcacggt gaccgcgtag
     2521 gtctcgaaca ggtcggccgc catgccggcg cagtcgccga cgttgtcgcc gacgttgtcc
     2581 gcgatcaccg ccgggttgcg cgggtcgtcc tcgggaatgc ccgcctcgac cttgccgacg
     2641 aggtcggcgc cgacgtccgc gcccttggtg aagatgccgc cgccaagacg cgcgaagatc
     2701 gagatcagcg aggcgccgaa ggcgaggccg acgagggcgt gcagcgcgct ttcgacttcg
     2761 atgcccaggt gcttgtagag caccgcgaaa tagccggcga cgccgagcag gccgaggccc
     2821 accaccagca tgccggtgat cgcgccgccg cggaacgcga cgtccatcgc cttgccgatg
     2881 ccgctgcgcg cggcctcggc ggtgcgcacg ttggcgcgca ccgacacgtt catgccgatg
     2941 tagccggcgg cgcccgagag caccgcgccg accaggaagc cgatcgccgt gtgccagttg
     3001 agcgcgaagc cgatgaccag gaacagcacc acgcccgcga tcgcgatcgt cgtgtactgg
     3061 cggttgaggt aggcgcgcgc gccttcctgg atcgcgccgg cgatctgctg catgcgttcg
     3121 ttgccggcgg gctgcgcgct gatccagcgc gccgagaaga tcccgtacag gatcgcgatg
     3181 acggcgcagg ccagcgccaa ggtcaaaccg tactgctcca gcatgtaccc ctccccgaga
     3241 gtggaagaac ctggaatttc tgacgaccga acgagttgtg gtgctgcgcg cggcgggccg
     3301 caggcaaccg gccgactatc gcacacgccg ctggcgcgcg gtatgcgcat tgcagcgcgg
     3361 caccgggcgg gcggatggga cgcgccgggt tccgggccgc ggccccggtg tcaatgccga
     3421 ttcagcccga tcgtgcgagc ctgcgccctc acccaggagg acgccgatgc cgccgcgccc
     3481 gctgctttcc gcccttggcc tcgcggtcct cgccggcaac gcgtgggccg gcgatccggt
     3541 ccccgaagtc cagcgtccgc cggccgcgcc gcaggcggtc ggcgtgctgc acacgctgcg
     3601 caccattccc gaggcctgcg cgcgcatcga gggtcgcttc agcggcgacc ccgcgcagcc
     3661 ctaccagtac ggcgtcgtgc gcaccagcgc ggcctgccag ccgcgcgcgg ccctggtcga
     3721 cgccggcaag gcgaaaccgc gcacggccaa gggctgggtc ttcaacgacc tgatccgcgt
     3781 gccgagcgcg gcctgcccgc agcagcaggc ggtgctgcgc atctggcgcc atccggccga
     3841 cgccacgccg ccgaagctcg atgcgcaggg ccgctcgcgc atctatctcg ccgattcggt
     3901 cagcaaggcc aaggccggca agctgccgcc gatcccgctg tacacggcga cgctggcggt
     3961 ggaaggcacg ccctgccgct gagcctcagc cttcccagcg cggcagcagc cgtggccgca
     4021 gcatccccgc cgccgtcgcg tacttcggca gcccgtcgcg cccgtacggc ggcggtgcct
     4081 cgccgcggat cagcggttcg aggtagcggc gcgccgccgc ggtgatgccg tagccgtcct
     4141 tgcggatgaa gcctgccggc atcgtcttct cgtggttggc gatgcgctcg agcgcgaccg
     4201 gctcgacctt ccagcggtag ggcgcatcgg ccgtgcgcac gatcaccggc atcaccccgt
     4261 tcatgtcctt gagcgcgtac tgcaccgcct tgcggcccac c
//
LOCUS       DATIQC010000300         1599 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_514854, whole genome shotgun sequence.
ACCESSION   DATIQC010000300 DATIQC010000000
VERSION     DATIQC010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514854"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..236)
                     /locus_tag="VLM17_06425"
     CDS             complement(<1..236)
                     /locus_tag="VLM17_06425"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR65221.1"
                     /translation="MSALETPRLRLRLLDGRDQALFCHLYTDPAVMRRILPPLSADAA
                     AAGFGRACRHNGREAPGHRYWVIEDKASGCGVGIA"
     gene            complement(233..1513)
                     /locus_tag="VLM17_06430"
     CDS             complement(233..1513)
                     /locus_tag="VLM17_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pepsin-like aspartic protease"
                     /protein_id="HSR65222.1"
                     /translation="MSDAASRTARVQLPINLAWAKGAYTVTLHLGREARPARLALDTG
                     SSTLVVLPHAYDPAQDARHSPTAWAQEVRYGAGAWAGPVVRTDVHFDGAHGRLTLADV
                     QLSVAAANATDLHDADGLFGLAYAPLDTAHDFTGYFGERGIAPALTSPWPFARESADV
                     AAFGALLRAQPRVRLTPLFGALADAHAVANRFALLVRRALVHVLDDGAGDEAIAADPL
                     NQGLLILGGDTHDVHADDLHRDDVREVQVVHDLYYNVELVALQVGDGPRIAAPPLDAR
                     DVARGGSNAFVDTGCSFLVLEASLHRAVLAAFAAGDPGMPALVERSAQAFAQDRQGVP
                     NAEVDAFDWPALHFFLRAPGGGETRLTCPPAHYWQRNALRAGQACCLLMAQLPHFPKQ
                     SLLGLPLLAGHYVVFDRAAANGGVLRVATAHPPA"
BASE COUNT          209 a          564 c          632 g          194 t
ORIGIN      
        1 gcgatgccca ccccgcaccc gctggccttg tcctcgatca cccagtagcg gtgtcccggc
       61 gcttccctgc cgttgtggcg gcaggcgcgg ccgaagccgg ccgcggcggc gtccgccgac
      121 agcggcggca ggatgcgccg catgacggcc ggatcggtgt agaggtggca gaacagggcc
      181 tggtcccgtc cgtccagcaa ccgcaggcgc aggcgcggcg tttccagcgc gctcacgccg
      241 gcggatgcgc ggtggcgacg cgcagcacgc cgccgttcgc cgcggcgcgg tcgaagacga
      301 cgtagtgccc ggccagcaac ggcaggccga gcaggctctg cttggggaag tggggcagct
      361 gcgccatcag caggcagcag gcctgccccg cacgcagggc gttgcgctgc cagtagtgcg
      421 cgggcgggca ggtgaggcgg gtttcgccgc caccgggcgc gcgcaggaag aagtgcagcg
      481 cgggccagtc gaacgcgtcg acctcggcgt tcggcacgcc ctgccggtcc tgcgcgaagg
      541 cctgcgcgct gcgttcgacc agcgccggca tgccggggtc gccggcggcg aaggccgcga
      601 gcaccgcacg gtgcagcgag gcctcgagga ccaggaagct gcagccggtg tcgacgaagg
      661 cgttgctgcc gccgcgcgcg acatcccggg catcgagcgg cggcgcggcg atgcgcgggc
      721 cgtcgccgac ctgcagcgcg acgagttcga cgttgtagta caggtcgtgc accacctgca
      781 cttcgcgcac gtcgtcgcgg tgcaggtcgt cggcatgcac gtcgtgggtg tcgccgccga
      841 ggatgagcag gccctggttg agcgggtcgg cggcgatcgc ctcgtcgccg gcgccatcgt
      901 cgagcacgtg caccagcgcg cggcggacga ggagcgcgaa gcggttggcc acggcgtgcg
      961 cgtcggcgag cgcgccgaac agcggggtca ggcgcacgcg cggctgcgcg cgcagcagcg
     1021 cgccgaacgc ggcgacgtcg gcgctttcgc gtgcgaacgg ccacgggctg gtcagcgcgg
     1081 gcgcgatgcc gcgttcgccg aagtagcccg tgaagtcgtg cgcggtgtcg agcggcgcat
     1141 aggccagccc gaacaggcca tccgcgtcgt gcaggtcggt ggcgttcgcg gcggcgacgg
     1201 acagctgcac gtccgccagc gtgaggcgcc cgtgcgcgcc gtcgaaatgc acgtcggtgc
     1261 gcaccaccgg cccggcccac gcaccggcgc cgtaacgcac ttcctgcgcc cacgccgtcg
     1321 gcgaatggcg tgcgtcctgc gccgggtcgt aggcgtgcgg cagcacgacg agcgtgctgc
     1381 tgccggtgtc gagggccagc cgcgccgggc gcgcctcgcg cccgaggtgc agggtgacgg
     1441 tgtacgcgcc cttcgcccag gcgaggttga tcggcagctg cacgcgcgcc gtgcgcgagg
     1501 cggcgtcgct caaggcttgg ccccgcggcg ctcgcgcacc agcgactcga ccaccgacgg
     1561 atcggcaagc gtggaggtgt cgccgagctg ctcgggcgc
//
LOCUS       DATIQC010000301         1832 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_20742, whole genome shotgun sequence.
ACCESSION   DATIQC010000301 DATIQC010000000
VERSION     DATIQC010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20742"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..270)
                     /locus_tag="VLM17_06435"
     CDS             complement(<1..270)
                     /locus_tag="VLM17_06435"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HSR65223.1"
                     /translation="MPKITLLFTALQALLMLVLLARISRLRHGRRIGFGDGGDPQLGR
                     AIRVHGNFVEHVPFALLLLGLLELCGLPAAWLWSFGAALLLARLLH"
     gene            complement(279..1022)
                     /locus_tag="VLM17_06440"
     CDS             complement(279..1022)
                     /locus_tag="VLM17_06440"
                     /inference="COORDINATES: protein motif:HMM:NF019404.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM43 family protein"
                     /protein_id="HSR65224.1"
                     /translation="MRRLAASAGLLLLAGQLLVGMLRAQDAPGTLRFDPPPRDLDFGV
                     AARAAGLERRVEMLQWTRTAQGYARAWSDEPIDASRFAPGHANPVDWPLPARRWLARS
                     VTLDGRPLDPAVIAALGTWQDIRPSFDALPGNMAATFQPEGDGLGSADNPLDPQVGDL
                     RIRWRALALPPLQGRVVLRDGRWELAPDPGDEAGNGVRDGAGSVPRSVAAPARPLQRD
                     PGRTRWPWLLAALAGGLAAIFAARGRRKH"
     gene            complement(1022..>1832)
                     /locus_tag="VLM17_06445"
     CDS             complement(1022..>1832)
                     /locus_tag="VLM17_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR65225.1"
                     /translation="WAQWARPDEQNRIALACRALLASPLNGKTVLFETGIGAFFEPKL
                     RERYGVVEDRHVLLDSLRAAGFSHEDIDVVVLSHLHFDHAGGLLAEWREGEPPSLLFP
                     NATYVVSAGCWERALHPHARDRASFIPELPALLERSGRLEIVDGAYSRALGKTVRFHY
                     SDGHTPGLMLAEIVGPEHVDGEAHGGVVFCADLIPGRAWVHVPITMGYDRNAELLIDE
                     KREFLEDKLARNVHLFFTHDPECALAQVTRDPKGRFGTAHEVAELHARALD"
BASE COUNT          269 a          679 c          661 g          223 t
ORIGIN      
        1 atgcagcagc cgcgccagca acagggccgc gccgaagctc cacagccacg ccgccggcag
       61 tccgcacagc tcgagcaggc cgagcagcag cagcgcgaac ggcacgtgct cgacgaaatt
      121 gccgtgcacg cggatcgccc gccccagctg cggatcgcct ccgtcgccga agccgatccg
      181 gcgcccatgg cgcaggcgcg aaatgcgcgc cagcagcacg agcatgagca acgcttgcag
      241 cgcggtgaac agcagggtga tcttcggcat cgacaggctc agtgcttgcg gcgaccacgc
      301 gccgcgaaga tggccgccag gccgccggcc aacgcggcca gcagccacgg ccagcgtgta
      361 cggcccggat cgcgctgcag cgggcgcgcc ggcgcggcaa cggaccgcgg cacggaaccc
      421 gcgccatcgc gcacgccgtt cccggcctcg tcgcccggat ccggcgcgag ctcccagcgt
      481 ccgtcgcgca gcaccaccct gccctgcagc ggcggcaggg ccagcgcgcg ccagcggatg
      541 cgcaggtcgc cgacctgcgg gtcgagcgga ttgtcggcgc tgccgagccc atcgccttcc
      601 ggctggaagg tggcggccat gttgccgggc agcgcgtcga agctcggccg gatgtcctgc
      661 cacgtgccga gcgcggcgat gaccgctgga tcgagcgggc ggccatccag cgtgacgctg
      721 cgcgccagcc agcgccgggc gggcagcggc cagtccaccg gattggcatg gccgggcgcg
      781 aagcgcgagg catcgatcgg ctcgtcgctc cacgcgcgcg cataaccttg cgccgtgcgc
      841 gtccactgca gcatctcgac gcggcgttcc agtccggccg cgcgcgcggc cacgccgaaa
      901 tcgaggtcgc gcggcggcgg atcgaagcgc agcgtccccg gcgcgtcttg cgcgcggagc
      961 atgccgacga gcagctggcc ggcgagcagg agcaggccgg cggacgccgc cagccgccgc
     1021 atcagtccag cgcccgcgcg tgcagttcgg cgacctcgtg ggcggtgccg aaccgcccct
     1081 tcgggtcgcg ggtgacctgc gccagcgcgc attccggatc gtgggtgaag aacaggtgca
     1141 cgttgcgcgc gagcttgtcc tcgaggaact cgcgcttctc gtcgatcagc agctcggcgt
     1201 tgcggtcgta gcccatggtg atcggcacgt gcacccatgc gcgtcccggg atcaggtcgg
     1261 cgcagaacac cacgcccccg tgcgcctcgc cgtccacgtg ctccggcccg acgatctccg
     1321 ccagcatcag ccccggcgtg tgcccgtcgc tgtagtggaa gcgcaccgtc ttgccgaggg
     1381 cccgcgaata cgcgccgtcg acgatctcca ggcggccgct gcgctcgagc agcgcgggca
     1441 gttccgggat gaagctggcc cggtcgcgcg catgcgggtg cagcgcgcgt tcccagcagc
     1501 cggcgctgac gacgtaggtg gcgttgggga acagcagcga cggcggctcg ccctcccgcc
     1561 actcggccag caggccgccg gcgtggtcga agtgcaggtg cgacagcacg acgacgtcga
     1621 tgtcctcgtg cgagaacccc gccgcgcgca gcgaatcgag cagcacgtgg cggtcctcga
     1681 ccacgccgta gcgctcgcgc agcttcggtt cgaagaacgc gccgatgccg gtctcgaaca
     1741 gcacggtctt gccgttgagc gggctggcga gcagcgcgcg gcaggcgagc gcgatgcggt
     1801 tctgttcgtc gggccgcgcc cactgcgccc ac
//
LOCUS       DATIQC010000302         4081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_126298, whole genome shotgun sequence.
ACCESSION   DATIQC010000302 DATIQC010000000
VERSION     DATIQC010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4081
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126298"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..676
                     /locus_tag="VLM17_06450"
     CDS             <1..676
                     /locus_tag="VLM17_06450"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HSR65226.1"
                     /translation="AGTGRAREGGTAAVGLDLAAALRAPPLQLRAESPRIATFEGLLS
                     AEECRYVVALGTAHLQPARVLDPVTGESRLDPIRTSHDVRFAPVLEDFALRLLQWRMA
                     SAIGLDFTQAEALILLRYQPGQEYRPHRDYLSAASLARDRPEAGQRMATLCCYLADVE
                     AGGGTAFPEAGLVIEARAGRAVAFGNLDQAGRPDPRSLHAGLPVERGEKWLATLWLRQ
                     RRYRDF"
     gene            845..1945
                     /locus_tag="VLM17_06455"
     CDS             845..1945
                     /locus_tag="VLM17_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HSR65227.1"
                     /translation="MIFETLDTYGHEQVVFCHNKDAGLKAIIAIHNTVLGPALGGTRM
                     WPYKTEQDALNDVLRLSRGMTYKNAVAGLDIGGGKAVIIGDPATDKSEALFRAFGQFV
                     ESLGGRYITAEDVGIDVNDMEYVYRETEYVTGVHQVHGGSGDPSPFTAYGTLQGLMAT
                     LNKKYGDEEVGKYSYAVQGLGHVGMEFVKLLKERGAKIFVTDINKGLVDKAVSEYGAE
                     AVAPDDIYDVPADVYSPCALGGTVNEQTLPRLKMKVICGAANNQLANNAIGDEVVRRG
                     ILYAPDYAVNAGGVMNVALELDGYNRERAMRMMRTIYHNLTRIYEISDRDGIPTYRAA
                     DRLAEERISAIGKLKLPLGRAKPRFQGRIRGH"
     gene            2171..3328
                     /locus_tag="VLM17_06460"
     CDS             2171..3328
                     /locus_tag="VLM17_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007511919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HSR65228.1"
                     /translation="MRPFPLGEDLDALREAVRRFAEAEIAPRAAQIDHDNVFPQDLWA
                     KLGELGLLGMTVPGEYGGSDMGYLAHLVAMEEISRASGSVGLSYGAHSNLCVNNLYAN
                     GSEAQRRKYLPKLCSGEWKGALAMSEPGAGSDVVGSMSCRAELKGDVWVANGNKMWIT
                     NGPEADVLVVYMRTAGKDAGSRCMTAFLVEKGMKGFSTAQKLDKLGMRGSNTCELVFE
                     DCEIPAENVLGEVHHGVKVLMSGLNTERLVLTGGPLGLMQAALDLTLPYVRERRQFDA
                     PIGTFELMQAKVADMYTALQSSRAFAYQVARDYDAGHKSRVDAAACLLHASEASVQVG
                     LEAIQALGGNGYINEFPAGRILRDAKLYAIGAGTNEIRRMLIGRELFEGRD"
     gene            complement(3402..4076)
                     /locus_tag="VLM17_06465"
     CDS             complement(3402..4076)
                     /locus_tag="VLM17_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HSR65229.1"
                     /translation="MRTYAKTALCAGLIGTLLVGCASYTGQTNDPNDPNRTRRGALIG
                     AGIGAVAGLLSGGDAVERRQRALVGAGVGGLAGAGIGAYQDRQEAALRRQMAGTGVDV
                     VRQGDNITLNMPGNITFAFDSSNLSPQFYPVLDNVASTLTQYNQTMIEVAGHTDNVGT
                     DQYNQALSERRANAVAAYLGSKGVMQQRMMVVGAGETHPIAGNDTEAGRAQNRRVEIT
                     IVPVKS"
BASE COUNT          646 a         1409 c         1412 g          614 t
ORIGIN      
        1 cgccggcacg ggccgcgcgc gcgagggcgg caccgcagcc gtcggcctcg accttgcggc
       61 ggcgctgcgc gcgcccccgc tgcagctgcg cgccgaatcc ccgcgcatcg cgacgttcga
      121 ggggctgctc tccgcggagg aatgccggta cgtcgtcgcg ctgggaaccg cccacctgca
      181 gcccgcgcgc gtgctggatc cggtcaccgg cgaatcccgg ctggatccga tccgcaccag
      241 ccacgacgtg cggttcgccc cggtgctgga agacttcgcg ttgcgcctgc tgcagtggcg
      301 gatggcctcg gcgatcggcc ttgacttcac ccaagccgag gcgctgatcc tgctgcgcta
      361 ccagccgggc caggaatacc ggccgcatcg cgactatctt tccgccgcct cgctggcgcg
      421 cgaccggccc gaagcggggc agcgcatggc gacgctgtgc tgctatctcg ccgacgtcga
      481 ggccggcggt ggcaccgcct ttcccgaagc cggcctggtc atcgaggcgc gcgccggacg
      541 cgcggtcgcg ttcggcaacc tcgaccaggc gggccgtccg gacccgcgtt cgctgcacgc
      601 cggcctgccg gtcgagcgcg gggaaaaatg gctcgccacg ctgtggctgc gccagcggcg
      661 ctaccgcgac ttctgaggcg ccacgcccgg cacgggcctc gccccggcga ttcgactaga
      721 atgtcgcgcc tgccgcggca gcccgtcccg ccaattcagc tgcaggtcgc agccctttca
      781 acgacttatc caaccttgtt ggcgtggttt gccatgtgca gaccggcgcc gaccggagca
      841 ttcgatgatc ttcgagaccc tggataccta cggccacgag caggtcgtgt tctgccacaa
      901 caaggacgcg ggcctgaagg ccatcatcgc gatccacaac accgtgctcg gccccgcgct
      961 gggcggcacg cgcatgtggc cgtacaagac cgagcaggac gcgctcaacg acgtgctgcg
     1021 cctgtcgcgc ggcatgacct acaagaacgc ggtcgcgggc ctcgacatcg gcggcggcaa
     1081 ggcggtgatc atcggtgacc cggccaccga caagtcggag gcgctgttcc gcgcgttcgg
     1141 ccagttcgtc gaatcgctgg gcgggcgcta catcaccgcc gaggacgtcg gcatcgacgt
     1201 caacgacatg gaatacgtgt accgcgagac cgagtacgtc accggcgtgc accaggtgca
     1261 cggcggttcg ggcgacccct cgccgttcac cgcctacggc acccttcagg gcctgatggc
     1321 gacgctcaac aagaagtacg gcgacgagga agtcggcaag tattcctacg cggtgcaggg
     1381 cctgggccac gtcggcatgg agttcgtgaa gctgctcaag gaacgcggcg cgaagatctt
     1441 cgtcaccgac atcaacaagg gcctggtcga caaggcggtg tcggagtacg gcgccgaagc
     1501 cgtggccccg gacgacatct acgacgtgcc ggccgacgtg tactcgccct gtgcgctcgg
     1561 cggcaccgtc aacgagcaga ccctgccgcg cctgaagatg aaggtgatct gcggcgccgc
     1621 caacaaccag ttggccaaca acgccatcgg cgacgaggtc gtgcgccgcg gcatcctgta
     1681 cgcgccggac tacgcggtca acgcgggcgg cgtgatgaac gtggcgctgg agctcgacgg
     1741 ctacaaccgc gagcgcgcga tgcgcatgat gcggacgatc taccacaacc tcacccgcat
     1801 ctacgagatc agcgaccgcg acggcattcc gacctaccgc gccgccgacc gcctggccga
     1861 ggagcgcatc agcgcgatcg gcaagctgaa gctgccgctg ggccgcgcca agccgcgctt
     1921 ccagggtcgc atcagggggc attgagcaag gcacgcctcg gtctatccca aagtcttgca
     1981 agcaaaactt cgggccccgc tccgtgcctc caaatcccag ccgctgccgc ggcgcccctt
     2041 taccaaagag gctcgggcct caaggaagct ctttcgcgag aacgcccggc cgcccgggcg
     2101 ttcttttttg gcgccgcggg gcgaaccgat agaattgaac gtctggccat tttcgaagta
     2161 ggcattcccc atgcgcccgt tcccccttgg tgaagacctc gacgcgctgc gcgaggccgt
     2221 gcgccgcttc gcggaggcgg agatcgcgcc gcgcgcggcg cagatcgacc acgacaacgt
     2281 cttcccgcag gacctgtggg ccaagctcgg cgaactgggc ctgctgggca tgacggtgcc
     2341 gggcgaatac ggcggcagcg acatgggcta cctggcccac ctggtggcga tggaggagat
     2401 ctcgcgggcg tccggttcgg tgggcctctc ctacggcgcg cattcgaacc tgtgcgtcaa
     2461 caacctgtac gccaacggca gcgaggccca gcgccggaaa tacctgccga agctctgcag
     2521 cggcgagtgg aagggcgcgc tggcgatgag cgagccgggc gcgggttcgg acgtggtcgg
     2581 ctcgatgtcg tgccgtgccg aactcaaggg cgacgtgtgg gtcgccaacg gcaacaagat
     2641 gtggatcacc aacggccccg aggcggacgt gctggtggtc tacatgcgca ccgccggcaa
     2701 ggacgcgggc agccggtgca tgaccgcctt cctcgtcgag aagggcatga agggcttctc
     2761 gacggcccag aagctcgaca agctcggcat gcgcggctcc aacacctgcg aactggtgtt
     2821 cgaggactgc gagatcccgg cggagaacgt gctgggcgag gtgcaccacg gcgtcaaggt
     2881 gctgatgtcc ggcctgaaca ccgagcgcct ggtcctgacc ggcggcccgc tcggcctgat
     2941 gcaggccgcg ctcgacctca ccctgcccta cgtgcgcgag cgccggcagt tcgacgcgcc
     3001 gatcggcacc ttcgagctga tgcaggccaa ggtcgccgac atgtacaccg cgctgcagtc
     3061 cagccgcgcc ttcgcctacc aggtggcgcg cgactacgac gccgggcaca agtcgcgcgt
     3121 ggatgccgcg gcctgcctgc tgcacgcgag cgaggcgtcg gtgcaggtgg gtctcgaggc
     3181 gatccaggcg ctcggcggca acggctacat caacgagttc ccggccgggc ggatcctgcg
     3241 cgacgccaag ctctacgcga tcggcgcggg caccaacgag atccggcgca tgctgatcgg
     3301 acgggaactg ttcgaggggc gcgactgacc accccgccgg cgacgggaca ggaaaaagcc
     3361 ggcgcgaggc cggctttttc gttttccgcg gcgacgatcg gtcaggactt gaccggcacg
     3421 atggtgatct ccacccgccg gttctgcgcc ctgcccgcct cggtgtcgtt gccggcgatc
     3481 ggatgcgtct cgcccgcgcc gacgaccatc atgcgctgct gcatcacgcc cttgctgccg
     3541 aggtaggcgg ccacggcgtt cgcgcggcgc tccgacaggg cctggttgta ctggtcggtg
     3601 ccgacgttgt cggtgtggcc ggcgacctcg atcatcgtct ggttgtactg cgtgagcgtg
     3661 ctggcgacgt tgtcgagcac cgggtagaac tgcggcgaca ggttgctgct gtcgaaggcg
     3721 aaggtgatgt tgcccggcat gttgagggtg atgttgtccc cctggcggac cacgtcgacg
     3781 ccggtgccgg ccatctgccg gcgcagcgcg gcttcctggc ggtcctggta cgcgccgatg
     3841 ccggcaccgg cgaggccgcc gacgccggcg ccgaccagcg cccgctggcg gcgttcgacc
     3901 gcgtcgccac cgctgagcag gccggcgacc gcgccgatgc cggcgccgat cagcgcgccg
     3961 cggcgggtgc ggttggggtc gttcggatca ttggtctggc cggtgtagct cgcgcaaccg
     4021 accagcagcg tgccgatgag gccggcgcaa agggccgtct tcgcatacgt gcgcatgggc
     4081 g
//
LOCUS       DATIQC010000303         2790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_338387, whole genome shotgun sequence.
ACCESSION   DATIQC010000303 DATIQC010000000
VERSION     DATIQC010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338387"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..511)
                     /locus_tag="VLM17_06470"
     CDS             complement(<1..511)
                     /locus_tag="VLM17_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HSR65230.1"
                     /translation="MRNYPPVSLIGAPTDIGAGHLGARMGPEALRIAGLADALATRGI
                     DVTDLGNLDGPRNPWQPPVHGYRHLEEVVAWNRAVMDAVGGQLAQGRLPVMMGGDHCL
                     GIGSITAVARHCRASGKRLRVLWLDAHADFNTSDVTPSGNVHGMPVACLCGIGPEPLT
                     RLGGDAPAVQ"
     gene            complement(525..600)
                     /locus_tag="VLM17_06475"
     tRNA            complement(525..600)
                     /locus_tag="VLM17_06475"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(565..567),aa:Thr,seq:tgt)
     gene            complement(632..1300)
                     /locus_tag="VLM17_06480"
     CDS             complement(632..1300)
                     /locus_tag="VLM17_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSR65231.1"
                     /translation="MFARALIVLLAVANLGVALWWALQPAPSAHPVAAPSAEDAGVPR
                     LRLLHEPAAPAAPASLSAQAQGTPRCYAFGPFDAAGYAAARARLQPLAQDLQLRADEA
                     AAVRGWRVWLPSQPDRAAANALAARIAAAGFRDLFVMPDGGEPNAIALGRFGSEASAG
                     ARAQALQAAGFPARAEPLLSPAAPRWLDVRVDARFDADAQRLAVAAPQAQPLDCTRLP
                     AAAR"
     gene            complement(1310..2053)
                     /locus_tag="VLM17_06485"
     CDS             complement(1310..2053)
                     /locus_tag="VLM17_06485"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HSR65232.1"
                     /translation="MSAWLFDLGNTRLKCTPLRDAGRGEATRVAHDGHGLPERWDAGL
                     PAQVDEAVLASVAAPALTAQLLEALAARCARISVARTTRAFAGVRIAYAEPRRLGVDR
                     FLALLAARARGAHAWLVVGVGTALTIDLLDRDGLHLGGRIAPSPTLMREALHARAAQL
                     PATGGAYAEFAADTGDALASGCEGAALALVERSLAQAASALPGAPPTLLLHGGGAQAL
                     RARLPASAFAPDLVLEGLACWARASGSAA"
     gene            complement(2050..>2790)
                     /locus_tag="VLM17_06490"
     CDS             complement(2050..>2790)
                     /locus_tag="VLM17_06490"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HSR65233.1"
                     /translation="WTTDSTNTRLLERPTPDEGVAVLLAERQTGGRGRRGRAWASPLA
                     ANIYLSLARSFRGGLARLPGLSLVAGVATAEALHALGFTGARLKWPNDLVVPEGRGMR
                     KLGGLLVEGGGEHAGPARAVIGLGLNVRMPDAFAAAIDQPWIDLATLAGAPVSRNRVV
                     AALLAHWLPALAQFDAEGLDGFLPRYAALDALAGREVAVDTTGGTRSGIALGLAADGA
                     LRVRFAEGEQRVHSGEVSVRATTARETA"
BASE COUNT          353 a         1053 c         1081 g          303 t
ORIGIN      
        1 gctgcaccgc cggcgcgtcg ccgccgaggc gggtgagcgg ctccgggccg atcccgcaca
       61 ggcacgcaac cggcatgcca tgcacgttgc ccgagggcgt gacgtcggag gtgttgaagt
      121 cggcgtgcgc gtccagccac agcacccgca ggcgcttgcc gctcgcgcgg cagtggcggg
      181 cgaccgcggt gatcgaaccg atgccgaggc agtggtcgcc gcccatcatc accggcaggc
      241 ggccctgcgc gagctggccg ccgaccgcgt ccatcaccgc gcggttccag gcgaccactt
      301 cctcgaggtg gcgatagccg tgcaccggcg gctgccaggg attgcgcgga ccgtcgaggt
      361 tgcccagatc ggtgacgtcg atgccgcgcg tggcgagcgc gtccgccagg ccggcgatgc
      421 gcagcgcttc cggtcccatg cgcgcgccga gatggccggc gccgatgtcg gtcggtgcgc
      481 cgatcagcga caccggtggg tagttgcgca tgctggctcc agagtggtgc cgcttgtccg
      541 aatcgaacgg acgaccgctc gcttacaagg cgagtgctct accgactgag ctaaagcggc
      601 gaaacggtgc gcgcggggac gcggcgcgat tctagcgcgc ggccgccggc aggcgcgtgc
      661 agtcgagggg ctgcgcctgc ggcgcggcca ccgccaggcg ctgggcgtcg gcgtcgaagc
      721 gcgcgtccac gcgcacgtcc agccagcgcg gcgcggcggg ggacagcagt ggctcggcac
      781 gggcgggaaa accggcggcc tgcagcgcct gcgcgcgcgc gcccgcggac gcctcgctgc
      841 cgaagcgacc gagcgcgatc gcgttcggct cgccgccgtc gggcatcacg aacaaatccc
      901 tgaagcccgc ggcggcgatg cgcgcggcga gcgcgttcgc cgccgcgcgg tcgggctgcg
      961 acggcagcca cacgcgccag ccgcgcaccg cggcggcttc gtcggcgcgc agctgcaggt
     1021 cctgcgccag cggctgcagg cgcgcgcgcg cggcggcgta gcccgcggcg tcgaacggcc
     1081 cgaacgcgta gcagcgcggc gtcccctgcg cctgcgccga caggctggct ggcgccgcgg
     1141 gcgccgctgg ttcgtgcagc aggcgcaggc gcggcacgcc ggcgtcttcc gcgctggggg
     1201 cggcgaccgg gtgcgccgac ggcgccggct gcagcgccca ccacagcgcc acgccgaggt
     1261 tggccaccgc cagcaggacg atcagggcgc gcgcgaacat gcggccattc taagcagcgc
     1321 tgccgctggc gcgcgcccag caggcgaggc cttcgagcac caggtccggc gcgaaggccg
     1381 acgccggcaa ccgcgcgcgc agcgcctgcg cgccgccgcc gtgcagcagc agcgtcggcg
     1441 gtgcgccagg cagcgcggac gcagcctgcg ccaggctgcg ctcgacgagc gcgagcgccg
     1501 cgccttcgca ccccgaggcg agcgcatcgc cggtatcggc ggcgaactcg gcgtaggcac
     1561 cgccggttgc cggcagctgc gccgcgcgcg catgcagcgc ctcgcgcatc agcgtcggcg
     1621 acggcgcgat ccggccgccc agatgcaggc cgtcgcgatc gagcaggtcg atggtcagcg
     1681 cggtgccgac gccgacgacc agccaggcat gcgcgccgcg tgcccgcgcg gcgagcaggg
     1741 cgaggaagcg gtcgacgccg agccggcgcg gttcggcata ggcgatgcgc acgccggcga
     1801 aggcgcgggt ggtgcgcgcg accgagatcc gcgcgcagcg cgccgcgagt gcttcgagca
     1861 gctgcgcggt gagcgcgggc gcggcgacgc tggcgagcac cgcttcgtcg acctgcgccg
     1921 gcaggcccgc gtcccatcgc tccggcaacc cgtgcccatc gtgggcgacg cgcgtcgcct
     1981 cgccgcggcc ggcgtcccgc agcggcgtgc atttcagccg cgtgttgccg aggtcgaaca
     2041 gccaggcgct catgcggtct cccgcgccgt cgtcgcgcgc acgctgactt cgcccgagtg
     2101 cacgcgctgt tcgccttcgg cgaagcggac ccgcaaggcg ccgtcggcgg cgagcccgag
     2161 cgcgatgccg ctgcgcgtgc cgcccgtggt gtccaccgcc acctcgcgcc cggccagcgc
     2221 gtcgagcgcg gcgtagcgcg gcaggaaacc atcgaggcct tccgcgtcga actgcgccag
     2281 cgccggcagc cagtgcgcga gcagcgcggc gacgacgcgg ttgcgcgaca ccggcgcccc
     2341 ggcgagggtg gccaggtcga tccagggctg gtcgatggcc gcggcgaacg catccggcat
     2401 gcgcacgttg agcccgagcc cgatcaccgc gcgcgccggc ccggcgtgtt cgccgccgcc
     2461 ttcgaccagc aggccgccga gcttgcgcat gccgcgcccc tccggcacga ccaggtcgtt
     2521 cggccacttc aaccgggcgc cggtgaagcc gagcgcgtgc agggcctcgg cggtggcgac
     2581 gccggcgacc aggctcagcc ccggcagccg cgccagcccg ccgcggaagc tgcgcgccag
     2641 cgagaggtag atgttggcgg cgagcggcga tgcccaggcg cgcccgcgcc ggccgcgccc
     2701 gccggtctgg cgctcggcca gcaggacggc caccccttcg tcgggcgtcg ggcgctcgag
     2761 caggcgggta ttggtcgagt cggtcgtcca
//
LOCUS       DATIQC010000304         1771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_409426, whole genome shotgun sequence.
ACCESSION   DATIQC010000304 DATIQC010000000
VERSION     DATIQC010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409426"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /gene="trpC"
                     /locus_tag="VLM17_06495"
     CDS             complement(<1..737)
                     /gene="trpC"
                     /locus_tag="VLM17_06495"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012481437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HSR65234.1"
                     /translation="MSDVLQRILARKVEEVAERRARVPLDLLRARADAASAPRGFAAA
                     LAAEAATGRPAVIAEVKKASPSKGVIRADFDPAAIARSYAVAGAACLSVLTDADFFQG
                     SDACLQEARAACDLPVLRKEFIIDGYQVVEARALGADCILLIVAALDDARLRGFAALA
                     LELGMDVLLEVHDGDELQRALHVGDADGRVLIGVNNRDLRTFAVSLDTTLQLRPRVPA
                     GRRLVAESGILAPADVARLRAAGIDAFL"
     gene            complement(734..1081)
                     /locus_tag="VLM17_06500"
     CDS             complement(734..1081)
                     /locus_tag="VLM17_06500"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HSR65235.1"
                     /translation="MSGTGFARLPQPPYHAVIFSSRRRGDERDGYAEMSARMLELVAE
                     QPGFLGVESTRDADGFGITVAYFDGEDAILAWRRNAEHAAARERGRAEWYDHYEIRVA
                     RVERAYGWDRGAP"
     gene            complement(1078..>1771)
                     /gene="trpD"
                     /locus_tag="VLM17_06505"
     CDS             complement(1078..>1771)
                     /gene="trpD"
                     /locus_tag="VLM17_06505"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008216812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HSR65236.1"
                     /translation="SVSSSSGSADVLEALGVAIELQPGQVAACIERTGIGFMYAPVHH
                     PAMKVVAPVRREMGVRTLFNILGPLTNPAGAPNILMGVFHPDLVGIQVRVLQELGAER
                     ALVVWGRDGMDEFSLGAATLVGELRNGVVREYEVHPEDFGIAMAASRNLRVADAHESK
                     AMLLAALSNEPGIPRDIVVLNAGAALYAAGVADSIDVGLVRAREAIASGAARERLDRF
                     VATTRELAGAGA"
BASE COUNT          239 a          676 c          635 g          221 t
ORIGIN      
        1 aggaaggcat cgatgccggc cgcgcgcagc cgcgccacgt cggccggcgc caggatgccg
       61 ctctcggcca ccagccggcg gccggcgggc acgcgcggcc gcagctgcag ggtggtgtcg
      121 agcgacaccg cgaaggtgcg caggtcgcgg ttgttgacgc cgatcagcac gcggccgtcg
      181 gcgtcgccca cgtgcagggc gcgctggagc tcgtcgccgt cgtgcacctc gagcagcacg
      241 tccatcccca gttcgagcgc gagcgcggcg aacccgcgca gccgcgcgtc gtccagcgcg
      301 gcgacgatca gcaggatgca gtcggcgccc agcgcgcgcg cctcgacgac ctggtagccg
      361 tcgatgatga actccttgcg cagcaccggc aggtcgcagg ccgcgcgcgc ctcctgcagg
      421 caggcatcgc tgccctggaa gaagtcggcg tcggtcagca ccgacaggca ggccgcgccg
      481 gcgacggcgt agctgcgcgc gatcgcggcc gggtcgaagt cggcgcggat cacgcccttc
      541 gacgggctgg ccttcttgac ctcggcgatc accgccggcc ggcccgtcgc cgcctcggcc
      601 gcgagcgcag cggcgaagcc gcgcggcgcg gacgccgcgt ccgcacgcgc ccgcaacagg
      661 tccagcggaa cgcgcgcgcg gcgttcggcg acttcctcga ccttgcgcgc gaggatgcgc
      721 tgcagcacgt cgctcatggc gcgccccggt cccagccata ggcgcgttcg accctggcca
      781 cgcggatctc gtagtggtcg taccactcgg cgcgcccgcg ctcgcgcgcc gcggcgtgct
      841 cggcgttgcg gcgccaggcg aggatcgcgt cctcgccgtc gaagtaggcg acggtgatgc
      901 cgaagccgtc cgcgtcgcgg gtggattcga cgccgaggaa gcccggctgc tccgccacca
      961 gttcgagcat gcgcgcggac atctccgcat agccgtcgcg ctcgtcgccg cgccggcgcg
     1021 agctgaagat caccgcgtgg tacggcggct gcggcagccg cgcgaagccg gtcccgctca
     1081 tgcccccgcc cccgccagct cgcgggtggt ggcgacgaag cggtccaggc gctcgcgcgc
     1141 cgcgcccgag gcgatggcct cgcgcgcccg gaccagcccg acgtcgatgc tgtcggccac
     1201 cccggccgcg tacagcgccg ccccggcatt gagcaccacg atgtcgcggg ggatgccggg
     1261 ctcgttcgac agcgcggcca gcagcatcgc cttcgattcg tgcgcgtcgg cgacccgcag
     1321 gttgcgcgac gccgccatcg cgatgccgaa atcctccggg tgcacctcgt attcccgcac
     1381 cacgccgttg cggagttcgc ccaccagggt cgccgcgccg agcgagaact cgtccatgcc
     1441 gtcacgcccc cacaccacca gcgcgcgctc ggcgccgagt tcctgcagca cgcgcacctg
     1501 gatgccgacg aggtcggggt ggaagacgcc catcaggatg ttgggcgcgc cggccggatt
     1561 ggtcagcgga ccgaggatgt tgaacagggt gcgcacgccc atctcgcgcc gcaccggcgc
     1621 gacgaccttc atcgccggat ggtgcaccgg cgcgtacatg aagccgatgc ccgtgcgttc
     1681 gatgcaggcg gccacctgcc cgggctgcag ctcgatcgcc acgcccagcg cctccagcac
     1741 gtcggcgctg ccggagctgg acgagacgct g
//
LOCUS       DATIQC010000305         2323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_197876, whole genome shotgun sequence.
ACCESSION   DATIQC010000305 DATIQC010000000
VERSION     DATIQC010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_197876"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..134)
                     /locus_tag="VLM17_06510"
     CDS             complement(<1..134)
                     /locus_tag="VLM17_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HSR65237.1"
                     /translation="MAGLRLIVGLGNPGPEHLRTRHNAGFWFVDALADRLGGRFGLES
                     "
     gene            complement(180..809)
                     /locus_tag="VLM17_06515"
     CDS             complement(180..809)
                     /locus_tag="VLM17_06515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HSR65238.1"
                     /translation="MATEHSIRATARNDEGKGASRRLRRAAQIPAIVYGGTAAPKSIQ
                     LEHEKTWLASQNEWFYSSILSLDIDGQVESVLLRDVQRHPYKQIIMHLDFQRVDANQA
                     LRAKVPLHFANQEGSPAGKTAGIVITHEVNEVAISCLPKDLPEFIEVDLKDLKPGDTI
                     HLSQIKLPAGVEVPELKLGADHDVAVVIARHARAEAEEGAAEGGETPAA"
     gene            complement(891..1850)
                     /locus_tag="VLM17_06520"
     CDS             complement(891..1850)
                     /locus_tag="VLM17_06520"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HSR65239.1"
                     /translation="MKDERNLLVFTGNANRPLAEAVCRELGIRPGKALVGRFSDGEVQ
                     VEIEENVRGQDVFVIQPTCAPSAENLVELLVLIDALKRASATSVTAVVPYFGYARQDR
                     RPRSARVPITAKVAAQMFNTVHTDRVLTVDLHADQIQGFFDIPVDNVYASPLLLADIW
                     RAHGTDNVIVVSPDVGGVVRARALAKRLDDADLAIIDKRRPKANVATVMNIIGDVAGK
                     VCVLVDDIVDTAGTLCAAAAALKAQGAVKVVAYCTHPVLSGAAIDNLDKSALDELVVT
                     DTIPLSARAKACGRIRQLSVAELLAETIRLIAFGESVSSLYVD"
     gene            complement(1916..1992)
                     /locus_tag="VLM17_06525"
     tRNA            complement(1916..1992)
                     /locus_tag="VLM17_06525"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1956..1958),aa:Gln,seq:ttg)
     gene            complement(1999..>2323)
                     /locus_tag="VLM17_06530"
     CDS             complement(1999..>2323)
                     /locus_tag="VLM17_06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65240.1"
                     /translation="PATMADFVSGTPLGNCFEPVLRRREPAVEAAFAALARVGSPRLT
                     GTGSGCFVEFADRESAEAALAQLPRGLTAWVAAGAARSPLHAALGAWTSGMEGQPPGP
                     ARGQP"
BASE COUNT          314 a          787 c          849 g          373 t
ORIGIN      
        1 ttggattcca gcccgaagcg gccgccgagg cggtcagcca aggcgtccac aaaccagaac
       61 ccggcgttgt gccgggtccg gaggtgttcg gggccgggat tgcccagccc cacgatcagg
      121 cgcaggcctg ccatgcgtcg gtcggccgcc acgcccggag gcgcggcggc ccgtcaggct
      181 caggcggccg gggtctcgcc gccctcggcg gcgccttcct ccgcctcggc gcgggcatgg
      241 cgcgcgatca ccaccgcgac gtcgtggtcg gcgcccagct tgagctccgg cacctcgacg
      301 cccgccggca gcttgatctg cgacaggtgg atggtgtcgc ccggcttcag gtccttgagg
      361 tcgacctcga tgaactccgg caggtccttc ggcaggcagc tgatcgcgac ttcgttcacc
      421 tcgtgggtga tgacgatgcc cgcggtcttg ccggccggcg agccttcctg gttggcgaag
      481 tgcagcggca ccttcgcgcg cagcgcctgg ttggcgtcca cgcgctggaa gtccaggtgc
      541 atgatgatct gcttgtacgg gtggcgctgg acgtcgcgca gcagcacgct ctcgacctgg
      601 ccgtcgatgt cgaggctcag gatcgacgag tagaaccact cgttctggct ggcgagccag
      661 gtcttctcgt gctcgagctg gatgctcttg ggcgcggcgg tgccgccgta gacgatcgcc
      721 gggatctgcg ccgcgcgacg caggcggcgg ctcgcaccct tgccttcgtc gttgcgggcg
      781 gtggcccgga tggaatgttc ggtagccatt gttgcgttct cacttcgttg cgatggaacc
      841 gcctcgcggc ggccgggttc gctcacccgc gaccaggtga gcgagggatg tcagtccacg
      901 tacagcgaac tgacggattc tccgaaggcg atgaggcgga tggtttccgc cagcagttcg
      961 gcgacgctga gctggcggat gcggccgcac gccttcgccc gcgccgagag cgggatggtg
     1021 tcggtcacca ccagttcgtc gagcgcggac ttgtcgaggt tgtcgatcgc cgcgcccgac
     1081 agcaccgggt gcgtgcagta ggcgacgacc ttgaccgcgc cctgcgcctt gagcgcggcg
     1141 gcggcggcgc acagcgtgcc ggcggtgtcg acgatgtcgt ctaccagcac gcagaccttg
     1201 ccggcgacgt cgccgatgat gttcatcacc gtggcgacgt tggccttcgg gcggcgcttg
     1261 tcgatgatcg cgaggtcggc gtcgtcgagg cgcttggcca gcgcgcgcgc gcgcaccacg
     1321 ccgccgacgt cgggcgacac cacgatcacg ttgtcggtgc cgtgcgcgcg ccagatgtcg
     1381 gcgagcagca gcggcgaggc gtacacgttg tcgaccggga tgtcgaagaa gccctggatc
     1441 tggtcggcgt gcaggtcgac cgtgagcacg cggtcggtat gcacggtgtt gaacatctgc
     1501 gcggcgacct tggcggtgat cggcacgcgc gccgagcgcg ggcggcgatc ctgccgcgcg
     1561 tagccgaagt acggcaccac cgcggtcacg ctggtggccg aggcgcgctt gagcgcgtcg
     1621 atcagcacca gcagctcgac caggttctcg gcgctcgggg cgcaggtcgg ctggatcacg
     1681 aacacgtcct ggccgcggac gttctcctcg atctcgacct gcacctcgcc gtcggagaag
     1741 cgcccgacca gcgccttgcc cgggcggatg ccgagttcac ggcacaccgc ctcggccagc
     1801 ggccggttgg cgttgccggt gaagaccagc aggttgcgtt cgtccttcac tgtcattggc
     1861 cgcgtcgccg gttgtgctgg tggatgtcgt gctgtggtgg agcgcagggc gcggatggca
     1921 ggggcggtag gattcgaacc tacgaatgcc gggatcaaaa cccggtgcct tgggccactt
     1981 ggcgacgccc ctgtggatct agggctggcc gcgggccgga cccggcggtt gcccctccat
     2041 cccggaagtc cacgccccga gcgccgcgtg cagcggcgaa cgcgccgcgc ccgccgccac
     2101 ccaggccgtg aggccccgcg gcaactgcgc cagcgctgcc tcggcggact cgcggtcggc
     2161 gaattcgacg aagcagccgc tgcccgtgcc ggtcaagcgc ggcgagccga cccgcgccag
     2221 cgcggcgaac gcggcctcga cggccggttc gcggcggcgc agcaccggct cgaagcaatt
     2281 gccgagcggg gtacccgaca cgaagtcggc cattgtcgcg ggc
//
LOCUS       DATIQC010000306         1787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_91718, whole genome shotgun sequence.
ACCESSION   DATIQC010000306 DATIQC010000000
VERSION     DATIQC010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91718"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..779)
                     /gene="cheB"
                     /locus_tag="VLM17_06535"
     CDS             complement(<1..779)
                     /gene="cheB"
                     /locus_tag="VLM17_06535"
                     /EC_number="3.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005409510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0008984 - protein-glutamate methylesterase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis-specific protein-glutamate
                     methyltransferase CheB"
                     /protein_id="HSR65241.1"
                     /translation="MNARPSNAPIKVLVVDDSALVRQLMSEILASDPGIRVVGTASDP
                     YIAREKIKQLAPDVITLDVEMPRMDGLTFLQNLMRLRPMPVVMVSTLTEAGAQVTLDA
                     LALGAVDFVAKPRLDVARGLGAYAADLIEKVRTAARARVAALAGAPAHQAPSTPIAYR
                     TTDRLLAIGASCGGTEAIRAVLAQLPADAPATVIAQHIPGSFSGAFAERLDRHCRVTV
                     REVREEQPLLAGHAYVAPGGRHLRVFRSGARWRCRLGDDAPV"
     gene            complement(824..1411)
                     /gene="cheD"
                     /locus_tag="VLM17_06540"
     CDS             complement(824..1411)
                     /gene="cheD"
                     /locus_tag="VLM17_06540"
                     /EC_number="3.5.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050568 - protein-glutamine glutaminase
                     activity [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemoreceptor glutamine deamidase CheD"
                     /protein_id="HSR65242.1"
                     /translation="MSAAAPLATPAPGRYFDAALQVEALKLLPADYATSDEPIALVTL
                     LGSCVAACLWDPLLGIGGMNHFMLPDGDGSCARYGANAMELLINDLLKRGARRARLQA
                     KAFGGGNVLRGFADPVGSRNARFILDYLAAERIPLVAQDLGDIHPRKIAFFPQTGRAL
                     VRRLPATRERELADVERAYHERLSRAPASGSVELF"
     gene            complement(1408..>1787)
                     /locus_tag="VLM17_06545"
     CDS             complement(1408..>1787)
                     /locus_tag="VLM17_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005413235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HSR65243.1"
                     /translation="QGVYAIERLEAVSPERRRRFFQRGSGANAGLCRVKPALQALVSF
                     RPLNLLDADYGLRGGFAAVFCRNVMIYFDKPTQREVLSRVVPLLAPGAPLFAGHSESF
                     THAADLVDSCGRTTYRAVGRGGR"
BASE COUNT          243 a          617 c          698 g          229 t
ORIGIN      
        1 accggcgcgt cgtcgccgag ccggcaacgc cagcgggcgc cgctgcggaa cacgcgcagg
       61 tggcggccgc ccggcgcgac gtaggcatgg ccggcgagca gcggctgctc ctcgcgcacc
      121 tcgcgtacgg tcacccggca atggcggtcc aggcgctcgg cgaaggcccc gctgaagctg
      181 ccggggatgt gctgcgcgat caccgtcgcc ggcgcgtcgg ccggcagctg cgcgagcacc
      241 gcgcggatcg cctcggtgcc gccgcaggat gcaccgatcg cgagcaggcg gtcggtggtg
      301 cggtaggcga tcggcgtgga cggcgcctgg tgcgcgggcg cgcccgccag cgcggcgacg
      361 cgcgcgcgcg cggcggtgcg caccttctcg atcaggtccg ccgcgtacgc cccgagcccg
      421 cgcgcgacgt cgagccgggg cttggcgacg aagtcgaccg cgccgagcgc gagcgcgtcc
      481 agggtcacct gggcgccggc ctcggtgagc gtggagacca tcaccaccgg catcggccgc
      541 agccgcatca ggttctgcag gaaggtcagg ccgtccatgc gcggcatctc gacgtcgagg
      601 gtgatcacgt cgggcgcgag ctgcttgatc ttctcgcgcg cgatgtacgg atcggacgcg
      661 gtgccgacca cccggatgcc cgggtcgctc gcgaggatct cgctcatcag ctgccgcacg
      721 agcgccgagt cgtcgacgac caggaccttg atgggcgcgt tggacgggcg ggcgttcatt
      781 cggcttcgga tcgcgggccg cgtgatgcgg ccctggtgcg tgctcagaac agttccacgc
      841 tgccgctcgc cggcgcgcgc gacaggcgct cgtggtaggc gcgctcgaca tcggcgagct
      901 cgcgttcgcg ggtggcgggc aggcggcgca ccagcgcgcg accggtctgc gggaagaagg
      961 cgatcttgcg cggatggatg tcgccgaggt cctgggcgac gagcgggatg cgctcggcgg
     1021 cgaggtagtc gaggatgaag cgggcattgc gcgaaccgac cgggtcggcg aagccgcgca
     1081 gcacgttgcc gccgccgaac gccttggcct gcagccgcgc gcgccgcgcg ccgcgcttga
     1141 gcaggtcgtt gatcagcagt tccatcgcgt tggcgccgta gcgcgcgcag ctgccgtcgc
     1201 cgtcgggcag catgaagtgg ttcatgccgc cgatgccgag cagcgggtcc cacaggcagg
     1261 cggcgacgca ggaaccgagc agggtgacca gcgcgatggg ttcgtcgctg gtcgcgtagt
     1321 cggccggcag cagcttgagc gcctcgacct gcagcgcggc gtcgaaatag cgcccgggtg
     1381 cgggggtggc gagcggggcg gcggcgctca tcgcccgccc cggccgaccg cgcggtaggt
     1441 ggtgcggccg caggagtcga ccaggtcggc ggcatgggtg aagctttccg aatgccccgc
     1501 gaacagcggc gcccccggcg ccagcaacgg caccacgcgc gacagcacct cgcgctgggt
     1561 cggcttgtcg aagtagatca tcacgttgcg gcagaacacc gcggcgaagc cgccgcgcag
     1621 gccgtaatcg gcgtcgagca ggttgagcgg gcggaagctg accagcgcct gcagcgccgg
     1681 cttgacccgg cacaggccgg cgttcgcgcc gctgccgcgc tggaagaagc gccggcgccg
     1741 ttccggcgac accgcctcga ggcgttcgat cgcgtatacg ccctgcg
//
LOCUS       DATIQC010000307         1571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_409527, whole genome shotgun sequence.
ACCESSION   DATIQC010000307 DATIQC010000000
VERSION     DATIQC010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409527"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..849
                     /gene="der"
                     /locus_tag="VLM17_06550"
     CDS             <1..849
                     /gene="der"
                     /locus_tag="VLM17_06550"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016904421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HSR65244.1"
                     /translation="GRPNVGKSTLVNRLLGEERMIASDVPGTTRDSIAVDLERDGRKY
                     RLVDTAGLRRRSKVEEAVEKFSIVKTLQSIEECQVAVIMLDASEGVTEQDASVLGAVL
                     DAGRALVVAINKWDGLSSYQREQTEALLGRKLAFVDWAEAVRISALHGSGLRELFKAI
                     HRAHASATRQFGTAEVTQALEAAYAANPPPTVRGHVAKLRFAHPGGENPPTFVVHGNR
                     LRTLSDTYRRYLENFFRKRFKLVGTPVRFVFKEGENPYKDKKNPLTDRQVARKRRLLR
                     HVKRKG"
     gene            complement(875..>1571)
                     /locus_tag="VLM17_06555"
     CDS             complement(875..>1571)
                     /locus_tag="VLM17_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR65245.1"
                     /translation="YLRKRYGKRKLILVGHSWGTIVGMQAALRRPDLFAAYVGIGQVI
                     DTRENERISYDYAVRQAKAHANDAALKELATIAPYPGDTPITRERIIIARKWAQYYGG
                     MSAFRTDSKYYFDGLLLSPDYEAADACAIDKGSLATLGRVLPEFLAVDFRGIRRFPIP
                     VVMFLGRHDYTTPSAPTAEWLAGVDAPYKQAVWFEHAAHMIPWEEPGKVLVSLLQTVR
                     PLAAEAKDAQPGK"
BASE COUNT          251 a          543 c          538 g          239 t
ORIGIN      
        1 ggtcgcccca acgtcggcaa gtcgacgctg gtcaaccgcc tgctcggcga ggaacggatg
       61 atcgcctccg acgtgccggg cacgacgcgc gactcgatcg ccgtcgacct cgagcgcgac
      121 ggccgcaagt accgcctggt cgacaccgcc ggcctgcgcc gcaggtccaa ggtggaggag
      181 gcggtcgaga agttctccat cgtcaagacg ctgcagtcga tcgaggaatg ccaggtcgcg
      241 gtgatcatgc tcgacgcgtc ggaaggcgtg accgagcagg acgccagtgt gctcggtgcg
      301 gtgctggatg ccggccgcgc actggtcgtc gccatcaaca aatgggatgg cctgagcagc
      361 taccagcgcg agcagaccga ggcgctgctg ggccgcaagc tcgccttcgt cgactgggcc
      421 gaggcggtcc gcatctccgc gctgcatggc tcgggcctgc gcgagctgtt caaggcgatc
      481 catcgcgcgc atgcgtcggc cacgcgccag ttcggcaccg ccgaggtgac gcaggccctg
      541 gaagccgcct acgccgccaa tccaccgccg accgtgcgcg gccacgtcgc caagctgcgc
      601 ttcgcccatc cgggcggcga gaacccgccg accttcgtgg tgcacggcaa ccgcctgcgc
      661 acgctcagcg acacgtacag gcgctacctc gagaacttct tccgcaagcg cttcaagctg
      721 gtcggcacgc cggtgcgctt cgtcttcaag gaaggcgaaa atccgtacaa ggacaagaag
      781 aacccgctca ccgaccgcca ggtcgcgcgc aagcggcgcc tgctgcggca cgtgaagcgc
      841 aagggctgaa cccgcgctcc accgccgcga agcgtcattt gcccggctgc gcgtccttcg
      901 cttccgccgc cagcggccgc accgtctgca gcaggctgac caggaccttc cccggctcct
      961 cccacgggat catgtgcgcc gcatgctcga accacaccgc ctgcttgtac ggcgcgtcga
     1021 ccccggcgag ccattcggcg gtgggcgccg aaggcgtggt gtagtcgtgg cggccgagga
     1081 acatcaccac cgggatcggg aagcgcctga tgccgcggaa gtccacggcg aggaactccg
     1141 gcagcacgcg gccgagggtg gccaggctgc ccttgtcgat cgcgcaggca tccgccgctt
     1201 cgtagtcggg tgaaagcagc aggccgtcga agtagtactt cgagtcggtg cggaaggcgc
     1261 tcatgccgcc gtagtactgc gcccacttgc gggcgatgat gatgcgctcg cgggtgatcg
     1321 gcgtgtcgcc gggatagggc gcgatcgtcg ccagttcctt caacgcggcg tcgttcgcgt
     1381 gcgccttcgc ctgccgcacg gcgtagtcgt agctgatgcg ctcgttctcg cgggtgtcga
     1441 tcacctggcc gatgccgacg taggcggcga acaggtcggg gcgcctgagc gcggcctgca
     1501 tgccgacgat cgtgccccag ctgtggccga ccaggatcag cttgcgcttg ccgtagcgct
     1561 tgcgcaggta g
//
LOCUS       DATIQC010000308         1602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_161927, whole genome shotgun sequence.
ACCESSION   DATIQC010000308 DATIQC010000000
VERSION     DATIQC010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161927"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..1039
                     /gene="trxA"
                     /locus_tag="VLM17_06560"
     CDS             173..1039
                     /gene="trxA"
                     /locus_tag="VLM17_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014508307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HSR65246.1"
                     /translation="MAANPHVIDVTTETFEAQVLQQSLQVPVLVDFWATWCGPCKTLG
                     PLLEKLAGEYNGAFVLAKVDVDQEQQLAGVFQIRSIPTVMLVKDGQLVDGFPGALPEG
                     QLREFLAHHGIAPGAAVEEAPAAGVAAPVDPHAEVPRLRRAVEAEPDKPELKLDLALA
                     LLAVGHAQEAEQLLDALPANLATDDRAVKARARLAFASRLRDAPPPEVLESAIANDPA
                     DLRARYLLGVHRLVGGDSEAALDQFLEMLRRDRGFEDGLAKKALIDAFRVIEDEDLVG
                     RYRRRMSSLLLV"
     gene            1136..1591
                     /locus_tag="VLM17_06565"
     CDS             1136..1591
                     /locus_tag="VLM17_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4442 domain-containing protein"
                     /protein_id="HSR65247.1"
                     /translation="MPVSFAVLRRFWNLWPPYLFTGIRVLGIAPDGLHARVRLRLHRW
                     NRNAFGTHFGGSLLAMVNPFWPLLVLHRLGGDYIVWDTKNEIEFVRAMREDVFAEFRL
                     DPAAVEEMRAAAAGGGRVLRWFPFEIANAAGEIAARGRVEVYVRRKRDR"
BASE COUNT          204 a          587 c          583 g          228 t
ORIGIN      
        1 gtggcccgtg cgtgcgcggc gtcgcgcacc ctgccaggca ggcgcgagcg tccgcgcgct
       61 ggccggcacc cctcggggcg gacgccacgc gcacgccggg ggtgcgacca tgcgcccttg
      121 cgccggccac cggccgccgc catctccccc gccttccatt ccggttcccg ccatggccgc
      181 caacccgcac gtcatcgacg tcaccaccga gaccttcgaa gcgcaggtcc tgcagcagtc
      241 gctgcaggtg ccggtgctgg tcgacttctg ggccacctgg tgcgggccgt gcaagacgct
      301 ggggccgctc ctcgagaagc tcgccggcga gtacaacggc gccttcgtgc tggccaaggt
      361 cgacgtcgac caggaacagc agctggcggg cgtcttccag atccgctcga ttcccaccgt
      421 gatgctggtg aaggacgggc agctggtgga cggcttcccc ggcgcgctgc cggaagggca
      481 gctgcgcgag ttcctcgccc accacggcat cgcgccgggc gcagccgtgg aggaggcgcc
      541 ggccgcgggg gtcgccgcgc cggtcgaccc gcacgccgag gtcccgcgcc tgcgccgggc
      601 cgtcgaagcc gagccggaca agcccgagct caagctcgac ctggcgctgg cgctgctcgc
      661 ggtcgggcac gcgcaggaag ccgaacagct gctcgatgcg ctgcccgcca acctcgccac
      721 cgacgaccgc gcggtgaagg cgcgcgcgcg cctggccttc gcgtcgcggc tgcgcgacgc
      781 cccgccgccg gaagtgctgg aatcggcgat cgccaacgat ccggccgacc tgcgcgcacg
      841 ctacctgctg ggcgtgcacc ggctggtcgg cggggactcc gaagcggcgc tggaccagtt
      901 cctggagatg ctgcggcgcg accgcggctt cgaggatggc ctcgcgaaga aggcgctgat
      961 cgacgcgttc cgggtgatcg aggacgagga cctggtcggc cgctatcggc ggaggatgtc
     1021 gtcgctgctg ctggtatgag gcccggggcc ggcccctgag ccgccaaggg aggccgccgg
     1081 tttcctccat acggatgcgt atgccatgct ggggcaccct gcccggccgc tccgcatgcc
     1141 cgtcagcttc gccgtcctgc gccgcttctg gaacctgtgg ccgccgtacc tgttcaccgg
     1201 catccgggtg ctggggatcg cgcccgacgg actccacgcc agggtccgcc tgcgcctgca
     1261 ccgctggaac cgcaatgcct tcggcaccca cttcggcggc agtctgctgg cgatggtcaa
     1321 tccgttctgg ccgctgctgg tgctgcatcg gctcggcggc gactacatcg tctgggacac
     1381 gaagaacgag atcgagttcg tgcgggcgat gcgcgaggac gtcttcgccg agttccggct
     1441 ggatccggcg gcggtcgagg agatgcgcgc cgccgcagcg ggcggcggcc gggtgctgcg
     1501 ctggttcccg ttcgagatcg ccaacgcggc cggcgagatc gccgcgcgtg gccgcgtcga
     1561 ggtctacgtg cgccgcaagc gcgaccgctg agggccgccg cc
//
LOCUS       DATIQC010000309         1606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_551272, whole genome shotgun sequence.
ACCESSION   DATIQC010000309 DATIQC010000000
VERSION     DATIQC010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551272"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VLM17_06570"
     CDS             complement(<1..209)
                     /locus_tag="VLM17_06570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HSR65248.1"
                     /translation="MVPTGSLLLFAGTALLMVLTPGPNMIYLVSRSVSQGPRAGVVSL
                     FGVAAALVVQMLAASVGLTALLVAVP"
     gene            372..869
                     /locus_tag="VLM17_06575"
     CDS             372..869
                     /locus_tag="VLM17_06575"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSR65249.1"
                     /translation="MAATPLPLDEFDHRLLELLQRDADATLAALGDAVGLSASAVQRR
                     IKRYRAQGLLRAVAVLDPSALPATTLATVWVTMERDTLRAHSAFRARMRGAPEVQQCY
                     ALAGEWDYLVILAASSVAHYREVAERLFVDEGNVRRYETRLVFDTVKQGLTLPTRPPA
                     SKRRR"
     gene            complement(885..>1606)
                     /locus_tag="VLM17_06580"
     CDS             complement(885..>1606)
                     /locus_tag="VLM17_06580"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HSR65250.1"
                     /translation="HLQRTFSARFGLSPAEYLAQRKLGTLRSALREGHDVSAALYDAG
                     YGSPSRVYEGGAARLGMTPARYRSGGAGEQIRWSIVETALGPALVATTARGICMVELG
                     GDARALEAKLRGEFPHAQLEQVDAGRDEFLAPRVRAVAEVLAGRQARVDVDLLGTAFQ
                     KKVWDALMRIPRGQTRSYAELAGALGQPRGARAVASACAHNRIAILVPCHRVVRGDGS
                     LGGYRWGLPLKQQLLERERAA"
BASE COUNT          223 a          579 c          609 g          195 t
ORIGIN      
        1 ggcaccgcga cgagcaatgc ggtcagtccc acgctcgccg ccagcatctg caccaccagc
       61 gcggcggcga cgccgaacag cgacaccacg ccggcgcgcg gcccctggct gaccgagcgc
      121 gagacgaggt agatcatgtt cggcccgggc gtgagcacca tcagcagcgc ggtgccggcg
      181 aacaggagca gcgaaccggt cgggaccatg ggggcgtcct gggggaaggc gcgtgcggcg
      241 gtcgacgcgg cggcgcggcg caggccgcgg gcgacgtcgg gaggcgcaca gcgtagcggc
      301 gcgcacgagc atcgcgcttg aaaattcatg cgccgcaacg caagattttt gcgcgcctcc
      361 ggagctccat gatggccgcc acgccactgc cgctggacga gttcgaccac cgcctgctcg
      421 agctgctgca gcgcgatgcc gacgccaccc tcgccgcgct cggcgatgcg gtcgggttgt
      481 cggcgagcgc ggtgcagcgg cggatcaagc gctaccgcgc gcagggcctg ctgcgcgcgg
      541 tcgccgtgct cgaccccagc gcgctgcccg cgaccacgct ggcgacggtg tgggtgacca
      601 tggagcgcga caccctgcgc gcgcacagcg ccttccgcgc gcgcatgcgc ggcgcgcccg
      661 aggtgcagca gtgctacgcg ctggccggcg aatgggacta cctggtcatc ctcgccgcca
      721 gcagcgtcgc gcattaccgc gaggtcgccg agcggctgtt cgtcgacgaa ggcaacgtgc
      781 gccgctacga gacgcggctg gtgttcgaca cggtgaagca gggactgacg ctgccgacgc
      841 ggccgccggc gtcgaagcgg cggcggtgac gttgcgggcg gcgatcacgc cgcgcgttcg
      901 cgctccagca gctgctgctt gagcggcagg ccccagcggt agccgccgag cgagccgtcg
      961 ccgcgcacca cccggtggca gggcaccagg atggcgatgc ggttgtgggc gcaggcgctg
     1021 gccacggcac gcgcgccgcg cggctggccg agcgcgccgg cgagttcggc gtagctgcgc
     1081 gtctgcccgc gcgggatgcg catcagcgca tcccacacct tcttctggaa ggcggtgccg
     1141 agcaggtcga cgtccacccg cgcctggcgg ccggcgagca cctcggcgac cgcgcgcacg
     1201 cgcggcgcga ggaactcgtc gcggccggcg tccacctgct cgagctgcgc gtgcgggaat
     1261 tcgccgcgca gcttggcctc aagcgcgcgg gcgtcgccgc cgagttcgac catgcagatg
     1321 ccgcgcgcgg tcgtcgccac gagcgcgggc ccgagcgcgg tctcgacgat gctccagcgg
     1381 atctgctcgc ccgcgccgcc cgagcgatag cgcgcgggcg tcatgcccag gcgcgcggcg
     1441 ccgccttcgt acacgcgcga aggcgaacca tagccggcgt cgtacagcgc cgcgctgacg
     1501 tcgtggcctt cgcgcaacgc gctgcgcagg gtgccgagct tgcgctgggc gaggtattcg
     1561 gccggactca ggccgaagcg cgcactgaag gtgcgttgca ggtgcg
//
LOCUS       DATIQC010000310        13302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_480456, whole genome shotgun sequence.
ACCESSION   DATIQC010000310 DATIQC010000000
VERSION     DATIQC010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 13302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13302
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480456"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..1325)
                     /locus_tag="VLM17_06585"
     CDS             complement(153..1325)
                     /locus_tag="VLM17_06585"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR65251.1"
                     /translation="MPEGTARPQPHAALAGIHVPAGCRERHRAVVALRVARAAHVLAV
                     LTLAWIPIDLARLGMAHALPSLPLRLATALLLRALARAAPRLSPMGAVQASMWLQAVA
                     FAALQLAVGPQRADALQIGYGLFPFVLAAQLALFPLPWWCILVAALAPATQLAVVLVA
                     QPPGPLQAWSDAWLFVLIVAVAAWTGQAQLHLLVELLGARHDAFHDPLTGLANRRAAG
                     ERLDAARAHALRHGEPLSVLMLDIDHFKRVNDLHGHADGDHVLVALADALRQELRAGD
                     LGARHGGEEFLAVLPASDAAQAHEAAERIRLHVQALRIPLAEATLSITVSIGIATLHA
                     DESAPALLARADGALYRAKAGGRNRCEIAAAPIDGDAFVPPADTTPPPGAGEPARA"
     gene            complement(1318..2433)
                     /locus_tag="VLM17_06590"
     CDS             complement(1318..2433)
                     /locus_tag="VLM17_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008433317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSR65252.1"
                     /translation="MDAAGELRVPHEAVRADQRAWARHALEKLRQEAARSADTHLLRL
                     DFPGFPGIAFYFKDEAAHPTGSLKHRLARSLFLYALCNGRLRAGQAVVDASSGSTAIS
                     EAWFARLLGLPFVAVMPACTAPRKIRDVEALGGRCDLVEDPSAVHARAAWHAANGACH
                     LDQFGLAERATDWRGNNNIAESILAQMAREPQPEPAWIVCGAGTGGTSATIGRYLRYR
                     GLATRLCVAEPTGSGFVRGWRSRDPQARATQATVVEGIGRPRVEPGFVFDVVDAVVEV
                     DDAQSIAAMGVLEELLGRRYGGSSGTNLVACLQLACAMRARGGHGSIVSLLCDRGERY
                     EQTLFDRDWLAARGIDPAPARTALRACLASGHWHGDA"
     gene            complement(2439..4400)
                     /locus_tag="VLM17_06595"
     CDS             complement(2439..4400)
                     /locus_tag="VLM17_06595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008433318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HSR65253.1"
                     /translation="MNAVRALEPPSAPATRPARDPALDACFLGPYGENDTLLEKLVVE
                     FLRDHVYWRRNFHPEDPPAISTRAAQTPGYQAFEARMRRELHALSAALKKSVPFHSPR
                     YIGHMASDLLLPGLAAQILTLPYNPNNVSEDAAPVTVELEVRAGLQLARMLGYPDDPA
                     RADCAFGHLTSGGTLANYQALRLALALKAFPVALRAAGVPDLALPEDDWTAFNLAPRA
                     GVALLQQWQDWLAAQPAAGRQRWHARVQEQRPEHLGLAGFFLRHPRLRMPCVLAPGTA
                     HYSWSKGMKLLGLGRAQLVLLPDRGMRLDADALDAGLERCLRERQPVLLAVAVLGTTE
                     YGTIDPVDRVVAARDAFAPRGLGFGVHVDAAWGGYLATLFREQDGGLRPYEAVRAEFA
                     RFPQPEVHAAFAALGDTDSVTVDPHKLGYLPYGAGAFVCRDHRAMALLAEEADYVFAG
                     AAPADYMARYRRLGQFIPEGSKAGANAAAVYVTHKVLPLDHVHFGELPRQTVRAAEAF
                     AARAARFTVEVAEAASACVPFAPDSNLVCLALNPAGNRDVARANAFVGQLHDALRCDP
                     QRPLQTREFFGSVTTLKADALGRDDLARIAGELGLDPGSFHVEGGADRLLILRHTLMN
                     PYLIDHENGISYIDRYFEYLAALVRALPR"
     gene            complement(4483..4887)
                     /locus_tag="VLM17_06600"
     CDS             complement(4483..4887)
                     /locus_tag="VLM17_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008433319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HSR65254.1"
                     /translation="MIEFYPQIKLLHIAMVACSGSLFLLRGLLVQLGRQGVAMAAPVR
                     YLSYAIDTTLLTAALMLLTILPHGMFANGWLTVKLVLVVAYVVLGTIALKRGRTPRAR
                     SVAYVAALLVFAFVITIARAHHPLGIFFTPFG"
     gene            complement(4904..6136)
                     /locus_tag="VLM17_06605"
     CDS             complement(4904..6136)
                     /locus_tag="VLM17_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NnrS family protein"
                     /protein_id="HSR65255.1"
                     /translation="METPAVPRAPALSPARLAETPHRLLFFVGASNVLLAMLWWAAWL
                     ATTRWQWFTMPQPDPYAGWLHAFVMQYQMLPSFIFGFLLTTFPRWMGLRDLDRWRYAP
                     VGAGLFGGQLATLLGALGWPAGILVGLLMTLAGWTAGLATLGPLLWREQGRTWHARSC
                     FAALVLGFLGLLAWTAFLLTGNPLCAFASIKAGTFGLLLPVYFSVAHRMFPFFAGNVV
                     PGYRGWRPLWLLAVFWALCLLHLALELAHAYGWLWLADVPLLALTAVAWARWWPLGRK
                     PGLLTVLFVGLAWLPIAFALYSAQSVAYHLTGVYWLGRAPAHALFIGFFGSVLIAMVT
                     RVTQGHSGRPLAMPTAAWFAFAAIQLVAITRIGAELADDPMRWQALAAFSWLLAFAPW
                     VLRIGRITLSPRVDGKPG"
     gene            complement(6262..7518)
                     /gene="chrA"
                     /locus_tag="VLM17_06610"
     CDS             complement(6262..7518)
                     /gene="chrA"
                     /locus_tag="VLM17_06610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate efflux transporter"
                     /protein_id="HSR65256.1"
                     /translation="MRAAANGSAPAKSATGEGLPSVPREPWSRLFLRFLRFGALAWGG
                     PVAQIAMIRHELVDQERWISSAHFNRVLAVYQILPGPEAHELCVYFGMRSRGRWGGLL
                     AGLGFMLPGFLLMFALSWAYVHFGLKTAALQSVFAAVQVAVAALIVRAVFRIGGHVVT
                     DGWLWAVAIAATAAQLAGVHFALILAVGGAIYLFARRGFRAAAVGLTALSVAAVVVLV
                     ATGGLAGLSALSGSGAGHGGARVAALPVAALFWSGLKAGLLTFGGAYTVIPFLQHDAV
                     VRGAWMSNAQFLDGLALSGLLPAPLIIFSTFVGYLGGGPWGAVAMTAGIFLPAFAFTL
                     VGHDALERWVHHPRTRVFLEGVTAGVVGLIAGTTITLLRVSLTSVQALILFGIVLAVL
                     FASKARMVIPAAIAGAAVWGWVASLA"
     gene            complement(7553..7888)
                     /locus_tag="VLM17_06615"
     CDS             complement(7553..7888)
                     /locus_tag="VLM17_06615"
                     /inference="COORDINATES: protein motif:HMM:NF019127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HSR65257.1"
                     /translation="MVKVTVGREGRMHGEAIGASMGLTTWAAFTGSGRAAAMDGDVIM
                     TAAEVQPVLRALRRAGIHVVALHNHVLGEEPAYYFAHFWGKGGAIAPARGFRGMLGAQ
                     SAPGGHATH"
     gene            complement(8052..10379)
                     /locus_tag="VLM17_06620"
     CDS             complement(8052..10379)
                     /locus_tag="VLM17_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric-oxide reductase large subunit"
                     /protein_id="HSR65258.1"
                     /translation="MSNTRKLWLALGALLLVSFGVLLWAGGEIFQAKPPIPENVVSTD
                     GSVVFTRADIEEGQEVWQSMGGMQLGSIWGHGAYVAPDWSADWLHREAMQLLDMWARA
                     DDSMASYAQLDVEQQAALRGRLQQVMRRNTYDPVTATITLDRDRVIAISNVAAHYESL
                     FGNDPATAALRDAYAMKDDTVPDPQHRRALTAFFWWTAWACGTERPGSSVLAPVQPGD
                     PVHRVTYTNNWPSEPLIGNTPPAPLWLWSAFSVLFLILGIALLGWHHARTHHRGEGEP
                     HLVPASDPFATLRITPSMRATAKYFWVVLALFLVQILLGAITAHYQVEGHDVYGFALS
                     NFLPYSITRTWHTQLAVLWIAVAWLGTGLYIGPALSGHEPKYQRLGVNFLWGCLLVIV
                     VGAFAGQWMAVMQKIGIGPANFWFGHQGWEYADMGRFWQIFLFVGLLLWLTLVGRSLW
                     PILRGPESEGKAIVGLLFLSTVCIGLFFGAALMWGEHTHISVVEYWRWWLVHLWVEGF
                     FEVFATAVMALIFTRLGLIESRSATTAVLFATIVFMAGGVLGTLHHLYFVGTPTAVVA
                     LGASFSALEVVPLAYIGFEAYHTWKLGQATPWMARYKWPILFFIAVSFWNLVGAGLFG
                     FLINPPLSLYFMQGLNLTPLHGHTALFGVYGMLGIALVLFCMRGLRGQMVWDTKALKV
                     AFWCLNIGLALMAVLTLLPLGTMQLFAAIEHGYYYARSADFMNKPIVDMLVWMRVPGD
                     TIFSIGALSLCWFGFRLWVAPRRESIGSGARETER"
     gene            complement(10635..11387)
                     /locus_tag="VLM17_06625"
     CDS             complement(10635..11387)
                     /locus_tag="VLM17_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR65259.1"
                     /translation="MSEPAFPRIDQRTLSDDGDAFTFCSTCAFSQACLSQGMDKASLR
                     DLHVLVEHIGPFHAGEHIFREGDPFEAIAAVRAGTVKTYVIDRDGREHVLGFHLPGEV
                     IGLNAIDAEHYPCNAVALDTVMLCRFSFPKIAVLAARLPGLQAQLFRLLSRDIGRAAL
                     LAGDWSADQRMAAFLIGLSRRLAARGFSANRFQLTMARTDIANYLRLAPETVSRVLKR
                     FQQDGLLAVDRRELELVDRDGLEALAAPILRD"
     gene            complement(11407..12804)
                     /gene="hemN"
                     /locus_tag="VLM17_06630"
     CDS             complement(11407..12804)
                     /gene="hemN"
                     /locus_tag="VLM17_06630"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HSR65260.1"
                     /translation="MATPPFFSAELLRRYDRPGPRYTSYPTAPQFSSAFGEAQLREAA
                     LASNGDPIPRRLSLYVHVPFCFSPCFYCGCNRIITRDLGRAETYLTRLYREIDLTAAL
                     FDRDREVIQVHFGGGTPNFLSPAQLGDVLDSLRRHFHFSDSPERDISIEIDPRFVTGE
                     DIAAMGRLGFNRASFGVQDFDPLVQAAVNRIQTVAETRAAVEACRTAGFRSVNVDLIY
                     GLPKQNAYGFAGTLDLVAGMRPDRIAVYSYAHLPELFKPQRQIDAADLPDAETKLGLL
                     QLAIEKLTEAGYVYIGMDHFALPDDDLAIAQARGGLHRNFMGYTTHADSDLVGLGVSA
                     ISHVGDSFSQNPRDLPSWQLAIDEGRLPVFRGMRLSEDDQLRADLIQQLMCQGEIPIG
                     ALERRYAIDFDEYFAQALERLEPLRADGLVRRESGRIAVTAQGRLLLRNIAMCFDRYL
                     DQPATVATPRFSRAI"
     gene            13028..13240
                     /locus_tag="VLM17_06635"
     CDS             13028..13240
                     /locus_tag="VLM17_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65261.1"
                     /translation="MERSFITVKPDPDGWMLVAPDARAVHYRDQSAALEAATRMTQAL
                     HEVRGRPFGVELQMACGDRVLVARRG"
BASE COUNT         2093 a         4597 c         4955 g         1657 t
ORIGIN      
        1 tcgggatcga ccggcgcgcg cacgcgggcg agctggccgt cgcgctccag ccgggcgagg
       61 aaggaacgca ggtcgtggtg ggacatcggc ggctccgcgc ggagggcgcg cgcagcatcc
      121 gcgctgccgc cggcgcgcgt cgctgacgcg gatcaagccc gggcgggttc gccggcgccg
      181 ggcggcggcg tggtgtccgc cgggggcacg aaggcgtcgc catcgatcgg cgcggccgcg
      241 atctcgcagc ggttgcggcc tccggccttg gcgcggtaca gcgcgccatc ggcgcgcgcc
      301 agcagcgcgg gagcggattc gtcggcgtgc agggtggcga tgccgatgct gacggtgatc
      361 gacagcgtgg cttccgccag ggggatgcgc agtgcctgca catgcaggcg gatgcgctcg
      421 gcggcttcgt gcgcctgggc cgcatcgctg gccggcagca cggcgaggaa ctcctcgccg
      481 ccgtggcgcg cgccgaggtc gcctgcgcgc agttcctggc gcaacgcgtc ggccagcgcg
      541 accagcacgt ggtcgccgtc ggcgtgcccg tgcaggtcgt tgacgcgctt gaagtggtcg
      601 atgtcgagca tcagcaccga caggggttcg ccatgccgca aggcatgcgc gcgcgccgcg
      661 tccaggcgct cgccagcggc gcggcggttg gcgaggccgg tgagcgggtc gtggaaggcg
      721 tcgtggcgcg cgccgagcag ctccaccagc aggtgcagct gcgcctgccc ggtccacgcg
      781 gccacggcga cgatcagcac gaacagccac gcgtcgctcc acgcctgcag cgggccgggc
      841 ggctgtgcga ccaagaccac cgccagctgg gtggccggcg ccagcgcggc gacgaggatg
      901 caccaccacg ggagcgggaa cagcgccagc tgtgccgcca gcacgaaggg gaagaggccg
      961 tagccgatct gcagcgcgtc ggcgcgttgc gggccaacgg ccagctgcag cgcggcgaag
     1021 gccacggcct gcagccacat gctggcctgc accgcgccca tcggcgacag gcgcggggcc
     1081 gcccgcgcga gcgcccggag cagcagcgcg gtggcgaggc gcagcggcag cgacggcagc
     1141 gcgtgggcca tgcccaggcg ggcgaggtcg atcgggatcc aggccagggt gagcaccgcc
     1201 agcacgtgcg ccgcccgggc gacgcgcagc gcgaccacgg cgcgatggcg ctcgcggcac
     1261 ccggcgggca cgtggatccc cgccagtgcc gcatgtggtt gcggcctggc ggtgccttca
     1321 ggcatcgccg tgccagtggc cgctggccag gcacgcacgc agtgcggtcc gcgcgggcgc
     1381 gggatcgatg ccgcgcgcgg ccagccagtc gcggtcgaac agggtctgct cgtagcgctc
     1441 gccacggtcg cagagcaggc tgacgatgct gccgtgcccg ccgcgcgcgc gcatcgcgca
     1501 ggccagctgc aggcaggcga cgaggttggt gccggacgag ccgccgtagc gccgcccgag
     1561 cagctcctcg agcacgccca tcgcggcgat cgactgcgcg tcgtccacct ccaccaccgc
     1621 atcgaccacg tcgaacacga accccggttc cacccgcggc cgcccgatgc cctcgaccac
     1681 cgtcgcctgc gtcgcgcgtg cctgcgggtc gcggctgcgc cagccccgca cgaagccgct
     1741 gccggtgggc tcggccacgc acagccgggt ggcgagcccg cggtagcgca ggtagcggcc
     1801 gatcgtcgcc gaggtgccgc cggtgccggc gccacagacg atccacgccg gctcgggctg
     1861 cggctcgcgc gccatctgcg cgaggatcga ttcggcgatg ttgttgttgc cgcgccagtc
     1921 ggtggcgcgc tcggcgaggc cgaactggtc gaggtggcag gcgccgttcg ccgcgtgcca
     1981 ggcggcgcgc gcgtggaccg cggacggatc ctcgaccagg tcgcagcggc cgccgagcgc
     2041 ctcgacgtcg cggatcttgc gcggcgcggt gcaggccggc atcacggcga cgaagggcag
     2101 gccgagcagg cgcgcgaacc acgcctcgga gatcgcggtg ctgccggagg acgcatccac
     2161 cacggcctgg cccgcgcgca ggcggccgtt gcacagcgcg tacaggaaca gcgaccgcgc
     2221 cagccggtgc ttgaggctgc cggtcgggtg cgcggcctcg tccttgaagt agaacgcgat
     2281 gccggggaag ccggggaaat ccagccgcag caggtgggta tcggccgaac gcgccgcttc
     2341 ctggcgcagc ttctccagcg cgtggcgcgc ccatgcgcgc tggtcggcgc gcacggcctc
     2401 gtgcggaacg cgcagctccc cggcggcgtc catgcggttc atcgcggcag cgcgcgcacc
     2461 agcgcggcga ggtactcgaa gtaccggtcg atgtagctga tgccgttctc gtggtcgatc
     2521 aggtacgggt tcatcagggt gtggcgcagg atcagcaggc ggtcggcgcc gccttcgacg
     2581 tggaagctgc ccgggtccag cccgagttcg cccgcgatgc gcgcgaggtc gtcgcggccg
     2641 agcgcgtctg ccttcagcgt ggtgaccgag ccgaagaatt cccgcgtctg cagcggccgc
     2701 tgcggatcgc agcgcagcgc gtcgtgcagc tggccgacga aggcgttcgc gcgcgcgaca
     2761 tcgcggttgc cggcggggtt gagcgcgagg cagacgaggt tgctgtcggg agcgaacggc
     2821 acgcaggcgc tcgccgcctc ggcgacctcg acggtgaagc gcgccgcgcg cgcggcgaag
     2881 gcctcggcgg cgcgcacggt ctgccgcggc agttcgccga aatggacatg gtcgagcggc
     2941 agcaccttgt gggtgacgta gaccgcggcg gcattcgccc cggccttgga gccctcggga
     3001 atgaactggc cgagccggcg atagcgtgcc atgtagtcgg cgggcgccgc gccggcgaaa
     3061 acgtagtcgg cctcctcggc gagcagcgcc atcgcgcggt ggtcgcggca gacgaacgcg
     3121 ccggcaccgt agggcaggta gccgagcttg tgcgggtcga cggtcaccga gtcggtgtcg
     3181 ccgagcgcgg cgaaggcggc atgcacctcc ggctgcggga accgggcgaa ttccgcgcgc
     3241 accgcctcgt acgggcgcaa gccgccgtcc tgctcgcgga acagggtggc gaggtagccg
     3301 ccccaggcag cgtcgacgtg cacgccgaag ccgagcccgc gcggcgcgaa ggcgtcgcgc
     3361 gcggcgacga cgcggtcgac cggatcgatg gtgccgtact cggtggtgcc gagcaccgcg
     3421 accgcgagca gcaccggctg gcgttcgcgc aggcagcgtt cgagcccggc gtccagcgcg
     3481 tcggcgtcca ggcgcatgcc gcgatcgggc agcagcacca gctgcgcgcg gccgaggccg
     3541 agcagcttca tgcccttgct ccaggagtag tgcgcggtgc ccggcgccag cacgcagggc
     3601 atgcgcagcc gtggatggcg gaggaagaac ccggccaggc cgagatgctc cgggcgctgt
     3661 tcctgcacgc gcgcgtgcca gcgctggcgg ccggccgcgg gctgcgccgc cagccagtcc
     3721 tgccactgct gcagcagcgc gacacccgcg cgcggggcga ggttgaacgc cgtccagtcg
     3781 tcttccggca gggcgagatc gggcacgccg gcggcgcgca gcgcgaccgg gaacgccttc
     3841 agcgcgagcg ccaggcgcag cgcctggtag ttcgccagcg tgccgccgga ggtgaggtgg
     3901 ccgaacgcgc agtccgcgcg cgccgggtcg tccggatagc cgagcatgcg cgccagctgc
     3961 aggcccgcgc gcacctccag ttccacggtg acgggcgcgg cgtcctcgct gacgttgttg
     4021 gggttgtagg gcagggtgag gatctgcgcc gccaggccag gcagcagcag gtcggacgcc
     4081 atgtggccga tgtagcgcgg gctgtggaac ggcaccgact tcttcagcgc ggccgacagc
     4141 gcgtgcagct cgcggcgcat gcgcgcctcg aaggcctggt agccgggcgt ctgcgcggcg
     4201 cgggtggaga tcgccggcgg gtcctcgggg tggaagttgc gccgccagta gacgtggtcg
     4261 cgcaggaatt cgacgaccag cttctcgagc agggtgtcgt tctcgccgta ggggccgagg
     4321 aagcaggcgt cgagcgcggg gtcgcgcgcg ggccgggtcg caggggcgga aggtggttcg
     4381 agggcgcgga cggcattcat gcccgcatgg ttgggccgcg cgcggggagc ggccttgacc
     4441 gggatcaatc ccggcggctt tcgccccggc ggcccgcggc cgtcacccga acggggtgaa
     4501 gaagatcccc agcgggtggt gcgccctggc gatcgtgatg acgaaggcga acaccagcag
     4561 ggccgcgacg taggcgacgc tccgcgcgcg cggcgtgcgc ccgcgcttga gcgcgatcgt
     4621 gccgaggacc acgtaggcga ccaccagcac cagcttcacc gtcagccagc cgttggcgaa
     4681 catgccgtgc ggcaggatcg tgagcagcat cagcgccgcg gtgagcagcg tggtgtcgat
     4741 ggcgtagctc aggtagcgca ccggcgccgc catcgcgacg ccttggcggc cgagctgcac
     4801 cagcagcccg cgcagcagga acaggctgcc gctgcaggcg accatcgcga tgtgcagcag
     4861 cttgatctgc ggatagaact cgatcatgcg gcgattgtcg ccttcagccc ggcttgccgt
     4921 ccacgcgcgg cgacagggtg atgcggccga tgcgcagcac ccacggcgcg aacgcgagca
     4981 gccagctgaa cgccgccagc gcctgccagc gcatcggatc gtcggcgagc tcggcgccga
     5041 tgcgggtgat cgcgaccagc tggatcgcgg cgaaggcgaa ccatgccgcc gtcggcatcg
     5101 ccagcgggcg cccggaatgg ccctgcgtca cccgcgtcac catcgcgatc agcacgctgc
     5161 cgaagaaacc gatgaacagc gcgtgcgccg gcgcgcggcc gagccagtac acgccggtca
     5221 ggtggtaggc gacgctctgc gccgaataca gggcgaacgc gatcggcagc cacgccagcc
     5281 caacgaacag cacggtcagc agccccggct tcctgccgag cggccaccag cgcgcccacg
     5341 ccaccgcggt gagcgccagc agcggcacgt cggcgagcca cagccagccg taggcgtgcg
     5401 cgagttcgag cgccaggtgc agcaggcaca gcgcccagaa caccgccagc agccacagcg
     5461 gccgccagcc gcggtaaccg ggcaccacgt tgccggcgaa gaacgggaac atgcggtgcg
     5521 cgaccgagaa atacaccggc agcagcaggc cgaaggtgcc ggccttgatg ctggcgaacg
     5581 cgcacagcgg gttgccggtg agcaggaacg ccgtccatgc cagcaggccg aggaagccga
     5641 gcaccagcgc ggcgaagcac gagcgcgcat gccaggtccg gccctgctcc cgccacagca
     5701 gcgggccgag ggtcgccagc ccggcggtcc agccggccag cgtcatcagc aggccgacca
     5761 ggatccccgc cggccagccc agcgcgccga gcagggtggc gagctgcccg ccgaacaggc
     5821 ccgcgccgac cggcgcgtag cgccagcggt cgaggtcgcg cagtcccatc cagcgcggga
     5881 aggtcgtcag caggaagccg aagatgaagc tcggcagcat ctggtactgc atcacgaagg
     5941 cgtgcagcca gccggcgtag ggatccggct gcggcatcgt gaaccactgc cagcgcgtgg
     6001 tcgccagcca ggccgcccac cacagcatcg ccagcagcac gttgctggcg ccgacgaaga
     6061 aaagcaggcg gtgcggggtt tcggcgaggc gggcgggaga aagggctggg gcgcggggca
     6121 cggcgggagt ctccatggcg ccatggtcgc cgccggcggc cgcgggcgct ttgatccagg
     6181 tcaggtcgtg caggcgggtg cggcggacgc cggtcgcatc ggcggatgat gcggatcgcc
     6241 ccgcggttgc cgccggcagg atcaggccag cgacgccacc cagccccaca ccgcggcgcc
     6301 tgcgatcgcc gcggggatca ccatccgtgc cttggacgcg aacaggaccg cgagcacgat
     6361 gccgaacagg atcagcgcct gcacgctggt caggctgacg cgcaggaggg tgatggtggt
     6421 gcccgcgatc aggccgacga cgccggcggt cacgccttcc aggaacaccc gggtgcgcgg
     6481 atggtgcacc cagcgttcca gtgcatcgtg gccgaccagc gtgaaggcga atgccggcag
     6541 gaagatgccg gccgtcatcg cgaccgcgcc ccaggggccg ccgcccaggt agccgacgaa
     6601 ggtggagaag atgatcagcg gcgcgggcag cagccccgaa agcgccaggc catcgaggaa
     6661 ctgggcgttg ctcatccagg cgccgcgcac gaccgcgtcg tgctgcagga acgggatgac
     6721 cgtgtaggcg ccgccgaagg tcaacaggcc cgccttcagc ccggaccaga acaacgccgc
     6781 caccggcagg gcggcaacgc gcgcgccccc gtggccggcg ccactaccgg agagggccga
     6841 caggccggca agtccgcccg tggcgacgag cacgaccacg gctgcaacgg acagggcggt
     6901 gaggcccacg gccgccgccc ggaatccacg ccgggcgaac aggtagatcg cgccgcccac
     6961 cgcgaggatc agggcgaagt gcacgcccgc cagctgggcc gccgttgccg cgatcgccac
     7021 ggcccacaac cagccatcgg tcaccacgtg cccgccgatg cggaagaccg cccgcacgat
     7081 cagggcggcc accgcgacct ggaccgccgc gaacaccgac tgcagcgcag cggttttcag
     7141 gccgaagtgc acatacgccc aggacagcgc gaacatcagc aggaagccgg gcagcatgaa
     7201 gccgagcccg gccagcaggc cgccccatcg gccacgcgat cgcatgccga aatacacgca
     7261 cagctcgtgc gcctcggggc cgggcaggat ctggtacacc gccagcacgc ggttgaagtg
     7321 cgcgctgctg atccagcgct cctggtcgac cagctcgtgg cggatcatcg cgatctgcgc
     7381 gaccggcccg ccccaggcga gggcgccgaa gcgcaggaac cgcaggaaga gccgcgacca
     7441 gggctcgcgc ggaaccgaag ggagaccttc cccggtcgcg gatttggctg gagcggaccc
     7501 gttggcggca gcgcgcatcg cgtcttgcag aaggggaggg gctggtcgcc ggtcaatgcg
     7561 tcgcgtgacc gcccggcgcg gattgcgcgc cgagcatgcc acggaagccg cgcgccggcg
     7621 cgatggcgcc gcccttgccc cagaagtgcg cgaagtagta cgcgggctcc tcgcccagca
     7681 cgtggttgtg caaagcgacc acatggatgc cggcccggcg cagcgcgcgc agcaccggct
     7741 ggacttccgc ggcggtcatg atcacgtccc cgtccatggc ggccgcgcgg ccggatcccg
     7801 tgaacgctgc ccaggtcgtc agtcccatcg aagcgccgat ggcttcccca tgcatgcggc
     7861 cctcgcggcc gaccgtgacc ttcaccatgc gcgcgcccgc ggcggcattt cttcagcggg
     7921 caaggaaacc accggcccgg gtacccgggc gtgaaaacgc gccatccggg cccttgcccc
     7981 gcgtacgggc atcgggcaaa aaaaagacct ccggcgagcc ggaggtccct gggccgggcg
     8041 gtgcggcgca atcagcgttc ggtttcgcgc gccccgctgc cgatcgactc gcgccgcggc
     8101 gccacccaca gccggaaccc gaaccagcac agcgacagcg cgccgatgct gaagatcgtg
     8161 tcgcccggca cgcgcatcca caccagcatg tccacgatcg gcttgttcat gaagtccgcc
     8221 gagcgcgcgt agtagtagcc gtgctcgatc gccgcgaaca gctgcatcgt gcccagcggc
     8281 agcagggtca gcaccgccat cagcgccagg ccgatgttga ggcaccagaa cgcgaccttc
     8341 agcgccttcg tgtcccacac catctgcccg cgcagcccgc gcatgcagaa cagcaccagc
     8401 gcgatgccga gcatgccgta cacgccgaac agcgcggtgt ggccgtgcag cggggtcagg
     8461 ttcaggccct gcatgaagta cagcgacagc ggcgggttga tcaggaagcc gaacaggccg
     8521 gcgccgacca ggttccagaa cgacaccgcg atgaagaaca ggatcggcca cttgtagcgg
     8581 gccatccacg gcgtggcctg gccgagcttc caggtgtggt aggcctcgaa gccgatgtag
     8641 gccagcggca ccacttccag cgcgctgaag ctcgcgccca gcgccaccac cgcggtcggc
     8701 gtgccgacga agtacaggtg gtgcagggtg ccgagcacgc cgccggccat gaacacgatg
     8761 gtcgcgaaca gcaccgccgt ggtcgccgac ctggattcga tgagtcccag gcgggtgaag
     8821 atcagcgcca tcacggcggt ggcgaacacc tcgaagaagc cctccaccca caggtgcacc
     8881 agccaccagc gccagtactc caccaccgaa atgtgggtgt gctcgcccca catcagcgcc
     8941 gccccgaaga acaggccgat gcacacggtc gacaggaaca gcaggccgac gatcgccttg
     9001 ccctcgcttt ccgggccacg caggatcggc cacagcgaac ggccgaccag ggtcagccac
     9061 agcagcaggc cgacgaacag gaagatctgc cagaagcggc ccatgtcggc gtattcccag
     9121 ccctggtggc cgaaccagaa gttggccggg ccgatgccga tcttctgcat caccgccatc
     9181 cactggccgg cgaacgcgcc gaccacgatc accagcaggc acccccacag gaagttgacg
     9241 ccgagccgct ggtatttcgg ctcgtggccc gacagcgccg ggccgatgta gaggccggtg
     9301 ccgagccacg ccaccgcgat ccacagcacc gccagctgcg tgtgccaggt acgggtgatc
     9361 gagtagggca ggaagttcga cagggcgaag ccgtagacgt cgtggccttc cacctggtag
     9421 tgcgcggtga tcgcgccgag caggatctgg accaggaaca gcgccagcac cacccagaag
     9481 tacttggccg tggcgcgcat cgacggagtg atgcgcagcg tggcgaacgg gtcgctggcg
     9541 ggcaccaggt gcggctcgcc ctcgccccgg tggtgggtgc gcgcgtggtg ccagccgagc
     9601 agggcgatgc cgaggatcag gaacagcacg ctgaaggccg accacagcca cagcggcgcc
     9661 ggcggggtgt tgccgatcag cggctcgctc ggccagttgt tggtgtaggt gacgcggtgg
     9721 acggggtcgc cgggctgcac cggcgccagc acgctgctgc cgggccgctc ggtgccgcag
     9781 gcccacgccg tccaccagaa gaacgcggtg agcgcgcggc ggtgctgcgg atcggggacg
     9841 gtgtcgtcct tcatcgcgta ggcgtcgcgc agcgcggcgg tggccggatc gttgccgaac
     9901 aggctctcgt agtgcgcggc gacgttggag atggcgatga cgcggtcgcg gtcgagggtg
     9961 atcgtcgcgg tcaccgggtc gtaggtgttc cggcgcatca cctgctgcag gcggccgcgc
    10021 agcgcggcct gctgctccac gtcgagctgc gcgtagctcg ccatgctgtc gtcggcgcgt
    10081 gcccacatgt cgagcagctg catcgcctcg cggtgcagcc agtcggcgct ccagtcgggc
    10141 gcgacgtacg cgccgtgtcc ccagatcgag cccagctgca tgccgcccat cgactgccag
    10201 acttcctggc cttcctcgat gtcggccctg gtgaagacga cgctgccgtc ggtcgacacc
    10261 acgttctcgg ggatcggtgg cttggcctgg aagatctcgc cgccggccca tagcaggacg
    10321 ccgaaggaga ccagcagcag ggcgccgagc gccagccaca gtttccgcgt gttgctcatg
    10381 actccactcc cattggggac ggcgcatggt cgcgcgcggc gggtcaagct tgccttgacc
    10441 tgaatcaatg gaagcgggcg gtcttcgccc gcgcgcggat caatcgcgca ggatcggcgc
    10501 cgccagcgct tcgaggccgt cgcggtcgag gagtccagcg ccccgcccgg gtaagcgcag
    10561 cgcgccaggg accatgcaac ggacgaggtt cccgggtgag ccttcggcct acccggtcta
    10621 cgcgttcgcg cggatcaatc gcgcaggatc ggcgccgcca gcgcttcgag cccgtcgcgg
    10681 tcgacgagtt ccagctcgcg ccggtccacc gccagcaggc catcctgctg gaagcgcttg
    10741 agcacgcggc tgacggtttc cggggccagg cgcaggtagt tggcgatgtc ggtgcgcgcc
    10801 atcgtcagct ggaagcggtt ggccgagaag ccgcgcgcgg cgaggcggcg cgacagtccg
    10861 atcaggaacg ccgccatgcg ctggtccgcg ctccaatcgc cggcgagcag cgccgcgcgg
    10921 ccgatgtcgc ggctgagcag gcggaacagc tgggcctgca accccggcag gcgcgcggcg
    10981 agcaccgcga tcttcgggaa cgagaagcgg cacagcatca ccgtgtccag cgcgaccgcg
    11041 ttgcacggat agtgctcggc gtcgatcgcg ttgaggccga tgacctcgcc gggcaggtgg
    11101 aagccgagga cgtgctcgcg gccgtcgcgg tcgatcacgt aggtcttgac cgtgcccgcg
    11161 cgcaccgcgg cgatcgcctc gaacggatct ccttcgcgga agatgtgttc gccggcgtgg
    11221 aacgggccga tgtgttcgac cagcacgtgc aggtcgcgca gcgacgcctt gtccatgccc
    11281 tgcgagaggc aggcctggga aaaggcgcag gtcgagcaga aggtgaaggc gtcgccgtcg
    11341 tcggacagcg tgcgctggtc gatccgcggg aaggcgggct cgctcacgcc acggtgcatg
    11401 gaaccctcag atcgcgcgtg agaagcgcgg ggtggccacg gtggccggct ggtcgaggta
    11461 gcggtcgaag cacatcgcaa tgttacgcaa gagcagccgt ccttgcgcgg tcaccgcgat
    11521 ccgcccgctt tcccggcgga ccagcccgtc ggcccgcagc ggctccagcc gctccagcgc
    11581 ctgggcgaaa tactcgtcga agtcgatcgc gtagcggcgc tccagcgcgc cgatcgggat
    11641 ctcgccctgg cacatgagct gctggatcag gtcggcgcgc agctggtcgt cctcgctgag
    11701 gcgcatgccg cggaacaccg gcaggcggcc ctcgtcgatg gcgagctgcc agctcggcag
    11761 gtcgcgcggg ttctggctga agctgtcgcc gacgtggctg atcgcgctga cgcccaggcc
    11821 gacgaggtcg ctgtcggcgt gggtggtgta gcccatgaag ttgcggtgca ggccgccgcg
    11881 ggcctgggcg atggcgaggt cgtcgtcggg cagggcgaag tggtccatgc cgatgtacac
    11941 gtagccggcc tcggtgagct tctcgatcgc cagctgcagc aggccgagct tggtctcggc
    12001 gtcggggagg tcggccgcgt cgatctgccg ctgcggcttg aatagctcgg gcaggtgcgc
    12061 atagctgtac accgcgatgc ggtccgggcg catgccggcg acgaggtcga gggtgcccgc
    12121 gaagccgtag gcgttctgct tcggcaggcc gtagatcagg tcgacgttga ccgagcggaa
    12181 gcccgccgtg cggcaggctt cgacggccgc gcgggtttcc gccacggtct ggatgcggtt
    12241 gaccgccgcc tgcaccagcg ggtcgaaatc ctgcacgccg aagctggcgc ggttgaagcc
    12301 gagccggccc atcgcggcga tgtcctcgcc ggtgacgaag cgcgggtcga tttcgatcga
    12361 gatgtcgcgc tcgggcgagt ccgagaaatg aaaatgacgg cgcagcgaat cgagcacgtc
    12421 gccgagctgc gccggcgaga ggaagttggg cgtgccgcca ccgaagtgga cctggatgac
    12481 ttcgcggtcg cggtcgaaca gcgccgcggt caggtcgatc tcccggtaca gccgggtgag
    12541 gtaggtctcc gcgcggccga ggtcgcgggt gatgatgcgg ttgcagccgc agtagaagca
    12601 ggggctgaag cagaacggca cgtgcacgta cagcgagagc cggcgcggga tcgggtcgcc
    12661 gttgctggcc agcgcggcct ctcgcagctg cgcctcgccg aaggcgctgc tgaattgcgg
    12721 cgcggtcggg taggaggtgt agcgcggccc gggccggtcg tagcggcgga ggagctcggc
    12781 ggagaagaac gggggtgtgg ccatgcggag caggctaggg ggaccacccc cggggcgcct
    12841 tgatccggat caaccctccc tccgctcccg gagacacccc cacccgagtc catgtagggt
    12901 ttttccgacc actcggcgtg gcgacatccg actgcaatcc ggccgtcacc ggcgcagcct
    12961 agcgtggcga cagggccccg caggcggccc gccgcacgca gtcgcggcac gcagtcggag
    13021 cagttccatg gaacgttcgt tcatcaccgt caagcccgac cccgacgggt ggatgctggt
    13081 cgcgcccgat gcccgggcgg tgcactaccg cgaccagtcc gcggccctcg aggccgccac
    13141 gcgcatgacc caggcgctgc acgaggtgcg cggcaggccg ttcggggtcg agctgcagat
    13201 ggcctgcggc gatcgcgtgc tggtggcgcg ccgcggctag gacggggcca ggggatccgt
    13261 caacgcgcgg aagcgtgtcc ccgctgcgga agtacggcgg ca
//
LOCUS       DATIQC010000311         4853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_373793, whole genome shotgun sequence.
ACCESSION   DATIQC010000311 DATIQC010000000
VERSION     DATIQC010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4853
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373793"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..756)
                     /locus_tag="VLM17_06640"
     CDS             complement(100..756)
                     /locus_tag="VLM17_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HSR65262.1"
                     /translation="MAGPLRIDFVSDVSCPWCAVGLASLQQALARVPELEVELHFQPF
                     ELNPQLGPGGEDAIGHLTRKYGMSEAQARANGEVIRQRGAEYGFTFDLDRRERVYNTF
                     DAHRLLHWAGLEGADRQLALKQRLLRAYFAAGEDVSDHAVLARLAADAGLDDERARAI
                     LASDAYAEDVRLHEQFFAAHGIQAVPSVILDRRLLVQGGQPPEVFEQALRHAAETRTG
                     "
     gene            954..2180
                     /locus_tag="VLM17_06645"
     CDS             954..2180
                     /locus_tag="VLM17_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019339778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043107 - type IV pilus-dependent motility
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilT/PilU family type 4a pilus ATPase"
                     /protein_id="HSR65263.1"
                     /translation="MHKLLAAMAKAGGSDLFVASDYPPSMKAHGAMTPLSQQKLTAEV
                     TAQLANALMTAKQREEFAREMECNFAIVVPGVSRFRVNVFVQQGAVGMVLRTIAAEIP
                     NFEMLRLPPVLKDVVMEKRGLVLVVGGTGSGKSTSLAAMIDHRNRTSAGHIITVEDPV
                     EYAHKSQKSLVTHREVGVDTHSWHHALKNTLRQAPDVILVGEIRDAETMEHAIAFAET
                     GHLCLSTLHANSASQTMERIINFFPEERRTQLLMDLSANLRAIVSQRLVRTEDGKGRV
                     AAIEILLNTPTIAEKIFKGEFNELKGVMNRSRELGMRTFDWALFELYNEGLISYEEAI
                     RNADSANELRLNIKLKSRRGEPAAAAGVTLELDEAPSPEEVEALRKEELRRQQEKREE
                     LELARLQAAKATARES"
     gene            2408..3397
                     /locus_tag="VLM17_06650"
     CDS             2408..3397
                     /locus_tag="VLM17_06650"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR65264.1"
                     /translation="MIASGAFILALTGLFEATGLAAGIGYPWWVVELAALAIAGCALA
                     IWHIAAWPVRLLLTLLATALAGMFMSIPVPGTPPVPLAVRTALFQLLPIALLALLARP
                     LSIAAMIATVMALASLRAVLHGVPSAGAALYWLFTATSIGFGLLLGSYVTDFAVSTFR
                     IRQRLRRQAVTDELTGLANRAGWNRDAGEAYADAVRRGGPLSFVFFDIDRFKAINDTF
                     GHATGDTVLQQLGATLRERLPPRAQAARLGGEEFVVLLADQAPEAVEGYAQRVRAEFA
                     QAASAQGATVSAGVAHRQAGESMGQHLRRADLALYEAKAGGRDRLVVSRVDAP"
     gene            complement(3462..>4853)
                     /locus_tag="VLM17_06655"
     CDS             complement(3462..>4853)
                     /locus_tag="VLM17_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HSR65265.1"
                     /translation="GRFEIVGTPTFSLTEDDQTKPLTQGEQIAVRASMDGTRKIDIQN
                     APLVFVGYGVKAPERNWDDFKGVDLHGKIGVVLVNDPDFEAGQGDFGGKAMTYYGRWT
                     YKYEEAARQGATGLLIVHETDPASYGWNTVKNSNTNAQFDIVRADAHAAHVPLEGWIT
                     RDLAVDLFKRAGLDFDALKKQAQTRAFKPVALAGETLSAHYAVDSKVITSHNIVGRIE
                     GSKHPKETVIYSAHWDHLGVGAPDAKGDTIYNGAVDNATGTAALIELARAFGKAPRPQ
                     RSVVFLNVTAEEKGLLGSEYYASNPLYPLGKTVAVLNMDALDPNGPKRNFTTSGSAQQ
                     DLLDQTVATAKKEGLAYATDPNPGAGHFFRSDHFPFAKKGVPAISYGSGNDWVDGGVA
                     AGEAAEKAYVTERYHQPADQWEASWPFTGMVQDLTLLYTVGDDLANSHAWPNWAKDSE
                     FRGARDTTADKRH"
BASE COUNT          685 a         1705 c         1713 g          750 t
ORIGIN      
        1 gcgcgagctt cttggtttcc ccgcgcagga gcctgcgaaa ccgtcagccg ttcgtggcga
       61 gcccgtcgaa ccatgaacgg cgcggctccg gtcgccatct caccctgttc gcgtttccgc
      121 cgcatgccgc aacgcctgct cgaacacttc cggcggctgc ccaccctgca ccagcaggcg
      181 gcggtcgagg atcaccgacg gcaccgcctg gatgccgtgc gcggcgaaga actgctcgtg
      241 caggcgcacg tcctcggcat aggcgtcgga ggcgaggatg gcgcgggcgc gttcgtcgtc
      301 caggccggcg tcggcggcca ggcgggcgag caccgcgtgg tcggacacgt cttcgccggc
      361 ggcgaaatac gcgcgcagca gccgctgctt gagcgccagc tgccggtccg cgccttccag
      421 cccggcccag tgcagcaggc ggtgggcatc gaaggtgttg tagacccgct cgcggcggtc
      481 caggtcgaag gtgaagccat attcggcgcc gcgctggcgg atcacctcgc cgttggcgcg
      541 cgcctgcgcc tcgctcatgc cgtacttgcg ggtgaggtgg ccgatcgcgt cctcgcctcc
      601 cgggcccagc tgcgggttca gttcgaacgg ctggaagtgg agctcgacct ccagctccgg
      661 cacccgcgcc agcgcctgct gcagcgaggc cagcccgacg gcgcaccacg ggcaggacac
      721 gtcggacacg aagtcgatgc gcagcggccc ggccatggga tgcctgcgtc acgcggcgac
      781 ggcgccgctt cggatagatg cggtcgggac ggcggcaatc aaggtccgcg ccgcgtggcc
      841 gttaccggtg tgcgtccacg cgcggcggcc ggccttgcgg ccgccgcgcg tgcgacaccc
      901 ggcccccgac ggagcatccc atggcgctcg gcgaagagca ggcgcgcgac tacatgcaca
      961 agctgctggc ggccatggcc aaggccggcg gctccgacct gttcgtcgcc agcgactatc
     1021 cccccagcat gaaggcgcac ggggccatga ccccgctgtc gcagcagaag ctgaccgccg
     1081 aggtcaccgc gcagctcgcc aatgcgctga tgaccgccaa gcagcgcgag gagttcgcgc
     1141 gcgagatgga gtgcaacttc gccatcgtgg tgccgggcgt gtcgcgcttc cgcgtcaacg
     1201 tgttcgtgca gcagggcgcg gtcggcatgg tgctgcgcac gatcgccgcc gagatcccga
     1261 acttcgagat gctgcgcctg ccgcccgtgc tcaaggacgt ggtgatggag aagcgcggcc
     1321 tggtgctggt ggtgggcggc accggctcgg gcaagtcgac ctcgctggcg gcgatgatcg
     1381 accaccgcaa ccgcacctcg gccggccaca tcatcaccgt cgaggatccg gtcgaatacg
     1441 cgcacaagtc gcagaagtcg ctggtcaccc accgcgaggt cggcgtcgac acccacagct
     1501 ggcaccacgc gctgaagaac accctgcgcc aggcgccgga cgtgatcctg gtcggcgaga
     1561 tccgcgacgc cgagaccatg gagcacgcga tcgcgttcgc cgagaccggg catctctgcc
     1621 tgtccaccct gcacgccaac agcgcgtcgc agacgatgga acggatcatc aacttcttcc
     1681 cggaggaacg gcgcacgcaa ttgctgatgg acctgtcggc caacctgcgc gcgatcgtgt
     1741 cgcagcgcct ggtccgcacc gaggacggca agggccgcgt ggccgcgatc gagatcctgc
     1801 tcaacacgcc caccatcgcc gagaagatct tcaagggcga gttcaacgag ctcaagggcg
     1861 tgatgaacag gtcgcgcgag ctcggcatgc gcaccttcga ctgggcgctg ttcgagctct
     1921 acaacgaagg gctgatcagc tacgaggagg cgatccgcaa cgccgattcg gcgaacgagt
     1981 tgcgcctgaa catcaagctg aagagccgcc gcggcgagcc ggccgccgcc gccggggtga
     2041 ccctggaact ggacgaggcg ccctcgcccg aggaagtgga ggcgctgcgc aaggaggagc
     2101 tgcgccggca gcaggagaag cgcgaggagc tggagctggc gcggctgcag gccgcaaagg
     2161 ccaccgcccg cgaaagctga gcgtgcgcgg cgcggccgct ttcacgcggc cggcgctagt
     2221 gtccacgcgg agtggacccc ggactgcgcg cctgcccacc aaccaccctc caccgccgcg
     2281 tgcccggaac ctcctgccgg cgctgtcccg gccgtggggc gggcgggccc tgcgggaact
     2341 ggatccggac gaacgccggc gcctactcga cggccgcgtc gaggcgacgc gcccgatcgt
     2401 cagcggggtg atcgccagcg gggcgttcat cctggcgttg accggcctgt tcgaagccac
     2461 cggactcgcg gccggcatcg gctatccctg gtgggtcgtc gaactcgccg cgctggcgat
     2521 cgccggttgt gcgctggcga tctggcacat cgccgcctgg ccggtgcggc tgctgctgac
     2581 gctgctggcg accgcgctgg ccggcatgtt catgtcgatc ccggtgcccg gcacccctcc
     2641 cgttccgctc gcggtgcgca ccgcgctgtt ccagctgctg ccgatcgcgt tgctggcgct
     2701 gctggcgcgg ccgctgtcga tcgcggcgat gatcgcgacc gtgatggcgc tcgcttcgct
     2761 gcgcgcggtg ctgcacggcg tgccgtcggc gggcgccgcg ctgtactggc tgttcaccgc
     2821 gacctccatc ggcttcgggc tgctgctggg cagttatgtc accgatttcg cggtcagcac
     2881 gttccgcatc cgccagcgcc tgcgccggca ggcggtgacc gacgagctga ccggcctggc
     2941 caaccgcgcc ggctggaacc gcgatgcggg cgaggcctat gccgatgccg tgcgccgtgg
     3001 cggaccgctg agcttcgtgt tcttcgacat cgaccgcttc aaggcgatca acgacacctt
     3061 cggccatgcg accggcgaca cggtactgca gcagctcggc gccaccctgc gcgagcgcct
     3121 gccgccgcgt gcgcaggccg cgcgcctggg cggcgaggag ttcgtggtgc tgctggccga
     3181 ccaggcgccc gaagccgtcg aaggctatgc gcagcgggtg cgcgccgaat tcgcccaggc
     3241 cgcctccgcg cagggcgcga cggtcagcgc cggcgtcgcc caccggcagg cgggcgaaag
     3301 catgggccag cacctgcgcc gcgccgacct cgcgctctac gaggcgaagg ccggcggccg
     3361 cgaccggctg gtggtcagcc gcgtcgacgc gccctgagtg cgggccgaaa acacaccggg
     3421 ccggaaattc cggcccgtcg cctgctgcgg tgcgtcgcgg ctcagtgccg cttgtccgcg
     3481 gtcgtgtcgc gcgcgccgcg gaactccgag tccttcgccc agttgggcca cgcgtgcgaa
     3541 ttggcgaggt cgtcgccgac ggtatagagc agggtcaggt cctgcaccat gccggtgaac
     3601 ggccagctcg cctcccactg gtcggccggc tggtggtagc gctcggtgac gtaggccttc
     3661 tccgccgctt cgcccgcggc cacgccgccg tcgacccagt cgttgccgga gccgtaggag
     3721 atcgccggca cgcccttctt ggcgaacggg aaatggtcgg agcggaagaa gtggccggcg
     3781 cccggattgg gatcggtcgc gtacgcgagg ccttccttct tcgcggtggc gacggtctgg
     3841 tcgagcaggt cctgctgcgc gctgccggag gtggtgaagt tgcgcttcgg cccgttgggg
     3901 tcgagggcgt ccatgttcag caccgccacc gtcttgccga gcgggtacag cgggttgctg
     3961 gcgtagtact ccgagccgag caggcccttc tcctcggcgg tgacgttgag gaacaccacc
     4021 gaacgctgcg gccgcggcgc cttgccgaac gcccgcgcca gctcgatcag cgcggcggtg
     4081 ccggtcgcgt tgtcgaccgc tccgttgtag atggtgtcgc ccttggcgtc cggcgcgcca
     4141 acgccgagat ggtcccagtg cgcgctgtag atcaccgttt ccttcgggtg cttgctgccc
     4201 tcgatgcggc cgacgatgtt gtgcgaggtg atcaccttgc tgtcgaccgc atagtgcgcc
     4261 gacagcgtct cgccggcgag cgccaccggc ttgaacgcgc gggtctgcgc ctgcttcttc
     4321 agcgcgtcga agtccaggcc cgcgcgcttg aacaggtcca ccgcgaggtc gcgggtgatc
     4381 cagccttcca gcggcacgtg cgccgcgtgc gcatcggcgc gcacgatgtc gaactgcgcg
     4441 ttggtgttgg agttcttgac cgtgttccag ccgtacgacg ccgggtcggt ctcgtgcacg
     4501 atcagcaggc cggtggcgcc ctggcgcgcg gcttcctcgt acttgtaggt ccagcggccg
     4561 tagtaggtca tggccttgcc gccgaagtcg ccctgcccgg cctcgaagtc cgggtcgttg
     4621 accagcacca cgccgatctt gccgtgcagg tccacgccct tgaaatcgtc ccagttgcgc
     4681 tccggcgcct tgacgccgta accgacgaac accagcgggg cgttctggat atcgatcttg
     4741 cgggtgccat ccatcgacgc gcgcacggcg atctgctcgc cctgggtcag cggcttggtc
     4801 tggtcgtcct cggtcaacga gaaggtcggc gtgccgacga tctcgaagcg gcc
//
LOCUS       DATIQC010000312         4143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_621608, whole genome shotgun sequence.
ACCESSION   DATIQC010000312 DATIQC010000000
VERSION     DATIQC010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621608"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..486)
                     /locus_tag="VLM17_06660"
     CDS             complement(<1..486)
                     /locus_tag="VLM17_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011408972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR65266.1"
                     /translation="MTIRVFLVDDHALVRAGMRMILSGETDIEVVGEAESGEEALPQV
                     RRLKPDVVLCDLHLPGVSGLEVTERIVRGDHGTRVIVVSVLEDGPLPKRLLEVGASGY
                     VGKGGDAAELLRAVRDVARGKRYLASSIAQNLALSGIGGDGSPFDALSPRELEIAMML
                     TQ"
     gene            603..690
                     /locus_tag="VLM17_06665"
     tRNA            603..690
                     /locus_tag="VLM17_06665"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:637..639,aa:Ser,seq:tga)
     gene            complement(891..1778)
                     /locus_tag="VLM17_06670"
                     /pseudo
     CDS             complement(891..1778)
                     /locus_tag="VLM17_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014503741.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
     gene            1907..2488
                     /locus_tag="VLM17_06675"
     CDS             1907..2488
                     /locus_tag="VLM17_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012480714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HSR65267.1"
                     /translation="MRLLHLDSSALGAGSVTRELSAAIVARWQATVPGLEVAYRDLDS
                     QPLPHLTGPVLGQADPAVAAESERVLQQFLDADVVVVGAPMYNFGIPSTLKAWIDRIA
                     VAGRTFRYTATGPEGLAGGKRVIVASGRGGVYGDASPADFQEAYLRQVFGFLGIAELE
                     FVRAEGVALGPNERADALAAAQAAIPAPLARAA"
     gene            2565..2969
                     /locus_tag="VLM17_06680"
     CDS             2565..2969
                     /locus_tag="VLM17_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HSR65268.1"
                     /translation="MFNARNGTELLGRILLASLFLLSGLGKITAYPATAGYMASVGVP
                     GALLPFVIGLEVLGAVALIAGWNTRAVALLLAGFTVASALLFHNDFADQMQRIMFLKN
                     VSIAGAFLLVAAHGAGPLSLDARKAKAGVARA"
     gene            complement(2998..3441)
                     /locus_tag="VLM17_06685"
     CDS             complement(2998..3441)
                     /locus_tag="VLM17_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65269.1"
                     /translation="MDAGWNPEDETPPAELPPDDFGPVTMHWDRSIPGVLKVVIRGIG
                     GDPEAALRRWMYNFALAREAGLRRILVVLELDGPLIPEPQMARMIAAVATADVGEFRV
                     AIVQTRMQRQSHDELGILIAIEHGISARVFPEEAPALVWLRYGER"
     gene            complement(3447..3929)
                     /locus_tag="VLM17_06690"
     CDS             complement(3447..3929)
                     /locus_tag="VLM17_06690"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017355362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HSR65270.1"
                     /translation="MTTAYDFSATGLDGQPQALAQYAGKVLLIVNVASECGFTPQYAG
                     LEELWRGYRDRGLVVLGFPCDQFGHQEPGTEAQIQEFCTLNFGVDFPMFAKIDVNGDK
                     AHPLWRWLKEEKGGLLGIDAIKWNFTKFLVGRDGQVLKRYAPTTEPRAIAADIEAALG
                     "
     gene            complement(3931..>4143)
                     /locus_tag="VLM17_06695"
     CDS             complement(3931..>4143)
                     /locus_tag="VLM17_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018973309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65271.1"
                     /translation="YARVLDDRGSVTQGKRADLVLFDGDPTADISDIRKVALVLKDGD
                     AYYPSEIDTALGIRPFAEPVRVQEGQ"
BASE COUNT          573 a         1510 c         1408 g          652 t
ORIGIN      
        1 ctgggtcagc atcatcgcga tctccagctc gcgcggcgac agcgcgtcga acggcgaacc
       61 atccccgccg atgcccgaca gggcgaggtt ctgcgcaatg ctgctggcga ggtagcgctt
      121 gccgcgcgcc acgtcgcgca ccgcgcgcag cagctcggcc gcatcgccgc ccttgccgac
      181 gtagcccgac gcgcccacct ccagcagccg cttgggcagc ggcccgtcct cgagcaccga
      241 caccacgatg acgcgcgtgc cgtggtcgcc gcgcacgatg cgctcggtga cttccagccc
      301 gctcacgccc ggcaggtgca ggtcgcacag cacgacgtcg ggtttcagcc ggcggacctg
      361 cggcagcgcc tcctcgccgc tttcggcctc gccgacgacc tcgatgtcgg tttcgcccga
      421 caggatcatg cgcatccccg cgcgcacgag tgcgtggtcg tcgaccagga atacccgtat
      481 cgtcatctcg ccatcccctt tgtccccgcg gcgagcgtac gaagtgccgc tctcccgggc
      541 aataacgtga gcggaggtgg cgggcggtcg ctagaatgcg cgccgcctgc aggacgaccg
      601 atggaagcgt ggccgagtgg ttgaaggcac cggtcttgaa aaccggcaac gggcaaccgt
      661 tcgtgggttc gaatcccacc gcttccgcca aacctagagc gccatgtgcg caccgctcac
      721 cgggcgaata tcgctcgccc gcctgacgag cgcctgcggc gcagtcacca cctcctcgca
      781 gcggttcaag ccggctgcgc gattccgccc tgcgccagcc ccgcacgcgc cgccacgggt
      841 gtccgcccct tgcactccac gcactcctcg tgcgcggcgg tgagcagcgg tggcatctgc
      901 tcggcgagga agtcgatgaa cacgcgcacc gccggcagca gcccgcggcg ggaggcgaac
      961 acggcgtgga agatgccctg cggcaggcgc cattcgggca gcaccacttc cagcgtgccg
     1021 ttgcgcacct gctcgctgca catggtttcc ggcagcaggg tgatgccgac gccctgctcg
     1081 gccagcgagc gcgccatcgg gaagtcgaag cccgagacgc gcggatgcag ttccacccgc
     1141 cgcaccgcgc catccgggcc atgcagctcc cagcgctggc gcgcctcgtc ctcgctgatg
     1201 ctcagggtga cgtgccgggc gagttcgtcg ggatcgcgcg gccggcccat gcggtcgagg
     1261 tacttcgggc tggcgaccag cagctcctgg atctggccga agctgcgcat caccaggctg
     1321 ccgtcgtcgt ccaggcgcgt gcgcacgcgc agcgcgacgt cgaagccttc gttgatcagg
     1381 tcgacgcggc ggttgctgac gtgcagttgc aggcgcacct ccggataacg cgcgaggaac
     1441 tccggcagca gcttgggcag ctgcgtctgc gccagcccca ccggcacgct cacccgcacc
     1501 acgccgcgcg gctcggcgct gaggcgctcg accacctcgc gcgcggcctg cgcctcggcc
     1561 agcatcgtct gcgcgtggcg gtacacgctg ttgccgacgt cggtgaccgc gaagcggcgc
     1621 gtcgagcgct gcagcaggcg cacgccgagg tcgctctcga gctgggcgat gcgtcggctc
     1681 aaccgtgact tggggatgcc gagcgcgcgc tcggcggcgg cgaacccgcc gtggtcgacg
     1741 accatggcga agtagtagag gtcgttgagg tcctgcatgg ggcagcttcc ctttgttccg
     1801 cagttggaac gatcagtgat attacgcctc gtttatccca gaaaggcaac gacttatctt
     1861 ggtcgggccg cggcgctcct gccgcccccg atgcgaggtt ttccccatgc gcctgctcca
     1921 tctcgactcc agcgccctcg gcgccggttc cgtcacccgc gagctctccg cggcgatcgt
     1981 cgcgcgctgg caggccacgg tgccggggct cgaggtcgcc taccgcgacc tcgattcgca
     2041 gcccctgccc cacctgaccg gccccgtgct cggccaggcc gatccggcgg tggccgccga
     2101 atccgaacgg gtgctgcagc agttcctcga cgccgacgtc gtggtggtcg gcgcgccgat
     2161 gtacaacttc gggattccct cgacgctgaa ggcctggatc gaccgcatcg cggtggccgg
     2221 gcgcaccttc cgctacaccg cgacggggcc cgagggcctg gccggtggca agcgggtgat
     2281 cgttgccagc ggccgcggcg gcgtctacgg cgacgccagc ccggccgatt tccaggaggc
     2341 ctacctccgc caggtgttcg gtttcctcgg gatcgccgaa ctcgagttcg tgcgcgccga
     2401 aggcgtggcg cttggcccga acgagcgcgc cgacgcgctg gcggccgcgc aggcggcgat
     2461 ccccgcgccg ctggcccgcg ccgcctgagc gacgcctccg cggggctcca gtgcccccgc
     2521 ggcccgcgcg ccattcccgt cattccattt gcgaggaccc acccatgttc aacgcgcgca
     2581 acggaaccga actgctcggc cgcatcctgc tcgcctccct tttcctgctc tcgggtctcg
     2641 gcaagatcac cgcctacccg gcgacggcgg gctacatggc ctccgtcggc gttcccggcg
     2701 ccctgttgcc gttcgtcatc ggactcgagg tgctgggcgc ggtggcgctc atcgccggct
     2761 ggaacacgcg ggccgtggcc ctgctgctcg cgggcttcac ggtggcgagc gccctgctct
     2821 tccacaacga cttcgccgac cagatgcagc ggatcatgtt cctcaagaac gtctccatcg
     2881 ccggtgcgtt cctgctcgtc gccgcccatg gcgccggccc gctgagcctg gatgcacgga
     2941 aggcgaaggc cggcgtggcc agggcctgac ttccgcagcg cggcggctac ggcgagctca
     3001 gcgctcgccg tagcgcagcc acaccagggc cggcgcctct tcgggaaaca cgcgcgcact
     3061 gatgccgtgc tcgatcgcga tcaggatccc gagctcgtcg tggctctgcc gctgcatccg
     3121 ggtctgcacg atcgcgacgc ggaactcgcc gacgtcggcg gtggcgacgg cggcgatcat
     3181 gcgcgccatc tgcggttccg ggatcagcgg cccgtcgagt tccaggacca cgaggatgcg
     3241 gcgcagcccg gcctcgcggg cgagggcgaa gttgtacatc cagcggcgca gggccgcctc
     3301 ggggtcgccg ccgatgccgc ggatgaccac cttcagcacg ccggggatgc tgcggtccca
     3361 atgcatcgtc accgggccga agtcgtccgg cggcaactcc gccggcggcg tttcgtcctc
     3421 ggggttccag cccgcatcca tgggcgtcaa ccgagcgccg cttcgatgtc ggcggcgatc
     3481 gcgcgcggct cggtcgtcgg tgcgtagcgc ttcagcacct gcccgtcgcg gccgaccagg
     3541 aacttggtga agttccactt gatcgcgtcg atgccgagca gcccgccttt ctcttccttc
     3601 agccagcgcc acagcgggtg ggccttgtcg ccgttgacgt cgatcttggc gaacatcggg
     3661 aagtcgacgc cgaagttcag cgtgcagaac tcctggatct gcgcctcggt gccgggttcc
     3721 tggtggccga actggtcgca ggggaagccg agcaccacca gcccgcggtc gcggtagccg
     3781 cgccacagtt cctccaggcc cgcgtactgc ggggtgaagc cgcattcgga cgccacgttg
     3841 acgatcagca gtaccttgcc ggcgtactgc gccagcgcct gcggctggcc gtcgaggccg
     3901 gtggcggaga aatcgtaggc ggtcgtcatg tcactggccc tcctgcacgc gaacgggctc
     3961 ggcgaacggg cggatgccga gcgcggtgtc gatttcgctc gggtagtagg catcgccgtc
     4021 cttgagcacc agcgcgacct tgcggatgtc ggagatgtcc gccgtggggt cgccgtcgaa
     4081 caggacgagg tcggcgcgct tgccctgggt caccgagccg cggtcgtcga gcacgcgcgc
     4141 gta
//
LOCUS       DATIQC010000313         1922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_621639, whole genome shotgun sequence.
ACCESSION   DATIQC010000313 DATIQC010000000
VERSION     DATIQC010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621639"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1413)
                     /gene="rhlB"
                     /locus_tag="VLM17_06700"
     CDS             complement(<1..1413)
                     /gene="rhlB"
                     /locus_tag="VLM17_06700"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: protein motif:HMM:NF003390.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HSR65272.1"
                     /translation="MSDKPLTDISFSQFELHPALLAGLEAAGFSRCTPIQALTLPVAL
                     PGRDVAGQAQTGTGKTLAFLITVVNRLLTRPALAERKPEDPRALILAPTRELAIQIHK
                     DAVKFASDLGLKFALVYGGVDYDKQRAQLQAGADVIIATPGRLIDYVKQHKVVSLHAC
                     EICVLDEADRMFDLGFIKDIRFLLRRMPIRTERQTLLFSATLSHRVLELAYEHMNEPE
                     KLVVETESVTAARVRQKLYYPADEEKIPLLIGLLSRSEGARTMVFVNTKAFVERVARA
                     LERAGYRVGVLSGDVPQKKRESLLKKFQAGQLELLVATDVAARGLHIDGVSHVYNFDL
                     PFDAEDYVHRIGRTARLGAEGDAISFACERYGMSLPDIEAYIDQKIPGEHVTPEMLVA
                     LPRAPRPQVAAAGAEGEGEEEESIGAIFKEAREQRAADEQRRGGGRKAGPGAGRGRGD
                     ARRGGDGQRGASSEGRGPRPP"
     gene            1638..>1922
                     /gene="trxA"
                     /locus_tag="VLM17_06705"
     CDS             1638..>1922
                     /gene="trxA"
                     /locus_tag="VLM17_06705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HSR65273.1"
                     /translation="MSDKVIHATDADFDSVVLQSDQPVLVDFWAQWCGPCKMIAPALD
                     ELAATYDGRAKVVKVDIDQNRAVAMKYHVRSIPMLLVFKDGQVQGTQIGAV"
BASE COUNT          270 a          654 c          700 g          298 t
ORIGIN      
        1 cggcggacgc ggcccgcggc cttcggacga cgcgccgcgc tggccgtcgc cgccacggcg
       61 cgcgtcgccg cgcccgcgac cggcgcccgg gccggccttg cgcccgccgc cacggcgctg
      121 ttcgtcggcg gcgcgttgtt cgcgggcttc cttgaagatc gcgccgatgc tttcctcttc
      181 ttcgccctca ccctcggccc cggccgcggc gacctgcggg cgcggcgcgc gcggcagcgc
      241 gaccagcatc tccggcgtca cgtgctcgcc cgggatcttc tggtcgatgt aggcctcgat
      301 gtcgggcaac gacatgccgt agcgctcgca ggcgaagctg atcgcatcgc cttcggcgcc
      361 gaggcgcgcg gtgcggccga tgcggtggac gtagtcctcg gcatcgaacg gcaggtcgaa
      421 gttgtagacg tgcgacacgc cgtcgatgtg caggccacgc gctgcgacgt cggtcgccac
      481 cagcagctcg agctggccgg cctggaactt cttcagcagc gactcgcgct tcttctgcgg
      541 cacgtcgccc gacagcacgc cgacccggta gccggcgcgc tccagcgcgc gcgcgacccg
      601 ctccacgaac gccttggtgt tgacgaacac catcgtgcgc gcgccttccg aacgcgagag
      661 caggccgatc agcagcggga tcttctcctc gtcggccggg tagtagagct tctggcgcac
      721 gcgcgcggcg gtgaccgact cggtctcgac gacgagcttt tccggctcgt tcatgtgctc
      781 gtaggcgagc tcgagcacgc ggtggctgag cgtcgccgag aacagcaggg tctgccgttc
      841 ggtgcggatc ggcatgcgcc gcagcaggaa gcggatgtcc ttgatgaagc cgaggtcgaa
      901 catgcggtcc gcctcgtcca gcacgcagat ctcgcaggcg tgcagcgaga cgaccttgtg
      961 ctgcttgacg tagtcgatca ggcggccggg cgtggcgatg atcacgtcgg cgccggcctg
     1021 cagctgggcg cgctgcttgt cgtagtcgac gccgccgtag acgagggcga acttcagccc
     1081 gaggtcggac gcgaacttca ccgcgtcctt gtggatctgg atggcgagtt cgcgggtcgg
     1141 cgcgaggatc agcgcgcgcg gatcctccgg cttgcgctcg gccagcgccg ggcgggtgag
     1201 caggcggttc accaccgtga tcaggaacgc gagcgtcttg ccggtgccgg tctgcgcctg
     1261 gccggcgacg tcgcgcccgg gcagcgcgac cggcagggtc agcgcctgga tcggggtgca
     1321 gcgcgagaag ccggcggcct cgaggccggc cagcagcgcc ggatgcagtt cgaactgcga
     1381 gaaggagatg tcggtaaggg gcttgtcgct catgcgattg gggtgcgatc cggaaactgc
     1441 ggcgcggcgg gcgcgcttgc gtgggcggcg tccgcgaagc agactgccgg ggcgttgcag
     1501 gggggcgcgt cgcgccttga aacccctgcg gaaacgcccc agtctagcag cacgccgcgt
     1561 gtaggcgccg cgcgcatccg cttgatttgc ctagcccgcg gttcatccgc gacaccgtcc
     1621 cgccagcagg agcccccatg agcgacaagg tcatccacgc caccgacgcc gacttcgaca
     1681 gcgtcgtcct ccagtcggac cagccggtgc tggtggactt ctgggcgcag tggtgcgggc
     1741 cctgcaagat gatcgccccg gcgctggacg agctggcggc gacctatgac gggcgggcga
     1801 aggtcgtgaa ggtcgacatc gaccagaacc gcgcggtggc catgaagtac cacgtgcgtt
     1861 cgatcccgat gctgctggtc ttcaaggacg gccaggtgca gggcacccag atcggcgcgg
     1921 tc
//
LOCUS       DATIQC010000314         2975 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_586480, whole genome shotgun sequence.
ACCESSION   DATIQC010000314 DATIQC010000000
VERSION     DATIQC010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2975
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_586480"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VLM17_06710"
     CDS             <1..403
                     /locus_tag="VLM17_06710"
                     /inference="COORDINATES: protein motif:HMM:NF015531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HSR65274.1"
                     /translation="YTRPVYVLTSRRTFSGGEEAAYDLQTQKRATLVGETTGGGANPG
                     EGYALAHGFAAFIPNGRSINPVTHANWEHTGVRPDIAVPAAEAQTAAHVAILRGLIAA
                     NHDAEAKADLQEILAKVAAGIADPPVYTLQR"
     gene            complement(470..1048)
                     /locus_tag="VLM17_06715"
     CDS             complement(470..1048)
                     /locus_tag="VLM17_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HSR65275.1"
                     /translation="MLPFDPPLPAGLQCAWLAHRHGEAAEPLVRAWLGERLACPPEAV
                     VLSRDARGRPRLAHPAIDVNWAHSGDGLLAASGEGLRVGIDLERLHARPRALELARRF
                     FAASECDWLLAQPATARDTAFLRLWCAKEAVLKAHGHGLSFGLHRLVFVERDGALQLA
                     DADPALGGAADWTLREFVPHAGYRAALAWRPG"
     gene            1145..2500
                     /locus_tag="VLM17_06720"
     CDS             1145..2500
                     /locus_tag="VLM17_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSR65276.1"
                     /translation="MSAVIQPAGLHGSPLAIGAEARAIAFDARGAVPLARFLAQVRAL
                     AALLPAGRHAVNLCEDRYRFLVAFCAVAVRGQTTLLPPSRAPAAVDDALHRHADSYCL
                     GDAALDPAPARYWQLPAALPEQAGARPLIDDDALVAIGFTSGSTGVPKANPKTWGSFR
                     QSTAQNLAALRHLCAGAAPAPVVATVPPQHMYGIELSVLLPLLGELAVHTGRPFFPQD
                     IAQALQAAASPALLVTTPVHLRALLESDVALPPLAGIVSATAPLPAELAAAAEARLRC
                     EVREMFGSTETCVIAHRRTAVEHAWTPMPGVHLQPQPDGTLVHARHLAAPMPLADLVE
                     VDADGRFRLCGRQADLLEIAGKRASLGDLTRRLTAIPGVRDGVVLQLDPCEAGVRRIA
                     ALVVAPGLDEAAILDALRCSIDPVFLPRRLRRVEALPRNETGKLPRAALLRLLQCDNA
                     S"
     gene            2662..2928
                     /locus_tag="VLM17_06725"
     CDS             2662..2928
                     /locus_tag="VLM17_06725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HSR65277.1"
                     /translation="MNIIVWLIVGGIIGWLASMIMRTDAQQGVLLNIVVGIVGAFIGG
                     WLIGPLVGAGSINEGFSVMSLVVSLIGAIILLAIVNLFRRGRVR"
BASE COUNT          385 a         1111 c         1087 g          392 t
ORIGIN      
        1 ctacaccagg ccggtctacg tgctgacctc gcgccgcacc ttctccggcg gcgaggaggc
       61 ggcctacgac ctgcagacgc agaagcgcgc cacgctggtc ggcgaaacca ccggcggcgg
      121 cgcgaacccg ggcgagggct atgcgctcgc gcacggcttc gcggcgttca tcccgaacgg
      181 gcgctcgatc aatccggtga cccacgccaa ctgggaacac accggcgtcc ggcccgacat
      241 cgcggtgccc gcggcggagg cgcagaccgc ggcgcacgtc gccatcctcc ggggcctgat
      301 cgcggcgaac cacgacgcgg aagcgaaggc cgacctgcag gaaatcctgg cgaaggtggc
      361 ggcgggcatc gccgatccgc cggtctacac actgcaacgc tgagggtgcc ccgggcccgc
      421 gcggacccgg gccgccgcac cggccccgca cgcgggcttg cggtcgtcgt tatccgggcc
      481 gccaggccag cgcggcccgg tagcccgcat gcgggacgaa ctcgcgcagc gtccagtcgg
      541 cggcgccgcc gagcgcggga tcggcgtcgg ccagttgcag cgcgccgtcg cgttcgacga
      601 acaccagccg gtgcaggccg aacgacaggc cgtggccgtg cgccttcagc acggcttcct
      661 tggcgcacca caggcgcagg aaggcggtgt cgcgcgccgt cgccggctgc gccagcagcc
      721 agtcgcattc ggacgcggcg aagaagcggc gggccagctc cagcgcgcgc gggcgggcgt
      781 gcaggcgttc caggtcgatg cccacgcgca ggccttcgcc gctcgccgcc agcaggccgt
      841 cgccgctgtg ggcccagttc acgtcaatgg ccggatgggc caggcgcggg cggccgcggg
      901 cgtcgcgcga gagcaccacg gcctccggcg ggcaggccag gcgttcgccc agccaggcgc
      961 gcacgagggg ctcggcggct tcgccgtggc ggtgggccag ccaggcgcac tgcaggccgg
     1021 cgggcagggg cgggtcgaaa ggcagcatgc ggcttggcgg cgcgcggggg cggcagcgta
     1081 aagtaacctc cggggagcgg ctgcggccgc ggggattcaa gggcaatcgc ccagggcagt
     1141 tcgaatgtcg gcagtcatcc agccggcggg cctgcatggc tcgccgctcg ccatcggcgc
     1201 ggaagcgcgc gccatcgcct tcgatgcgcg cggcgcggtg ccgctcgcgc gtttcctcgc
     1261 gcaggtccgc gcgctcgcgg cgctgctgcc ggccgggcgc cacgcggtca acctgtgcga
     1321 ggaccgctac cgcttcctgg tcgccttctg cgcggtggcg gtgcgcgggc agaccacgct
     1381 gctgcccccc tcgcgcgcgc cggccgcggt cgacgacgcg ctgcaccggc acgcggacag
     1441 ctactgcctc ggcgacgccg cgctcgaccc cgcgcccgcg cgctactggc agctgcccgc
     1501 ggcgctgccg gaacaggccg gcgcgcgccc gctgatcgac gacgacgccc tggtcgcgat
     1561 cggcttcacc tccggcagca ccggcgtgcc gaaggccaac ccgaagacct ggggcagctt
     1621 ccgccagtcc accgcgcaga acctcgccgc gctgcgccac ctgtgcgccg gcgccgcgcc
     1681 tgcgccggtg gtggcgacgg tgccgccgca gcacatgtac ggcattgagc tgtcggtgct
     1741 gctgccgttg ctgggcgagc tcgcggtgca caccggccgc ccgttcttcc cgcaggacat
     1801 cgcgcaggcc ctgcaggcgg ccgcgtcgcc ggcgctgctg gtgaccacgc cggtgcacct
     1861 gcgcgcgctg ctcgagagcg acgtcgccct gccgccgctc gccggcatcg tctcggcgac
     1921 ggcgccgctg ccggcggaac tcgccgccgc cgcggaagcg cgcctgcgct gcgaggtgcg
     1981 cgagatgttc ggctcgaccg agacctgcgt gatcgcgcac cgccgcaccg cggtcgagca
     2041 cgcgtggacg ccgatgcccg gcgtccacct gcagccgcag ccggacggca cgctggtgca
     2101 tgcgcgccac ctcgccgcgc cgatgccgct ggccgacctg gtcgaggtcg acgcggacgg
     2161 gcgcttccgg ctgtgcgggc gccaggccga cctgctcgag atcgccggca agcgcgcgtc
     2221 gctcggcgac ctcacccggc ggttgaccgc gatccccggc gtgcgcgacg gcgtggtgct
     2281 gcaactcgac ccgtgcgagg ccggcgtgcg ccggatcgcc gcgctggtgg tggcgcccgg
     2341 actggacgag gcggcgatcc tcgacgccct gcgctgcagc atcgatccgg tgttcctgcc
     2401 gcgccgcctg cgccgcgtcg aggccctgcc gcgcaacgaa accggcaagc tgccgcgcgc
     2461 cgcgctgctg cgcctgctgc agtgcgacaa cgcttcctga cgtcgcgttg acggcctgtt
     2521 tcaaggggtt ttgcgtgcat ttcggcgcac gcgacaagcg gctgtttccc tgacgctccc
     2581 atcacggccg cctagacaga ctcgatcgcg cccccaaacg aggggagcta acagagagtt
     2641 cctacccaag gaggctggtg catgaacatc atcgtctggt tgatcgtggg cggcatcatc
     2701 ggctggctgg ccagcatgat catgcggacc gacgcgcagc agggcgtcct gctcaacatc
     2761 gtcgtcggca tcgtcggtgc cttcatcggc ggctggctga tcggaccgct ggtcggcgcg
     2821 ggctccatca acgagggctt cagcgtgatg agcctggtcg tttcactgat cggcgccatc
     2881 atcctgctcg cgatcgtcaa tctcttccgg cgcggacgcg tgcgctgacc aagcgctgcg
     2941 tgatgtcgcg aagggcccgg cgaacgccgg gcctt
//
LOCUS       DATIQC010000315         3952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_551466, whole genome shotgun sequence.
ACCESSION   DATIQC010000315 DATIQC010000000
VERSION     DATIQC010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551466"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            333..2873
                     /locus_tag="VLM17_06730"
     CDS             333..2873
                     /locus_tag="VLM17_06730"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HSR65278.1"
                     /translation="MAKNLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAV
                     DPEHGFAMRYDLIEKNEKHVEAIAKAAKTADALYLATDPDREGEAISWHIAEILKERN
                     LIGDKPLHRVVFTEITPRAIHAAMEQPRSIAAPLVDAQQARRALDYLVGFNLSPVLWR
                     KVQRGLSAGRVQSPALRMIVEREEEIEAFVAREYWSVEAECAHASQPFTAKLTRLDGK
                     KAEQFTITNAEDAEAARQRILKAAGGALHVTDVASKERKRRPSPPFTTSTLQQEASRK
                     LGFTTRRTMQVAQKLYEGVALGGEGTVGLISYMRTDSVNLSVDALSELRDVIARDYGT
                     RALPDKPNVYQTKSKNAQEAHEAVRPTSALRTPAQVARHLTDDERRLYELIWKRAVAS
                     QMVPATLNTVSVDLAAGSEHGFRASGTTVVDPGFLAVYEEGRDTKTSEDEDEGRKLPP
                     MKPGERVPLERVRADQHFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLLFRKYV
                     EMESRSFRPTDVGRAVSKFLSSHFTRYVDYDFTAKMEDELDAVSRGEEEWVPLMEKFW
                     GPFKELVADKTESVDRSEATGARELGTDPKTGKPVSVRLGRFGPYAAIGSVEDEEKPQ
                     FASLRPGQSMHTISLEEALELFKLPRKLGQSNDEEVSVGIGRFGPFAKRGGTYASLKK
                     EDDPYTIDLARAVFLIEEKEEIARNRIIKSFEGSDIQVLNGRFGPYISDGKLNGRIPK
                     DREPASLTLAEVQQLLEETGKPMRGRFGKKTVAKKAPAKAAKEPAAKKAPAKKAPARK
                     APAKKAAKKAAKKTAKTAAGKTVKKTAKKAAPRPARGGTRAGADEAPF"
     gene            2933..3499
                     /locus_tag="VLM17_06735"
     CDS             2933..3499
                     /locus_tag="VLM17_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005987994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HSR65279.1"
                     /translation="MPPSLSPAAAADRLRHGAVIAYPTEAVWGLGCDPFDEAAVLRLL
                     AIKQRPVDKGLILIAGALELFDGLLDWDRLPTDRREAVYASWPGPHTWIVPAGGRVPH
                     WITGAHDGVAVRVSAHPGVAALCAAFGGPLVSTSANLAGHPPAFSRADLDPAVVALCD
                     GVCSGETGGLSAPTAIVDARSGAQLRAG"
     gene            3585..>3952
                     /locus_tag="VLM17_06740"
     CDS             3585..>3952
                     /locus_tag="VLM17_06740"
                     /inference="COORDINATES: protein motif:HMM:NF024901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSR65280.1"
                     /translation="MSPGAVLPLMLWLAPPTPAAPPADAVTIYRCTDADGHLTLRDSP
                     CARGQAQQTRTMLRPKDAPLPPAPPARDAPRDAADREPRERIVYVQPPRPMYECVTPD
                     GERYTSETPEGHPRWVPLWTL"
BASE COUNT          671 a         1440 c         1347 g          494 t
ORIGIN      
        1 gatggtgttg ttcgaccagc cgggctccga ggcggcttat gcctggatgg aaacccagat
       61 gttcctggac gagcccgagc cggtgcactg accacacctg cgggcccgcc gccgacggcg
      121 ggcgatgggt cgactccagg ccggccacca ggtttctgga tggccgctcc tccgggagca
      181 tcgccggttc ggcttgacag cctgcccccc cgcgtgattc cactagaaaa agagacgccc
      241 gtggcccacc gccacgggcg ttgcctttcc cgccgccgtt cggcattgcc ttcacggcac
      301 gctagcccgc tccccggaac cctctccccc cgatggccaa gaacctgctc atcgtcgagt
      361 cgcccgccaa ggccaagacg atcaacaagt acctcggcaa ggacttcacc gtcctcgcct
      421 cctatggcca cgtgcgcgac ctggtgccca aggagggcgc ggtcgacccc gagcatggct
      481 tcgccatgcg ctacgacctg atcgagaaga acgagaagca cgtcgaggcg atcgccaagg
      541 ccgccaagac cgcggacgcc ctctacctcg cgaccgaccc ggatcgcgaa ggcgaggcga
      601 tcagctggca catcgccgag atcctgaagg aacgcaacct gatcggcgac aagccgctgc
      661 accgggtggt gttcaccgag atcaccccgc gcgccatcca cgccgcgatg gaacagccgc
      721 gcagcatcgc cgcgccgctg gtcgatgcgc agcaggcgcg ccgcgcgctc gactacctgg
      781 tcggcttcaa cctgtcgccg gtgctgtggc gcaaggtcca gcgcggtctg tccgccggcc
      841 gcgtgcagtc gccggcgctg cgcatgatcg tcgagcgcga agaggagatc gaagccttcg
      901 tcgcccgcga atactggtcc gtcgaagccg agtgcgcgca cgcgtcgcag ccgttcaccg
      961 ccaagctgac caggctcgac gggaagaagg ccgagcagtt caccatcacc aatgccgagg
     1021 acgccgaagc cgcgcgccag cgcatcctca aggccgcggg cggggcgctg cacgtcaccg
     1081 acgtcgccag caaggaacgc aagcgccggc catcgccgcc gttcaccacc tcgacgctgc
     1141 agcaggaagc ctcgcgcaag ctcggcttca ccacccggcg caccatgcag gtcgcgcaga
     1201 agctgtacga aggcgtggcg ctgggcggcg agggcacggt cggcctgatc agctacatgc
     1261 gtaccgactc ggtcaacctg tcggtggacg cgctctcgga gctgcgcgac gtgatcgcgc
     1321 gcgactacgg cacgcgcgcg ctgccggaca agccgaacgt ctaccagacc aagtcgaaga
     1381 acgcgcagga agcgcacgag gcggtgcgcc cgacctcggc gctgcgcacg ccggcgcagg
     1441 tcgcgcggca cctcaccgac gacgagcgcc gcctgtacga gctgatctgg aagcgcgcgg
     1501 tggcctcgca gatggtgccg gccacgctca acaccgtcag cgtcgacctg gccgccggca
     1561 gcgagcacgg cttccgcgcg tccggcacga cggtcgtcga tccgggcttc ctcgccgtgt
     1621 acgaggaagg ccgcgacacg aagacgtccg aggacgagga cgaaggccgc aagctgccgc
     1681 ccatgaagcc cggcgagcgc gtgccgctcg agcgcgtgcg cgccgaccag catttcaccc
     1741 agccgccgcc gcgcttcacc gaagcggcgc tggtcaaggc actggaggag tacggcatcg
     1801 gccggccgtc gacctacgcc tcgatcatcc agaccctgct gttccgcaag tacgtcgaga
     1861 tggagagccg cagcttccgt ccgaccgacg tcggccgcgc ggtgtcgaag ttcctcagca
     1921 gccacttcac ccggtacgtc gactacgact tcaccgcgaa gatggaggac gagctcgatg
     1981 ccgtgtcgcg cggcgaggag gagtgggtcc cgttgatgga gaagttctgg ggcccgttca
     2041 aggaactggt cgccgacaag accgagagcg tggaccgcag cgaggccacc ggcgcgcgcg
     2101 agctcggcac cgatccaaag accggcaagc cggtgagcgt gcgcctcggc cggttcgggc
     2161 cgtatgccgc gatcggcagc gtcgaggacg aggagaagcc gcagttcgcc tcgctgcgcc
     2221 ccggccagtc gatgcacacc atctcgctgg aggaagcgct ggagctgttc aagctgccgc
     2281 gcaagctcgg ccagtccaac gacgaggaag tgagcgtcgg catcggccgc ttcgggccgt
     2341 tcgccaagcg cggcggcacc tatgcctcgc tgaaaaagga ggacgatccg tacacgatcg
     2401 acctcgcgcg cgcggtgttc ctgatcgagg agaaggagga gatcgcgcgc aaccgcatca
     2461 tcaagtcctt cgaaggcagc gacatccagg tgctcaacgg ccgcttcggt ccgtacatca
     2521 gcgacggcaa gctcaacggc cgcatcccga aggaccgcga accggcctcg ctgacgctgg
     2581 cggaagtgca gcagctgctg gaggaaaccg gcaagccgat gcgcggccgc ttcggcaaga
     2641 agacggtggc gaagaaggcg ccggccaagg ccgcgaagga accggccgcg aaaaaggcgc
     2701 ctgcgaagaa ggcgcccgca aggaaggccc ccgcgaagaa ggcggcgaag aaggcggcga
     2761 agaagaccgc gaagacggcg gccgggaaga cggtgaagaa gacggcgaag aaggctgccc
     2821 ccaggccggc gcgcggtggc acgcgggcgg gcgccgacga agcgccgttc tgatccgcgg
     2881 cgcgacggcg cggctgctgc agcgccaccg ctccgcgcct aagcttgcgc gcatgcctcc
     2941 gtccctgtcg cccgccgcag ccgccgaccg cctccgccac ggcgccgtca tcgcctaccc
     3001 caccgaggcc gtatggggcc tgggctgcga tcccttcgac gaagcggcgg tgctgcgcct
     3061 gctcgcgatc aagcagcgcc cggtcgacaa gggcctgatc ctgattgccg gcgcgctgga
     3121 gctgttcgac ggcctgctcg actgggaccg cctgcccacc gaccgccgcg aggccgtgta
     3181 cgcgagctgg cccggcccgc acacctggat cgtgccggcc ggcgggcgcg tcccgcactg
     3241 gatcaccggc gcgcacgacg gcgtcgcggt gcgggtcagt gcgcatcctg gcgtggccgc
     3301 gctgtgcgcg gcgttcggcg gtccgctggt gtcgaccagc gccaacctcg ccggccatcc
     3361 cccggccttc tcgcgcgcgg acctcgatcc agcggtcgtc gcgctctgcg acggtgtctg
     3421 ctcgggcgag accggcggcc tgtccgcgcc gaccgcgatc gtcgacgcgc gcagcggcgc
     3481 gcaacttcgc gcgggctgac ccgcgcggcg caagggctga atccgcgcaa acgatcgccg
     3541 gaccgccctt ccgcccgcca cgcgcgcggc ggcatcatgg cggcatgagc ccgggcgccg
     3601 tccttccgct gatgctgtgg ctggcgccgc ccaccccggc cgcgccaccc gctgacgcgg
     3661 tgaccatcta ccggtgcacc gatgccgacg gccacctgac cctgcgcgat tcgccttgcg
     3721 ccaggggcca ggcccagcag acccgcacca tgctgcggcc gaaggacgcg ccgctgccgc
     3781 cggcaccgcc agcgcgcgac gcgccgcgcg acgccgccga tcgcgagccg cgcgaacgca
     3841 tcgtctacgt gcagccgccg cgtccgatgt acgagtgcgt gacgcccgac ggcgagcgct
     3901 acaccagcga gacgcccgaa ggacatccgc gctgggtgcc gctgtggacg ct
//
LOCUS       DATIQC010000316         1874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_586519, whole genome shotgun sequence.
ACCESSION   DATIQC010000316 DATIQC010000000
VERSION     DATIQC010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_586519"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1874)
                     /locus_tag="VLM17_06745"
     CDS             complement(<1..>1874)
                     /locus_tag="VLM17_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR65281.1"
                     /translation="DLTVSDLAGALRAANAVRNVGERLGGDAAVPLTAGRFLASADDV
                     GSLVVGLAGGKPLRLSDVATIRAGGDLPVRYAWFGAPAGRAGPAAGVAPAVTIAIAKK
                     PGSNAADITNGIRARLHQLQGELIPAGVHAVVTRDYGRTATDKAVKLIEKLVFATASV
                     VLLVLFALGWREAIVVGSAVVLTLAMTLFASWSMGFTLNRVSLFALIFSIGILVDDAI
                     VVVENIHRHMALGGRTLREAIPPAVQEVGGPTILATFTVIAALMPMAFVSGLMGPYMR
                     PIPINASVGMLLSLAIALIVTPWLALKLLARHGAGDDAAAHAAEARGASRLHRLFAKV
                     MGPFLDPGEGGRRRLWLFGGMAGLVVLAASLAVFQLVVLKMLPFDNKSEFQVVVDLPE
                     GRTLEDTDALLGELAAAVDKVPEVVDYQGYAGTAAPINFNGLVRQYFLRSGSNVGDLQ
                     VNLVDKHQRKRQSHEIARALRPTLAAIAARHGASVKVVEVPPGPPVLAPLVAELYGPD
                     YATARRLAKALERRFLATRDIVDVDTSVESDAPREVVTVDRERAARLGVPQAAIADAL
                     AAAVGGLDATYVHDGASKYPRPVRLRLPAGEQASMQRLLALTVRGGAGQLVPLSELVS
                     "
BASE COUNT          271 a          690 c          674 g          239 t
ORIGIN      
        1 cgctgaccag ttccgacagc ggcacaagct gccccgcgcc gccgcgcacc gtgagcgcga
       61 gcaggcgctg catgctggcc tgctcgccgg ccggcaggcg caggcgcacc gggcgcgggt
      121 atttcgacgc gccgtcgtgc acgtaggtcg catccagccc ccccaccgcc gccgccagcg
      181 cgtcggcgat cgccgcttgc ggcacgccca gtcgggcggc gcgctcgcgg tccacggtga
      241 cgacttcgcg cggcgcgtcg ctttcgacgc tggtgtcgac gtcgacgatg tcccgcgtcg
      301 cgaggaagcg ccgctccagc gccttcgcca gtcggcgcgc ggtggcgtag tccgggccgt
      361 agagttcggc gacgagcggc gccagcaccg gcggccccgg cggcacctcg accaccttca
      421 ccgacgcgcc gtgcctggcg gcgatcgccg ccagggtggg ccgcagcgcg cgcgcgatct
      481 cgtggctctg gcgcttgcgc tggtgcttgt cgaccaggtt gacctgcagg tcgccgacgt
      541 tgctgccgct gcgcaggaag tactgccgga ccaggccgtt gaaattgatc ggcgcggcgg
      601 tgccggcgta accctggtag tcgacgacct cgggcacctt gtccaccgcg gcggcgagct
      661 cgccgagcag cgcgtcggtg tcctccagcg tgcgcccttc cggcaggtcg acgacgacct
      721 ggaactcgga cttgttgtcg aacggcagca tcttcagcac gaccagctgg aacaccgcca
      781 gcgatgccgc cagcaccacg aggccggcca tgccgccgaa cagccacagc cgccggcggc
      841 ctccctcgcc gggatctagg aacggcccca tcaccttcgc gaacagccgg tgcaggcggc
      901 tggcgccgcg cgcttccgcg gcgtgcgcgg ccgcatcgtc gccggcgccg tgccgggcca
      961 ggagcttcag cgccagccac ggggtgacga tgagcgcgat cgcgagcgag agcagcatgc
     1021 cgaccgaggc gttgatcggg atcggccgca tgtacggccc catcaggccg gatacgaagg
     1081 ccatcggcat cagcgcggcg atcacggtga aggtggcgag gatggtcggc ccgccgacct
     1141 cctgcaccgc cggcgggatc gcctcgcgca aggtgcggcc gccgagcgcc atgtgccggt
     1201 ggatgttctc gaccaccacg atggcgtcgt cgacgaggat gccgatcgag aagatcagcg
     1261 cgaacagcga cacccggttg agggtgaagc ccatcgacca cgacgcgaac agggtcatcg
     1321 ccagcgtcag caccaccgcg ctgccgacca cgatggcctc gcgccagccg agcgcgaaca
     1381 gcaccagcaa caccaccgag gcggtggcga acaccagctt ctcgatcagc ttgaccgcct
     1441 tgtcggtcgc ggtgcggccg tagtcgcggg tcaccaccgc atgcacgccc gcgggaatga
     1501 gttcgccctg caactggtgc aggcgcgcgc ggatgccgtt ggtgatgtcg gcggcgttgc
     1561 tgcccggctt cttggcgatc gcgatggtga ccgctggcgc gacgcccgcc gccgggccgg
     1621 cgcgaccggc cggcgccccg aaccacgcat agcgaacggg caggtccccg cccgcgcgga
     1681 tggtggcgac gtccgacagg cgcagcggct tgccgccggc caggccgacg acgaggctgc
     1741 ccacgtcatc ggcactggcg aggaagcggc cggcggtcag cggcaccgcg gcgtcgccac
     1801 cgagccgctc gcccacgttg cgcaccgcgt tcgcggcgcg cagcgcgccg gcgaggtcgg
     1861 agacggtcag gtcg
//
LOCUS       DATIQC010000317         2167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_409917, whole genome shotgun sequence.
ACCESSION   DATIQC010000317 DATIQC010000000
VERSION     DATIQC010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409917"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VLM17_06750"
     CDS             <1..507
                     /locus_tag="VLM17_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HSR65282.1"
                     /translation="LRVQTGGGVRAEADVEALLAAGADRVVAGSLAVREPERVAGWLQ
                     RFGAERIVVALDTRRDAEGCWRLPSHGWTRQAGGSLERLADFYLAAGVRHLLCTDISR
                     DGMLAGPNDVLYRMLCARLPGVEVQASGGVRDGGDLGLLRAAGCGGAVLGKALLEGML
                     PLEEALAC"
     gene            501..1277
                     /gene="hisF"
                     /locus_tag="VLM17_06755"
     CDS             501..1277
                     /gene="hisF"
                     /locus_tag="VLM17_06755"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HSR65283.1"
                     /translation="MLSRRVIPCLDVRDGRVVKGVRFRGHADMGDVVELARRYRDQGA
                     DELVFYDIAASPQGRTVDRAWVERVARVLDIPFCVAGGIQSVDDARAVLRAGADKVSV
                     NTPALVRPALLGELADAFGVQCVVVGIDSLREADGEWRVRSHTGDPARTRAPGRRTLD
                     WVREVQALGAGEVVLNCMASDGMRDGYDIAQLRAVRAACVVPLVASGGAGACAHFAEA
                     FREADVDGALAASVFHTGAIGIPALKHWLRAQGVEVRVAA"
     gene            1267..1869
                     /gene="hisIE"
                     /locus_tag="VLM17_06760"
     CDS             1267..1869
                     /gene="hisIE"
                     /locus_tag="VLM17_06760"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017158500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HSR65284.1"
                     /translation="MQPETIDALAWDKQGGLLPAVVQDAATLRVLMLGYMDRAALRAT
                     LDSGQVTFFSRSRGASWRKGETSGNTLACVSIGADCDGDSLLVLARPAGPTCHRGTTS
                     CFEVARGDALALLDDLVARRQRERPAGSYTTRLLDGGVRAIAQKVGEEGVETALAAVA
                     QDDAALAGEAADLLYHLLVLLRARGLALEDAKAALAARMR"
     gene            complement(1870..>2167)
                     /locus_tag="VLM17_06765"
     CDS             complement(1870..>2167)
                     /locus_tag="VLM17_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HSR65285.1"
                     /translation="FGHREGGDLTPLFSSFFDTEMGHKRDAASYRRIAGALGRAPGDI
                     LFLSDVVEELDAAREAGLRTVLVDRREDYPQPRAGEAAHGHPRVESFADIIPAG"
BASE COUNT          268 a          751 c          852 g          296 t
ORIGIN      
        1 ctgcgcgtgc agaccggcgg cggcgtgcgc gcggaagccg acgtcgaagc cctgctcgcc
       61 gcgggcgccg accgcgtggt ggccggctcg ctggcggtgc gcgagccgga acgcgtcgcc
      121 ggctggctgc agcgcttcgg cgccgagcgc atcgtcgtcg cgctggacac gcgccgcgac
      181 gcggaaggct gctggcggct gccgtcgcac ggctggacgc ggcaggcggg cgggtcgctg
      241 gagcgcctgg ccgatttcta cctcgccgcc ggcgtgcgcc atctgctgtg caccgacatc
      301 tcgcgcgacg gcatgctcgc cggtcccaac gacgtgctgt accggatgct gtgcgcacgc
      361 ctgcccggcg tcgaggtgca ggccagcggc ggcgtgcgcg atggcggcga cctcggcctt
      421 ctgcgcgccg ccggttgcgg gggcgcggtg ctgggcaagg cgctgctcga aggaatgctt
      481 ccgctcgagg aggcactcgc atgctgagcc ggcgcgtcat cccctgcctg gacgtgcgcg
      541 acgggcgcgt ggtcaagggc gtgcgcttcc ggggccacgc cgacatgggc gatgtcgtcg
      601 aactggcgcg acgctaccgc gaccagggtg cggacgaact cgtgttctac gacatcgccg
      661 ccagcccgca gggacgcacg gtcgaccgcg cctgggtcga gcgcgtggcc cgcgtgctcg
      721 acattccgtt ctgcgtcgcg ggcggcatcc aaagcgtgga cgatgcgcgc gcggtgctgc
      781 gcgcgggtgc ggacaaggtg tcggtgaaca cgccggcgct ggtgcggccg gcgctgctcg
      841 gcgaactggc cgatgccttc ggcgtgcagt gcgtggtcgt cggcatcgac agcctgcgcg
      901 aggccgacgg cgaatggcgc gtgcgcagcc acaccgggga tccggcgcgg acccgcgcgc
      961 ccggacgccg taccctcgac tgggtgcggg aagtgcaggc gctcggagcc ggcgaggtcg
     1021 tgctcaactg catggccagc gacggcatgc gcgacggtta cgacatcgcg caactgcgcg
     1081 cggtccgcgc ggcgtgcgtg gtgccgttgg tggcttcggg cggggccggc gcgtgcgcgc
     1141 atttcgccga ggcgttccgc gaggcggacg tcgatggcgc gctcgccgcc agcgtgttcc
     1201 acaccggcgc catcggcatc cccgcgctca agcactggtt gcgcgcccag ggcgtggagg
     1261 tgcgcgttgc agcctgagac gatcgacgcg ttggcctggg acaagcaggg cggcctgttg
     1321 ccggcggtgg tgcaggacgc ggccacgctg cgcgtgctga tgctgggcta catggaccgc
     1381 gctgcactgc gggcgacatt ggacagcggg caggtcacct tcttcagccg cagccgtggc
     1441 gcctcgtggc gcaagggcga gacctccggg aacacgctcg cgtgcgtgtc gatcggtgcc
     1501 gattgcgacg gcgacagcct gctggtgctc gcgcgtcccg ccggcccgac ctgccatcgc
     1561 ggcacgacga gctgcttcga ggtcgcgcgc ggcgacgcgc tcgcgctgct ggacgacctc
     1621 gtcgcgcgac gccagcgcga gcgcccggcc gggagctaca ccacgcgcct gctcgatggc
     1681 ggcgtgcgcg cgatcgccca gaaggtcgga gaggaaggcg tcgaaacggc gctcgccgcg
     1741 gtggcgcagg acgacgccgc gctggccggc gaagccgccg acctgctgta ccacctgctg
     1801 gtgctgctgc gcgcgcgggg cctggcgctc gaggacgcga aagcggcgct ggccgcgcgc
     1861 atgcgctgat cagccggcgg ggatgatgtc ggcgaaggat tcgacccgcg gatggccatg
     1921 ggcggcctcg ccggcgcgcg gctgcggata gtcctcgcgc cggtcgacca gcaccgtgcg
     1981 caggccagcc tcgcgcgcgg catccagttc ctcgaccacg tccgacagga acaggatgtc
     2041 gcccggcgcg cggccgagcg ccccggcgat gcggcggtag ctcgcggcgt cgcgcttgtg
     2101 gcccatctcg gtgtcgaaga acgacgagaa cagcggggtc aggtcgccgc cctcgcggtg
     2161 gccgaaa
//
LOCUS       DATIQC010000318         2039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_586641, whole genome shotgun sequence.
ACCESSION   DATIQC010000318 DATIQC010000000
VERSION     DATIQC010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_586641"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2039
                     /locus_tag="VLM17_06770"
     CDS             <1..>2039
                     /locus_tag="VLM17_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011051626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase domain-containing
                     protein"
                     /protein_id="HSR65286.1"
                     /translation="FLGYREYDVVRKGGSELLCAVEDSGMGLLRGREKGKARDLKTLA
                     AHYMPQSVSVDALILTKTNARATVHRPGYMDYIGVLSFDKDGTPVREERFLGLYTSSA
                     YNRRPWEIPLVRERHEHVMERSGLSPTGHSGKALRHILETLPRDELFQSNEDELFNTA
                     TGILGLQERVRSRLFLRRDRYGRFYSALVYIPRDRFNTEVRRRIEALLKDALDGDHID
                     TTVQVGESPLAQLHLLVRPKSGEAVEVDAGALQDQLASIVRNWQDDLREELSASEGEE
                     QGLLLAKRYGRTLPVGYIEQVTPAIAAGDVRNLAALSGSDDLRLSLYRAPRAGEGLRF
                     KLYRLGDDIPLSDALPMMENLGLRVLSEHPYRIDLGDRIAWIQDFEVQAARADLDVAN
                     VGASFADAFAHVWRGQAENDGFNRLVLAAGLTWRQVAMLRAYCKYLLQVGVPFSQAYV
                     EATLARYPLMARLLVELFEARFDPATGSESKAEIQLGREAFARQLEALAGGDAVTMAI
                     LEPVLQARAAARERQVEAARTALFGLMDRVASLDEDRILRSYIGVMDATLRTSYYLNV
                     RNRARADGGPRDYVSFKLDSSRVPDLPKPRPYREIWVCGPRVEGTPLRFGPVARGGLR
                     WSDRREDFRTEVLGLVKAQMVKNTVIVPVGSKGGFYAKQLPSPAMDRDAWMAEGI"
BASE COUNT          308 a          725 c          719 g          287 t
ORIGIN      
        1 cttcctcggt taccgcgaat acgacgtggt gcgcaagggc ggcagcgagc tgctgtgcgc
       61 ggtcgaggat tccggcatgg gcctgctgcg cggcagggag aagggcaagg cgcgcgacct
      121 gaagacgctc gcggcgcatt acatgccgca gtccgtctcg gtcgacgcgc tgatcctgac
      181 caagaccaac gcgcgcgcca ccgtgcaccg cccgggctac atggactaca tcggcgtgct
      241 cagcttcgac aaggacggca cgccggtgcg cgaggagcgc ttcctcggcc tgtacacctc
      301 gagcgcgtac aaccgccgcc cgtgggagat cccgctggtg cgcgagcgcc acgagcacgt
      361 catggagcgc tcgggcctgt cgccgaccgg ccacagcggc aaggcgctgc gccacatcct
      421 cgagacgctg ccgcgcgacg agctgttcca gtcgaacgag gacgagctgt tcaacaccgc
      481 gaccggcatc ctcggcctgc aggaacgggt gcgcagcagg ctgttcctgc gccgcgaccg
      541 ctacggccgc ttctattcgg cgctggtcta catcccgcgc gaccgcttca acaccgaggt
      601 gcgccgccgc atcgaggcgc tgctcaagga cgccctcgac ggcgaccaca tcgacaccac
      661 ggtgcaggtc ggcgagtcgc cgctggccca gctgcacctg ctcgttcggc cgaagtcggg
      721 cgaggcggtc gaggtcgacg ccggcgcgct gcaggaccag ctggcgtcga tcgtgcgcaa
      781 ctggcaggac gacctgcgcg aggagctctc cgccagcgag ggcgaggagc agggactgct
      841 gctggccaag cgctacgggc gcacgctgcc ggtcggctac atcgagcagg tcacgccggc
      901 gatcgccgcc ggggacgtgc gcaacctcgc cgcgttgtcc ggcagcgacg acctgcgcct
      961 gagcctgtac cgcgcgccgc gcgccggcga aggcctgcgc ttcaagctct accggctcgg
     1021 cgacgacatc ccgctgtcgg acgcgctgcc gatgatggaa aacctcggcc tgcgcgtgct
     1081 gtccgagcat ccgtaccgga tcgacctcgg cgaccgcatc gcctggatcc aggatttcga
     1141 ggtgcaggcc gcgcgcgccg acctggacgt ggcgaacgtg ggcgcgagct tcgcggacgc
     1201 cttcgcgcac gtctggcgcg ggcaggccga gaacgacggc ttcaaccgcc tcgtcctcgc
     1261 cgccggcctg acctggcggc aggtcgcgat gctgcgcgcc tactgcaagt acctgctgca
     1321 ggtcggcgtg ccgttctcgc aggcctacgt cgaagcgacg ctcgcgcgct acccgctgat
     1381 ggcgcggctg ctggtggagc tgttcgaggc gcgcttcgat ccggccaccg gcagcgagag
     1441 caaggccgaa atccagctcg gccgcgaagc cttcgccagg cagctggaag cgctggccgg
     1501 tggcgacgcg gtcacgatgg ccatcctcga gccggtcttg caggcgcgcg cggctgcgcg
     1561 cgagcgccag gtcgaggccg cgcgcaccgc gctgttcggc ctcatggacc gcgtcgccag
     1621 cctcgacgag gaccgcatcc tgcgcagcta catcggcgtg atggacgcca cgctgcgcac
     1681 gagctactac ctcaacgtgc gcaatcgcgc gcgcgccgac ggcggcccgc gcgactacgt
     1741 cagtttcaag ctcgattcgt cgcgcgtgcc cgacctgccg aagccgcgtc cttatcgcga
     1801 gatctgggtg tgcggcccgc gcgtggaagg cacccctctg cgcttcggcc cggtggcccg
     1861 cggcggcctg cgctggtccg accgccgcga ggacttccgc accgaggtgc tgggcctggt
     1921 gaaggcgcag atggtgaaga acacggtcat cgtgccggtg ggcagcaagg gcggcttcta
     1981 cgccaagcag ctgccgagcc cggcgatgga ccgcgacgcg tggatggccg aaggcatcg
//
LOCUS       DATIQC010000319         3442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_515778, whole genome shotgun sequence.
ACCESSION   DATIQC010000319 DATIQC010000000
VERSION     DATIQC010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3442
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515778"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VLM17_06775"
     CDS             <1..551
                     /locus_tag="VLM17_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HSR65287.1"
                     /translation="HYRAVADDGALPVVLYNVPGRTGCDLLPETVAQLASHPRIVGIK
                     EARSEPERMAALLPLRAEGFTVLSGDDPTACRAMLAGADGLVSVASNVLPAAFRQLCD
                     LARAGRAAEAQALDARLHDAVGFMGIEPNPIPVKAILARIGIGAGLRLPLTPLSPEHA
                     GHADRVAASVSTLEHTCAAHAA"
     gene            565..1059
                     /locus_tag="VLM17_06780"
     CDS             565..1059
                     /locus_tag="VLM17_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005994930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65288.1"
                     /translation="MRLSRPFAVAALALVAASGCHWFHKPDKAYRESAESRPLEVPPD
                     LDRPNTEGAMAPAEAPRSVMRSDLTAPVAANPSGFTVQGERDAVFAKVGDALAGMQGV
                     TIASKAQLLGTYDVSYEGANFLVRVTAVTAGVYVSAIDPRGTPATEAAPLKLIAALKG
                     ALGG"
     gene            complement(1166..1489)
                     /gene="fdxA"
                     /locus_tag="VLM17_06785"
     CDS             complement(1166..1489)
                     /gene="fdxA"
                     /locus_tag="VLM17_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005994928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin FdxA"
                     /protein_id="HSR65289.1"
                     /translation="MPFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCT
                     LCEPECPINAIYPEDDVPAGQEHFVQLNAELAKAWPVITTRKDALPDAKEWEGKPDKL
                     PLLER"
     gene            complement(1603..1678)
                     /locus_tag="VLM17_06790"
     tRNA            complement(1603..1678)
                     /locus_tag="VLM17_06790"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1642..1644),aa:Glu,seq:ctc)
     gene            1840..3180
                     /gene="pcnB"
                     /locus_tag="VLM17_06795"
     CDS             1840..3180
                     /gene="pcnB"
                     /locus_tag="VLM17_06795"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017116093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:1990817 - poly(A) RNA polymerase activity
                     [Evidence IEA];
                     GO_process: GO:0006378 - mRNA polyadenylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HSR65290.1"
                     /translation="MTGTPMAPRIVPRDQHPLSRRDVSPNALRVLYRLRESGFAAFLV
                     GGAVRDLLIGGHPKDFDVATDATPEQVRQLFRNCRLIGRRFRLAHVVFGREIIEVATF
                     RSNADDGSGDREQHEGGRLLRDNVYGSIEEDAVRRDFTANALYYAIEDFSVRDYTGGF
                     EDVQNRILRLIGDPEQRYREDPVRMLRAVRLSAKLGFGIEKDTATPIPQLAGLLREAA
                     PARLFEECLKLFLSGHAVQSFLGLEAHGLLPVLLPESAAALKSNRSGALRRMLLEGLR
                     GTDERVANDEPVSPAFLFALLLWPAYCRALMSLQAQGMHAAEAQRRAADRVTVHQLET
                     IALPRRFSVPMQEIWLLQPRFALRQRKRVHRFLAHPRFRAAWDFLQLRQHASTEHADD
                     IAWWREMMAGMADQLPAGDLEASDEDALDLEVPAEAGAPRRRRRRRRRTQRPAE"
     gene            3177..>3442
                     /gene="folK"
                     /locus_tag="VLM17_06800"
     CDS             3177..>3442
                     /gene="folK"
                     /locus_tag="VLM17_06800"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HSR65291.1"
                     /translation="MSAPVRACVGLGGNVGDAAATLRAAFADLDRLPRTRLLRASRLY
                     RTPAWGVQAQPDFVNAAALLETTLGAREMLDGLLAIERGFGRERR"
BASE COUNT          474 a         1298 c         1189 g          481 t
ORIGIN      
        1 cgcactaccg cgccgtcgcc gacgacggcg cgctgccggt cgtgctctac aacgtgcccg
       61 ggcgcaccgg ctgcgacctg ctgccggaga cggtggccca gctggcgtcg cacccgcgca
      121 tcgtcggcat caaggaagcg cgcagcgaac ccgaacgcat ggccgcgctg ctgcccctgc
      181 gcgcggaagg cttcaccgtc ctcagcggcg acgatcccac ggcctgccgc gcgatgctcg
      241 ccggggccga tggcctggtc tccgtcgcct ccaacgtgct gccggcggcg ttccgccagc
      301 tgtgcgacct ggcccgcgcc ggacgcgcgg cggaggcgca ggccctggac gcgcgcctgc
      361 atgatgccgt cgggttcatg ggcatcgagc ccaacccgat cccggtgaag gcgatcctgg
      421 cccggatcgg catcggcgcc ggcctgcggc tgccgctgac gccgctttcg cccgaacacg
      481 ccgggcacgc cgaccgcgtg gccgcgtccg tttccaccct cgaacacacc tgcgccgccc
      541 acgcggcctg acccggagaa cccgatgcgc ctgtcccgcc cgttcgccgt cgccgccctg
      601 gccctcgtgg ccgcttccgg ctgccactgg ttccacaaac ccgacaaggc ctaccgcgaa
      661 agcgccgaga gccggccgct ggaagtgccg cccgacctcg accggcccaa caccgaaggc
      721 gcgatggccc cggcggaagc cccccggtcg gtgatgcgtt cggacctgac ggcgccggtc
      781 gcggccaacc cgagcgggtt cacggtgcag ggcgagcgcg acgcggtgtt cgccaaggtc
      841 ggcgatgcgc tggccggcat gcagggcgtg accatcgcca gcaaggcgca gctgctcggc
      901 acctatgacg tcagctacga gggcgccaat ttcctcgtgc gggtgactgc ggtgacggcc
      961 ggcgtctacg tctcggcgat cgacccgcgc ggcacaccgg cgaccgaggc ggcgccgctg
     1021 aagctgatcg cggcgctgaa gggcgcgctc ggcggctgag ccggcaggcc catcgaggca
     1081 tgcgaaaacg ggcgcctttc ggcgcccgtt ttctttcacc cgcggcggtg caggccgctg
     1141 gcgcgccgcg ccacccgcgc cgggctcaac gctccagcag cggcagcttg tccggcttgc
     1201 cttcccactc cttcgcgtcg ggcagggcgt ccttgcgggt ggtgatcacc ggccacgcct
     1261 tcgccagttc ggcgttgagc tggacgaagt gctcctgtcc ggcaggcacg tcatcctcgg
     1321 ggtagatcgc gttgatcggg cactccggct cgcacagggt gcagtcgatg cactcgtccg
     1381 ggtcgatcac gaggaaattc gggccttcgt ggaaacagtc gaccgggcac acctcgacgc
     1441 agtcggtgta cttgcacttg atgcagttct cggtgacgac gaagggcatg gcggacgcgc
     1501 gaacgggggg agagcgcgca gtgtacgccg cgctgcgccg gcgatccaaa gcggtgcgcg
     1561 caaaaggaaa agcccgcgca tcgctgcgcg ggctttcgaa gatggcgctc cctacgggat
     1621 tcgaacccgt gttttagcct tgagagggcc acgtcctagg cctctagacg aagggagcgg
     1681 gatggcttgc gccgccggct ggacgaccgg tccccgtggc cggtcaggcg cacaaggctt
     1741 gctagtatat ggggcgcgct tgcctccggg caacgcactt ctctcgatcc tgctgccgcg
     1801 gccgtgccgc cctcgatgtc cgaacacacc gacaccccca tgaccggcac gccaatggcg
     1861 ccgcgcatcg tcccgcgcga ccagcacccg ctctcgcgcc gcgacgtcag ccccaacgcg
     1921 ctgcgcgtgc tctatcgcct gcgcgagtcc ggcttcgccg cgttcctggt cggcggggcg
     1981 gtgcgtgacc tgctgatcgg cggccatccc aaggacttcg acgtcgccac cgacgccacg
     2041 cccgagcagg tgcgccagct gttccgcaac tgcaggctga tcggccgccg cttccgcctc
     2101 gcgcacgtcg tgttcggccg cgagatcatc gaggtcgcga ccttccgctc caacgccgac
     2161 gacggcagcg gcgaccgcga gcagcacgag ggaggccgcc tgctgcgcga caacgtctac
     2221 ggcagcatcg aggaggacgc ggtccgccgc gacttcaccg ccaacgcgct gtattacgcg
     2281 atcgaggact tctcggtgcg cgactacacc ggcggcttcg aggacgtgca gaaccggatc
     2341 ctccggctga tcggcgaccc ggagcaacgc taccgcgagg acccggtgcg gatgctgcgc
     2401 gcggtgcggt tgtcggcgaa gctcggcttc ggcatcgaga aggacacggc gacgccgatc
     2461 ccgcagctcg cgggcctgct gcgcgaggcc gcgccggcgc gcctgttcga ggaatgcctg
     2521 aagctgttcc tgtccggcca cgccgtgcag agcttcctcg gcctcgaagc gcacggcctg
     2581 ttgccggtgc tgttgccgga aagcgccgcc gcgctcaagt ccaaccgcag cggcgcgctg
     2641 cggcggatgc tgctcgaggg gctgcgcggc accgacgagc gcgtggccaa cgacgagccg
     2701 gtgtcgcccg cgttcctgtt cgccctgctg ctgtggccgg cctactgccg cgccctgatg
     2761 agcctgcagg cgcagggcat gcacgccgcg gaggcgcagc gccgggccgc cgaccgcgtc
     2821 accgtccacc agctggaaac catcgccctg ccgcgccgat tctcggtgcc gatgcaggag
     2881 atctggctgc tgcagccgcg cttcgccctg cgccagcgca agcgcgtgca ccgcttcctc
     2941 gcccatccgc gcttccgcgc cgcgtgggac ttcctccagc tgcgccagca cgcgtccacc
     3001 gagcacgcgg acgacatcgc ctggtggcgc gaaatgatgg ccgggatggc cgaccagctc
     3061 ccggcgggcg acctggaggc gtccgacgag gacgcgctgg acctcgaggt gccggccgaa
     3121 gccggggcgc cacgccgtcg ccgccggcgc cgccgccgca cccagcgccc cgcggaatga
     3181 gcgcgccggt gcgcgcctgc gtcggcctcg gcggcaacgt cggcgacgcg gccgccaccc
     3241 tgcgcgccgc cttcgccgac ctcgaccgcc tgccgcgcac gcgcctgctg cgcgcttcac
     3301 gcctgtaccg caccccggcg tggggcgtgc aggcgcagcc ggacttcgtc aacgccgccg
     3361 cgctgctgga gaccaccctc ggcgcgcgcg aaatgctcga cggcctgctg gcgatcgaac
     3421 gcggcttcgg ccgcgaacgc cg
//
LOCUS       DATIQC010000320         1703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_445291, whole genome shotgun sequence.
ACCESSION   DATIQC010000320 DATIQC010000000
VERSION     DATIQC010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445291"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1476)
                     /locus_tag="VLM17_06805"
     CDS             complement(<1..1476)
                     /locus_tag="VLM17_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan halogenase family protein"
                     /protein_id="HSR65292.1"
                     /translation="MDDTRIRKVLIVGGGTAGWMAAAYLSQALGGLVPIELVESEEIG
                     TIGVGESTIPPILNFNRALGIDEDEFVRATQATFKLGIEFRHWGAIGERYLHGFGTLG
                     RNTGLVDFHQYWLRMFQAGKVERLDDYSLNLLAIERNKFMRGTSQIPNSPLQDLGHAF
                     QFDASLYARFLRGYSERHGVRRIEGRIVSVQQDPESGFVTSVTLAGDRVVEADLFVDC
                     SGFRGLLIEQSLHAGFEDWRHWLPCDRALAVPSAAAGRLTPYTRATAHAAGWQWRIPL
                     QHRVGNGHVYCSDFISDDEATAVLLANLDGEPLADPRPLRFAAGRRRRLWEKNVVAIG
                     LSGGFIEPLESTSIHLIQKGIARLAMLFPDRNFDAANAEEFNRQSIAEYEHVRDFVIL
                     HYHATRRDDAPFWDRVRTMPVPDSLRQRIELFRANGRVHREPSELFAETSWIEVMLGQ
                     GILPRGHHPLADGKPEARVLDMLADVKRVMHGVVELMPSHED"
     gene            complement(1499..>1703)
                     /locus_tag="VLM17_06810"
     CDS             complement(1499..>1703)
                     /locus_tag="VLM17_06810"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510278.1"
                     /note="catalyzes the formation of pyruvate and glyoxylate
                     from 4-hydroxy-2-oxoglutarate; or pyruvate and
                     D-glyceraldehyde 3-phosphate from
                     2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="keto-deoxy-phosphogluconate aldolase"
                     /protein_id="HSR65293.1"
                     /translation="LRALAGPFPQARFCPTGGIDASRAAAYLRLSNVATVGGSWMVPA
                     DALAARDWDRIGALARECATLRP"
BASE COUNT          253 a          568 c          632 g          250 t
ORIGIN      
        1 gtcctcgtgg ctcggcatca gttcgacgac gccgtgcatg acccgcttca cgtcggccag
       61 catgtccagc acgcgcgcct cgggcttgcc gtcggcgagc ggatggtggc cgcgcggcag
      121 gatgccctgg ccgagcatga cctcgatcca gctcgtctcg gcgaacagtt cgctcggctc
      181 gcggtgcacc cgtccgttgg cgcggaacag ctcgatgcgc tgccgcagcg aatcggggac
      241 cggcatcgtg cgcacccggt cccagaacgg cgcgtcgtcg cgccgggtgg cgtggtagtg
      301 caggatcacg aagtcgcgca cgtgttcgta ttcggcgatc gactggcggt tgaactcctc
      361 ggcgttcgcc gcgtcgaagt tccggtccgg gaacagcatc gccagccgcg cgatgccctt
      421 ctggatcagg tggatcgagg tcgattccag cggctcgatg aagccgccgg acaggccgat
      481 ggcgacgacg ttcttctccc acaggcgccg gcgccggccc gcggcgaagc gcagcgggcg
      541 cggatcggcc agcggttccc cgtcgaggtt cgccagcagc acggcggtcg cctcgtcgtc
      601 gctgatgaaa tcgctgcagt agacgtggcc gttgccgacg cggtgctgca gcggaatgcg
      661 ccactgccag ccggcggcgt gcgcggtggc gcgggtgtag ggggtgagcc ggccggcggc
      721 cgcggacggc accgcgagcg cgcggtcgca gggcagccag tggcgccagt cctcgaagcc
      781 ggcgtgcagg ctctgctcga tcagcaggcc gcggaagccg gagcagtcga cgaacaggtc
      841 cgcctcgacg acccgatcgc cggcgagcgt caccgaggtg acgaagccgc tttccgggtc
      901 ctgctgcacg gagacgatgc ggccttcgat gcggcgcacg ccgtggcgct ccgagtatcc
      961 acgcaggaag cgcgcgtaca ggctggcgtc gaactggaag gcgtggccga ggtcctgcag
     1021 cggcgaattc gggatctggc tggtgccgcg catgaacttg ttgcgctcga tggcgagcag
     1081 gttcagcgag tagtcgtcga ggcgctcgac cttgccggcc tggaacatgc gcagccagta
     1141 ctggtggaag tccacgaggc cggtgttgcg tcccagggtg ccgaagccgt gcaggtagcg
     1201 ctcgccgatc gcgccccagt ggcggaactc gatgccgagc ttgaacgtgg cctgggtcgc
     1261 gcggacgaac tcgtcctcgt cgatgcccag cgcgcggttg aaattgagga tcggcgggat
     1321 ggtggactcg cccacgccga tcgtgccgat ctcctccgac tcgaccagtt cgatcggcac
     1381 gagcccgccc agggcctgcg acaggtaggc ggcggccatc cagccggcgg tgccgccgcc
     1441 gacgatgagc accttgcgga tccgcgtgtc gtccatcgaa accatgtccg gaagaatctc
     1501 agggacgcag tgtggcgcat tcgcgcgcca gcgcaccgat gcggtcccag tcgcgcgcgg
     1561 ccagcgcgtc ggccggcacc atccacgacc cgccgacggt ggcgacgttg gacaggcgca
     1621 ggtaggcggc ggcccgggac gcgtcgatgc cgccggtggg gcagaagcgc gcctgcggga
     1681 acgggccggc gagcgcccgc agc
//
LOCUS       DATIQC010000321         2065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_445295, whole genome shotgun sequence.
ACCESSION   DATIQC010000321 DATIQC010000000
VERSION     DATIQC010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445295"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..397
                     /locus_tag="VLM17_06815"
     CDS             44..397
                     /locus_tag="VLM17_06815"
                     /inference="COORDINATES: protein motif:HMM:TIGR04509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NHLP-related RiPP peptide"
                     /protein_id="HSR65294.1"
                     /translation="MATKTPGARSAPLDPKVADRLLDLLSTDNAFRRLFKKDPQAALA
                     QVGHPEAKAAVAALKKGGTAPEGSASCCQVQRIAPKATIIRARAELKTMLTQALAYTV
                     PNLDAAATASRRTRK"
     gene            complement(340..>2065)
                     /locus_tag="VLM17_06820"
     CDS             complement(340..>2065)
                     /locus_tag="VLM17_06820"
                     /inference="COORDINATES: protein motif:HMM:TIGR04510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="putative peptide modification system cyclase"
                     /protein_id="HSR65295.1"
                     /translation="LALMQRQPGTVLDRTIASEIALRDGARAVILPTVAEVGGKVRVS
                     AEVIDPHTQATVYAEFADGTGAASTLRSIDHVTAALRGRLGEAVESIEKTSAPLPQVS
                     TANLDALRAYALAQHAYARVRFAEALRFYERATRIDPQFALAWIGQSKIQVATQHAPD
                     GVFAIRKAQALRARLPQREALYLDAWASVFDAPADTSTKWQDLAGLYPDFWPAVGNSA
                     TWLFSQNRLHEALPYARRWTAQQYELASHGYDMLGRLYLGMERYPEAARAFDQALALG
                     FVDCMRRRASVESAQRRFAEASRWLRRAGTREPYPYLDRISAAVDQGRWAEAVAASDA
                     AFAMVEHQAGLDRRIFPLPAATAHWMAGDAGRARSLLGQAQRLALASLQNSPDADAED
                     DAALAASSALLALRFGDVATASPVPAALKSQPKVLAIPKVAELVALVEAEAARRAHAP
                     ARAIALLEPLVTGHEQYQTHVALLEAYADAGRLSSAIEQARWLQHHRGLAYIELGGAQ
                     VLQALNVYDSNLAILREAELQQASNHPADAARALRRFDAIWPVEVLPAYLRVRRDAVA
                     AASRLGTV"
BASE COUNT          297 a          719 c          771 g          278 t
ORIGIN      
        1 gattgcggtg atcggccgcg ggggcggcct tggggatgcg gacatggcca cgaagacacc
       61 cggggcgcgc tcggcgccgc tggatccgaa ggttgcggac cggctgctgg acctgctgag
      121 caccgacaac gcgttccgcc gcctgttcaa gaaggacccg caggcggcgc tcgcgcaggt
      181 cgggcatccg gaggcgaaag ccgccgtcgc cgcgctgaag aagggcggga cggcgccgga
      241 gggcagcgcg tcgtgctgtc aggtgcagcg catcgcgccg aaggccacga tcatccgcgc
      301 gcgcgcggag ctgaagacga tgctgacgca ggcgctcgcc tacaccgtgc ccaacctcga
      361 cgccgcggcc accgcgtcgc ggcgcacgcg caagtaggcg ggcaggacct cgaccggcca
      421 gatggcgtcg aagcggcgca gcgcgcgggc ggcatcggcc gggtggttcg atgcctgctg
      481 cagttccgct tcgcgcagga tcgccaggtt gctgtcgtag acgttcaggg cctgcaggac
      541 ctgggcaccg cccagctcga tgtaggccag cccgcgatgg tgctgcagcc agcgcgcctg
      601 ctcgatcgcg gacgacagcc gtccggcgtc ggcataggct tcgagcagcg ccacgtgcgt
      661 ctggtactgc tcgtgcccgg tgaccagtgg ctcgagcaag gcgatcgcgc gcgcaggcgc
      721 atgcgcgcgg cgtgccgcct ccgcctcgac gagcgcgacc agctcggcga ccttggggat
      781 ggccagcacc ttcggctgcg acttcagcgc cgcgggcacc ggcgacgcgg tcgcgacgtc
      841 tccgaagcgc agcgccagca acgccgacga cgcggccagc gccgcgtcgt cctccgcgtc
      901 ggcgtccgga ctgttctgca gcgaggcgag ggctagtcgt tgcgcctgcc cgaggagcga
      961 acgcgcccgg cccgcgtcgc ccgccatcca gtgcgcggtg gcggctggga gcgggaagat
     1021 ccgccggtcc agcccagcct ggtgttccac catcgcgaag gcggcgtcgg aggccgccac
     1081 cgcctcggcc cagcggccct ggtcgaccgc ggcgctgatc cggtccaggt agggatacgg
     1141 ttcccgggtt cccgccctgc gcaaccagcg cgacgcttcc gcgaaacgac gctgggcgga
     1201 ctccacggag gcgcgtcggc gcatgcaatc gacgaacccc aacgcgagcg cctggtcgaa
     1261 ggcgcgcgcg gcctccggat agcgctccat cccgaggtaa agccggccga gcatgtcgta
     1321 tccgtgcgag gccagttcgt actgctgcgc cgtccagcgc ctcgcgtaag gcagggcctc
     1381 gtgcaggcgg ttctggctga agagccaggt cgcggaattg ccgacggcgg gccagaagtc
     1441 gggatacagg ccggcgagat cctgccactt ggtgctggtg tccgccggcg catcgaagac
     1501 cgaggcccag gcgtcgaggt agagcgcttc gcgctgcggc aacctcgccc gcagcgcctg
     1561 ggcctttcgg atcgcgaaga cgccgtccgg tgcgtgctgg gttgcgacct ggatcttcga
     1621 ctgcccgatc caggcgagcg cgaactgcgg atcgatccgg gtcgcgcgct cgtagaagcg
     1681 cagcgcctcc gcgaaacgca cgcgcgcata ggcatgctgc gccagcgcat atgcgcgcag
     1741 cgcatcgagg ttcgcggtcg acacctgcgg cagcggcgcg gaggtcttct cgatcgactc
     1801 caccgcctcg ccgagcctgc cgcgcaatgc ggcggtgacg tggtcgatgg agcgcagcgt
     1861 ggaggcggcg ccggtgccgt cggcgaattc ggcgtagacc gtggcctggg tgtgcgggtc
     1921 gatgacctcg gcgctgaccc ggaccttgcc gccgacctcg gccacggtcg gcaggatcac
     1981 cgcgcgcgcg ccgtcgcgca gcgcgatctc ggaggcgatc gtgcggtcga gcacggtgcc
     2041 gggctggcgc tgcatcagcg cgagg
//
LOCUS       DATIQC010000322         1641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_622169, whole genome shotgun sequence.
ACCESSION   DATIQC010000322 DATIQC010000000
VERSION     DATIQC010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622169"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VLM17_06825"
     CDS             complement(<1..353)
                     /locus_tag="VLM17_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007805682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HSR65296.1"
                     /translation="MATRTPGHLVESPDYALAFRMLEPAPEQPRRLLVLLHGVGGQEG
                     QLASLGAQVDADTLVVLPRAPRSVGEGMFGWFRVAFTAAGPRIVPEEAEASRQALVDF
                     VGQLQAHHAVPAARTV"
     gene            482..841
                     /locus_tag="VLM17_06830"
     CDS             482..841
                     /locus_tag="VLM17_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HSR65297.1"
                     /translation="MSYIDGFVMAVPTANKDRFVAHARGTDSVFLEFGATSVRECWGD
                     DVPDGKLTDFRRAVQAQPEETVVFSWIEWPDKATRDAGMKKMMEDPRMDPQQNPFPFD
                     GKRMIYGGFAPLVELRR"
     gene            913..>1641
                     /locus_tag="VLM17_06835"
     CDS             913..>1641
                     /locus_tag="VLM17_06835"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HSR65298.1"
                     /translation="MRLRVVSWNIENLAPWLGDGGPDLAAQHARLGAPDVLCLQEIRI
                     RPQDTELVARMRQALPGYACQAALNRDPANGGFRGGRAYGVATYVREDLAPLALAFDW
                     DREGRACISHLPAAGIAIGNVYAVNGTARPHFDHDRGAVHGDRHAFKQAFIARLGGEL
                     AALQLHGLRLLLAGDWNVSRTRVDTTPRLRTEEPHATARRRFNEEFVGGLDLVDVFRA
                     RHPDTRAYTWFNRRARDGRLDAARV"
BASE COUNT          230 a          621 c          567 g          223 t
ORIGIN      
        1 accgtgcgcg cggccggcac cgcgtggtgc gcctgcagct ggccgacgaa gtcgaccagc
       61 gcctgccggc tcgcttcggc ctcttccggg acgatgcgcg ggccggccgc ggtgaaggcg
      121 acacggaacc agccgaacat gccctcgccg accgagcgcg gtgcgcgcgg cagcaccacc
      181 agcgtgtcgg catcgacctg cgcgcccagc gacgcgagct ggccttcctg cccgccgacg
      241 ccgtgcagca ggaccagcag ccgtcgcggc tgctcgggcg ccggctcgag catgcggaac
      301 gccagtgcgt agtcgggcga ttcgaccagg tgtccgggcg tgcgcgtggc catcgccgca
      361 gtgtgccgca ccggcgtgcc gggccggtga gggccgcgga tggcctgtcg atcgcatccg
      421 ccctcgttcg tcgtcattgg gaggacgcgc ggcgtgtcct gcttccgcaa ccggaggaac
      481 catgtcctac atcgatggct tcgtgatggc cgtgccgacg gccaacaagg accgtttcgt
      541 cgcccacgca cggggcaccg actcggtgtt cctggaattc ggcgccacca gcgtgcgcga
      601 gtgctggggc gacgacgtgc ccgacggcaa gctcaccgac ttccgccgcg cggtgcaggc
      661 gcagccggag gaaacggtgg tgttctcctg gatcgaatgg ccggacaagg ccacccgcga
      721 cgccggcatg aagaagatga tggaggatcc gcgcatggat ccgcagcaga accccttccc
      781 cttcgacggc aagcggatga tctacggcgg cttcgcgccg ctggtggagc tgcgccgcta
      841 gcccggcgcg aagcgcgccg ccgcaacctt cccttgaccg accgtgcgcc ggttgcatgc
      901 catcgtcatc gcatgcgcct gcgcgtcgtg tcgtggaaca tcgagaacct cgcaccgtgg
      961 ctcggcgacg gcggaccgga cctggccgcg cagcatgcgc ggctgggcgc gccggacgtg
     1021 ctgtgcctgc aggaaatccg catccgcccg caggacaccg agctcgtcgc gcgcatgcgc
     1081 caggcgctgc ccggatacgc ctgccaggcc gcgctgaacc gcgatcccgc caacggcggc
     1141 ttccgcggcg gccgcgccta cggcgtcgcc acctacgtgc gcgaggacct cgccccgctc
     1201 gcgctggcct tcgactggga ccgcgagggc cgcgcgtgca tcagccacct gccggcggcc
     1261 ggcatcgcga tcggcaacgt ctacgccgtc aacggcaccg cgcgcccgca tttcgaccat
     1321 gaccgtggcg ccgttcacgg cgaccgccac gcgttcaagc aggccttcat cgcccgcctc
     1381 ggcggcgaac tcgcggcgct gcagctccat ggcctgcgcc tgctgctggc cggcgactgg
     1441 aacgtttcgc gcacccgcgt ggacaccacg ccgcggctgc gcaccgagga accgcacgcg
     1501 accgcgcgcc ggcgcttcaa cgaggaattc gtcggcggcc tcgacctcgt cgacgtgttc
     1561 cgcgcgcgcc atcccgacac ccgcgcctac acctggttca accgccgcgc gcgtgacggc
     1621 cggctggacg cggcgcgcgt c
//
LOCUS       DATIQC010000323         1769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_339316, whole genome shotgun sequence.
ACCESSION   DATIQC010000323 DATIQC010000000
VERSION     DATIQC010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339316"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1323)
                     /gene="ftsW"
                     /locus_tag="VLM17_06840"
     CDS             complement(<1..1323)
                     /gene="ftsW"
                     /locus_tag="VLM17_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HSR65299.1"
                     /translation="MDAPASTRQATRLDAIPGRFDPWLLGVSVALAALGVVMVASSSI
                     ALNANPFYFLTRHVLFLAGGLGLAAWAMRTELKAIEKHNHLLLLACFALLLLVFVPGL
                     GASINGARRWVNLGVSRFQTVEAVKVIYIVWLSSYLVRFRDEVNATWPAILKPLGVAV
                     ALVAMLLLQPDFGSSTLLLGITAGMLVLGGGNLPRMAMPVLALLPALVALVVFEPYRM
                     RRVTSFMDPWADQLGSGYQLSNALMAVGRGEWFGVGLGASVQKLNYLPEAHTDFIFSV
                     IAEELGFAGVCLVIGLYALLVGRAMWVGYRCVEMRRHFAGYCAFGIALWMSLQSLVSI
                     GVNLGVLPTKGLTLPLISSGGSSVLMTCAALGLLLRISYELDRAERQVARLRGEAKQP
                     SAGYIPDTAQPLPGATPVAGKPATPVRGTSRLRPRVEPTLGAAPSPGQR"
     gene            complement(1323..>1769)
                     /gene="mraY"
                     /locus_tag="VLM17_06845"
     CDS             complement(1323..>1769)
                     /gene="mraY"
                     /locus_tag="VLM17_06845"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008045924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HSR65300.1"
                     /translation="GIFAYASGNAVFSSYLQIPQVPGAGELIIICAAIAGAGLGFLWF
                     TTYPAMVFMGDIGALAVGAVLGTIAVIVRQELVLVIMGGIFVVETLSVMIQVASFKLT
                     GKRVFRMAPIHHHFELKGWPEPRVIVRFWIISVVLVLIGLATLKVR"
BASE COUNT          327 a          621 c          613 g          208 t
ORIGIN      
        1 cctctggccc ggggacggcg cggcgccgag cgtgggttcg acgcgcggac gcaggcggct
       61 ggtgccacgc accggcgtcg ccggcttgcc cgccaccggc gtcgcacccg gcagcggctg
      121 cgccgtgtcc gggatgtagc cggccgaggg ctgcttcgct tcgccgcgca gtcgcgcgac
      181 ctggcgctcg gcgcggtcga gctcatagga aatgcgcagc agcaggccga gcgcggcgca
      241 ggtcatcagc accgaggaac cgcccgagga gatcagcggc agcgtcaggc ccttggtcgg
      301 cagcacgccg aggttgaccc cgatcgacac caggctctgc aggctcatcc acaacgcgat
      361 gccgaacgcg cagtagccgg cgaagtggcg gcgcatctcg acgcagcgat agcccaccca
      421 catcgcccgc ccgaccagca gcgcgtacag gccgatcacc aggcacacgc cggcgaagcc
      481 gagttcctcg gcgatcaccg agaagatgaa gtcggtgtgc gcctcgggca ggtagttgag
      541 cttctgcacc gacgcaccga ggccgacgcc gaaccactcg ccgcgaccga ccgccatcag
      601 cgcattggac agctggtagc ccgaaccgag ctggtcggcc cacgggtcca tgaacgaggt
      661 cacccggcgc atgcggtagg gctcgaacac caccagcgcc accagcgccg gcagcagggc
      721 gagcaccggc atcgccatgc gcggcaggtt gccgccgccg agcaccagca tgccggcggt
      781 gatgccgagc agcagggtcg aggagccgaa gtcgggctgc agcagcagca tcgcgaccag
      841 cgcgacggcc actccgagcg gcttgaggat cgccggccag gtcgcgttga cctcgtcgcg
      901 gaagcgcacg aggtagctcg acagccacac gatgtagatc accttgaccg cttccacggt
      961 ctggaagcgc gacacgccga ggttgaccca ccgccgtgcg ccgttgatgc tcgcccccag
     1021 cccgggcacg aacaccagca gcagcagcgc gaagcaggcg agcagcagca ggtggttgtg
     1081 cttctcgatc gccttcagct cggtgcgcat cgcccacgcc gccaggccga gcccgccggc
     1141 gaggaacagc acgtggcgtg tgaggaagta gaacgggttg gcgttcagcg cgatcgagct
     1201 ggacgcgacc atcaccaccc cgagcgcggc cagcgcgacc gacacgccca gcagccacgg
     1261 gtcgaagcgg ccggggatgg cgtcgaggcg ggtggcctgg cgggtgctgg cgggggcgtc
     1321 catcagcgca ccttcaaggt cgcgaggccg atcagcacga gcacgacgga gatgatccag
     1381 aagcgcacga tcacgcgcgg ctccggccag cccttgagct cgaaatggtg gtggatcggc
     1441 gccatccgga acacgcgctt gccggtgagc ttgaacgacg ccacctggat catcaccgac
     1501 agtgtctcga ccacgaagat gccgcccatg atcaccagca ccagttcctg gcgcacgatc
     1561 acggcgatgg tgccgagcac cgcgcccacg gccagcgcgc cgatgtcgcc catgaacacc
     1621 atcgccggat aggtggtgaa ccacaggaag cccaggccag cgccggcgat cgccgcgcag
     1681 atgatgatga gctcgcccgc gcccgggacc tgcgggatct gcaggtagct ggagaacacc
     1741 gcgttgcccg aggcgtaggc gaagatgcc
//
LOCUS       DATIQC010000324         2873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_445409, whole genome shotgun sequence.
ACCESSION   DATIQC010000324 DATIQC010000000
VERSION     DATIQC010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445409"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..943
                     /gene="rpoD"
                     /locus_tag="VLM17_06850"
     CDS             <1..943
                     /gene="rpoD"
                     /locus_tag="VLM17_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HSR65301.1"
                     /translation="FITTFPKNETSNRWLQKHMKAGKKYSAVLAKFKDEIEKRQQRLL
                     EIEQLRHLSIGDIKDINREVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD
                     LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
                     KLNRISRQMLQQFGREPTPEELSKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHL
                     GDFIEDTNVESPIDATTNTNLTETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVG
                     KQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDID"
     gene            1068..1445
                     /locus_tag="VLM17_06855"
     CDS             1068..1445
                     /locus_tag="VLM17_06855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65302.1"
                     /translation="MTATAITGEVRRFLLAVIPSVPHLEALLLLRAQPRAWGVPELAR
                     RLYVDEAPVQALLDDLAQAGLVASGDGGVRYAPAAPDVMATVDEVALAYGRHVVAVTE
                     LIHSTSDRKAQRFADAFRLRKEP"
     gene            1447..1704
                     /locus_tag="VLM17_06860"
     CDS             1447..1704
                     /locus_tag="VLM17_06860"
                     /inference="COORDINATES: protein motif:HMM:NF039620.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5985 family protein"
                     /protein_id="HSR65303.1"
                     /translation="MEFVIYALCALTALGCALLLFQAALRTRSRMLFFSAFCFATLTI
                     TNLLVLVDHAVGPSIDLRWLRLVTAVVAIGLLLYGLIFEEK"
     gene            1707..1970
                     /locus_tag="VLM17_06865"
     CDS             1707..1970
                     /locus_tag="VLM17_06865"
                     /inference="COORDINATES: protein motif:HMM:NF039620.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5985 family protein"
                     /protein_id="HSR65304.1"
                     /translation="MNQFMLGAIAMGSAVAALLFFRYWRSSHDRLFLYFSLSFATEAF
                     DRLLMALGRLDDSSTVFYLIRLLSYALILWAVIEKNLSGRSRP"
     gene            1996..2071
                     /locus_tag="VLM17_06870"
     tRNA            1996..2071
                     /locus_tag="VLM17_06870"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2029..2031,aa:Ile,seq:cat)
     gene            2165..2815
                     /locus_tag="VLM17_06875"
     CDS             2165..2815
                     /locus_tag="VLM17_06875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65305.1"
                     /translation="MKSLPVLLAALLAAPALAHSPAAHPGSAAPRAASATAPAAPKLQ
                     AALRALWHGHVVHARDYAMAVHGKRHVAATRAADAVVANAKQIAGAVGGFYGKAAGDQ
                     MLALLAGHWGAVKALTDARAAHDEAAASKAMNALTSNAGEIAKFLAGANPNLPEDTLR
                     GLLLAHGAHHAQQIQQVMGGDMKGEATTWKAMQAHMDTIADALAAAIAKQFPDKAA"
BASE COUNT          500 a         1019 c          926 g          428 t
ORIGIN      
        1 attcatcacg acgttcccga agaacgagac cagcaaccgc tggctgcaga agcacatgaa
       61 ggccggcaag aagtactcgg ccgtgctcgc gaaattcaag gacgagatcg aaaagcgcca
      121 gcagcgcctg ctcgagatcg agcagctgcg ccacctgtcg atcggcgaca tcaaggacat
      181 caaccgcgaa gtgtcgatcg gcgaagccaa ggcgcgccgc gcgaagaagg aaatggtcga
      241 ggccaacctg cgcctcgtga tctcgatcgc gaagaagtac acgaaccgcg gcctgcagtt
      301 cctcgacctc atccaggaag gcaacatcgg cctgatgaag gcggtcgaca agttcgaata
      361 ccgccgcggc tacaagttct cgacctacgc gacctggtgg atccgccagg ccatcacccg
      421 ctcgatcgcc gaccaggcgc gcaccatccg catcccggtg cacatgatcg agacgatcaa
      481 caagctcaac cgcatctcgc gccagatgct gcagcagttc ggccgcgagc cgacgcccga
      541 ggagctgtcc aaggaaatgg acatgcccga ggacaagatc cgcaaggtga tgaagatcgc
      601 gaaggaaccg atctcgatgg agacgccgat cggcgacgac gaggattcgc acctcggcga
      661 tttcatcgag gacaccaacg tcgagtcgcc gatcgacgcg accaccaaca ccaacctcac
      721 cgagacggtg cgcgaggtgc tggcggggct gacgccgcgc gaggccaagg tgctgcgcat
      781 gcgcttcggc atcgacatga acaccgacca caccctggaa gaggtcggca agcagttcga
      841 cgtcacccgc gagcgcatcc gccagatcga ggcgaaggcg ctgcgcaagc tgcgccaccc
      901 gagccgttcg gagcagctgc gttcgttcct cgacatcgac tgatcgtcgc gcggccgcac
      961 gggtccgccg ccggaagccc gccatgcgcg ggcttccgtg tttccggggc gcggcgcgca
     1021 acgaaggggt tgcctgggtc gcacgaatcg ccgaccctgt ggcggccatg accgccaccg
     1081 cgatcaccgg cgaagtccgc cgtttccttc tcgccgtcat ccccagcgtc ccgcatctgg
     1141 aggcgctgct cctgctgcgc gcgcaacctc gggcgtgggg cgtgcccgaa ctggcgcggc
     1201 gactgtacgt ggacgaggcg cccgtccagg cgctgctcga cgacctcgcc caggccggcc
     1261 tggtcgcctc cggcgacggc ggcgtgcgct acgccccggc cgccccggac gtcatggcga
     1321 cggtcgacga ggtcgcgctg gcctatggac ggcacgtcgt cgccgtcacc gaactgatcc
     1381 actccacctc ggaccgcaag gcacagcggt tcgcggacgc cttccgcctg cgcaaggagc
     1441 cctgagatgg aattcgtgat ctatgccttg tgcgcgttga cggccctcgg gtgcgccctg
     1501 ctgttgttcc aggcggcgct gcggacgcgt tcgcggatgc tgttcttcag cgcgttctgt
     1561 ttcgcgacgc tgacgatcac caacctgctg gtgctggtcg accacgccgt cgggcccagc
     1621 atcgacctgc gctggttgcg gctggtgacc gcggtggtcg cgatcgggct gctgctctac
     1681 gggctcatct tcgaggagaa atagcgatga accagttcat gctgggcgcg atcgcgatgg
     1741 gctccgcggt cgccgcgctg ttgttcttcc gctactggcg cagcagccac gaccgcctgt
     1801 tcctctactt cagcctgtca ttcgccaccg aagccttcga tcgcctgctg atggcgctgg
     1861 gccggctgga tgactcctcg accgtcttct acctgatccg cctgctgtcc tacgccctga
     1921 tcctgtgggc ggtgatcgag aagaacctga gcggccgcag ccggccgtag gccgctccgc
     1981 taccattcgc gcgccgggcc catagctcaa tggtcagagc aggggactca taatcccttg
     2041 gttccaggtt cgagtcctgg tgggcccacc aaggctttac acatgaagtg ctggcgcgta
     2101 gcgtcggagc ccggacgatg gcctggtcgc aatcggcgac cgcccggatc ccaccatgaa
     2161 cgccatgaaa tcccttcccg tcctgctcgc cgcgctgctc gccgcgccgg ccctcgccca
     2221 ttccccggcc gcccatccgg gatccgccgc tccccgggcg gccagcgcca ccgcgccggc
     2281 cgcgcccaag ctgcaggcgg ccctgcgcgc cctctggcac ggccacgtgg tgcatgcgcg
     2341 cgactacgcg atggcggtgc acggcaagcg ccatgtggca gcgaccaggg ccgccgatgc
     2401 ggtggtcgcc aacgccaagc agatcgccgg tgcggtcggc ggcttctacg gcaaggccgc
     2461 gggcgaccag atgctggccc tgctcgccgg ccactggggc gcggtcaagg cgctcaccga
     2521 cgcgcgcgcc gcgcacgacg aggccgccgc cagcaaggcg atgaacgccc tcaccagcaa
     2581 cgcgggcgag atcgccaaat tcctcgccgg cgccaacccg aacctgccgg aggacaccct
     2641 gcgcggcctg ctgctggcgc acggcgcgca ccacgcgcag cagatccagc aggtcatggg
     2701 cggggacatg aagggcgaag ccacgacctg gaaggcgatg caggcgcaca tggacaccat
     2761 cgccgatgcg cttgccgccg ccatcgccaa gcagttcccg gacaaggcgg cctgatggca
     2821 cagggcctgg cccggttcgg cgacacccag cagcggctgc tccggcagct gct
//
LOCUS       DATIQC010000325         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_515958, whole genome shotgun sequence.
ACCESSION   DATIQC010000325 DATIQC010000000
VERSION     DATIQC010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515958"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VLM17_06880"
     CDS             <1..295
                     /locus_tag="VLM17_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014506150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxylase"
                     /protein_id="HSR65306.1"
                     /translation="DAGLDEFKWFIYRFTSPTMKRLFANPRNVLRVEEAVVSMLAGDV
                     FDARPVLWRLRVFRLVYAVTTLRLAPMALRSWWRRRRQAAVGFNGETLQVENP"
     gene            292..1290
                     /locus_tag="VLM17_06885"
     CDS             292..1290
                     /locus_tag="VLM17_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019238098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pteridine-dependent deoxygenase"
                     /protein_id="HSR65307.1"
                     /translation="MSRPDPAPALTVPQLRVDYVHASDAQALLGEDVLAVLGFGDATP
                     AALPDPRYLRVPLQPHGGAPYEVWHTGRPVRRGRDGEIAWATDGALAFGVIEVPEAHG
                     ITAAAAHAYERLTAFVRDGGTPYLLRIWNYLDAITQGDGDTERYRQFCVGRAQGLGSF
                     DPTRLPAATAIGRCDDARVLQIYWLSANAPGTPIENPRQVSAYRYPRQYGPQPPSFAR
                     AMLPPTVTRMPLLLSGTAAVVGHASAHADALLAQIDETFLNFDALLGAARERQPALPP
                     QFGPGTRLKVYVRDRADLDTVADALHARLGSRVPYVVLHAAICRRELCIEIDGVHE"
     gene            1346..1594
                     /locus_tag="VLM17_06890"
     CDS             1346..1594
                     /locus_tag="VLM17_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65308.1"
                     /translation="MGIISLLWGIVAICWMLLALVPLLGWMNWFLIAFAAIGAVIAAV
                     GIAFTGRERRGRAKAGLVLNALVILVALVRLHLGGGLI"
     gene            1693..>2108
                     /locus_tag="VLM17_06895"
     CDS             1693..>2108
                     /locus_tag="VLM17_06895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HSR65309.1"
                     /translation="MLTNKAKYGLRAMCALAEVAPDSLQARAIATQARVPVKFLEAIL
                     VDLRRAGFVRSRRGQQGGHALARPAATITVGDLIRAIDGPLAPVRCASLSAYAACKDC
                     TDPEGCAVRALMREARTALAGVLDGCSLQVLAGHRDR"
BASE COUNT          271 a          786 c          741 g          310 t
ORIGIN      
        1 cgacgcgggc ctggacgagt tcaagtggtt catctaccgc ttcacctcgc cgaccatgaa
       61 gcggctgttc gccaacccgc gcaacgtgct gcgggtggag gaagcggtgg tctcgatgct
      121 cgccggcgac gtgttcgacg cgcgcccggt gctgtggcgc ctgcgcgtgt tccgcctcgt
      181 ctatgcagtg accacgctgc ggctggcgcc gatggcgctg cgcagctggt ggcggcgccg
      241 gcgccaggcc gctgtcggct tcaacggcga aaccctgcag gtggagaacc catgagccgt
      301 cccgaccccg cgcccgccct gaccgtgccg cagctgcgcg tcgactacgt gcacgccagc
      361 gacgcgcagg cgctgctcgg cgaggacgtg ctcgcggtgc tcggcttcgg cgacgccacg
      421 ccggcggcgc tgcccgatcc gcgctacctg cgcgtgccgt tgcaacccca cggcggcgcg
      481 ccctacgagg tctggcacac cggccgcccg gtgcggcgcg ggcgcgacgg cgaaatcgcc
      541 tgggcgaccg acggcgcgct ggccttcggc gtgatcgagg tgcccgaggc gcacggcatc
      601 accgctgccg ccgcgcacgc ctacgaacgc ctgaccgcgt tcgtgcgcga cggcggcacg
      661 ccctacctgt tgcgcatctg gaactacctc gacgcgatca cccagggcga cggcgacacc
      721 gagcgctacc gccagttctg cgtcgggcgc gcccagggcc tgggcagctt cgaccccacc
      781 cgcctcccgg ccgcgaccgc gatcggccgt tgcgacgacg cgcgcgtgct gcagatctac
      841 tggctgtcgg cgaacgcgcc cggcacgccg atcgagaacc cgcgccaggt cagcgcctac
      901 cgctacccgc gccagtacgg cccgcagccg ccgagcttcg cccgcgcgat gctgccgccg
      961 acggtgacgc gcatgccgct gctgctgtcg ggcaccgccg cggtggtcgg gcatgcgtcc
     1021 gcgcatgccg acgcgctgct cgcgcagatc gacgagacct tcctcaactt cgatgccctg
     1081 ctcggcgccg cgcgcgagcg ccagcccgcg ctgccgcccc agttcggccc gggcacgcgc
     1141 ctgaaggtgt acgtgcgcga ccgcgccgac ctcgacaccg tcgccgacgc gctgcatgcg
     1201 cgcctcggca gccgcgtgcc ctatgtcgtg ctgcacgcgg cgatctgccg gcgcgagctg
     1261 tgcatcgaga tcgacggcgt gcacgagtga acgccgcggc gaccagcgtg taccctgccg
     1321 gcttcggcca accgggagcg tggtgatggg gatcatcagc ctgctgtggg gaatcgtcgc
     1381 gatctgctgg atgctgctgg cgctggtgcc gctgctcggg tggatgaact ggttcctgat
     1441 cgccttcgcc gcgatcggcg cggtgatcgc cgcggtgggc atcgccttca ccgggcgcga
     1501 gcgccgcggt cgcgccaagg ccggactggt cctgaacgcg ctggtgatcc tcgtcgcgct
     1561 ggtccgcctg cacctcggcg gcggcctgat ctgagcttca ttggcggacc gctggtcggc
     1621 caacgcctcg cctgacgctt ttcggacgaa cgcttcacgc ccggaaaaca ttccctatag
     1681 aaactgtagg gaatgctgac gaacaaggcc aagtacggac tccgcgcgat gtgcgcgctc
     1741 gccgaggtcg cgcccgactc gctgcaggcg cgcgccattg cgacccaggc gcgggtgccg
     1801 gtgaagttcc tcgaggcgat cctggtcgac ctgcgccggg ccggcttcgt gcgcagccgc
     1861 cgcggtcagc agggagggca tgccttggcc cggccggcgg ccacgatcac cgtcggcgac
     1921 ctgatccgag ccatcgacgg gccgctcgcg ccggtgcgct gcgccagcct cagcgcttac
     1981 gccgcgtgca aggactgcac cgatcccgaa ggttgcgcgg tgcgcgcgct gatgcgcgag
     2041 gcgcgcacgg cactggccgg cgtgctcgac ggctgcagcc tgcaggtcct tgccggccac
     2101 cgcgatcg
//
LOCUS       DATIQC010000326         3775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_21743, whole genome shotgun sequence.
ACCESSION   DATIQC010000326 DATIQC010000000
VERSION     DATIQC010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3775
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21743"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            261..728
                     /locus_tag="VLM17_06900"
                     /pseudo
     CDS             261..728
                     /locus_tag="VLM17_06900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661733.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YetF domain-containing protein"
     gene            complement(827..1777)
                     /gene="hemF"
                     /locus_tag="VLM17_06905"
     CDS             complement(827..1777)
                     /gene="hemF"
                     /locus_tag="VLM17_06905"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014162069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HSR65310.1"
                     /translation="MSHSVENDADFDRVRGYLLGLQDRICAAIEQADGGARFAEDAWT
                     RDAGGASDIHGGGRTRVLREGAVFEQAGVGFSDVAGTRLPPSATAARPELAGASWRAV
                     GVSLVFHPRNPYLPTTHANVRHFRAMRDGETVAWWFGGGFDLTPFYPLDDDVLHWHRT
                     ARALCAPFGGDARYDAHKRWCDEYFFLKHRGETRGIGGLFFDDLHTDFDADFGYLRAV
                     GDGFLDAYLPLVARRRGTPYGERERAFQLYRRGRYVEFNLVYDRGTLFGLQSGGRSES
                     ILMSLPPLVRWEYGYAPEPGSAEARLADYLRPRDWLGELG"
     gene            complement(1774..3393)
                     /locus_tag="VLM17_06910"
     CDS             complement(1774..3393)
                     /locus_tag="VLM17_06910"
                     /inference="COORDINATES: protein motif:HMM:NF028537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine--lipid A transferase"
                     /protein_id="HSR65311.1"
                     /translation="MTTRRPSLRAGSAVLAAALFLLVAGNLRFWQVAFAALPAGPLAQ
                     ARFVAGLGAVLLALILVVLLPLAFGRLLKPWLSLVLLLAASAAFFMHDYGAVVDRFAL
                     QSVLETDAREAGEWLSLRAFGTLLLLGVLPAALLAWVRVERRPWRAELAGWLKLAALA
                     AALLAAGVLVGGREIASTVRNHKQLRYLMNPVSLVSASLAYADARGTATPAVVAPLGR
                     DARRDGAMAAGARPLVLVLVIGESARAQSFQLDGYPRPTNPELSARPVANFPDVRSCG
                     TNTAVSVPCMFSDLGRADYAQAGAAARENLLDVLAHAGFRVDWYDNNTGSKGVAARVH
                     EEQLAELQDPRFCTYGCWDGLLVDRLQHELAATHADRVVVLHTKGSHGPAYSLRYPPA
                     FERFTPACRSNELSRCTPEQIRNAYDNSILYTDHVIASAIDALAAQPGADGALVYVSD
                     HGESTGEHGLYLHGAPYLVAPDAQTRVPMLLWLSEGFRARRGVDMACVDRQRHLPASH
                     DNLFDLVLGLLEVRTEAYRARLDPLSPCSPP"
     gene            complement(3425..>3775)
                     /locus_tag="VLM17_06915"
     CDS             complement(3425..>3775)
                     /locus_tag="VLM17_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR65312.1"
                     /translation="FKAGAALRPVSDWSQYNHEYTSNILNTPELDPEAYRRSSPIEFA
                     AGLQDHLLIAHGMIDDNVFFKDSIDMTQKLIELHKDKWSIAPYPLERHGFTHADAWYD
                     EYRRIYELFEANLK"
BASE COUNT          536 a         1290 c         1424 g          525 t
ORIGIN      
        1 tgtgcgcaca gaactttggg ccccagctgg tacacccgat ccctgcgctg ccgcgcgccc
       61 ccttaccaag ggggctgggc cccccagccg ggttgctcgt gctttggggg ctgttcctcc
      121 agacgggtcg tacttctctc cctctcccgc tcgcgggaga gggtcggggt gagggcagac
      181 tttcgtgcgg tcgcatgtcg cgggcttccc aagccccgcc cggcatggct tgatgcgcca
      241 tcgaagtcgt gggggaaggc atgtcggacc tgttcgcgct gtcggcgccg tggtggcact
      301 tcgtgctgcg cgcggtcgcg gtctacctga tggtgatggt gctggtgcgg gtgtcgggca
      361 agcgcgcggt cgggcagttc acgccgttcg acctcgtgct gctgatcctg atcggcaatg
      421 ccgtgcagaa cgggctcaac ggcggcgaca actcgatcac cggcgcgctg gtcctggccg
      481 gctgcctgat cgtgctgaac tacggggtcg cctggctcac cgcgcgctcc cggcgcgccg
      541 agcactggat cgagggcgtg ccgatggtga tcgcgcgcga cggcgtggtg ttcgaggacg
      601 tgctgcgcca cgagctggtc agcgtcgacg acttccacga ggcgctgcgg atgaacaatg
      661 tcgcggacgt gcaggacgtg gcgcttgcgc tgctggaaac caacggcaac atcagcgtgg
      721 tgtcgaaggg cgagggcggc gccgagcgcg cggcgaaata cctgggccgg ctgccgaaac
      781 gctcgctgca ccggcgccgg cgtcggcccg gcagcccgca ggccgactag ccgagttcgc
      841 ccagccagtc gcgcggtcgc aggtagtcgg ccaggcgcgc ctcggcgctg ccgggctccg
      901 gcgcgtagcc gtattcccag cgcaccagcg gcggcaggct catcaggatc gactcgctgc
      961 ggccgccaga ctgcaggccg aacagcgtgc cgcggtcgta caccaggttg aattcgacgt
     1021 agcggccgcg gcggtagagc tggaacgcac gctcgcgctc gccgtacggc gtgccccggc
     1081 ggcgcgcgac cagcggcagg taggcgtcga ggaagccgtc gcccaccgcg cgcaggtagc
     1141 cgaagtcggc gtcgaagtcg gtgtgcaggt cgtcgaagaa caggccgccg atgccgcgcg
     1201 tttcgccgcg gtgcttcagg aagaagtact cgtcgcacca gcgcttgtgc gcgtcgtagc
     1261 gcgcgtcgcc gccgaatggc gcgcacagcg cgcgcgcggt gcggtgccag tgcagcacgt
     1321 cgtcgtcgag cgggtagaac ggcgtcaggt cgaagccgcc gccgaaccac cacgccaccg
     1381 tctcgccgtc gcgcatcgcg cggaagtggc gcacgttggc atgggtggtc ggcaggtacg
     1441 ggtttcgcgg gtggaacacc agcgagacgc cgaccgcgcg ccacgacgcg ccggcgagct
     1501 cgggccgcgc cgcggtcgcc gacggcggca ggcgcgtgcc ggcgacgtcg gagaagccga
     1561 ccccggcctg ctcgaacacc gcgccctcgc gcagcacgcg ggtgcggccg ccgccgtgga
     1621 tgtcgctggc gccgccggca tcgcgcgtcc acgcatcctc ggcgaagcgc gcgccgccgt
     1681 cggcctgctc gatcgccgcg cagatgcggt cctgcaggcc cagcaggtag ccgcgcacgc
     1741 ggtcgaagtc ggcgtcgttt tcgacggaat ggctcatggc gggctgcagg gtgagagcgg
     1801 atcgaggcgc gcacggtagg cctcggtgcg cacctcgagc aagccgagca ccaggtcgaa
     1861 caggttgtcg tgcgaggccg gcaggtggcg ctgtcggtcg acgcaggcca tgtccacgcc
     1921 gcggcgggcg cggaatccct ccgacagcca cagcagcatg ggcacgcggg tctgcgcgtc
     1981 cggcgcgacc aggtagggcg cgccgtgcaa atacaggccg tgctcgccgg tggactcgcc
     2041 gtggtcggat acgtacacca gggcgccgtc cgcgcccggc tgcgcggcga gcgcgtcgat
     2101 cgccgaggcg atcacgtggt cggtgtagag gatgctgttg tcgtacgcgt tgcggatctg
     2161 ctccggcgtg cagcggctga gctcgttgct gcggcaggcg ggcgtgaagc gctcgaacgc
     2221 cggcgggtag cgcagggagt aggccggtcc gtggctgccc ttggtgtgca ggacgacgac
     2281 gcggtccgcg tgcgtcgccg caagctcgtg ctgcaggcga tcgaccagca ggccgtccca
     2341 gcagccgtag gtgcagaagc gcgggtcctg cagctcggcg agctgctcct cgtgcacgcg
     2401 cgcggcgacg cccttgctgc cggtgttgtt gtcgtaccag tcgacgcgga agccggcgtg
     2461 ggcgagcacg tcgagcaggt tctcgcgtgc cgcggcgccg gcctgcgcat agtccgcgcg
     2521 gccgaggtcg gagaacatgc acggcacgga cacggccgta ttcgtgccgc aggagcgcac
     2581 gtcggggaag ttggcgaccg gccgggccga cagctccggg ttggtcgggc gcgggtagcc
     2641 gtcgagctgg aagctctgcg cgcgcgccga ttcgccgatg accagcacca gcaccagcgg
     2701 gcgcgcgccg gccgccatcg cgccgtcgcg tcgcgcatcg cggcccagcg gcgcgacgac
     2761 cgccggcgtg gcggtgccgc gcgcgtcggc gtacgcgagc gacgccgata ccagcgacac
     2821 cgggttcatc aggtagcgca gctgcttgtg gttgcgcacc gtggaggcga tctcgcgccc
     2881 gccgaccagc acgccggccg ccagcaacgc cgcggccagc gcggccagct tcagccagcc
     2941 ggccagctcg gcgcgccacg gccggcgttc gacccgcacc cacgccagca gcgccgccgg
     3001 caagacgccg agcagcagca gcgtgccgaa cgcgcgcagc gacagccatt cgccggcctc
     3061 gcgcgcgtcg gtttcgagca cgctctgcag ggcgaagcgg tcgaccaccg cgccgtagtc
     3121 gtgcatgaag aacgcggcgc tcgcggcgag cagcagcacc agcgagagcc acggcttgag
     3181 cagccggccg aaggccagcg gcagcagcac gaccaggatc agcgccagca gcaccgcgcc
     3241 caagccggcg acgaagcgcg cctgcgccag cgggccggcc ggcagcgccg cgaacgccac
     3301 ctgccagaag cgcaggttgc cggcgacgag caggaacagc gcggccgcca gcaccgcgct
     3361 gcccgcgcgc aacgacgggc ggcgcgtggt catgcgcgtg gcgcgcgccg ggcgcggcag
     3421 gcggtcactt caggttcgcc tcgaacagct cgtagatgcg ccggtactcg tcgtaccacg
     3481 cgtccgcatg ggtgaagccg tggcgctcga gcgggtaggg cgcgatcgac cacttgtcct
     3541 tgtgcagctc gatgagtttc tgggtcatgt cgatcgagtc cttgaagaac acgttgtcgt
     3601 cgatcatgcc gtgcgcgatc agcaggtggt cctgcagtcc ggcggcgaac tcgatcggcg
     3661 aggagcgccg gtaggcctcg gggtcgagct cgggcgtgtt gaggatgttg ctggtgtatt
     3721 cgtggttgta ctgcgaccag tcgctgaccg gccgcagcgc ggcgccggcc ttgaa
//
LOCUS       DATIQC010000327         5422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_92609, whole genome shotgun sequence.
ACCESSION   DATIQC010000327 DATIQC010000000
VERSION     DATIQC010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5422
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92609"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..1036)
                     /gene="fliG"
                     /locus_tag="VLM17_06920"
     CDS             complement(38..1036)
                     /gene="fliG"
                     /locus_tag="VLM17_06920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HSR65313.1"
                     /translation="MPEQILSGVQRAAIVLLSLGEQQAAEVLKHMSAKEVQKLGVAMT
                     SVGSISRDSVVRVFDDFVDVLAQPSLGAGADDYVRAVLVQALGEERASSLIDRILLGR
                     NTSGLDSLKWMEPRAVADLVRNEHPQIIAIVMAHLDPDQAAEVLKCLPERARSDVLLR
                     IATLDGIPPHALNELNDVMARQFAGSQNIKSSSVGGIKVAANILNFMDGGQDETLLGA
                     ISEVDDALGVQIRDCMFVFDNLAEIDDRAMQAVLRDVPTDKLAVALRGADPRVKEKIT
                     ANMSQRAAEILVEDMEARGPVRLAEVEAAQKEILAIVRKMSESGEITLAAKAETFV"
     gene            complement(1038..2726)
                     /gene="fliF"
                     /locus_tag="VLM17_06925"
     CDS             complement(1038..2726)
                     /gene="fliF"
                     /locus_tag="VLM17_06925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HSR65314.1"
                     /translation="MSVIALPKSPGGLKDIGRLQDIPAVRQLALLAVAAAAIGLGLWL
                     FFWTQKPDYVPVYAGMDPKATSDASDLLRTQQIPFRIDAGSGALAVPADRLGDAKLAL
                     AGAGLSSNTGDGFESMEGDQGFGTSQFVENARYQHALETELARTIANLRPVREARVHL
                     ALPKPSAFTRTKEEATASVVLQLQSGATLEQGQVDAIVHLVASSIPDLAPERVTVVDQ
                     FGRLLSNPDPDSDAAIGAEQFDQQRRQEALVVQRIEQLLEPLTGPGRVSAQVSVDMDF
                     NQTEEARETYGPQAVRSEQVSESGTATPAGGGANAGAQGVPGSASNTPAAAAANAKAA
                     PAGGAPAQNAQNAAGNGDGTVLTGPTSRSSVRNFELDRTLTHTRQAPGKIRRITAAVL
                     VDNVPAGAPGADGKARTRALTPAETQRIQTLVQQAIGFDAQRGDVVSVVNQPFARDLG
                     DAADDAPPVWQNPRARDLLRTLLGGLAVLLVVWFVLRPAFRQLLQPRAAPVVRAELVE
                     DEEVPVAISAPGGGRVTAAQAMHFDDKLQVARNAVNTDAKRVAAVVRDWVGEDG"
     gene            complement(2820..3179)
                     /gene="fliE"
                     /locus_tag="VLM17_06930"
     CDS             complement(2820..3179)
                     /gene="fliE"
                     /locus_tag="VLM17_06930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005997134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HSR65315.1"
                     /translation="MTDAISSILSQIRAHEMRMRDIATDAAPANAVPGTLGGPAQAPG
                     AANGFSQTLSNAIDDVSRTQQSAADLQQAFELGDPKADLARVMVAMQQSQVAFRATVE
                     VRNRLVKAYQDVMNMPI"
     gene            complement(3243..4751)
                     /locus_tag="VLM17_06935"
     CDS             complement(3243..4751)
                     /locus_tag="VLM17_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSR65316.1"
                     /translation="MSESRILLLDADVARAERLATLLEFMDFTPRLCTEVSDLDLARA
                     KASDWVAVIVGDVAGDAQWPAFVRWLAAQALHPPLLELPGHADAAAWRADIHPDTVWP
                     LAWPARRTQLQELLRRASLKRIDDDARREAPTFGPTGRSAAVLRLSRMIDQVAAFDTT
                     VLVLGESGTGKEVAARSIHARSPRKDKPFVAINCGAIPPDLLESELFGHEKGAFTGAL
                     TQRKGRFEMAEGGTLLLDEIGDMPMAMQVKLLRVLQERCFERVGGGAPIQCNVRVIAA
                     THRNLEGHIADGKFREDLFYRLNVFPIEMPALRERGDDLPDLIAAITRQLAEGGRGQV
                     RLSADAVTALQHYPWPGNVRELSNLLERLAVLHPGATVRAGDLPARYRAAVPDAEPTP
                     ATLLAAANAPSSAPAPVPAAANDGVDPSTLSPTTTLPPQGIDLRTHIAGIELELIRAA
                     LAQAGGVVAHAAPLLGLRRTTLVEKLRKYGIGSDGLDQAGMDQAGLGLAAEA"
     gene            complement(4748..5137)
                     /locus_tag="VLM17_06940"
     CDS             complement(4748..5137)
                     /locus_tag="VLM17_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR65317.1"
                     /translation="MRKLRLLLVDDHPGFINAAVRHLRRLEWLEVAGMAGNGIEAITQ
                     CEALRPDVVLMDLAMPEMGGLQATRLIKAQDNAPYIVIASHFDDAEHREHTLRAGADA
                     FVSKLAYIHDVMPILERLAGRDAEMPA"
     gene            complement(5155..>5422)
                     /locus_tag="VLM17_06945"
     CDS             complement(5155..>5422)
                     /locus_tag="VLM17_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase sigma-54 factor"
                     /protein_id="HSR65318.1"
                     /translation="EVADAIGMHESTVSRITTGKYLQTPRGTFELKRLIDTEPANAPL
                     ADDVIAGLLARQGVRIARRTVAKYRDQLDIPSAMARRAPRAAIA"
BASE COUNT          665 a         1851 c         2070 g          836 t
ORIGIN      
        1 cccggcgcgg tccagcgcac cacctcgagc cgcgcgctca tacgaaggtt tccgccttgg
       61 ccgcgagggt gatctcgccg ctctcggaca tcttgcgcac gatcgcgagg atctccttct
      121 gcgccgcttc cacttccgcc agccgcaccg gcccgcgggc ctccatgtcc tcgaccagga
      181 tctcggccgc gcgctgcgac atgttggcgg tgatcttctc cttgacccgc ggatcggcgc
      241 cgcgcagggc gaccgcgagc ttgtcggtgg gcacgtcgcg caggaccgcc tgcatcgcgc
      301 ggtcgtcgat ctcggcgagg ttgtcgaaca cgaacatgca gtcgcggatc tgcacgccga
      361 gcgcgtcgtc gacctcgctg atcgcgccga gcagcgtttc gtcctggccg ccgtccatga
      421 agttgaggat gttggcggcg accttgatcc cgccgaccga cgaggacttg atgttctggc
      481 tgccggcgaa ctggcgcgcc atcacgtcgt tgagctcgtt cagcgcgtgc ggcgggatgc
      541 cgtccagcgt cgcgatgcgc agcagcacgt ccgagcgcgc gcgctcgggc aggcacttga
      601 gcacctcggc ggcctggtcg ggatccaggt gcgccatcac gatcgcgatg atctgcgggt
      661 gctcgttgcg cacgaggtcg gcgaccgcgc gcggctccat ccatttcagc gagtcgaggc
      721 cggaggtgtt gcggccgagc aggatgcggt cgatcaggct gctggcgcgc tcctcgccga
      781 gcgcctgcac cagcaccgcg cgcacgtaat cgtcggcgcc cgcgcccagg ctcggctggg
      841 cgagcacgtc gacgaaatcg tcgaacacgc gcaccaccga gtcgcgcgag atgctgccga
      901 ccgaggtcat ggcgacgccg agcttctgca cttccttggc gctcatgtgc ttgagcacct
      961 cggccgcctg ctgctcgccg agcgagagca ggacgatggc cgcgcgctgc acgccggaga
     1021 ggatctgctc gggcatgtca gccgtcctcc ccgacccagt cgcggaccac cgcggcgacg
     1081 cgcttggcgt cggtgttcac cgcattgcgc gcgacctgca gcttgtcgtc gaagtgcatc
     1141 gcctgcgccg cggtgacgcg gccgccgccg ggcgcgctga tggcgaccgg cacctcctcg
     1201 tcctcgacca gttcggcgcg caccaccggc gcggcgcgcg gctgcagcag ctggcggaag
     1261 gcggggcgga gcacgaacca caccaccagc agcaccgcga gcccgccgag cagcgtgcgg
     1321 agcaggtcgc gcgcgcgggg gttctgccag accggcggcg catcgtcggc ggcgtcgccg
     1381 aggtcgcgcg cgaacggctg gttgaccacc gagaccacgt cgccgcgctg ggcgtcgaag
     1441 ccgatcgcct gctgcaccag ggtctggatg cgctgggtct cggccggggt gagcgcgcgc
     1501 gtcctggcct tgccgtcggc gccgggcgcg ccggccggca cgttgtcgac cagcaccgcg
     1561 gcggtgatgc ggcggatctt gccgggcgcc tggcgggtgt gggtcagggt gcggtcgagc
     1621 tcgaagttgc gcacggaact gcgcgaggtc ggaccggtga gcacggtgcc gtcgccgttg
     1681 ccggcggcgt tctgcgcgtt ctgcgcggga gcgccgccgg caggcgcggc cttggcgttg
     1741 gccgcggccg cggccggcgt gttgctcgcg ctgccgggca cgccctgcgc gccggcgttg
     1801 gcgccgcccc cggccggggt ggcggtgccg gactcggaca cctgctcgct gcgcacggcc
     1861 tgcgggccgt aggtctcgcg cgcttcctcg gtctggttga agtccatgtc gacgctgacc
     1921 tgcgcgctga cgcggccggg gccggtgagc ggctcgagca gctgctcgat gcgctgcacg
     1981 accagcgctt cctgccggcg ctgctggtcg aactgctcgg cgccgatcgc ggcgtcgctg
     2041 tccggatcgg gattggacag caggcggccg aactggtcga ccacggtcac gcgctcgggc
     2101 gcgaggtcgg ggatgctgga cgcgacgagg tgcacgatcg cgtcgacctg gccctgctcg
     2161 agcgtggcgc cgctctgcag ctgcagcacc accgacgccg tggcctcctc cttggtgcgg
     2221 gtgaacgcgc tcggcttggg cagggcgagg tgcacgcgcg cctcgcgcac cgggcgcagg
     2281 ttggcgatgg tgcgggcgag ttcggtttcc agcgcgtgct ggtagcgcgc gttctcgacg
     2341 aactggctgg tgccgaaacc ctggtcgccc tccatcgatt cgaagccgtc gccggtgttg
     2401 ctggacaggc ctgcgccggc cagcgcgagc ttggcatcgc cgaggcggtc ggcaggcacc
     2461 gccagcgcgc cgctgccggc gtcgatgcgg aacgggatct gctgcgtgcg cagcaggtcc
     2521 gaggcgtcgg aggtcgcctt cgggtccatg ccggcataga ccggcacgta gtcgggcttc
     2581 tgcgtccaga agaacagcca caggcccagg ccgatcgccg ccgcggccac cgccagcagc
     2641 gcgagctggc gcaccgcggg gatgtcctgc agccggccga tgtccttcag gccgccgggg
     2701 gatttgggga gggcgatgac gctcatggcc gggatgcgtg ctcagttcgt gtcgtgaagg
     2761 gcgtgctgtg ctcgtcgggt gccgctgcct ggatcggcct gctttgaatc ggcctgccgc
     2821 taaatcggca tgttcatcac gtcctggtag gccttcacca ggcggttgcg cacctcgacg
     2881 gtggcgcgga aggcgacctg ggactgctgc atggcgacca tcacccgggc gaggtccgcc
     2941 ttcgggtcgc cgagttcgaa ggcctgctgc aggtcggcgg ccgattgctg ggtgcggctg
     3001 acgtcgtcga tcgcgttcga cagcgtctgc gagaagccgt tcgcggcgcc cggtgcctgc
     3061 gccgggccgc cgagcgtgcc gggcacggca ttggccggcg cggcatcggt ggcgatgtcc
     3121 cgcatgcgca tctcgtgcgc gcggatctgg gacaggatcg aggagatcgc gtcggtcatc
     3181 gcgggaatcc gtcgtggcgt cgggcctgca cggatcgatg caagccgcgt gccacgcccg
     3241 cgtcaggctt ccgccgccag ccccaatccg gcttgatcca tcccggcctg gtccagcccg
     3301 tcgctgccga tgccgtactt gcgcagcttc tccaccaggg tggtgcggcg caggccgagc
     3361 agcggcgcgg cgtgcgcgac cacgccgccg gcctgggcca gcgcggcgcg gatcagctcc
     3421 agctcgatgc cggcgatgtg ggtgcgcagg tcgatgccct gcggcggcag ggtggtggtc
     3481 ggcgacaggg tcgacggatc gacgccgtcg ttggccgcgg ccggcaccgg ggccggcgcc
     3541 gacgatggag cattcgcggc cgccagcagc gtggcggggg tcggttcggc gtccggcacg
     3601 gcggcgcggt agcgggcggg caggtcgccg gcgcgcacgg tcgcgcccgg gtgcagcacg
     3661 gcgaggcgtt cgagcaggtt cgacagctcg cgcacgttgc cgggccacgg gtagtgctgc
     3721 agcgccgtca ccgcgtcggc cgacaggcgc acctggccgc ggccgccctc ggcgagctgg
     3781 cgggtgatcg cggcgatcag gtcgggcagg tcgtcgccgc gctcgcgcag cgccggcatc
     3841 tcgatcggga acacgttgag gcggtagaac aggtcctcgc ggaacttgcc gtcggcgata
     3901 tggccctcga ggttgcggtg ggtcgcggcg atcacgcgca cgttgcactg gatcggggcg
     3961 ccgccgccga cgcgttcgaa gcagcgctcc tgcagcacgc gcaggagctt gacctgcatc
     4021 gccatcggca tgtcgccgat ctcgtccagc agcagggtgc cgccctcggc catttcgaag
     4081 cggcccttgc gctgggtgag cgcgccggtg aatgcgccct tctcgtggcc gaacagttcg
     4141 ctttcgagca ggtccggcgg gatcgcgccg cagttgatcg cgacaaatgg tttgtccttg
     4201 cgcggcgagc gcgcgtggat cgagcgcgcg gcgacttcct tgccggtgcc cgactcgccg
     4261 aggaccagca cggtggtgtc gaacgcggcg acctggtcga tcatgcgcga caggcgcagc
     4321 accgcggcgc tgcggccggt cgggccgaag gtcggcgcct cgcggcgcgc gtcgtcgtcg
     4381 atgcgcttga ggctggcgcg gcgcagcagt tcctgcagct gcgtgcggcg cgcgggccag
     4441 gcgagcggcc acacggtgtc ggggtggatg tcggcgcgcc acgcggcggc atcggcgtgg
     4501 ccaggcagct ccagcagcgg cgggtgcagc gcctgcgcgg ccagccagcg cacgaacgcc
     4561 ggccactgcg cgtcgccggc gacgtcgccg acgatcaccg cgacccagtc gctggccttg
     4621 gcacgggcga ggtcgaggtc ggacacctcg gtgcacagcc gcggggtgaa gtccatgaac
     4681 tccagcagcg tggccaggcg ctcggcgcgc gccacgtcgg cgtcgagcag gaggatgcgc
     4741 gattcgctca tgccggcatt tccgcgtcgc ggccggcgag gcgctcgagg atcggcatca
     4801 cgtcgtggat gtaggcgagc ttgctgacga aggcgtcggc gccggcgcgc agggtgtgct
     4861 cgcggtgctc ggcgtcgtcg aagtggctgg cgatgacgat gtagggcgcg ttgtcctgcg
     4921 ccttgatcag gcgggtggcc tgcaggccgc ccatttccgg catcgcgagg tccatcagca
     4981 ccacgtccgg gcgcagcgcc tcgcactggg tgatcgcctc gatgccgttg ccggccatcc
     5041 cggccacctc gagccactcg agcctgcgca ggtggcgcac ggcggcgttg atgaaacccg
     5101 ggtggtcgtc gaccagcagc agtctgagct tgcgcatggg ggtggcctcg aaggtcaggc
     5161 gatggcggcg cgcggggccc ggcgcgccat cgccgacggg atgtccagct ggtcgcggta
     5221 cttggcgacg gtgcggcgcg cgatgcgcac gccctggcgg gcgagcaggc cggcgatcac
     5281 gtcgtcggcg agcggcgcgt tcgccggctc ggtgtcgatc aggcgcttga gctcgaaggt
     5341 gccgcgcggc gtctgcaggt acttgccggt ggtgatgcgc gagacggtgg attcgtgcat
     5401 gccgatggcg tcggcgactt cc
//
LOCUS       DATIQC010000328         3636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_622363, whole genome shotgun sequence.
ACCESSION   DATIQC010000328 DATIQC010000000
VERSION     DATIQC010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622363"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..528)
                     /locus_tag="VLM17_06950"
     CDS             complement(139..528)
                     /locus_tag="VLM17_06950"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HSR65319.1"
                     /translation="MALAYWCLLIAALLPYLWVSIAKASGERYDNRNPRAWQARQDNP
                     RSQRAYAAQLNGFEAFAPFAAAVLMAQAAGIDPARIGQLAVAFVVLRVLHGLFYVLGI
                     AALRSLSWAGGIAVVVWLMLLAAQHAA"
     gene            complement(593..1273)
                     /locus_tag="VLM17_06955"
     CDS             complement(593..1273)
                     /locus_tag="VLM17_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65320.1"
                     /translation="MPRLRLLASALALTLALPLAHAAGADGRSIDKVNGSITASAGQA
                     WGALTTVNGSIHVEDGVTTGNAETVNGSIKVGDSARTGSLQTVNGSIRLGRDVQAGDL
                     TTVNGSVFADHGDRLARDIETVNGSIGLVHTELAGGIRTVTGDITVGVSSHVHGGIHV
                     EKQQHGWNLNLVRQRPPRIVVGPNATVDGPLVFEREVVLYVHDSAKTGPVTGAKVLHF
                     SGDHAPME"
     gene            1444..2964
                     /gene="gpmI"
                     /locus_tag="VLM17_06960"
     CDS             1444..2964
                     /gene="gpmI"
                     /locus_tag="VLM17_06960"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005101494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HSR65321.1"
                     /translation="MLMILDGWGHRDEPQDNALAQAKLPHWRALWAGCPHTLIHTEGR
                     HVGLPDGQMGNSEVGHMNLGAGRIVHQDLTRIDAAIEDGSFFDNPGLRGACEAVNAGG
                     GVLHVMGLLSPGGVHSHERHILAMLELARRMDVEQVCVHAFLDGRDTPPKSAAPSLAL
                     LQARCDELGNARIATIAGRYYAMDRDQRWDRVHRAWDAIVNAQADYHALDAQAALAAA
                     YARGETDEFVAPTVIAPPAGAARPMADGDAVVFMNFRADRARQLTAAFVAPEFAGFEA
                     RRPRLARFVGLSEYDAKLPAAVAFPTEDLRHGLGELLAEHHMSQLRIAETEKYAHVTF
                     FFSGGREDAYPGETRILVPSPKVATYDQQPEMSCPEVTAKLVEAIRAQAFDVIVCNIA
                     NPDLVGHTGNLQAAIAAAEAVDHALGQVVAAVRDVGGALLVTADHGNLEMMRDPQTGQ
                     PHTAHTVGPVPFVYVGARTGAKLRDGGALRDVAPTMLDLLGQPKPAEMSGSSLFCA"
     gene            3291..>3636
                     /locus_tag="VLM17_06965"
     CDS             3291..>3636
                     /locus_tag="VLM17_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HSR65322.1"
                     /translation="MRSTLAAQRQELAQLLRGAYTVGNAAPLKLMLAQDSVADANRLL
                     GYHRYLQRDRAARIAELGAQLQGLVALEQQLAEHRRQLDATRARQREELTGLARDRLS
                     HAHAVATLDERYR"
BASE COUNT          497 a         1335 c         1333 g          471 t
ORIGIN      
        1 gaggatgccg cgcgggtgtt cgcgccgggt ttcgagggcg tgctcgcggt cggcaagcgc
       61 aacttcgcgc gcgtgcgcct cgtcgcggcc tgacgctgcc cgccgcggcg cttcgcccca
      121 gccgcggcgc gcgatggttc aggccgcgtg ctgcgcggcc agcagcatca gccacaccac
      181 caccgcgatc ccgccggccc agctgaggct gcgcagcgcg gcgatgccga gcacgtagaa
      241 caggccgtgc agcacgcgca gcacgacgaa ggcgacggcg agctggccga tgcgcgccgg
      301 gtcgatgccc gccgcctgcg ccatcagcac cgcggcggcg aacggcgcga acgcctcgaa
      361 gccgttgagc tgggccgcgt aggcgcgctg gctgcgcggg ttgtcctggc gcgcctgcca
      421 ggcgcgcggg ttgcggttgt cgtagcgctc gccgctcgcc ttggcgatcg acacccacag
      481 gtagggcagc agcgccgcga tcaggaggca ccagtaggcc agggccatgc gcgcgatctc
      541 cgtcggggtt gcgcgaagct tgcgccgtcg cggggcgcct ggctagccgg gctcactcca
      601 tcggcgcgtg gtcgcccgag aagtgcagca ccttggcgcc ggtcaccggc ccggtcttcg
      661 cgctgtcgtg cacgtacagc accacttcgc gctcgaacac cagcgggccg tcgaccgttg
      721 cattcggccc gaccacgatc cgcggcgggc gctgcctgac gaggttcagg ttccagccgt
      781 gctgctgctt ctcgacgtgg atgccgccgt gcacgtgcga gctgacgccg acggtgatgt
      841 cgccggtgac cgtgcggatg ccgccggcga gttcggtgtg gaccaggccg atcgaaccgt
      901 tgacggtctc gatgtcccgc gcgagccggt cgccgtggtc ggcgaagacg ctgccgttga
      961 cggtggtgag gtcgccggcc tgcacgtcgc ggccgagccg gatgctgccg ttgacggtct
     1021 gcaggctgcc ggtgcgcgcg ctgtcgccga ccttgatgct gccattgacg gtttcggcgt
     1081 tgccggtggt cacgccgtcc tcgacgtgga tgctgccgtt gaccgtggtg agcgcgcccc
     1141 acgcctggcc ggcgctggcg gtgatgctgc cgttgacctt gtcgatgctg cggccgtcgg
     1201 cgccggccgc gtgcgcgagc ggcagggcca gggtgagcgc gagggcggag gcgagcaggc
     1261 ggaggcgggg catggcgaag tcctgtcggg tggtggggac tgggatgcgg ccggtgggcg
     1321 atcggtttac gcgggcgttg ccgcggcggc gaaaggcatg ctcggccgct tcgctacaat
     1381 ccgcccctgt ccgaagtcat ggggcccgtc gtgccagccg agcaaccgcg tccgcaaccc
     1441 gtcgtgctga tgatcctgga tggctggggc caccgcgacg agccgcagga caacgcgctg
     1501 gcgcaggcga agctgccgca ctggcgggcg ctctgggccg ggtgcccgca cacgctcatc
     1561 cataccgaag gccgccacgt cggcctgccg gacgggcaga tgggcaactc cgaggtcggc
     1621 cacatgaacc tcggcgccgg ccgcatcgtc caccaggacc tgacccggat cgacgccgcg
     1681 atcgaggacg gcagcttctt cgacaacccc gggctgcgcg gcgcctgcga ggcggtcaac
     1741 gccggcggcg gcgtcctgca cgtgatgggc ctgctgtcgc cgggcggcgt gcacagccac
     1801 gagcggcaca tcctcgcgat gctcgagctc gcccggcgca tggacgtcga gcaggtgtgc
     1861 gtgcacgcgt tcctcgacgg ccgcgacacc ccgccgaaat ccgcggcgcc gagcctggcg
     1921 ctgctccagg ccaggtgcga cgagctgggc aacgcgcgca tcgccacgat cgccggacgc
     1981 tactacgcga tggaccggga ccagcgctgg gaccgcgtgc accgcgcgtg ggacgcgatc
     2041 gtcaacgcgc aggccgacta ccacgcgctc gacgcgcagg ccgcgctcgc cgcggcctac
     2101 gcgcgcggcg agaccgacga gttcgtcgcg ccgacggtga tcgcgccgcc ggccggcgcg
     2161 gcgcggccca tggccgacgg cgacgcggtg gtgttcatga atttccgcgc cgaccgcgcg
     2221 cgccagctca ccgccgcctt cgtcgcgccg gagttcgccg gcttcgaggc gcgccgcccg
     2281 cgactggcgc gcttcgtcgg cctgagcgaa tacgacgcga agctgccggc ggcggtggcc
     2341 ttcccgacgg aagacctccg ccacggcctc ggcgagctgc tcgccgagca ccacatgagc
     2401 cagctgcgca tcgccgagac cgagaagtac gcgcacgtca ccttcttctt cagcggcggc
     2461 cgcgaggacg cctatccggg tgaaacccgg atcctggtgc cgagcccgaa ggtcgccacc
     2521 tacgaccagc agcccgagat gagctgtccg gaagtcaccg cgaagctggt cgaggcgatc
     2581 cgcgcgcagg ccttcgacgt gatcgtctgc aacatcgcca atcccgacct ggtgggccac
     2641 accggcaacc tgcaggcggc gatcgcggcc gcggaagccg tcgaccacgc gctcggccag
     2701 gtcgtcgccg cggtgcgcga cgtgggcggt gcgctgctgg tcaccgccga ccatggcaac
     2761 ctcgagatga tgcgcgaccc gcagaccggc cagccgcata ccgcgcacac ggtggggccg
     2821 gtgcccttcg tctacgtcgg cgcgcgcacc ggcgcgaagc tgcgcgatgg cggcgcgttg
     2881 cgcgatgtcg cgccgaccat gctcgacctg ctcggccagc cgaagccggc cgagatgagc
     2941 gggagctcgc tgttctgcgc ctgatccggc cggcccggcc gccggcggcc ctgccggcgt
     3001 cggtcaggcg ccgtcgcgcg ctcgccggcg tcctgacgtt cgcctgggcg ctgcccgccc
     3061 tcgcgcagag cagccacgac gcccagcgcc ggctcgacgc ggcgaagaag gagctcaagg
     3121 ccgtcgccgc cgagcgccgc gagatcgaag gcgagcgcgg cgaggcctcg cgcgcgctgc
     3181 gcgcggtcga cgagaagctc ggtcgctcca gccgcgcgct gcacgacacc gaaggccagc
     3241 tgcaacagca gcaggcgcag gtcgccgacc tgcagcagcg acgcgacgcg ttgcgctcga
     3301 cgctcgcagc gcaacgccag gaactcgccc agctgctgcg cggcgcctac accgtcggca
     3361 acgccgcgcc gctcaagctg atgctcgcgc aggacagcgt cgccgacgcg aaccgcctgc
     3421 tcggctacca ccgctacctg cagcgcgacc gcgccgcgcg catcgccgaa ctcggcgccc
     3481 agctgcaggg cctggtcgcg ctcgagcagc agctcgccga acaccggcgg cagctcgacg
     3541 cgacccgcgc gcgccagcgc gaggaactca cggggctggc ccgggatcgc ctgagccacg
     3601 cgcatgcggt ggccacgctg gacgagcgct accgcg
//
LOCUS       DATIQC010000329         1723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_445703, whole genome shotgun sequence.
ACCESSION   DATIQC010000329 DATIQC010000000
VERSION     DATIQC010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445703"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /locus_tag="VLM17_06970"
     CDS             complement(<1..537)
                     /locus_tag="VLM17_06970"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase, FolE2/MptA family"
                     /protein_id="HSR65323.1"
                     /translation="MTGTPRSPVPLPDVAHDAAALARPLDWVGMERIALPVRLAGGDG
                     EAVQVAASADVFVDLRDGGARGIHMSRLYLQLQQAFASESITPAGLRRVLQGFVESQQ
                     GLSTGARLVLRYDHLLQRAALASGHLGWKQYPVSIEATLREGHLRLALVLAVEYSSTC
                     PASAALSRQLNAERFAGDF"
     gene            complement(626..1342)
                     /locus_tag="VLM17_06975"
     CDS             complement(626..1342)
                     /locus_tag="VLM17_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene/squalene synthase family protein"
                     /protein_id="HSR65324.1"
                     /translation="MNEPAASFVAKWRERWPEWGVAEVFVAPEERLRAVAWFALRQEL
                     TDAAWTGGDPRPGEAKLGWWADELLGWTQGRHRHPLAECLADASAPWDLLASCLPSLL
                     ASRERAVDADQALVAVEPFAEAVAGVAATLFASRTPAPSRNAALGLLAEQLLVQGEAS
                     APLLVRARLGGEVAAEEFARAWATELLARWPQPHDGARPGRIHAALLHARLQEFAADG
                     RLRPLSRWRSLWTAWRAARR"
     gene            complement(1339..>1723)
                     /locus_tag="VLM17_06980"
     CDS             complement(1339..>1723)
                     /locus_tag="VLM17_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005414020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HSR65325.1"
                     /translation="AIEDGGSRWGIVTNKPEYLARLLLPRLGWSTRCAVLLGGDSLPV
                     RKPDPLPLLHAARALGIAPGECVYVGDDERDIVAARAAAMPSIAALWGYRLEADDPIA
                     WQADRLALRPADLLDHATWPQRSVA"
BASE COUNT          234 a          647 c          649 g          193 t
ORIGIN      
        1 gaagtcgccg gcgaagcgct cggcgttgag ctggcgcgac agcgcggccg acgccgggca
       61 ggtgctcgaa tactcgaccg cgagcaccag cgcgaggcgc aggtggccct cgcgcaaggt
      121 cgcctcgatc gagaccggat actgcttcca cccgaggtgc ccgctggcca gcgccgcgcg
      181 ctgcagcagg tggtcgtagc gcagcaccag gcgcgcgccg gtcgacagtc cctgctgcga
      241 ttcgacgaag ccctgcagca cccgtcgcaa cccggccggc gtgatgcttt cgctggcgaa
      301 ggcctgctgc agctgcaggt acaggcgcga catgtggatg ccgcgggcgc cgccgtcgcg
      361 caggtcgacg aacacgtcgg cggaggccgc gacctgcacc gcctcgccat cgccgccggc
      421 gaggcgcacc ggcagcgcga tccgttccat cccgacccag tccagcgggc gcgccagcgc
      481 cgcggcgtcg tgggcgacgt cgggcagcgg gacgggcgag cgcggggttc cggtcacggt
      541 cgaggggcaa cgggcaggcg cgcattgtag ccggcgccag gtgacgtccc gcctgcggca
      601 ggcggaacgc tatgtcgcgg ggccttcacc ggcgcgcggc gcgccaggcg gtccacagcg
      661 aacgccagcg cgacagcggg cgcagccggc catcggccgc gaactcctgc agccgcgcat
      721 gcagcagggc cgcatggatg cggccgggcc tggccccgtc gtggggctgc ggccagcgcg
      781 ccagcagttc ggtcgcccac gcgcgggcga attcctcggc ggcgacttcg ccgccgagcc
      841 gcgcgcgcac cagcaacggc gccgacgcct cgccctgcac cagcagctgt tcggcgagca
      901 ggccgagcgc ggcgttgcgc gaaggcgcgg gcgtgcggct ggcgaacagc gtcgcggcga
      961 cgccggccac cgcttcggcg aagggctcca ccgccaccag cgcctggtcg gcatccaccg
     1021 cgcgctcgcg gctggcgagc agcgacggca ggcagctggc cagcaggtcc catggcgcgg
     1081 aagcatccgc gaggcattcg gcaagcggat gccggtggcg gccctgggtc cagccgagca
     1141 gctcgtccgc ccaccagccg agcttggcct cgcccgggcg gggatcgccg ccggtccagg
     1201 cggcgtcggt caattcctgc cgcagcgcga accaggccac cgcccgtagg cgttcctccg
     1261 gggcgacgaa cacctccgcc acgccccact cgggccagcg ctcgcgccat ttggcgacga
     1321 agctcgcggc cggctcgttc aagcgacgct ccgctgcggc caggtcgcgt ggtcgagcag
     1381 gtcggcggga cggagggcca ggcggtcggc ctgccaggcg atcgggtcgt cggcttccag
     1441 ccggtagccc cacagcgcgg cgatcgacgg catcgccgcg gcgcgcgcgg cgacgatgtc
     1501 gcgctcgtcg tcgccgacgt acacgcactc ccccggggcg atgccgagcg cgcgcgccgc
     1561 gtgcagcagc ggcagcggat cgggtttgcg caccggcagg ctgtcgccgc cgagcagcac
     1621 cgcgcaacgc gtgctccagc ccagccgcgg caacagcagg cgcgcgaggt attcgggctt
     1681 gttggtgacg ataccccagc ggctgccgcc gtcctcgatc gcg
//
LOCUS       DATIQC010000330         5571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_622477, whole genome shotgun sequence.
ACCESSION   DATIQC010000330 DATIQC010000000
VERSION     DATIQC010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5571
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622477"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VLM17_06985"
     CDS             <1..209
                     /locus_tag="VLM17_06985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65326.1"
                     /translation="PLQNMQRFVNRLTHEPLLLQSRTAFVAPPAHPANHLVELLASAH
                     HYPFARFPDREEAIAWLLSDEPPL"
     gene            242..1006
                     /locus_tag="VLM17_06990"
     CDS             242..1006
                     /locus_tag="VLM17_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR65327.1"
                     /translation="MDSSADKTAFITGATSGFGRAAAQRFVAGGWRVVATGRRADRLD
                     ALVGELGADHVHPACFDVRDADAMRAALDALPERFRTVDLLVNNAGLALGTRPAQDAS
                     LDDWRTMIDTNITALVTLTRALLPALIERRGAIVNVSSTAANYPYAGGNVYGGTKAFV
                     SQFSLNLRSDLHGTGVRVTSLEPGMAETEFTLVRTHGDRVASDALYAGVEPMTAADIA
                     ETLWWIAGLPPHLNVNRLELMPVRQSFAGFQLHRNS"
     gene            1009..1506
                     /locus_tag="VLM17_06995"
     CDS             1009..1506
                     /locus_tag="VLM17_06995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65328.1"
                     /translation="MAPPARHVGRALALALALASAPAPAQAADALRSAVGVLAGQLSD
                     GVARLDASELVVRRARNRVAVLFALEGPGGGNGRWQFLALYEPNESLRAGRAVAPRYR
                     LLALQRIGARGERLFDAASARFDGTRLLLQGAAFRAGDAMCCPSRPISRAFVLVDGRI
                     AESAG"
     gene            complement(1503..1775)
                     /locus_tag="VLM17_07000"
     CDS             complement(1503..1775)
                     /locus_tag="VLM17_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HSR65329.1"
                     /translation="MKRFLVLTLRTPAFDPAVIAPHYAHLDALRERGALELWGPFGDR
                     SGGAYVVRAASLEAAQALAFADPLHTSGASEVSVREWILSAAESPA"
     gene            complement(1772..3688)
                     /gene="speA"
                     /locus_tag="VLM17_07005"
     CDS             complement(1772..3688)
                     /gene="speA"
                     /locus_tag="VLM17_07005"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014091293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HSR65330.1"
                     /translation="MTAWSLDQARKTYSIPHWAGGYFDLDDAGRIVARPNGANGPAIA
                     LADVVDAARANGAQLPLLVRFPDILGDRLRQLQAAFAKAQAEWEYAGGYTAVYPIKVN
                     QHAGVAGVLATHAGEGFGLEAGSKPELMAVLALSRPGGLIVCNGYKDREYIRLALIGR
                     RLGLETFIVVEKPSELPLILEEARALGVTPGIGVRMRLASLGAGKWQNSGGDKAKFGL
                     SPRQVLDLWKALRDAGLGDCLQLLHFHMGSQISNVRDIASGMREAVRYFVELSKLGAR
                     VKYMDVGGGLGVDYEGTRSRSYCSINYGLDQYAGNIVQPLAEACAQHALPPPRLVTEC
                     GRAMTAHHAVLVANVAEVERAPEGRVPPAHADEPLAIAHLRELHAELDARPPVELFHD
                     AQYRHAEGLSLFALGQLDLAHRARIDDLFYAIAHGVRQRLDVGERNHRELLDELNERL
                     VDKYFVNFSVFESMPDVWAIDQVFPIAPIERLDEAPERRGVIADMTCDSDGKIDTYVE
                     NAGLDSSLPLHALRHGEQYRLGFFLVGAYQEILGDIHNLFGDTDAVEVHLTADGGHAM
                     TRQRRGDTTDVMLDYVGYRLEDLRRAYRDKVAAAGLPDAEAARLDAALEAGLTAYTYL
                     SDEPLATPAAAASA"
     gene            3833..4690
                     /gene="speE"
                     /locus_tag="VLM17_07010"
     CDS             3833..4690
                     /gene="speE"
                     /locus_tag="VLM17_07010"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HSR65331.1"
                     /translation="MTEPRWHYENFDPTGSAIGYRITGKLDEVQSPFQKIEIYGTTDW
                     GRLMLIDGAVMLTTRDNFLYHEMMSHPALFTHAAPRRVVIIGGGDCGTLREVLRHPGV
                     EEAVQCDIDEQVTRMAEKWFPELCESNGDARAQLLFDDGIAYMANCAPGSVDVVIVDS
                     TDPVGPAEGLFNKAFYESCFRALKDDGILVQQSESPLALLPLIRAMREEMGKAGFAAF
                     KTLPFPQPCYPTGWWSCTLARKPGADAAFGFREQDARDKAFPTRYYSAGVHRGALATP
                     PFVAEALGG"
     gene            4815..>5571
                     /locus_tag="VLM17_07015"
     CDS             4815..>5571
                     /locus_tag="VLM17_07015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65332.1"
                     /translation="MRHGYPLLAVVLLLCSGSGRAEPARSQPMGPFESAAVTALPVPS
                     FDGEFDRLDRGEIWKLDAAATAQRLEALARLVPRGDAHRALLYQSLRCNWGYRNDVRT
                     QQEAAEAGLARARQAGDREAQIRFLYCRAGAREQLATPREAMADYAAGIDLARDAEDP
                     RLLADGLVARGGVQSLLGEQGRAVLDLLAAQRIYERIGDRNDADANVLNIAVAYRRMG
                     DVDKAAEYLAQSEQYASLSGDWSTLVSTLMQQGY"
BASE COUNT          789 a         1999 c         1994 g          789 t
ORIGIN      
        1 agccgctgca gaacatgcaa cgtttcgtca accggctcac ccacgagccg ctcctgctgc
       61 agtcgcgcac cgccttcgtg gcgccgccgg cgcatccggc caaccacctg gtcgaactgc
      121 tggcgtccgc gcaccactat ccgttcgcgc gctttcccga ccgcgaggag gcgatcgcct
      181 ggctgctcag cgacgaaccg ccgctgtgaa ccaccgcgcc gcgcgccgct agaatcgcgg
      241 catggacagc tccgccgaca agaccgcctt catcaccggc gcgacctccg gcttcggccg
      301 cgccgccgcg cagcgcttcg tcgccggcgg ctggcgggtc gtcgcgaccg gccgccgcgc
      361 cgaccgcctc gacgcgctgg tcggcgaact cggcgccgac cacgtgcacc cggcctgctt
      421 cgacgtgcgc gacgccgacg ccatgcgcgc cgccctcgac gcgctgcccg agcgcttccg
      481 cacggtcgac ctgctggtca acaacgccgg gctcgcgctc gggacccggc ccgcgcagga
      541 cgccagcctc gatgactggc gcacgatgat cgacaccaac atcaccgcgc tggtgacgct
      601 gacccgcgcc ctgctgcctg cgctgatcga acgccgcggc gccatcgtca acgtcagctc
      661 gaccgcggcc aactacccgt acgcgggcgg taacgtgtac ggcggcacca aggctttcgt
      721 cagccagttc tcgctcaacc tgcgcagcga cctgcacggc accggcgtgc gggtgacctc
      781 gctcgagccc ggcatggcgg aaaccgagtt caccctggtg cgcacgcacg gcgaccgcgt
      841 cgcctccgac gcgctgtacg cgggcgtgga gccgatgacc gccgccgaca tcgccgaaac
      901 gctgtggtgg atcgccggcc tgcccccgca cctcaacgtc aaccggctgg aactgatgcc
      961 ggtgcggcag tcgttcgcgg gcttccagtt gcaccggaac agctgagcgt ggcaccgccg
     1021 gcccggcacg tgggccgcgc gctggcgctt gccctggcgc tcgcgtcggc acccgcgccg
     1081 gcgcaggcgg cggatgcgct gcggtccgcg gtgggcgtgc tcgccggcca gttgtccgat
     1141 ggcgtggccc ggctggacgc gagcgagctc gtggtccggc gcgcacgcaa ccgcgtcgcc
     1201 gtgctgttcg ccctggaggg gcccggcggc ggcaacggtc gctggcagtt cctggcgttg
     1261 tacgagccga acgaaagcct ccgcgccggg cgcgcggtcg cgccacgcta tcggctgctc
     1321 gccttgcagc gcatcggcgc ccgcggcgaa cggctgttcg acgcggcaag cgcgcgcttc
     1381 gacgggacca ggctgctgct gcagggggcg gcgttccgcg ccggcgacgc gatgtgctgc
     1441 ccgtcgcggc cgatcagccg ggcgttcgtg ctggtggacg ggcggatcgc cgagtcggcg
     1501 ggctaggccg gcgactcggc cgcggacagg atccactccc gcacgctgac ctccgaggcg
     1561 ccgctggtat gcagcgggtc cgcgaacgcc agtgcctgcg ccgcctcgag cgacgcggcg
     1621 cgcaccacgt aggcgccgcc gctgcggtcg ccgaacggtc cccacagttc cagcgcgccg
     1681 cgttcccgca gtgcatccag gtgcgcgtaa tgcggcgcga tcaccgccgg atcgaaggcc
     1741 ggcgtgcgca gcgtcagcac caggaagcgt ttcacgccga cgcggccgcg gcgggcgtcg
     1801 ccagcggttc gtcgctgagg taggtgtagg cggtgaggcc tgcctcgagc gcggcgtcca
     1861 ggcgcgccgc ttcggcatcc ggcagtcccg ccgccgccac cttgtcgcgg taggcacggc
     1921 gcaggtcctc cagccggtag ccgacgtagt ccagcatgac gtcggtggtg tcgccgcggc
     1981 gctggcgcgt catcgcgtgg ccgccgtccg cggtgaggtg cacttcgacc gcgtcggtgt
     2041 cgccgaacag gttgtggatg tcgcccagga tctcctggta ggcgccgacc aggaagaagc
     2101 cgagccggta ctgctcgccg tggcgcagcg cgtgcaacgg caacgagctg tccaggccgg
     2161 cgttctcgac ataggtgtcg atcttgccgt cggagtcgca ggtcatgtcg gcgatcacgc
     2221 cgcgccgttc cggtgcctcg tccaggcgtt cgatcggcgc gatcgggaac acctggtcga
     2281 tcgcccacac gtccggcatg gactcgaaca cgctgaagtt gacgaagtac ttgtcgacca
     2341 ggcgctcgtt cagttcatcg agcagttcgc ggtggttgcg ctcgcccacg tccaggcgct
     2401 ggcgcacgcc gtgggcgatc gcgtagaaca ggtcgtcgat gcgcgcgcgg tgggcgaggt
     2461 cgagctggcc gagcgcgaac agcgacaggc cttcggcgtg gcggtactgg gcgtcgtgga
     2521 agagttccac gggcggacgg gcgtcgagtt cggcgtgcag ttcgcgcagg tgcgcgatcg
     2581 ccagcggctc gtcggcgtgc gccggcggca cccggccttc gggcgcgcgc tcgacttcgg
     2641 cgacgttggc gaccagcacg gcgtggtgcg cggtcatcgc gcggccgcat tcggtgacca
     2701 ggcggggcgg cggcagcgcg tgctgcgcgc aggcctcggc gagcggctgc acgatgttgc
     2761 cggcgtactg gtccaggcca tagttgatcg agcagtagct gcgcgagcgg gtgccctcgt
     2821 agtcgacgcc gaggccgccg ccgacgtcca tgtacttcac cctggcgccg agcttcgaca
     2881 gttcgacgaa atagcgcacc gcctcgcgca tgccgctggc gatgtcgcgc acgttggaga
     2941 tctgcgagcc catgtggaag tgcagcagct gcaggcagtc gcccaggccg gcgtcgcgca
     3001 gcgccttcca caggtccagc acctggcgcg gcgacaggcc gaacttggcc ttgtcgccgc
     3061 cgctgttctg ccacttgccg gcgccgagcg aggccaggcg catgcgcacg ccgatgcccg
     3121 gggtgacgcc gagcgcgcgc gcttcctcca ggatcagcgg cagctccgac ggcttctcga
     3181 ccacgatgaa ggtttcgagg ccgagccggc gcccgatcag ggcgaggcgg atgtactcgc
     3241 ggtccttgta gccgttgcac acgatcagcc cgcccgggcg cgacagcgcg agcaccgcca
     3301 tcagttcggg cttgctgccg gcctcgaggc cgaagccttc gccggcgtgc gtggcgagca
     3361 ccccggccac gccggcgtgc tggttgacct tgatcgggta caccgcggta tagccgccgg
     3421 cgtactccca ttcggcttgc gccttggcga acgcggcctg cagctggcgc aggcgatcgc
     3481 cgaggatgtc ggggaagcgc accagcagcg gcagctgggc gccgttcgcg cgcgcggcat
     3541 cgaccacgtc ggccagggcg atcgccggcc cgttcgcgcc attcgggcgc gcgacgatgc
     3601 ggccggcgtc gtcgaggtcg aaataaccgc cggcccagtg cgggatcgaa taggtcttgc
     3661 gggcctggtc gagcgaccac gcggtcatcg gcggcattcc gtcgggaagc gaggggcgcg
     3721 cagtgtagcg cccgcgacgc gatggggacg tccgccacca aggcgcgcct tgaacggagg
     3781 cagacgcccg ctccgctaca atccgcgccc cccgaatgca cggaccgccc cgatgaccga
     3841 gccccgctgg cactacgaga acttcgatcc gaccggctcg gcgatcggct atcgcatcac
     3901 cggcaagctc gacgaggtgc agtcgccgtt ccagaagata gagatctacg gcacgaccga
     3961 ctggggccgc ctgatgctga tcgacggcgc ggtgatgctg accacgcgcg acaacttcct
     4021 ctaccacgag atgatgtcgc acccggccct gttcacccac gcggcgccca ggcgcgtggt
     4081 gatcatcggc ggtggcgact gcggcacgct gcgcgaggtg ctccggcatc ccggcgtgga
     4141 agaggccgtg cagtgcgaca tcgacgagca ggtcacgcgc atggcggaga agtggttccc
     4201 cgagctgtgc gaatccaacg gggatgcgcg cgcgcaactg ctgttcgacg atggcatcgc
     4261 ctacatggcg aactgcgcgc cgggcagcgt ggacgtggtg atcgtcgatt cgaccgatcc
     4321 ggtcggcccg gccgagggcc tgttcaacaa ggccttctac gagagttgct tccgcgcgtt
     4381 gaaggacgac ggcatcctgg tgcagcagtc ggagtcgccg ctggcgctcc tgccgctgat
     4441 ccgcgcgatg cgcgaggaaa tgggcaaggc cggcttcgcg gcattcaaga ccttgccgtt
     4501 cccgcagccg tgctacccga ccggctggtg gagctgcacg ctcgcgcgca agccgggggc
     4561 ggacgcggca ttcggcttcc gcgagcagga cgcgcgcgac aaggccttcc ccacccgcta
     4621 ctacagcgcc ggcgtgcacc ggggcgcgct cgccacccca ccattcgtgg ccgaggcgct
     4681 cggcggctga gggccgcacc ccggcaaact gtgccggtgg tcacaaatca tgcgcgccgg
     4741 cgctgcgggc gcagacgcgg gcagaggaga atccccgggc cggttcaggg ggggcctgcc
     4801 ggcaaggacc acgcgtgcgc catggctatc cgctgctggc tgtcgtgctg ctgctctgtt
     4861 ccggcagcgg cagggcggag cctgcgcgca gccagccgat gggccctttc gagagcgcgg
     4921 ccgtcaccgc cctgccggtg ccatccttcg atggcgaatt cgaccgcctc gaccgcggcg
     4981 aaatctggaa actggacgcc gccgccaccg cgcaacggct cgaggcgctc gccaggctgg
     5041 tgccgcgcgg cgacgcccat cgcgcattgc tgtaccagtc gctgcgctgc aactggggtt
     5101 accgcaacga cgtccgcacc cagcaggaag ccgccgaggc gggcctggcg cgcgcgcgcc
     5161 aggccggcga ccgcgaggcg cagatccgct tcctgtattg ccgggcgggc gcgcgcgagc
     5221 agctggccac gccgcgggag gcgatggccg actacgccgc cggcatcgac ctggcgcggg
     5281 acgcagagga tccgcgcctg ctcgccgatg gcctggtcgc gcgcggcggc gtgcagtcgc
     5341 tgctcggcga acagggtcgc gcggtgctcg acctgctcgc ggcgcagcgc atctacgagc
     5401 ggatcgggga ccgcaacgac gccgacgcca acgtgctcaa catcgccgtc gcctaccgcc
     5461 gcatgggcga cgtcgacaag gccgccgagt acctcgcgca gagcgagcag tacgccagcc
     5521 tgagcggcga ctggagcacg ctggtctcca cgctgatgca gcagggctac c
//
LOCUS       DATIQC010000331         3975 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_587363, whole genome shotgun sequence.
ACCESSION   DATIQC010000331 DATIQC010000000
VERSION     DATIQC010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3975)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587363"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1007
                     /locus_tag="VLM17_07020"
     CDS             <1..1007
                     /locus_tag="VLM17_07020"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HSR65333.1"
                     /translation="IVVANLLAREAQEAAAPARPRPPQRPGFGGMNVQFSFGSAPPRP
                     ATRAAPVPATRSQGAARFERPVILLSAPRSGSTLLFETLSQAPGLLTIGHESHRTIEG
                     LPGLHPAARGYGSNRLTAEDASDEIAEALRSAFAGALRDRDGRPPLPGRPVRLLEKTP
                     KNILRVPFLRRVFPDALFVYLYREPRPVLASMIEAWQSGRFRTYAELPGWVGPPWSLL
                     LVPGWRDLIGRPLEEIVARQWAAATAVLLDDVASLPREAVVTVRYDDLVARPDAEARR
                     LCAAAGLDWDRPLARLPLSRHTLTPPDPDKWRRHEAEINRVLPVVEEVRRRAEAFVAG
                     "
     gene            1121..3361
                     /locus_tag="VLM17_07025"
     CDS             1121..3361
                     /locus_tag="VLM17_07025"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HSR65334.1"
                     /translation="MLNQHRNLVVPESDTLRVGDCIVDVPRREVACGGESRRITVKAM
                     QVLLVLVAHAHKVVSREALLEWVWADTLPTDDVLTQAVTQLRKAFADDRESPRYLETI
                     AKGGYRLIAAVEWQPPPPVPRPAAPDTQIAPASAASASMASSAGIAPVRRTIGYRVGW
                     TLLALAAVAAVGWYVAAPRQAAAPAAARTAAPVAAVPATMAAAPFQRITSAPGSEMWP
                     SLSPDGAQVVYSAWTPEGDEGALMVQTTAPVPPRALTSPARGVLDTMPAWSPNGREIL
                     FERLGPGGRCGLYLIPASGGEPRHVSDCRRNELGQYSWHPDGRHLIGSKLGTGAGDDG
                     ALQVLDLASGTWTPLAYRKAAGDMDLAPVYSPDGKWIVFRRNVSLSDLWRVPAAGGAP
                     ERLTDLRTNFFGHAWAPDGRSLVLSRYQDAGLQLSRLDLADHSLRDLGVANAAAPAIA
                     ARAPSLAFVVGNTVAAMYRLDLSRPQAKPEPMFPSTGLDLMPSIAPDGRQLAWMSNRS
                     GRLGLWWARLDQPDSLRLIDGLVPVPRYAAAWSADGGRMLVVGRDGTRLALYEVRPDS
                     ARVQRLPVPAGEPVQADYLPAPDRLLVVADRGAGRLGVTLYDRSRTPWQALAQLDDVA
                     MARYDAGADRILFTRPATPGLWQADLELAGVRKVATGPEVGGGRRLGLLPGGPWLADS
                     DSQARCALRWASLATPRGALPCRHAGGDGAMLSAISLDARRGQLYYALERDASADIGW
                     MPLPAH"
     gene            3408..3578
                     /locus_tag="VLM17_07030"
     CDS             3408..3578
                     /locus_tag="VLM17_07030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65335.1"
                     /translation="MNRSGQVVRAGVSFGSALAIAISWTTNKSLFWAIVHGLLSWLYV
                     VYFALRYRLHVF"
     gene            3722..>3975
                     /locus_tag="VLM17_07035"
     CDS             3722..>3975
                     /locus_tag="VLM17_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HSR65336.1"
                     /translation="MLQCLRVDRGAIEEGVGRADALPRARLAFLARGARLGVGAPQAT
                     FWLVVRGSARVQAREGRFLLRAGEWLAFGRDAEPLLAADRR"
BASE COUNT          456 a         1481 c         1482 g          556 t
ORIGIN      
        1 cgatcgtggt ggcgaacctg ctggcccggg aggcgcagga agccgccgcg cccgcgcgac
       61 cgcggccgcc gcagcggccc ggcttcggcg gcatgaacgt gcagttctcc ttcgggtcgg
      121 cgccgccacg gccggcgacc cgggccgcgc cggtgcccgc cacccgctcg cagggcgcgg
      181 cccgcttcga gcggccggtg atcctgctca gcgcgccgcg gtccgggtcg acgctgctgt
      241 tcgaaacgct ttcgcaggct cccgggttgc tgaccatcgg ccacgaaagc caccgcacca
      301 tcgagggctt gccggggctc catcccgccg cgcgcggtta cggatccaac cggctcaccg
      361 ccgaggacgc ttccgacgag atcgcggagg cgttgcggtc ggccttcgcc ggcgcattgc
      421 gcgatcgcga cggccggccg ccgctgccgg gccggccggt gcgcctgctc gagaagacgc
      481 cgaagaacat cctgcgggtg ccgttcctgc ggcgggtttt ccccgatgcg ctgttcgtct
      541 atctgtatcg cgagccgcgc ccggtcctgg cgagcatgat cgaggcctgg cagtcgggcc
      601 gtttccgcac ctacgcggag ctgccgggct gggtcggccc gccgtggtcc ctgctgctgg
      661 tgcccggctg gcgggacctc atcggcaggc cgctggagga gatcgtcgcg cggcaatggg
      721 ccgccgccac cgccgtcctg ctcgacgacg tggcctccct gcctcgcgag gcggtcgtca
      781 ccgtgcgcta cgacgacctc gtcgcgcggc ccgatgccga ggcgcgacgg ttgtgcgcgg
      841 cggccggcct ggactgggac cggccgctgg ccaggttgcc gctgtcgcgc cacacgctca
      901 cgccgccgga tcccgacaag tggcggcgcc acgaggcgga gatcaaccgc gtcctgccgg
      961 tcgtcgaaga agtgcggcgc cgcgcggagg cgttcgtggc cggttgaagg cgccatgccc
     1021 gcggcgtcgg cctcgcgccg gcgcccgggc gaaagccgtt gccggcatcg gctagcatgg
     1081 cgcatcggat gcggtgtcgg attggggaat cgggcggcac atgttgaacc agcaccgcaa
     1141 cctggtcgtg cccgagagcg acacgctgcg cgtgggcgac tgcatcgtcg acgtgccgcg
     1201 gcgcgaggtc gcgtgcggcg gcgagtcgcg gcgcatcacc gtcaaggcga tgcaggtgct
     1261 gctggtgctg gtcgcgcacg cgcacaaggt cgtaagccgc gaggcgctgc tcgaatgggt
     1321 gtgggccgac acgctgccca ccgacgacgt gctgacccag gcggtcaccc agctgcgcaa
     1381 ggcgttcgcc gacgatcgcg agtcgccgcg ctacctggag acgatcgcca agggcggcta
     1441 tcggctcatc gcggcggtcg aatggcagcc gccgccgccc gtgccgaggc cggccgcgcc
     1501 ggacacgcag atcgcgccgg cgagcgcggc atccgccagc atggcatcca gcgcgggcat
     1561 cgcgccggtg cggcggacga tcggctatcg cgtcggctgg acgctgctcg cgcttgccgc
     1621 ggtcgcggcc gtcggctggt acgtggcggc gccccggcag gcggccgcgc ccgccgccgc
     1681 gcgcactgcg gcgccggtcg ccgccgtgcc cgccacgatg gccgcggctc ccttccagcg
     1741 catcacctcc gcgcccggca gcgagatgtg gccgagcctg tcgcccgacg gcgcgcaggt
     1801 ggtctacagc gcctggacgc cggaaggcga cgaaggcgcg ctgatggtgc agaccaccgc
     1861 gccggtgcca ccgcgcgcgc tgacctcgcc ggcgcggggc gtgctggaca cgatgcccgc
     1921 gtggtcgccg aacggacgcg agatcttgtt cgagcggctc ggtccgggcg ggcgctgcgg
     1981 gttgtacctg attcccgcca gcggcggcga gccgcgccac gtgtccgact gcaggcgcaa
     2041 cgagctcggc cagtacagct ggcatccgga tggacgccat ctgatcggca gcaagctcgg
     2101 cacgggcgcc ggcgacgacg gcgcgctgca ggtgctcgac ctcgccagcg ggacgtggac
     2161 gccgctggcc tatcgcaagg ccgcgggcga catggacctc gcgccggtgt actcgccgga
     2221 tggcaagtgg atcgtgttcc gccgcaacgt gtcgctgtcc gacctgtggc gggtgccggc
     2281 ggcgggcggc gcgccggagc ggctgaccga cctgcgcacc aatttcttcg gccatgcctg
     2341 ggcgccggac gggcgctcgc tggtgctctc gcgctaccag gacgccggac tgcagctgtc
     2401 gcgcctggac ctcgccgacc acagcctgcg cgacctcggc gtcgccaacg cggcggcgcc
     2461 ggccatcgcc gcgcgcgcgc cgtcgctggc gttcgtggtc ggcaacacgg tggcggcgat
     2521 gtaccggctg gacctgtcgc ggccgcaggc gaagccggaa ccgatgttcc cgtcgaccgg
     2581 gctcgacctg atgccgtcga tcgcgcccga cgggcgccag ctcgcgtgga tgtccaaccg
     2641 gtccggtcgc ctcggcctgt ggtgggcacg gctggaccag ccggattcgc tgcggctgat
     2701 cgacggcctg gtgccagtgc cgcgctacgc cgccgcgtgg tcggccgacg gcggccgcat
     2761 gctggtggtc ggccgcgacg gcacgcggct ggccctgtac gaggtgcgcc ccgacagcgc
     2821 ccgtgtccag cgcctgccgg tcccggccgg cgagccggtg caggccgatt acctgcccgc
     2881 gcccgaccgt ttgctggtgg tggccgaccg cggtgccggg cgcctgggcg tcaccctgta
     2941 cgaccgctcc cgcaccccat ggcaggcgct tgcgcagctg gacgacgtgg cgatggcgcg
     3001 ctacgacgcc ggcgccgacc ggatcctgtt cacccgcccg gccacccccg ggctgtggca
     3061 ggccgacctg gagctcgccg gcgtccgcaa ggtcgccacc ggtccggagg tcggcggggg
     3121 ccgtcgcctc ggcctccttc ccggcggccc gtggctggcc gacagcgaca gccaggcccg
     3181 ctgcgcgctg cgctgggcgt cgctggcgac gccgcgtggc gcgctgccct gccgccacgc
     3241 gggcggcgac ggcgcgatgc tcagcgcgat cagcctggac gcacggcgcg ggcagctcta
     3301 ctacgcgctc gaacgggacg ccagcgccga catcggctgg atgccgctgc ccgcgcactg
     3361 accttccgag gagcatccgc catgtcccat ccgaccggag caatgccatg aaccgtagcg
     3421 gccaggtggt gcgggccggc gtcagcttcg gcagcgcgct cgccatcgcc atctcgtgga
     3481 cgaccaacaa gtcgctgttc tgggcgatcg tgcacgggct gctgtcgtgg ctgtacgtcg
     3541 tgtacttcgc cctgcgctat cgcctgcacg tgttctagcc ggcatcgcgg ccgccgaaac
     3601 cgggccgcca gccctcgcgg cggcgccttt ccgcaagatt tcggaaaagc tgcggcgctt
     3661 tttcctgccg cgccgcgccc ggtgggcgat acctgcggcc gtgtcccgac cggatccggc
     3721 catgctccag tgcctgcgtg tcgaccgtgg cgccatcgag gagggcgtcg gccgtgccga
     3781 tgccctcccg cgtgcccgcc ttgccttcct cgcccgcggt gcccgcctgg gcgtcggcgc
     3841 gccgcaggcg accttctggc tggtggtgcg cggcagcgcc cgggtgcagg cgcgcgaagg
     3901 gcgcttcctg ctccgcgcgg gcgagtggct cgcgttcggg cgcgacgccg agccgctgct
     3961 cgccgccgac cgccg
//
LOCUS       DATIQC010000332         3255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_445745, whole genome shotgun sequence.
ACCESSION   DATIQC010000332 DATIQC010000000
VERSION     DATIQC010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445745"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..784)
                     /gene="cysW"
                     /locus_tag="VLM17_07040"
     CDS             complement(<1..784)
                     /gene="cysW"
                     /locus_tag="VLM17_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HSR65337.1"
                     /translation="MGEAHDRRDPLEPPPWLRWLLITSAVLVLVLLLVMPLAMVLGAA
                     FAKGLEVWWAAVREPDARAALRLTLFTAAIVIPLNAVFGVLTAWAVTRFEFPGKRVLL
                     SLIDLPFAVSPVVAGLCLVLLFGTHGWFAGWLAAHDLKILFARPAIVLATLFITFPFV
                     ARELIPLMQQQGADEELSARSLGAGALTLFLRVTLPNIKWGLLYGVLLCSARAMGEFG
                     AVSVVSGHIRGLTNTLPLHIEILYNEFNATAAFAVASLLAGLA"
     gene            complement(777..1640)
                     /gene="cysT"
                     /locus_tag="VLM17_07045"
     CDS             complement(777..1640)
                     /gene="cysT"
                     /locus_tag="VLM17_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HSR65338.1"
                     /translation="MSAIPLPFPALARRQRHPLPGFGLSLGLGLAWLGLVVLLPLAAL
                     AVRSVALGPRGWLHAIHDPRVQAALTLSFGASLLAAVISSLAGGLVAWVVVRYRFPGR
                     RLLDALVDLPFALPTAVAGIALTALYSANGWLGRWLEPHGLKVAYAPAGIVVALVFIG
                     LPFAVRTLQPGLETLGREPEVAAASLGAGRFTSLRRVVLPELLPALLTGFALAFARAI
                     GEYGSVIFIAGNLPYKTEIAPLLITIRLEEYDYDGAIAIAALLLVASFACLLAVNLVA
                     ARVNKGSRRHG"
     gene            complement(1652..2674)
                     /locus_tag="VLM17_07050"
     CDS             complement(1652..2674)
                     /locus_tag="VLM17_07050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HSR65339.1"
                     /translation="MKRSLAFFLGSALLAAATLLASTAHAKDAELLNVSYDPTRELYA
                     DVNRAFAAQWKQQTGQALTNRASHGGSGKQARAVIDGLEADVVTLALAADIDAIADKG
                     KLLPANWQSRLPHNSAPYTSTIVLLVRKGNTKGIHDWGDLVKPGVAVITPNPKTSGGA
                     RWNYLAAWTWASQQYHDGDKVLDYMSKLFHNVPVLDTGARGATTTFVERGIGDVLIAW
                     ENEALLTVNDPATRGQFEIVMPSVSIKAEPSVAWVDRNVARHGTAKQAQAYLRFLYTP
                     QGQQLIARHYYRPAEPDAVPAALRARFPAVKLVTIDDAFGGWKKAQATHFDDGGLFDR
                     IYRPGR"
     gene            complement(2692..>3255)
                     /locus_tag="VLM17_07055"
     CDS             complement(2692..>3255)
                     /locus_tag="VLM17_07055"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HSR65340.1"
                     /translation="HGSGSAFLPRYRTPGQVTFFGYRSNTTADGALERWSPQAWYYRG
                     RFGLLGEYIVSRQDVTAGTGERAMLQNRAWQLSGGMVLTGEDASYQGVVRPDHPFTLG
                     GPGWGALELVARYGRLEIDDAAFPLFADPTQAMAAAHGWGLGLNWYLTRNLKLTANYT
                     RTAFDAAPGAAAREDEQVVFTRAQFSF"
BASE COUNT          530 a         1112 c         1185 g          428 t
ORIGIN      
        1 gtgcgagccc tgcaagcagc gacgcaaccg cgaaggccgc ggtcgcgttg aattcgttgt
       61 agaggatttc gatgtgcagc ggcagcgtgt tggtcaggcc gcggatgtgg ccggagacca
      121 cggacaccgc gccgaactcg cccatcgcgc gcgcactgca cagcaacacg ccgtacaaca
      181 ggccccactt gatgttcggc agggtgacgc gcaggaacaa cgtcaaggcg cccgcgccca
      241 gcgagcgcgc cgacagctcc tcgtcggcgc cctgctgttg catcagcggg atgagctcgc
      301 gcgcgacgaa cgggaacgtg atgaacaacg tcgccagcac gatcgccggc cgcgcgaaca
      361 ggatcttcag atcgtgcgcg gcgagccagc cggcgaacca gccgtgcgtg ccgaacagga
      421 gcaccaggca cagccccgcc accaccggcg acaccgcgaa cggcaggtcg atgagcgaca
      481 gcagcacgcg cttgcccggg aactcgaacc gcgtcaccgc ccatgccgtc agcacgccga
      541 acaccgcgtt gagcgggatc acgatcgccg cggtgaacag cgtcagtcgc agcgccgcgc
      601 gggcgtcggg ttcgcgcacc gcggcccacc agacctccag gcccttggcg aacgccgcgc
      661 cgagcaccat cgccagcggc atcaccagca gcagcaccag caccagcacc gcggaggtga
      721 tcagcagcca gcgcaaccag ggcggtggct cgagcggatc gcggcggtcg tgcgcctcac
      781 ccatggcggc ggcttccctt gttcacgcgc gcggcgacca ggttgaccgc gagcaggcag
      841 gcgaaggagg cgaccagcag cagcgcggcg atcgcgatcg cgccgtcgta gtcgtattcc
      901 tccaggcgga tggtgatcag caagggcgcg atctcggtct tgtagggcag gttgccggcg
      961 atgaagatca ccgagccgta ttcgccgatg gcccgcgcga aggcgagcgc gaagccggtc
     1021 agcagcgccg gcagcagttc cggcaacacc acgcggcgca ggctcgtgaa gcggccggcg
     1081 cccagcgagg cggccgctac ctccggctcg cggccgagcg tttccagccc cggttgcaac
     1141 gtgcggaccg cgaacggcag gccgatgaag accagtgcga ccacgatgcc ggccggcgcg
     1201 taggcgacct tcagcccgtg cggttccagc cagcggccga gccagccgtt ggccgagtac
     1261 agcgcggtga gggcgatgcc ggcgacggcg gtcggcagtg cgaacggcag gtccaccagc
     1321 gcatccagca ggcgccgccc gggaaagcgg tagcgcacca ccacccaggc gacgagcccg
     1381 ccggccagcg aggagatcac cgccgccagc agcgacgcgc cgaagctcag cgtcagcgcg
     1441 gcctgcacgc gcgggtcgtg gatcgcgtgc agccagccgc gcgggccgag cgccacgctg
     1501 cgcaccgcca gggccgccag cggcagcagc acgaccaggc cgagccaggc caggcccagc
     1561 ccgaggctga gcccgaaccc cggcagcgga tggcgctggc gccgggccag cgccgggaat
     1621 ggcagtggaa tggcggacat gcgatgcggc ctcagcgccc ggggcggtag atgcggtcga
     1681 acaggccgcc gtcatcgaag tgggtggcct gcgccttctt ccagccgccg aacgcgtcgt
     1741 cgatggtgac cagcttcacc gccgggaacc gtgcgcgcag cgccgccggc accgcatcgg
     1801 gctcggccgg gcggtagtag tggcgcgcga tcagttgctg gccctgcggg gtgtagagga
     1861 agcgcaggta ggcctgcgcc tgcttcgcgg tgccgtgccg ggccacgttc ctgtccaccc
     1921 aagcgaccga cggctcggcc ttgatgctca ccgacggcat cacgatctcg aactgcccgc
     1981 gcgtggcggg atcgttaacg gtgagcagcg cctcgttctc ccaggcgatg agcacgtcgc
     2041 cgatgccacg ctcgacgaag gtggtggtcg cgccgcgcgc gccggtgtcg agcaccggca
     2101 cgttgtggaa cagcttcgac atgtagtcga gcaccttgtc gccgtcgtgg tactgctgcg
     2161 aggcccaggt ccaggccgcc aggtagttcc agcgcgcacc gcccgatgtc ttcgggttcg
     2221 gcgtgatcac cgcgacgccg ggcttcacga ggtcgcccca gtcatggatg cccttcgtat
     2281 tgcccttgcg caccagcagg acgatcgtcg aggtgtaggg cgcgctgttg tgcggcaggc
     2341 gcgactgcca gttcgccggc aacagcttgc ctttgtcggc gatggcatcg atgtcggcgg
     2401 cgagcgcgag ggtgacgacg tcggcctcga gcccatcgat caccgcgcgc gcctgcttgc
     2461 cggaaccgcc atgcgaggcg cggttggtca gcgcctgtcc ggtctgctgc ttccactgcg
     2521 cggcgaaggc gcggttgacg tccgcataga gctcgcgggt cgggtcgtag gacacgttga
     2581 ggagttcggc gtccttggca tgcgcggtgg acgccagcag cgtcgcggcg gccagcagcg
     2641 cgctgccgag gaagaaggcg agggaacgtt tcatggggag ggcctcgaag gtcagaagga
     2701 gaactgcgcg cgggtgaaca ccacctgctc gtcctcgcgc gccgcggcgc cgggggcggc
     2761 gtcgaaggcg gtgcgcgtgt agttcgcggt cagcttcagg ttgcgggtca ggtaccagtt
     2821 caggccgagg ccccagccgt gcgcggcggc catcgcctgc gtcgggtcgg cgaacaacgg
     2881 aaaggccgca tcgtcgattt ccaggcgtcc gtagcgggcg acgagttcga gggcgcccca
     2941 gcctgggccg ccgagcgtaa acgggtggtc aggacggacc acgccctggt agctggcgtc
     3001 ctccccggtc aggaccatgc cgccgctgag ctgccatgca cggttctgga gcatggcgcg
     3061 ctcgccggtg ccggcggtga cgtcctgccg cgacacgatg tattcgccga gcagcccgaa
     3121 gcggccgcgg tagtaccagg cctgcggcga ccagcgttcc agggcgccgt cggcagtggt
     3181 gttgctgcgg tagccgaaga acgtgacctg gccgggggtg cggtaacgcg gcaggaacgc
     3241 actgccgctt ccgtg
//
LOCUS       DATIQC010000333         3574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_410731, whole genome shotgun sequence.
ACCESSION   DATIQC010000333 DATIQC010000000
VERSION     DATIQC010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410731"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /gene="flgB"
                     /locus_tag="VLM17_07060"
     CDS             <1..250
                     /gene="flgB"
                     /locus_tag="VLM17_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003482950.1"
                     /note="with FlgF and C makes up the proximal portion of
                     the flagellar basal body rod; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HSR65341.1"
                     /translation="DFNAALGAALNPALAAAGNDPVDAAVAGARYARASTQPSADGNT
                     VESEREKASFAQAALEYRASLSFIESRVRTMLTAITGE"
     gene            279..686
                     /gene="flgC"
                     /locus_tag="VLM17_07065"
     CDS             279..686
                     /gene="flgC"
                     /locus_tag="VLM17_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004425624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HSR65342.1"
                     /translation="MSNLPIFDVAGSAMTAQSVRLSTVASNLANSDSVAGSPDAVYKA
                     KQPVFSADPVAGDPSLAGVKVTSVQESTAAPLKRYEPTHPLADAQGYVYAPDVDPVAQ
                     MVDMISASRSYQADVEVLNTAKELAVATLGLGK"
     gene            690..1355
                     /locus_tag="VLM17_07070"
     CDS             690..1355
                     /locus_tag="VLM17_07070"
                     /inference="COORDINATES: protein motif:HMM:NF025230.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HSR65343.1"
                     /translation="MTTVTGTTSNDYASYGLGLDAGSKKASLGQADFLRLMTEQLKNQ
                     DPLKPLDNAQFLGQLAQFSTVQGIDQMNSAMGAMASVMENDQALRAAALVGHEALVDA
                     SSLGLAAGKGVNGEIVATSAGPMQVEVVDGSGQVVRRMTVDAPSAGNVAFSWDGRDDN
                     GDTAPAGTYTVRASAGSGEDAQALAVRVAAHIDSVSIEASGLVLNLAGMGSVPLSTVR
                     RIG"
     gene            1393..2613
                     /gene="flgE"
                     /locus_tag="VLM17_07075"
     CDS             1393..2613
                     /gene="flgE"
                     /locus_tag="VLM17_07075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HSR65344.1"
                     /translation="MSMRIALSGMNAATADLNVTSNNIANANTTGFKESRAEFGDVFA
                     ASAFGLSKNAIGAGVRLQAVAQQFGQGNIDFTGKNLDLAINGQGFFTLSDNGSLVYSR
                     AGNFGADKDGYVVNPSGQRLQVYVPNAAGNGFDTGRLSDLQLSTGDSAPSATANVTVQ
                     SNLPANAGAPAVSPFDPTDPNTYNRTTSLTVYDSLGAAHSQSLYFVKTANPNEWQVYS
                     YIDGTAVGGAQTLQYSPTGTLASPSPGQIALPAYTPATGAAAMNITLDLGNSTQYGDT
                     FSLSSLTQDGYTTGRLTGIEVGGDGVVQARYTNGVSTPLGQVAMTNFANPQGLQPLGN
                     NAWSETSESGQPRRGQAGTSEFGAVQGGALESSNVDLTAQLVNMITAQRNFQANAQMI
                     QTDDQITQTVINIR"
     gene            2660..3406
                     /locus_tag="VLM17_07080"
     CDS             2660..3406
                     /locus_tag="VLM17_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgF"
                     /protein_id="HSR65345.1"
                     /translation="MTDRALYIAMTGASANLQAQASVSNNLANADTVGFQATLDGTVA
                     APVAGAGLASRVAVEHRTLGVSGTAGALLNTGGELDVALHADRWLAVQASDGSTAYTR
                     AGNLRLTPNGLLTTASGLPVLGADGAPLAIPPYQTLHIGGDGTISIVPQGQPASTLTE
                     GGRLGVVQGSARDFVRGDDGLMRAAPGTTPAPASGASLTAGALEGSNVDATGMLVSMI
                     QLARQFETQVRLLHTEDQNAQTANSLLSSR"
BASE COUNT          598 a         1385 c         1148 g          443 t
ORIGIN      
        1 cgacttcaac gccgcgctcg gcgccgcgct gaacccggcg ctggccgccg cgggcaacga
       61 tccggtcgac gccgccgtcg ccggcgcccg ctacgcgcgc gcctccaccc agcccagcgc
      121 cgacggcaac acggtcgaga gcgagcgcga gaaggccagc ttcgcccagg ccgcgctcga
      181 ataccgggcc tcgctgtcct tcatcgagtc gcgcgtgcgc acgatgctga ccgcgatcac
      241 cggcgaatag gccgcgggcg aacaagcgag gacacgccat gagcaacctc cccatcttcg
      301 acgtcgccgg cagcgcgatg accgcgcagt cggtgcgcct gagcaccgtc gccagcaacc
      361 tcgccaacag cgacagcgtc gccggctcgc cggacgcggt ctacaaggcg aagcagccgg
      421 tgttctccgc cgatccggtc gccggcgacc cgtcgctcgc cggcgtcaag gtgacgtcgg
      481 tgcaggaaag cacggccgcg ccgctcaagc gctacgagcc gacccatccg ctcgccgacg
      541 cgcagggcta cgtgtacgcg ccggacgtcg atccggtcgc gcagatggtc gacatgattt
      601 ccgcctcgcg cagctaccag gccgacgtcg aggtgctcaa caccgccaag gagctcgccg
      661 tcgccaccct cggcctcggc aaataagcca tgaccaccgt caccggcacc accagcaacg
      721 actacgccag ctacggcctc ggcctggacg ccggcagcaa gaaggcctcg ctcggccagg
      781 ccgacttcct gcgcctgatg accgagcagc tgaagaacca ggatccgctc aagccgctcg
      841 acaacgccca gttcctcggc cagctcgcgc agttctccac cgtgcagggc atcgaccaga
      901 tgaactccgc gatgggcgcg atggcgagcg tgatggagaa cgaccaggcg ctgcgcgccg
      961 ccgcgctggt cgggcacgag gcgctggtcg acgcgtcctc gctcggcctc gccgccggca
     1021 agggcgtgaa cggcgagatc gtcgccacgt ccgccggccc gatgcaggtg gaagtggtgg
     1081 acggcagcgg gcaggtggtg cgccgcatga ccgtggacgc gccctccgcc ggcaacgtcg
     1141 ccttcagctg ggacggccgc gacgacaacg gcgacaccgc gcccgccggc acctacaccg
     1201 tgcgcgccag cgccggcagc ggcgaggacg cgcaggcact ggccgtgcgc gtcgccgcgc
     1261 acatcgattc cgtctcgatc gaggcctcgg gcctcgtcct caacctcgcg gggatgggca
     1321 gcgtgccgct gtccaccgtc cgccgcatcg gctgaccgcc gctttcgccc agtacgccac
     1381 cggagcgcca ccatgagcat gcgcatcgcc ctcagcggca tgaacgccgc caccgccgac
     1441 ctcaacgtca cctccaacaa catcgccaac gcgaacacca ccggcttcaa ggagtcgcgc
     1501 gcggagttcg gcgacgtgtt cgcggcctcg gcctttggcc tgtcgaagaa cgcgatcggc
     1561 gccggcgtgc gcctgcaggc ggtggcgcag cagttcggcc agggcaacat cgacttcacc
     1621 ggcaagaacc tcgacctcgc gatcaacggc cagggcttct tcaccctgtc cgacaacggc
     1681 tcgctggtgt attcgcgcgc cggcaacttc ggcgccgaca aggacggcta cgtggtcaac
     1741 ccgtccggcc agcgcctgca ggtctacgtg ccgaacgcgg cgggcaacgg cttcgacacc
     1801 ggccgcctgt ccgacctgca gctgtccacc ggcgattccg cgccgagcgc caccgccaac
     1861 gtcaccgtgc agagcaacct gccggcgaac gcgggcgcgc cggcggtctc gccgttcgat
     1921 cccaccgatc cgaacaccta caaccgcacc acctcgctga ccgtgtacga ctcgctcggc
     1981 gccgcgcaca gccagtcgct gtacttcgtc aagaccgcca acccgaacga gtggcaggtc
     2041 tacagctaca tcgacggcac cgcggtcggc ggcgcgcaga ccctgcagta ttcgccgacc
     2101 ggcaccctcg cctcgccctc gccgggccag atcgcgctgc cggcctacac cccggcgacg
     2161 ggcgcggcgg cgatgaacat caccctcgac ctcggcaact ccacccagta cggcgacacc
     2221 ttcagcctct cgtcgctgac ccaggacggc tacaccaccg gccgcctgac cggcatcgag
     2281 gtcggcggcg acggcgtggt gcaggcgcgc tacaccaacg gcgtgtcgac gccgctggga
     2341 caggtggcga tgaccaactt cgccaatccg cagggcctgc agccgctggg caacaacgcc
     2401 tggtccgaga cctccgaatc cggccagccg cgccgcggcc aggcgggcac gtcggaattc
     2461 ggcgcggtgc agggcggcgc gctggaatcc tccaacgtcg acctcaccgc gcagctggtg
     2521 aacatgatca ccgcgcagcg caacttccag gccaacgcgc agatgatcca gaccgacgac
     2581 cagatcacgc agacggtgat caacatccgc tgatgcatcg actcccgctc ccgcacgcgg
     2641 ggagtgagaa gaggacgcca tgaccgaccg tgcgctctac atcgcgatga ccggcgccag
     2701 cgccaacctg caggcgcagg cgtcggtgtc gaacaacctc gcgaacgccg acacggtcgg
     2761 cttccaggcc acgctcgacg gcaccgtcgc cgcgccggtc gccggcgcgg gcctggcctc
     2821 gcgcgtcgcg gtcgagcacc gcacgctggg cgtcagcggc acggccggcg cgctgctgaa
     2881 caccggcggc gaactcgacg tcgccctgca cgcggaccgc tggctcgccg tgcaggccag
     2941 cgacggcagc accgcctaca cccgcgccgg caacctgcgg ctcaccccga acggcctgct
     3001 cacgaccgcg tcggggctgc cggtgctcgg cgccgacggc gcgccgctcg cgatcccgcc
     3061 gtaccagacg ctgcacatcg gcggcgacgg cacgatctcg atcgtgccgc agggccagcc
     3121 cgcctccacg ctcaccgagg gcggccggct cggcgtcgtg cagggatccg cgcgcgactt
     3181 cgtgcgtggc gacgacggcc tgatgcgcgc cgcgcccggc accacccccg cgcccgccag
     3241 cggcgcctcg ctcaccgccg gcgcgctcga gggcagcaac gtcgacgcca ccgggatgct
     3301 ggtgtcgatg atccagctcg cccgccagtt cgagacgcag gtacgcctct tgcataccga
     3361 agaccagaac gcgcagacgg cgaactcgct gctgtcgtcg cgctgatgga tgccccgttc
     3421 gtcctgggcc tgtcggagga cgaacggaac ggccgggagg ccgttcatgg gtcgatgctt
     3481 cgacaggccc agcactcacc acgaacggct gtctagctca cgccgaggaa acaccatgaa
     3541 ttccgccctc tggatcgcca agaccggcct cgat
//
LOCUS       DATIQC010000334         1895 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_374902, whole genome shotgun sequence.
ACCESSION   DATIQC010000334 DATIQC010000000
VERSION     DATIQC010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374902"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..541
                     /locus_tag="VLM17_07085"
     CDS             <1..541
                     /locus_tag="VLM17_07085"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR65346.1"
                     /translation="SDPDAAARVSLCAINLSAGALLDEGFVGFVAERLHRSSFPADRL
                     CFEITETSAMRDPNRAQRVIDDLRALGCRFALDDFGTGFCSFGHLRALDVDYIKIDGS
                     FVRDMETSPLAAEVVRSITRIAHMLHKRTIAEHTESESVRAALAALGVDYAQGFAIDR
                     PQPLAHYLAALAPPVVGTP"
     gene            complement(538..1683)
                     /locus_tag="VLM17_07090"
     CDS             complement(538..1683)
                     /locus_tag="VLM17_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017464098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HSR65347.1"
                     /translation="MRALTAVRTGSRPQGAPTPTPAARIALLGTGTVGRAVLARLADW
                     EGTTLGARLSLAYVANSREAVRATRGADGHDDASCSASAMHALPGCAALAPCASDLSR
                     VEEALDSAPTRIVIDATAREAVAGRHARWLAQGIHVVTACKLGQGAALARWRAIRAAS
                     AAGAACYGDSATVGAGLPLLRSLRELQAGGDRIHAVAGVLSGSLAWLFDQYDGMRPFS
                     ALVRQARAAGYTEPDPRDDLSGEDVRRKLLILARAAGAALEPDQVGVGSLVPPALAAL
                     PAAAVDTALPALDGALRARFATAWKEGARLRFVARLDLRGAVPLARVGLEALAAGDPL
                     AGGSGTDNRVAIWSDRYLRQPLVVQGPGAGAGVTAAALLDDALRIAG"
     gene            complement(1680..>1895)
                     /locus_tag="VLM17_07095"
     CDS             complement(1680..>1895)
                     /locus_tag="VLM17_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HSR65348.1"
                     /translation="ESLGGVESLVAHPATMTHAAMPPDARAAAGIGEGLLRLSVGIEH
                     AGDLVGDLAAALERGAGANDGGRRAAR"
BASE COUNT          229 a          752 c          697 g          217 t
ORIGIN      
        1 atcggatccc gacgccgcgg cgcgggtgtc gctgtgcgcg atcaacctgt cggccggcgc
       61 gctgctggac gagggcttcg tcggcttcgt cgccgaacgc ctgcaccgca gcagcttccc
      121 cgccgaccgg ctgtgcttcg agatcaccga aacctcggcg atgcgcgatc ccaaccgcgc
      181 gcagcgggtc atcgacgacc tgcgcgcgct cggctgccgc ttcgcgctcg acgacttcgg
      241 caccggcttc tgctcgttcg gccacctgcg cgcgctggac gtcgactaca tcaagatcga
      301 cggcagcttc gtgcgcgaca tggagacctc gccgctggcg gcggaagtcg tgcgctcgat
      361 cacccgcatc gcccacatgc tgcacaagcg cacgatcgcg gagcacaccg agagcgaatc
      421 ggtgcgcgcg gcgctggcgg cgctcggcgt cgactacgcg caggggttcg cgatcgaccg
      481 cccgcagccg ctggcgcact acctcgccgc gctggcgccg ccggtggtcg gcacccccta
      541 gccggcgatg cgcagcgcgt cgtccagcag cgcggccgcg gtgaccccgg cgccggcccc
      601 gggtccctgc accaccagcg gctggcgcag gtagcggtcg ctccagatcg cgacccggtt
      661 gtcggtgccg ctgccgccgg cgagcgggtc gcctgccgcc agcgcctcca ggccgacgcg
      721 cgcgagcggc acggccccgc gcaggtcgag ccgcgcgacg aaacgcagcc gcgcgccctc
      781 cttccatgcg gtggcgaagc gcgcccgcag cgcgccgtcg agcgcgggca gggcggtgtc
      841 cacggcggcg gccggcaacg cggcgagcgc gggcggcacc agcgatccga ccccgacctg
      901 gtccggctcc agcgccgcgc cggccgcgcg ggcgaggatc agcagcttgc gccgcacgtc
      961 ttcgccggac aggtcgtcgc gcggatcggg ctcggtataa cccgctgcgc gcgcctgccg
     1021 gacgagcgcc gagaacggcc gcatgccgtc gtactggtcg aacagccagg cgagcgagcc
     1081 cgacagcacg ccggcgacgg catggatgcg gtcgccgccc gcctgcagct cgcgcagcga
     1141 acgcagcagc ggcagccccg cgccgaccgt cgcgctgtcg ccgtagcacg cagcgcccgc
     1201 cgcgctggcg gcgcggatcg cgcgccagcg cgccagcgcc gcgccctggc cgagcttgca
     1261 ggcggtgacc acgtggatgc cctgcgccag ccatcgtgcg tgccggccgg cgaccgcctc
     1321 gcgggcggtc gcgtcgatca cgatgcgcgt cggcgcggaa tccaacgctt cttcgacccg
     1381 cgacaggtcg ctcgcgcacg gagccagcgc ggcgcaaccc ggcagcgcgt gcatggccga
     1441 cgcgctgcag gaggcgtcgt cgtgcccgtc ggcgccgcgg gtcgcccgca ccgcctcgcg
     1501 ggagttggcg acgtaggcca gcgacaggcg cgcacccagc gtcgtgccct cccagtccgc
     1561 gagccgggcc agcaccgcgc ggccgaccgt gccggtgccg agcagggcga tgcgtgccgc
     1621 cggcgtcggt gtcggcgcgc cctgcggccg ggacccggtc cgcacggcag tgagtgccct
     1681 catcgggccg cgcgccggcc gccgtcgttc gcgccggcgc cccgctccag cgcggcggcg
     1741 aggtcgccga cgaggtcgcc ggcgtgctcg atgcccaccg acagccgcag caggccctcc
     1801 ccgatgccgg cggcggcgcg cgcgtcgggc ggcatcgccg cgtgcgtcat cgtcgccgga
     1861 tgcgcgacca ggctttcgac gccgccgagc gattc
//
LOCUS       DATIQC010000335         2250 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_552462, whole genome shotgun sequence.
ACCESSION   DATIQC010000335 DATIQC010000000
VERSION     DATIQC010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552462"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VLM17_07100"
     CDS             <1..217
                     /locus_tag="VLM17_07100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65349.1"
                     /translation="QAWDYLDALDAGRGGDAAFAGFRDRAIFATRQLAKRQLTWLRGE
                     LDARWFDPQDGRAALEQALALFVRGGA"
     gene            457..735
                     /gene="hfq"
                     /locus_tag="VLM17_07105"
     CDS             457..735
                     /gene="hfq"
                     /locus_tag="VLM17_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003471569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HSR65350.1"
                     /translation="MSKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGTIESFDQFVV
                     LLRNTVSQMVYKHAISTVVPARNVRVGPGGGQVHAGEHGEAEAEDEAE"
     gene            906..2234
                     /gene="hflX"
                     /locus_tag="VLM17_07110"
     CDS             906..2234
                     /gene="hflX"
                     /locus_tag="VLM17_07110"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome rescue GTPase HflX"
                     /protein_id="HSR65351.1"
                     /translation="MFERSRKGENALLIQPHAGGPPDPGLLEEFGDLARSAGAAVAAL
                     ITAKIDRPNPATLVGSGKLEEVKAAADATGADLVLVNHPLTPVQERNLEKALERRVVD
                     RTGLILDIFAQRARSHEGKLQVELAQLKHMATRLVRGWTHLERQRGGSIGLRGPGETQ
                     LETDRRLLQKRVDQLQKRLEKVEVQRTQMRRARVRSELPRVALVGYTNAGKSTLFNAL
                     TGADAYAANLLFATLDPTVRRVALSGGSIVLADTVGFVRDLPHELVAAFRSTLAEARE
                     ADLLLHVIDAADPLREERIAQVDAVLEEIGAGGIPQLLVYNKIDRVDGARPRHDLPGD
                     DLDHGAAHGGTRERVWISARDGLGLDLLREALGQRLGLRRVAGEVQLPPGAGRLRARL
                     HELGAVLAEHHDEHGWTLSLDLAEADAARIASHAYGEPLRPLREGQGTPT"
BASE COUNT          314 a          836 c          815 g          285 t
ORIGIN      
        1 gcaggcgtgg gactacctcg acgcgctgga cgccgggcgg ggcggcgacg cggcgttcgc
       61 ggggttccgc gaccgcgcga tcttcgccac ccgccagctg gccaagcgcc agctcacctg
      121 gctgcgcggc gagctggatg cgcgctggtt cgacccgcag gacggacgcg ccgcgctgga
      181 acaggcgctt gcgttgttcg tgcgcggggg cgcctagccg cggagcaggc ggctccggcg
      241 tctgcagcgc aggcggcgat cgcgatgcgg ccggcaggcc gtcgatccgc gtcctgggct
      301 ggaaactgcg acgcgcgtcg cgcgtcatcg ccggtcccgg cgcccgactt gtgtaccatc
      361 gggccgttgc cgccgcgtgg ggagcgggtc gggtgatgcg gtgccggcgc aggtcgggcc
      421 ggacacacat aacaagatcc aagctgggga attctcatgt ccaaggggca atccttgcag
      481 gacccgttcc tgaacgcgct gcggcgcgag cgcgtgccgg tgtccatcta tctcgtcaac
      541 ggcatcaagc tgcagggcac catcgaatcg ttcgaccagt tcgtcgtcct gctgcgcaac
      601 acggtcagcc agatggtcta caagcatgcg atctcgaccg tcgtgccggc gcgcaacgtg
      661 cgcgtgggcc cgggcggggg gcaggtgcac gcgggcgagc acggcgaggc cgaggccgag
      721 gacgaagccg agtaagccct cgtcccgggc ggaccggccg ggaccgggag gctggtgagg
      781 ctctgcgccg cgggttttcc cgcgcatccg ctccggcgtg cttgaaccgc cggcgcgcgc
      841 ccccactcag ggggttcccc gacgcctttc cacgcccctc gcggggacgg agccacaatc
      901 cccgcatgtt cgaacgctcg cgcaagggcg aaaacgccct gctgatccag ccgcacgccg
      961 gcggcccgcc agatcccggc ctgctggagg agttcggcga cctcgcgcgg tcggccggcg
     1021 cggccgtcgc cgcgctgatc accgccaaga tcgaccggcc caatccggcc accctggtcg
     1081 gcagcggcaa gctggaggaa gtgaaggccg ccgccgatgc caccggcgcc gacctcgtcc
     1141 tcgtcaacca tccgctgacg ccggtgcagg agcgcaacct cgagaaggcg ctcgagcgcc
     1201 gcgtggtcga ccgcaccggc ctgatcctcg acatcttcgc ccagcgcgcg cgcagccacg
     1261 aaggcaagct gcaggtcgag ctcgcccagc tcaagcacat ggccacgcgc ctggtgcgcg
     1321 ggtggaccca cctggagcgc cagcgcggcg gttcgatcgg cctgcgcggg cccggcgaaa
     1381 cccagctcga gaccgaccgc cgcctgctgc agaagcgcgt cgaccagttg cagaagcgcc
     1441 tggagaaggt cgaggtgcag cgcacgcaga tgcgccgcgc gcgcgtgcgc agcgagctgc
     1501 cgcgcgtcgc cctggtcggc tacaccaacg ccggcaagtc gacgctgttc aacgcgctca
     1561 ccggcgccga cgcctacgcc gccaacctgc tgttcgccac cctcgacccg accgtgcggc
     1621 gggtcgcgct gtcgggcggc agcatcgtcc tggccgacac cgtcggcttc gtgcgcgacc
     1681 tgccgcacga gctcgtcgcc gcgttccgct cgaccctggc ggaggcgcgc gaggcggacc
     1741 tgctgctgca cgtgatcgac gccgccgacc cgctgcgcga ggagcgcatc gcccaggtcg
     1801 acgcggtgct ggaggagatc ggcgcgggcg ggatcccgca gctgctcgtc tacaacaaga
     1861 tcgaccgcgt cgacggcgcg cggccgcgcc acgacctgcc gggcgacgac ctcgaccatg
     1921 gcgccgccca cggcggcacc cgcgagcggg tctggatctc ggcgcgcgac ggccttggcc
     1981 tggacctgct gcgcgaggcg ctcggccagc gcctgggcct gcgccgggtc gccggcgagg
     2041 tgcagttgcc gccgggtgcc ggccgcctgc gcgcgcgcct gcacgaactc ggcgcggtgc
     2101 tcgccgagca ccacgacgag cacggctgga cgctcagcct cgacctcgcc gaggccgacg
     2161 ccgcgcgcat cgccagccat gcctacggcg agccgttgcg gccgttgcgt gaggggcagg
     2221 gcacccccac ctagaatcgg cggcgcgctc
//
LOCUS       DATIQC010000336         4712 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_57166, whole genome shotgun sequence.
ACCESSION   DATIQC010000336 DATIQC010000000
VERSION     DATIQC010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57166"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..1303)
                     /locus_tag="VLM17_07115"
     CDS             complement(140..1303)
                     /locus_tag="VLM17_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSR65352.1"
                     /translation="MALHPYDLYDVRSLLSEEERAVQDTVARFTDERVLPIIGDAFDQ
                     GRFPKELVGEIAELGLLGSSLPEQYGCAGLNGVSYGLICQELERGDSGIRSFVSVQSS
                     LCMYPIYAYGSEEQRQRWLPDMAAGKVIGCFGLTEAQGGSDPAAMKTNARRDGGDWIL
                     NGSKMWITNGNLADIAIVWAQTDEGIQGFVVEKGMPGFAAQEIKHKMSLRASVTSALY
                     FDNVRVPEANRLPNVKGLKGPLGCLTQARYGITWGPIGAAIACLDEALHYTKERVLFG
                     RPVAATQSAQIKMAEMARRITLAQLLSLQLGRLKDAGAMQPQQVSLAKWNNCRMAIDI
                     ARECRDLLGGAGITTEHAAIRHALNLESVITYEGTETVHQLVIGRELTGINAF"
     gene            complement(1429..2262)
                     /locus_tag="VLM17_07120"
     CDS             complement(1429..2262)
                     /locus_tag="VLM17_07120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HSR65353.1"
                     /translation="MKNNTLAIALASLLVGGVAVAAFEHARAPATPDNAVAAPIAPAP
                     AASLASGDSLAQDNSIAPGGTRLDYADVVNVQPVSEKQKLYAQVIGTEPVRETSTVST
                     PREVCNDVVVQEQAPRRDPHNVGGTVAGAVIGGLIGNQVGAGTGKKLATVGGAVGGAF
                     AGRAIEQRHAENQTVSRTEHQCHTESSTSQASRVVAYNVTYRNPDGTTGTMRMGSRPG
                     SRILVGSDRKAIGYDVTYRYEGSEHTVRMAQKPEGDRLPVVDGKVVTQVAAMDAGASR
                     Q"
     gene            2431..2619
                     /locus_tag="VLM17_07125"
     CDS             2431..2619
                     /locus_tag="VLM17_07125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6116 family protein"
                     /protein_id="HSR65354.1"
                     /translation="MPNPLVAPLLRWLGRLGYPRLFLATAVLFVLDMLIPDVIPFADE
                     LLLGLATLLLANWKKRKA"
     gene            2622..3470
                     /locus_tag="VLM17_07130"
     CDS             2622..3470
                     /locus_tag="VLM17_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HSR65355.1"
                     /translation="MESAPALVDTHCHLDDGEFDADRAAVLQRARDAGVMRIIVPAID
                     AANWPRLRAVCAAEAGLSAAYGLHPLYLPAHRPADLDALREWIARERPVAVGECGLDH
                     FVELDHDMQLGYFDAQLRTARDFDLPVIVHARRAVDAVIAAIRRVGGLRGVVHSFSGS
                     PQQAEQLWRLGFLLGIGGPVTYARANRLRGLVAAMPLEYLLLETDAPDQPDATHRGQR
                     NEPARLPRVLAAIASLRGETTTAIAAATTRNARQLFGLPPEPGGETTAESSAGDRWKP
                     AASRNA"
     gene            complement(3933..>4712)
                     /gene="dnaB"
                     /locus_tag="VLM17_07135"
     CDS             complement(3933..>4712)
                     /gene="dnaB"
                     /locus_tag="VLM17_07135"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006377195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HSR65356.1"
                     /translation="EFDEMTAGLQPTDLLILAARPAMGKTTLALNMAEYAAMKTKKAV
                     AVFSMEMSASQLALRLISSVGRVNATRLRTGQLEDEDWSRVSSAIRLLRETKVFIDDE
                     PALSPVKLAAKARRLNREHDLGLIVIDYLQLMQVPGNSENRATEISEISRSLKALAKE
                     LKVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADVIVFIYRDDYYNKENSPDK
                     GLAEVIIGKQRNGPTGSLKLKFFGEYTRFDNLSHDAVGAFE"
BASE COUNT          645 a         1637 c         1653 g          777 t
ORIGIN      
        1 cgcggcaggc gcaggatcag gcgttcggtt tcgaggcgga cttcgggcat cgccacgtcg
       61 atctccctgc gcacgccggc agcgcgccgg cgaaagttct ggattcccgc ccggtccaag
      121 gccggggcga cggcacggct cagaacgcgt tgatgccggt cagctcgcgg ccgatcacca
      181 gctggtgcac cgtttcggtg ccctcgtagg tgatcaccga ctcgaggttg agcgcgtggc
      241 ggatcgcggc gtgctcggtg gtgatgccgg cgccgccgag caggtcgcgg cattcgcgcg
      301 cgatgtcgat ggccatgcgg cagttgttcc acttcgccag cgacacctgc tgcggctgca
      361 tggcgccggc gtccttcagg cggccgagct gcaggctgag caactgggcg agcgtgatgc
      421 gccgcgccat ctcggccatc ttgatctgcg cgctctgggt cgcggccacc ggtcggccga
      481 acagcacgcg ctccttggtg tagtgcagcg cttcgtccag gcacgcgatg gcggcgccga
      541 tcgggcccca ggtgatgccg tagcgcgcct gcgtgaggca gccgagcggg cctttcaggc
      601 ccttcacgtt cggcaggcgg ttggcttcgg gcacgcgcac gttgtcgaag tacagcgcgc
      661 tggtgaccga ggcgcgcagc gacatcttgt gcttgatttc ctgcgcggcg aagcctggca
      721 tgcccttctc gaccacgaac ccctggatgc cctcgtcggt ctgcgcccac acgatggcga
      781 tgtcggccag gttgccgttg gtgatccaca tcttggagcc gttgaggatc cagtcgccgc
      841 catcgcgccg ggcattcgtc ttcatcgcgg cgggatccga gccaccctgc gcctcggtca
      901 ggccgaagca gccgatcacc ttgccggcgg ccatgtccgg cagccagcgt tggcgctgct
      961 cttccgaacc gtaggcgtag atcgggtaca tgcacagcga ggactgcacg ctgacgaagc
     1021 tgcggatgcc gctgtcgccg cgctcgagct cctggcagat caggccgtag ctgacgccgt
     1081 tgaggccggc gcagccgtac tgctccggca gcgaggagcc gagcagcccg agttcggcga
     1141 tctcgcccac caactccttc gggaagcggc cctggtcgaa ggcgtcgccg atgatcggca
     1201 gcacgcgctc gtcggtgaag cgggccacgg tgtcctgcac cgcgcgttct tcctcgctga
     1261 gcagggagcg tacgtcgtag aggtcgtagg gatgcagggc catggcggac cggatgggcg
     1321 gcggaagccc gccattctat cgacccgtgc tgcggtgcgg caccccgggc ccgcaaaagc
     1381 agagggcccg gaaaccgggc ccttgctggc ggaggcggtc agcgggtgtt actggcggct
     1441 ggcgccggcg tccatggcgg cgacctgggt gacgaccttg ccgtccacca ccggcaggcg
     1501 gtcgccttcc ggcttctgcg ccatgcgcac ggtgtgctcg ctgccctcgt agcgataggt
     1561 cacgtcgtag ccgatggcct tgcgatcgct gccgacgagg atccggctgc ccggccggct
     1621 gcccatgcgc atggtgccgg tggtgccgtc cggattgcgg taggtcacgt tgtaggcgac
     1681 cacgcgggag gcctgcgagg tcgacgactc ggtgtggcac tggtgttcgg tgcggctgac
     1741 cgtctggttt tcggcgtggc gctgttcgat cgcgcggccg gcgaaggcgc cgcccacggc
     1801 gccgccgacg gtcgccagct tcttgccggt gccggcgccc acctggttgc cgatcaggcc
     1861 gccgatcacc gcgccggcga cggtgccgcc gacgttgtgc ggatcgcgcc gcggcgcctg
     1921 ttcctgcacc accacgtcat tgcacacctc gcgcggtgtg gacacggtgc tggtctcgcg
     1981 caccggctcg gtgccgatca cctgcgcgta gagcttctgc ttctcgctca ccggctgcac
     2041 gttgacgaca tcggcataat cgagcctggt gccgcccggc gcgatgctgt tgtcctgggc
     2101 caggctgtcg ccgctggcga gcgatgcggc cggcgccggc gcgatgggcg cggccacggc
     2161 gttgtcgggc gtcgccggcg cgcgcgcgtg ctcgaacgcg gccaccgcca cgccaccgac
     2221 cagcagggaa gccaacgcga tcgcaagggt attgttcttc aacatgtcgc ctcctgggcg
     2281 cggacatccg cggcctctgc ggggcggatt gcagcattgc gatcctgaac acgaaccgat
     2341 tggcgacgac gattcccgcc cgccgctgaa tgccgcggcg cgcatcgcgc cgtgctagcg
     2401 tcacggcacc ccgatttcgt gatgacggtc atgccgaatc ccctcgtcgc cccgctgctg
     2461 cgctggctcg gccggctcgg ctacccgcgc ctgttcctgg cgaccgcagt gctgttcgtg
     2521 ctcgacatgc tgattcccga cgtcattccc ttcgccgacg aactgctgct cgggctcgcc
     2581 acgctactgc tcgccaactg gaagaagcgc aaggcgtgac ggtggaaagc gcccccgcgc
     2641 tggtcgacac ccactgccac ctcgacgacg gcgagttcga tgcggaccgg gcagccgtgc
     2701 tgcaacgcgc gcgcgatgcg ggcgtgatgc gcatcatcgt gccggcgatc gacgcagcga
     2761 actggccacg gctgcgcgcg gtgtgcgcgg cggaagccgg cctgtcggcc gcctacgggc
     2821 tgcatccgct gtacctgccc gcccatcgcc cggcagacct cgacgcgctg cgcgaatgga
     2881 tcgcccgcga gcgtccggtc gcggtcggcg aatgcggcct ggatcatttc gtcgagctcg
     2941 accacgacat gcagctgggc tatttcgacg cccagctgcg cactgcccgc gacttcgacc
     3001 tgccggtgat cgtgcatgcg cggcgcgcgg tggacgcggt gatcgcggcg atccgcaggg
     3061 tcggcggtct gcgcggggtg gtgcacagtt tctccggcag tccgcagcag gccgagcagc
     3121 tgtggcggct cggcttcctg ctcggcatcg gcgggccggt gacttacgcg cgcgccaacc
     3181 gactgcgggg gctggtcgcg gcgatgccgc tggaatacct gctgctggaa accgacgccc
     3241 ccgaccagcc ggacgccacc catcgcggcc agcgcaacga gcctgcacgc ctgccgcggg
     3301 tgctcgccgc catcgcctcc ctgcgcggcg agacaaccac cgcgatcgcc gccgccacca
     3361 cccgcaacgc gcggcagctg ttcggcctgc ccccggagcc cggaggcgag acgacggctg
     3421 aatcctctgc aggcgatcgc tggaagcctg ccgcatcgcg aaacgcgtga atggagagga
     3481 tggcggcgac cgcgatcacg atcagcagtt cggccaggga agcccgcctc gcggggcgcg
     3541 aatgcgcgac ctggcgccca cctcggcccc tcaaggtctc gcgccaagga aatccgccgc
     3601 atggcgccgc ctgcgggttc accgcaatcg aaccgagcgt gccctggagc cggcgaccac
     3661 cagctgcttc tcgatgagcg tcggccgacc gagccgaccg gcgcgccctt gccatccgcg
     3721 tccacgccat cgccgccgtc ggatttgccg ttgccgtaga ggtcgaagca aggcgacggc
     3781 agggtggcgc ctgacggcga cgacgcacgc ggcgcagcgc gtcggtcgag ggcccgatgg
     3841 ccccggccgg tgcgcgggcg atgtgcaggc gcgccggtcg gcgcgaacgg cagagcctcc
     3901 cccgtgggag gcggctcagc gccccggcgg cgtcattcga acgcgccgac cgcgtcgtgg
     3961 ctgaggttgt cgaagcgcgt gtattcgccg aagaacttca gcttcaacga gcccgtcggg
     4021 ccgttacgct gcttgccgat gatgacttcg gccaggccct tgtccggcga attttccttg
     4081 ttgtagtagt cgtcgcggta gatgaagacg atgacgtcgg cgtcctgctc gatggcgccg
     4141 gactcgcgaa ggtccgccat caccggacgc ttgtcggtgc gcgtctccag cgagcggttg
     4201 agctgcgaca gggcgatcac cggcaccttc agttccttcg ccagcgcctt cagcgaacgc
     4261 gagatctccg agatttccgt cgcgcggttc tcgctgttgc ccggcacctg catcagctgc
     4321 aggtagtcga tcacgatcag gccgaggtcg tgctcgcggt tgagtcggcg cgccttggcg
     4381 gcgagcttga ccggcgacag cgccggctcg tcgtcgatga agaccttggt ctcgcgcagc
     4441 aggcggatcg cgctgctgac gcggctccag tcctcgtcct cgagctggcc ggtgcgcagg
     4501 cgcgtggcgt tgacgcggcc cacggacgaa atcaggcgca gcgcgagctg gctggccgac
     4561 atttccatcg agaagaccgc cacggccttc ttggtcttca tggccgcgta ctcggccatg
     4621 ttgagcgcca gcgtcgtctt gcccatcgcg gggcgcgcgg cgaggatcag caggtcggtc
     4681 ggctgcaggc ccgcggtcat ctcgtcgaat tc
//
LOCUS       DATIQC010000337         2163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_339928, whole genome shotgun sequence.
ACCESSION   DATIQC010000337 DATIQC010000000
VERSION     DATIQC010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339928"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..274)
                     /locus_tag="VLM17_07140"
     CDS             complement(<1..274)
                     /locus_tag="VLM17_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003478127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HSR65357.1"
                     /translation="MKTRLQTSLGQQLVLTPQLRQAIHLLQLSGAELEAELAAAVESN
                     PLLDWEEPASLAAHPEPAPAGPTAEAGPANPEGDGEAADWDRDEAWS"
     gene            complement(314..1033)
                     /gene="lptB"
                     /locus_tag="VLM17_07145"
     CDS             complement(314..1033)
                     /gene="lptB"
                     /locus_tag="VLM17_07145"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005913374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HSR65358.1"
                     /translation="MLVAEGLRKRYRAREVVRDFGLSLDAGEVVGLLGPNGAGKTTCF
                     YMIVGLVPADAGRIVLDGRDITAEPMYTRAKLGVGYLPQEPSVFRKLSVADNLRLVLE
                     LRDDLDGKGRERELQALMEELQVAHVADQVGASLSGGERRRVEIARALAAKPRLMLLD
                     EPFAGVDPISVGEIQRIVRHLKNRGIGVLITDHNVRETLGICDRAYILSEGGVLAQGA
                     PDALLANPDVRRVYLGESFRL"
     gene            complement(1033..1560)
                     /gene="lptA"
                     /locus_tag="VLM17_07150"
     CDS             complement(1033..1560)
                     /gene="lptA"
                     /locus_tag="VLM17_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005415559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0001530 - lipopolysaccharide binding
                     [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HSR65359.1"
                     /translation="MSLRPASLTLLVVALALAGAAGARSTDRNQPMDTESDHQSGTFT
                     GNSVNVLSGNVHITQGSLDVRAGRAEITMRDGEAVRAVLTGAPVTLTQAMDDGTPITA
                     RASTVDYDLKGQTAVFTGNVQIQQPRGTMTGARVVYNLNTGNIESGGEGNGRVRMHIL
                     PKTAAPAPAADKGKP"
     gene            complement(1541..>2163)
                     /gene="lptC"
                     /locus_tag="VLM17_07155"
     CDS             complement(1541..>2163)
                     /gene="lptC"
                     /locus_tag="VLM17_07155"
                     /inference="COORDINATES: protein motif:HMM:TIGR04409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HSR65360.1"
                     /translation="LVTITTALFLVPLIGWALAVQNPETPYVVLLLLGALATGWSVWH
                     HRVKPTATGPGGGRSDYVLHDFELVALDDQGQESFTLRAPRLQQTPGARTMDLAQPLF
                     LLPDENGHYWQVRARTGWVSAGREHIRLTGAVLGTSPPEDPHKVALRTEQLNVFPDRH
                     HASTQAVVTVTQPGSILRGRGLEVALDTRRYEFLSQVRSHYVPTSR"
BASE COUNT          278 a          734 c          822 g          329 t
ORIGIN      
        1 acgaccaggc ctcgtcgcgg tcccagtcgg ccgcttcgcc gtcgccctcg gggttcgcgg
       61 gcccggcctc ggccgtcggc ccggcgggcg ccggctcggg gtgggcggcc agcgaggccg
      121 gttcctccca gtccagcagc ggattgcttt ccaccgcggc ggccagctcg gcctcgagtt
      181 ccgcgcccga cagctgcagc aggtggatcg cctggcgcag ctggggcgtg agcaccagtt
      241 gctggccgag cgaggtctgc aggcgggttt tcatgtcggg gcgggacgtc cttgcgggga
      301 cgacggccgc ggattacagg cggaaggatt cgcccaggta gacgcggcgc acgtccgggt
      361 tggccagcag cgcgtccgga gccccctgcg cgagcacgcc gccttcgctg aggatatacg
      421 cgcggtcgca aatgcccaag gtttcgcgca cgttgtggtc ggtgatcagc acgccgatgc
      481 cgcggttctt caggtggcgc acgatccgct ggatctcgcc caccgaaatc gggtcgacgc
      541 cggcgaacgg ctcgtccagc agcatcaacc gcggcttggc cgccagcgcg cgggcgatct
      601 cgacccgccg gcgctcgccg ccggacaggc tggcgccgac ctggtcggcg acgtgcgcga
      661 cctgcagctc ctccatcagc gcctgcagct cgcgctcgcg gcccttgccg tcgaggtcgt
      721 cgcgcagctc cagcaccagg cgcaggttgt cggccacgct gagcttgcgg aacaccgacg
      781 gttcctgcgg caggtagccg acgccgagct tggcgcgggt gtacatcggt tcggcggtga
      841 tgtcgcggcc atcgagcacg atgcggccgg catcggccgg caccaggccg acgatcatgt
      901 agaagcaggt ggtcttgccg gcgccgttgg ggccgagcag gccgaccact tcgccggcgt
      961 cgagggacag gccgaaatcg cgcaccacct cgcgcgcgcg atagcgcttg cgcaggccct
     1021 cggcgaccag catcagggct tgcccttgtc cgctgccggc gcaggcgcgg cggtcttggg
     1081 caggatgtgc atgcgcaccc ggccgttgcc ttcgccgccg ctctcgatgt tgcccgtgtt
     1141 gaggttgtag accacgcgcg cgccggtcat ggtgccgcgc ggctgctgga tctgcacgtt
     1201 gccggtgaag accgcggtct ggcccttgag gtcgtagtcg acggtggagg cgcgcgcggt
     1261 gatcggcgtg ccgtcgtcca tggcctgggt cagcgtgacc ggcgcgccgg tcagcacggc
     1321 gcgcaccgcc tcgccgtcgc gcatggtgat ctcggcgcgc ccggcgcgca cgtcgagcga
     1381 gccctgggtg atgtgcacgt tgccggacag cacgttcacg ctgttgccgg tgaaggtgcc
     1441 gctctggtgg tccgactcgg tgtccatcgg ctggttgcgg tcggtcgaac gcgcgcccgc
     1501 ggcgccggcg agggcgaggg cgacgaccag cagcgtcagg ctagcgggac gtagggacat
     1561 agtgggagcg cacctgcgaa aggaattcgt agcgccgcgt gtcgagggcg acctccaggc
     1621 cgcggccgcg cagtatagaa ccgggctggg tgacggtcac gacggcctgc gtgctggcgt
     1681 ggtggcggtc ggggaagacg ttcagctgct cggtacgcag cgccaccttg tgcgggtcct
     1741 ccggcgggct ggtgcccagc acggcgccgg tcaggcggat gtgttcgcgg ccggcgctga
     1801 cccagccggt cctggcgcgc acctgccagt agtggccgtt ctcgtcgggc agcaggaaca
     1861 gcggctgggc caggtccatc gtgcgcgcgc ccggcgtctg ctgcagccgc ggtgcgcgca
     1921 gggtgaacga ctcctgcccc tggtcgtcga gcgcgaccag ttcgaaatcg tgcagcacgt
     1981 agtccgagcg gcccccgccg gggccggtcg cggtcggctt gacgcggtgg tgccacaccg
     2041 accagccggt ggcgagcgcg ccgagcagca ggagcaccac gtagggggtc tcggggttct
     2101 gcaccgcgag ggcccagccg atcagcggga ccaggaacag ggccgtggtg atcgtgacca
     2161 gct
//
LOCUS       DATIQC010000338         3378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_199575, whole genome shotgun sequence.
ACCESSION   DATIQC010000338 DATIQC010000000
VERSION     DATIQC010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3378
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199575"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..481)
                     /locus_tag="VLM17_07160"
     CDS             complement(<1..481)
                     /locus_tag="VLM17_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HSR65361.1"
                     /translation="MNASVLSVGAERRDTTDLRADRRFRWLVTGAGLLVLAILLAAAL
                     SMAWGGRDAFRQFGIGFLWSQAWDPVGQQFGAGVPIYGTLATALIAMLIAVPVSFGIA
                     MFLTEIAPRPLRAPVGIAIELLAGIPSIIYGMWGLFVFVPFMARIEPGLSDTLGQIPL
                     "
     gene            complement(525..1604)
                     /gene="pstS"
                     /locus_tag="VLM17_07165"
     CDS             complement(525..1604)
                     /gene="pstS"
                     /locus_tag="VLM17_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005408791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HSR65362.1"
                     /translation="MNRILSPLACVGLATLLLAGCKGGNEPSAPSASTAPSAQGTAPV
                     AAEITGAGATFIYPLLSKWSDTYHTQTGHKINYQSIGSGGGIAQIKAGTVDFGSSDKP
                     LDSAELATAGLGQFPDAIGGVVPVVNLQGLEPGKLRLNGAVLADIYLGRITTWNDPKI
                     AALNPGVALPTGKINVVHRSDGSGTTFNFVNYLSKVSPDWKTKVGEGTSVNWPTGIGG
                     KGNEGVAAYVKQIPGSIGYVELAYALQNRMSYGAMQNAAGKWVLPNAASFQAAAASAD
                     WTQAKDFALVITNAPGEDAWPITATNFILMYKQPKDPARSKAALDFFRWALENGQSQA
                     KALDYVPLPPELVKQVEAYWASEFK"
     gene            complement(1704..2735)
                     /locus_tag="VLM17_07170"
     CDS             complement(1704..2735)
                     /locus_tag="VLM17_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009575047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR65363.1"
                     /translation="MSKHSFFDDYSEGAHPRVLELLAASNLRQEPGYGHDSLTVRAAA
                     LLRDAIGNPGAAVHLLSGGTQANLVALAAMLRPFESVVAAESAHVAVHETGAIEATGH
                     KVHALPGRGGKLTAAQVRELVAQHRDEHMVRPRVVFVSQPTELGTLYSAREMTELADA
                     CRELGLHLYLDGARLPAALASPACDLPLARLAALVDAFYLGGTKNGALLGEALVIVNP
                     ALQPDFRFHLKQRGALLAKGRVLGAQFAALLEDGLYLQLARHANAMAARLADGLRAAG
                     VPFLGEPVTNQVFPILRDDVIAALRGQFGFHVWSRIDEERSAIRLVTSWATSAEAVDT
                     LLEAFTRCR"
     gene            complement(2839..>3378)
                     /gene="pstS"
                     /locus_tag="VLM17_07175"
     CDS             complement(2839..>3378)
                     /gene="pstS"
                     /locus_tag="VLM17_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HSR65364.1"
                     /translation="GSGTSFNFTNYLSKVSPAWKQEVGEGTAVEWPSGIGGKGNEGVA
                     AYVKQIRGGIGYVEYAYALQNHLSFSRMRNAAGQFVQPRSETFSAAAATADWNSAPDF
                     NVIMTNAPGGDAWPITATTWAIMYKKPKNAGSAKAAFDFFQWSFEHGQAQADALDYVP
                     LPDTLVRKIEAYWATNFKH"
BASE COUNT          524 a         1118 c         1192 g          544 t
ORIGIN      
        1 tgagcgggat ttggcccagc gtgtcggaga ggcccggttc gatgcgcgcc atgaacggca
       61 cgaacacgaa caggccccac atgccgtaga tgatcgacgg gatgccagcg agcagttcga
      121 tcgcgatgcc gaccggcgcg cgcaacggcc gcggcgcgat ctcggtgagg aacatcgcga
      181 tgccgaagct gaccgggacg gcgatgagca tggcgatcag cgccgtcgcc agcgtgccgt
      241 agatcggcac gccggcgccg aactgctggc cgaccggatc ccaggcctgc gaccacagga
      301 aaccgatgcc gaactgccgg aacgcatcgc gtccacccca cgccatcgac agcgcggcgg
      361 cgagcaggat cgccagcaca agcaggcccg cgcccgtcac cagccagcgg aagcgccggt
      421 cggcgcgcag gtcggtggtg tcgcggcgtt cggcgcccac ggagagcacg cttgcgttca
      481 tttcggaagg cgccagcagc ggaggaagag gcggcgtcga cggatcactt gaactcggac
      541 gcccagtagg cttccacctg cttcaccagt tcggggggca gcggcacgta gtccagcgcc
      601 ttcgcctgtg actggccgtt ctccagcgcc cacctgaaga aatccagcgc tgccttggag
      661 cgggccggat ccttcggctg cttgtacatg aggatgaaat tggtcgcggt gatcggccag
      721 gcgtcctcgc ccggcgcgtt ggtgatcacc agcgcgaagt ccttcgcctg cgtccagtcc
      781 gcgctcgccg cggcggcctg gaagctggcg gcgttcggca gcacccattt gccggcggcg
      841 ttctgcatcg cgccgtagct catcctgttc tgcagcgcgt aggcgagttc gacgtagccg
      901 atcgagcccg ggatctgctt cacgtaggcg gccacgccct cgttgccctt gccgccgatg
      961 ccggtcggcc agttgaccga agtgccttcg cccaccttcg tcttccagtc ggggctgact
     1021 ttcgagagat agttgacgaa attgaaggtc gttcccgaac cgtcagaccg gtgcacgaca
     1081 ttgatcttgc cggtcggcag cgcgacgccc ggattgagtg cggcgatctt cggatcgttc
     1141 caggtcgtga tgcgcccgag atagatgtcg gcgaggaccg cgccgttgag gcgcagcttg
     1201 ccgggctcga ggccttgcag gttgaccacc ggcacgacac cgccgatggc gtccgggaac
     1261 tggcccagcc ctgccgtggc cagttcggcg ctgtcgagcg gcttgtcgga cgaaccgaag
     1321 tcgaccgtgc cggccttgat ctgcgcgatg ccgccgcccg agccgatcga ctggtagttg
     1381 atcttgtggc ccgtctgcgt gtggtacgtg tccgaccact tcgacagcag cggatagatg
     1441 aaggtcgcgc cggcaccggt gatctcggcg gccacgggag ccgtgccctg cgccgaaggg
     1501 gccgtcgacg cggatggcgc ggacggttca ttgccaccct tgcatccggc cagcagcagc
     1561 gtggcgagcc cgacgcacgc caagggcgag aggatcctgt tcatgtgcac ctccgtcgac
     1621 ataaccgcct gaggatggcg gcatcggtgg tgctattgga tgatggtttt gttacaccgg
     1681 tatgaccccg gtgggtccgc tgttcagcgg cagcgcgtga aggcctcaag cagggtgtct
     1741 acggcctccg ctgatgtcgc ccacgaggtg accagccgga tggcggaacg ctcctcgtcg
     1801 atgcgcgacc agacgtggaa gccgaactgc ccgcgtaacg cagcgatcac gtcgtcgcgc
     1861 aggatgggga atacctggtt ggtgacgggc tcgccgagga acggaacacc tgctgcacgc
     1921 agcccgtcgg cgaggcgcgc cgccatcgcg ttggcgtgcc gcgcgagctg caggtaaagc
     1981 ccgtcctcga gcagcgccgc gaactgcgcg cccagcacgc gtcccttggc cagcagcgcg
     2041 ccgcgctgct tgaggtggaa gcggaagtcg ggctgcagcg cgggattgac gatcaccagg
     2101 gcttcgccca gcagggcacc gttcttggtg ccgcccaggt agaacgcgtc caccagtgcc
     2161 gccagtcgcg ccaatggcag gtcgcacgcg gggctggcga gcgccgcggg caggcgggcg
     2221 ccgtccaggt acagatggag cccgagctcg cggcaggcat ccgccagttc ggtcatttcg
     2281 cgcgccgaat acagggtgcc gagttcggtc ggctgcgaca cgaacaccac ccgcggccgc
     2341 accatgtgct cgtcgcggtg ctgcgcgacg agctcgcgca cctgcgcggc ggtgagcttg
     2401 ccgccgcggc cgggaagcgc atgcaccttg tgcccggtcg cctcgatcgc tccggtctcg
     2461 tgcacggcga cgtgcgcgct ttcggcggcg accaccgatt cgaacggccg cagcatcgcc
     2521 gcgagcgcga cgaggttggc ctgggttccg ccggagagca ggtgcaccgc cgcgccgggg
     2581 ttgccgatcg catcgcgcaa cagggcggcg gcgcgcacgg tcaggctgtc gtggccgtag
     2641 ccaggctcct gccgcaggtt gctggcggcc agcagttcga ggacgcgcgg gtgcgcgccc
     2701 tcggagtagt cgtcgaagaa gctgtgcttg gacatggcgg ccacggcgcg gggacggggc
     2761 atcttagccg cgccgcacgc ccgaaaaaaa aagcgggccc cgctaaggcg cccgccccga
     2821 gacgcccgcg gcgccggttc agtgcttgaa gttcgtggcc cagtaggcct cgatcttcct
     2881 gaccagggtg tccggcagcg gcacgtagtc gagcgcgtcg gcctgggcct gtccgtgctc
     2941 gaaggaccac tggaagaagt cgaaggcggc cttcgcgctg ccggcgttct tcggcttctt
     3001 gtacatgatc gcccacgtcg ttgcggtgat cggccaggcg tccccgcccg gcgcattggt
     3061 catgatgacg ttgaagtcgg gcgcggaatt ccagtcggcg gtggcggcgg cggccgagaa
     3121 ggtttccgag cgcggctgca cgaactggcc ggccgcgttg cgcatccggc tgaacgacag
     3181 gtggttctgc agcgcgtagg cgtactcgac gtagccgatg ccgccgcgga tctgcttcac
     3241 gtacgcggcg acgccctcgt tgcccttgcc gccgatgccg gacggccatt ccaccgcggt
     3301 gccttcgccg acctcctgct tccaggcggg gctgaccttc gacaggtagt tggtgaagtt
     3361 gaagctggtg cccgagcc
//
LOCUS       DATIQC010000339         1614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_446307, whole genome shotgun sequence.
ACCESSION   DATIQC010000339 DATIQC010000000
VERSION     DATIQC010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446307"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..713)
                     /gene="ftsA"
                     /locus_tag="VLM17_07180"
     CDS             complement(<1..713)
                     /gene="ftsA"
                     /locus_tag="VLM17_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HSR65365.1"
                     /translation="MNRKGDKSLIVGLDIGTSKVVALVGEYSPGNPIEVIGIGSHESR
                     GLRRGVVVDIDSTVQSIQRAIEEAELMAGCEIRSVYASISGNHIQCRNSQGIAPIRDG
                     EVTYADLDRVLEAAKAVAVPADQKILHAIPRDYVLDDSQEGIRNPVGMSGVRLEVHAH
                     LVICAQSAAANISKCVQRCGLQVDDLILSSLASATAVLTSDERELGVVLVDIGAGTTD
                     IAVFVHGAIAHTASLPIAG"
     gene            complement(710..1564)
                     /locus_tag="VLM17_07185"
     CDS             complement(710..1564)
                     /locus_tag="VLM17_07185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HSR65366.1"
                     /translation="MNALLRILAWTLALALVVLPVVAVVNGWVGVERWPLRTLRVEGG
                     LHRVDTARLRATVLPYARAGFFAVRLGDAQAAVARLPWVEHAEVRKRWPDVLEVSVVE
                     HQPFARWGTDRVLSRRGRLFPLRGAAVPNGLPLLDGPEARVPDVVALYNEANALFAPG
                     GLSVRALALDRRGSWSLTLSNATRVEVGSQEPQARLARFARLLPQLLSQKQQPLARAD
                     LRYTNGFALSWGERPRQEDASQASAAVGERPAMDGRAGRSGTGGSAPWMAATNRQETT
                     RVLQQERS"
BASE COUNT          233 a          589 c          562 g          230 t
ORIGIN      
        1 tcgccggcga tcggcagcga ggcggtgtgc gcgatcgcgc cgtgcacgaa cacggcgatg
       61 tcggtggtgc ccgcgccgat gtcgaccagc accacgccga gctcgcgctc gtcggaggtc
      121 agcactgcgg tggccgaggc cagcgatgac aggatgagat cgtcgacctg cagcccgcag
      181 cgctgcacgc acttgctgat gttggccgcg gccgactgcg cgcagatcac gaggtgtgcg
      241 tgcacctcga ggcgcacgcc gctcatgccg accgggttgc ggatgccttc ctgcgaatcg
      301 tccagcacgt agtcgcgcgg gatcgcgtgg aggatcttct ggtcggccgg caccgcgacc
      361 gccttggccg cctcgagcac gcggtcgagg tcggcgtagg tgacctcgcc gtcgcggatc
      421 ggcgcgatgc cctgcgagtt gcggcactgg atgtggttgc cggagatcga tgcgtacacc
      481 gagcgtatct cgcagccggc catcagctcg gcttcctcga tcgcgcgctg gatcgactgc
      541 acggtggaat cgatgtccac gaccacgccg cggcgcaggc cgcgcgattc gtgcgagccg
      601 attccgatca cctcgatcgg gttgccgggc gagtactcgc cgaccagcgc caccaccttg
      661 gaggtgccga tgtcgaggcc gacgatgagc gacttgtcgc ctttgcggtt catgaccttt
      721 cctgctgcaa gacccgagtc gtttcttggc gattcgttgc cgccatccat ggcgccgacc
      781 caccagttcc ggaccgccct gcccggccat ccatggccgg gcgctcgccg accgcagcgg
      841 acgcctggct ggcgtcctct tgccgcggtc gctcgcccca gctcaacgcg aaaccattgg
      901 tgtaacgcag gtccgcgcgc gcgagcggct gctgcttctg cgacagcagc tgcggcagca
      961 ggcgcgcgaa gcgggccagg cgcgcctgcg gctcctggct gccgacttcg acccgggtag
     1021 cgttggacag cgtcagcgac cagctgccgc ggcggtcgag cgcgagcgcg cgcaccgaca
     1081 gtccaccggg cgcgaacagc gcgttcgcct cgttgtagag cgcgacgaca tcgggtacgc
     1141 gcgcttcggg gccgtcgagc agcggcagcc cgttcggcac cgcggcgccg cgcagcggga
     1201 acagccggcc gcggcgcgac agcacgcggt cggtgcccca gcgcgcgaac ggctggtgct
     1261 cgaccacgct cacctcgagc acgtccggcc agcgcttgcg cacctccgca tgctccaccc
     1321 acggcagccg cgccaccgcg gcctgcgcat ctccgaggcg aaccgcgaag aagccggcgc
     1381 gcgcgtacgg cagcaccgtc gcgcgcaggc gtgcggtgtc gacgcggtgc aggccgcctt
     1441 cgacgcgcag cgtccgcagc ggccagcgct cgacgccgac ccagccgttg acgaccgcca
     1501 ccaccggcag cacgaccagc gcgagcgcga gcgtccaggc gaggatgcgc agcagtgcgt
     1561 tcacggcgcg gcgacctcca gcgtctgctc gaggatccgc cagcacagtt cctc
//
LOCUS       DATIQC010000340         3730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_482155, whole genome shotgun sequence.
ACCESSION   DATIQC010000340 DATIQC010000000
VERSION     DATIQC010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482155"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..465
                     /locus_tag="VLM17_07190"
     CDS             <1..465
                     /locus_tag="VLM17_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HSR65367.1"
                     /translation="ELPMAEVVLDFFDRLKSVSRGYASLDYHFLRFQPGPFVRVDTLI
                     NGDKVDALSIITHRAHADRRGRDLTEKMRELIPRQMFDVAIQAAVGSQIIARSTVKAM
                     RKNVLAKCYGGDVSRKKKLLEKQKEGKKRMKQVGRVEIPQEAFLAVLQVDSK"
     gene            561..1352
                     /gene="lepB"
                     /locus_tag="VLM17_07195"
     CDS             561..1352
                     /gene="lepB"
                     /locus_tag="VLM17_07195"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HSR65368.1"
                     /translation="MRWFEIALVTLTLFTGVVWLLDKLFLARRREARAGLLEPKEPVI
                     VDYAKAFFPVLAVVLVLRSWVAEPFRIPSSSMMPSLLIGDFILVNKFAYGLRLPISNQ
                     KFISIGEPVRGDVVVFRPPQHPEQDWIKRVVGLPGDTIAYRDHTVWLNGKPLKYAADG
                     RYVGVGQGADATGSRLMTEQLPGRPHPVLERDDLPFFVQGEGEWTVPAGQYFVMGDNR
                     DNSEDSRFWGFLPEANLRGKAFLVWMHWDGSAGGVDFNRIGSRIP"
     gene            1387..1770
                     /locus_tag="VLM17_07200"
     CDS             1387..1770
                     /locus_tag="VLM17_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4845 domain-containing protein"
                     /protein_id="HSR65369.1"
                     /translation="MKRNQGGMTLIGFVIVLAVVGFFAYVGMKLFPMYQEFYSVKKAL
                     SGLKTEPGIADQDPGKIEDLFFRRLYVSYSDNVNKDNVKVERMEGGWKMTVDYEVRKP
                     LVYNLDIVGKFHAVENLTRSSGNPD"
     gene            1775..2443
                     /gene="rnc"
                     /locus_tag="VLM17_07205"
     CDS             1775..2443
                     /gene="rnc"
                     /locus_tag="VLM17_07205"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HSR65370.1"
                     /translation="MPATFGGRTFADGDLLAQALRHRSAGSPHNERLEYLGDALLNLV
                     VAEQLYNRWPRADEGALTRARAELVRESALAGIARSLDLGARLTLGPGEMKSGGHRRD
                     SILADALEAVIAACYLDAGFDACRDFVLPWIEPLLAALPPPSQVGKDAKTRLQEWLQA
                     RQKPLPVYALVEEGGEEHARTFRVSCTLESPALVTEGSGTSRRAAEQAAAEAAMARIG
                     KPAT"
     gene            2488..3411
                     /gene="era"
                     /locus_tag="VLM17_07210"
     CDS             2488..3411
                     /gene="era"
                     /locus_tag="VLM17_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HSR65371.1"
                     /translation="MSEVPFRAGHVAVIGRPNVGKSTLVNALVGAKVSITSNRPQTTR
                     HRLLGIATFSDREGPRGQLLLVDTPGIHRDERRASSTAMHRWMNRAARGALEGVDAAA
                     LVIEAGRWDDEDALAYEALRAAGVPVVLVVNQVDRIKDKAALLPFLAKVSEGREFAAV
                     HPVSALKRKGLEPLVDDLLRLVPEQPALYAEDEITDKSQRFLAGELVREQLMRQLGAE
                     LPYATTVEIERFELDGAMFRIGAVIWVERDGQKAIVIGKGGSRLREIGSRARESMERL
                     FGTKVFLETWVRVRAGWSDDEAALRAFGYTE"
     gene            3475..>3730
                     /locus_tag="VLM17_07215"
     CDS             3475..>3730
                     /locus_tag="VLM17_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein O N-terminal
                     domain-containing protein"
                     /protein_id="HSR65372.1"
                     /translation="MRYVAEAAFVLHARPWRETSLLVEVLSEGHGRLGLVARGVQGPK
                     RHVLRAALQPLQSIRFDAVQHGELAQLRAAEAQDQLVEVEA"
BASE COUNT          589 a         1268 c         1315 g          558 t
ORIGIN      
        1 gagctgccga tggcggaggt cgtgctcgac ttcttcgacc gactgaagtc cgtctcgcgc
       61 ggctacgcct cgctggacta ccacttcctg cggttccagc ccggtccgtt cgtgcgcgtc
      121 gacacgctga tcaacggcga caaggtcgac gcgctcagca tcatcacgca ccgcgcgcac
      181 gccgaccggc gcgggcgcga cctgaccgag aagatgcgcg agctgatccc gcggcagatg
      241 ttcgacgtgg cgatccaggc cgccgtcggc tcgcagatca tcgcccgttc gacggtcaag
      301 gcgatgcgca agaacgtgct ggccaagtgc tacggcggcg acgtgtcgcg caagaagaag
      361 ctgctcgaga aacagaagga aggcaagaag aggatgaagc aggtcgggcg ggtggagatc
      421 ccgcaggaag ccttcctcgc cgtgctgcag gtggacagca agtaaccgct tttccctttt
      481 tcccatgggg gaaaggtgcc cgcagggcga ccctcaccca acccttctcc cgcgggagag
      541 gggctttcat cggagcacgc atgcgctggt tcgaaatcgc cctcgtcacc ctcacgctgt
      601 tcaccggcgt ggtctggctg ctcgacaagc tgttcctcgc caggcgccgc gaggcgcgcg
      661 ccgggctgct ggaacccaag gagccggtga tcgtcgacta cgccaaggcg ttcttcccgg
      721 tgctggcggt ggtgctggtg ctgcgcagct gggtcgcgga gcctttccgc attccctcca
      781 gttcgatgat gccctcgctg ctgatcggcg acttcatcct cgtcaacaag ttcgcctacg
      841 gcctgcgcct gccgatcagc aaccagaaat tcatctcgat cggcgagccg gtgcggggcg
      901 acgtggtggt gttccggccg ccgcagcatc cggagcagga ctggatcaag cgcgtggtcg
      961 ggttgccggg cgacaccatc gcctatcgcg accacaccgt gtggctcaac ggcaagccgc
     1021 tgaagtacgc cgccgacggc cgctacgtcg gcgtgggcca gggcgccgac gcgaccggct
     1081 cccggctgat gaccgagcag ctgcccggcc gcccgcaccc cgtcctcgag cgcgacgacc
     1141 tgccgttctt cgtccagggc gaaggcgaat ggacggtgcc ggccggccag tatttcgtca
     1201 tgggcgacaa tcgtgataat agcgaggaca gtcgcttctg gggcttcctg cccgaggcga
     1261 acctgagggg caaggccttc ctggtgtgga tgcactggga cggcagcgcg ggtggggtgg
     1321 acttcaaccg gatcggcagc cgcataccgt agctgcggtc ccatcgacgg tcgcaagggg
     1381 acgcaaatga agcgcaatca aggcggcatg accctgatcg ggttcgtgat cgtgctcgcg
     1441 gtggtcgggt tcttcgccta cgtcggcatg aagctgttcc cgatgtacca ggagttctac
     1501 tcggtgaaga aggcgctgtc cggcctcaag accgagcccg gcatcgccga ccaggacccg
     1561 ggcaagatcg aggacctgtt cttccggcgc ctgtacgtga gctattcgga caacgtcaac
     1621 aaggacaacg tcaaggtcga gcggatggaa ggcggctgga agatgaccgt cgactacgag
     1681 gtccgcaagc cgctggtcta caacctcgac atcgtcggca agttccatgc ggtcgaaaac
     1741 ctgacccggt cgagtggcaa tcccgactga ccgcgtgccg gccaccttcg gcggccgcac
     1801 gttcgccgac ggcgacctgc tggcgcaggc gctgcgccac cgcagcgccg gcagcccgca
     1861 caacgaacgg ctggaatacc tgggcgacgc cctgctcaac ctggtcgtcg ccgagcagct
     1921 ctacaaccgc tggccgcgcg ccgacgaagg cgcgctgacc cgcgcgcgcg ccgagctggt
     1981 gcgcgaatcg gcgctcgccg gcatcgcccg ctcgctcgac ctcggcgcgc gcctgaccct
     2041 cggccccggc gagatgaagt ccggcggcca ccgccgtgat tcgatcctcg ccgacgcgct
     2101 cgaggcggtg atcgccgcgt gctacctcga cgccggtttc gatgcgtgcc gcgatttcgt
     2161 gctgccgtgg atcgagccgc tgctggccgc gctgccgccg ccgagccagg tcggcaagga
     2221 tgcgaagacg cggctgcagg aatggctgca ggcgcggcag aagccgctgc cggtgtacgc
     2281 gctggtggag gagggcggcg aggaacacgc gcgcaccttc cgcgtttcct gcacgctgga
     2341 atcgcccgcg ctggtgaccg agggcagcgg cacctcccgg cgcgcggccg aacaggcggc
     2401 ggccgaggcg gcgatggcgc ggatcggcaa gcccgcgacc tgagcgccgc cgacggccgg
     2461 ggtggccgtc cgccgtacaa tcggcccatg agcgaagtcc ccttccgcgc cggccacgtc
     2521 gccgtcatcg gccgcccgaa cgtcggcaag tccaccctgg tcaacgcgct ggtcggcgcc
     2581 aaggtcagca tcacctccaa ccgcccgcag accacgcgcc accgcctgct cggcatcgcg
     2641 actttctctg acagggaggg gccgcgcgga cagttgctgc tggtcgatac gcccggcatc
     2701 caccgcgatg agcgccgcgc ctcctcgacg gcgatgcacc gctggatgaa ccgcgccgcg
     2761 cgcggcgcgc tggaaggcgt cgacgccgcc gcgctggtga tcgaggccgg gcgctgggac
     2821 gacgaggacg cgctcgcgta cgaggcgctg cgcgccgccg gcgtgccggt ggtgctcgtc
     2881 gtgaaccagg tcgaccggat caaggacaag gccgcgctgc tgcccttcct ggcgaaggtg
     2941 agcgaaggcc gcgagttcgc cgcggtgcac ccggtgtccg cgctcaagcg caagggcctg
     3001 gagccgctgg tcgacgacct gctcaggctc gttcccgaac agcccgcgct gtatgccgag
     3061 gacgagatca ccgacaagag ccagcgcttc ctcgccggcg agctggtgcg cgagcagctc
     3121 atgcgccagc tcggcgcgga gctgccgtac gcgacgacgg tggagatcga gcgcttcgag
     3181 ctcgacggcg ccatgttccg catcggcgcg gtgatctggg tcgagcgcga cggccagaag
     3241 gcgatcgtga tcggcaaggg tggcagccgc ctgcgcgaga tcggcagccg cgcccgcgag
     3301 tcgatggagc ggctgttcgg caccaaggtg ttcctcgaaa cctgggtgcg ggtgcgcgcc
     3361 ggctggtcgg acgacgaggc cgcgctgcgc gcgttcgggt atacggagta gcccgggcga
     3421 ggccgacggg ccgcgcccgg gtgcgccgtg cttgccgggc cacaggatgt tccgatgcgc
     3481 tacgtcgccg aagccgcctt cgtcctgcat gcgcgcccct ggcgcgagac cagcctgctg
     3541 gtcgaggtgc tgagcgaagg ccatggccgg ctcgggctgg tcgcgcgcgg cgtgcagggg
     3601 ccgaagcggc acgtgctgcg cgcggcgctg cagccattgc agtccatccg tttcgatgcc
     3661 gtgcagcacg gcgagctcgc gcagctgcgc gcggccgagg cgcaggacca gctcgttgag
     3721 gtagaagccg
//
LOCUS       DATIQC010000341         1556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_270188, whole genome shotgun sequence.
ACCESSION   DATIQC010000341 DATIQC010000000
VERSION     DATIQC010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270188"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1063)
                     /locus_tag="VLM17_07220"
     CDS             complement(<1..1063)
                     /locus_tag="VLM17_07220"
                     /inference="COORDINATES: protein motif:HMM:NF017021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HSR65373.1"
                     /translation="MRRHPWRVALAVFAIAIVALVLLWDWNWFKGPVERIVAARTGRS
                     FDIGGDLDVDLGRTTTIRLDRVSFGNARWSKVPVMASADRVVFGLELWPLLRRQVRIP
                     QLRLVHPRLLLERGPGDTGNWVFGRQGGSQARFGRLWIDDGRLQYLDAKQDTSIDVAV
                     ASAAGAVATAPPIDVRGHGRWKGAAFQVRGRAESPLALRESGRPYHVDAIADAGATHA
                     HASGTLFDPVRLAGFDLQLALKGRNLADLYPLLHLAMPRSPPYRFDGRLTRELHGSRT
                     TWHYDHFTGKVGDSDLAGNAAVTVGGPRPFLRADLVSRTLDFDDLAVFINKAPRTGAG
                     ETTNPELAAQAAREQASPRV"
     gene            complement(1182..>1556)
                     /locus_tag="VLM17_07225"
     CDS             complement(1182..>1556)
                     /locus_tag="VLM17_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010482744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HSR65374.1"
                     /translation="YTPFTLVGLRHGPGWWLFAAIWTLALLGVAFKLFWTGRFPLLST
                     LLYVAMGWLIVVAIRPAWGSLDRWTLGWLFAGGAAYTLGTVFYHRDSLPYSHAVWHLF
                     VIAGSVCHYVAVLAQVLPARAG"
BASE COUNT          237 a          554 c          574 g          191 t
ORIGIN      
        1 gcacgcgcgg gctggcctgc tcgcgcgcgg cctgcgcggc gagctccggg ttggtcgttt
       61 cgccggcgcc cgtgcgcggc gccttgttga tgaagacggc gaggtcgtcg aagtcgagcg
      121 tgcgcgagac gaggtcggca cgcaggaagg gccgtgggcc gccgaccgtc accgccgcgt
      181 tgccggcgag gtcgctgtcg ccgaccttgc cggtgaaatg gtcgtagtgc caggtggtgc
      241 gcgacccatg cagttcgcgg gtgagccggc cgtcgaagcg gtacggcggc gagcgcggca
      301 tggccaggtg cagcagcggg tagaggtcgg cgaggttgcg gcccttgagc gccagctgca
      361 ggtcgaagcc ggccagccgc acgggatcga acagcgtgcc gctcgcatgc gcgtgggtcg
      421 cgccggcgtc ggcgatcgca tcgacgtggt agggccggcc ggactcgcgc agtgccagcg
      481 gcgactccgc gcgcccgcgc acctggaacg ccgcgccttt ccagcggcca tggccgcgca
      541 cgtcgatcgg gggcgccgtg gccaccgcgc ccgcggcgct ggccacggcg acatcgatgg
      601 acgtgtcctg cttcgcgtcg aggtactgca gccgaccgtc gtcgatccac aaccgcccga
      661 accgcgcctg gctgcctccc tgccggccga acacccagtt gccggtgtcg ccggggccgc
      721 gctcgagcag cagccgcggg tgcaccagcc gcaattgcgg gatccgcacc tgccggcgca
      781 gcagcggcca cagttcgagg ccgaacacca cccggtccgc gctcgccatc accggcacct
      841 tcgaccatcg cgcgttgccg aagctcacgc ggtcgagccg gatggtggtg gtgcgcccga
      901 ggtcgacgtc gaggtcgccg ccgatgtcga agctgcgtcc ggtgcgcgcg gcgacgatcc
      961 gttcgaccgg gcccttgaac cagttccagt cccacagcag gacgagcgcg acgatcgcga
     1021 tcgcgaacac cgcgagcgcc acccgccagg gatggcgccg caaggcgtgg gccgatttcg
     1081 gagactggct ggacgccgcc ggcacgtggt cgcttcccgg tggtgggcca gccaccttcc
     1141 gcagcccgcg gtcaaccgtc ggtgaagccg ttgcgggcga ttcagcccgc ccgcgcgggc
     1201 aacacctgcg ccaggaccgc gacgtagtgg cacacgctgc cggcgatgac gaacaggtgc
     1261 cagaccgcgt gcgagtaggg cagggagtcg cggtggtaga acacggtgcc gagcgtgtag
     1321 gcggcgccgc cggcgaacag ccagcccagc gtccagcggt ccagcgatcc ccacgccggc
     1381 cggatcgcga ccacgatcag ccagcccatc gcgacataca acagcgtcga cagcagcggg
     1441 aagcgcccgg tccagaacag cttgaacgcg acgcccagca gcgccagcgt ccagatcgcg
     1501 gcgaacagcc accagcccgg gccgtggcgc aggccgacca gggtgaaagg cgtgta
//
LOCUS       DATIQC010000342         3428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_588113, whole genome shotgun sequence.
ACCESSION   DATIQC010000342 DATIQC010000000
VERSION     DATIQC010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588113"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..193)
                     /locus_tag="VLM17_07230"
     CDS             complement(<1..193)
                     /locus_tag="VLM17_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006450266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate sugar epimerase"
                     /protein_id="HSR65375.1"
                     /translation="MERIARPVASVWSLSDDRAGNRRQVDALARALGFGTVEARTLQP
                     RAPWRWVAPHRLPGDGHAFG"
     gene            282..893
                     /locus_tag="VLM17_07235"
     CDS             282..893
                     /locus_tag="VLM17_07235"
                     /EC_number="1.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010484192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonic semialdehyde reductase"
                     /protein_id="HSR65376.1"
                     /translation="MTAPADTAFQPLEPHALDVLFRQARTYNAFSGEVDDALLHRLYD
                     LLKWGPTTANSCPARFVFVKSPEAKAKLGPALDEGNYGKTMAAPCTVIVAYDLAFFDK
                     APVLFPHTDARGWFDAKPEAELTTIALRNGSLQGAYLILAARALGLDCGPMSGFDNAK
                     VDAAFFAGTRWRSNFLVNLGHGDPASIFPRSPRLPFDEACEIA"
     gene            920..1513
                     /locus_tag="VLM17_07240"
     CDS             920..1513
                     /locus_tag="VLM17_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR65377.1"
                     /translation="MRRTLVLAALLVAGLVQAAPARYDLDPRHTQVRFGWTHFGFSHM
                     SGRFDQVQARFQFDPADPAKSSITVDIPLAGIDTGVPALDEHLRSAGFFDAARYPAAT
                     FRSTKVESVGPKALKVTGDLTLHGVTRPVVLDVTINQVGPYPMGGRASAGFDASTTLK
                     RSDWGIAAYVPNVSDEIALSISTEAHVPKYDGAPAGQ"
     gene            1518..2228
                     /locus_tag="VLM17_07245"
     CDS             1518..2228
                     /locus_tag="VLM17_07245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HSR65378.1"
                     /translation="MIIERPAAARGHVQIGWLDSRHTFSFGRYHDPAWMGFGPLRVIN
                     EDRVAAGAGFPPHGHANMEILSYVLAGALSHRDSTGSGGEVRPGELQWMSAGHGIEHS
                     EFNASQDAPVHFLQVWIQPDRVNAPPAHAQRAFDPTQRRRRWATLASPDGADDSLAIR
                     QQAWLRGTLLGADEGVEWPLEPARRYWLHVARGEVVVGERRLAAGDALGFVDEDGMLR
                     VQGAGEGEADVLLFDLPA"
     gene            2400..2600
                     /locus_tag="VLM17_07250"
     CDS             2400..2600
                     /locus_tag="VLM17_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007081103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HSR65379.1"
                     /translation="MTQPVPQEVPANTQHRYEVRRADLPLSCPTPAMALWNSHPRVYL
                     PIAQEGGQAQCPYCGAQFVLVD"
     gene            2614..>3428
                     /locus_tag="VLM17_07255"
     CDS             2614..>3428
                     /locus_tag="VLM17_07255"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR65380.1"
                     /translation="MGRRLTVLQLLPALEAGGVERSTVEIADALVRAGHRALVVSAGG
                     RLLPELLATGAEHVALDIGRKSPLSLRHVPALRRLFAREGVDIVHARSRLPAWLARLA
                     LRGMRAPPRFVTTVHGLNSPSRYSAVMVSGERVICVSRTVRDYVLAHYPKLDRKRLRV
                     VPRGIDPARFPRAPRPDRAARRRVATLHPALGGDGPLLLLPGRGTRLKGHVDALRLLA
                     ALREEGTDARLWLPGARQPLREDYVRELEGEATRLGVAGALAVTAPTSEIAEA"
BASE COUNT          446 a         1292 c         1199 g          491 t
ORIGIN      
        1 cgccgaaggc atggccatcg ccgggcagcc ggtgcggcgc gacccagcgc cacggcgcgc
       61 gcggctgcag cgtgcgcgcc tcgaccgtgc cgaagccgag ggcacgcgcc aatgcatcca
      121 cctggcggcg gttgccggcc ctgtcgtcgc tgagcgacca cacgctggcg acggggcgcg
      181 cgattcgttc catcggaagg acccatccgt tccggcgtgc ttggctgttg cccgacgcgc
      241 gacactctac actgcgcctc ttccgtgcaa gcaggaccgc catgaccgcc ccggccgata
      301 ccgccttcca gccgctcgaa ccgcacgcgc tggacgtgct gttccgccag gcccgcacct
      361 acaacgcctt cagcggcgag gtcgacgacg cgttgctgca ccggctctac gacctgctca
      421 agtggggccc caccaccgcc aacagctgcc ccgcgcgctt cgtgttcgtg aagtcgccgg
      481 aggccaaggc caagctcggt cccgcgctcg acgaaggcaa ctacgggaag acgatggccg
      541 cgccgtgcac ggtgatcgtc gcctacgacc tggcgttctt cgacaaggcg ccggtgctgt
      601 tcccgcacac cgacgcgcgc ggctggttcg acgccaagcc cgaagccgaa ctcaccacca
      661 tcgcgttgcg caacggcagc ctgcagggcg cctacctgat cctcgccgcg cgcgcgctcg
      721 gcctcgactg cgggccgatg tcgggcttcg acaacgcgaa ggtcgacgcc gcgttcttcg
      781 ccggcacgcg ctggcgttcc aacttcctcg tcaacctcgg ccacggcgac cccgcgagca
      841 tcttcccgcg ttcgccgcgc ctgccgttcg acgaggcctg cgagatcgcc taggcggtcc
      901 cccgacccag gattccccca tgcgccgcac cctcgttctc gccgccctgc tcgtcgccgg
      961 cctcgtccag gccgccccgg cgcgctacga cctcgatccg cgccacaccc aggtgcgctt
     1021 cggctggacc catttcggct tcagccacat gagcggccgc ttcgaccagg tgcaggcgcg
     1081 gttccagttc gacccggccg atccggcgaa gtcctcgatc acggtcgaca tcccgctcgc
     1141 cggcatcgac accggcgtgc ccgcgctcga cgaacacctc aggagcgccg gtttcttcga
     1201 tgccgcgcgg tacccggccg cgaccttccg cagcaccaag gtcgaaagcg tcgggccgaa
     1261 ggcgctcaag gtcaccggcg acctcaccct gcacggcgtg accaggccgg tggtgctcga
     1321 cgtcaccatc aaccaggtcg ggccgtatcc gatgggcggc cgcgcgtcgg ccggcttcga
     1381 cgccagcacc acgctcaagc gcagcgactg gggcatcgcc gcctacgtgc ccaacgtcag
     1441 cgacgagatc gcgctgtcga tcagcaccga ggcgcacgtg ccgaagtacg acggcgcgcc
     1501 ggccgggcag tgacgccatg atcatcgagc gtccggcggc cgcgcgcggc catgtgcaga
     1561 tcggctggct ggacagccgg cacacgtttt cgttcggccg ttaccacgat ccggcgtgga
     1621 tgggcttcgg cccgctgcgg gttatcaacg aggaccgcgt cgctgccggc gcgggctttc
     1681 cgccgcacgg ccacgccaac atggagatcc tcagctacgt gctggcgggc gcgctgtcgc
     1741 atcgcgacag caccggcagc ggcggcgagg tgcgtcccgg cgaactgcag tggatgagcg
     1801 ccggccatgg catcgagcac agcgagttca atgcatcgca ggacgcgccg gtgcacttcc
     1861 tgcaggtctg gatccagccc gaccgggtca acgcgccgcc ggcccatgcg cagcgtgcgt
     1921 tcgatccgac gcagcgtcgc cggcgctggg cgacgctggc gtcgcccgat ggcgccgacg
     1981 acagcctcgc gatccgccag caggcgtggc tgcgcggcac gctgctcggc gcggacgagg
     2041 gcgtggaatg gccgctggag ccggcgcggc gctactggct gcatgtcgcg cggggcgagg
     2101 tcgtcgtggg cgaacgccgg ctcgcggccg gcgacgcgct cggcttcgtc gatgaagacg
     2161 gcatgttgcg cgtgcagggc gcgggcgagg gcgaggcgga cgtgctgctg ttcgacctgc
     2221 cggcgtagcc cgggtcaggc gcagccgcac ccgggcctcc tcggcgctgc gtggaccggt
     2281 gcgctgcgtt cgcccgggct accgtgtcga gatcctgcgt cgcggtcgcc tccgcgtgag
     2341 ccggccgcac gtccccggct gctagactgc gcgcctcgcg tcgccggttc tttttcgcca
     2401 tgacccaacc cgttccgcag gaagtccccg ccaacaccca gcaccgctac gaggtgcggc
     2461 gcgcggacct gccgctgagc tgcccgaccc cggcgatggc gctgtggaac tcgcacccgc
     2521 gcgtctacct gccgatcgcg caggaaggcg gccaggcgca gtgcccgtac tgcggcgcgc
     2581 agttcgtcct ggtcgactga gcgcgtccgg cgcatgggtc gccggctgac cgtgctgcaa
     2641 ctgctgcccg cgctggaggc gggtggcgtg gagcgctcca ccgtcgagat cgcggacgcg
     2701 ctggtgcgcg ccggccatcg tgcgctggtg gtgtccgcgg gcggccgcct gctgcccgag
     2761 ctgctcgcca ccggcgccga gcacgtcgcg ctcgacatcg gccgcaagtc gccgctcagc
     2821 ctgcgccacg tgccggcatt gcggcgcctg ttcgcccgcg agggcgtgga catcgtgcat
     2881 gcccggtcgc ggctgccggc ctggctggcg cgactggcgc tgcgcggcat gcgcgcgccg
     2941 ccgcgcttcg tcaccaccgt gcacggactc aactcgccgt cgcgctacag cgcggtgatg
     3001 gtgtccggcg aacgggtgat ctgcgtctcg cgcaccgtgc gcgattacgt gctggcgcat
     3061 tacccgaaac tcgaccggaa gcgcctgcgg gtggtgccgc gcggcatcga tccggcgcgc
     3121 ttcccgcgcg cgccgcggcc ggatcgcgcc gcgcgccggc gcgtggccac gttgcacccc
     3181 gcgctgggtg gcgatgggcc gctgctgctg ctgcccgggc gcggcacgcg gctgaagggc
     3241 cacgtggatg cgctgcgcct gctcgccgca ttgcgcgagg aaggcaccga tgcgcggttg
     3301 tggctgcccg gcgcgcgcca gccgctccgc gaggactacg tgcgcgaact cgagggcgag
     3361 gcgacgcggc tgggggtcgc cggcgcgctc gcggtgaccg cgcccacctc ggaaatcgcc
     3421 gaggccta
//
LOCUS       DATIQC010000343         2892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_411413, whole genome shotgun sequence.
ACCESSION   DATIQC010000343 DATIQC010000000
VERSION     DATIQC010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411413"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..545
                     /locus_tag="VLM17_07260"
     CDS             <1..545
                     /locus_tag="VLM17_07260"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR65381.1"
                     /translation="RTGLAIALSFGGVLVLGFDPIVLDAPASLVLMLVSALFLAIGTV
                     LMRPLRGLGMVSQQGWTAIIALLPLLALSARLEPHGFAGLRHAGWIGWGGAAYSALFS
                     SLLGHGLYYVLVQRHPVAQVTPWLLISPVLAVLLGILFYGDRPGPQLWLGGAMVLGGV
                     LLIALRALATARPLPPAEEC"
     gene            complement(487..903)
                     /locus_tag="VLM17_07265"
     CDS             complement(487..903)
                     /locus_tag="VLM17_07265"
                     /inference="COORDINATES: protein motif:HMM:NF036460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5329 family protein"
                     /protein_id="HSR65382.1"
                     /translation="MVFLRGWLLFACVCSCAAFAGESPVDREIDALIARVGQAQGVVF
                     IRNGSTHGAAEAAAHLQRKRIAAGGRFASAEQFIDRVGSRSSLTGRAYRVRMADGREE
                     DSAAWLRQLLRQVRAGRVSTPPPAAAGAPWPAPAGR"
     gene            complement(933..1787)
                     /locus_tag="VLM17_07270"
     CDS             complement(933..1787)
                     /locus_tag="VLM17_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR65383.1"
                     /translation="MREALVFGASGQVGRPLLARLLADGWRVTAVSRAPQPIADGVRW
                     LRGDLFDPGDVPRAPEAIFSCGPLDLFAQWYARNPVGAAQVVAFGSTSVHVKRDSADL
                     AERDLAARLREGEHALLGTAAARGARAALLRPTLVYGSGRDRTLSRIAAIARRWRRFV
                     LPRGAGGLRQPVHVDDLADAAVAAAAAQATGAFDLPGGEALAYREMVARVLAALDPPA
                     RLLEVPAPLFATALALARAGGRLGGFGDAALARLGEDLVFDPAPARATFGYAPRAFRP
                     TPAMFTPG"
     gene            complement(1787..>2892)
                     /gene="nhaA"
                     /locus_tag="VLM17_07275"
     CDS             complement(1787..>2892)
                     /gene="nhaA"
                     /locus_tag="VLM17_07275"
                     /inference="COORDINATES: protein motif:HMM:NF007112.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HSR65384.1"
                     /translation="LVANSPLAGMYARLIDLPLQVRIGDFELHKPLLLWINDGLMAVF
                     FLLVALEIKRETLSGQLAGRQQLLLPLVCASAGVALPALLFTAFNRGDAVAMRGWAVP
                     TATDIAFALGVLALLGPRVPVGMKLLLSTIAVIDDLIAILIIALFYSHGLSLVALAWA
                     ALALAGMWWLNRRHVTALTPYLLLGLVLWVCVLKSGVHATLAGVATGLMIPHVDPRND
                     IPDAIEHSPLEHLEHALHPWVAYLILPLFAFANAGLVLGGLQAGDFVAALPLGIGVGL
                     VAGKPVGIVGAALAMRALGWARFPDGMDLRAMLGLGVLCGIGFTMSLFIASLAYAGVP
                     YEEAVLGVLGGSVVSALLGYAWLRVVLPARAAC"
BASE COUNT          434 a         1080 c         1038 g          340 t
ORIGIN      
        1 ggcgcaccgg gctggcgatc gcgctgagct tcggcggcgt tctggtgctg ggcttcgatc
       61 cgatcgtgct cgatgcgccg gcctcgctgg tgctgatgct ggtgtcggcg ctgttcctcg
      121 cgatcggcac ggtgctgatg cgcccgctca ggggcctggg catggtcagc cagcagggct
      181 ggaccgcgat catcgccctg ctgccgctgc tcgcgctgag cgcaaggctg gagccgcacg
      241 gcttcgccgg cctgcgccac gccggctgga tcggctgggg cggcgcggcc tattcggcgc
      301 tgttctcctc gctgctcggc cacggcctct actacgtgct ggtacagcgg catccggtcg
      361 cgcaggtgac gccgtggctg ctcatctcgc cggtgctcgc ggtgctcctc ggcatcctgt
      421 tctacggcga ccgtcccggc ccgcagctgt ggctcggcgg cgcgatggtg ctcggcggcg
      481 tgctgctcat cgccctgcgg gcgctggcca cggcgcgccc gctgccgccg gcggaggagt
      541 gctgacgcgc ccggcgcgca cctgccgcag cagttggcgc agccaggcgg cgctgtcctc
      601 ttcgcgccca tcggccatgc gcacccggta ggcgcgcccg gtgagcgacg agcgcgagcc
      661 gacgcggtcg atgaactgct ccgcgctggc gaagcgtccg cccgcggcga tgcgcttgcg
      721 ttgcaggtgc gcggcggcct cggcggcgcc gtgcgtgctg ccgttgcgga tgaagacgac
      781 gccctgcgcc tggccgacgc gcgcgatcag cgcatcgatc tccctgtcga ccggcgactc
      841 gccggcgaat gcggcgcaac tgcagacgca ggcgaacagc agccaaccgc ggaggaagac
      901 catgcgcatc cgcgcagctt gccggttccg gctcaaccgg gggtgaacat cgccggggtc
      961 ggccggaacg cacgcggcgc atagccgaac gtcgcgcgcg ccggcgccgg atcgaagacc
     1021 aggtcctcgc ccaggcgcgc cagcgccgcg tcgccgaagc cgccgagccg gccgcccgcg
     1081 cgcgcgagcg cgagcgccgt cgcgaacagg ggcgccggca cttcaagcag gcgcgcgggg
     1141 ggatcgagcg cggcgagcac gcgcgcgacc atctcccggt aggccagcgc ctcgccgccc
     1201 ggcaggtcga acgcccccgt ggcttgcgcc gccgccgcgg cgacggccgc gtcggcgaga
     1261 tcgtcgacat gcaccggctg gcgcaatccg ccggcaccgc gcggcagcac gaagcgccgc
     1321 cagcgtcgcg cgatcgccgc gatgcggctg agcgtgcggt cgcggccgct gccgtagacc
     1381 agcgtcggcc gaagcaacgc cgcgcgggca ccgcgcgccg cggcggtgcc gagcagtgca
     1441 tgctcccctt cgcgcaggcg cgcggcgagg tcgcgttcgg caaggtccgc ggagtcgcgc
     1501 ttgacgtgaa cgctggtcga gccgaacgcg accacctgcg ccgccccgac cggattgcgc
     1561 gcataccact gcgcgaacag gtccagcggg ccgcagctga agatcgcctc aggcgcgcgc
     1621 ggcacgtcgc cgggatcgaa caggtcgccc cgcagccatc gcacgccgtc cgcgatgggt
     1681 tgcggcgcgc gcgacaccgc cgtcacccgc cagccgtcgg ccagcaaccg cgcgagcagc
     1741 ggccgcccga cctggccgct ggcgccgaac accagggcct cgcgcatcag cacgccgccc
     1801 gtgccgggag caccacgcgc agccacgcat agcccaacag cgccgacacc accgaaccgc
     1861 cgagcacgcc cagcaccgcc tcttcgtaag gcacgccggc gtacgccagc gaggcgatga
     1921 acaggctcat ggtgaagccg atgccgcaca gcacgccgag gcccagcatc gcgcgcaggt
     1981 ccatgccgtc ggggaaccgg gcccagccga gcgcgcgcat ggcgagcgcc gcgccgacga
     2041 tgccgaccgg cttgccggcg accagaccca cgccgatgcc gagcggcaac gcggcgacga
     2101 agtcccccgc ctgcaggccg ccgagcacca gcccggcgtt ggcgaacgcg aacaacggca
     2161 ggatcaggta ggcgacccac gggtgcagcg catgctcgag gtgttcgagc ggcgagtgct
     2221 cgatcgcatc ggggatgtcg ttgcgcggat cgacgtgcgg gatcatcagc ccggtggcga
     2281 cgccggcgag cgtcgcgtgc acgcccgact tcagcacgca tacccacagc accagcccga
     2341 gcaggaggta gggcgtgagc gcggtgacgt ggcgtcggtt gagccaccac atgccggcca
     2401 gcgcgagcgc cgcccaggcc agcgcgacca gcgacagccc gtgcgaatag aacagcgcga
     2461 tgatcaggat cgcgatcagg tcgtcgatga cggcaatcgt cgaaagcagc agcttcatcc
     2521 ccaccggcac gcgcggaccc agcagcgcga gcacgcccag cgcaaaggcg atgtcggtcg
     2581 ccgtcggcac cgcccagccg cgcatcgcaa cggcgtcccc ccggttgaac gcggtgaaca
     2641 gcagcgccgg cagcgccacg ccggcgctgg cgcacaccag cggcagcagc aactgctggc
     2701 ggccggccag ctgcccgctc agggtctcgc gcttgatttc gagcgcgacc agcaggaaga
     2761 acaccgccat caggccgtcg ttgatccaca gcagcaatgg cttgtgcagc tcgaagtcgc
     2821 cgatgcgcac ttgcagcggc agatcgatca ggcgcgcata catgccggcg agcggcgaat
     2881 tggcgaccag ca
//
LOCUS       DATIQC010000344         2699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_482188, whole genome shotgun sequence.
ACCESSION   DATIQC010000344 DATIQC010000000
VERSION     DATIQC010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482188"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VLM17_07280"
     CDS             <1..422
                     /locus_tag="VLM17_07280"
                     /inference="COORDINATES: protein motif:HMM:NF025077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HSR65385.1"
                     /translation="AEGEVGRGATAARLPFSQPQQAGRQSGLLFSPPGARMRRLVLVP
                     ALVFLLPACTWVHMAPGASAVKVVTVAPGGCERRGEVEVSVKDRLGPIERNPRKVRDE
                     LETLARNEGPGLAADTMQPLDGPEDGTQRWVAWRCRR"
     gene            759..1781
                     /locus_tag="VLM17_07285"
     CDS             759..1781
                     /locus_tag="VLM17_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase III"
                     /protein_id="HSR65386.1"
                     /translation="MLFQRVAIAGLAHVDAPRRLTSNEIYDRLRPTLDRLGIKSNVLE
                     EVAGVRERRLWDGEVKASDAATLAGVKALADAGIDADRVGLLVNTSVSRDYLEPSTAS
                     IVAGNLRLPDTCQNFDVANACLAFLNGMDIAGRMIETGEIDYALVVNGETADLAYEKT
                     LERLSRADVTAEQFRDEMATLTLGSGAAAMVMARAELAPGAPRYRGSVTRSATEWNQL
                     CRGDLVHDRMVADGRMLMIEGVKLGQKTFAAARIALGWVVDELDEFVIHQVSKAHTKA
                     FLKAFRIDPKKVLTIFGEHGNIGPASVPIVLSKLREGGRLKKGSRVALLGIGSGLNCS
                     MAEVVW"
     gene            1775..2113
                     /locus_tag="VLM17_07290"
     CDS             1775..2113
                     /locus_tag="VLM17_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003489493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HSR65387.1"
                     /translation="MVSLPACPQCASAFVYVDGALHVCPECGHEWSPGEVPAAEAARE
                     VRDAVGNLLADGDTVTVIKDLKVKGATSALKVGTKVRNIRLVDGDHDIDCRIEGFGAM
                     QLKSEFVRKA"
     gene            2213..>2699
                     /locus_tag="VLM17_07295"
     CDS             2213..>2699
                     /locus_tag="VLM17_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic/DOC family N-terminal domain-containing
                     protein"
                     /protein_id="HSR65388.1"
                     /translation="MLPRATGHYVPGSLAGSRYQAFIPDPLPPMPPLDLSTGGLLARK
                     ERADQALGRLDGITLMLPDPQIFLYQYVRKEALLSSQIEGTQSSLSDLLLFELDEAPG
                     VPLDDVEEVSNYIAALNHGLRRLREDDFPLSLRLIREMHALLLQGGRGATKQPGEFRQ
                     GQ"
BASE COUNT          418 a         1002 c          897 g          382 t
ORIGIN      
        1 gcgccgaagg cgaagtaggg cgcggcgcca cggcagcgcg cctgccgttc agccaaccgc
       61 agcaggccgg gcgacaatcc ggcctgcttt tttcgccgcc cggagcccgc atgcgccgcc
      121 tcgtcctcgt ccccgccctc gtcttcctgc tgcccgcctg cacctgggtg cacatggctc
      181 ccggcgccag cgcggtgaag gtggtgaccg tcgcccctgg tggctgcgag cgccgcggcg
      241 aggtcgaggt ctcggtcaag gaccgcctcg gtccgatcga acgcaatccg cgcaaggtgc
      301 gcgacgaact ggaaaccctg gcccgcaacg aaggccccgg cctggccgcc gacaccatgc
      361 agccgctcga cgggcccgag gacggcaccc agcgctgggt cgcctggcgc tgccggcgct
      421 gaaggccgta gcccgggtaa gcgcggcgca cccgggacca agttgagcgc agcgcgcccg
      481 ggcatccagc gaactctggt cgaggcgcac cacccgcggg tgcggcctta ggccttgccc
      541 gggctacgcc gctgaaggcc ggcgctccgc gcaccccggc caggagaggc gcgatcgcag
      601 gtggggcgca ggacacactg gcggcatcga gcgccgggaa tcgggcccgc gccgcgccgt
      661 cgcggggctg aatgcccgcc aatccgtgac ccgcgccggt gccccgcgcc cgcggaggcg
      721 gtatcctgtc gcgttttccg cgattttcgg acatccccat gctgttccag cgcgtcgcca
      781 tcgccggtct cgcccacgtc gacgcccccc ggcggctgac ctccaacgag atctacgacc
      841 gcctcaggcc caccctcgat cgtctcggca tcaagtcgaa cgtgctcgag gaggtcgccg
      901 gcgtgcgcga gcggcgcctg tgggacggcg aggtcaaggc ctccgacgcg gccacgctgg
      961 ccggcgtcaa ggccctcgcc gacgccggca tcgacgccga ccgcgtcggc ctgctggtca
     1021 acacctcggt cagccgcgac tacctcgagc cgtccacggc cagcatcgtc gccggcaacc
     1081 tgcgcctgcc cgacacctgc cagaacttcg acgtcgccaa cgcctgcctc gcgttcctca
     1141 acggcatgga catcgccggc cgcatgatcg agaccggcga gatcgactat gcgctggtgg
     1201 tcaacggcga aaccgcggac ctcgcctacg agaagacgct cgagcgcctc agccgcgccg
     1261 acgtcaccgc cgaacagttc cgcgacgaga tggccacgct caccctgggc agcggcgccg
     1321 ccgcgatggt gatggcgcgc gccgagctcg cccccggcgc gccgcgctat cgcggttcgg
     1381 tgacccgctc ggccaccgag tggaaccagc tgtgccgtgg cgacctcgtc cacgaccgca
     1441 tggtcgccga cggccgcatg ctgatgatcg agggcgtcaa gctcggccag aagaccttcg
     1501 ccgccgcgcg catcgcgctc ggctgggtgg tcgacgagct cgacgagttc gtcatccacc
     1561 aggtcagcaa ggcccacacc aaggcgttcc tcaaggcgtt ccgcatcgat ccgaagaagg
     1621 tcctgaccat cttcggcgag cacggcaaca tcggcccggc gtcggtgccg atcgtgctga
     1681 gcaagctgcg cgagggcggc cgcctgaaga agggcagccg cgtcgccctc ctcggcatcg
     1741 gctcgggact gaactgctcg atggccgaag tggtgtggtg agcctgccgg cgtgcccgca
     1801 gtgcgcgtcg gcgttcgtgt atgtcgacgg cgcactgcat gtctgcccgg aatgcgggca
     1861 cgagtggtcg ccaggcgagg tcccggcggc cgaggccgcg cgtgaagtcc gcgacgcggt
     1921 cggcaacctg ctcgccgacg gggacaccgt caccgtgatc aaggacctga aggtcaaggg
     1981 cgcgaccagc gcgctgaagg tcggcaccaa ggtccggaac atccgcctcg tcgacggcga
     2041 ccacgacatc gactgccgca tcgaaggctt cggcgcgatg cagctcaagt ccgaattcgt
     2101 ccgcaaggcc tgaagctgcg ggtttccttc ccgggctgga tctggacctt aaggaaacca
     2161 actggtatta atctttcctt gactgcgcca atcggccatg caaggaaagc tcatgctgcc
     2221 ccgcgccacc ggccactacg tccccggctc gctcgcgggc agccgctacc aggccttcat
     2281 ccccgacccc ctgccgccta tgccgccgct ggacctgtcc accggcgggc tgctcgcgcg
     2341 caaggagcgc gccgaccagg ccctcggccg gctggacggc atcaccctga tgctgcccga
     2401 cccgcagatc ttcctgtacc agtacgtccg caaggaggca ctgctgtcct cgcagatcga
     2461 gggcacgcaa tcctcgctgt cggacctgct gctgttcgag ctcgacgaag cccccggcgt
     2521 tccgctggac gacgtcgagg aagtgtccaa ctacatcgcc gcgctcaacc acggcctgcg
     2581 ccgcctgcgt gaggacgatt tcccgttgtc gctgcggctg atccgggaaa tgcacgcact
     2641 gctgctgcag ggcggccgcg gcgcgaccaa gcagccgggg gaattccgcc aggggcagg
//
LOCUS       DATIQC010000345         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_623402, whole genome shotgun sequence.
ACCESSION   DATIQC010000345 DATIQC010000000
VERSION     DATIQC010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623402"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..1085)
                     /gene="hemB"
                     /locus_tag="VLM17_07300"
     CDS             complement(93..1085)
                     /gene="hemB"
                     /locus_tag="VLM17_07300"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009594638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HSR65389.1"
                     /translation="MSYPYTRMRRMRRDEFSRRLMRETVLSADDLIYPVFVHELPGRA
                     PVGSMPGIERLSIDELLRVAEQASALRVPALALFPVTAPDAKSLTAEAAWDDEGLAPR
                     AIRALKERFPELGVITDVALDPYTSHGQDGLVDENGYVLNDETVEALVRQALCHARAG
                     ADVVAPSDMMDGRIGAIRTALEQDGFVHTRILAYSAKYASAFYGPFRDAVGSAGALGK
                     GDKYSYQMDPANTDEALREVALDLDEGADMVMVKPGMPYLDIVRRVKDEFGVPTFVYQ
                     VSGEYAMLRAAFQHGWLDERACVLEALTGIRRAGADGVLTYFALDAARWLRESA"
     gene            complement(1143..2318)
                     /locus_tag="VLM17_07305"
     CDS             complement(1143..2318)
                     /locus_tag="VLM17_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003490451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HSR65390.1"
                     /translation="MQRDNIAALPASSREGFHGGGVGGELAPLLHVAPLASPHARREA
                     GTELHLRGLSKHYPGVAALDGIDLDVGAGELVALLGPSGSGKTTLLRIIGGLLQPDTG
                     QVLFGAADATRLSLRERNVGFVFQHYALFRHMSVAENIAFGLRSRPWRRRPARTAIAR
                     RVDELLGLVQLPDHGRRYPEQLSGGQKQRVALARALAIDPSVLLLDEPFGALDAKVRV
                     ELRRWLRRLHSQTGQTTLFVTHDQEEALELADRIVVMREGRIEQVGTPEEVYRAPASA
                     FVYDFIGRANCLAGRVEDGVFRIDGGGALPAADAPAGAARLYVRPHDLALVARDAGLP
                     ARVLGVHRLAGRVTVELGLAGQERATELDLPAAPDTAVPAAGSEVGVQALRYRLYRE"
     gene            complement(2352..>2548)
                     /gene="cysW"
                     /locus_tag="VLM17_07310"
     CDS             complement(2352..>2548)
                     /gene="cysW"
                     /locus_tag="VLM17_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017158531.1"
                     /note="Part of the ABC transporter complex cysAWTP
                     involved in sulfate/thiosulfate import; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HSR65391.1"
                     /translation="VSGHIRGLTNTLPLHIEILYNEFNGTAAFAVASLLAGLALVTLV
                     LKFWLEARHGEALARSHKRH"
BASE COUNT          346 a          915 c          936 g          351 t
ORIGIN      
        1 tcagccgaca gcctgggctg ggcgcccgcc gtaccctagg cgaagcgcgg agagagcggg
       61 gcgtcggcgg atgccggcgc cccgtggcgc cttcaggcgc tttcgcgcag ccagcgcgcc
      121 gcgtcgagcg cgaagtaggt cagcacgccg tcggcgccgg cgcggcggat gccggtcagc
      181 gcctcgagca cgcaggcgcg ctcgtccagc cagccgtgct ggaacgccgc gcgcagcatc
      241 gcgtactcgc cgctgacctg gtagacgaag gtcggcaccc cgaactcgtc cttcacccgg
      301 cgcacgatgt cgaggtacgg catgcccggc ttgaccatca ccatgtcggc gccctcgtcg
      361 aggtcgagcg cgacctcgcg caacgcctcg tcggtgttgg ccgggtccat ctggtagctg
      421 tacttgtcgc ccttgccgag cgcgccggcc gacccgaccg cgtcgcggaa cggcccgtag
      481 aaggcggagg cgtacttcgc gctgtaggcg aggatgcggg tgtggacgaa gccgtcctgc
      541 tcgagcgcgg tgcggatcgc gccgatgcgc ccgtccatca tgtcgctggg cgcgaccacg
      601 tcggcgccgg cgcgcgcgtg gcacagcgcc tgccggacca gcgcctcgac ggtctcgtcg
      661 ttgagcacgt agccgttctc gtcgacgagg ccgtcctggc cgtgcgaggt atagggatcc
      721 agcgccacgt cggtgatcac cccgagctcg gggaagcgtt ccttcagcgc gcggatggcg
      781 cgcggcgcga ggccctcgtc gtcccacgcc gcttcggcgg tgagcgactt ggcgtccggc
      841 gcggtgaccg ggaacaacgc cagcgccgga acgcgcagcg cgctcgcctg ttccgccacg
      901 cgcagcagct cgtcgatcga cagccgctcg atccccggca tcgagccgac cggcgcgcgc
      961 ccgggcagct cgtgcacgaa caccgggtag atcaggtcat cggcgctcag caccgtctcg
     1021 cgcatcagcc ggcgcgagaa ctcgtcgcgg cgcatccgcc gcatgcgggt gtaggggtag
     1081 ctcatgcccg cattctacgc ccggccctcc gccggctttt ttgatccgcg tcagccccgg
     1141 tgtcactccc gatagaggcg gtagcgcaac gcctgcacgc cgacctcgct gccggcggcc
     1201 ggcaccgccg tgtccggcgc ggccggcagg tccagttcgg tcgcgcgctc ctgcccggcg
     1261 aggccgagtt cgacggtgac gcgcccggcg aggcggtgca cgcccagcac gcgcgcgggc
     1321 aggccggcgt cgcgcgcgac cagggcgagg tcgtgcggcc gcacgtacag acgcgcggca
     1381 ccggcgggcg cgtccgcggc cggcagtgcg ccgccgccgt cgatccggaa caccccgtcc
     1441 tcgacgcggc cggcgaggca gttggcgcgg ccgatgaagt cgtacacgaa ggccgacgcg
     1501 ggcgcgcggt agacctcctc cggcgtgccg acctgctcga tgcggccctc gcgcatcacc
     1561 acgatgcggt cggccagttc gagcgcttcc tcctggtcgt gggtgacgaa caacgtggtc
     1621 tgcccggtct gcgaatgcag gcgccgcagc cagcggcgca gttccacccg caccttggcg
     1681 tcgagcgcgc cgaagggttc gtcgagcagc agcacgctgg ggtcgatcgc cagcgcgcgc
     1741 gccaatgcca cccgctgctt ctgcccgccg gacagctgct cgggataacg cctgccgtgg
     1801 tcgggcagct ggaccaggcc gagcagttcg tcgacccgcc gcgcgatcgc cgtccgtgcg
     1861 gggcgccggc gccacggccg gctgcgcagg ccgaacgcga tgttctcggc gacggacatg
     1921 tggcggaaca gcgcgtagtg ctggaacacg aagccgacgt tgcgctcgcg caggctcagc
     1981 cgggtggcgt cggccgcgcc gaacagcacc tgccccgtgt ccggctgcag caggccgccg
     2041 atgatgcgca gcagggtggt cttgcccgaa ccggaggggc cgagcagcgc gaccagttcg
     2101 ccggcgccga cgtcgaggtc gatgccgtcg agcgcggcca cgcccggata gtgcttgctc
     2161 agcccgcgca ggtgcagctc cgtgccggcc tcgcggcggg cgtgtggcga ggcaagcggc
     2221 gcgacgtgca ggagcggcgc gagctccccg ccaacgccgc cgccgtggaa gccttcgcgg
     2281 gaagacgccg gcaatgccgc aatgttgtct cgttgcatgg tggtcgattc cggaagcgag
     2341 ggccggttgc gtcagtgccg cttgtgcgag cgggccagtg cctctccgtg tcgcgcttcg
     2401 agccagaact tcagcacgag cgtgaccagc gccaggcccg ccagcagcga ggcgaccgcg
     2461 aaggcggcgg tgccgttgaa ctcgttgtag aggatctcga tgtgcagcgg cagcgtgttg
     2521 gtcagtccgc ggatgtggcc ggagacca
//
LOCUS       DATIQC010000346         3379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_200168, whole genome shotgun sequence.
ACCESSION   DATIQC010000346 DATIQC010000000
VERSION     DATIQC010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200168"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..939)
                     /locus_tag="VLM17_07315"
     CDS             complement(<1..939)
                     /locus_tag="VLM17_07315"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HSR65392.1"
                     /translation="MGQSVVVLGAQWGDEGKGKIVDLLTQDIGAVVRFQGGHNAGHTL
                     VINGKKTVLHLIPSGILRPDALCLIGNGVVLSPAALRKEIAELEASGVEVRSRLKISP
                     ATPLIMPYHIALDQAREKAAGGNAIGTTGRGIGPAYEDKVARRGIRVADLHYPQQLAD
                     KLRGTMDYHTFVLAKYLGVDAVDYQKTLDEALAFGEYVEPMKSDVAGILHELRRQGRK
                     VLFEGAQGSLLDIDHGTYPYVTSSNTTIGGALAGAGVGADAIDYVLGIAKAYATRVGG
                     GPFPTELDDAVGQGLRDRGAEYGATTGRPRRCGWMDI"
     gene            complement(1132..1317)
                     /locus_tag="VLM17_07320"
     CDS             complement(1132..1317)
                     /locus_tag="VLM17_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 family protein"
                     /protein_id="HSR65393.1"
                     /translation="MNDLWSALCLVAVFEGLLLFAAPGAWKRAAEQLYAMPNLRLRAL
                     GGIVVVAGLLALHLLRS"
     gene            complement(1351..2214)
                     /gene="hflC"
                     /locus_tag="VLM17_07325"
     CDS             complement(1351..2214)
                     /gene="hflC"
                     /locus_tag="VLM17_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006383787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HSR65394.1"
                     /translation="MRTPAWITLAAAAVLALLGSVYVVDEGYSGLVLNLGKVVRSDVG
                     PGLHFKLPLVESARVFDRRLQVLSAEPERFITSDKLDVSVDFFALGRIEDLRRFYRAT
                     GGDEEREVSLLAPIIRDSLKNEINARTLQQVVSGDREAVVAKQIRTINNGAATLGVRI
                     VDIRIKRVDLPSDSNVLNSVYDRMRSQRQQAASQLRAEGVEQAQGIRAQADRDRAVIL
                     AEAERDAQKLRGEGDAEAARIYGEAASKDPGFYAFQRSLEAYRRSFADGNAVIVLDKS
                     DPFRQYMRSDR"
     gene            complement(2211..3296)
                     /gene="hflK"
                     /locus_tag="VLM17_07330"
     CDS             complement(2211..3296)
                     /gene="hflK"
                     /locus_tag="VLM17_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019186090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HSR65395.1"
                     /translation="MAWNIPGGSKDDRPPRRQGGSLVDRLLDPLRGLAGDGGIGRWIA
                     LAVVLWLVFNTFVLITEQQRGVVLRFGQFARVMQPGPNFKWPWPVERVYKVNATQSNS
                     YSDKVPVLTRDLNMVSVDINVQYKIDDPATFLFASRKPEDVLKEAAQSAVREAVGRSD
                     MDTVLFARGGLGTIVKERLQKALREYHTGLAVTELNLPDARYPDEVKDAFDEAQRASQ
                     DKNTSINQAEAYAKQVVPEARGKATSVRTEAEGYRTAAIARATGDAQRFSLLLEQYKA
                     APEVTRKRLWLETVQDVLAENRKVVGADGRQLIYVPMPVAPASNANAGAAPQVAAPDL
                     VAPPVTATPDTRPERSARPSGREEPSR"
BASE COUNT          447 a         1172 c         1223 g          537 t
ORIGIN      
        1 gatgtccatc cagccgcagc ggcgcgggcg gccggtggtg gcgccgtatt cggcgccgcg
       61 gtcgcgcagg ccctggccga cggcgtcgtc gagttcggtc gggaacgggc cgccaccgac
      121 acgcgtcgcg taggccttgg cgatgccgag cacgtagtcg atcgcatcgg ccccgacacc
      181 ggcgccggcg agcgcaccgc cgatggtggt gttggacgag gtgacgtagg gataggtgcc
      241 gtggtcgatg tcgagcagcg agccctgcgc gccctcgaac aggaccttgc ggccctgccg
      301 gcgcagctcg tgcaggatgc cggcgacgtc cgacttcatc ggctcgacgt actcgccgaa
      361 cgcgagcgcc tcgtccagcg tcttctggta gtcgaccgcg tcgacgccga ggtacttcgc
      421 cagcacgaag gtgtggtagt ccatggtgcc gcgcagcttg tcggcgagct gctgcgggta
      481 gtgcaggtcg gccacgcgga tgccgcggcg cgcgaccttg tcctcgtacg ccgggccgat
      541 gccgcggccg gtggtgccga tcgcgttgcc gccggcggcc ttctcgcgcg cctggtccag
      601 cgcgatgtgg tacggcatga tcagcggcgt cgccgggctg atcttcaggc gcgagcgcac
      661 ctccacgccg ctggcctcga gctcggcgat ttccttccgc agcgcggccg ggctgagcac
      721 cacgccgttg ccgatcaggc acagcgcgtc ggggcgcagg atgccggagg ggatcaggtg
      781 caggacggtc ttcttgccgt tgatgaccag cgtgtggccg gcgttgtggc cgccctggaa
      841 gcgcacgacc gcgccgatgt cctgggtcag caggtcgacg atcttgccct tgccttcatc
      901 gccccactgg gcacccaaca cgacgactga ctgacccatg atcctgctcc tgctgctttt
      961 cgtaggagcg gcttatcgcc gcgagcttct gtgccgcgcc tgcccggccg gatgaaacgc
     1021 gcggcgggag ccgctccggg aagcacgcac gaaaaaagcc ggaaggtcgc cccccggctt
     1081 ttgtgcatta tccgggtttc cgggcgacgg ggccagcccg cccgcccagg ctcagctgcg
     1141 cagcaggtgc agggccagca gcccggccac caccacgatc ccgccgagcg cgcgcaggcg
     1201 caggttgggc atcgcgtaca gctgctcggc cgcgcgcttc cacgcaccgg gggcggcgaa
     1261 cagcaacagg ccctcgaaca cggccaccag gcacagggcc gaccacaggt cgttcatcgg
     1321 cgggacttcg gcagggggcg accgcgatcc tcagcggtcg ctgcgcatgt actgccggaa
     1381 ggggtcgctc ttgtcgagca cgatcaccgc gttgccatcg gcgaaggacc ggcggtaggc
     1441 ctcgaggctg cgctggaagg cgtagaagcc cgggtccttc gacgccgcct cgccatagat
     1501 ccgcgctgcc tccgcgtcgc cttcgccgcg cagcttctgc gcatcgcgct cggcctcggc
     1561 gaggatcacc gcgcggtcgc gatcggcctg cgcgcggatg ccctgcgcct gctccacgcc
     1621 ctcggcgcgc agctggctgg cggcctgctg gcgctgcgaa cgcatgcggt cgtacaccga
     1681 gttcagcacg ttgctgtcgc tcggcaggtc gacgcgcttg atgcggatgt cgacgatgcg
     1741 cacgccgagc gtggccgcgc cgttgttgat cgtccggatc tgcttggcga ccacggcctc
     1801 gcggtcgccg gacaccacct gctgcagcgt gcgcgcattg atctcgttct tcagcgaatc
     1861 gcggatgatc ggcgcgagga ggctcacctc gcgctcctcg tcgccgccgg tggcgcggta
     1921 gaagcggcgc aggtcctcga tccggccgag cgcgaagaag tccacgctga cgtcgagctt
     1981 gtcgctggtg atgaagcgct cgggctcggc gctgagcacc tgcaggcggc ggtcgaacac
     2041 gcgcgcgctt tcgaccagcg gcagcttgaa gtgcaggccc gggccgacgt cgctgcgcac
     2101 gaccttgccg aggttgagga cgaggccgct gtagccctcg tcgacgacgt acaccgagcc
     2161 gagcagggcg agcaccgccg cggcggccag ggtgatccag gcgggcgtcc tcatcgcgac
     2221 ggctcctcgc ggccgctcgg gcgcgcactg cgttcggggc gggtgtccgg cgtcgcggtc
     2281 accggcggag cgaccaggtc gggggcggcc acctgcggcg cggcgcccgc attcgcgttg
     2341 gatgccggtg cgaccggcat cggcacgtag atcagctggc ggccgtcggc gccgaccacc
     2401 ttgcggttct cggccagcac gtcctgcacg gtctccagcc acaggcgctt gcgggtgacc
     2461 tcgggcgcgg ccttgtactg ctcgagcagc agcgagaagc gctgcgcgtc gccggtggcg
     2521 cgcgcgatcg cggccgtgcg gtagccctcg gcttcggtgc gcacgctcgt cgccttgccg
     2581 cgcgcctcgg gcaccacctg cttggcgtag gcctcggcct ggttgatcga ggtgttcttg
     2641 tcctggctgg cgcgctgggc ctcgtcgaag gcgtccttga cctcgtcggg gtagcgcgcg
     2701 tcgggcaggt tgagctcggt gacggccagg cccgtgtggt actcgcgcag cgccttctgc
     2761 aggcgctcct tgacgatcgt gcccagcccg ccgcgcgcga acagcacggt gtccatgtcg
     2821 gagcggccga ccgcttcgcg caccgcgctc tgcgcggctt ccttcagcac gtcctcgggc
     2881 ttgcgcgagg cgaacaggaa cgtggccggg tcgtcgatct tgtactgcac gttgatgtcg
     2941 acgctgacca tgttgaggtc gcgggtgagc accgggacct tgtcgctgta cgaattgctc
     3001 tgggtggcgt tgaccttgta gacgcgctcg accggccacg gccacttgaa gttcggcccg
     3061 ggctgcatca cccgcgcgaa ctggccgaag cgcaggacca cgccgcgctg ctgctcggtg
     3121 atcagcacga aggtgttgaa gaccagccac agcaccacgg cgagggcgat ccagcggccg
     3181 atgccgccgt caccggcgag gccgcgcagc ggatcgagca ggcggtcgac caggctgccg
     3241 ccctgtcgcc gcggggggcg atcgtccttg gacccgccgg ggatgttcca ggccatgcct
     3301 gctccgtgtt gcccgcgcgc ggcggatggt gaccagtggc gccttcacgg gcgcatgaaa
     3361 gacgaccgcg agcgagcgg
//
LOCUS       DATIQC010000347         8993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_93973, whole genome shotgun sequence.
ACCESSION   DATIQC010000347 DATIQC010000000
VERSION     DATIQC010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8993
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93973"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1864)
                     /locus_tag="VLM17_07335"
     CDS             complement(<1..1864)
                     /locus_tag="VLM17_07335"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNVR domain-containing protein"
                     /protein_id="HSR65396.1"
                     /translation="MATHLTPKLPTYAAPPAYAEPRNDEIDLHTLVAMLGDHKKLILL
                     GTAVFCLLSILYVILATPKYQATAVVQVERKTPTVPGLPPNIATEDSPGDTAAATEIQ
                     LMTSRQVLGQALQDLHLDIQAQPERFPVLGSFIARHFSPDAPGEVARPLFGLARYGWG
                     GEKIEIGRLDVPAPLVDAPLALVAGEGGRYVLEDENGGTLVQGVVGQPAAANGISMLV
                     STLRANPGAKFDVTKLNTLAIIDKLRQDIDAAEQGRDSGVVALSYSNTDPLVAQRVLE
                     KITDAYVHQNVARNSAEAAKRLEFVKEQLPKVRDELAKAQAALNAFQTRTQTMDVGVQ
                     NQSLLNQSVAIDTAIRQLRIQQADLASRFTPNHPQYRALLAQIGAFEREKGGLQGQLR
                     QLPDTQQGLFRLTRDVDVTNQTYRNLMDQAQQLDIARASAIGNARVVDPAAVNMEDPA
                     WPKPLPVVVGGTAVGAFLMIVFVMLRQMLNRGVEDPVDIELLGLPVYASIPYSERGRE
                     ITTRPGRYQGDQRLLALNAPTDMAMEALRSLRTSLHFGRFRTRNNLLMITAPSPGVGK
                     TFVCANLAVTMAQAGQKVLLIDADMRRGTLHQALGVRSEGGLSELISGQIPLEEA"
     gene            complement(1976..4252)
                     /locus_tag="VLM17_07340"
     CDS             complement(1976..4252)
                     /locus_tag="VLM17_07340"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HSR65397.1"
                     /translation="MDDAKLVAASAIALAVTLFAIFSLRPVARRLGLVDRPDERKRHR
                     GRVPLIGGLCFFLGMLVGLVYLGYIDRLVAALLVPAALIVMTGLVDDLHSLSVRSRLV
                     VQGCVVFIVIAATGIYLDSAGRVLGSNELRFGLLGIPLTIFAVIGLINAFNMLDGIDG
                     LAASQAMASIAAILLYAHSDLAPFGTLLLLQVLFAALVPYLCVNLGWPDGRKIFMGDA
                     GSTLIGFLLGWSLIFLSHRGVDRIAPVDALWCVALPVMDTLAVMARRMRDGRSPFKPD
                     RQHLHHLLLEAGCTPRQVLLLMLGASAVLAAFGAALRGLPQAVSLVMFCAVLSAYVLR
                     FDRILAPLHAWRARAALAEAAARGTSSPAKVRALCVMATPADAAQIAPIARQLAADGR
                     FESRICVAGGEEHCPANLLSLFDLAADIRLDDSDPGVDATGATSQALDGMKRVLADFR
                     PDVVLVPGYTPAAAATTLAAFYQQVPVVCIEPESARAAIPLLHQEADRKITCTLASLH
                     LAPHEAGGRGLLAEGVPPERIVVTGNTAVDTLRAASARMLSDPSLRFELGERLGFLRT
                     GSPLLLVADPRITNRGFEALGRALRRLAATRPELDIVYTAEPGGESAGPVGELMRTDP
                     NIHSVPRGDVLAFAYLLGRAHLVLAGCGETASDLAALDHPVLLVQGDAAIAEEGAPRQ
                     VPVQEDAIVAEVARLLADPRARESLRASTHDADAAPCQRVAETLASLKDGAPTPGPQA
                     APAGVPLCSAVEDLREAS"
     gene            complement(4488..4922)
                     /locus_tag="VLM17_07345"
     CDS             complement(4488..4922)
                     /locus_tag="VLM17_07345"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HSR65398.1"
                     /translation="MIQRILIVCVGNICRSPMAEALLRARLHGREVAIESAGLAPLVG
                     RPIDPEAAAVLAANGLSADAHAARRITPELISAADLVLAMDPRQLSAIRAIAPQARGK
                     TFLLGKWIGDADVPDPYGQPRAMFEQAYALIERAVEGWLARL"
     gene            complement(5008..5083)
                     /locus_tag="VLM17_07350"
     tRNA            complement(5008..5083)
                     /locus_tag="VLM17_07350"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5048..5050),aa:Thr,seq:cgt)
     gene            complement(5119..6078)
                     /gene="ispH"
                     /locus_tag="VLM17_07355"
                     /gene_synonym="lytB"
     CDS             complement(5119..6078)
                     /gene="ispH"
                     /locus_tag="VLM17_07355"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HSR65399.1"
                     /translation="MDILLANPRGFCAGVDRAIEIVKRALETLGAPIYVRHEVVHNRY
                     VVDDLRHRGAVFVEELDEVPDGATVIFSAHGVSQAVRVEAARRGLKVFDATCPLVTKV
                     HLEVARQCRAGRDMVLIGHAGHPEVEGTMGQWNAQAGPAANGKIHLVEDLDDVAALRL
                     DQPENCAYTTQTTLSVDDTRGIIRALKQRFPAIQGPRNDDICYATQNRQDAVRELARQ
                     CDLVLVVGSPNSSNSNRLRELAEREGVEAHLIDGAVEIDPRWVQGRRHIGVSAGASAP
                     EVLVRGVIERLHELGAAGVRELSGEPEDMVFALPRELRVQLVD"
     gene            complement(6087..6590)
                     /gene="lspA"
                     /locus_tag="VLM17_07360"
     CDS             complement(6087..6590)
                     /gene="lspA"
                     /locus_tag="VLM17_07360"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HSR65400.1"
                     /translation="MTTSPRPNALSWLGVSALVIALDQLSKAWVLAHLRGGQPVPVID
                     GFWNWYLTYNTGAAFSFLSDAGGWQKYLFMVLALVVSATLARWLARTPRGDWKTALPF
                     ALVIGGALGNLLDRLQHGHVIDFIQWYWRDHYWPAFNIADSAIVVGAVALALFALRQG
                     KPAGDAR"
     gene            complement(6721..>8993)
                     /gene="ileS"
                     /locus_tag="VLM17_07365"
     CDS             complement(6721..>8993)
                     /gene="ileS"
                     /locus_tag="VLM17_07365"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005928804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HSR65401.1"
                     /translation="EYHDKKSPAVDVAYRAKDPARLAAAFEVPAVEGVDVAVQIWTTT
                     PWTLPASLAVTLGAELDYVLVEGPPRDGHRQWLVLAEPLAARALQRYGVDEVVVLGRA
                     TGAELEGLRLQHPFYAEREIPLLLGEHVSAEEGTGAVHTAPGHGQEDFVVGQRYGLIE
                     QYTAAQLNPVDGKGVYLPSTPPARVPGGEDVALAGLHIWKANDAIVEVLRGNGALLAF
                     SVLEHSYPHCWRHKTPVAFRATPQWFISMEQAGLRRDALAAITKVEWVPDWGEARIAG
                     MVEGRPDWTISRQRTWGVPIALFVGRESGEPHPRSPDLMRQVAERVERDGVDAWYALD
                     AGDLLGADAPRYDKVNDILDVWFDSGVTHYCVLAQRPQDGLRKPADLYLEGSDQHRGW
                     FQSSLLTGVAMDGAAPFLQVLTHGFAVDAQGRKMSKSIGNVIEPQKVIDAMGADVLRL
                     WIAATDYRNEMSVSDEILRRSGDAYRRIRNTARFLLGNLHGFEPARDLRPLDDMVALD
                     RWIVHRAWELQQKIAEAYARYDFAEIVQALGNFCSVELGSLYLDVTKDRLYTMPEDSR
                     GRRSAQSAMYRIAEAFVRWIAPILSFTADEMWGYLPRATGQGERPANVLFATWYDGLA
                     PLGEDAALDAEDFERLLALRDQVAKVLEPMRAGGEIGAALEAEIALGCGVADQNWLAP
                     RVDELRFLLISGDVALVADDAAKETTVVATRTTKPKCVRCWHHRADVGGHAEHPLLCG
                     RCVGNLEGPGEDRRWF"
BASE COUNT         1324 a         3107 c         3258 g         1304 t
ORIGIN      
        1 ccgcctcttc cagcgggatc tgcccggaga tcaactcgga caggccgccc tcggagcgca
       61 cgcccagcgc ctggtgcaac gtgccgcgac gcatgtcggc gtcgatcagc agcaccttct
      121 gcccggcctg cgccatggtc accgcgaggt tggcgcagac gaaggtcttg cccacgcccg
      181 ggctgggcgc ggtgatcatc agcaggttgt tgcgcgtgcg gaagcgcccg aagtgcaggc
      241 tggtgcgcag gctgcgcagc gcttccatcg ccatgtccgt cggcgcgttc agggcgagca
      301 ggcgctggtc gccctggtaa cggccgggcc gcgtggtgat ctcgcgcccg cgctcgctgt
      361 acgggatcga ggcgtagacc ggcaggccca gcagttcgat gtccaccgga tcctcgacgc
      421 cgcggttgag catctgccgc agcatcacga acacgatcat caggaacgcg ccgaccgccg
      481 tgccgccgac caccaccggc agcggcttcg gccacgccgg gtcttccatg ttgacggccg
      541 cggggtcgac cacgcgcgcg ttgccgatgg cgctggcgcg ggcgatgtcc agctgctgcg
      601 cctggtccat caggttgcgg taggtctggt tggtgacgtc gacgtcgcgg gtgagccgga
      661 acaggccctg ctgggtgtcc ggaagctgcc gcagctggcc ctgcagcccg cccttctcgc
      721 gctcgaacgc gccgatctgc gcgagcagcg cgcggtattg cgggtggttg ggcgtgaagc
      781 ggctggccag gtcggcctgc tggatgcgca gctggcggat cgcggtgtcg atcgccacgc
      841 tctggttgag cagggactgg ttctgcacgc cgacgtccat ggtctgcgtg cgggtctgga
      901 aggcgttgag cgcggcctgc gccttggcca gttcgtcgcg caccttcggc agctgctcct
      961 tgacgaattc caggcgcttg gccgcctcgg ccgagttgcg ggccacgttc tggtgcacgt
     1021 aggcgtcggt gatcttctcg agcacccgct gcgccaccag cggatcggtg ttggagtagc
     1081 tgagcgcgac gacgcccgag tcgcgtccct gctcggccgc atcgatgtcc tgccggagct
     1141 tgtcgatgat cgcgagcgtg ttgagcttgg tcacgtcgaa cttcgcgccc gggttcgcgc
     1201 gcagcgtgct gaccagcatg ctgatgccgt tggcggcggc gggctggccg accacgccct
     1261 gcaccagcgt gccgccattc tcgtcctcga gcacgtagcg gccgccctcg cccgccacca
     1321 gcgccagcgg cgcgtcgacc agcggcgcag gcacgtcgag gcggccgatc tcgatcttct
     1381 cgccgcccca gccatagcgc gccaggccga acagcgggcg ggccacttcg cccggggcat
     1441 cggggctgaa gtgccgcgcg atgaagctgc ccagcaccgg gaagcgctcc ggctgcgcct
     1501 ggatgtccag gtgcaggtcc tggagcgcct ggccgagcac ctggcgcgag gtcatcagct
     1561 ggatctcggt cgcggcggcg gtatcgccgg gcgaatcctc cgtcgcgatg ttgggcggca
     1621 ggcccggcac cgtcggcgtc ttgcgttcga cctgcaccac cgcggtggcc tggtacttgg
     1681 gcgtcgcgag gatcacgtag aggatgctga gcaggcagaa caccgcggtg ccgagcagga
     1741 tcagcttctt gtggtcgccg agcatcgcga ccagcgtgtg caggtcgatc tcgtcgttgc
     1801 gcggctcggc gtaggccggc ggcgccgcgt aggtcggaag cttgggggtc aggtgcgtgg
     1861 ccatgggtcg ctcacctcgg gcagaaggga agtcgttggc gccgcgggcg gcggcgcgtt
     1921 gcggaaggga atcggcggtc ttgcggggcg agggacgcgg gcggtgggac gcaggtcatg
     1981 acgcttcgcg gagatcctcg acggcggagc acaacggcac gccggctggc gcggcctgcg
     2041 gcccgggcgt gggtgccccg tccttcaggc tcgccagcgt ttcggcgaca cgttggcacg
     2101 gggcggcgtc agcatcgtgt gtagacgctc gcagcgactc gcgtgcccgt gggtccgcca
     2161 gcaggcgcgc gacctcggcg acgatggcgt cctcctgcac gggcacctgg cgcggcgcgc
     2221 cttcttcggc gatggcggca tcgccctgca ccagcaggac cggatggtcg agcgcggcga
     2281 ggtcggacgc ggtctcgccg cagcccgcca gcaccaggtg ggcgcggccc agcaggtagg
     2341 cgaacgcaag cacgtcgccg cgcggcacgg aatggatgtt gggatcggtg cgcatcagct
     2401 cgccgaccgg cccggccgat tcaccgccgg gttcggcggt gtagacgatg tcgagttcgg
     2461 gccgagtggc ggccaggcgg cgcagcgcgc ggcccagtgc ctcgaagccc cggttggtga
     2521 tgcgtgggtc ggccaccagc agcagcgggc tgccggtgcg caggaaaccc agccgttcgc
     2581 cgagctcgaa gcgcaacgag gggtcggaca gcatgcgcgc gctggccgcg cgcagggtgt
     2641 cgaccgcggt gttgccggtg acgacgatgc gttcgggcgg cacgccttcg gcgagcaggc
     2701 cacggccacc ggcttcgtgt ggcgccaagt gcagcgaggc gagcgtgcag gtgatcttgc
     2761 ggtcggcttc ctggtgcagc agcgggatcg cggcgcgcgc gctttcgggc tcgatgcaca
     2821 ccaccggcac ctgctggtag aaggccgcca gcgtggtggc cgcagcggcc ggcgtgtagc
     2881 cgggcaccag caccacgtcg gggcggaaat cggcgagcac gcgcttcatg ccatcgagcg
     2941 cctgcgacgt ggcgccggtg gcgtccacgc ccggatcgct gtcgtccagg cggatgtcgg
     3001 ccgcgaggtc gaacaacgac aacaggttgg ccgggcaatg ctcttccccg ccggccacgc
     3061 agatgcgcga ctcgaagcgg ccgtcggcgg cgagctggcg cgcgatcggg gcgatctgcg
     3121 cggcgtcggc cggcgtggcc atcacgcaca gcgcgcgcac cttcgccggc gacgacgtgc
     3181 cgcgcgcggc cgcctccgcc agcgccgcgc gcgcgcgcca cgcatgcagc ggcgcgagga
     3241 tgcggtcgaa ccgcagcacg taggccgaga ggaccgcgca gaacatcacc aggctgacgg
     3301 cctgcggcag gccgcgcagc gcggcaccga acgcggccag caccgcgctc gcgcccagca
     3361 tcagcagcag cacctgacgc ggcgtgcagc cggcttcgag cagcaggtgg tgcaggtgct
     3421 ggcgatcggg cttgaacggc gagcggccat cgcgcatgcg ccgcgccatc accgccagcg
     3481 tgtccatcac cggcagcgcc acgcaccaca acgcgtccac cggggcgatc cgatcgacgc
     3541 cgcgatggct gaggaagatc aggctccagc cgagcaggaa gccgatcagc gtgctgccgg
     3601 cgtcgcccat gaagatcttg cggccgtccg gccagccgag gttgacgcac aggtagggca
     3661 ccagcgcggc gaacagcacc tgcagcagca gcagcgtccc gaacggcgcc aggtcggaat
     3721 gcgcatacag caggatcgcc gcgatgctgg ccatcgcctg gctcgcggcc aggccgtcga
     3781 tgccgtcgag catgttgaat gcgttgatca gcccgatcac cgcgaagatc gtcagcggga
     3841 tgccgaggag gccgaagcgc agttcattgg agccgaggac gcggccggcg ctgtcgaggt
     3901 agatgccggt cgcggcgatg acgatgaaga cgacgcagcc ctgcacgacc aggcgcgagc
     3961 gcacgctcag cgaatggagg tcgtcgacca ggccggtcat cacgatcagc gccgccggca
     4021 ccagcaacgc ggcgacgagc cggtcgatgt agccgaggta gacgaggccg accagcatgc
     4081 cgaggaaaaa acacaggccg ccgatcagcg gtacgcggcc ccggtggcgc ttgcgctcgt
     4141 cgggccggtc gaccagcccg agccgccgcg cgaccgggcg cagcgaaaag atcgcgaaca
     4201 gggtgacggc caacgcgatc gcgctcgcgg ccaccagctt tgcatcatcc atgtatgcct
     4261 ctgcgatggg cttgagccgt ccggtccggt caggccgggg cgggaacacc ggcgcgcgca
     4321 gggcgcacca tcagcacgtc gcgcaaaagc taacgatgcg aggttgatga aaggatgaaa
     4381 ttttaaggtt ctggtaaacc gcgcgtttgg aaaccagaaa gatttcacgc gacggaagcg
     4441 ccatgcgcac tggccggaaa ttggcccgtg tcgcgttgcg cccgtattca gagacgggcc
     4501 agccagcctt ccacggcgcg ctctatgagc gcataggcct gctcgaacat cgcgcgcggc
     4561 tggccgtacg gatcgggcac gtcggcatcg ccgatccact tgccgagcag gaaggtcttg
     4621 ccgcgcgcct gcggcgcgat cgcccggatc gcggacagct ggcgcggatc catggccagc
     4681 acgaggtcgg cggcggagat cagttcgggc gtgatccggc gcgcggcgtg cgcgtcggcc
     4741 gacagcccgt tcgccgccag caccgcggcc gcctcggggt cgatcggcct gccgaccagc
     4801 ggcgccagcc ccgccgattc gatggccacc tcgcggccat gcaggcgcgc gcgcagcagc
     4861 gcctccgcca tcgggctgcg gcagatgttg ccgacacaga caatgaggat gcgctggatc
     4921 acgtcgcggg ccggttccgg gcggccagct tgccatccgc ggcgccaaaa tgcggaaggc
     4981 ccgcagcgcg ggcctcccgg gtcaagctgg tgccggaaat aggattcgaa cctacgaccc
     5041 catcattacg aatgacgtgc tctaccagct gagctattcc ggcgtgggcg gcaagtgtag
     5101 gtagcggccg ggggcgggtc aatcgaccag ctggacgcgc agttcgcgag gcagggcgaa
     5161 gaccatgtcc tccggctcgc cggacagttc gcgcacgccg gcggcgccga gttcgtgcag
     5221 ccgctcgatg acgccgcgca ccagcacctc gggcgccgaa gcgccggcgc tgacgccgat
     5281 gtggcggcga ccctgtaccc agcgcgggtc gatctcgacc gcgccgtcga tcaggtgcgc
     5341 ctcgacgccc tcgcgctcgg ccagctcgcg caggcggttg gagttggagc tgttgggcga
     5401 accgaccacc agcacgaggt cgcactggcg ggcgagctcg cgcaccgcgt cctggcggtt
     5461 ctgggtggcg tagcagatgt cgtcgttgcg cggcccctgg atcgccggga aacgctgctt
     5521 cagcgcgcgg atgatcccgc gcgtgtcgtc gaccgacagc gtggtctggg tggtgtaggc
     5581 gcagttttcc ggctggtcga ggcggagcgc ggcgacgtcg tcgaggtcct cgaccaggtg
     5641 gattttccca ttggcggccg gcccggcctg cgcgttccac tggcccatgg tgccctcgac
     5701 ctccggatgc ccggcatggc cgatcagcac catgtcgcgg ccggcgcggc actggcgcgc
     5761 gacctccagg tgcaccttgg tcaccagcgg gcaggtcgcg tcgaacacct tcagcccgcg
     5821 ccgcgccgct tccacccgca ccgcctgcga gacgccgtgc gcgctgaaga tcaccgtcgc
     5881 gccgtcgggc acttcgtcca gttcctcgac gaacaccgca ccgcgatggc gcaggtcgtc
     5941 caccacgtag cggttgtgca cgacctcgtg gcgcacgtag atcggcgcgc cgagcgtctc
     6001 cagcgcgcgc ttgacgatct cgatcgcgcg gtcgacgccg gcgcagaagc cacgcggatt
     6061 ggccagcagg atgtccatgc gggggattat cgcgcgtcgc ccgccggctt gccttgccgc
     6121 agggcgaaca gggccagcgc gacggcgccg accacgatcg ccgaatcggc gatgttgaag
     6181 gccggccagt agtggtcgcg ccagtaccac tggatgaagt cgatgacatg cccgtgctgc
     6241 agccggtcga gcaggttgcc gagcgcgccc ccgatcacca gcgcgaacgg cagcgcggtc
     6301 ttccagtcgc ctcgcggggt cctcgccagc cagcgcgcga gcgtcgcgct gacgaccagg
     6361 gcgagcacca tgaacaggta tttctgccag ccgccggcat cgctcaggaa gctgaaggcc
     6421 gcgccggtgt tgtaggtgag gtaccagttc cagaagccgt cgatcaccgg caccggctgt
     6481 cctccgcgca ggtgcgccag cacccacgcc ttgctcagct ggtcgagcgc gatgaccagc
     6541 gcggagacgc cgagccagga aagcgcgttg gggcgggggg aagtcgtcat gcgatgccta
     6601 ctggtcgttg ccggggaagc ggggttgttg gcggccgtat cgccggccgt ccccaggcct
     6661 cgtcgcgatg cggttttcga aaaggcgtcg tcccgctcgc gcggggatga cggccaggga
     6721 tcagaaccac cggcgatcct cgcccggccc ttcgaggttg cccacgcagc gcccgcagag
     6781 cagcggatgc tccgcgtggc cgcccacgtc cgcccggtgg tgccagcagc gcacgcactt
     6841 gggcttggtg gtccgggtgg cgacgaccgt cgtctccttc gccgcatcgt cggccaccag
     6901 cgccacgtcg ccgctgatca gcaggaagcg cagttcgtcg acccgcggtg ccagccagtt
     6961 ctggtcggcg accccgcacc cgagcgcgat ttccgcctcc agtgccgcgc cgatctcgcc
     7021 gccggcgcgc atcggctcga ggaccttggc gacctggtcg cggagggcga gcaggcgctc
     7081 gaagtcctcc gcgtccagcg cggcgtcctc gccgagcggc gcgaggccgt cgtaccaggt
     7141 ggcgaacagc acgttcgccg ggcgctcgcc ctgccccgtc gcccgcggca ggtagcccca
     7201 catctcgtcg gcggtgaagc tcaggatcgg cgcgatccag cgcacgaacg cctccgcgat
     7261 gcggtacatc gccgactgcg ccgagcggcg cccgcgcgaa tcctccggca tcgtgtacag
     7321 ccggtccttg gtcacgtcca ggtacagcga accgagttcg acgctgcaga agttgccgag
     7381 cgcctgcacg atctcggcga agtcgtagcg cgcgtaggcc tccgcgatct tctgctgcag
     7441 ttcccaggcg cggtgcacga tccagcggtc gagcgcgacc atgtcgtcga gcgggcgcag
     7501 gtcgcgcgcc ggctcgaagc cgtgcaggtt gccgagcagg aagcgggcgg tgttgcggat
     7561 gcgacggtag gcgtcgccgc tgcgcctgag gatctcgtcc gagacggaca tctcgttgcg
     7621 gtagtccgtc gccgcgatcc acaggcgcag cacgtccgcg cccatcgcgt cgatgacctt
     7681 ctgcggctcg atgacgttgc cgatcgactt cgacatcttg cggccctgcg cgtcgaccgc
     7741 gaagccgtgc gtgagcacct gcaggaacgg cgcggcgcca tccatcgcga cgccggtcag
     7801 cagggacgac tggaaccagc cgcggtgctg gtcggagcct tccaggtaga ggtcggccgg
     7861 cttgcgcagc ccgtcctgcg ggcgctgcgc gagcacgcag taatgggtca cgccggagtc
     7921 gaaccagacg tcgaggatgt cgttgacctt gtcgtagcgc ggcgcatcgg cgccgagcag
     7981 gtcgcccgca tcgagcgcgt accaggcatc gacgccgtcg cgttcgacgc gttcggcgac
     8041 ctggcgcatc aggtcgggcg agcggggatg cggctcgccg ctctcgcggc cgacgaacag
     8101 cgcgatcggc acgccccagg tgcgctggcg cgagatggtc cagtcggggc gcccctcgac
     8161 catgccggcg atccgggcct cgccccagtc gggcacccac tccaccttgg tgatcgcggc
     8221 gagcgcgtcg cggcgcagcc cggcctgctc catcgagatg aaccactggg gggtggcgcg
     8281 gaacgccacc ggcgtcttgt gccgccagca gtgcggatag ctgtgctcca gcacggaaaa
     8341 ggcgaggagc gcgccgttgc cgcgcagcac ctcgacgatg gcgtcgttgg ccttccagat
     8401 gtgcaggccg gcaagcgcga cgtcctcgcc tcccgggacc cgggccggcg gcgtggacgg
     8461 caggtacacg cccttgccat cgaccggatt gagctgcgct gccgtgtact gctcgatcag
     8521 cccgtagcgc tggccgacca cgaagtcctc ctggccatgg cccggcgcgg tgtgcaccgc
     8581 gccggtgccc tcttccgccg acacgtgctc gccgagcagc agcgggattt cgcgctccgc
     8641 atagaacggg tgctgcagcc tcagcccttc gagctcggcg ccggtggcac ggccgagcac
     8701 gaccacctcg tcgacgccgt agcgctgcag cgcgcgcgcg gccagcggct cggccagcac
     8761 cagccactgg cggtggccgt cgcgcggcgg gccttccacc agcacgtagt cgagctcggc
     8821 gccgagggtg accgccaggc ttgccggcag cgtccacggc gtggtcgtcc agatctgcac
     8881 ggcgacatcg acgccctcca ccgccggcac ttcgaaggcg gcggcgagcc tggccggatc
     8941 cttcgcgcga taggcgacgt cgaccgcggg cgatttcttg tcgtggtact cga
//
LOCUS       DATIQC010000348         3183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_517417, whole genome shotgun sequence.
ACCESSION   DATIQC010000348 DATIQC010000000
VERSION     DATIQC010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3183
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517417"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /locus_tag="VLM17_07370"
     CDS             <1..543
                     /locus_tag="VLM17_07370"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HSR65402.1"
                     /translation="ELDAAARVAGALGAVAHKTVHVDLRSIGGSALTDDIDVPEAGGA
                     GIPVTYVPARNTIMLSLALGWAEVLGASDVFCGVNAVDYSGYPDCRPEFIQAFERLAN
                     VATKAGVEGAGFRIHAPLLRLGKADIVREGLRLGVDFAQTVSCYQADDAGRACGHCDA
                     CRLRTQGFAAAGVADPTRYR"
     gene            642..717
                     /locus_tag="VLM17_07375"
     tRNA            642..717
                     /locus_tag="VLM17_07375"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:675..677,aa:Lys,seq:ttt)
     gene            937..1263
                     /locus_tag="VLM17_07380"
     CDS             937..1263
                     /locus_tag="VLM17_07380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65403.1"
                     /translation="MYRLGNIHLRLEHVTMVFPVHPLLGQEGVHGFDVMVGGYLHTAK
                     YLDGEAARRAHAALLAALEPAVAVPEAAPVEVATPAPMAPAPSVAAKGAGKRKAGKPD
                     APRSRH"
     gene            complement(1277..3094)
                     /gene="recQ"
                     /locus_tag="VLM17_07385"
     CDS             complement(1277..3094)
                     /gene="recQ"
                     /locus_tag="VLM17_07385"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HSR65404.1"
                     /translation="MTVRATGIDQTLAEVFGYPEFRPHQREIVAHVAAGGDALVLMPT
                     GGGKSLCYQLPALLREGTAIVVSPLIALMQDQVEALRQLGVRAAFLNSTLSAGEADTV
                     ERQLRTGELDLLYVAPERLLTPRFLSLLERSRPALFAIDEAHCVSQWGHDFRPEYREL
                     TLLHERWPEVPRIALTATADAPTRNEIVERLALHEARQFVSSFDRPNIRYTVVAKQDS
                     RRQLLDFLAGHRGDSGIVYCLSRRKVESTADYLAERGIVALPYHAGLDAGVRAAHQRR
                     FLREDGIVMVATIAFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEPAEAWLA
                     YGLGDAVLLGRMIEEGEAGEDRKRLERRKLDALVGYCESTGCRRQTLLAYFGEDHPGA
                     CGHCDNCLVPPRSWDGTEAARKALSCVYRTGQRFGAAHLVDVLRGADTAKVRQFGHDA
                     LSTYGIGADLDARQWRSVFRQLVAMGLLEADVEGHGALRFTAASASVLTGGRRLSLRA
                     DAAGRKDRRGRDAAAGTTAAADLPADALACFDALRAWRAEVARTQNVPAYVIFHDATL
                     RAIARARPADLAALARISGVGDRKLERYGQPLLEALATS"
BASE COUNT          422 a         1137 c         1170 g          454 t
ORIGIN      
        1 gaactggacg cggcggcgcg cgtggcgggg gcgcttggcg ccgtcgcgca caagaccgtg
       61 cacgtggacc tgcgcagcat cggcggctcc gcgctcaccg acgacatcga cgtccccgag
      121 gcgggcggcg ccggcatccc ggtgacctac gtgcccgcgc gcaacaccat catgctctcg
      181 ctcgcgctcg gctgggccga agtgctcggc gcctccgacg tcttctgcgg tgtcaacgcg
      241 gtcgattatt ccggttatcc cgactgccgc ccggagttca tccaggcatt cgagcgtctc
      301 gccaacgtcg ccaccaaggc cggcgtcgaa ggtgccggct tccgcatcca cgcgcctctg
      361 ctgcggctcg gcaaggccga catcgtgcgc gaaggcctgc gcctgggcgt cgatttcgcg
      421 cagacggtgt cctgctacca ggccgacgac gccggccgtg catgcggcca ttgcgatgcg
      481 tgccggctgc gcacgcaggg tttcgcggcg gcgggcgtgg ccgacccgac gcgctaccgc
      541 tgacctcccg cgaacgcatc gttcgcgagc gtcccgcgcc acgcctgcac gggccgggcg
      601 gggccgatgg ccgatgctag aatcccgcac cgcacgcgca tgggccgtta gctcagtcgg
      661 tagagcatcg gacttttaat ccgctggtcg atggttcgaa tccatcacgg cccaccagct
      721 ccgggaacgg ccgcgaaccg gcgtcgatcc actggtcgaa tgagtggatc ctccgcgacg
      781 cagggcttcc gaagcgccag cacgtccgcg ccgccgcgcc gaagcgcgcg ctcttcacgc
      841 ttcctgcacc acgacaggag ccgccggcga cgcttcgcgc ctccttcgcc cgtcgctggg
      901 gacgatggcg gcccccgacc ggcggacgcc aggatcatgt accggctcgg caacatccac
      961 ctccggctcg agcacgtgac gatggtgttc cccgtgcatc cgctgctcgg ccaggagggc
     1021 gtgcacggct tcgacgtgat ggtcggcggc tacctgcaca ccgcgaaata cctcgatggc
     1081 gaggcggcgc ggcgcgcgca cgcggccctg ctggcggcgc tggagccggc cgtggcggtc
     1141 ccggaggccg caccggtcga ggtggcgacg ccggcgccga tggcgcccgc gccgtccgtc
     1201 gcggccaagg gcgcgggcaa gcgcaaggcg ggcaagccgg acgctccgcg ctcgcggcat
     1261 tgacgccgcg ggtggatcag ctcgtggcca gcgcctccag cagcggctgc ccgtaacgct
     1321 cgagcttgcg gtcgccgacg ccgctgatcc gcgccagcgc ggcgaggtcc gccggtcgcg
     1381 cccgtgcgat cgcgcgcagc gtggcgtcgt ggaagatgac gtaggccggc acgttctgcg
     1441 tgcgcgcgac ctccgcgcgc cacgcgcgca gggcgtcgaa gcaggcgagc gcgtccgcgg
     1501 gcaggtcggc ggcggccgtc gtgccggccg cggcgtcgcg cccgcgacgg tccttgcgcc
     1561 cggccgcgtc ggcgcgcaac gacagtctcc gtccgcccgt cagcaccgaa gcgctcgcgg
     1621 cggtgaagcg cagcgcgccg tggccttcga cgtccgcttc cagcaggccc atcgccacca
     1681 gctggcggaa cacgctccgc cactggcgcg cgtcgaggtc ggcgccgatg ccgtaggtgc
     1741 tgagcgcgtc gtggccgaac tggcgcacct tggcggtgtc ggcgccgcgc agcacgtcca
     1801 ccaggtgggc ggcgccgaag cgctggccgg tgcggtacac gcaggagagc gcctttcgcg
     1861 cggcttcggt gccgtcccag cttcgcggcg ggacgaggca gttgtcgcag tggccgcagg
     1921 cgccgggatg gtcttcgccg aaataggcga gcagggtctg ccgccggcag ccggtggatt
     1981 cgcagtagcc gaccagcgcg tcgagcttgc gccgctccag ccgcttgcgg tcctcgcccg
     2041 cctcgccctc ctcgatcatg cggccgagca gcacggcgtc gccgagcccg taggcgagcc
     2101 acgcctcggc gggttcgccg tcgcggccgg cgcggccggt ctcctggtag tagccctcca
     2161 tcgacttggg caggtcggtg tgcgccacga agcgcacgtc cggcttgtcg atgcccatgc
     2221 cgaaggcgat cgtcgccacc atcacgatgc cgtcctcgcg caggaagcgc cgctggtgcg
     2281 cggcgcgcac gccggcgtcg agcccggcgt ggtagggcag ggcgacgatg ccgcgttcgg
     2341 cgagataatc ggcggtggac tccaccttgc gccgggacag gcagtagacg atgccgctgt
     2401 cgccgcggtg cccggcgagg aagtccagca gctggcgccg gctgtcctgc ttggcgacga
     2461 cggtgtagcg gatgttcggc cggtcgaacg agctgacgaa ctggcgcgcc tcgtgcagcg
     2521 ccaggcgctc gacgatctcg ttgcgcgtcg gcgcgtccgc ggtggcggtg agcgctatgc
     2581 gcggtacctc cggccagcgc tcgtgcagca gggtgagttc gcggtattcg gggcggaagt
     2641 cgtggcccca ctgcgagacg caatgcgctt cgtcgatggc gaacagcgcg gggcggctgc
     2701 gctcgagcag cgacaggaag cgcggggtga gcaggcgctc cggcgcgacg tacagcaggt
     2761 cgagctcgcc ggtgcgcagc tggcgttcga cggtgtcggc ttcccccgcc gacagggtcg
     2821 aattcaggaa cgccgcgcgc acgccgagct ggcgcagcgc ctcgacctgg tcctgcatca
     2881 gcgcgatcag tggcgagacg acgatcgcgg tgccctcgcg cagcagggcc ggcagctggt
     2941 agcacagcga cttgccgccg ccggtgggca tcaggaccag cgcgtcgccg cccgccgcga
     3001 cgtgggcgac gatctcgcgc tggtgcggcc ggaactccgg gtagccgaag acctcggcga
     3061 gcgtctggtc gatgccggtg gcgcgtacgg tcatgcaagt cccctctcgt gctgtcaaca
     3121 cacggtagca gaggggtgtg accggtctca gtccgacggg atgccgttct tgtgacacgt
     3181 gca
//
LOCUS       DATIQC010000349         2463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_517423, whole genome shotgun sequence.
ACCESSION   DATIQC010000349 DATIQC010000000
VERSION     DATIQC010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517423"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..872
                     /locus_tag="VLM17_07390"
     CDS             105..872
                     /locus_tag="VLM17_07390"
                     /inference="COORDINATES: protein motif:HMM:NF015527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase family 2 domain-containing
                     protein"
                     /protein_id="HSR65405.1"
                     /translation="MRTVICHYHIYKNSGTTFDALLYRNFGYRHLCFDGPFPFFSINQ
                     QELLKVINRHPSVVAFSSHQVALPVPSAVGLNVLPVVFVRHPLLRIFSIYQFKRAEKD
                     GTETSRNAEAMDFDEWVRHSLGHRQEVTQVSNAQTRMLGAVHGESALSQRAGSGMLYD
                     YHQALRNLRAVDLLARTEHFDADVGRFPALLAEHGIEFAVDDTTPLNVTASTPGLSVE
                     ERLAQVRGALSEGSYEALCAANAQDLDLYAQVCARLG"
     gene            complement(869..1963)
                     /locus_tag="VLM17_07395"
     CDS             complement(869..1963)
                     /locus_tag="VLM17_07395"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR65406.1"
                     /translation="MYLRAERISLYFPVPGGRHSERQLPSTARLGGSAVMRHGKPCIR
                     ALHDVSLALQGGDRLGVIGHNGSGKSTLLRTLAGLYSPHEGRVEASAPVSGIFNLSVG
                     FRQEATGVRNILLKGLMAGKSRREIEAAIPDIAAFTELGPFLDMPLNTYSQGMALRLA
                     FAITTTFAHDILVMDEWIGAGDAQFQERVVARMNSVLENAHICVLASHNRSLLQRLTD
                     RCLWMEDGRVKMEGPTPEVTEVYEEEVRRLQREAEAANAVPRLPIPAGHRVIEVLPPA
                     LPDSSAVELRWDLERFNVARVKLTVHDPVRDRRQLVCTAPAASSRRTGDWVRPGIEFE
                     LHDDRDGALLGAVTIEPRHLVAPGRAALPG"
     gene            complement(1966..>2463)
                     /locus_tag="VLM17_07400"
     CDS             complement(1966..>2463)
                     /locus_tag="VLM17_07400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65407.1"
                     /translation="RPWMLGTATPYPVYLLQTIFRNAVMFGLILLVVAPALFWKPQPW
                     SLTMLWALPALLAYLLTGVCLAATLAPLCVRFRDLHHAMQTAMRLLFFATPILWLPAT
                     NGRLALIAEWNPASHYLAILRDPLLYNTVPLESWAVVAAINLVGLPVGMLVYARTRRD
                     VIFWM"
BASE COUNT          412 a          843 c          847 g          361 t
ORIGIN      
        1 gttcgagcgc aacaaggcga tctacgaagc caaatggggc gcgtgggtgc cccatgccta
       61 ccggtccggc gacccccgcg ccaactaacc gcccaaagaa atccatgcgc accgtcatct
      121 gccactacca catctacaag aacagcggca cgaccttcga tgcgctcctc taccgtaatt
      181 tcggctatcg gcacctctgc ttcgacggcc ccttcccgtt cttctcgatc aaccagcagg
      241 aactgctgaa ggtcatcaac cgccatcctt cggtcgtggc gttctcctcc caccaggtcg
      301 ccttgcccgt gccttccgcg gtcggactga acgtcctgcc ggtcgtgttc gtgcgccatc
      361 ccctgctgcg catcttctcg atctaccagt tcaagcgcgc cgagaaggac ggcaccgaga
      421 ccagccgcaa tgccgaagcg atggacttcg acgaatgggt caggcattcg ctcggccacc
      481 ggcaggaagt cacgcaggta tcgaacgcgc agacccggat gctgggggcc gtgcatggcg
      541 aatcggcgct ttcgcagcgc gcgggcagcg ggatgctgta cgactaccac caggcgctgc
      601 gcaacctgcg cgcggtcgac ctcctcgcgc ggaccgagca cttcgacgcc gacgtcgggc
      661 gtttcccggc gctgctggcg gagcatggca tcgagttcgc cgtcgatgac acgacgccgc
      721 tgaacgtcac cgccagcacg ccgggcctgt cggtcgagga gcgcctcgcg caggtgcgcg
      781 gcgcgctgtc cgaaggcagc tacgaggccc tgtgcgccgc gaacgcgcag gacctggacc
      841 tgtacgcgca ggtgtgcgcg cggctgggct agccgggcag cgccgcgcgg cccggggcga
      901 cgaggtggcg cggctcgatg gtgaccgcgc cgagcagcgc gccgtcgcgg tcgtcgtgca
      961 gctcgaactc gatgccgggc cgcacccaat cgccggtgcg gcggctggac gccgccggcg
     1021 cggtgcacac cagctgccgg cgatcacgca ccgggtcatg caccgtcaac ttgacccgcg
     1081 cgacgttgaa ccgctccagg tcccagcgca actcgacggc cgacgaatcc ggcaacgccg
     1141 gcggcagtac ctcgatcacg cggtggccgg ccgggatggg caggcgcgga acggcgttcg
     1201 ccgcttcggc ttcgcgctgc aggcgacgga cttcctcctc gtagacctcg gtcacctccg
     1261 gggtcggccc ttccatcttc acgcgtccgt cctccatcca gaggcagcgg tcggtcaggc
     1321 gctggaggag gctgcggttg tgcgaggcga gcacgcagat gtgcgcgttt tccaggacgc
     1381 tgttcatccg ggcgaccacg cgttcctgga actgcgcgtc gccggcgccg atccattcgt
     1441 ccatgaccag gatgtcgtgc gcgaaagtgg tcgtgatcgc gaacgccagc cgcagcgcca
     1501 tgccctggga ataggtgttc agcggcatgt cgaggaacgg accgagctcg gtgaacgccg
     1561 cgatgtccgg gatcgccgcc tcgatctccc ggcgcgactt cccggccatc aggcccttga
     1621 gcaggatgtt gcgcacgccg gtggcctcct ggcggaaacc caccgagagg ttgaagatgc
     1681 ccgacaccgg cgcgctcgcc tccacccggc cttcgtgcgg ggaatacagg ccggcgaggg
     1741 tgcgcagcaa ggtcgacttg cccgagccgt tgtggccgat cacgccgagg cggtcaccgc
     1801 cctgcagcgc cagcgacacg tcgtgcagcg cgcggatgca tggcttgccg tggcgcatca
     1861 ccgcgctgcc gccgaggcgc gccgtcgacg ggagctggcg ctcggaatgc cgcccgcccg
     1921 gaaccgggaa gtagaggctg atgcgctccg cccgcaggta catgctcaca tccagaagat
     1981 cacgtcgcgg cgggtgcggg cgtagacgag catgccgacc ggaagcccca ccaggttgat
     2041 tgcggccacg accgcccagc tctccagcgg gaccgtgttg tagagcagcg gatcgcgcag
     2101 gatcgcaagg taatgcgagg cgggattcca ttcggcgatg agggcgaggc gcccgttcgt
     2161 cgccgggagc cacaggatcg gggtggcgaa gaacagcagg cgcatggccg tctgcatggc
     2221 gtggtgcagg tcgcggaaac gcacgcacag cggggcgagg gtcgcggcga ggcagacccc
     2281 ggtcagcagg taggcgagca gggccggcaa tgcccacagc atcgtcagcg accagggctg
     2341 cggtttccag aacagcgcgg gcgccacgac gagcaggatg aggccgaaca tcaccgcgtt
     2401 gcggaagatc gtctgcagca ggtagaccgg gtagggcgtg gccgtgccca gcatccaggg
     2461 acg
//
LOCUS       DATIQC010000350         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_270695, whole genome shotgun sequence.
ACCESSION   DATIQC010000350 DATIQC010000000
VERSION     DATIQC010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270695"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VLM17_07405"
     CDS             <1..588
                     /locus_tag="VLM17_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014502249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HSR65408.1"
                     /translation="PKTQSALLEAMAEGQVTVDGASRTLSQPFFVVATQNPLDMAGTY
                     PLPDSQLDRFLLRLTLGYPGEQAERALLAGTDRRDLIAQSLPMLGPDDVLALRGAAAR
                     IHASEALVDYVQALLTRSRQHAGVRVGLSPRAGIALLRAARAYALLLGRAHVLPEDVQ
                     ALFGPVAAHRLVAEADAGQHPAALAKAILHAVPVD"
     gene            590..>1529
                     /locus_tag="VLM17_07410"
     CDS             590..>1529
                     /locus_tag="VLM17_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSR65409.1"
                     /translation="MAGGRWRRRLEGWARPRAPEPLPVRVDRHRVYVLPTAFGLFFGA
                     LLLAMGIGALNYNNNPALLLCLLLAGAANTSLLAAHLQLTGLAIDAVGAEPVPAGMPL
                     QVRVHANAPPGRERRGLRVDYHGLSASLSLVDGHGQALLAIATEHRGWLALDRLRIST
                     TRPLGLARAWTWVWPDTPLLVYPAPEPHGPPLPAGDGDHARMRAHPAGEELHQLRAYR
                     PGDPRRAIAWKPSARHGALLVREYEQPRGADVLLDWRQLNGLDGEARIRRLAHWVDEA
                     EREGRRSTLLLPGQPPLGPASGAAHRHACLRALALLP"
BASE COUNT          169 a          597 c          564 g          199 t
ORIGIN      
        1 cccaagaccc agagcgcgct gctggaagcg atggccgaag gccaggttac ggtggatggc
       61 gcgagccgca cgttgtcgca gccgttcttc gtggtcgcca cccagaatcc gctggacatg
      121 gccggcacct atccgctgcc cgactcgcag ctggaccgct tcctgctccg gctcaccctc
      181 ggctatcccg gcgaacaggc cgagcgcgcg ctgctggccg gcaccgaccg gcgcgacctg
      241 atcgcgcaga gcctgccgat gctcgggccc gacgacgtgc tcgcgctgcg cggcgcggcc
      301 gcgcgcatcc atgccagcga ggcgctggtc gactacgtgc aggcgctgct cacccgcagc
      361 cgccagcacg cgggcgtgcg cgtgggcctg tcgccacgcg cgggcatcgc gctgctgcgc
      421 gcggcgcggg cgtacgcgct gctgctcggc cgcgcgcacg tgctgccgga ggacgtgcag
      481 gcgctgttcg ggccggtcgc cgcgcatcgc ctggtcgccg aggccgacgc gggccagcat
      541 ccggcggcgc tggcgaaggc gatcctgcac gcggtcccgg tcgactgaca tggccggcgg
      601 gcggtggcgg cgtcggctcg aaggctgggc gcgcccgcgc gcgccggagc cgttgccggt
      661 gcgcgtcgac cgccaccggg tctacgtgct gccgaccgcg ttcggcctgt tcttcggcgc
      721 gctgctgctg gcgatgggca tcggcgcgct caactacaac aacaatccgg cgctgctgct
      781 gtgcctgctg ctcgccggcg cggccaacac cagcctgctc gcggcgcacc tgcagctgac
      841 cgggctggcc atcgatgcgg tcggcgccga gccggtgccg gccggcatgc cgctgcaggt
      901 gcgcgtgcac gcgaacgcgc cgccgggacg cgagcggcgc ggcctgcgcg tcgactacca
      961 cggactgtcc gcctcgctgt cgctggtcga cggccacggc caggcgttgc tggcgatcgc
     1021 gaccgagcac cgcggctggc tcgcgctcga tcgcctgcgc atctccacca cccgcccgct
     1081 cgggcttgcg cgcgcgtgga cgtgggtgtg gccggacacg ccgctgctgg tctatcccgc
     1141 gcccgagccg cacggcccgc cgctgcccgc cggcgacggc gaccacgcac gcatgcgcgc
     1201 gcatcccgcc ggcgaggaac tgcaccagtt gcgcgcctat cgccccgggg atccgcgccg
     1261 ggcgatcgcg tggaagccgt cggcgcgaca cggcgcgctg ctggtgcgcg aatacgaaca
     1321 gccgcgcggc gccgacgtgc tgctcgactg gcgccagctc aacggcctcg atggcgaggc
     1381 gcgcatccgc cggctcgcgc actgggtcga cgaggccgag cgcgagggcc gccgttcgac
     1441 cctgctgctg ccgggccagc cgccgctcgg gcctgcgtcg ggcgccgccc accgccacgc
     1501 ctgcctgcgc gcgctcgcgc tgctgccgc
//
LOCUS       DATIQC010000351         1806 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_447059, whole genome shotgun sequence.
ACCESSION   DATIQC010000351 DATIQC010000000
VERSION     DATIQC010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447059"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..791)
                     /locus_tag="VLM17_07415"
     CDS             complement(<1..791)
                     /locus_tag="VLM17_07415"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008578271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HSR65410.1"
                     /translation="MNPNYLDFEQPIADLEAKIQELRQASHGPAVNVDAEVHALQGKL
                     RQRTAQIFRDLTPWQVTQLARHPARPYTNDYIRIACDEFQELAGDRAFSDDAAIVGGL
                     GRIGGRSVVIIGHQKGRDTKSKIKRNFGMPRPEGYRKALRLMKLAERFGLPILTFIDT
                     PGAYPGIGAEERGQSEAIARNLLEMAELRVPIVCTVIGEGGSGGALAIAVGDVTLMMQ
                     YSTYSVISPEGCAAILWKSAENAGEAAESLGITAARLKALGVIDKV"
     gene            911..>1806
                     /locus_tag="VLM17_07420"
     CDS             911..>1806
                     /locus_tag="VLM17_07420"
                     /inference="COORDINATES: protein motif:HMM:NF025174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIM-barrel domain-containing protein"
                     /protein_id="HSR65411.1"
                     /translation="MARRSGWAFGLMLWMAGLPVAAQDWRHVGTVDAVARRPDGVELA
                     AGAVRVRISAWADGVLRVRMAPDGRFASTPSWAVTGAPAPGPVAVDEDAGTVRVRAAG
                     LVAEVAKSPLRVRILDGGGHVLVADIAPMGVDGARVRAWQAAPADAHYYGLGDKPGPL
                     DRRGRSFVNWNTDAYAWQGWSDPLYKSIPFFITLRSGVASGLFLDNPARSTFDFARDA
                     PGTLAFGADGGELDYYVVAGPTPREVLRRYTALTGRTPLPPLWALGFQQSRYTYAPEA
                     RVREVAATLRAHRIPADAIWLD"
BASE COUNT          229 a          629 c          674 g          274 t
ORIGIN      
        1 accttgtcga tcacgccgag ggccttcaac cgcgccgccg tgatgcccag gctctcggcc
       61 gcctcgcccg cgttctccgc gctcttccag aggatcgccg cgcagccctc gggcgagatc
      121 accgaatacg tcgagtactg catcatcagc gtcacgtcgc ccacggcgat cgcgagcgcg
      181 ccgcccgagc cgccctcgcc gatcaccgtg cacacgatcg gcacgcgcag ctccgccatc
      241 tccagcaggt tgcgcgcgat cgcttccgac tgcccgcgct cctcggcgcc gatgccggga
      301 taggcgccgg gcgtgtcgat gaaggtgagg atcggcaggc cgaagcgctc ggccagcttc
      361 atcagccgca gcgccttgcg gtagccctcg gggcgcggca tgccgaagtt gcgcttgatc
      421 ttgctcttgg tgtcgcggcc cttctggtgg ccgatgatca ccacgctgcg gccgccgatg
      481 cgaccgaggc caccgacgat cgcggcatcg tcggagaagg cgcggtcgcc ggcgagctcc
      541 tggaactcgt cgcaggcgat gcggatgtag tcgttggtgt aaggccgcgc cgggtggcgg
      601 gcgagctggg tcacctgcca gggcgtgagg tcgcggaaga tctgcgcggt gcgctggcgc
      661 agcttgccct gcagcgcgtg cacctcggcg tcgacgttga ccgccgggcc gtggctggcc
      721 tggcgcagtt cctggatctt ggcttccagg tcggcgatcg gctgctcgaa gtcgaggtaa
      781 ttggggttca tgcacgaaaa gcaggcagga aagaggacag tctagccgac cacgccatac
      841 ggtcgggtgt ggggcgccgc cagcccggtc ggcagggccg gtatgctgcc gggctccgac
      901 gggaggtggc atggcacgca gatccgggtg ggcgttcggc ttgatgctgt ggatggcggg
      961 gctgcccgtt gccgcgcagg actggcggca tgtcgggacg gtcgatgctg tggcgcggcg
     1021 tcccgatggc gtcgagctcg ccgccggcgc ggtgcgggtg cggatcagcg cctgggccga
     1081 tggcgtgctg cgcgtgcgca tggcaccgga tggccgcttc gcctcgacgc cgtcgtgggc
     1141 ggtgaccggc gcgcccgcgc ccggcccggt cgcggtcgac gaagacgccg gcacggtgcg
     1201 ggtgcgcgcc gccggcctgg tcgccgaagt ggcgaagtcg ccgctgcggg tgcgcatcct
     1261 cgatggtggc gggcacgtgc tggtcgcgga catcgcgccg atgggggtgg acggcgcgcg
     1321 cgtgcgcgcc tggcaggcgg cgccggccga cgcgcactac tacggcctgg gcgacaagcc
     1381 ggggccgctg gaccgtcgcg gccgcagctt cgtcaactgg aacaccgacg cctatgcgtg
     1441 gcagggctgg agcgacccgc tgtacaagtc gattccgttc ttcatcacgc tgcggagcgg
     1501 cgtcgccagc ggcctgttcc tcgacaaccc ggcgcgcagc accttcgact tcgccaggga
     1561 cgcgcccggc acgctcgcct tcggcgcaga cggcggcgag ctcgactact acgtcgtcgc
     1621 cggcccgacg ccgcgcgagg tgctgcggcg ctacaccgcg ctgaccgggc gcacgccgct
     1681 gccgccgctg tgggcgctcg gtttccagca gtcccggtac acctacgcgc cggaagcgcg
     1741 cgtgcgcgag gtcgccgcca ccctgcgcgc gcaccgcatc ccggccgacg cgatctggct
     1801 ggacat
//
LOCUS       DATIQC010000352         3409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_482778, whole genome shotgun sequence.
ACCESSION   DATIQC010000352 DATIQC010000000
VERSION     DATIQC010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3409
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482778"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..399)
                     /locus_tag="VLM17_07425"
     CDS             complement(<1..399)
                     /locus_tag="VLM17_07425"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HSR65412.1"
                     /translation="MRTLVHLSDLHFGRVDPAVLDPLARAVADARPDVVVVSGDLTQR
                     ARRAQFQEAAAFLARLPGPQIVVPGNHDVPLYDVARRFLAPLARFHRYVHADPFPAHV
                     DDTLAVVGVNTARSLVFKGGRINRAQVAALA"
     gene            complement(399..1307)
                     /locus_tag="VLM17_07430"
     CDS             complement(399..1307)
                     /locus_tag="VLM17_07430"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HSR65413.1"
                     /translation="MPGDPAPDVAVLLNAQAGSDHTPPDADAVRAAFAGHGLRAAVLA
                     CTPEHALDGRLREALAARPQVLVAAGGDGTVGAVAAQALAHGLPFGVLPLGTLNHFAR
                     ELGLPLELDQAVAVVAARRLRTVDVGEVNGEVFLNNASIGLYPQVVAKREYEQRHFAR
                     GKWSAMFRAAWRVLRHPEAYEIALDLEGREERRRTPAIFIGNNPYVLEGPRMGHRERL
                     DAGVLGVVVMRPRSRLGWCWLALRALCGRLSANDMEVHEVPAFRLEAHDGALPVARDG
                     EAHPLRPPLRFASRPRALRVCVPETP"
     gene            1472..>3409
                     /locus_tag="VLM17_07435"
     CDS             1472..>3409
                     /locus_tag="VLM17_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007974773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HSR65414.1"
                     /translation="MRDPDYTLEHKYTRTEGRIYLSGVQALVRLPLMQKLRDQAAGLD
                     TAGFVSGYRGSPLGGFDLELWRAKQHLAAAGVKFTPGLNEDLGATMVWGTQQTGLFPG
                     ARHAGVFGMWYGKGPGVDRCGDVFKHANAAGTAQHGGVLALAADDHACRSSTLPHGSE
                     GEFVSALMPVLNPAGVQDILDLGLLGWAMSRYTGRWVGFKTIAETVESSASVDVNPLA
                     LQIVAPDDFAMPRGGLNIRWPDPPLEQEMRLHQYAVKAAQAFARANRIDRVVIDSPDA
                     RLGIITTGKSYLDVLQALEYLGLDARACRELGIRVYKVAMTWPLEPVGLRAFARGLQD
                     IVVVEEKLSFIESQMKEQMYNWAERPSIVGKHDEAGEWILPSTSELTPARIAKVIARR
                     IQKFHDSEQIRNVLAWMEQKESELALPRAQFPRVPHYCSGCPHNTSTVVPDGSRALAG
                     IGCHYMVTWMDRDTDTFTHMGGEGVTWAGQAAFTDTPHVFQNLGDGTYFHSGSLAIRQ
                     AIAAGVNITYKILYNDAVAMTGGQPVDGTLSVPQIAHQMRAEGVDTIVVVSDDIGKWS
                     KPEIFPSGVEFLDRSELDAVQKRLREVKGVSILIYDQTCATEKRRRRKRGRMVDPNKR
                     VLINSLVCEGCGDCGKKSFCVS"
BASE COUNT          511 a         1242 c         1211 g          445 t
ORIGIN      
        1 ggcgagcgcg gcgacctgcg cgcggttgat gcgcccgccc ttgaacacca gcgagcgggc
       61 ggtgttcacg ccgaccaccg cgagcgtgtc gtcgacgtgc gcgggaaacg ggtcggcgtg
      121 cacgtaacgg tggaagcgcg cgagcggcgc gaggaagcgg cgggcgacgt cgtacagcgg
      181 cacgtcgtgg ttgccgggca ccacgatctg cggccccggc aggcgcgcga ggaatgcggc
      241 ggcctcctgg aactgcgcgc ggcgcgcgcg ctgggtgaga tcgcccgaga ccaccacgac
      301 gtcgggccgc gcgtcggcga ccgcgcgcgc gagcgggtcc agcaccgccg gatcgacgcg
      361 gccgaaatgc aggtccgaca ggtgcacgag cgtgcgcatc agggcgtctc cggcacgcac
      421 acccgcagcg cgcgcggccg gctcgcgaag cgcagcggcg gccgcagcgg atgcgcctcg
      481 ccgtcgcgcg ccaccggcag cgcgccgtcg tgcgcctcca ggcggaatgc aggcacctcg
      541 tggacttcca tgtcattcgc cgacagtcgc ccgcacagtg cgcgcagcgc cagccagcac
      601 cagccgagcc gggagcgcgg gcgcatcacg accacgccga gcacgcccgc gtcgaggcgc
      661 tcgcgatggc ccatgcgcgg gccttcgagc acataggggt tgttgccgat gaagatcgcc
      721 ggcgtgcgcc gccgctcctc gcggccctcc aggtccagcg cgatctcgta cgcctccggg
      781 tggcgcagca cgcgccaggc ggcgcggaac atcgcgctcc acttgccgcg cgcgaagtgg
      841 cgctgctcgt attcgcgctt ggcgacgacc tgcggataca ggccgatgct ggcgttgttg
      901 aggaagacct cgccgttgac ctcgccgacg tcgaccgtgc gcaggcggcg cgcggcgacc
      961 accgcgacgg cctggtcgag ttcgagcggc agcccgagtt cgcgggcgaa gtggttgagg
     1021 gtgccgagcg gcagcacgcc gaacggcagg ccgtgggcga gcgcctgggc ggcgaccgcg
     1081 ccgacggtgc cgtcgcctcc ggccgccacc agcacctgcg ggcgcgccgc gagcgcctcg
     1141 cgcagccggc cgtcgagcgc atgctccggg gtacaggcga gcaccgcggc gcgcagcccg
     1201 tggccggcga acgccgcccg caccgcgtcc gcatccgggg gcgtatggtc actgccggcc
     1261 tgcgcgttca gcaggacggc gacgtcgggg gcggggtcgc ctggcatgtc cagcatgcta
     1321 ggaggccgcc gtgcaggggg cgtggagcgg cgcggttgct acaatccgcg cccctttcgt
     1381 cccctgcccg ccgccgcccc ccggccgtgg cggcttcgcc atgaccccac cgaacccgtc
     1441 caccgccctc gacgccgcgc ggccctcgtc cgtgcgcgat cccgactaca ccctcgagca
     1501 caagtacacc cgcaccgagg gccgcatcta cctgtcgggc gtgcaggcgc tggtgcgcct
     1561 gccgctgatg cagaagctgc gcgaccaggc cgcggggctg gacaccgccg gcttcgtgtc
     1621 cggctatcgc ggttcgccgc tgggcggctt cgacctcgag ctgtggcgcg cgaagcagca
     1681 cctcgcggcg gcgggcgtga agttcacgcc cggcctcaac gaggacctcg gcgcgacgat
     1741 ggtgtggggc acgcagcaga ccgggctctt ccccggcgcc cggcacgccg gcgtgttcgg
     1801 catgtggtac ggcaagggcc cgggcgtcga ccgctgcggc gacgtgttca agcacgccaa
     1861 tgccgcgggc accgcgcagc acggcggcgt gctcgcgctc gccgccgacg accatgcctg
     1921 ccgcagctcc acgctgccgc acggctcgga aggcgagttc gtcagcgcgc tgatgccggt
     1981 gctcaacccc gccggcgtgc aggacatcct cgacctcggc ctgctcggct gggcgatgag
     2041 ccgctacacc ggccgctggg tcggcttcaa gacgatcgcc gagacggtcg aatcgtccgc
     2101 gtccgtcgac gtcaatccgc tcgcgctgca gatcgtcgcg cccgacgact tcgccatgcc
     2161 gcgcggcggc ctcaacatcc gctggccgga tccgccgctc gagcaggaaa tgcgcctgca
     2221 ccagtacgcg gtgaaggcgg cgcaggcgtt cgcgcgggcc aaccgcatcg atcgcgtcgt
     2281 gatcgattcg cccgacgcgc gcctgggcat catcaccacc ggcaagtcct acctcgacgt
     2341 gctgcaggcg ctcgagtacc tcggcctcga cgcgcgcgcc tgccgcgagc tcggcatccg
     2401 cgtgtacaag gtcgcgatga cctggccgct cgaaccggtc ggcctgcgcg cgttcgcgcg
     2461 tggcctgcag gacatcgtgg tggtcgagga gaagctgtcc ttcatcgaaa gccagatgaa
     2521 ggagcagatg tacaactggg ccgagcgccc gagcatcgtc ggcaagcacg acgaggccgg
     2581 cgagtggatc ctgccgtcga cgtccgagct gacgccggcg cgcatcgcca aggtcatcgc
     2641 gcgccgcatc cagaaattcc atgacagcga gcagatccgc aacgtgctcg cgtggatgga
     2701 gcagaaggaa tccgagctcg ccctgccgcg cgcgcagttc ccgcgcgtgc cgcactactg
     2761 ctcgggctgc ccgcacaaca cgtccacggt ggtgcccgac ggctcgcgcg cgctggccgg
     2821 catcggctgc cactacatgg tcacgtggat ggaccgcgac accgacacct tcacccacat
     2881 gggcggcgaa ggcgtgacct gggccggcca ggccgcgttc accgacacgc cgcacgtgtt
     2941 ccagaacctc ggcgacggca cctacttcca ctccggctcg ctggcgatcc gccaggcgat
     3001 cgcggccggc gtcaacatca cctacaagat cctctacaac gacgcggtcg cgatgaccgg
     3061 cggccagccg gtcgacggta cgctgtcggt gccgcagatc gcgcaccaga tgcgcgcgga
     3121 aggcgtcgac acgatcgtcg tggtgagcga cgacatcggc aagtggagca agcccgagat
     3181 cttcccgtcg ggcgtcgagt tcctcgaccg aagcgaactc gacgcggtgc agaagcgcct
     3241 gcgcgaggtg aagggcgttt ccatcctgat ctacgaccag acctgcgcca ccgagaagcg
     3301 ccgccgccgc aagcgcggca ggatggtcga tccgaacaag cgcgtgctca tcaactcgct
     3361 ggtgtgcgag ggctgcggcg actgcggcaa gaagtcgttc tgcgtgtcg
//
LOCUS       DATIQC010000353         2864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_447139, whole genome shotgun sequence.
ACCESSION   DATIQC010000353 DATIQC010000000
VERSION     DATIQC010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447139"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1048
                     /locus_tag="VLM17_07440"
     CDS             <1..1048
                     /locus_tag="VLM17_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014090367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protein adenylyltransferase SelO family protein"
                     /protein_id="HSR65415.1"
                     /translation="DVVRDMFYDGHPRAEPGAVVCRVAPSFLRFGHFELPFARGDAAL
                     LRRLADFCIDRDFPGLEGEGEARYARWFAETCERTAVMVAHWMRVGFVHGVMNTDNMS
                     ILGLTIDYGPYGWIDAFDPDWTPNTTDAHGRRYRFGWQPKTCYWNLTRLAHALSPLFA
                     EPSPPLTAGLQRYMDVFVAADRDNIARKFGLAACTDDDVDLMQDLHALMATAEIDMTL
                     WFRALADVDPAAPSLAPLEEAFYDHARRAGHSAALEAWLARYARRVQADPLDAATRRI
                     RMHAANPRYVLRNYLAQQAIERAEQGDAGGIAELLDVMRRPYDEQPGREAFARRRPEW
                     AKTRAGCSMLSCSS"
     gene            1252..>2864
                     /locus_tag="VLM17_07445"
     CDS             1252..>2864
                     /locus_tag="VLM17_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR65416.1"
                     /translation="MPLITLNGVDYSVGGPLLLDHVDLSIEAGERIALIGRNGAGKST
                     LLKLLAGELKPDDGDIRIAEGVRVARLEQEVPADARGDVFDVVAAGLGDVGAWLAEFH
                     HLSHAAQVDTDALAAVQARIEAAHGWSLDQRVGETLTRLDLDGDAAFAGLSGGLKRRV
                     LLARALVSQPDLLLLDEPTNHLDIAAIDWLENFLKTWPGALVFVTHDRRFLRALANRI
                     VEIDRGQVTSWPGDWANYERRREERLHAQAQEAARFDKLLAQEEVWIRQGIKARRTRD
                     EGRVRRLEAMRLARSQRRELAGNVRMDVAQGEASGRKVIEARDVSFAYAGVPVVSGFS
                     TTLFRGDRVGLVGPNGSGKTTLLKLLLGELAPTSGEVRLGSNLQVAYFDQYRATLRED
                     WNAIENVAEGREFLDINGSRKHVIGYLQDFLFTPERARAPITRLSGGERNRLLLARLF
                     ARPSNLLVMDEPTNDLDVETLELLEELLLDYQGTLLLVSHDRDFLDNVVTSTLALEGD
                     GRLGDYVGGYTDWLRQRPVEQATAAASPAS"
BASE COUNT          426 a         1011 c          998 g          429 t
ORIGIN      
        1 ggacgtggtg cgcgacatgt tctacgacgg ccatccacgc gccgagccgg gcgcggtcgt
       61 gtgccgggtg gcgccttcgt tcctgcgctt cgggcatttc gaactgccgt tcgcgcgcgg
      121 cgacgccgcg ttgctgcgca ggctggccga cttctgcatc gatcgcgatt ttcccggcct
      181 cgaaggcgag ggcgaggcgc gttacgcgcg ctggttcgcg gagacgtgcg agcgcaccgc
      241 ggtgatggtc gcgcactgga tgcgggtggg gttcgtgcac ggggtgatga acaccgacaa
      301 catgtccatc ctcggcctga ccatcgacta cggcccgtac ggctggatcg acgccttcga
      361 tcccgactgg acgcccaaca ccaccgacgc gcacggacgc cgctaccgct tcggctggca
      421 gcctaagacc tgctactgga acctcacccg gctggcgcac gcgctgtcgc cgctgttcgc
      481 cgaaccgagc ccgccgctga cggccggcct gcagcgctac atggatgttt tcgtcgcggc
      541 cgatcgcgac aacatcgcgc gcaagttcgg actcgccgca tgcacggacg acgacgtcga
      601 cctgatgcag gacctgcacg cgctgatggc cacggccgaa atcgacatga cgctgtggtt
      661 ccgcgcgctg gcggacgtgg acccggcggc gccgtcgctg gccccgctgg aggaggcctt
      721 ctacgaccac gcccggcgcg ccgggcattc cgcggcgctg gaggcatggc tggcgcgcta
      781 cgcccggcgg gtgcaggccg atcccctcga tgccgccacg cgccgcatcc gcatgcacgc
      841 cgccaacccg cgctacgtgc tgcgaaacta cctcgcccag caggcgatcg agcgtgccga
      901 gcagggcgat gccggcggca tcgccgaact gctcgacgtc atgcgccgcc cgtacgacga
      961 gcagcccggg cgcgaggcct tcgcccgccg gcgcccggaa tgggcgaaga ccagggccgg
     1021 atgttcgatg ctgtcctgca gttcctgaaa aaagccggct tacttgccgg ctttcttctc
     1081 cttcttggcc gcccgcttct ccttcagcga cttggccggt tccttcttct gctccttctt
     1141 gcgatccatc cccttgctca tcgtgacccc ttcggtcgtg gcgacgaagg gattatgcgt
     1201 cgggagcggg cggaacggag ggccgggacc gggccccgac tacaatgcgg catgcccctg
     1261 atcaccctga acggcgtcga ctacagcgtc ggcggcccgc tgctgctcga ccacgtcgac
     1321 ctgtccatcg aagccggcga gcgcatcgcc ctgatcggcc gcaacggcgc cggcaagtcg
     1381 accctgctca agctgctcgc gggcgaactg aagcccgacg acggcgacat ccgcatcgcc
     1441 gagggcgtgc gcgtggcgcg gctggaacag gaggtgccgg ccgacgcgcg cggcgacgtg
     1501 ttcgacgtgg tcgcggcggg acttggcgac gtcggtgcct ggctggccga attccaccac
     1561 ctgagccacg cggcccaggt cgataccgat gcgcttgcgg cggtgcaggc ccggatcgag
     1621 gcggcgcacg gctggtcgct ggaccagcgc gtcggcgaga ccctgacccg actcgacctg
     1681 gacggcgatg ccgccttcgc cggcctgtcg ggcggcctga aacggcgcgt gctgctggca
     1741 cgcgcgctgg tgtcgcagcc ggacctgctg ctgctcgacg agccgaccaa ccatctcgac
     1801 atcgccgcga tcgactggct cgagaatttc ctgaagacct ggccgggcgc gctggtcttc
     1861 gtcacccacg accgccgctt cctgcgcgcg ctggccaatc gcatcgtcga gatcgaccgg
     1921 gggcaggtca cgagctggcc cggcgactgg gccaactacg aacgccggcg cgaggagcgg
     1981 ctgcatgcgc aggcgcagga agccgcgcgc ttcgacaagc tgctggcgca ggaggaagtc
     2041 tggatccgcc agggcatcaa ggcgcgccgc acccgcgacg agggccgcgt gcgcaggctg
     2101 gaggcgatgc ggctggcgcg ctcgcagcgg cgggagctgg ccggcaacgt gcggatggac
     2161 gtcgcccagg gcgaggcgtc ggggcgcaag gtgatcgagg cgcgcgacgt gtccttcgcc
     2221 tatgcgggcg tgccggtggt cagcggcttc tccacgaccc tcttccgtgg cgaccgcgtc
     2281 ggcctggtcg gccccaacgg aagcggcaag accacgctgc tcaagctgct gctgggcgaa
     2341 ctcgcgccga cctccggcga ggtgcgcctg ggcagcaacc tgcaggtggc gtatttcgac
     2401 cagtaccgcg cgacgctgcg ggaggactgg aacgcgatcg agaacgtcgc cgaaggccgc
     2461 gagttcctcg acatcaacgg cagccgcaag cacgtgatcg gctacctgca ggacttcctg
     2521 ttcacgccgg agcgcgcgcg cgcgccgatc acccgcctct cgggcggcga gcgcaaccgc
     2581 ctgctgctgg cgcggctgtt cgcgcgcccg tccaacctgc tggtgatgga cgaacccacc
     2641 aacgacctgg acgtggaaac gctggaactg ctggaggaac tcctgctgga ctaccagggc
     2701 accctgctgc tggtcagcca cgaccgcgat ttcctcgaca acgtggtgac cagcacgctg
     2761 gcgctggaag gcgacggccg gctgggcgac tacgtgggcg gctacaccga ctggctgcgc
     2821 cagcggccgg tggagcaggc cactgcggca gcgtcgcccg cctc
//
LOCUS       DATIQC010000354         2668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_517611, whole genome shotgun sequence.
ACCESSION   DATIQC010000354 DATIQC010000000
VERSION     DATIQC010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2668
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517611"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VLM17_07450"
     CDS             complement(<1..287)
                     /locus_tag="VLM17_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 family protein"
                     /protein_id="HSR65417.1"
                     /translation="MGIHLPRWIWTGAGALAAVAGMVNVVGFLGFEHQAITHLTGTTT
                     LLGAAVAKGDGMAAARLLGAALAFLAGAAFGGLLIQDSSARIGRRYGVALA"
     gene            complement(312..1709)
                     /locus_tag="VLM17_07455"
     CDS             complement(312..1709)
                     /locus_tag="VLM17_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010365742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HSR65418.1"
                     /translation="MTRSKRIYVLDTNVLMHDPTALFKFEEHDVFLPMQVIEELDNAK
                     KGTSEASRNARQVSRFLNELIEGHETGEIAAGVPLARPQGLQLRGAQSAGRLRFQTSE
                     FDSGKRFGAVIPDNHILGAILGLQSAHPGTPVVFVSKDVNLRIKASIAGIVSEDYEND
                     RALDDFSLLYTGATALAEDFWQRHGKELRSWTEKGRTFYEIGRRDGEEWYPNQFLYLP
                     GEEEAELKVARIAGDRVVLQIVDDFRHSQHAVWGITARNREQNFALNALMDPEVDFVS
                     LLGTAGTGKTLLALAAGLAQTMDQQRYREIIMTRATVSVGEDIGFLPGTEEEKMTPWM
                     GALTDNLEVLTHNQEGGSWGRAATNDLLASRIKIRSMNFMRGRTFLSRYLILDEAQNL
                     TPKQMKTLVTRAGPGTKIVCLGNVEQIDTPYLTETTSGLTYAVDRFKNWEHSAHVTLR
                     RGERSRLADYASEAL"
     gene            complement(1831..2328)
                     /locus_tag="VLM17_07460"
     CDS             complement(1831..2328)
                     /locus_tag="VLM17_07460"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSR65419.1"
                     /translation="MADAGKPLSKSILALPLALSDGSNARLADFAGQWLVLYFYPKDS
                     TPGCTTEGIEFNALLPKFHKLGAEVLGVSRDSLKSHQAFCAKQGFGFRLVSDGDEALC
                     KAFDVIKPKKLYGREYVGVERSTFLVDPQGRVAEAWRAVKVPGHAQAVLDALQAAQTG
                     SRQPK"
     gene            complement(2360..>2668)
                     /locus_tag="VLM17_07465"
     CDS             complement(2360..>2668)
                     /locus_tag="VLM17_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014503111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HSR65420.1"
                     /translation="LMWYRTGAKPVQSNLLPYVVEVVAADKPGILYQLADFFDRQSIT
                     IESLHCSRYRAMQTGADMFSAQVTIGIPSDMHIAALRDDFLEFCDHLNLDAIMDPMKF
                     "
BASE COUNT          383 a          872 c          956 g          457 t
ORIGIN      
        1 atcgccagcg cgacgccgta gcgccgcccg atccgcgcgc tgctgtcctg gatcagcagt
       61 ccaccgaacg cggcgccggc gaggaaagcc agcgccgcac ccagcaggcg cgccgccgcc
      121 atcccgtcgc ccttcgccac cgccgccccg agcagcgtcg tggtgccggt caggtgcgtg
      181 atcgcctggt gctcgaagcc gaggaagccg accacgttga ccatgccggc gaccgcggcg
      241 agcgcgccgg cgccggtcca gatccagcgg gggagatgga tgcccatggc gcgacgggtt
      301 cggtgcggac cctacagcgc ctccgacgcg taatccgcca gccgcgagcg ttcgccgcgg
      361 cgcagcgtca cgtgcgcgct gtgctcccag ttcttgaagc ggtcgaccgc ataggtgagg
      421 ccggaggtcg tttcggtgag gtagggcgtg tcgatctgtt cgacgttgcc gaggcacacg
      481 atcttggtgc ccgggccggc gcgggtgacc agcgtcttca tctgcttggg ggtgaggttc
      541 tgcgcttcgt ccaggatcag gtagcggctc aggaacgtgc gcccccgcat gaagttcatc
      601 gaacggatct tgatgcgcga ggcgagcagg tcgttggtcg ccgcgcgccc ccagctgccg
      661 ccttcctggt tgtgggtcag cacctcgagg ttgtcggtga gcgcgcccat ccacggcgtc
      721 atcttttcct cctcggtgcc gggcaggaag ccgatgtcct cgcccacgct caccgtcgcg
      781 cgggtcatga tgatctcgcg gtaacgctgc tggtccatcg tctgggcgag gccggcggcg
      841 agcgccagca gcgtcttgcc ggtgcccgcg gtgccgagca ggctgacgaa gtcgacctcc
      901 gggtccatca gtgcgttgag cgcgaaattc tgctcgcggt tgcgcgcggt gatgccccac
      961 acggcgtgct gggagtggcg gaagtcgtcg acgatctgca gcaccacgcg gtcgccggcg
     1021 atgcgcgcca ccttcagctc cgcctcctcc tcgccgggga ggtagaggaa ctggttcggg
     1081 taccactctt cgccgtcgcg gcggccgatt tcgtagaagg tgcggccctt ctcggtccag
     1141 gagcgcagct ccttgccgtg gcgctgccag aaatcctccg ccagcgcggt cgcgccggtg
     1201 tagaggaggc tgaaatcgtc gagcgcgcgg tcgttctcgt aatcctccga cacgatcccg
     1261 gcgatcgaag ccttgatccg caggttgacg tccttggaga cgaacaccac cggcgtgccc
     1321 gggtgcgccg actgcaggcc gaggatcgcg ccgaggatgt ggttgtcggg aatcaccgcg
     1381 ccgaagcgct tgcccgagtc gaactcgctg gtctggaagc ggagccgccc ggcgctctgc
     1441 gcgccgcgca gctgcaatcc ctgcggccgc gccagcggca cgccggcggc gatctcgccg
     1501 gtctcgtggc cctcgatcag ctcgttgagg aagcggctga cctggcgcgc gttgcggctg
     1561 gcctccgacg tgcccttctt ggcgttgtcc agctcctcga tcacctgcat cggcaggaag
     1621 acatcgtgct cctcgaactt gaacagcgcg gtcgggtcgt gcatcagcac gttggtgtcg
     1681 aggacgtaga tgcgcttgct tcgggtcatg cgttcggctc tcggcgagag ggaagggcag
     1741 ggtggtgcgc gtgttgccgg ggcggcggaa tggcggcggc caccgcggcc cgcgtggcgg
     1801 ggcagtggcg ggtggggaag gcgggatgcg tcacttgggc tggcggctgc ccgtctgcgc
     1861 ggcctgcagg gcgtcgagca ccgcctgcgc gtggccgggc accttgaccg cgcgccatgc
     1921 ctcggccacg cggccctgcg gatcgaccag gaaggtgctg cgttcgacgc cgacgtactc
     1981 gcgcccgtag agcttcttcg gcttgatcac gtcgaaggcc ttgcacagcg cctcgtcgcc
     2041 gtcgctgacc agccggaaac cgaaaccctg cttcgcgcag aaggcctggt gcgatttcag
     2101 cgagtcgcgc gatacgccga gcacctccgc gccgagcttg tggaacttcg gcagcagcgc
     2161 gttgaactcg atgccctcgg tggtgcagcc gggcgtgctg tccttcgggt agaaatacag
     2221 caccagccac tggccggcga agtcggcgag cctggcgttg ctgccgtcgg acagggccag
     2281 cgggagcgcg aggatcgact tgctcagtgg cttgccggca tcggccaagt tgcggatctc
     2341 cagtgcggtc gcggaggcct cagaacttca tcggatccat gatcgcgtcg aggttcaggt
     2401 ggtcgcagaa ttcgaggaag tcgtcgcgca gcgcggcgat gtgcatgtcc gagggaatgc
     2461 cgatcgtcac ctgcgcggag aacatgtcgg cgccggtctg catcgcgcgg tagcgcgagc
     2521 agtgcaggct ctcgatggtg atcgactgcc ggtcgaagaa atcggcgagc tggtagagga
     2581 tgcccggctt gtcggccgcg accacttcga ccacgtacgg cagcaggttg gactgcacgg
     2641 gcttggcgcc ggtgcggtac cacatcag
//
LOCUS       DATIQC010000355         2432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_659645, whole genome shotgun sequence.
ACCESSION   DATIQC010000355 DATIQC010000000
VERSION     DATIQC010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_659645"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..831
                     /locus_tag="VLM17_07470"
     CDS             148..831
                     /locus_tag="VLM17_07470"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HSR65421.1"
                     /translation="MTTAPRAAGAWRRYAAWSLDFVVLAAPALLLAAPRMQAALQAIT
                     RAYEVLGGRLARQLGDALLQGGDPARLAPGLLQDPGVLADANALQSALFALCLPPLVA
                     YAVLGLGYHVGFQCGRWRASPGQHALGLAVARADGSRAAPVRLLLRHLAGSLSWLTLN
                     LGHALALVPPHRTLHDLLAGTTVLDASGEPRLPAWAKAWLALQGLVLVFALAWGVRRY
                     LTLLQAALG"
     gene            complement(839..1714)
                     /locus_tag="VLM17_07475"
     CDS             complement(839..1714)
                     /locus_tag="VLM17_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65422.1"
                     /translation="MKASGPAAGWSWLVRGINTGRRNPGAVFGAAGLLALCGLAPSAV
                     QLLLQATLKPAPAALLALMGAMMLVAAVLYPLLCGGFLQVIDAAEAGRPTRATALFAP
                     FRRGRGGGQLVLLGVCLLLVYLAALALVMLTVGRGLGAWYLQVLAQAAAGGAAGATPP
                     TLPSGFGATFALLLVFGLFYSGVYAIGMGQAALGGRDAMQALRDGFVGAARNLLPMLV
                     LAVCGLVAGLVAALLAGLLIGVVALLAGLLSKVLALALVVPLYVALIVVLYAMMFGVM
                     HAMWRDVAAAPAVAA"
     gene            complement(1796..>2432)
                     /locus_tag="VLM17_07480"
     CDS             complement(1796..>2432)
                     /locus_tag="VLM17_07480"
                     /inference="COORDINATES: protein motif:HMM:NF041043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="BPSS1780 family membrane protein"
                     /protein_id="HSR65423.1"
                     /translation="TIDGGGHAAPEHLLQAVREGKAARLLATLLPQVAALVLCVLLLV
                     VMVGGGDQLQQMAQTIAQMQAQPRPDPALAQTLPVGRLLLWLLLVCVVGIVAGFFTFV
                     AAPEIMFTDSRAFDAMGRSFRACIRNLPALLVFFVLTVIAALAVYIAVMLVALVVRVF
                     AGAMAMQVVAQLLSTAVLMPVIAGAMYIGWKQMLADDPAGERVRPPSTVAL"
BASE COUNT          345 a          970 c          842 g          275 t
ORIGIN      
        1 catcttcgtg atcgccgcgg tgatcacccc gccggacgtc gtctcgcaga tgctgctggc
       61 cctgccgatg atcctgctct acgaggccgg catcatcgcc gcgcgcctgg tggggccggc
      121 gcgcaagccc gaaccctcca tcggcgaatg acgacggcgc cgcgcgcggc cggcgcatgg
      181 cggcgctacg cggcgtggtc gctggatttc gtcgtgctgg ccgcgccggc gctgctgctg
      241 gccgcgccgc ggatgcaggc tgcgctgcag gcgatcaccc gggcttacga ggtcctgggc
      301 ggacggcttg cccgccagct gggcgacgcg ctgctgcagg gcggcgatcc ggcccggctc
      361 gcgccggggc tgctgcagga tcccggcgtg ctcgccgatg ccaacgcgct gcagtcggcg
      421 ctgttcgcgc tgtgcctgcc gccgctcgtc gcctacgccg tgctcggcct cggctaccac
      481 gtcggcttcc agtgcgggcg ctggcgcgcc tcgcccggcc agcacgcgct cggcctcgcc
      541 gtcgcgcgcg ccgacgggtc gcgcgccgcg cctgtacggt tgctgctgcg ccacctcgcg
      601 gggtcgctgt cgtggctgac gctcaacctc ggccatgccc tcgcgctggt cccgccgcac
      661 cgcacgctcc acgacctgct cgcgggcacg acggtgctcg acgcgagcgg cgagccccgc
      721 ctgcccgcgt gggcgaaggc gtggctcgcg ctgcagggac tggtgctggt cttcgccctc
      781 gcgtggggcg tgcgccgcta cctgacgctg ctgcaggccg cgctcggctg aggcgccctc
      841 aggcggcgac cgccggggcg gcggcgacgt cgcgccacat cgcgtgcatc acgccgaaca
      901 tcatcgcgta cagcaccacg atcagcgcca cgtacagcgg caccaccagc gccagcgcca
      961 gcaccttgct gagcaggccg gcgagcaacg ccaccacgcc gatcagcagg cccgccagca
     1021 gcgccgcgac cagcccggcg accagcccgc acaccgccag caccagcatc ggcagcaggt
     1081 tgcgcgccgc gccgacgaag ccgtcgcgca gcgcctgcat cgcatcgcga ccgccgagcg
     1141 ccgcctggcc catgccgatc gcgtacaccc cgctgtagaa caggccgaac accagcaaca
     1201 gcgcgaaggt cgcgccgaag ccggacggaa gcgtcggcgg ggttgccccg gctgcgccgc
     1261 cggcggcggc ctgcgccagc acctgcaggt accacgcgcc gagcccgcgc ccgaccgtga
     1321 gcatcaccag cgcgagcgcg gcgaggtaga ccagcagcag gcacacgccg agcagcacca
     1381 gctggccgcc gccccgcccg cgccggaatg gcgcgaacaa cgcggtcgcg cgcgtcggcc
     1441 ggcccgcctc ggccgcgtcg atcacctgca ggaagccgcc gcacagcagc gggtagagca
     1501 ccgccgcgac cagcatcatc gcgcccatca atgcgagcag cgccgccggg gccggcttga
     1561 gcgtggcctg cagcagcagc tgcaccgcgc tcggcgccag cccgcacagc gccagcaggc
     1621 cggccgcgcc gaacaccgcc cccgggttgc gccggccggt gttgatcccg cgcaccagcc
     1681 acgaccagcc cgccgccggg ccgcttgcct tcatccccat tccgttctcc ccttggacgc
     1741 cccggctgga gcgcgccccg aggataccgt cagcgccaag gacggggcat ggcggtcaca
     1801 gcgcgaccgt cgagggcggc cggacgcgct cgccggccgg gtcgtcggcg agcatctgct
     1861 tccagccgat gtacatcgcc ccggcgatca ccggcatcag caccgcggtg gacagcagct
     1921 gggcgacgac ctgcatcgcc atcgcgccgg cgaacacccg caccaccagc gcgaccagca
     1981 tcaccgcgat gtacaccgcc agcgcggcga tcaccgtcag cacgaagaac acgagcagcg
     2041 ccggcaggtt gcggatgcag gcgcggaagc tgcgacccat cgcgtcgaac gcgcggctgt
     2101 cggtgaacat gatctcgggc gcggcgacga aggtgaagaa gccggcgacg atgccgacca
     2161 cgcacaccag cagcagccac agcagcagcc ggccgaccgg cagcgtctgc gccagcgcgg
     2221 gatccgggcg cggctgcgcc tgcatctgcg cgatcgtctg cgccatctgc tgcagctggt
     2281 cgccgccgcc gaccatcacc accagcagca gcacgcacag caccagcgcc gccacctgcg
     2341 gcagcagggt ggcgagcagg cgcgcggcct tgccctcgcg caccgcctgc agcaggtgtt
     2401 cgggcgcggc gtggccaccg ccgtcgatcg tg
//
LOCUS       DATIQC010000356         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_588910, whole genome shotgun sequence.
ACCESSION   DATIQC010000356 DATIQC010000000
VERSION     DATIQC010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588910"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VLM17_07485"
     CDS             <1..300
                     /locus_tag="VLM17_07485"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR65424.1"
                     /translation="EAYAACDLVLQLSRQPEAFGRTVLEGLSVGRPVLGWAHGGVGEL
                     LRGLQPEGAVAPFDRQALHATARALLAQPPSPPAAFPDTLRAMQEATLAIYRELA"
     gene            297..>1583
                     /locus_tag="VLM17_07490"
     CDS             297..>1583
                     /locus_tag="VLM17_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HSR65425.1"
                     /translation="MSDPSAQHPAPVGWRWAPPWVLLFVALWPARGIAEGVLVLGALA
                     AIARLLLARFRGGMALLSAPAWALTSVLFCAYWVPQLVSAFDAVDRAHAFAESAVDLR
                     YLPFLWLAAAAVADARGRRITFGGIGIIVAAWTLDALLQAASGTSPLFWSLDALKQLA
                     SGHPMCPAGVAARADRLSGVLGPCNLKLGIVLASLAPFPLHAAARRFGRPGWLVAAVA
                     LGIVVLLAGARAAWITYALVLLLSGWRVLGVKRLAGVFVFGALALGVLTWTVPQVRER
                     IERTTSALTADEEGVDVALSGRARIWGAAACMTREHWFNGVGARGFRYAFPGCDPRPG
                     ERPEWGAGPALHAHQVVLEVLSETGGFGLVCWLAGAALAWRAWRFASVDAREHARPAM
                     LALAVTVFPLNTHLAFYSTFWGGVALLLAALYAGSLL"
BASE COUNT          145 a          569 c          613 g          256 t
ORIGIN      
        1 gaggcctatg ccgcctgcga cctcgtcctg cagctctcgc gccagcccga agccttcggc
       61 cgcaccgtgc tcgagggcct gtcggtcggg cgcccggtgc tcggctgggc gcatggcggc
      121 gtcggcgaac tcctgcgcgg cctgcagccc gaaggcgcgg tcgccccatt cgaccgccag
      181 gcactgcatg cgacggcacg cgcgctgctg gcgcagccgc catcgccgcc ggccgcattc
      241 cccgataccc tgcgcgccat gcaggaagcg accctcgcga tctaccggga gctcgcatga
      301 gcgatccgtc cgcacaacac ccggcgccgg tcggctggcg ctgggcgccg ccgtgggtgc
      361 tgctgttcgt cgcgctgtgg ccggcgcgcg gcatcgccga gggcgtgctg gtgctgggcg
      421 cgctggcggc gatcgcgcgc ctgctgctgg cgcgcttccg cggtggcatg gcgctgctga
      481 gcgcgccggc ctgggcgctg accagcgtgc tgttctgcgc ctactgggtg ccgcagctgg
      541 tctcggcgtt cgacgcggtc gaccgcgcgc acgccttcgc cgaatcggcc gtcgacctgc
      601 gctacctgcc gttcctgtgg ctggccgcgg cggcggtggc ggatgcgcgc ggccggcgca
      661 tcaccttcgg cggcatcggg atcatcgtcg cggcgtggac gctggatgcg ctgctgcagg
      721 ccgcgtcggg caccagcccg ctgttctgga gcctggacgc gctcaagcag ctggccagcg
      781 ggcatccgat gtgcccggcg ggggttgccg cccgggccga ccgcctcagc ggcgtactcg
      841 gcccgtgcaa cctcaagctc ggcatcgtgc tggccagcct ggcgccgttc ccgctgcatg
      901 cggcggcgcg gcgcttcggc cggcccggct ggctggtggc ggcggtcgcg ctcggcatcg
      961 tggtgttgct ggccggggcg cgcgcggcgt ggatcaccta tgcgctggtg ctgctgctgt
     1021 ccggctggcg ggtgctcggc gtgaagcggc tggccggggt gttcgtgttc ggcgcgctcg
     1081 cactgggcgt gctcacgtgg accgtcccgc aggtgcgcga acgcatcgag cgcaccacct
     1141 cggcgctgac cgctgacgag gagggcgtcg acgtggcgct gtcggggcgc gcgcgcatct
     1201 ggggtgcggc ggcgtgcatg acgcgcgaac actggttcaa cggcgtcggc gcgcgtgggt
     1261 tccgttacgc cttcccgggc tgcgatccgc gtcccggcga gcgcccggaa tggggtgccg
     1321 gcccggccct gcacgcgcac caggtggtgc tggaggtcct cagcgagacc ggcggcttcg
     1381 gcctggtctg ctggctggca ggcgccgcgc tggcgtggcg tgcatggcgc ttcgccagcg
     1441 tggacgcgcg cgagcatgca cgcccggcga tgctcgcgct cgcggtgacc gtgttcccgc
     1501 tcaacaccca cctggcgttc tactcgacct tctggggcgg cgtggcgctg ctgctggcgg
     1561 cgctgtatgc gggcagcctg ctc
//
LOCUS       DATIQC010000357        14723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_553971, whole genome shotgun sequence.
ACCESSION   DATIQC010000357 DATIQC010000000
VERSION     DATIQC010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 14723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14723
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553971"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..393
                     /locus_tag="VLM17_07495"
     CDS             <1..393
                     /locus_tag="VLM17_07495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470331.1"
                     /note="catalyzes the formation of biotin from
                     dethiobiotin; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HSR65426.1"
                     /translation="AHPDSVPINRLVQVEGTPLAGTKELDPFEFVRTIAVARLLMPRS
                     MVRLSAGRETMSDELQALCFLAGANSIFYGEKLLTTGNPDTDRDQALFARLGLKPMHV
                     AEQHADTAPAGLCGETVHAAITADAGAA"
     gene            396..1601
                     /gene="bioF"
                     /locus_tag="VLM17_07500"
     CDS             396..1601
                     /gene="bioF"
                     /locus_tag="VLM17_07500"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HSR65427.1"
                     /translation="MARPSLPERIAAQRAQREALDRVRVRRTVARRDGVRCHVLDESG
                     DGRWLVNFCSNDYLGLAQQFAVAGALQDAAAQHGAGSTASHLVCGHHALHEALEHELA
                     DWLGAPRALLFGSGYLANLAVVQALLGDDDLCVQDRLNHASLIDAARLAGCRLRRYPH
                     NDAEGALRQLRASPDVAALVATDGVFSMDGDIAPLRELALAARVQGAVLYVDDAHGVG
                     VLGPDGRGSVAAADLDVQAVPLQLATLGKALGGYGAVVLGDAALVGHLAETARPYIYT
                     TALPPALAAASLAAVKLARKDAWRREKLQAHVARFRGGAARAGFELLPSQTPIQPLVV
                     GDDRRALALAAALEERGYWVAAIRPPTVPEGSARLRITLSAAHTDADVDGLLGALAVA
                     RAELDRQPR"
     gene            1598..2593
                     /locus_tag="VLM17_07505"
     CDS             1598..2593
                     /locus_tag="VLM17_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug resistance efflux transporter family
                     protein"
                     /protein_id="HSR65428.1"
                     /translation="MTPSHDARRALAAMAFALLSALFFTMTYVLNRASADVGGHWAWT
                     AALRYLITLPLLLPLMPWQGGVAPVWRALRAHPGAWLRCSAIGFVAFYLLLAYAADSG
                     PAWLVAGSFQFTVIAGMLCAPLIYRDARRRVPVAALAVGALIFAGVLLLQFGHAHGGL
                     DRAGWIALACVLASAVLYPLGNRLLLLHLERSGEPLNATQRVFGMTLASQPLWWLVAA
                     YAWTRAGAPPPTQVWLAGGVALSAGVIATILFFEATGMVRDLPAALGAAEAMQAAELL
                     FASVLGALFLHEAWPRGIALWGAALVVAGIVAFALLVARPQPVAETRALRTDRGA"
     gene            2608..3375
                     /gene="bioH"
                     /locus_tag="VLM17_07510"
     CDS             2608..3375
                     /gene="bioH"
                     /locus_tag="VLM17_07510"
                     /EC_number="3.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HSR65429.1"
                     /translation="MHVDVAGAGPPLVLLHGWAMHGGVFAPLVARLRHRFTLHVVDLP
                     GHGLSRDSGVPLALDACVEAIAAQVPAAPWCGWSLGGLLALHAAATRPVRVPALAMLC
                     ASPRFVRGPDWRYGVSSEIFRDFASGLRADYRGTLDRFIALEAFGSDHAKEEIRTLRD
                     DLFARGEPSGVVLADGLELLETADLRGALPALAAPSLWLAGRRDRLVDPRAMREAAAL
                     APHAVLHVLEHAGHAPFLTHADEVAAQLCAFLADHAA"
     gene            3372..4259
                     /gene="bioC"
                     /locus_tag="VLM17_07515"
     CDS             3372..4259
                     /gene="bioC"
                     /locus_tag="VLM17_07515"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0102130 - malonyl-CoA methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HSR65430.1"
                     /translation="MNQPLFDTRHVRRAFARAAAGYDAAARLQHEVEARLLESLAFHE
                     ATPATVLDVGCGPGRASAALQEHWPKARVLALDLALPMLRAARRTAGGWRPFARRPQP
                     LCADVRALPFAGSSVDVVFSNLCVQWVEDLPALFAELRRVLRPGGLLLLSTFGPETLQ
                     ELREAFAQADAAPHVSPFADIARFGDALMHAGFRDPVLDRDVLATHYPDLAALMRELR
                     AIGATNALATRRHTLTGRSRFAAAAAAYETLRTGAGLPATWEVITAMAWAPQEGQPIR
                     EGGMDVARISASRIPVRRR"
     gene            complement(4260..5771)
                     /locus_tag="VLM17_07520"
     CDS             complement(4260..5771)
                     /locus_tag="VLM17_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSR65431.1"
                     /translation="MSRLLRSPRFWPGPVWIGALALVLALALLGHRGIWDPDEGRYTN
                     VALHMLDSGDWIDPHRSSEVGHWTKPPLTYWAIAASVGVFGHNAWAARLPAALSYLLC
                     VWLAGRIARRLAPGSEAQASLVFATMLFTIGASQLITTDYVLAACEALAMWAFVEARF
                     GGMSPDGAAQARRWLAAMWAAFALAFLTKGPPGLLPLLAVVAFELLARDRQRPALLQW
                     TGLLAFVAIALPWYLVVVQRNPGLLQYFLGSEVVGRVASNEFGRHGEWYGWLTIYGPT
                     LLLGTLPWTFALLRWARALPGRVRGWRSREGRAHDAAGLLLALWLLLPLLVFCVSRSR
                     LPLYVLPLAVPLAVIAARQRFSEGRGLPRWPGFAVLAVLVLAAEFAAARWSTHKDASA
                     WAREIHARAPGPISQVVIVQDMARYGLHLTLGAEVEKVSIEPQPGARFNPEYDESIAD
                     EIGDDFDGNALWITKQERWQATRDKLASLGIDAVPQGAPYQGRVLFRVRLAGR"
     gene            complement(5839..6378)
                     /locus_tag="VLM17_07525"
     CDS             complement(5839..6378)
                     /locus_tag="VLM17_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HSR65432.1"
                     /translation="MNAMPVARYRPALRRLHWLVALLVLAVYLLVEQRGLFPRGSGGR
                     AAMMQGHFWVGLAILVLALWRLGLRARSTVPPITPALPTWQSVPSKVLHLALYLFLVA
                     MPLLGLATAWSDGKVLLVPFTGVALPALLPENESLAHTLEELHETIGELFYWVIGAHV
                     AAALWHHWGRRDDTLRRML"
     gene            complement(6449..7438)
                     /locus_tag="VLM17_07530"
     CDS             complement(6449..7438)
                     /locus_tag="VLM17_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005920032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HSR65433.1"
                     /translation="MDGTTARAPAFTDILVAAARIAPHAHATPVLRARTLDALAGCEL
                     HLKAEHLQRAGAFKFRGACNAVWALPDDIARHGVVTHSSGNHGAALALAARTRGIACH
                     VVVPQGAVAAKLAAIEAYGATLHACAPTIAAREAAAARVQGDTGATLVHPYTDPQVIA
                     GQGTAALELLNACDGLDALVVPVGGGGLASGCALALAALAPQCRLFLAEPAGAAETAA
                     SLARGARVTDFVPDTVCDGLRGTLGAPNFDLLQAHGAQALVVEDAATIAAMRLLWTRA
                     KQLVEPSSAIALAAVLDQPGRFAGQRVGVLLSGGNVDLDALPGLFAGGQRAPA"
     gene            7571..8077
                     /locus_tag="VLM17_07535"
     CDS             7571..8077
                     /locus_tag="VLM17_07535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65434.1"
                     /translation="MIRTLLRALVLPGLAGALLAGCATGYQYRSGPGDYYYGQPEIEY
                     RDQGWYGYGGYGYPYGYYGSPYPYYYGGYYGGGFYDPYWDPWLHRRRTHHHDAPPPPT
                     GTTTPPPPTLPPPRWRERDDGDARPPRPITPPRPPVVVPAPPRRDDTPVFVPREHQER
                     DAHRKTQP"
     gene            8535..10427
                     /gene="mnmG"
                     /locus_tag="VLM17_07540"
     CDS             8535..10427
                     /gene="mnmG"
                     /locus_tag="VLM17_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012437137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HSR65435.1"
                     /translation="MTDSFHRHDVIVVGGGHAGTEAALAAARTGARTLLLTHSIETIG
                     AMSCNPAIGGIGKGHLVKEVDALGGVMARAADAAGIQWRRLNASKGPAVRATRCQADR
                     ALYRAFIRRAVESQPNLTVFQAAVDDIVFDDGRVQAVVTQTGLRFEAPAVVLTAGTFL
                     AGKVHVGQTTHAAGRAGDPPAVTLAQKLRAGPFVVDRLKTGTPPRIDGRSLDYSVMQE
                     QPGDDPRPVMSFLGSMADHPRQVSCWITHTSERTHELIRGALDRSPLYTGQIEGIGPR
                     YCPSIEDKVVRFADKTSHQVFVEPEGLDVVEIYPNGISTSLPFDVQLELVRSIRGFER
                     AHITRPGYAIEYDFFDPRGLKATLETKAVAGLFFAGQINGTTGYEEAAAQGLLAGVNA
                     ARFVRQREGWSPRRDEAYLGVLVDDLVTHGTSEPYRMFTSRAEYRLQLREDNADLRLT
                     PAGRDLGLVDDARFAAFDAKREAIEREAARLAAVWAAPNNAFGREVAETLGVEVSRET
                     SARDLLKRPELDYAALMRVPALAPGVEDAAVAEQVEIGVKYSGYLERQREEIARARRH
                     ETTRIPAAFDYAQVRGLSAEVLQKLARARPETVGQAQRIPGMTPAAISLLLVHLARGQ
                     RVAQAG"
     gene            10588..11850
                     /locus_tag="VLM17_07545"
     CDS             10588..11850
                     /locus_tag="VLM17_07545"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HSR65436.1"
                     /translation="MPTVARALLVLAVALTACHRTEAPPAKAEQPGHGPFVVQDWPLP
                     VAPGAAEPDLVAAPDGRLLLGWISSVPGRRNALQFSDADADGRWQTAPRTIAVGNTLL
                     ANWANAPHLLATPDGALWVHWLQAVGAGEATNLALARSTNDGFSWSAPLQVNPDGEAP
                     AEHGFAALWPASQDTLGMAWLAGGAEAADAHAAHGAHAGATALRAAVFDRNLQRSAEQ
                     VVDARACDCCRTAVAMTARGPLLVYRDRSDAEVRDIAATRFDGHAWSKPVPVHADGWK
                     MAGCPVNGPAIAARGNDAVVGWYTGAQDKPAVLLARTRDAGDHFDAPVAVDAGEQVDG
                     RVALALDAQQAWVAWLRADAGGSTLWLSRYATDLSHELQRFQVAKLHARGPAAGYPQL
                     AVRADGAWLVWTDSIDGVPQLRGAHVTR"
     gene            complement(11840..13303)
                     /locus_tag="VLM17_07550"
     CDS             complement(11840..13303)
                     /locus_tag="VLM17_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007804154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HSR65437.1"
                     /translation="MPTRRLRIQRPQGTAIADGIAAIRREMQLPLAFPPEVEAAAARA
                     AGAPRLPGLDRTDIPFVTIDPKGAMDLDQALYVQRQGDGYRVFYAIADVGAFVSPGDA
                     VDVEAHARGETLYGGDGKIPLHPKVLSEGAASLLPDQVRSALVWTIDLDATGEGIAVD
                     VRRARVRSRARLDYDGVQAEVDAGSADPLWALVRTVGELRRQREQRRGGISLPLPEQE
                     VEIGADGQWKLAFRARHPVEDWNEQLSLLTGMAAAHLMVEAKVGLLRTLPKPEPWAIA
                     RLRRTAAALDIPWPEAQDYPDFIRSLDPSRPRDVAMMTACTTVLRGAGYVAFDGSVPA
                     QPAHWALAAEYAHATAPLRRLADRYVGELCVALCAKAAPPDWVLAALPALPATMQAAD
                     TRAGRYERAVLDLVEAVTLAPRVGEAFDGTVVELARNDPRSGIVMLRDPAIESQLQGA
                     EPLPLGARVQARLVQADPATRATRFAWSPPAGSAPSG"
     gene            complement(13389..13682)
                     /locus_tag="VLM17_07555"
     CDS             complement(13389..13682)
                     /locus_tag="VLM17_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65438.1"
                     /translation="MPGPSPRWNATRLAVVLAVACAALAWWLPAIDGALPGGAFGWQW
                     ACVALAVALAAWAWRRLGMQAGGRVARIMLAVALALAALWVVGLAALWLLWPR"
     gene            complement(13703..13957)
                     /locus_tag="VLM17_07560"
     CDS             complement(13703..13957)
                     /locus_tag="VLM17_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009313422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65439.1"
                     /translation="MVAFDAWDLLQWPAMAVTLVAAWLVGAQHKRKRSWGFWCFVASN
                     ALWIAWGWHDHAWALVALQVGLFLTNLRGVRKNEPAEARA"
     gene            complement(13958..>14723)
                     /locus_tag="VLM17_07565"
     CDS             complement(13958..>14723)
                     /locus_tag="VLM17_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012481646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HSR65440.1"
                     /translation="AASPDVVVLDPARPAAAGIATPVALDLTLALGKDVRLDGYGLAG
                     TLAGSLHVRSAPARAMSATGTLEVGGRYTAYGQKLDITRGRLSWNNSPIDDPLLDLRA
                     ERDVGDVTAGIDVSGHATRPQADVWSDPATDQSQALALLALGRPLSSASEQETRQVNA
                     ASAALSAGGSLLASQLGARLGLDTAGVGDSRALGGSVLGIGKYLSPRVYVGYGVSLLG
                     SGQVLTLKYLIRRGVDVEIESSTVENRASLNWRKEK"
BASE COUNT         1953 a         5561 c         5325 g         1884 t
ORIGIN      
        1 gcgcatccgg actcggtgcc gatcaaccgc ctggtgcagg tcgaaggcac gccgctcgcg
       61 ggcacgaagg aactcgatcc gttcgagttc gtgcgcacga tcgccgtcgc ccgcctgctg
      121 atgccacgct cgatggtgcg cctgtcggcc ggccgggaaa cgatgagcga cgaactgcag
      181 gcgttgtgct tcctcgctgg cgccaactcg attttctacg gcgagaagct gctcaccacc
      241 ggcaatccgg ataccgaccg cgaccaggcg ttgttcgcgc ggctcggcct caagccgatg
      301 cacgttgccg agcagcacgc cgacaccgcg cctgccggcc tgtgcggcga gaccgtgcac
      361 gccgcgatca ccgcggacgc cggcgccgcc tgaacatggc gcggccctcg ctgcccgagc
      421 gcatcgccgc gcagcgcgcg cagcgcgagg cgctggatcg cgttcgcgtg cggcgcacgg
      481 tcgcgcggcg cgacggcgtc cgttgtcacg tgcttgatga aagcggcgac ggccgctggc
      541 tggtcaactt ctgcagcaac gactacctcg gcctcgcgca gcagttcgcc gtcgccggcg
      601 cgctgcagga cgcggccgcg cagcacggcg cgggcagtac ggcctcgcac ctggtgtgcg
      661 gccaccacgc gctgcacgaa gcactcgagc acgaactcgc cgactggctc ggcgcgccgc
      721 gcgcgctgct gttcggcagc ggctacctcg ccaacctggc ggtggtgcag gcgctgctcg
      781 gcgacgacga cctgtgcgtg caggaccgcc tcaaccacgc cagcctgatc gacgccgcgc
      841 gcctggccgg ctgccgcctg cgccgctatc cgcataacga cgccgaaggc gcgttgcgcc
      901 agctgcgcgc ctcgcccgac gtggcggcgc tggtcgccac cgacggcgtg ttcagcatgg
      961 acggcgacat cgcgccgttg cgcgaacttg cgctggccgc gcgcgtgcag ggcgcagtgc
     1021 tgtacgtcga cgacgcgcac ggcgtcggcg tgctcggccc ggacggccgc ggcagcgtcg
     1081 ccgcggcgga cctcgacgtg caggcggtgc cactgcagct ggccaccctc ggcaaggcgc
     1141 tcggcggcta cggcgcggtg gtgctcggcg acgcggcgtt ggtcgggcac ctggcggaga
     1201 ccgcgcgccc gtacatctac accaccgcgc tgccgccggc gctcgccgcc gcctcgctgg
     1261 ccgcggtgaa gctggcgcgc aaggacgcat ggcgacgcga gaagctgcag gcgcacgtcg
     1321 cgcgtttccg cgggggcgcc gcgcgcgccg gcttcgagct gctgccctcg cagaccccga
     1381 tccagccgct ggtcgtcggc gacgaccgcc gcgcgctcgc gctcgccgcg gcgctggagg
     1441 agcgcggcta ctgggtcgcc gcgatccgtc cgccgacggt gccagaaggc agcgcgcgcc
     1501 tgcgcatcac cctgagcgcc gcgcacaccg atgccgacgt cgacggcctg ctcggcgcgc
     1561 tcgcggtcgc gcgcgccgaa ctcgaccggc agccgcgatg acgccgtcgc acgacgcccg
     1621 ccgcgcgctc gcggcgatgg ccttcgcgct gctgtcggcg ctgttcttca ccatgaccta
     1681 cgtgctcaac cgcgccagcg cggacgtcgg cgggcactgg gcatggaccg ccgcgctgcg
     1741 ctacctgatc accctgccgc tgctgctgcc gctgatgccg tggcagggcg gcgtcgcgcc
     1801 ggtgtggcgc gcgctgcgcg cgcatccggg cgcatggctg cgctgcagcg cgatcgggtt
     1861 cgtcgccttc tacctgctgc tcgcctacgc ggcggacagc ggcccggcgt ggctggtcgc
     1921 gggcagcttc cagttcaccg tgatcgccgg gatgctgtgc gcgccactga tctaccgcga
     1981 tgcgcgccgg cgcgtgccgg tcgcggcgct tgcggtcggt gcgctgatct tcgccggggt
     2041 gcttctgctc cagttcggcc acgcgcacgg cgggctcgac cgcgccggct ggatcgcgct
     2101 cgcctgcgtg ctcgcctcgg cggtgctgta tccgctcggc aaccgcctgc tgctgctgca
     2161 cctggagcgc agcggcgagc cgctcaacgc gacccagcgc gtgttcggca tgaccctcgc
     2221 gagccagccg ctgtggtggc tggtcgcggc ctacgcctgg acccgggccg gtgcgccccc
     2281 gccgacgcag gtctggctgg ccggtggtgt cgcgctcagc gcgggcgtga tcgcgaccat
     2341 cctgttcttc gaggccaccg gcatggtgcg cgacctgccg gcggcgctcg gcgcggccga
     2401 ggcgatgcag gcggccgagc tgctgttcgc cagcgtgctg ggtgcgttgt tcctgcacga
     2461 agcctggccg cgcgggatcg cgttgtgggg cgcggcgctg gtcgtcgccg gcatcgtcgc
     2521 cttcgcgctg ctggtggcgc ggccgcagcc ggtggcggaa acgcgcgcgt tgcgcacgga
     2581 ccgcggcgca tgagcctggg cgcgcccttg catgtcgacg tggccggcgc cggcccgccg
     2641 ctggtgctgc tgcacggctg ggcgatgcac ggcggcgtgt tcgcgccgct ggtggcgcgc
     2701 ctccgccacc ggttcacgct gcacgtcgtc gacctgccgg ggcacggcct cagccgcgac
     2761 agcggcgtgc cgctcgcgct cgacgcctgc gtcgaggcga tcgccgcgca ggtgccggcg
     2821 gcgccgtggt gcggctggtc gctcggcgga ttgctggccc tgcatgcggc ggcgacgcgg
     2881 cccgtccgcg tgccggcgct ggcgatgctg tgcgcgagtc cgcgtttcgt gcgcggcccg
     2941 gactggcgtt acggcgtgtc gtcggagatc ttccgcgact tcgccagcgg gctgcgcgcc
     3001 gactaccgcg gcaccctcga ccgcttcatc gccctggaag ccttcggctc cgaccacgcg
     3061 aaggaggaga tccgcacgct gcgcgatgac ctgttcgcgc gcggggaacc atcgggagtg
     3121 gtgctggccg acggcctcga actgctcgaa accgcggacc tgcgcggcgc gctgccggcg
     3181 ctcgcggcgc ccagcctgtg gctcgccggc cgccgcgacc gcctggtcga tccgcgcgcg
     3241 atgcgcgagg ccgccgcgct cgcgccgcac gccgtcctgc acgtgctcga acacgccggc
     3301 cacgcgcctt tcctcaccca tgccgacgaa gtcgccgcgc agctgtgcgc cttcctcgcc
     3361 gaccacgccg catgaaccag ccgctcttcg acacccgcca cgtccgccgc gccttcgccc
     3421 gcgccgccgc cggctacgac gcggccgcgc ggctgcagca cgaggtcgaa gcgcgcctgc
     3481 tcgagtcgct ggccttccac gaggcgaccc cggcgaccgt cctcgacgtc ggctgcgggc
     3541 ccggccgcgc cagcgccgcg ctgcaggaac actggccgaa ggcgcgcgtg ctcgcgctcg
     3601 acctcgccct gccgatgctg cgcgcggcgc gccgcaccgc cggcggctgg cggccgttcg
     3661 cgcgcaggcc gcagcccctg tgcgccgacg tgcgcgcgct gcccttcgcc ggcagcagcg
     3721 tggacgtggt gttctccaac ctgtgcgtgc agtgggtcga ggacctgccg gcgctgttcg
     3781 ccgaactgcg ccgggtgctg cgcccgggcg gtttgctgct gctgtccacc ttcggcccgg
     3841 aaaccctgca ggaactgcgc gaggcgttcg cccaggccga cgccgcgccg catgtcagcc
     3901 cgttcgcgga catcgcccgc ttcggcgatg cgctgatgca tgccggcttc cgcgacccgg
     3961 tgctcgaccg cgacgtgctc gccacgcatt acccggacct cgccgcgctg atgcgcgagc
     4021 tgcgcgcgat cggcgccacg aatgcgctcg cgacgcgccg gcacacgctc accggcaggt
     4081 cgcgcttcgc cgccgcggcg gcggcctacg aaacgctgcg caccggcgcc ggcctgccgg
     4141 cgacgtggga agtgatcacc gccatggcgt gggcgccgca ggaaggccag ccgatccgcg
     4201 agggtggcat ggacgtggcg cgcatcagtg ccagccgcat tcccgtgcgc cggcgctgat
     4261 cagcgcccgg ccaggcgcac gcggaacagc acccggccct ggtagggcgc gccctgcggc
     4321 accgcgtcga tgccgagcga ggcgagcttg tcgcgggtcg cctgccagcg ctcctgcttg
     4381 gtgatccaga gcgcgttgcc gtcgaagtcg tcgccgatct cgtcggcgat gctctcgtcg
     4441 tattccgggt tgaagcgcgc gcccggctgc ggctcgatcg acaccttctc cacttcggcc
     4501 ccgagcgtga ggtgcaggcc atagcgggcc atgtcctgca cgatcaccac ctggctgatc
     4561 gggcccggcg cccgtgcatg gatctcgcgc gcccatgccg acgcatcctt gtgcgtggac
     4621 cagcgcgcgg cggcgaactc ggccgccagc accagcaccg cgagcacggc gaagcccggc
     4681 cagcgcggaa gcccgcgtcc ttccgagaag cgctggcgcg cggcgatcac cgccagcggc
     4741 accgccagcg gcagcacgta cagcggcagg cgcgagcgcg acacgcagaa caccagcagc
     4801 ggcagcagca gccacagcgc gagcagcagg cccgcggcat cgtgcgcgcg cccctcgcgg
     4861 ctgcgccagc cacgcacccg ccccggcagc gcgcgcgccc agcgcagcag cgcgaaggtc
     4921 cacggcagcg tgccgagcag cagcgtcggc ccgtagatcg tcagccagcc gtaccactcg
     4981 ccgtggcggc cgaactcgtt cgacgcgacg cggccgacca cctcgctgcc gaggaagtac
     5041 tgcagcaggc ccggattgcg ctgcacgacg accaggtacc agggcagcgc gatcgccacg
     5101 aacgcgagca ggcccgtcca ttgcagcagc gccggtcgtt gccggtcgcg cgccagcagc
     5161 tcgaacgcca ccaccgccag cagcggcagc aggcccggcg ggcccttggt gaggaacgcg
     5221 agggcgaacg ccgcccacat cgccgcgagc cagcgccgtg cctgagccgc gccgtcgggc
     5281 gacatgccgc cgaagcgcgc ctccacgaac gcccacatcg ccagcgcctc gcaggcggcg
     5341 agcacgtaat cggtggtgat cagctgcgag gcgccgatgg tgaacagcat cgtcgcgaac
     5401 accagcgagg cctgcgcctc gctgccgggc gccagccggc gcgcgatgcg cccggccagc
     5461 cacacgcaca gcaggtagga cagcgcggcc ggcaggcgcg ccgcccaggc gttgtggccg
     5521 aacacgccga cgctggcggc gatcgcccag taggtcagcg gcggcttggt ccagtggccg
     5581 acctcgctgc tgcggtgcgg gtcgatccag tcgccgctgt cgagcatgtg cagggcgacg
     5641 ttggtatagc ggccttcgtc cggatcccag atgccgcgat ggccgagcag cgcgagcgcg
     5701 aggaccagcg ccagcgcgcc gatccagacc ggaccgggcc agaaacgggg ggaacgcagc
     5761 agtcgggaca tggcgatggc gggcgcggcg ggacgcccag tctagccggc gcggcgcgcg
     5821 cgcctgtccg ttccgacgct agagcatccg gcgcagggtg tcgtcgcggc ggccccagtg
     5881 gtgccacagc gcagcggcga cgtgcgcacc gatcacccag tagaacagct cgccgatcgt
     5941 ctcgtgcagt tcctcgagcg tgtgcgcgag cgattcgttc tccggcagca gcgcgggcag
     6001 cgcgacgccg gtgaacggca ccagcagcac cttgccgtcg ctccatgcgg tggccaggcc
     6061 gagcagcggc atcgccacca ggaacaggta cagggcgagg tgcagcactt tcgacgggac
     6121 cgactgccac gtgggcagcg ccggcgtgat cggggggacg gtcgaccgcg cgcgcaggcc
     6181 cagccgccac agggccagca cgaggatcgc caggccgacc cagaaatgcc cctgcatcat
     6241 cgcggcgcgc ccgccgctgc cacgcgggaa caggccgcgc tgctcgacca gcaggtacac
     6301 cgccagcacc agcagcgcca ccagccagtg caggcggcgc agggcggggc ggtagcgggc
     6361 gacgggcatg gcattcatgg cggggctcgc ggaccggatc gatgcggcga ctctagcgct
     6421 ccgccgtggg cgccgttgtt gaggcaggtc aagccggcgc gcgctggccg ccggcgaaca
     6481 accccggcag ggcatcgagg tcgacgttgc cgcccgacag caggacgccc acgcgctggc
     6541 cggcgaagcg cccgggctgg tccagcaccg cggccagcgc gatcgccgag gacggctcga
     6601 ccagttgctt ggcgcgcgtc cacagcaggc gcatcgcggc gatcgtggcg gcgtcctcga
     6661 ccaccagtgc ctgcgcgccg tgcgcctgca ggaggtcgaa gttgggcgcg ccgagggtgc
     6721 cgcgcaggcc gtcgcagacg gtatccggaa cgaagtcggt gacccgcgcg ccacgcgcca
     6781 gcgaggcggc ggtttccgcc gcgccggcgg gttcggcgag gaacaggcgg cactgcgggg
     6841 cgagcgcggc cagcgccagc gcgcagcccg acgccagccc gccgccgccg acgggcacca
     6901 ccagcgcgtc gaggccgtcg caggcgttga gcagttccag cgccgcggtg ccctggcccg
     6961 cgatcacctg cggatcggtg tacggatgca caagcgtcgc gccggtgtcg ccctgcaccc
     7021 gcgcggccgc ggcctcgcgc gcggcgatcg tcggcgcgca ggcgtgcagc gtcgcaccgt
     7081 aggcctcgat cgcggcgagc ttcgcggcga ccgcgccctg gggcaccacc acgtggcagg
     7141 cgatcccgcg cgtgcgcgcc gcgagcgcca gggccgcgcc gtggttgccc gaggagtgcg
     7201 tgaccacgcc gtgcctggcg atgtcgtcgg ggagtgccca caccgcgttg caggcgccgc
     7261 ggaacttgaa cgccccggcc cgctgcaggt gctcggcctt gagatgcagt tcgcagccgg
     7321 ccagcgcgtc gagcgtgcgc gcgcgcagca ccggcgtggc atgcgcgtgc ggcgcgatgc
     7381 gcgccgcggc gacgaggatg tcggtgaagg caggtgcgcg tgcggtggtg ccgtccatcg
     7441 cgcgatgcta gcagccggcg ccagcccgcc gtcgcccgtt caccggccga tggcggcggc
     7501 cacgggaaat taagcacgga ttcaacgcct gccgccgatg ctgccggaca caggaacagg
     7561 ggctccgacc atgatccgca cactgcttcg cgcgctcgtc ctgcccggac tggcgggcgc
     7621 gctgctcgcc ggctgcgcga ccggctacca ataccgcagc ggacccggcg actactacta
     7681 cggccagccc gagatcgaat accgcgacca aggctggtac ggctacggtg gctacggtta
     7741 tccgtacggc tattacggct ccccgtatcc ctattactac ggtggctatt acgggggtgg
     7801 cttctacgac ccgtactggg atccgtggtt gcaccggcgt cggacgcacc accacgacgc
     7861 cccgccgccg ccgaccggca ccaccacgcc gccgcccccg acgctaccgc ccccacgctg
     7921 gcgcgagcgc gacgatggcg atgcgcgtcc gccgcggccg atcacgccgc cgcgtccgcc
     7981 ggtcgtggtg ccggcgccgc cccgccgcga cgacacgccg gtcttcgtgc cgcgcgaaca
     8041 ccaggaacgc gacgcgcatc gcaaaaccca gccgtgaaaa gcgtttcacg cgcttgcgtt
     8101 gccggggtcg gcaacgcaag ctacgtccgc gactgaccgg ttgcgtcgca ttgcgacacg
     8161 gactgcatcg cgttccatgt cggcgcccgg cgggaatcac ggatcccccc tgttccgctc
     8221 cccgccgggc gccggcgcct ccgcgcggag gcgccccggc gggtggcttc ggccacgcgc
     8281 gcgctcctgg gtagacgttc caggcaggca caaaaaaagg ggccggatgt cccccgacat
     8341 ccgacccctt cgcttccccg gcatgcgcgc ggccagcccc tgttccaaat ccggccgacg
     8401 cccctgacgc ctgccatgcc gggtgcacag gagttatcgc aggaagcgtg ccaaccttga
     8461 ggccgccgcc ccggtccggg tgaaccgttc agtgccccgg ggcccggacg ccgaccccac
     8521 gcgataattc cccgatgacc gattccttcc atcgccatga cgtcatcgtg gtcggcggcg
     8581 gccacgccgg caccgaggcc gcgctcgccg ccgcgcgcac cggcgcgcgc acgctgctgt
     8641 tgacccattc gatcgagacg atcggcgcga tgagctgcaa ccccgccatc ggcggcatcg
     8701 gcaagggcca cctggtcaag gaagtcgacg cgctcggcgg ggtgatggcg cgcgccgccg
     8761 acgccgccgg catccagtgg cgccgcctca acgcgagcaa gggcccggcg gtgcgcgcga
     8821 cgcgctgcca ggccgaccgc gcgctgtacc gcgccttcat ccgccgcgcc gtcgaatcgc
     8881 agcccaacct gaccgtgttc caggccgcgg tcgacgacat cgtgttcgac gacggtcgcg
     8941 tccaggccgt ggtcacgcag acggggttgc gcttcgaagc acccgcggtc gtgctcaccg
     9001 ccggcacctt cctcgccggc aaggtgcacg tcgggcagac cacccatgcc gccggccgcg
     9061 ccggcgatcc acccgcggtc acgctcgcgc agaagctgcg cgcaggcccg ttcgtggtcg
     9121 atcgcctcaa gacgggcacg ccaccgcgca tcgacgggcg ctcgctcgac tattcggtga
     9181 tgcaggaaca gcccggcgac gatccgcgcc cggtgatgtc gttcctcggt tcgatggccg
     9241 accatccgcg ccaggtgtcg tgctggatca cgcacacgag cgagcgcacg cacgaactca
     9301 tccgcggcgc gctcgaccgc tcgccgctgt acacgggcca gatcgaaggc atcggcccgc
     9361 gctactgccc gtcgatcgag gacaaggtgg tgcgcttcgc cgacaagacg tcgcaccagg
     9421 tgttcgtcga gccggaaggc ctcgacgtcg tcgagatcta tcccaacggc atctccacct
     9481 cgctgccgtt cgacgtgcag ctcgaactcg tgcgcagcat ccgcggcttc gagcgcgcgc
     9541 acatcacgcg cccgggctac gcgatcgaat acgacttctt cgacccgcgc gggctgaagg
     9601 cgacgctgga gacgaaggcg gtcgccggcc tgttcttcgc cggccagatc aacggcacca
     9661 ccggttacga ggaagccgcc gcgcagggcc tgctcgccgg cgtcaacgcc gcgcgtttcg
     9721 tgcggcagcg cgagggctgg agcccgcgcc gcgacgaggc ctacctcggc gtgctggtcg
     9781 acgacctggt cacccacggc accagcgagc cgtaccgcat gttcacctcg cgcgccgaat
     9841 accggctgca gctgcgcgag gacaacgccg acctgcggct gaccccggcc ggtcgcgacc
     9901 tgggcctggt cgatgacgcg cgcttcgccg cgttcgatgc caagcgcgag gccatcgagc
     9961 gcgaggccgc gcgcctggcc gccgtgtggg cggcgccgaa caacgcattc ggtcgcgaag
    10021 tcgcggaaac cctcggcgtc gaggtcagcc gcgagaccag cgcgcgcgac ctgctcaagc
    10081 gcccggaact ggactacgcc gcgctgatgc gcgtgccggc gctcgcgccg ggggtggagg
    10141 atgcggcggt cgccgaacag gtcgagatcg gggtgaagta ctccggctac ctcgagcgcc
    10201 agcgcgagga gatcgcgcgg gcgcggcggc acgaaacgac ccgcatcccc gccgcgttcg
    10261 actatgcgca ggtgcgcggg ctgtcggcgg aagtgctgca gaagctcgcg cgcgcgcggc
    10321 cggagaccgt cggccaggcg cagcgcattc cgggcatgac gccggcggcg atctcgctgc
    10381 tgctggtgca cctggcgcgc gggcagcggg tggcgcaggc gggctgaccg cgccgcgccg
    10441 tcgtgccggg cggcgaggca ccgctttttt ccccgttttt caagcccgcc atcggcgggt
    10501 tccttgccgc ctccgcgcga cgatcccgtg cggcgatcgg gccgtgcgcc actggcctat
    10561 catcactgcc ccacgcagga gccagccatg cccaccgtcg cccgcgcgct gctcgtcctc
    10621 gccgtcgcgc tgaccgcctg ccaccgcacc gaggcgccgc cggccaaggc cgagcaaccc
    10681 gggcatggcc ccttcgtcgt gcaggactgg ccgctgccgg tggcgcccgg cgccgccgag
    10741 ccggacctgg tggccgctcc cgacggccgc ctgctgctcg gctggatcag cagcgtgccg
    10801 ggccgccgca atgccctgca gttcagcgat gccgacgccg acggccgctg gcagaccgcg
    10861 ccgcgcacga tcgcggtcgg caacacgctg ctcgccaact gggccaatgc gccgcacctg
    10921 ctcgccacgc ccgacggcgc gctgtgggtg cactggctgc aggcggtggg cgcgggcgaa
    10981 gccaccaacc tcgcgctcgc gcgctcgacc aacgacggct tcagctggag tgcgccgctg
    11041 caggtcaatc ccgacggcga agcgccggcc gaacacggct tcgccgcgtt gtggccggct
    11101 tcgcaggaca cgctcggcat ggcctggctc gccggtggcg ccgaagcggc ggatgcgcat
    11161 gcggcgcacg gcgcgcatgc aggcgcgacc gcgctgcgcg ccgcggtgtt cgaccgcaac
    11221 ctgcagcgca gcgccgagca ggtggtcgac gcgcgcgcgt gcgactgctg tcgcaccgcg
    11281 gtggcgatga ccgcgcgcgg gccgctgctg gtctaccgcg accgcagcga cgcggaggtc
    11341 cgcgacatcg ccgccacccg cttcgacggc catgcgtgga gcaagccggt gccggtccac
    11401 gccgacggct ggaagatggc gggctgtccg gtcaacggcc cggcgatcgc cgcgcgcggc
    11461 aacgatgcgg tggtcggctg gtacaccggc gcgcaggaca agccggccgt gctgctcgcg
    11521 cgcacgcgcg atgccggcga ccacttcgat gcgccggtgg ccgtggacgc gggcgagcag
    11581 gtcgacggcc gcgtcgcgct cgcgctggac gcgcagcagg cctgggtggc gtggctgcgc
    11641 gcggacgccg gcggttcgac cctgtggctg tcgcgttacg ccaccgacct gtcgcacgag
    11701 ctgcagcgct tccaggtcgc gaagctgcat gcgcgcggtc ccgccgccgg ctatccgcag
    11761 ctcgcggtgc gcgcggacgg cgcgtggctg gtgtggaccg acagcatcga cggcgtcccg
    11821 cagctgcgcg gcgcgcacgt cacccgctag gcgcgctgcc cgcgggcggc gaccaggcga
    11881 agcgcgtcgc gcgcgtcgcc gggtcggcct gcacaagccg cgcctgcacg cgcgcgccga
    11941 gcggcagcgg ctcggcgccc tgcagctgcg attcgatcgc cggatcgcgc agcatgacga
    12001 tgccgctgcg cgggtcgttg cgcgccagtt cgaccaccgt gccgtcgaac gcctcgccca
    12061 cccgcggcgc cagcgtgacc gcctcgacca ggtccagcac cgcgcgctcg tagcgcccgg
    12121 cgcgggtgtc cgcggcctgc atcgtcgccg gcagcgccgg cagcgcggcc agcacccagt
    12181 ccggcggcgc ggccttcgcg cacagcgcca cgcacagctc gccgacgtag cggtcggcca
    12241 ggcggcgcag cggcgcggtc gcgtgcgcgt actcggcggc gagcgcccag tgcgccggtt
    12301 gcgccggcac gctgccgtcg aaggcgacgt agcccgcgcc gcgcagcacg gtggtgcagg
    12361 cggtcatcat cgcgacgtcg cgcgggcggg acggatccaa cgagcggatg aagtcggggt
    12421 agtcctgtgc ctccggccag gggatgtcga gggcggcggc ggtacgacgc aggcgcgcga
    12481 tcgcccaggg ctcgggcttg ggcaacgtgc gcagcagccc gaccttcgcc tccaccatca
    12541 ggtgggcggc ggccatgccg gtgagcagcg acaactgttc gttccagtcc tcgacgggat
    12601 ggcgcgcgcg gaacgcgagc ttccactggc cgtcggcgcc gatctccact tcctgttccg
    12661 gcagtggcag gctgatgccg ccgcggcgct gctcgcgctg ccggcgcagt tcgcccaccg
    12721 tgcgcaccag cgcccacaac ggatcggcgc tgccggcgtc gacttctgcc tgcacgccgt
    12781 cgtagtcgag gcgcgcgcgg ctgcgcacgc gcgcgcgccg cacgtcgacc gcgatgccct
    12841 cgccggtggc gtcgaggtcg atcgtccaca ccagcgcgga acgcacctgg tccggcagca
    12901 gcgaggccgc gccttccgac agcaccttcg gatgcagcgg gatcttgccg tcgccgccgt
    12961 acagcgtctc gccgcgcgca tgcgcctcga cgtcgaccgc atcgcccggc gacacgaacg
    13021 ctcccacgtc ggcgatcgca tagaacaccc ggtagccgtc gccctggcgc tgcacgtaca
    13081 gcgcctggtc gaggtccatc gcgcccttcg ggtcgatggt gacgaagggg atgtcggtgc
    13141 gatcgagccc gggcaggcgc ggcgcgcccg cggcgcgcgc ggcggccgcc tccacctccg
    13201 gggggaacgc cagtggcagc tgcatctcgc gcctgatcgc ggcgatgccg tcggcgatcg
    13261 cggtgccttg cggtcgctgg atgcggaggc ggcgggtagg catcagaccg atcctcgtcg
    13321 gggcgcggac gccggtggcc ggccacggta gccgccaccg tggcgacagg acggtgaatg
    13381 caggcgcgtc agcgcggcca cagcagccag agcgccgcga gcccgaccac ccacagggcc
    13441 gcgagcgcga gcgcgaccgc cagcatgatg cgcgccaccc ggccaccggc ctgcatgccg
    13501 aggcgccgcc atgcccacgc cgccagcgcc accgcgagcg cgacgcacgc ccattgccag
    13561 ccgaacgcgc cgccgggcag cgcgccgtcg atcgccggca accaccaggc gagcgcggcg
    13621 caggccaccg ccagcaccac ggcgaggcgg gtggcattcc atcgcggcga cgggccgggc
    13681 atgcagcgat gatgccacgc ggctaggcgc gcgcctcggc cggttcgttc ttgcgcacgc
    13741 cgcgcaggtt ggtgaggaac aggccgacct gcagcgcgac cagcgcccag gcgtggtcgt
    13801 gccagcccca ggcgatccac agcgcgttgc tggcgacgaa gcaccagaac ccccagctgc
    13861 gcttgcgctt gtgctgcgcg ccgaccagcc acgcggcgac cagggtcacc gccatcgccg
    13921 gccactgcag caggtcccat gcatcgaacg cgaccattca cttctccttg cgccagttga
    13981 gcgaagcgcg gttctcgacc gtgctcgact cgatttcgac gtccacgccg cgacggatca
    14041 ggtatttcag cgtcagcacc tggccgctgc cgagcagcga gacgccatag ccgacgtaca
    14101 cgcgcggcga caggtacttg ccgatgccga gcacgctgcc gccgagcgcg cgcgaatcgc
    14161 cgacgccggc ggtgtcgagg ccgagcctgg cgccgagctg cgaggcgagc aggctgccgc
    14221 cggccgacaa cgccgcgctg gccgcgttga cctgccgggt ttcctgctcc gacgcggacg
    14281 acagcgggcg accgagcgcg agcagcgcga gcgcctgcga ctggtcggtg gcgggatcgc
    14341 tccacacgtc cgcctgcggc cgggtggcat ggccgctgac gtcgatgccg gcggtgacgt
    14401 cgccgacgtc gcgttcggcg cgcaggtcga gcagcggatc gtcgatcgga ctgttgttcc
    14461 acgacagccg gccgcgggtg atgtcgagct tctgtccgta cgcggtgtag cggccgccga
    14521 cttcgagcgt gccggtggcg ctcatcgcgc gggcgggcgc gctgcgcacg tgcaggctgc
    14581 cggcgagggt gccggccagg ccgtaaccgt ccaggcgcac gtccttgccg agcgcgagcg
    14641 tgaggtcgag cgcgaccggc gtggcgatgc cggccgcagc gggccgcgcc gggtcgagca
    14701 ccaccacgtc gggcgacgcc gcc
//
LOCUS       DATIQC010000358         2877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_235268, whole genome shotgun sequence.
ACCESSION   DATIQC010000358 DATIQC010000000
VERSION     DATIQC010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2877
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235268"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..1258)
                     /locus_tag="VLM17_07570"
     CDS             complement(113..1258)
                     /locus_tag="VLM17_07570"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011051762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HSR65441.1"
                     /translation="MTRVGILGGGQLARMLALSGAPLGLRFLVMDTVADACAGQFAPL
                     IVGDWRDERALAEFASKVDVATFDFENVPAESAQWLTERVPVFPNPRALATAQDRLAE
                     KTLFRELGIPVPEFAAIASRADLDAALARIGAPSILKTRRLGYDGKGQFRIRALADAD
                     AAWEALGAQANTVGLILEAFVPFERELSVVAVRGRDGEFRAWPLTENWHVDGVLSASL
                     APARADAALVGRAHAHARRLAEALDYVGVFALELFLRDGELLANELAPRVHNSGHWTI
                     EGSETSQFQNHLRAVLGLPLGDTRMVGTACMLNWIGAMPDAGSVLSEPGGHWHDYGKS
                     PRAGRKVGHATLRADGPAALAQALARVGTALGREQQVAPVVARLQDC"
     gene            complement(1269..1784)
                     /gene="purE"
                     /locus_tag="VLM17_07575"
     CDS             complement(1269..1784)
                     /gene="purE"
                     /locus_tag="VLM17_07575"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007971425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HSR65442.1"
                     /translation="MSANPTRSDDRPLVGIVMGSRSDWETMQHAAAKLEALRVPHEVR
                     VVSAHRTPDVLFEYAATARSRGLRAIIAGAGGAAHLPGMLAAKTAVPVLGVPVQSKAL
                     NGMDSLLSIVQMPAGIPVATFAIGNAGAANAALFAAAMLAVEVPEIGDALAAFRARQT
                     EEVVGNDDPRR"
     gene            1842..2111
                     /locus_tag="VLM17_07580"
     CDS             1842..2111
                     /locus_tag="VLM17_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008570984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HSR65443.1"
                     /translation="MDRKLLDILACPATRQPLALLEPRGLELLNRAIAAGALKRVDGS
                     TQADPLREALVTRDRRLAYRIDDGIPVLLVEEGLATGQVADFPRE"
     gene            2108..>2877
                     /gene="nadC"
                     /locus_tag="VLM17_07585"
     CDS             2108..>2877
                     /gene="nadC"
                     /locus_tag="VLM17_07585"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019186190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HSR65444.1"
                     /translation="MSGVPIDFAPPPAADVAGDVARALAEDLGSGDVTAQLLPDGADV
                     AYLLCKEDAVVCGRPWFDTCHRALDPAVRIDWRVAEGDRVAAGSVLATLAGRTRALVS
                     AERTALNFLQTLSGTATTTAHYVDALRGTGTRLLDTRKTLPGLRVAQKYAVRVGGGCN
                     HRIGLFDAVMLKENHVRAAGSIAAAIAAARALHPALPLIVEVETLAELEDALHAGCTR
                     VLIDDFDADMRREAVRIARGAPFDGRIPLEVSGSVGLEG"
BASE COUNT          381 a         1061 c         1071 g          364 t
ORIGIN      
        1 tgcaggcgtg cgaccaccgg tgcgacctgc tgagcgttcg cccgaccccg gcgggacggc
       61 cggctcgccc ggccgttttt tcgcccgggc gacgcgctct ccgcggaacc gctcagcaat
      121 cctgcaggcg cgcgaccacc ggcgcgacct gctgctcgcg ccccagcgcc gtcccgacgc
      181 gcgcgagcgc ctgcgccagc gccgccggcc catcggcgcg caacgtcgcg tgtccgacct
      241 tgcggccggc gcgcggcgac ttgccgtagt cgtgccagtg gccgccgggt tcggacagca
      301 ccgagccggc atcgggcatc gcgccgatcc agttgagcat gcaggcggtg cccaccatgc
      361 gggtatcgcc gagcgggagg ccgagcaccg cgcgcaggtg gttctggaac tgcgaggtct
      421 cgctgccctc gatcgtccag tggccggagt tgtgcacgcg cggcgcgagt tcgttggcga
      481 gcagctcgcc gtcccgcagg aacagttcga gcgcgaacac gccgacgtag tcgagggctt
      541 cggccaggcg tcgcgcgtgc gcgtgcgccc gcccgaccag cgccgcgtcc gcgcgcgccg
      601 gcgcgaggct ggcggacagg acgccgtcga cgtgccagtt ctcggtcagc ggccaggcgc
      661 ggaattcgcc gtcgcggccg cgcaccgcga ccacgctgag ctcgcgctcg aacggcacga
      721 aggcctcgag gatcaggccg acggtgttcg cctgcgcgcc gagggcctcc cacgcggcgt
      781 cggcatcggc gagcgcgcgg atgcggaact ggcccttgcc gtcgtagccc aggcgccgcg
      841 tcttgaggat cgagggcgca ccgatgcgcg cgagcgccgc atcgaggtcc gcacgcgagg
      901 cgatcgcggc gaattccggc accgggatgc cgagttcgcg gaacagcgtc ttttcggcca
      961 ggcggtcctg cgcggtggcg agcgcgcgcg ggttggggaa caccggcacg cgctcggtca
     1021 gccactgggc cgattcggcc ggcacgttct cgaaatcgaa ggtggccacg tcgaccttcg
     1081 acgcgaactc cgccagcgcg cgctcgtcgc gccagtcgcc gacgatcagc ggcgcgaact
     1141 gcccggcgca cgcgtcggcg acggtgtcca tcaccaggaa gcgcaggccg agcggcgcgc
     1201 cggacagggc gagcatgcgg gccagctgcc cgccgccgag gatgccgacc cgggtcactg
     1261 cacgcccctc accggcgcgg gtcgtcgttg ccgacgactt cctcggtctg gcgcgcgcgg
     1321 aacgcggcga gggcatcgcc gatctccggg acctcgaccg cgagcatcgc cgccgcgaac
     1381 agcgccgcgt tcgcggcgcc ggcattcccg atcgcgaacg tggcgaccgg aatgcccgcc
     1441 ggcatctgca cgatcgacag cagcgaatcc atgccgttca gcgccttgct ctgcaccggg
     1501 acgccgagca ccggcaccgc cgtcttcgcg gcgagcatgc ccggcaggtg cgcggcgccg
     1561 ccggcgccgg cgatgatcgc gcgcaggccg cgcgaccgcg cggtggcggc gtattcgaag
     1621 agcacgtccg gggtgcggtg ggcggacacc acgcgcactt cgtgcggcac gcggagcgct
     1681 tccagcttcg ccgcggcgtg ctgcatcgtc tcccagtcgg agcgcgagcc catcacgatg
     1741 ccgaccagcg ggcggtcgtc ggagcgggtc gggttggcag acatggtggt cccctgtcgc
     1801 aaagacgtat tctaccgggc ccgcgcgacg aagggaccgc catggaccgc aagctgctcg
     1861 acatcctcgc ctgccccgcg acgcgccagc cgctggcgct gctggagccg cgcgggctcg
     1921 agctgctgaa ccgggcgatc gccgcgggcg cgctcaagcg cgtggacggc agcacgcagg
     1981 ccgacccgct gcgcgaggcg ctggtcacgc gcgaccgccg cctcgcctac cgcatcgacg
     2041 acggcatccc ggtgctcctg gtcgaggaag gcctggccac cgggcaggtg gcggacttcc
     2101 cgcgcgaatg agcggcgtgc cgatcgactt cgcgccgccg ccggcggcgg acgtcgcggg
     2161 cgacgtcgcc cgcgccctgg ccgaggacct cggcagcggc gatgtcaccg cgcagctgct
     2221 gcccgacggc gcggacgtgg cctacctgtt gtgcaaggaa gatgccgtcg tgtgcgggcg
     2281 gccgtggttc gacacctgcc atcgcgcgct cgacccggcc gtgcgtatcg actggcgcgt
     2341 ggccgagggc gaccgcgtgg ccgcgggcag cgtgctcgcc accctcgccg gccggacccg
     2401 cgcgctggtc agcgccgagc gcaccgcact gaacttcctg cagaccctga gcgggaccgc
     2461 gaccacgacc gcgcattacg tcgacgccct gcgcggcacc ggcacgcgcc tgctcgacac
     2521 gcgcaagacc ctccccggcc tgcgcgtggc gcagaaatac gcggtgcggg tgggtggcgg
     2581 ctgcaaccac cgcatcggcc tgttcgacgc ggtgatgctg aaggagaacc acgtgcgcgc
     2641 cgcgggctcg atcgccgcgg cgatcgcggc ggcgcgcgcg ctgcatccgg cattgccgct
     2701 gatcgtcgag gtggagacgc tggcggagct ggaggacgcg ctgcatgccg gctgcacgcg
     2761 ggtgctgatc gacgacttcg acgcggacat gcgccgggaa gcggtgcgga tcgcgcgcgg
     2821 cgcgcccttc gacggtcgca tcccgctgga ggtgtccggg agcgtcggcc tggaagg
//
LOCUS       DATIQC010000359         9023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_695050, whole genome shotgun sequence.
ACCESSION   DATIQC010000359 DATIQC010000000
VERSION     DATIQC010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9023
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695050"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VLM17_07590"
     CDS             <1..454
                     /locus_tag="VLM17_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003476109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1415 domain-containing protein"
                     /protein_id="HSR65445.1"
                     /translation="AVHVKRQVRFVASEATTPAELLEALANELRLLRDTPADEIDTTL
                     LVHPRVLRDFLDYNDFLDAADALVAGLGLEGVLQVASFHPDYRFAGSADDDAANYTNR
                     APHPTLHLLREDSISRAVAAFPDPDAIVARNIATLEKLGVEGWRRLFP"
     gene            complement(462..1163)
                     /locus_tag="VLM17_07595"
     CDS             complement(462..1163)
                     /locus_tag="VLM17_07595"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007805859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSR65446.1"
                     /translation="MRLVKLIANLGYGSRKEVAQLFRAGRITDTAGEVLYADDDVAPA
                     RIRIDGEPLDPAPGLLLMLHKPVGYTCSTRDPGRVVYDLLPPRFRWRKPLLSTVGRLD
                     RDTSGLLLMTDDGALLHRIVSPKTHLPKVYEATLAHALRGDEAALFASGTLLLESEHD
                     PLAPATLEALDACHARLTLTEGRYHQVRRMFAAVGNHVEALHRPQVGALALGDLAPGA
                     WRLLGDADRARLFAA"
     gene            complement(1160..2218)
                     /locus_tag="VLM17_07600"
     CDS             complement(1160..2218)
                     /locus_tag="VLM17_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015472758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HSR65447.1"
                     /translation="MSHADPALDALFLPFAEGRLAWPREGALFLRAREGAALHAVPRT
                     GLVCAQPFKPQADALAHAGFALLDPDTDDGRRWPLVLLLPPRQRSEARAWMARALERV
                     APGGVVVASQPNDEGAKSGQADFARIAGAVHVLSKHHCRTYWSAPLEAAADPALAAEW
                     RALDAPRPLADPRLPPGRWLSRPGVFAWDRIDAGSALLAAHLPGDLAGVAADLGAGWG
                     YLAAVLLERNPGIHALDLYEADARALALARDNLGPYARRAALGFHWHDVTAGLAHRYD
                     VIVSNPPFHAQDRADRPELGQRFIAAAAQALAPRGRLWLVANRHLPYEAALGAHFARV
                     RTIAQADGFKVVEAVRGP"
     gene            2366..2629
                     /locus_tag="VLM17_07605"
     CDS             2366..2629
                     /locus_tag="VLM17_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65448.1"
                     /translation="MRALFVGGLVDNSELDFDDGMPPRHYPENTGAGQSRYRLYQLGR
                     QGNETIAYAVYAAPDLAEEVIDRIIDERDYPRRFEATPAPPPA"
     gene            complement(2637..3002)
                     /locus_tag="VLM17_07610"
     CDS             complement(2637..3002)
                     /locus_tag="VLM17_07610"
                     /inference="COORDINATES: protein motif:HMM:NF023039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3247 family protein"
                     /protein_id="HSR65449.1"
                     /translation="MTRVAPRVHIRNEEIALLEAIALQLPQNERVQLRLADGRELTGT
                     VTQMPTVQSFFDPEGREGTNAILRLDTFLDDGRPHDGGRYDIWLDDIDGVTRVPDPSP
                     PEPSARIAPPDPNAPTPVP"
     gene            complement(3066..4385)
                     /locus_tag="VLM17_07615"
     CDS             complement(3066..4385)
                     /locus_tag="VLM17_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005992132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HSR65450.1"
                     /translation="MRDQVRRTALLLACALFVAGCGESARLNVRDGSGPAPVLPAPVH
                     RLFPTVHIAPAAGWPAGAMPVPAPGFAVQAFARGLDHPRWLHVLPNGDVLVAETDAPP
                     RPGDARGFKARVMHLLMRRVGAGRPSADRITLLRDADGDGVAETRSVFLAGLHSPFGM
                     ALAGDTLYVANADALVRVPYRTGAMRSEATPAAVTALPGGPINHHWTKSLLASRDGTR
                     LYVGVGSNSNVGDNGMAAEAERAAIWDIDPATGAHRVYASGLRNPVGMDWQPDSGQLW
                     VAVNERDELGSDLVPDYMTAVREGAFYGWPYSWYGRHVDARAQPPRPDLVARAVVPDY
                     ALGPHTASLGLAFYSGALLPARFRGGAFVGQHGSWNRRPFSGYRVVFVPFAAGRPSGL
                     PEDVLTGFVDEAGHARGRPVGVAVARDGAVLVADDVGGTVWRLVPAR"
     gene            complement(4450..4911)
                     /locus_tag="VLM17_07620"
     CDS             complement(4450..4911)
                     /locus_tag="VLM17_07620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65451.1"
                     /translation="MSIHRFEPRPDDLVDEQEWQLQERALREERDGAPAGEDPALAQY
                     RQVARALRAPPPVALPADFAAGVASRAAARAQADGRFEQVLTQLLLAALAFAGVAAAM
                     VWGGEWWRASSTLLPSPQRLGLAVPWGLAIAACLGLSWATEQLRRRGPLHH"
     gene            complement(4908..5471)
                     /locus_tag="VLM17_07625"
     CDS             complement(4908..5471)
                     /locus_tag="VLM17_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR65452.1"
                     /translation="MTDDRALVTAVLANAPGAFEQLVREYQGLAWHIIQRMVRHPEDT
                     RELCQEAFLRVHRCLHQYRFDAPLKSWIGQVAYSMAKRHLERKRLPLVEAEDEEGTPL
                     LERVGDDFDLEGAVGDEQVARELHAAIERLPPVQRTVLTLYHLDDVPIAEISRITGLA
                     EGTIKSHLFRSRQRLRELLAPRMGVAA"
     gene            5595..5924
                     /locus_tag="VLM17_07630"
     CDS             5595..5924
                     /locus_tag="VLM17_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65453.1"
                     /translation="MNSGDLIPIVLFISIAWTIKAVVDARLRARIIDSNGSQELVRSM
                     IESDELRRRHASLRNGVVLLALGIGFAAINGNGGFDNFTPLSLAILLGATGLGNLAYY
                     LVARRAA"
     gene            complement(5976..7172)
                     /locus_tag="VLM17_07635"
     CDS             complement(5976..7172)
                     /locus_tag="VLM17_07635"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR65454.1"
                     /translation="MGIRRELFAGEVLYRQGDASDCAWLIEQGAVELVSVQGRRTVQH
                     GVLGPGELIGELSMLDGAPRSATATARGDAVLLAVEHDQFLERLESGDPIVRTLVDSL
                     RRRMRALMASLPEDVALPAEDVAIDDPDERSGIGKIRLESQLREALDDGTLEVRYQPI
                     HDLHAGAVRSFEALVRWQLPGRGPVSPAEFIKLAEETSLIVPVGEYVLDRVVEVLVAL
                     RDQGVAPLPSIAVNLSARQLVEPGMARQIVQRVQRARLPEGALKLEVTESRMLDYAPV
                     AAVMRHCREHGIPFALDDFGTGYSNLTHLHRLDFEFVKVDQAFCRQMFDSPRAMAIVE
                     AIVAMAHGIGAQVIMEGVETREQLEALGRLGVRHAQGYLVGQAAPVHEVLSGEAARGL
                     ERAAAG"
     gene            complement(7249..8031)
                     /gene="ubiE"
                     /locus_tag="VLM17_07640"
     CDS             complement(7249..8031)
                     /gene="ubiE"
                     /locus_tag="VLM17_07640"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HSR65455.1"
                     /translation="MSEPEPAGTTHFGYREVPTGEKQKLVGEVFSSVAGKYDLMNDLM
                     SLGVHRVWKRYFVATAQVKRGDRVLDLAGGTGDIAALLHERVAPRQARGGREEGCVVL
                     GDINGAMLRVGRDRLTDRGLVRGLEYVQCNAEALPFPDASFDLVTIAFGLRNVTDKDA
                     ALGEMQRVLKVGGQARILEFSQVTADWFKPVYDFHSFQVLPRLGRLFAHDAGSYQYLA
                     ESIRRHPPQDELKAMMERAGFARCGYRNLNAGIVAIHTGYKA"
     gene            8151..8654
                     /locus_tag="VLM17_07645"
     CDS             8151..8654
                     /locus_tag="VLM17_07645"
                     /inference="COORDINATES: protein motif:HMM:NF025852.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR65456.1"
                     /translation="MTARTLLLPLALLPLALLAAPGDKTRPASHATSQHAMADADQVK
                     WGPGPAGLPAGAQAAVLWGDPGKAGPFVLRLKAPPGYRVGRHWHPSDELVTVVEGDFH
                     LDMGSGGEAHSHDFSAGGYALLPGKMQHAASSRGGGVVQVTGMGPFEIHYVDPKDDPR
                     TGKPKAR"
     gene            8831..>9023
                     /locus_tag="VLM17_07650"
     CDS             8831..>9023
                     /locus_tag="VLM17_07650"
                     /inference="COORDINATES: protein motif:HMM:NF039409.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6328 family protein"
                     /protein_id="HSR65457.1"
                     /translation="MVLPGMQALFGFQLIVVFSERFGVELTHGEQRVHLLAIGLVALA
                     IALIMTPAAYHRQTDPEQVT"
BASE COUNT         1237 a         3343 c         3255 g         1188 t
ORIGIN      
        1 ggcggtgcac gtgaagcggc aggtgcgctt cgtcgccagc gaggcgacga cgccggcgga
       61 gctgctggag gcgctggcca acgagctgcg gctgctgcgc gacacgccgg ccgacgagat
      121 cgacaccacg ctgctcgtgc acccgcgggt gctgcgcgac ttcctcgact acaacgactt
      181 cctcgacgcc gccgacgcgc tggtcgccgg actcggcctg gaaggcgtgc tgcaggtggc
      241 gagcttccac cccgactacc gcttcgccgg cagcgccgac gacgacgccg ccaactacac
      301 caaccgggcg ccgcacccca ccctgcacct gttgcgcgag gacagcatca gccgcgcggt
      361 ggcggcgttc ccggatccgg atgcgatcgt cgcgcgcaac atcgccacgc tggagaagct
      421 tggcgtggag ggatggcggc ggttgttccc gtagccggcg ctcaggccgc gaacagccgt
      481 gcgcggtcgg cgtcgcccag caaccgccat gcgccgggcg cgaggtcacc cagcgccagc
      541 gcgccgacct gcgggcggtg cagcgcttcg acgtggttgc cgaccgcggc gaacatgcga
      601 cgcacctggt ggtagcggcc ttcggtcaag gtcagccgcg catggcacgc gtccagcgct
      661 tccagcgtgg ccggcgccag cggatcgtgt tcggactcga gcagcagcgt gccgctggcg
      721 aacagcgccg cttcgtcgcc gcgcagcgcg tgcgcgaggg tcgcctcgta caccttcggc
      781 aggtgcgtct tcggcgacac gatccggtgc agcagcgcgc cgtcgtcggt catcagcagc
      841 aggccgctgg tgtcgcggtc gagccggccg acggtggaca gcagcggctt gcgccaacgg
      901 aagcgcggcg gcagcaggtc gtagacgacg cggcccggat ccctggtgga gcaggtgtag
      961 ccgaccggct tgtgcagcat cagcagcagg ccgggcgcgg gatcgagcgg ttcgccgtcg
     1021 atgcggatgc gggcgggcgc gacatcgtcg tcggcgtaca gcacttcgcc cgcggtgtcg
     1081 gtgatccggc cggcgcggaa cagctgcgcg acctccttgc ggctgccgta gccgaggttg
     1141 gcgatcagtt tcaccagcct catgggccgc gcaccgcttc gaccaccttg aagccgtcgg
     1201 cctgcgcgat ggtgcgcacg cgggcgaaat gcgcgccgag cgcggcctcg tacggcaggt
     1261 ggcggttggc caccagccac agccggccgc gcggcgccag cgcctgcgcc gcggcggcga
     1321 tgaagcgctg gcccagttcc gggcggtcgg cgcgatcctg cgcgtggaac ggcggattgc
     1381 tgacgatcac gtcgtagcgg tgcgccagcc cggcggtgac gtcgtgccag tggaagccga
     1441 gcgcggcccg ccgcgcgtac ggcccgaggt tgtcgcgcgc cagcgccagc gcgcgcgcgt
     1501 cggcttcgta caggtcgagc gcatggatgc cggggttgcg ctcgagcagc accgcggcga
     1561 gatagcccca gccggcgccg aggtcggcgg cgacaccggc gaggtcgccc ggcaggtgcg
     1621 ccgcgagcag cgcggagccg gcgtcgatgc ggtcccaggc gaacacgccc gggcggctca
     1681 gccagcgccc gggcggcagg cgcggatcgg cgagcgggcg cggcgcgtcc agcgcgcgcc
     1741 actcggcggc gagggcggga tcggcggcag cctccagcgg cgcgctccag tatgtcctgc
     1801 agtggtgctt ggacagcacg tgcaccgcac cggcgatgcg cgcgaagtcc gcctggccgc
     1861 tcttcgcgcc ttcgtcgttg ggctggctgg cgacgacgac gccgcccggc gcgacgcgct
     1921 ccagcgcacg cgccatccag gcccgcgcct cgctgcgctg gcgcggcggc agcagcagca
     1981 ccagcggcca gcggcggccg tcgtcggtat ccgggtcgag cagcgcgaac ccggcgtgcg
     2041 cgagcgcgtc ggcctgcggt ttgaacggct gcgcgcagac gaggccggtg cgcggcacgg
     2101 cgtgcagggc ggcgccctcg cgcgcgcgca ggaacaaggc gccctcccgc ggccaggcga
     2161 gccggccttc ggcgaagggc aggaacagcg cgtcgagcgc gggatcggcg tgggacatgg
     2221 cgcgattcta cggaggaacg cgttttcccc gacggccgcg cgttgccgcg gccggtcgcg
     2281 gcgaccggga cttcaccgcg ccctgacgcg cgcttgatgc gccaacggcg aggatgtgcg
     2341 catggcagaa cggaggagca gcctcatgcg tgcactgttc gtgggtggac tggtcgacaa
     2401 cagcgaactg gacttcgacg acggcatgcc gccgcggcac tacccggaga acaccggcgc
     2461 ggggcaatcg cgctaccggc tctaccagct cggccgccag ggcaacgaaa cgatcgccta
     2521 cgcggtgtac gccgcgcccg acctcgccga ggaagtgatc gaccgcatca tcgacgaacg
     2581 cgactaccca cgacgcttcg aggcgacgcc ggcgccgccg ccggcgtgag cgtgcgtcag
     2641 ggcacgggcg tcggcgcgtt cggatccggc ggcgcgatgc gggcgctcgg ctcgggcggc
     2701 gacgggtccg gcacgcgggt gaccccgtcg atgtcgtcca gccagatgtc gtagcgaccg
     2761 ccgtcgtgcg ggcggccgtc gtcgaggaag gtgtccagcc gcaggatcgc gttggtgccc
     2821 tcgcgccctt ccggatcgaa gaacgactgc accgtcggca tctgcgtcac cgtgccggtc
     2881 agctcgcggc cgtcggccag gcgcagttgc acgcgctcgt tctgcggcag ctgcagggcg
     2941 atcgcctcga gcagcgcgat ctcctcgttg cggatgtgca cccgcggcgc gacccgggtc
     3001 atggcgtgat ctccgcgaag gctccggtgc acgctagccg cgcgcgcggc aagcagcggt
     3061 gaagctcagc gcgcgggcac cagccgccag accgtgccgc cgacatcgtc ggcgaccagc
     3121 accgcgccat cgcgggcgac ggcgacgccg accgggcggc cacgggcatg gccggcctcg
     3181 tcgacgaagc cggtgagcac gtcttcgggc aggccgctcg ggcgccccgc ggcgaacggc
     3241 acgaacacca cccggtagcc gctgaacggg cgccggttcc acgagccgtg ctggccgacg
     3301 aaggcgccgc cgcggaagcg cgccggcagc agcgcgccgc tgtagaaggc gagccccagc
     3361 gaggcggtat gcgggccgag cgcgtagtcg ggcacgaccg cgcgcgcgac caggtccggc
     3421 cgcggcggct gcgcgcgcgc atccacgtgc cggccatacc agctgtacgg ccagccgtag
     3481 aaggcgccct cgcgcaccgc ggtcatgtag tcgggcacga ggtcgctgcc gagttcgtcg
     3541 cgttcgttca ccgccaccca caattgaccg ctgtcgggtt gccagtccat gccgaccggg
     3601 ttgcgcaggc ccgaggcgta cacgcgatgc gcgccggtgg ccggatcgat gtcccagatc
     3661 gccgcgcgtt ccgcctcggc ggccatgccg ttgtcgccga cgttgctgtt ggagccgacg
     3721 ccgacgtaca gccgggtgcc gtcgcggctg gcgagcaggc tcttggtcca gtgatggttg
     3781 atcggcccgc cgggcagggc ggtgaccgcg gccggcgtcg cctcgctgcg cattgcgccg
     3841 gtgcggtacg gcaccctgac cagcgcatcg gcattcgcga catacagcgt gtcgccggcc
     3901 agcgccatgc cgaacggcga gtgcagcccg gcgaggaaca cgctgcgcgt ttccgccacg
     3961 ccgtcgccat cggcatcgcg cagcagggtg atgcggtcgg cgctcggccg tccggcaccg
     4021 acccgccgca tcagcaggtg catcaccctg gccttgaacc cgcgcgcgtc gcccgggcgc
     4081 ggcggcgcat cggtctcggc gaccagcacg tcgccgttgg gcagcacgtg cagccagcgc
     4141 ggatggtcga gcccacgggc gaaggcctgc acggcgaacc cgggcgcggg caccggcatc
     4201 gccccggccg gccagccggc cgcgggcgcg atgtgcacgg tcgggaacag ccggtgcacc
     4261 ggcgccggca gcaccggtgc cgggccgctg ccatcgcgca cgttcaggcg ggccgattcg
     4321 ccgcaaccgg cgacgaacag ggcgcaggcc agcagtagtg ccgtccttcg gacctgatcc
     4381 cgcatgccgc cgctccgtgg agatccgcgt ggagcatggc gggggccgcg tgagcggccc
     4441 gcgagcgggt cagtggtgga gcggcccgcg cctgcgcagc tgctcggtcg cccacgacag
     4501 cccgaggcag gcggcgatcg ccagccccca cggcaccgcc aggcccagcc gctgcggcga
     4561 aggcagcagg gtcgagctgg cgcgccacca ctcgccgccc cacaccatcg ccgcggccac
     4621 gccggcgaag gcgagcgccg ccagcagcag ctgggtcagc acctgttcga agcggccatc
     4681 ggcctgggcg cgcgccgccg cgcgcgacgc cacgcccgcg gcgaagtccg ccggcagcgc
     4741 caccggcggc ggcgcccgca gcgcgcgcgc gacctgccgg tactgcgcca gcgccgggtc
     4801 ctcgcccgcg ggcgcgccgt cgcgttcctc gcgcagcgcg cgctcctgca gctgccattc
     4861 ctgctcgtcg acgaggtcgt ccgggcgcgg ttcgaaacga tggatgctca tgcggcgact
     4921 cccatccgcg gcgccaggag ctcgcgcaaa cgctggcggc tgcggaacag atggctcttg
     4981 atcgtgccct cggcgagccc ggtgatgcgt gaaatctcgg cgatcggcac gtcgtcgagg
     5041 tggtacaggg tcagcacggt gcgctgcacc ggcggcaggc gctcgatggc cgcgtgcagt
     5101 tcgcgcgcga cctgttcgtc gccgacggcg ccttcgaggt cgaagtcgtc gccgacccgc
     5161 tcgagcagcg gagtgccctc ctcgtcctcc gcctcgacca gcggcaggcg cttgcgctcc
     5221 aggtggcgct tggccatcga gtacgcgacc tggccgatcc acgacttcag cggcgcgtcg
     5281 aagcggtact ggtgcaggca gcggtgcacg cgcaggaagg cttcctggca cagctcgcgg
     5341 gtgtcttccg ggtgccgcac catgcgctgg atgatgtgcc aggcgagacc ctggtactcg
     5401 cgcacgagct gctcgaaggc gcccggcgcg ttggccagca cggcggtcac cagggcgcgg
     5461 tcgtcggtca tgggctcagg ggatacgccc accgcccggc cggttgcaag cacccgccgc
     5521 ggcgcccgct gcaaccggcc gccacccggc cgtatccctt gccgcgaacc ccaaccccga
     5581 caggaccacc caccatgaat tccggcgacc tcatcccgat cgtgctgttc atttccatcg
     5641 cctggaccat caaggccgtg gtcgacgccc gcctgcgcgc ccgcatcatc gacagcaacg
     5701 gctcgcagga gctggtccgc tcgatgatcg aaagcgacga actgcgccgc cgccatgcct
     5761 cgctgcgcaa cggcgtggtg ctgctggcgc tgggcatcgg cttcgccgcg atcaacggca
     5821 acggcggctt cgacaacttc accccgctgt cgctggcgat cctgctcggc gcgaccggcc
     5881 tgggcaacct cgcctactac ctggtggcgc gccgggcggc gtgaccccga cgcgggccgc
     5941 gacccggtcg cggcccgcgc gttcctgcac gaggctcagc cggccgccgc gcgctccagc
     6001 ccgcgcgccg cctcgccgga cagcacctcg tgcaccggcg ccgcctgccc gaccaggtaa
     6061 ccctgcgcgt ggcgcacgcc gagccggccc agcgcttcca gctgctcgcg cgtctccacc
     6121 ccttccatga tcacctgcgc gccgatgccg tgcgccatcg ccacgatcgc ttccacgatc
     6181 gccatcgcgc gcgggctgtc gaacatctgc cggcagaacg cctggtcgac cttgacgaac
     6241 tcgaagtcga gccggtgcag gtgggtgagg ttggaatagc cggtgccgaa gtcgtccagc
     6301 gcgaacggga tgccgtgctc gcggcagtgg cgcatcaccg ccgccaccgg cgcgtagtcg
     6361 agcatgcggc tctcggtcac ctcgagcttg agcgcgcctt ccggcagccg cgcgcgctgc
     6421 acgcgctgca cgatctgccg cgccatgccc ggctcgacca gctggcgcgc cgacaggttg
     6481 accgcgatcg acggcagcgg cgccacgccc tggtcgcgca gcgcgaccag cacctcgacc
     6541 acgcggtcga gcacgtattc gccgaccggc acgatcagcg aggtttcctc ggcgagcttg
     6601 atgaactcgg ccggcgatac cggcccgcgc ccgggcagct gccagcgcac cagggcctcg
     6661 aagctgcgca ccgcgccggc gtgcaggtcg tggatcggct ggtagcgcac ttcgagcgtg
     6721 ccgtcgtcga gcgcttcgcg cagctgcgat tccaggcgga tcttgccgat gccgctgcgc
     6781 tcgtcgggat cgtcgatcgc cacgtcctcg gccggcagcg cgacgtcctc cggcaggctg
     6841 gccatcagcg cgcgcatgcg ccggcgcagg ctgtcgacca gcgtgcgcac gatcggatcg
     6901 ccgctctcca gccgttcgag gaactggtcg tgctcgaccg ccagcagcac cgcgtcgccg
     6961 cgggcggtgg cggtggcgct gcgcggcgcg ccgtcgagca tgctcagctc gccgatcagc
     7021 tcgcccgggc cgagcacgcc atgctgcacg gtgcgccggc cctgcaccga caccagctcg
     7081 accgcgccct gctcgatcag ccaggcgcag tcggacgcgt cgccctgccg gtacagcact
     7141 tcccccgcga acagctcgcg ccggatgccc atggtgtcgc cccctgtgtg caatgcgcgg
     7201 cgctccccgc gccgcctcgg atacaacggg ttcgcgcgcc gcgcgcggtc aggccttgta
     7261 gccggtgtgg atggcgacga tgcccgcgtt gaggttgcgg tagccgcagc gggcgaaccc
     7321 cgcgcgctcc atcatcgcct tcagttcgtc ctgcggcggg tgccggcgga tcgattcggc
     7381 caggtactgg tagctgccgg cgtcgtgcgc gaacagccgg cccaggcgcg gcagcacctg
     7441 gaaggaatgg aagtcgtaga ccggcttgaa ccagtccgcg gtcacctgcg agaactcgag
     7501 gatccgcgcc tggccgccca ccttcagcac gcgctgcatc tcgccgagcg cggcgtcctt
     7561 gtcggtgacg ttgcgcaggc cgaaggcgat cgtgaccagg tcgaagctcg catcgggaaa
     7621 cggcagcgcc tcggcgttgc actgcacgta ctcgaggccg cgcacgaggc cgcggtcggt
     7681 gaggcggtcg cggccgaccc gcagcatcgc gccgttgatg tcgccgagca ccacgcatcc
     7741 ttcttcccga ccaccccgag cctgtcgcgg ggcgacgcgt tcgtgcagca acgcggcgat
     7801 gtcgccggtg ccgccggcga ggtcgagcac gcggtcgccg cgcttcacct gcgcggtggc
     7861 gacgaagtag cgcttccaca cccggtgcac gcccagcgac atcaggtcgt tcatcaggtc
     7921 gtacttgccg gcgaccgacg agaacacctc gccgaccagc ttctgcttct cgccggtggg
     7981 cacctcgcgg tagccgaaat gggtggtgcc ggcaggctct ggttcgctca ttcggcgatt
     8041 atcgcaccgc cttaatgcgc cattgcgttc actcgcacgg gccgcccgcg cggtccgccg
     8101 ccgttggcag cgatgcgggc cattccggcc cgcgctccgg agacacgacg atgactgccc
     8161 gcacgctgct cctcccgctc gccctgctcc cccttgcgct gctggccgcg ccgggcgaca
     8221 agacccgacc cgccagccat gccacctcgc agcacgcgat ggccgatgcc gaccaggtga
     8281 aatggggacc cggccccgcc ggcctgccgg ccggcgccca ggccgccgtg ctgtggggcg
     8341 atcccggcaa ggccggcccg ttcgtcctcc ggctcaaggc gccgccgggc taccgtgtcg
     8401 gccgccactg gcacccgagc gacgaactgg tcaccgtggt cgagggcgac ttccacctcg
     8461 acatgggcag cggcggcgag gcccattcgc atgatttcag cgcggggggc tacgcgctgc
     8521 tgccggggaa gatgcagcac gcggcctcga gccggggcgg cggggtcgtc caggtcaccg
     8581 gcatgggccc gttcgagatc cactacgtcg accccaagga cgacccgcgc acgggcaagc
     8641 cgaaggcgag gtgacgggcg cagcgccgcc agacccgtga cggcgcgcgc acgccggctg
     8701 ttgcacaaca cgggcgtcgt tcgcaggaag cgcccgtggc cacgcccgaa cccccgccgc
     8761 acgccccgcc cgccgccgcg cgcggcttcc gctgacccgg caggtcgagt acctgctgga
     8821 ggaatgccgg atggtgctgc ccggcatgca ggcgctgttc ggtttccagc tgatcgtggt
     8881 gttcagcgag cgcttcgggg tcgaactgac ccacggcgag cagcgcgtgc acctgctggc
     8941 gatcggcctg gtcgcgctgg cgatcgcgct gatcatgacg cccgcggcct accaccggca
     9001 gaccgacccg gagcaggtca ccg
//
LOCUS       DATIQC010000360         3623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_271265, whole genome shotgun sequence.
ACCESSION   DATIQC010000360 DATIQC010000000
VERSION     DATIQC010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271265"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VLM17_07655"
     CDS             <1..317
                     /locus_tag="VLM17_07655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR65458.1"
                     /translation="RDAQEGGQGASAAMRQRMQERFQQQFAGFRAMLDAPQRAQWDAA
                     IAGLASARRAPLYRLANGAPERVTVRVGASDGSNTEVAGNLREGERVIVGARSPTPKP
                     AP"
     gene            314..1018
                     /locus_tag="VLM17_07660"
     CDS             314..1018
                     /locus_tag="VLM17_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR65459.1"
                     /translation="MSAVVAHGADAPPVIATRDLRKVYAEGTEAEVVALRDVDLTIHA
                     GEFVAIMGPSGSGKSTLMNLLGCLDSPSAGEYRCDGVDVARLDAEERARLRRDKIGFV
                     FQGFNLLPRMDALENVAMPLAYANVPREERLRRASAALTAVGLAQRMHHLPNALSGGQ
                     QQRVAIARALINQPPLLFADEPTGALDTKTGEEILALFKQLQRDGHTVVLITHEAGVA
                     AHADRTYVMRDGRIGA"
     gene            1136..2371
                     /locus_tag="VLM17_07665"
     CDS             1136..2371
                     /locus_tag="VLM17_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65460.1"
                     /translation="MNFSEILRTAVFALRGNWLRSVLTSLGVIIGIAAVIVMVSVGQG
                     TQAEIDKLVSGLGSNRLDVMGAGGFGGGGARLAAGSRYTLGEGDADAIRKEVPEVQYV
                     AASLRGGTQAVYAENNASTQWQGVQPDWFDINEWKIAGGSGFSPRDYDSAAKSVLLGE
                     TVRRELFGDEDAVGQTVRLGRVPFTVVGTLQPKGQGGFGQDQDDLVVVPLETARRRLT
                     GATALPPGAVQQITLGVGRAEDLSYAQDEVEALLRQRHRIQPGDDDDFNVRNIAEVVA
                     TRTQTTRLMSLLLGAVAGISLVVGGIGIMNIMLVSVTERIREIGLRMAVGAGPSDVRR
                     QFLAEAMLISLVGGAVGIVLGAVGAWLVGRFGSLPVALDAKVIALAAGFSIATGLFFG
                     YYPARKASLLDPIEALRQQ"
     gene            2519..3484
                     /locus_tag="VLM17_07670"
     CDS             2519..3484
                     /locus_tag="VLM17_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HSR65461.1"
                     /translation="MTANATDQPKTALVIHGGAGVIERSHLSAEDEKAIRADLGRALD
                     AGNAILAKGGSALDAVQAAIHVMEDSPRFNAGKGAVFNARGGHELDSAIMEGHTRRAG
                     SVAGVTTVRHPVDLARAVMEHSPHVMLAGAGAEAFADTRAEIERVPNSWFDTDLRRRQ
                     LEQAQADEKQQAALGLPPKKGTYFGTVGAVALDAQGHIAAATSTGGMTNKKWGRVGDS
                     PIIGAGTWADERCGVSGTGWGEFYIRNAVAHDICARVAYRGDSLQAAAEEVVDRIVPA
                     AGGDGGAIALDKDGNIAMPFNTSGMYRGWVKPDGSRGVAIFRDEH"
BASE COUNT          532 a         1261 c         1328 g          502 t
ORIGIN      
        1 cgcgcgatgc gcaggagggc ggccagggcg ccagcgcggc gatgcgccag cgcatgcagg
       61 agcgcttcca gcagcagttc gcggggttcc gcgcgatgct cgacgcgccc cagcgtgccc
      121 agtgggatgc cgccatcgcg gggctggcga gcgcgcgccg cgcacccctg taccggctgg
      181 cgaacggcgc gccggagcgg gtgaccgtgc gggtcggcgc cagcgacggc agcaacaccg
      241 aggtcgccgg caacctgcgc gaaggcgaac gcgtgatcgt cggcgcgcga tcgcccacgc
      301 ccaagccggc gccatgagcg ccgtcgtcgc gcacggcgcc gatgcgccgc cggtcatcgc
      361 cacccgagac ctgcgcaagg tgtatgccga agggacggaa gccgaggtcg tcgcgctgcg
      421 cgacgtcgac ctcaccatcc atgcgggcga gttcgtcgcc atcatggggc cgtcgggttc
      481 gggcaagtcc accctgatga acctgctcgg ctgcctcgac tcgccgagcg ccggcgaata
      541 ccgctgcgat ggcgtcgacg tcgcgcggct cgacgcggag gagcgcgcgc gcctgcggcg
      601 ggacaagatc gggttcgtct tccagggctt caacctgctg ccgcgcatgg atgcgctgga
      661 gaacgtggcg atgccgctcg cgtacgccaa cgtgccgcgc gaggagcgcc tgcgccgcgc
      721 cagtgccgcg ctcaccgcgg tcggactcgc gcagcgcatg caccacctgc cgaacgcgct
      781 gtcgggcggc cagcagcagc gcgtggcgat cgcccgcgcg ctgatcaacc agccgccgct
      841 gctgttcgcc gacgagccga ccggcgcgct ggacacgaag accggcgagg agatcctggc
      901 gctgttcaag caactgcagc gcgacggcca cacggtggtg ctgatcaccc acgaggccgg
      961 cgtcgccgcg cacgccgacc gcacctacgt gatgcgcgat gggcgaatcg gcgcgtagag
     1021 ccgatgctgt cggcatcggc tgcgctgatg agcgcccggc cacggatggc cgggcagggg
     1081 catgcagcac cgcgaggcca cgccatggat ggcatcgtcc agtcatgagg tggctatgaa
     1141 cttttccgag atcctgcgca ccgcggtgtt cgccctgcgc ggcaactggc tgcgcagcgt
     1201 gctgacctcg ctcggggtga tcatcgggat cgcggccgtg atcgtcatgg tgtcggtggg
     1261 acagggcacg caggccgaga tcgacaagct ggtgtcgggg ctgggttcca accggctcga
     1321 cgtgatgggc gccggcggct tcggcggcgg tggtgcgcgc ctcgccgccg gcagccgcta
     1381 cacgctcggc gaaggcgacg ccgatgcgat ccgcaaggag gtgccggagg tgcagtacgt
     1441 cgccgcgtcg ctgcgcggcg gtacccaggc ggtctacgcg gaaaacaatg cctcgaccca
     1501 gtggcagggc gtgcagccgg actggttcga catcaacgaa tggaagatcg ccggcggcag
     1561 cggcttctcg ccgcgcgatt acgacagcgc cgccaagtcg gtgctgctcg gcgagaccgt
     1621 gcggcgcgag ctgttcggcg acgaggacgc ggtcggccag accgtgcgcc tcgggcgggt
     1681 gccgttcacg gtggtgggga cgctgcagcc gaagggccag ggcggcttcg gccaggacca
     1741 ggacgacctc gtggtggtgc cgctggagac cgcgcgccgc cgcctgaccg gcgcgaccgc
     1801 gctgccgccg ggcgcggtgc agcagatcac gctgggcgtc ggtcgcgccg aggacctgtc
     1861 ctacgcccag gacgaggtcg aggcgctgct gcgccagcgc catcgcatcc agccgggcga
     1921 cgacgacgac ttcaacgtgc gcaacatcgc ggaagtcgtc gcaacgcgca cgcagacgac
     1981 ccggctgatg tcgctgctgc tcggcgccgt ggccggcatt tcgctggtcg tcggcggcat
     2041 cggcatcatg aacatcatgc tggtgtcggt caccgagcgc atccgcgaga tcggcttgcg
     2101 catggcggtc ggcgcgggcc cgtccgacgt gcgcaggcag ttcctcgccg aagcgatgct
     2161 gatctcgctg gtcggcggcg cggtcggcat cgtgctcggc gcggtcggcg cgtggctggt
     2221 cggacggttc ggttcgctgc cggtcgcgct ggatgccaag gtgatcgcgc tcgccgccgg
     2281 cttctcgatc gcaacggggc tgttcttcgg ctactacccc gcgcgcaagg cgtcgctgct
     2341 ggacccgatc gaggcgctgc ggcagcagta gcccttcgac agacccggcg cgcgtcctgg
     2401 ccattccgcc cgaggcgctc cggcggcgat ggacgaggcg cattggccta tcctgtcgcc
     2461 ctgcttccgg gagaccaaca tgcgcgccat cgccctcatc ctgctgacgc tcgccgccat
     2521 gaccgccaac gccaccgacc aaccgaagac cgcgctcgtc atccatggcg gcgcgggcgt
     2581 gatcgaacgc agccacctga gtgccgagga cgagaaggcg atccgtgccg acctcggccg
     2641 cgcgctcgac gccggcaacg ccatcctcgc caagggcggg tccgcgctgg acgcggtgca
     2701 ggcggcgatc catgtcatgg aggattcgcc gcgcttcaac gccggcaagg gcgcggtgtt
     2761 caacgcccgg ggcgggcacg agctcgactc ggcgatcatg gaaggccaca cgcgccgcgc
     2821 cggctcggtt gccggcgtga ccacggtgcg ccacccggtg gacctggccc gtgccgtgat
     2881 ggagcactca ccgcacgtga tgctcgccgg cgccggcgcc gaagccttcg ccgacacccg
     2941 ggccgagatc gaacgggtgc ccaacagctg gttcgacacc gacctgcgcc gcaggcagct
     3001 cgagcaggcc caggcggacg agaagcagca ggccgcgctc ggcctgccgc cgaagaaggg
     3061 cacctatttc ggcaccgtcg gcgcggttgc cctcgacgcg cagggccaca tcgccgcggc
     3121 gacctcgacc ggcggcatga ccaacaagaa gtggggccgc gtcggcgact cgccgatcat
     3181 cggcgcgggc acttgggccg acgagcgttg cggcgtgtcc ggcaccggct ggggcgagtt
     3241 ctacatccgc aacgcggtgg cgcacgacat ctgcgcgcgc gtggcctacc gcggcgattc
     3301 gctgcaggcc gcggcggagg aggtcgtcga ccggatcgtg cccgccgccg gcggcgacgg
     3361 cggcgcgatc gcgctcgaca aggacggcaa catcgcgatg ccgttcaaca cctcgggcat
     3421 gtaccgcggc tgggtgaagc cagacggcag ccgcggcgtg gcgatcttcc gcgacgagca
     3481 ttaggattgg ttccccgcaa cgaaaaaggc ccggttgccc gggccttttt cttttcgtcg
     3541 cggaggttca gcgttcctcg gccacgacca gccgcgggtc gatcgcctgg ttgttgtcga
     3601 gatggctggc cgagagcttc ttc
//
LOCUS       DATIQC010000361         3141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_483215, whole genome shotgun sequence.
ACCESSION   DATIQC010000361 DATIQC010000000
VERSION     DATIQC010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_483215"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..918)
                     /locus_tag="VLM17_07675"
     CDS             complement(<1..918)
                     /locus_tag="VLM17_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005916938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR65462.1"
                     /translation="MTLKTTKLRDAITFALAVGATAAAGTGVAFAQDAQPADQAQSDQ
                     QAKTLERIEVTGSRIKRTETETSQPVFNLTRADIQAQGLTSVGDVIQNLAANGSALNS
                     TFNNGGDGETRVSLRNLGSNRTLVLVNGHRWVGGTGLGGAVDLNTIPTAAVERIEVLK
                     AGASALYGSDAIAGVVNVILRKDYSGAEANAYIGNFDKGDGTRQSYDLTIGQTGDRFS
                     AMFGVGYVKEDPVMAGDRDISATPIDGTGVAFGSSTIPGGRYALCNGTFSAGVCSGTE
                     VRPDGTPGQFTYDGSNSGLAWRARTGADIY"
     gene            complement(1211..2026)
                     /locus_tag="VLM17_07680"
     CDS             complement(1211..2026)
                     /locus_tag="VLM17_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008572079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65463.1"
                     /translation="MLALGVATGAAAQSAHRDQTVLPVWNNASGKIEALLVLEPVEGA
                     QAGARWRFGNNTIDATLGLDAGDSLALLCDRKNGLAGTLGNLSNNCLLAALGNGLDAN
                     GSRRTSVGTAFGHGNTRLGVSLGNSRDTLPAWLTPGRPGARVEGNDITLVARKDLGSQ
                     GYVSLAGTLAKAKLVAPEDMPALADRWNSRSLTLGGGMGAFGASIVGHVVDTPGQPKW
                     EAFGLGLTWRTPWSGQLTVGADNVVTRGKNPFSPNASGEEDGTVPYVRYEQDL"
     gene            complement(2179..3081)
                     /locus_tag="VLM17_07685"
     CDS             complement(2179..3081)
                     /locus_tag="VLM17_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HSR65464.1"
                     /translation="MTQLPSDDRDALTRFLLQEAGVRGVRVHLEDTWRQIRARAEYPA
                     AIEELLGEACAAAALFTGHAKIDGRLSVQLRGDGPLRTLFAECTAAGTLRAIAQYDGD
                     MPVSRDLRELGENALLVITIENPGVGEREPVRYQGIVALESDALAGAFEGYFRQSEQL
                     PTRLLLAVDHQRVAGLMLQKLPGDAGDADGWTRASALFDTLEPRELLDWPAETLLRRL
                     FPEDTIEVLGSRPLGFACSCSRERVASMLQTLGEEEALAAAADGMAEIRCEFCGQQYR
                     FDAGQIGGLFEPRGVELEPPARLQ"
BASE COUNT          430 a         1025 c         1188 g          498 t
ORIGIN      
        1 gtagatgtcg gcgccggtgc gcgcgcgcca ggcgaggccg ctgttggaac cgtcgtaggt
       61 gaactggccg ggggtgccgt ccggacggac ttccgtgccg gagcagacgc cggcggagaa
      121 ggtgccgttg cagagcgcgt agcggccgcc cggaatggtc gagctgccga acgcaacgcc
      181 ggtgccgtcg atcggggtcg ccgagatgtc gcggtcgccg gccatgaccg gatcttcctt
      241 gacgtagccg acgccgaaca tggcgctgaa gcggtcgccg gtctggccga tcgtcaggtc
      301 ataggactgg cgggtgccgt cgcccttgtc gaagttgccg atgtaggcat tggcttcggc
      361 gccgctgtag tccttgcgca ggatgacgtt gaccacgccc gcgatcgcgt ccgaaccata
      421 gagcgccgag gcgccggcct tcagcacttc gatgcgctcg acggcagccg tcgggatggt
      481 gttgaggtcg accgcgccgc cgaggccggt accaccgacc caacgatggc cgttcaccag
      541 caccagggtg cggttcgagc cgaggttgcg caggctgacg cgggtttcgc cgtcaccgcc
      601 gttgttgaag gtgctgttga gggcggagcc gttggcagca aggttctgga tcacgtcgcc
      661 gacggacgtc aggccctggg cctggatgtc cgcgcgggtc aggttgaaca ccggctgcga
      721 ggtctcggtc tccgtgcgct tgatgcgcga accggtgact tcgatgcgct ccagggtctt
      781 cgcctgctgg tcgctctggg cctggtcggc aggctgggca tcctgggcga atgcgacgcc
      841 cgtgccggcc gcagccgtgg cgcccactgc gagcgcgaag gtaatcgcgt cgcggagctt
      901 ggtggtcttc aaggtcatct ctctctccaa gtcagtcttg ggtatttccc atgggaacct
      961 ccccggcgga gtcgaaaaga cgcccgtgcc ggcaaggccg gggccgatag tagcccccct
     1021 cggagagaaa ttaaagtgtc gttaaagggc ggaaattccc gcgggaactt ggcggtttgc
     1081 gccgcccgcc ggcggacggg tgcgggcccc cggcaacggg cggccgaccg gagccgggca
     1141 gggtggaaac ggggggcggt cgctgccggg gcagccggcg ggcgggactt cgcgggccag
     1201 cgcccgggac tcagaggtcc tgttcgtacc ggacgtacgg aaccgtgccg tcctcttcgc
     1261 cggaggcgtt cggcgagaac gggttcttgc cgcgggtgac gacattgtcg gcgcccacgg
     1321 tgagctggcc gctccagggg gtgcgccagg tgaggccgag gccgaaggct tcccacttcg
     1381 gctgcccggg ggtgtcgacc acgtggccga cgatgctggc gccgaaggcg cccatgccgc
     1441 cgccgagggt gaggctgcgg ctgttccagc gatcggccag cgcgggcatg tcttccggcg
     1501 cgaccagctt ggccttggcg agggtgccgg cgagcgatac gtagccctgg ctgccgaggt
     1561 ccttgcgcgc caccagggtg atgtcgttgc cttcgacccg ggcgccgggc cggccggggg
     1621 tcagccaggc gggcagggtg tcgcggctgt tgcccagcga cacgccaagg cgggtgttgc
     1681 cgtggccgaa ggcggtgccc acgctcgtgc ggcggctgcc gttggcatcc aggccattgc
     1741 cgagcgcggc gagcaggcag ttgttggaca ggttgccgag cgtgccggcc aggccgttct
     1801 tgcggtcgca cagcagggcg agcgaatcgc cggcgtcgag gccgagggtg gcgtcgatgg
     1861 tgttgttgcc gaagcgccag cgcgcgccgg cctgggcgcc ttccaccggc tcgagcacca
     1921 gcagggcctc gatcttgccg cttgcgttgt tccacaccgg cagcacggtc tggtcgcggt
     1981 gcgccgactg tgcagccgcg cccgtggcca cgccgagggc gagcacgagg gcgatgggca
     2041 gctgcaggag gcgggagaac atggtgcgcg tctgacccct tggtggcggt cgagttcctc
     2101 gggggatgac acgactttaa ccgatttatg tttccttaac aatccccgcc gctggaccgg
     2161 cgtcccgttt tccgcttcct attgcaggcg cgcggggggc tcgagctcca ccccccgcgg
     2221 ctcgaaaagg ccgccgatct gccccgcatc gaaccggtat tgctggccgc agaattcgca
     2281 acggatctcc gccatgccgt cggccgcggc cgccagcgcc tcctcctcgc cgagggtctg
     2341 cagcatggag gcgacccgct cgcgcgagca ggaacaggcg aagcccagcg gccggctgcc
     2401 gagcacttcg atggtgtcct cggggaacag cctgcgcagc agggtctccg ccggccagtc
     2461 cagcagttcg cgcggttcga gggtgtcgaa cagcgccgag gcgcgggtcc agccatcggc
     2521 gtcgccggcg tccccgggca gcttctgcag catcaggccg gccacgcgct ggtggtcgac
     2581 ggcgagcagc agccgggtcg gcaactgctc ggactggcgg aaatagcctt cgaaggcccc
     2641 ggccagcgcg tcggactcga gcgcgacgat gccctggtag cgcaccggct cgcgctcgcc
     2701 cacgccgggg ttctcgatcg tgatcacgag cagcgcgttc tcgccgagtt cgcgcaggtc
     2761 gcgcgagacc ggcatgtccc cgtcgtactg ggcgatcgcg cgcagggtgc cggcggcggt
     2821 gcactcggcg aacagcgtgc gcagcgggcc gtcgccgcgc agctgcaccg acaggcggcc
     2881 gtcgatcttc gcgtgcccgg tgaacagcgc ggccgcggcg caggcctcgc ccagcagttc
     2941 ctcgatcgcc gccgggtatt cggcgcgcgc gcggatctgc cgccaggtgt cctccaggtg
     3001 cacgcgcacg ccgcgaacgc cggcctcctg caacaggaag cgggtgaggg cgtcgcggtc
     3061 gtcggaggga agttgggtca tgggcggtgc tcggcgcgat aatgcgcgct gtcttcgggg
     3121 gatggcgtca atgggtgggg a
//
LOCUS       DATIQC010000362         3168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_589342, whole genome shotgun sequence.
ACCESSION   DATIQC010000362 DATIQC010000000
VERSION     DATIQC010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3168
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589342"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..361)
                     /locus_tag="VLM17_07690"
     CDS             complement(<1..361)
                     /locus_tag="VLM17_07690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhN family protein"
                     /protein_id="HSR65465.1"
                     /translation="MKPRHPGLRLAVRAFSLLFLAVVAVLLVHAARAVDWTQVRAAIA
                     GYSPRRLALAGVLTAASYALYCGYDVAARRYAEHDLRRRHILPIVFVSYALSMNIGAV
                     LGGAGFRLRLYARSGLSL"
     gene            complement(375..1577)
                     /gene="clsB"
                     /locus_tag="VLM17_07695"
     CDS             complement(375..1577)
                     /gene="clsB"
                     /locus_tag="VLM17_07695"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008808 - cardiolipin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0032049 - cardiolipin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HSR65466.1"
                     /translation="MQAPWRDGNRVRLLENGEAFFPAALAAIAAAEREVLLETFILFE
                     DKVGLALHGALVAAARRGVRVHLMVDGYGSPAFSSRFLSALLDAGIALRVFDPHPGVL
                     GMRVNLFRRMHRKLLVVDGVRAFAGGINFSAEHLADFGREAKQDYAIEVEGPVVADIL
                     SFVRAALSSDGTGEQWRHPPAARRDAAGVATAMFVARDNRNRADAIEDEYRRAIAAAR
                     SEILIANAYFFPGASFLRALRRASARGVRVALVLQGEPDTRLARTAARMLYRALLDGG
                     VRVFEYCRRPFHGKVAVIDGEWATVGSSNLDPLSLSLNLEANVFVRDAAFAADLRERL
                     RVLMATECRAIDAAAVPSRTLGDAVLRALAYHCLRRFPDWAGLLPAHTPRLARVRDAA
                     DGHFRRAA"
     gene            complement(1579..2319)
                     /locus_tag="VLM17_07700"
     CDS             complement(1579..2319)
                     /locus_tag="VLM17_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HSR65467.1"
                     /translation="MPVFNILTVNTHMGFGPFNRRFVLHELREAIRSLSAEVVFLQEV
                     AGEHTEHAANHAEWPDDPHYEFLADTLWPQYAYGRNAAFPFGHQGNALLSKFPILRYD
                     NRDVSVPGHEERGLLHCLLALPDGMEVHAVCTHLGLLESHRRKQLGLLCELVNDGIPR
                     DAPLVVAGDFNDWRGKGHQLLARCGLQEAFVAAHGRFARSFPARLPLLPLDRIYLRNA
                     RAPEPRVLSTRPWSHLSDHAPLAAAIEV"
     gene            complement(2395..>3168)
                     /locus_tag="VLM17_07705"
     CDS             complement(2395..>3168)
                     /locus_tag="VLM17_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HSR65468.1"
                     /translation="EAYLDVTETRTRLPTATATAESIRAAIREETRLTASAGVAPNKF
                     LAKIASDWRKPDGLFVVRPHQVERFLAPLPVGRLPGVGRVMEARLAELGVATVAQLRT
                     LPVALLEQRFGRWGRRLHELSFGIDEHPVQPERPTMQISAEDTFARDLRLDELEPHIR
                     RLAEKAWAGYERELADPHGRIARTVVLKLKTHDFRVLTRSLTPGERPASLQDAADIAC
                     ALRARVELPSRTRYRLVGVGLAGFVARDSVAAQAELFEG"
BASE COUNT          461 a         1118 c         1176 g          413 t
ORIGIN      
        1 ccagcgacag tccggaacgg gcgtacaggc gcaggcggaa cccggcgccg ccgagcaccg
       61 cgccgatgtt catgctcagc gcgtagctga cgaagacgat cggcaggatg tggcggcggc
      121 gcaggtcgtg ttcggcgtag cggcgggcgg cgacgtcgta gccgcagtag agcgcgtagc
      181 tcgcggccgt cagcacgccc gcgagcgcga gccggcgcgg actgtagccg gcgatcgcgg
      241 cgcgcacctg cgtccagtcc accgcgcgcg cggcgtgcac gagcagcacg gcgaccaccg
      301 cgaggaacag cagcgaaaac gccctcaccg cgaggcgcag cccgggatgg cgcggcttca
      361 tgcggccttc cggttcatgc ggccctccgg aaatgcccgt cggccgcgtc gcgcacgcgc
      421 gccagccgcg gcgtgtgcgc cggcagcagt ccggcccagt cggggaagcg gcgcaggcag
      481 tggtaggcca gcgcccgcag caccgcatcg ccgagggtgc gcgagggcac cgcggcggcg
      541 tcgatggcac gacattccgt ggccatcagt acccgcagcc gttcgcgcag gtcggcggcg
      601 aacgccgcgt cgcgcacgaa gacgttggcc tcgaggttga gcgacaggct cagcggatcg
      661 aggttgctcg agccgacggt cgcccactcc ccgtcgatca ccgcgacctt gccgtggaac
      721 ggccggcggc agtactcgaa cacccgcacg ccgccgtcga gcagcgcgcg gtagagcatc
      781 cgcgccgcgg tgcgcgccag gcgcgtgtcg ggctcgccct gcagcaccag cgccacgcgc
      841 acgccccgcg ccgacgcccg ccgcagcgcg cgcaggaagc tggcgcccgg gaagaagtag
      901 gcgttggcga tcaggatctc gctgcgcgcg gcggcgatcg cgcgacggta ttcgtcctcg
      961 atggcgtcag cgcggttgcg gttgtcgcgg gcgacgaaca tcgcggtcgc aacaccggcc
     1021 gcatcgcgcc gcgccgccgg gggatgccgc cattgctcgc cggtgccgtc ggaggacagc
     1081 gccgcgcgca cgaagctgag gatgtcggcg accaccggtc cctcgacctc gatcgcatag
     1141 tcctgcttgg cctcgcggcc gaagtccgcg aggtgctcgg cggaaaagtt gatcccgccg
     1201 gcgaaggcgc gcacgccgtc gaccaccagc agcttgcggt gcatgcgccg gaacaggttg
     1261 acgcgcatgc cgagcacgcc gggatgcgga tcgaatacgc gcagcgcgat gcctgcatcc
     1321 agcagcgcgg acaggaatcg cgacgagaat gcgggcgacc cgtagccgtc caccatcagg
     1381 tgcacgcgca cgccgcggcg cgccgccgcc accagcgccc catgcagggc gaggccgacc
     1441 ttgtcctcga acaggatgaa ggtttccagc agcacctcgc gctcggccgc cgcgatcgcc
     1501 gccagggcgg cgggaaagaa cgcctcgccg ttctccagca gtcgcacccg gttgccgtcg
     1561 cgccagggtg cctgcacgtc agacctcgat cgccgcggcc agcggcgcgt ggtcggaaag
     1621 gtgcgaccac ggccgggtcg acagcacccg tggttccggc gcgcgtgcgt tgcgcaggta
     1681 gatgcggtcc agcggcagca gcggcaggcg cgccgggaag ctgcgcgcga agcgcccgtg
     1741 cgcggcaacg aaggcttcct gcagcccgca gcgcgcgagc agctggtggc ccttgccgcg
     1801 ccagtcgttg aagtcgccgg cgaccaccag cggcgcgtcg cgcgggatcc cgtcgttcac
     1861 cagttcgcac agtaacccga gctgtttgcg ccggtggctt tccagcagtc cgaggtgcgt
     1921 gcagaccgcg tgcacttcca tgccatcggg cagggcgagc aggcagtgca gcaggccgcg
     1981 ctcctcgtgc cccggcaccg acacgtcgcg gttgtcgtag cgcaggatcg ggaatttcga
     2041 cagcagcgcg ttgccctggt ggccgaacgg gaacgccgcg ttgcgcccgt aggcgtattg
     2101 cggccacagc gtgtcggcga ggaattcgta gtgcggatcg tcgggccact cggcgtggtt
     2161 ggccgcatgc tcggtgtgct cgccggccac ttcctgcagg aacaccacct ccgccgacag
     2221 gctgcggatc gcctcgcgca gttcgtgcag cacgaagcgg cggttgaacg gaccgaagcc
     2281 catgtgggtg ttgaccgtga ggatgttgaa gacgggcatg cgtccggcgt cggcgggcgg
     2341 atgccgccga ttctgcccgc gcccggtggc ccgccgcgtg agggcagggc cgcttcagcc
     2401 ttcgaacagc tccgcctgcg cggccacgct gtcgcgcgcg acgaagcccg cgaggcccac
     2461 gccgaccagg cgatagcgcg tccgcgaggg gagctcgacg cgcgcgcgca gggcgcaggc
     2521 gatgtcggcg gcgtcctgca gcgacgccgg ccgctcgccg ggcgtcaggc tgcgggtgag
     2581 gacgcggaag tcgtgggtct tgagcttgag caccacggtg cgggcgatgc ggccgtgcgg
     2641 atcggcgagt tcgcgttcgt agcccgccca ggccttctcc gcgagccggc ggatgtgcgg
     2701 ctcgagttcg tccagccgca ggtcccgggc gaaggtgtcc tcggcggaaa tctgcatcgt
     2761 cggccgctcc ggctgcaccg gatgctcgtc gatgccgaac gagagttcgt gcaggcgccg
     2821 gccccagcgg ccgaagcgct gttcgagcag cgccaccggc agcgtgcgca gctgcgcgac
     2881 ggtcgcgacg cccagttcgg cgagcctggc ttccatcacc ctgcccacgc ccggcaggcg
     2941 ccccaccggc agcggcgcga ggaagcgctc gacctggtgg ggacgcacca cgaacagccc
     3001 gtcgggcttg cgccagtcgc tggcgatctt ggcgaggaac ttgttcggcg cgacgcccgc
     3061 ggacgcggtg agccgggttt cctcccggat cgccgcgcgg atcgactcgg cggtggcggt
     3121 cgcggtcggc aaccgcgtcc tggtttcggt gacgtcgagg taggcctc
//
LOCUS       DATIQC010000363         6079 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_164991, whole genome shotgun sequence.
ACCESSION   DATIQC010000363 DATIQC010000000
VERSION     DATIQC010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6079
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164991"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..1122)
                     /locus_tag="VLM17_07710"
     CDS             complement(193..1122)
                     /locus_tag="VLM17_07710"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006448471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HSR65469.1"
                     /translation="MATTLLAADLPGLTLRHRGKVRDVFDLPAARLPAAAHGHGDCLL
                     IVATDRLSAFDVVLPDPIPGKGEMLCQISNFWFEKTAHIVPNHLTGIDVASVLPGGVD
                     PALYAKRAVVTKKLKPVPVEAIARGYLIGSGWKDYQRTGRVSGIALPDGLRQAEQLPQ
                     PIFTPSTKAAVGDHDENIDFDTVVRTIGVELAEQVRDATLRLYEFAREYAAQRGIILA
                     DTKFEFGTDADGRLYVMDEMLTPDSSRYWPADQYEVGTSPPSYDKQFVRDYLETLAWD
                     KTPPGPRLPAEVIERTRAKYAEALQRLAGIGVD"
     gene            1193..1531
                     /locus_tag="VLM17_07715"
     CDS             1193..1531
                     /locus_tag="VLM17_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HSR65470.1"
                     /translation="MTTPWYGKLLGALAGAALMRSNPLFGLIVGLLIGHALDMGWFRS
                     RRDDPYRVLGLTDEASDAEIERAWRRLVSQYHPDRMAGAANELRHQAEQRMREINRAY
                     DQIQALRRRR"
     gene            1659..2333
                     /gene="rpe"
                     /locus_tag="VLM17_07720"
     CDS             1659..2333
                     /gene="rpe"
                     /locus_tag="VLM17_07720"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010379428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HSR65471.1"
                     /translation="MQPAVIAPSILSADFARLGEEVDTVLAAGAEWVHFDVMDNHYVP
                     NLTIGPMVCQALRKHGVTAPIDVHLMVEPVDALVPDFAKAGASLMSFHPEASRHVHRT
                     IQLIRGAGCQAGLVLNPATPVDVLDWVLEDLDLVLVMSVNPGFGGQSFIPAALDKLRA
                     VRAMIDRCGKPIRLEIDGGVKPDNIGEIAAAGADTFVAGSAIFGHADYARVIGEMHAA
                     IAAARR"
     gene            2605..4122
                     /gene="trpE"
                     /locus_tag="VLM17_07725"
     CDS             2605..4122
                     /gene="trpE"
                     /locus_tag="VLM17_07725"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HSR65472.1"
                     /translation="MSPAPLTHEQFQQYAADGHTLIPVVREVLSDLDTPLSVYLKLAD
                     GPHTYLFESVEGGERFGRYSIIGLPARRVYAFAGNTLYVTENGELVDARTVDDPFAEV
                     ERLRSEHRVPKIAGLPGFTGGLVGWFGFECVQYLEPRLRTPQADGTPKPDELGTPDIL
                     LMLSEDVAVFDNLKGKLYLIVHADPREPQAFARANRRLDALAHRLRHGGAGYPETLVP
                     AALDESHFVSGFTREGFIAAVEKSKDYIRAGDIFQVVLSQRLSVPFQARPVDVYRALR
                     ALNPSPYMYFLDVGGTQVVGSSPEILVRLQGSGTDESTVTVRPIAGTRPRGATPEEDA
                     ALEAELLADPKERAEHLMLIDLGRNDVGRVSEPGTVEVGEQFVIERYSHVMHIVSEVT
                     GRLRAGLTYADVLRATFPAGTVSGAPKIRALEVIRELEPIRRNVYSGAVGYIGWHGDA
                     DTAIAIRTAVIQDGRLHVQAGAGIVYDSDPAKEWDETMNKGRALFRAVAEAARGL"
     gene            4261..4515
                     /locus_tag="VLM17_07730"
     CDS             4261..4515
                     /locus_tag="VLM17_07730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65473.1"
                     /translation="MKTTQLLLALGLALGTTAAFAQATPATPATPATPAAAPAASATA
                     ATKPMRKHHRRHRHHHHKAAMKKADSAPKTDAASDASKTS"
     gene            4593..5267
                     /locus_tag="VLM17_07735"
     CDS             4593..5267
                     /locus_tag="VLM17_07735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014402254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HSR65474.1"
                     /translation="MRILLVEDDAHTAGFISKGLREDGHAVDTADNGRDGLFLATTEP
                     YDAVVLDRMLPALDGLTVLQTLRGAGNHTPVLLLTALGDVDHRVEGLRAGADDYLVKP
                     FAYAELAARLDSIARRGQAGGGQPTRLRVADLELDLLSREANRGGKRIELLPREFRLL
                     EYLMRQAERVVTRTMLLEAVWDYHFDPQTNVIDVHISRLRQKIDAGFPRPLLHTVRGA
                     GYRLGN"
     gene            5267..>6079
                     /locus_tag="VLM17_07740"
     CDS             5267..>6079
                     /locus_tag="VLM17_07740"
                     /inference="COORDINATES: protein motif:HMM:NF012876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSR65475.1"
                     /translation="MRLPRATSTRLALAVAAAFLVACVLLGAAVQYTVSRLLLADTRA
                     VIRADASGLVEIYRDDGAAALLEEVRDRVESPDDPDAVYALFARDGRLRAGSIAHLPP
                     QVRGTRWAEFDERGSGNQPQRVVANLQRLRDGDLLVTGLRTRSQDRFLALMLRTALAA
                     LVAAATLAGVVGWAASRWVSQRLRALDDTAARVGNGELALRAPLDGSDDAFDRLARRF
                     NGMLDRIGELVDGIRHATDHIAHDLRTPLTRLRNRLEELREEGGTRPATLEAA"
BASE COUNT          868 a         2239 c         2129 g          843 t
ORIGIN      
        1 aggagtcatg gcggcaacgg cgggacggcg gcgctagctt gcgccaccgg tgtcgcgtgg
       61 acaaccggcg cgatccctcc tgccgccggg cgccggccga cgggcggctc gcgtttcgac
      121 gagtacggtc gttcgtggcc gaggtcgtcc caagccgcgg tcgttcgaag ccgcgctcgc
      181 tcgaggccgc ggtcagtcga cgccgatgcc ggccagccgc tgcagcgctt ccgcgtactt
      241 ggcccgcgtg cgttcgatga cctcggccgg caggcgcggg cccggcggcg tcttgtccca
      301 cgccagcgtc tcgagataat cgcgcacgaa ctgcttgtcg tagctcggcg ggctggtgcc
      361 gacctcgtac tggtcggcgg gccagtagcg cgaggagtcc ggcgtgagca tctcgtccat
      421 cacgtacagg cggccgtccg catcggtgcc gaattcgaac ttggtgtcgg cgaggatgat
      481 gccgcgctgc gccgcgtact cgcgcgcgaa ttcatacagg cgcagggtcg cgtcgcgcac
      541 ctgctcggcg agttcgacgc cgatcgtgcg caccacggtg tcgaagtcga tgttctcgtc
      601 gtggtcgccg accgcggcct tggtcgaggg ggtgaagatc ggctgcggca gctgctcggc
      661 ctggcgcagg ccgtcgggca gggcgatgcc gctgacgcgg ccggtgcgct ggtaatcctt
      721 ccagccgctg ccgatcaggt agccgcgcgc gatcgcttcc accggcaccg gcttgagctt
      781 cttcgtcacc accgcgcgct tcgcgtacag ggcgggatcg acgccgccgg gcagcacgct
      841 cgcgacgtcg atgccggtga ggtggttggg cacgatgtgc gccgtcttct cgaaccagaa
      901 attgctgatc tggcagagca tctcgccctt gcccgggatc gggtcgggca gcaccacgtc
      961 gaacgcgctc aggcggtcgg tggcgacgat cagcaggcag tcgccgtggc cgtgcgcggc
     1021 ggccggcagg cgcgcggcgg gcaggtcgaa cacgtcgcgc accttgccgc ggtggcgcag
     1081 ggtcaggccg ggcaggtcgg cggcgagcag ggtggtggcc atgcgatcgg gggcgaaagc
     1141 gggccggcta gtgtagcggc gtcgcggccg ggccggcctg taaactggcg cgatgacgac
     1201 gccgtggtac ggaaaactgc tgggcgcgct ggccggcgcc gcgctgatgc ggtccaaccc
     1261 gctgttcggc ctgatcgtcg gcctgctgat cgggcatgcc ctggacatgg gctggttccg
     1321 cagccggcgc gacgacccct accgggtgct cggcctgacc gacgaggcca gcgacgccga
     1381 aatcgagcgc gcgtggcggc ggctggtgtc gcagtaccac cccgaccgca tggccggcgc
     1441 cgccaacgaa ctgcgccacc aggccgagca gcgcatgcgc gagatcaacc gcgcgtacga
     1501 ccagatccag gcgctgcgca ggcggcgctg aggcgagtcg ttctgcctcc cccgcttgcg
     1561 ggggagggcc ggggtggggt gggtcgttcg cccgcttccc ccatcccaac cttcccccgc
     1621 gagcggggga aggagcgaca cacaacaccg gagcccgcat gcaacccgcc gtcatcgccc
     1681 cttccatcct ctccgccgac ttcgcccgcc tcggcgagga ggtcgacacg gtgctcgccg
     1741 ccggcgcgga gtgggtgcac ttcgacgtga tggacaacca ctacgtgccc aacctgacca
     1801 tcggtccgat ggtctgccag gcgctgcgca agcacggggt gaccgcgccg atcgacgtgc
     1861 acctgatggt cgagccggtc gatgcgctgg tgccggattt cgccaaggcc ggcgccagcc
     1921 tgatgagctt ccacccggag gccagccggc acgtgcaccg cacgatccag ctgatccgcg
     1981 gcgcgggctg ccaggccggg ctggtcctca atccggcgac gccggtcgac gtgctcgact
     2041 gggtgctcga ggacctcgac ctggtgctgg tgatgtcggt caaccccggt ttcggcggcc
     2101 agtccttcat cccggcggcg ctggacaagc tgcgcgccgt gcgcgcgatg atcgaccgct
     2161 gcggcaagcc gatccggctg gagatcgacg gcggggtcaa gccggacaac atcggtgaaa
     2221 tcgcggcggc gggcgccgac accttcgtgg ccggcagcgc catcttcggc cacgccgact
     2281 acgcccgggt catcggcgag atgcatgccg cgatcgccgc ggcccgccgc tgagcaaaaa
     2341 aaaagcggcc ggtgccaagg gggaggcatc gaccgccgga gagagggtgg aggcaatccc
     2401 gcctccgtct ttcgtccttg cgatggattg ccattctccc gattcaggat gatgacgacg
     2461 tgacggccgg cgggccgtgc ggctacagtg ccggcatgtc ctcccgggtt tccctgcggt
     2521 tcctcctggc cggccggcct tggcgatggc ggcccgtggc tgccgtcgcc tccgcccctc
     2581 cgccctcgca ggacgccccg cccgatgtcg cccgccccgc tcacgcacga gcagttccag
     2641 cagtacgccg ctgacggcca taccctgatc ccggtggtcc gcgaggtcct gtccgacctc
     2701 gacaccccgc tctcggtcta cctcaagctc gccgacggcc cgcacaccta cctgttcgag
     2761 tcggtcgagg gcggcgagcg cttcggccgc tactcgatca tcggcctgcc ggcgcggcgc
     2821 gtgtatgcct tcgcgggcaa cacgctgtac gtcaccgaaa acggcgagct cgtcgacgca
     2881 cgcacggtcg acgatccgtt tgccgaagtc gaacgcctgc gcagcgagca ccgcgtgccg
     2941 aagatcgccg ggctgcccgg cttcaccggc gggctggtcg gctggttcgg gttcgaatgc
     3001 gtgcagtacc tcgagccgcg cctgcgcacg ccgcaggccg acggcacgcc caagcccgac
     3061 gaactaggca cgcccgacat cctgctgatg ctcagcgagg acgtcgcggt gttcgacaac
     3121 ctcaagggaa agctctacct gatcgtgcac gcggatccgc gcgagccgca ggccttcgcg
     3181 cgcgccaacc gccgcctcga tgcgctcgcg caccgtctgc gccacggcgg cgccgggtat
     3241 ccggagacgc tggtgccggc ggcgctcgac gagagccact tcgtctccgg cttcacccgc
     3301 gaaggcttca tcgccgcggt ggagaagtcg aaggactaca tccgcgccgg cgacatcttc
     3361 caggtggtgc tctcgcaacg gctgtcggtg ccgttccagg cacgaccggt cgacgtgtac
     3421 cgggcgctgc gcgcgctgaa tccgtcgccc tacatgtact tcctcgacgt cggcggcacc
     3481 caggtggtcg gctcgtcgcc ggagatcctc gtgcgcctgc agggcagcgg aaccgacgag
     3541 agcaccgtca ccgtgcgccc gatcgccggc acgcgcccgc gcggcgcgac gccggaggag
     3601 gacgccgcgc tcgaggccga gctgctcgcc gacccgaagg aacgcgccga gcacctgatg
     3661 ctgatcgacc tcgggcgcaa cgacgtcggc cgcgtgagcg agccgggcac ggtggaggtg
     3721 ggcgagcagt tcgtgatcga acgctacagc cacgtcatgc acatcgtcag cgaggtgacg
     3781 ggtcgcctgc gtgccggcct tacctacgcc gacgtgctgc gcgcgacctt cccggcaggc
     3841 accgtcagcg gcgcgccgaa gatccgcgcg ctggaagtga tccgcgaact cgagccgatc
     3901 cgtcgcaacg tgtactcggg cgcggtcggc tacatcggct ggcatggcga cgccgacacc
     3961 gcgatcgcga tccgcaccgc cgtcatccag gacggcaggc tgcacgtgca ggccggcgcg
     4021 gggatcgtgt acgactccga tcccgcgaag gaatgggacg agacgatgaa caagggccgt
     4081 gcgctgttcc gcgcggtggc cgaggccgcg cgcgggctgt agcggcgacg gcgttcagcc
     4141 gggtgcgcgg cggacgacta aattttctgt cattcgccgg caacgcccgc ggcaatgccg
     4201 cgagggcagg gtggtcgggc aggcacacgg cctgcccact cttcctcgag aggcattcca
     4261 atgaagacca cccagctcct gctcgcgctc ggcctcgccc tcggcaccac cgccgcgttc
     4321 gcacaggcga ccccggcgac gcccgccacg ccggcgacgc ccgccgccgc gccggccgcc
     4381 agcgccaccg cggcgaccaa gccgatgcgc aagcaccatc ggcgccatcg ccaccaccac
     4441 cacaaggcgg cgatgaagaa ggcggacagc gcgcccaaga ccgacgccgc cagcgacgcc
     4501 agcaagacca gctgagcgcg cgcatcctcg tcggatcggc atcccgccgg cacgtgccgg
     4561 cgggtatgct ggcggaggtt cccggaggcg tgatgcgcat cctgctggtc gaagacgacg
     4621 cccacactgc cggcttcatc agcaagggcc tgcgcgagga cggccatgcc gtcgacaccg
     4681 cggacaacgg ccgcgacggc ctgttcctcg ccaccaccga accctacgac gcggtcgtgc
     4741 tcgaccgcat gctgcccgcg ctggacggcc tcaccgtcct gcagaccctg cgcggcgccg
     4801 gcaaccacac gcccgtgctc ctgctcaccg cgctcggcga cgtcgaccac cgcgtcgaag
     4861 gcctgcgggc cggcgccgac gactacctcg tcaagccgtt cgcctacgcc gaactcgccg
     4921 cgcgcctgga cagcatcgcc cgccgcggcc aggccggcgg cggccagccg acccggctgc
     4981 gcgtcgccga cctcgaactc gacctgctct cgcgcgaggc caaccgcggc ggcaagcgca
     5041 tcgagctgct gccgcgcgag ttccgcctgc tcgaatacct gatgcgccag gccgagcgcg
     5101 tggtcacgcg cacgatgctg ctcgaggcgg tgtgggacta ccacttcgac ccgcagacca
     5161 acgtcatcga cgtgcacatc agccgcctgc ggcagaagat cgacgccggc ttccccaggc
     5221 cgctgctgca caccgtgcgc ggcgcgggct accggctggg caactgatgc gcctgccgcg
     5281 cgccaccagc acgcgcctgg cgctggcggt ggcggctgcc ttcctcgtcg cctgcgtgct
     5341 gctcggcgcg gcggtgcagt acacggtctc gcgcctgctg ctcgccgaca cccgcgcggt
     5401 gatccgcgcc gatgcctcgg ggctggtgga gatctaccgc gacgacggcg ccgccgcgct
     5461 gctcgaggaa gtccgcgacc gcgtcgagtc ccccgacgac ccggacgcgg tgtatgcgct
     5521 gttcgcgcgc gacggcaggc tgcgcgccgg cagcatcgcc cacctgccgc cgcaggtgcg
     5581 gggcacccgc tgggccgagt tcgacgaacg cggctcgggc aaccagccgc agcgcgtggt
     5641 cgccaacctg cagcggctgc gcgacggcga cctcctggtg accggcctgc gcacgcgctc
     5701 gcaggaccgc ttcctcgccc tgatgctgcg caccgcgctg gccgcgctgg tggccgcggc
     5761 cacgctcgcc ggggtggtcg gctgggccgc ctcgcgctgg gtgtcgcagc gcctgcgcgc
     5821 gctcgacgac accgccgcgc gggtgggcaa cggcgagctc gcgctgcgcg cgccgctgga
     5881 cggcagcgac gacgccttcg accgcctcgc gcgccgcttc aacggcatgc tcgaccgcat
     5941 cggcgaactg gtcgacggca tccgccacgc caccgaccac atcgcccacg acctgcgcac
     6001 gccgctgacc cgcctgcgca accggctgga ggaactgcgc gaggagggcg ggacccgccc
     6061 ggccacgctg gaggcggcg
//
LOCUS       DATIQC010000364         4218 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_235608, whole genome shotgun sequence.
ACCESSION   DATIQC010000364 DATIQC010000000
VERSION     DATIQC010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4218
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235608"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..500)
                     /locus_tag="VLM17_07745"
     CDS             complement(<1..500)
                     /locus_tag="VLM17_07745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65476.1"
                     /translation="MIRQGLVGMALALSAQAAVAGTVAVDGVSVALPVDVSEAKRERE
                     FELKDAFIGRGNETRLYDIPREGPHRVLLSGTVRSLHLKSAPSLPQGDPVKNRDAQLA
                     SRRAKDATADLEALTVAGSPALLQLSTIKGDEGDTAFAELNVYRPTGAIFIVLAYPDQ
                     AMTRDAV"
     gene            complement(552..1346)
                     /locus_tag="VLM17_07750"
     CDS             complement(552..1346)
                     /locus_tag="VLM17_07750"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011260172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HSR65477.1"
                     /translation="MRQYLDLLRHVLEHGAEKADRTGTGTRSVFGWQMRFDLAEGFPL
                     VTTKKLHLRSIIHELLWFLRGETNIAYLRDNKVTIWDEWADGDGELGPVYGKQWRRWT
                     GGDGSEIDQMKWVVDEIRRNPDSRRLIVSAWNVADLPKMALMPCHTQFQFYVADGKLS
                     CQLYQRSADIFLGVPFNIASYALLTHMVAQVTGLGVGDFVHTLGDAHLYSNHFDQARE
                     QLSRTPRPLPRLRLNPEVRDLFAFTFDDIAIEGYDPLPAIKAPVAV"
     gene            complement(1357..2241)
                     /gene="lgt"
                     /locus_tag="VLM17_07755"
     CDS             complement(1357..2241)
                     /gene="lgt"
                     /locus_tag="VLM17_07755"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HSR65478.1"
                     /translation="MIFLHQIDPIALALGPLKIHWYGLMYLLGFAAAWWLGRNRIHAG
                     RLPGVDEHAYGDLMFYAMLGVVIGGRVGYILFYDLPAYIAHPLQVLKIWEGGMSFHGG
                     LLGVCAAVWLWSRRRRLHFMDTIEFIAPLVPPGLGFGRLGNFINGELWGKLTHAGWGV
                     VFPASLPMPYAAMSPAQLRAQFEAGALNAFARHPSQLYQFALEGFVLFVAVWWFSDRP
                     RPRYAVAGLFALLYGLFRFLVEFVRVPDEQLNYLAFGWLTMGQLLSLPLVLVGLFWLW
                     RSRGAPTLQPQPMPAAGK"
     gene            complement(2288..2776)
                     /locus_tag="VLM17_07760"
     CDS             complement(2288..2776)
                     /locus_tag="VLM17_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007972126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HSR65479.1"
                     /translation="MRLLRHLFAPSAQRLFPAATMDRIAAAIAEGERRHAGQVLFAVE
                     PALHWRAVLAGVDARRSAEHAFARLRAWDTEANNGVLLYLLLADHRIEIVADRGLRGV
                     VDESHWRAICERMEVGLRGGDAEAAVIGAVGALSDLLTHHFPAPAGGKAGNELPDRPQ
                     IL"
     gene            complement(2785..3672)
                     /locus_tag="VLM17_07765"
     CDS             complement(2785..3672)
                     /locus_tag="VLM17_07765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016900774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HSR65480.1"
                     /translation="MRWLRPLALLALLLACAGAWAQQLAPIPPLDSPVVDTTGTLSDA
                     QKQQLVQQALALQQRKGSQLQVLVVPTTQPEDIAPYTQRVFDQVRLGRKGIDDGVLLV
                     VAKDDHRVRIQPGYGLEGAIPDAIANRIIQEYLVPKFRAGDYAGGLLDGTAMLARLID
                     GEPLPAPMADNRAERDEGASWPFALFAAFIVAQIARGILGRAPTPLRGLFGAAAAGGV
                     AWLLSSLLLVGGIGAFIGLFLGLARPGRTRFAGPGGWGGMGGPWAGGGGFGGGGGFGG
                     GGWGGGGGMSGGGGASGSW"
     gene            complement(3699..>4218)
                     /locus_tag="VLM17_07770"
     CDS             complement(3699..>4218)
                     /locus_tag="VLM17_07770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HSR65481.1"
                     /translation="DLIPNLVNTVKGYASHEERVLTEVTEARAKVSQINVNANDAQSL
                     AQFQQAQGELSSALSRLLVVTENYPNLKADQSFRDLQAQLEGTENRITVARGRYIQSV
                     QDYNTYIRQFPVNLTAMMFHYAPKPNFTVENERQIQQAPNVDFNTAPPAAPAQPAPAQ
                     PQQPAPQPAPGG"
BASE COUNT          620 a         1474 c         1516 g          608 t
ORIGIN      
        1 accgcgtcgc gcgtcatcgc ctggtcggga tacgcgagca cgatgaagat cgcgccggtc
       61 ggccggtaga cgttcagctc ggcgaatgcg gtatcgccct cgtcgccctt gatggtgctc
      121 agctgcagca gggccggcga gccggcgacg gtcagggctt ccaggtcggc ggtcgcgtcc
      181 ttcgcacgcc ggctggcgag ctgcgcgtcg cggttcttca cgggatcgcc ctgcgggagc
      241 gaaggcgcgg acttcaggtg cagcgagcgc accgtgccgc tgagcaggac gcggtgcggg
      301 ccttcgcgcg ggatgtcgta gagcctggtt tcgttgccgc gcccgatgaa tgcatccttg
      361 agctcgaact cgcgctcgcg cttggcctcg gaaacgtcga ccggcaacgc gaccgatacg
      421 ccgtcgacgg ccacggtgcc cgccaccgcc gcctgcgccg acaacgccag cgccatgccc
      481 accagtccct gcctgatcat cctgctttcc cctgttccct gcagtgaatg gcggctcccc
      541 gccgcccgtt cctataccgc caccggcgcc ttgatcgccg gcagcgggtc gtagccttcg
      601 atcgcgatgt cgtcgaaggt gaacgcgaac aggtcgcgca cctccgggtt caggcgcagc
      661 ctcggcagcg ggcgcggcgt gcgcgagagc tgctcgcgcg cctggtcgaa gtggttggaa
      721 tacaggtgcg cgtcgccgag ggtgtgcacg aagtcgccca cgcccaggcc ggtcacctgc
      781 gccaccatgt gggtcagcaa cgcgtagctg gcgatgttga agggcacgcc gaggaagatg
      841 tcggcgctgc gctggtacag ctggcagctc agcttgccgt ccgccacgta gaactggaac
      901 tgcgtgtggc agggcatcag cgccatcttc ggcaggtcgg cgacgttcca ggcactcacg
      961 atcaggcggc gcgagtcggg gttgcggcgg atctcgtcga ccacccattt catctggtcg
     1021 atctcgctcc cgtcgccgcc ggtccagcgg cgccactgct tgccgtagac ggggccgagc
     1081 tcgccgtcgc cgtcggccca ttcgtcccag atcgtgacct tgttgtcgcg caggtaggcg
     1141 atgttggtct cgccccgcag gaaccacagc agctcgtgga tgatcgagcg gaggtgcagc
     1201 ttcttggtgg tgaccagcgg gaagccttcg gcgaggtcga agcgcatctg ccagccgaag
     1261 acgctgcgcg tgccggtgcc ggtgcggtcg gccttctccg cgccgtgctc gagcacgtgc
     1321 cgcagcaggt cgaggtactg cctcatgcgt ccgcgctcac ttgcccgcgg cgggcatcgg
     1381 ctgcggctgc agcgtgggcg cgccgcgcga gcgccacagc cagaacaacc cgaccaggac
     1441 cagcggcagg ctcagcagct ggcccatggt cagccagccg aaggcgaggt agttgagctg
     1501 ctcgtcgggc acgcgcacga actcgaccag gaagcggaac aagccgtaca gcagcgcgaa
     1561 caggcccgcc accgcgtagc gcgggcgcgg cctgtcggag aaccaccaga cggcgacgaa
     1621 caggacgaag ccttcgagcg cgaactggta gagctgggaa ggatgccgag cgaacgcgtt
     1681 cagcgcgccg gcctcgaact gcgcgcgcag ctgcgcgggc gacatcgccg cgtagggcat
     1741 cggcagggac gccgggaaca ccacgcccca gccggcgtgc gtgagcttgc cccacagctc
     1801 gccgttgatg aagttgccca gccggccgaa gccgagtccc ggcggcacca gtggggcgat
     1861 gaactcgatc gtgtccatga agtgcagccg acggcggcgc gaccacagcc acaccgcggc
     1921 gcacacgccg agcaggccgc cgtggaagct catcccgcct tcccagatct tcagcacctg
     1981 cagggggtgg gcgatgtagg ccggcaggtc gtagaacagg atgtaaccga cgcgaccgcc
     2041 gatcaccacg ccgagcatcg cgtagaacat caggtcgccg taggcatgct cgtcgacgcc
     2101 cggcagccgg ccggcgtgga tgcggttgcg gcccagccac cacgcggcgg cgaagccgag
     2161 caggtacatc aggccgtacc agtggatctt gagcgggccg agcgcgaggg cgatcgggtc
     2221 gatctggtgc aggaagatca tgcggcgatg cggcctcgcg gaacgaccgg cctattgtgc
     2281 ccgacgctca caggatctgc ggccggtcgg gcagttcgtt gccggccttg ccgccggcgg
     2341 gcgcggggaa atggtgggtg agcaggtcgg acagcgcgcc gaccgcgccg atcaccgccg
     2401 cctcggcgtc gccgccgcgc aggccgactt ccatgcgttc gcagatcgcg cgccagtgcg
     2461 attcgtcgac gacgccgcgc aggccgcggt cggccacgat ctcgatgcga tggtcggcga
     2521 gcagcaggta cagcagcacg ccgttgttgg cttcggtatc ccacgcgcgc aggcgcgcga
     2581 aggcgtgctc ggcgctgcgg cgcgcatcga cgccggcgag cacggcgcgc cagtgcaggg
     2641 cgggctcgac cgcgaacagc acctggccgg catggcgtcg ctcgccctcg gcgatcgccg
     2701 cggcaatgcg gtccatcgtc gccgccggga acaggcgctg cgcggacggt gcgaacagat
     2761 ggcgcaacag gcgcatcgac cctcctacca gctgccggag gcgccgccgc ccccgctcat
     2821 gccgcccccg ccgccccagc cgccgccgcc gaagccaccg cctcccccga acccgccgcc
     2881 gccggcccag gggccgccca tgccgcccca accgccgggg ccggcgaacc gcgtgcggcc
     2941 cggccgcgcg aggccgagga acagcccgat gaaggcgccg atgccgccga ccagcagcag
     3001 cgaggacagc agccaggcga cgcctcccgc ggcggccgcg ccgaacaggc cgcgcagcgg
     3061 cgtcggcgcg cgccccagga tgccgcgcgc gatctgggcg acgatgaacg cggcgaacag
     3121 cgcgaacggc cacgacgcgc cctcgtcgcg ctccgcccgg ttgtcggcca tcggcgcggg
     3181 cagcggttcg ccgtcgatca gcctggccag catcgcggtg ccgtccagca gcccgcccgc
     3241 gtagtcgccg gcgcggaact tcggcaccag gtattcctgg atgatgcggt tggcgatcgc
     3301 gtcgggaatc gcgccctcca ggccgtaacc gggctggatg cgcacgcggt ggtcgtcctt
     3361 cgccaccacc agcagcacgc cgtcgtcgat gcccttgcgg ccgagcctga cctggtcgaa
     3421 cacgcgctgg gtgtagggcg cgatgtcctc cggctgggtg gtcggcacca ccagcacctg
     3481 cagctggctg cccttgcgct gctgcagggc gagcgcctgc tgcacgagct gctgcttctg
     3541 ggcgtcgctg agcgtgccgg tggtgtcgac gaccggcgag tcgagcggcg ggatcggcgc
     3601 cagctgctgc gcccacgcgc ccgcgcaggc gagcagcagg gcgagcagcg cgagcgggcg
     3661 cagccagcgg atcacgtcgg gcgcgatgcg gcgtgcgctc agccgccggg agccggctgc
     3721 ggcgccggtt gctgcggttg tgccggcgcc ggttgcgcgg gcgcggccgg cggcgcggtg
     3781 ttgaagtcga cgttcggcgc ctgctggatc tgccgctcgt tctcgacggt gaagttcggc
     3841 ttcggcgcgt agtggaacat catcgccgtc aggttcaccg ggaactggcg gatgtaggtg
     3901 ttgtagtcct gcaccgactg gatgtagcgg ccgcgcgcga cggtgatgcg gttctcggtg
     3961 ccttccagct gcgcctgcag gtcgcggaag gactggtcgg ccttgaggtt cggatagttc
     4021 tcggtcacga ccagcagacg gctcagcgcg ctcgacagct cgccctgcgc ctgctggaac
     4081 tgcgccagcg actgggcgtc gttggcgttg acgttgatct ggctgacctt cgcccgcgct
     4141 tcggtcactt ccgtcagcac gcgctcctcg tgcgaggcgt aacccttcac cgtgttgacg
     4201 aggttcggaa tgaggtcc
//
LOCUS       DATIQC010000365         3671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_129731, whole genome shotgun sequence.
ACCESSION   DATIQC010000365 DATIQC010000000
VERSION     DATIQC010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129731"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VLM17_07775"
     CDS             complement(<1..866)
                     /locus_tag="VLM17_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase"
                     /protein_id="HSR65482.1"
                     /translation="MDPTPLVPVDPLIVAISSRALFDLEDSHALFEREGLEAYAGFQR
                     AHEDELLAPGIAFPLVRKLLALNEGAPPEAPRVEVILISRNSADTGLRIFNSIEHHDL
                     AIRRAAFSNGAPPYPYIRPFGADLFLSTHGEDVRKALAAGVAAATILPAKAPQRRSDQ
                     LRIAFDGDAVIFGDESERVSREGGLDAFAEHERSRAGEPLSGGPFRGFLDALQRLQKA
                     FPAGDDAPIRTALVTARSAPAHKRVILTLREWGVRLDEALFLGGRAKGPFLAAFGADI
                     FFDDSAHNIDSAR"
     gene            complement(906..1340)
                     /locus_tag="VLM17_07780"
     CDS             complement(906..1340)
                     /locus_tag="VLM17_07780"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65483.1"
                     /translation="MALEAIRPIAESRRQRIVVEGPAAPLFVEADPARLVQVFGNLLN
                     NACKFGPEAGHVFIQVASQDGMALVRVRDEGVGIAAEQLPRIFEMFAQVEEPLVRANG
                     GLGIGLALVRGLVEMHGGSVTAHSDGPGQGSEFVVRLPLSGG"
     gene            complement(1404..1997)
                     /locus_tag="VLM17_07785"
                     /pseudo
     CDS             complement(1404..1997)
                     /locus_tag="VLM17_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159322.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
     gene            complement(2058..2459)
                     /locus_tag="VLM17_07790"
                     /pseudo
     CDS             complement(2058..2459)
                     /locus_tag="VLM17_07790"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
     gene            complement(2497..3267)
                     /locus_tag="VLM17_07795"
     CDS             complement(2497..3267)
                     /locus_tag="VLM17_07795"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005919766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HSR65484.1"
                     /translation="MPSQPRFAFLASHADGAQAAQQALEERHGQHAPEEADVLVALGG
                     DGFMLQTLHRHGSLGKPVYGMKLGSLGFLMNHHHEADLLARVAAAEPAVLRPLEMLAQ
                     TESGASVGSLAYNEVSLLRQTRQAAHLAIDLNGKPRLDELICDGVMVATAAGSTAYNY
                     SAGGPILPLGASVIALTPIAAFRPRRWRGALLKSSTEVRFRVLDPYKRPVSATADSHE
                     VRDVVEVTIRESQDRTVTLLFDPEHNLEERILSEQFVV"
BASE COUNT          532 a         1276 c         1328 g          535 t
ORIGIN      
        1 cgggcgctgt cgatgttgtg cgcggagtcg tcgaagaaga tgtccgcgcc gaacgccgcc
       61 aggaacggcc ccttggcgcg gccgccgagg aacagcgcct cgtccaggcg cacgccccat
      121 tcgcgcaggg tcaggatcac ccgcttgtgc gcgggcgccg agcgcgcggt gaccagcgcg
      181 gtgcggatcg gcgcgtcgtc gccggcggga aatgccttct gcagccgctg cagcgcgtcg
      241 aggaaaccgc ggaacgggcc gccggacagc ggctcgccgg cgcgactgcg ctcgtgttcg
      301 gcgaatgcgt ccaggccgcc ctcgcgcgac acccgctcgg actcgtcgcc gaagatcacc
      361 gcgtcgccgt cgaacgcgat gcgcagttgg tcggagcgcc gctgcggcgc cttggccggc
      421 aggatggtcg ccgcggcgac gccggccgcc agcgccttgc gcacgtcctc gccgtgggtg
      481 gagaggaaca ggtcggcgcc gaacgggcgg atgtacgggt acggcggcgc gccgttgctg
      541 aaggccgcgc ggcggatggc gaggtcgtgg tgctcgatcg agttgaagat gcgcaggccg
      601 gtgtccgccg aattgcgcga gatcaggatc acttcgaccc gcggcgcctc cggcggcgcg
      661 ccctcgttga gcgccagcag cttgcgcacc agcgggaagg cgatgccggg cgcgagcagc
      721 tcgtcctcgt gcgcgcgctg gaagcccgcg tacgcctcca ggccctcgcg ctcgaacagc
      781 gcatggctgt cctccaggtc gaacaacgcg cgggaggaga tcgcgacgat cagcggatcg
      841 acgggaacga gcggcgtggg gtccatgcgg gcagtatccg ccagcccgtc gcgccaggcg
      901 agacgtcagc cgccggacag tggcagccgc acgacgaact cgctgccctg ccccggtccg
      961 tcgctgtgcg cggtcacgct tccgccatgc atctcgacca ggccgcgcac cagggccagg
     1021 ccgatgccca gcccgccgtt ggcacgcacc aggggttcct ccacctgggc gaacatctcg
     1081 aagatccgcg gcagctgctc ggcggcgatg ccgacgccct cgtcgcgcac ccgcaccagc
     1141 gccatcccgt cctgcgaagc cacctggatg aaaacgtggc ccgcttccgg accgaacttg
     1201 caggcattgt tgagcaggtt gccgaacacc tgcaccagcc gcgcgggatc ggcttccacg
     1261 aagagcggcg ccgccggccc ctcgacgacg atgcgctggc gccgggactc ggcgatgggc
     1321 cggatcgcct ccagcgccat ccgcaccggc tccgcgaggt cgatgcggtc gcgccgcaat
     1381 tcgatcttgc cgcggctgat gcggttgacg tccagcaggt cgtcgacgag tcgcaccatc
     1441 tgcccgacct ggcgctcgag cacgtcgaag gcctgtcgcg ccatcggtcc gtcgccgtcg
     1501 gtcaaccgca tgatctgcag ggcattgacg atcggggcga gcggattgcg cagttcatgg
     1561 gcgagcagcg ccaggaattc gctcttgcgc cggtccgctt cggcgaagct gtcggccagc
     1621 gcacgcaatt cgtcggccgc ctggcgttgc gcggtcgcgt cgcgggtcgt tccggcgacg
     1681 gcttccactt ccccgtccgg cccgatgatc gggacgaaga tgtagtcgta gacgcgccgg
     1741 ccattggtgc cggtgaaggg cacctcgccg cggatcggtt gccgggtggc gaccacctgt
     1801 tcgatctcgc gatcgtgcat ggcggcgtgc catggctcgt agccgagctc gaggcagttg
     1861 cgtccgatcg cctcgtccca gctgcgcccc cacatccgca gcagcgccgc gttggcgtag
     1921 gtgaagcggt ggtcgagccc gaacacgtag accaggtccg gcgtggcgga caggatggtg
     1981 tcgtagagcc tgcgcaggcg atcgggttcg cgcgcgagtg cggacacctc ctggcgcacg
     2041 gcgacttcgg acgagacgtc gcggaaatag cagaccacgc cggatccgcc gcccggcagc
     2101 tgcaggcggt tgatctgcca cgcgtaggat tcgacctgcc cccggtcctg ccggacctcg
     2161 acgcgttccg ggacggagaa cgcctcgccg gtggcgagcg tatgccgaaa gcgggtgatg
     2221 acctcgtccg cgtaagccgg tggccagagc ctgcggatca cctggcaaaa gtcctcgccc
     2281 acgacgtcca cgtcgccgaa caccggtcgg gcggtgcggt tcacggcgat gatgcggaag
     2341 ccggcgtcga ccaggtaggc gccgagcggc gcgttgtcga gcaacacttc gaacaggtcg
     2401 attccgttcg cgggttccgc ggaaaccgaa tccgacgcgg ggaaactcgt ggttgccacg
     2461 gcgatccagt gcgtgccgcg agggcaaggc gggcggttat accacgaact gttcgctgag
     2521 gatccgctcc tcgaggttgt gctcggggtc gaacagcagc gtgaccgtgc ggtcctgcga
     2581 ttcgcggatg gtgacttcga ccacgtcgcg cacctcgtgc gagtcggcgg tcgcgctcac
     2641 cgggcgcttg taggggtcta gcacgcggaa gcgcacctcg gtcgacgact tcagcagggc
     2701 cccgcgccag cgccgcgggc ggaacgcggc gatcggggtc agcgcgatca cgctggcgcc
     2761 cagcggcagg atcggcccgc cggcggaata gttgtaggcg gtgctccccg cggcggtggc
     2821 gaccatcacg ccgtcgcaga tcagctcgtc caggcgcggc ttgccgttga ggtcgatggc
     2881 caggtgcgcg gcctggcggg tctgccgcag cagcgagacc tcgttgtagg cgagcgagcc
     2941 gacgctggcg cccgactccg tctgtgcgag catctccagc ggacgcagca cggccggttc
     3001 ggcggcggcg acgcgcgcga gcaggtccgc ctcgtggtga tggttcatca ggaagcccag
     3061 cgaccccagt ttcatcccgt acacgggctt gccgaggctg ccgtggcgat gcagcgtctg
     3121 cagcatgaag ccgtcgccgc cgagcgcgac cagcacgtcg gcctcctcgg gcgcgtgctg
     3181 gccgtgccgt tcctccagcg cctgctgtgc cgcctgcgcg ccatcggcgt ggctggcgag
     3241 gaaggcgaag cggggctggc tgggaatggg catcggcggc tcctgcgctg gcggcgagca
     3301 taacgcgagg gttggccggg cgcctgccgg ctccattcac ggtccgccgg cgtcgcggac
     3361 agcgaacgtc gaagcccgag gaatcaccgc gcaccgcgcc cgcgcggact gcccgacctg
     3421 tcgaagagcg cgcagctccg tccgtggtgc gacaggccca acgaccggag cctccgacgg
     3481 ttcggtgtcc gcgcgaccgg ccgccaggcg tccccgtccg tggtgtcgac cgccaccacg
     3541 cacggggtcg cgcgggcctc agccctccgc ttccgccatc tgcgccaggc gccgcaccgc
     3601 gaccgaggcg gtcgggtagt cgagcgtctt ctgcgccatc agctcgttga acatctgctg
     3661 ggtgaagcgc a
//
LOCUS       DATIQC010000366         3355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_589439, whole genome shotgun sequence.
ACCESSION   DATIQC010000366 DATIQC010000000
VERSION     DATIQC010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_589439"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VLM17_07800"
     CDS             complement(<1..694)
                     /locus_tag="VLM17_07800"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HSR65485.1"
                     /translation="MTASTLPRYNIYEAIHKGLRARMGQVLVAVGQVDVDDEDDVHGV
                     VVQLRMLLEMMRGHLAAENAFVHAAMEARAPGSSAAIADEHVHHEHDMSELEAACNAL
                     LRAPAAHRQAIADHAYAQLDRFVRDNLAHMRYEETEHNATLWSVYADDEIRAIERELV
                     GSIPPEKKLHYIASMFPALPTRERARLLDGIRASAPAEAYAVIEATVLPLLDDAPRAR
                     LARARAAAPAEAV"
     gene            899..1564
                     /locus_tag="VLM17_07805"
     CDS             899..1564
                     /locus_tag="VLM17_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017355111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HSR65486.1"
                     /translation="MSASRSWPLFPRRHPSAFLLAAQLLSLLLYPAMDNTQEGRLLFG
                     AVALVVIPLAVWVVNRSPSSTGIAWLLAVPAIALTAAGVALGLPRMLPWSASLEALLY
                     FYAAGSLIHYMLRDPHVTSDDLFAAGATFTLLAWGFAYAYFVCQAWLPDSFTGLQPAR
                     PRTWVELLFLSFTNLSATGAGDVIPVRAPARVLVMLEQFAGVGYVAEVVSRLIGLTLT
                     RAS"
     gene            complement(1578..2132)
                     /locus_tag="VLM17_07810"
     CDS             complement(1578..2132)
                     /locus_tag="VLM17_07810"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HSR65487.1"
                     /translation="MVRLLGISGSLRAQSFNTALLRAAQAAAGDGVRFDVATLHGIPL
                     YDGDVEQRDGLPAAVKALQEQVVDSDGVLLVTPEYNNGIPGVFKNAIDWLSRPADGIP
                     RVFGGRAFAVIGASPGGFGTILSQAAWLPVLRTLGTRQWAGGRLMVSRAQTVFDAQGA
                     LTDDATRQRLAEFVRGFAAFAQAR"
     gene            2256..2762
                     /locus_tag="VLM17_07815"
     CDS             2256..2762
                     /locus_tag="VLM17_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HSR65488.1"
                     /translation="MAPKPERSPAGQDPDLLRRLLRARDRMDAASHEAWPVARLARVS
                     HVSPAHFARAFRRAFGVPPHRYLLTRRIERATAMLRDTALPVLDIALRAGWNSLGTFG
                     RTFRDVTGETPGDFRARMRAAPHALAQAPACYVSAALRPGLTIAVSEKRRRAGGGQNG
                     ASGTEDRA"
     gene            2759..3169
                     /locus_tag="VLM17_07820"
     CDS             2759..3169
                     /locus_tag="VLM17_07820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014037254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR65489.1"
                     /translation="MSGGVGVVGLYVRDQDEALAFYVDKLGFRVHTDARNGDYRWLTV
                     QHPAQPSFQLGLFLPQPPTVDAATAQVLRECVAKGAMPPLVLEVEDCRAAYERMRAAG
                     VEFTQAPIARYGNVDASFRDPSGNGWKMLQARNG"
BASE COUNT          435 a         1199 c         1256 g          465 t
ORIGIN      
        1 cgaccgcctc cgccggcgcg gctgcgcgcg cgcgcgccag gcgggcgcgc ggcgcgtcgt
       61 cgagcagcgg cagcacggtc gcctcgatca ccgcgtaggc ctccgcgggc gcggaggcgc
      121 ggatgccgtc gagcaggcgc gcgcgctcgc gggtgggcag ggccgggaac atgctggcga
      181 tgtagtgcag cttcttctcc ggcgggatcg acccgaccag ctcgcgctcg atcgcgcgga
      241 tctcgtcgtc ggcgtacacc gaccacagcg tggcgttgtg ttcggtctcc tcgtagcgca
      301 tgtgcgcgag gttgtcgcgc acgaagcggt ccagctgcgc gtaggcgtgg tccgcgatcg
      361 cctggcgatg cgcggccggc gcgcgcagca gggcgttgca ggcggcttcc agctcggaca
      421 tgtcgtgctc gtggtggacg tgctcgtcgg cgatggcggc gctggagccg ggcgcgcgcg
      481 cttccatcgc ggcatgcacg aacgcgttct ccgcggcgag gtggccgcgc atcatctcca
      541 gcagcatgcg cagctgcacg accacgccgt gcacgtcgtc ctcgtcgtcg acgtcgacct
      601 ggccgacggc gaccagcacc tggcccatgc gcgcacgcag gcctttgtgg atcgcttcgt
      661 agatgttgta gcggggcagg gtgctggcgg tcatcgcgac gactccgggg ggcaggcccg
      721 tggggggcgg gagtcacgca gcctaggcaa ccgcgacggc gcgcgttgct aaatcttgcc
      781 taaggcgatc ctaaaaactt gctaagggcg cgcgcgcggc accggtggcc ggaccgccgt
      841 gcctgcgccg cgggcacggg cacgggacgg cgacgcccgg ccggctaggc tcgccgccat
      901 gtccgcatcc aggtcctggc cgctgtttcc ccgccggcat ccgtcggcct tcctgctcgc
      961 ggcgcagctg ctgagcctgc tgctgtaccc ggcgatggac aacacccagg aaggacgcct
     1021 gctgttcggc gcggtcgcgc tggtggtgat cccgctggcg gtgtgggtgg tcaaccgcag
     1081 tccgtcgagc accggcatcg cctggctgct ggcggtgccg gcgatcgcgc tcacggcggc
     1141 gggcgtggcg ctggggctgc cgcggatgct gccgtggtcg gcctcgctgg aggcgctgct
     1201 gtacttctac gcggccggca gcctgatcca ctacatgctg cgcgatccgc acgtcacctc
     1261 cgacgacctg ttcgccgccg gcgcgacctt caccctgctg gcgtgggggt tcgcctatgc
     1321 ctacttcgtc tgccaggcgt ggctgccgga cagcttcacc ggcctgcagc cggcgcgccc
     1381 gcgcacgtgg gtggagctgc tgttcctcag cttcaccaac ctctcggcca ccggcgccgg
     1441 cgacgtcatc ccggtgcgcg cgcccgcgcg cgtgctggtg atgctcgagc agttcgccgg
     1501 cgtcggctac gtcgccgagg tggtctcgcg cctgataggg ctcacgctga ctcgcgcgtc
     1561 gtgatccgcg ccacgcgcta gcgcgcctgc gcgaacgcgg cgaacccgcg cacgaactcc
     1621 gccagccgct gccgggtggc gtcgtcggtg agcgcgccct gcgcatcgaa caccgtctgc
     1681 gcgcgcgaca ccatcaggcg gccgccggcc cactggcggg tgccgagcgt gcgcagcacc
     1741 ggcagccacg cggcctgcga caggatggtg ccgaaaccgc cgggcgaagc gccgatcacc
     1801 gcgaacgcgc gcccgccgaa cacgcgcggg atgccgtcgg ccgggcgcga cagccagtcg
     1861 atcgcgttct tgaacacgcc ggggatgccg ttgttgtact ccggcgtcac cagcagcacg
     1921 ccatcgctgt cgaccacctg ctcctgcagc gccttcaccg ccgcgggcag gccgtcgcgc
     1981 tgctcgacgt cgccgtcgta cagcggaatg ccgtgcaggg tagcgacgtc gaagcgcacg
     2041 ccgtcgccgg cggcggcctg cgcggcgcgc agcagcgcgg tgttgaacga ctgcgcgcgc
     2101 aggctgccgg aaatgccgag gaggcggacc atgcgtgtgc tcccgggagg ccggtggcgg
     2161 cgaagtctac gcgccgctgc ggtgcacgcc gtgacggacc ggggtgcccg cgtgcgcgcc
     2221 ggccgggaat tgcctagggt ggcggcatcg acgccatggc ccccaaaccg gaacgctccc
     2281 ccgccgggca ggatcccgac ctgctgcgcc gcctgctgcg cgccagggac cgcatggacg
     2341 cggcgtcgca cgaagcctgg ccggtcgcgc ggctggcccg ggtgagccac gtgtcgccgg
     2401 cgcatttcgc gcgtgcgttc aggagggcgt tcggcgtgcc gccgcatcgc tacctgctca
     2461 cgcgccggat cgagcgcgcg acggcgatgc tgcgcgacac cgcgctgccg gtcctcgaca
     2521 tcgcgctgcg ggcgggctgg aacagcctcg ggaccttcgg tcgcaccttc cgcgacgtca
     2581 ccggcgagac ccccggcgac ttccgtgcgc gcatgcgcgc cgcgccgcac gcgctggcgc
     2641 aagcgccggc ctgctacgtg agcgccgcgc tgcggcccgg cctcaccatc gcagtttcgg
     2701 agaagcgccg gcgggcgggc ggcggccaga atggcgcttc cgggacggag gacagggcat
     2761 gagcggagga gtcggggtgg tggggctgta cgtgcgcgac caggacgagg cactggcgtt
     2821 ctatgtcgac aagctcggct tccgggtgca caccgacgcg cgcaacggcg actaccgctg
     2881 gctgaccgtg cagcatcccg cgcagccgtc gttccagctc ggcctgttcc tgccgcagcc
     2941 gccgacggtc gacgccgcca ccgcgcaggt cctgcgcgaa tgcgtggcca agggcgccat
     3001 gccacccttg gtgctcgagg tcgaggactg ccgcgcggcc tacgagcgca tgcgcgccgc
     3061 cggcgtggag ttcacccagg cgccgatcgc ccgctacggc aacgtcgatg ccagcttccg
     3121 cgatccctcc ggcaacgggt ggaagatgct gcaggcgcgg aacggatgag gaaggcgacc
     3181 atggccggca aggtggcgac gaaggcggcg aaggcgacga aggcgacgaa ggccgcgagg
     3241 agcgtggcga agcgcgccgg cgggaaggac gcggaggcgg tgggcgccgc cgaacgcatc
     3301 gaccgcagga tcgcaagcct cggcgactgg cgcggcgaac gcctggccga ggtcc
//
LOCUS       DATIQC010000367         3740 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_518284, whole genome shotgun sequence.
ACCESSION   DATIQC010000367 DATIQC010000000
VERSION     DATIQC010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3740
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518284"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..368)
                     /locus_tag="VLM17_07825"
     CDS             complement(<1..368)
                     /locus_tag="VLM17_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis isomerase"
                     /protein_id="HSR65490.1"
                     /translation="MTPRRYLQLDVFADRPGAGNPLGVVLDPAGFDDAAMQAFAAWTN
                     LSETIFLLPPGAGADYRVRIFTPRQELPFAGHPSVGAAWAALYAGRAQARGGRLLQDC
                     AAGQLPVRIEGDGDARRVHVR"
     gene            528..3125
                     /locus_tag="VLM17_07830"
     CDS             528..3125
                     /locus_tag="VLM17_07830"
                     /EC_number="2.7.2.4"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/diaminopimelate
                     decarboxylase"
                     /protein_id="HSR65491.1"
                     /translation="MAETQRWVVLKFGGTSVSRRNRWDTIGQLAAKRTQEDDARVLVV
                     VSALSGVTNELQAIADGRDVEARVAALVGRHRAFCSEVDLDPDAVLGARLAALQALAC
                     DARAGSRPLDWQAEVLAQGELLSSTLGAAYLRAQGHDFGWCDAREWLAAVELPNASAW
                     ARRLAVNCRHDGDPATRARFATQPAPMLITQGFIARHGDGGTAILGRGGSDTSAAYFG
                     ALLGARRVEIWTDVPGMFSANPREVPDARLLTRLDYAEAQEIATTGAKVLHPRSIGPC
                     RDARVPMRILDTERPELPGTTIDASAATVPGVKAISRRNGIVLVSMESIGMWQQVGFL
                     ADVFERFKRHGLSIDLIGSSETNVTVSLDPSENLVTTNVLEALSADLAEVCRVKVIAP
                     CAAITLVGRGMRSLLHRLSDVWATFGQERVHLISQSSNDLNLTFVIDEADADGLIPQL
                     HAELIRSGAMPVQDDTVFGPSWRRIQEEGLAHGRPPRRVPWWVGERAALLAHARSGTP
                     RYVYDLATVRERARELSAIDAIDRRYYALKANPHPAILRALVEEGFGLECVSLGELEH
                     VFAHLPDLAPGRVLFTPSFAPRREYEAAFARGVTVTLDNLEALQRWPELFRGRALWLR
                     VDLGRGEGHHEKVRTGGAAAKFGLPLARFDAFLGEARALGVRITGLHCHLGSGIEDPA
                     HWRTVYAEVAGLAETLDGVDTIDIGGGLPVAYRDDDPEFDLAGWGAGLAELRAAYPRF
                     ALAIEPGRFLVAEAGALLLGVTQVVEKDGVRRIGCDAGMNALVRPTLYEAHHRIVNLG
                     RLGDAACALFDVVGPICESGDVLGHARPLPRATSEGDVLLVADAGAYGMAMANTYNLR
                     ALPAEDVIP"
     gene            3215..>3740
                     /locus_tag="VLM17_07835"
     CDS             3215..>3740
                     /locus_tag="VLM17_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HSR65492.1"
                     /translation="MFQRDAIQVFRFVRSTFDADTGVARLVYAFDDGPELVETVTVPG
                     APFVLDDARTAAAQRALRLLHLIAGVSYYKAAVPPGIRIDDDAIDADTAALLETVYVN
                     GLGEFAYRNGLDLHGRIRFPHGGPSPRPAPAGGRGGESAAGESPLPPAGEGQGEGECA
                     PTLGLRRHALVAIGG"
BASE COUNT          509 a         1358 c         1366 g          507 t
ORIGIN      
        1 cgcacgtgca cgcgccgggc gtcgccgtcg ccctcgatgc gcaccggcag ctgcccggcc
       61 gcgcagtcct gcagcagccg gccaccgcgt gcctgcgcgc ggccggcgta caacgcggcc
      121 caggccgcgc cgacgctcgg atggccggcg aacggcagct cctggcgcgg ggtgaagatg
      181 cgcacgcggt agtcggcgcc ggcgcccggc ggcagcagga agatggtttc ggacaggttg
      241 gtccaggccg cgaaagcctg catcgccgca tcgtcgaaac cggcggggtc cagcaccacg
      301 ccgagcggat tgccggcgcc cggccggtcg gcgaacacgt ccagctgcag gtagcggcgc
      361 ggcgtcatcc acattcgtcc tgtccacggc cgcgaaggcc gggggcgaaa cgcttagaat
      421 cgccgggctt tcgcgcgccc ttccggcggc cggccggcgc gaacgcgcat tctaggcccg
      481 cgtcgagccg atgcgggcgc taacccattc acgaggagag acgggcggtg gcggaaacgc
      541 agcggtgggt cgtactcaag ttcggcggca cttcggtgtc ccgccgcaac cgttgggaca
      601 cgatcgggca gctggccgcc aaacgcacgc aggaggacga cgcgcgcgtg ctcgtcgtgg
      661 tctccgcgct ctccggcgtg accaacgagc tgcaggcgat cgccgacggc cgcgacgtcg
      721 aggcgcgcgt cgcggcgctg gtcgggcgcc atcgcgcgtt ctgcagcgag gtcgacctcg
      781 accccgacgc cgtgctcggc gcgcgcctgg ccgcgttgca ggcgctcgca tgcgatgcgc
      841 gcgcggggtc gcgcccgctc gactggcagg ccgaggtgct ggcccagggc gagctgctgt
      901 cctcgaccct cggcgccgcc tacctgcgcg cgcaggggca cgatttcggc tggtgcgacg
      961 cgcgcgaatg gctcgccgcg gtcgaactcc ccaacgccag cgcgtgggcg cggcggctgg
     1021 cggtcaactg ccgccacgac ggcgacccgg cgacgcgcgc gcgcttcgcc acccagccgg
     1081 cgccgatgct gatcacccag ggcttcatcg cccgccacgg cgatggcggc accgcgatcc
     1141 tcggccgcgg cggttcggac acctcggcgg cgtacttcgg cgcgctgctc ggcgcgcggc
     1201 gggtcgagat ctggaccgac gtgcccggca tgttcagcgc caacccgcgc gaggtgccgg
     1261 acgcccgcct gcttacccgg ctcgattacg ccgaggcgca ggaaatcgcc accaccggcg
     1321 ccaaggtgct gcatccgcgt tcgatcggcc cctgccgcga cgcgcgcgtg ccgatgcgca
     1381 tcctcgacac cgagcgcccc gaactccccg ggaccaccat cgacgccagc gcggcgacgg
     1441 tgccgggcgt caaggcgatc agccgccgca acggcatcgt gctggtgtcg atggaatcga
     1501 tcggcatgtg gcagcaggtc ggcttcctcg ccgacgtgtt cgagcgcttc aagcgccacg
     1561 gcctgtcgat cgacctgatc ggctcgtcgg aaaccaacgt caccgtgtcg ctggacccga
     1621 gcgagaacct ggtcaccacc aacgtgctgg aggcgctgtc cgccgacctc gccgaggtgt
     1681 gccgggtcaa ggtgatcgcg ccgtgcgcgg cgatcaccct ggtcggccgc ggcatgcgct
     1741 cgctgctgca ccggctgtcc gacgtgtggg cgaccttcgg gcaggagcgc gtgcacctga
     1801 tctcgcagtc gtcgaacgac ctcaacctca ccttcgtgat cgacgaggcg gacgccgacg
     1861 gcctgatccc gcaactgcac gccgagctca tccgcagcgg cgcgatgccg gtgcaggacg
     1921 atacggtgtt cggcccgagc tggcgccgca tccaggagga gggcctcgcg catggccggc
     1981 cgccgcggcg ggtgccgtgg tgggtcggcg agcgcgccgc gctgctggcg catgcgcgca
     2041 gcggcacccc gcgctacgtc tacgacctcg ccaccgtgcg cgagcgcgcc cgcgagctgt
     2101 cggcgatcga cgcgatcgac cgccgctact acgcgctcaa ggccaatccg cacccggcga
     2161 tcctgcgcgc gctggtggag gaagggttcg ggctggagtg cgtgtcgctg ggcgagctgg
     2221 agcacgtgtt cgcccacctg cccgacctcg cgccgggccg cgtgctgttc accccgagct
     2281 tcgccccgcg gcgcgaatac gaggccgcct tcgcgcgcgg cgtgacggtg acgctggaca
     2341 acctcgaggc gctgcagcgc tggccggagc tgttccgcgg ccgcgcgctg tggctgcggg
     2401 tggacctcgg tcgcggcgaa ggccaccacg agaaggtgcg caccggcggc gcggcggcga
     2461 agttcgggct gccgctggcg cgtttcgatg cgttcctcgg cgaggcgcgc gcgctcgggg
     2521 tgcgcatcac cggcctgcat tgccacctcg gcagcggcat cgaggacccc gcgcactggc
     2581 gcacggtgta tgcggaagtg gcggggctgg ccgaaacgct cgacggcgtc gacaccatcg
     2641 acatcggcgg cggcctcccc gtcgcctacc gcgacgacga tccggagttc gacctggccg
     2701 gctggggagc cgggctcgcc gaactgcgcg cagcctaccc gcgcttcgcg ctcgccatcg
     2761 agccgggccg tttcctggtg gccgaggccg gcgcgctgct gctcggcgtg acgcaggtgg
     2821 tcgagaagga cggcgtgcgc cgaatcggct gcgatgcggg catgaacgcg ctggtgcgcc
     2881 cgacgctcta cgaggcgcac catcgcatcg tcaacctcgg ccgcctcggc gacgcggcct
     2941 gcgcgctgtt cgacgtggtc gggccgatct gcgaaagcgg cgacgtgctc ggccacgcgc
     3001 ggccgctgcc gcgtgcgacc tcggaaggcg acgtgctgct ggtcgccgac gccggcgcct
     3061 acggcatggc gatggcgaac acgtacaacc tgcgggcgct gccggcggaa gacgtgattc
     3121 cgtagggcgg gtttctaccc gccttcgaaa tgaagctacg gcgggccgaa gcccgcccta
     3181 cgacactggc aaggcaaagc gaatgagcaa gtggatgttc cagcgggacg caatccaggt
     3241 cttccgcttc gtgcgcagca ccttcgatgc ggacaccggc gtggcgcgtc tggtgtatgc
     3301 gttcgacgac ggccccgagc tggtcgagac cgttacggtg cccggtgcgc cgttcgtgct
     3361 cgacgacgcg cgcacagccg ccgcgcagcg cgcgctgcgc ctgctgcacc tgatcgccgg
     3421 cgtcagctac tacaaggcgg cggtgccccc ggggatccgc atcgacgacg acgccatcga
     3481 tgccgacacg gccgcgctgc tggagacggt ctacgtcaac ggcctcggcg agttcgccta
     3541 ccgcaatggc ctggacctgc acggccgcat ccgcttcccg cacggcgggc cctcaccccg
     3601 acccgctccc gcgggcggga gagggggcga aagcgcggct ggagaatccc ctctcccgcc
     3661 tgcgggggag gggcagggtg agggtgagtg cgcacccacg ctcggactgc gccggcatgc
     3721 gctggtcgcc atcggcggcg
//
LOCUS       DATIQC010000368         5679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_660403, whole genome shotgun sequence.
ACCESSION   DATIQC010000368 DATIQC010000000
VERSION     DATIQC010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5679
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660403"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VLM17_07840"
     CDS             complement(<1..754)
                     /locus_tag="VLM17_07840"
                     /inference="COORDINATES: protein motif:HMM:TIGR02276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65493.1"
                     /translation="MRTTERLACVALAALLSAAARAETAYVSDEQANVVHVIVAPEWS
                     NVSDIPVGRRPRGMVLSHDGHRLYVALGNDDRIDVVDLATRRVVDHLPSGPDPERFAL
                     SPDGQWLYTANESDSTVSFVDIAHRRVAHTVAVGAEPEGMAVSPDGRWVACTSESASL
                     VHFIDVAGAKLVDSVMVGTRPRDARFSADGRQLWVSSETRATVAVFDVATRKLVHTID
                     FDRDPRAPDTVQAVGIVLGPERGYVALGRGNGV"
     gene            complement(741..1637)
                     /locus_tag="VLM17_07845"
     CDS             complement(741..1637)
                     /locus_tag="VLM17_07845"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HSR65494.1"
                     /translation="MTRCVRTLATILAMATPGMAHAHGAHAEATAPGWTFDAWVVGPL
                     LASLAWYAVGSLRLRRRSTAATARHASAWWFFAGWLVLAAALVTPLHEAGERSFAAHM
                     LEHELLMLVAAPLLVLSRPLGIALWACPQPARRALAAGGHAIGAGWRVLTAPVAATLL
                     QAVALWLWHAPRLFDLALAHDGWHVLQHLSFLCTALLFWWAVLCGRGERRPGLAIGCL
                     FFTATISGALGALMAFSSSPWYAGYAASGLDAFGLTPAEDQQLAGLLMWVPGGMVHAG
                     AGLALLARRRAKGGRGGVDAYD"
     gene            complement(1634..1954)
                     /locus_tag="VLM17_07850"
     CDS             complement(1634..1954)
                     /locus_tag="VLM17_07850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65495.1"
                     /translation="MKFPSSASLKPWAGLVAGMGAAGLQHQLVSDALHFDCRYGDYDL
                     FVGLAALVAIAAGGLVSWSSLRADGDPSRRFVARMSLMATVLFALMVAWGIMAGAILP
                     ACPA"
     gene            complement(1965..2570)
                     /locus_tag="VLM17_07855"
     CDS             complement(1965..2570)
                     /locus_tag="VLM17_07855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HSR65496.1"
                     /translation="MKRETTPIDLAELPDYLFGSGSIGYWGGIAFMLIEGMGFVLAIG
                     AYFYLLPYEREWPPGASPPPLFWATTGVLVALLSEIPNILTSVCAKKQDKPGVQLWIV
                     VTSLFGVALIVLRAFEFHAFNVRWDQNAYGSITWALLILHHADLITDAYDTFVLAAMV
                     FLKPVDGRKFSDCDDNAVFWHFIVVTWVAVYVMVYWVPRWV"
     gene            complement(2576..4450)
                     /gene="ctaD"
                     /locus_tag="VLM17_07860"
     CDS             complement(2576..4450)
                     /gene="ctaD"
                     /locus_tag="VLM17_07860"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR02891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HSR65497.1"
                     /translation="MSARDANIDAQLARTWGDKPGLVGWLATTDHKRVGRRYLVTAIV
                     FFALAGALALVMRTQLALPENHLLSPDRYNQVFSMHGSVMMFLFAVPVMTAMGAYLVP
                     LMVGARAISFPRLNAFGYWIYLFGGLTIFVAFALDAGPEAGWTAYVPLSASDYSAGHR
                     SDIWSQMVNFTEVAALCVAAEVVTQFMVTRAPGMRLDRIPLFVWAQLVTAFMMMFAMP
                     SVMLASQALQSDRQFGTHFFTPGEGGDPLLWQHLFWFFGHPEVYIIFIPALGMISSIV
                     ETFARRPIFGHTAMVLAMVAIGFLSFGLWVHHMFATGLPPLGNSFYTLTSMLIAIPSG
                     VQIFCWIATLWLGRPRFATPLLFVLGFFALFVIGGLSGVMLASVPLDTQVHDSYFVVA
                     HFHYVLIGGAVFPLLGGFYYWFPKFTGRLLSERAGKVNFWLLFVGVNLTFFPMHWLGL
                     AGMPRRVYTWPAGLGWEWANMAATVGSYIVAVAVLLFVANVAWSLWRGEVAGDNPWDA
                     PGLEWATSSPPPPWNFTEVPEVEDLTPLWAPERLRWLRGLRSDKREMLLTSIAEARPQ
                     ARWGCPDPSLWPFWSALALTLQFIWTIFDPWGWVWASIPIAIALTVWFWPKKSEPSME
                     "
     gene            complement(4447..5394)
                     /locus_tag="VLM17_07865"
     CDS             complement(4447..5394)
                     /locus_tag="VLM17_07865"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR65498.1"
                     /translation="MRLTALAPAADQAQAIATVWQAMFWPNVAIYVAVLAALAWALWR
                     RRAASVETPESQARHARNWTRALLGWTIFIAAVLTAYTALSFVQDRHRLAHAPGALRV
                     RITSKQWWWSVEYLDPDPSRQVATANELHLPLGRMTRIELLSGDVIHSLWIPALNGKQ
                     DLIPGRTTELALTPRAVGRYLGQCAEFCGLQHAHMVLPVTVESPTAFATWLDAQRAPG
                     AAPASPSAERGKQLFESGPCAMCHAIAGTSADSHAGPDLTHIASRPLLAAGALPNDRA
                     HMAAWLSDPQAHKPGTNMPDPRLQPQEVSDLTDYLEGLR"
     gene            complement(5391..>5679)
                     /locus_tag="VLM17_07870"
     CDS             complement(5391..>5679)
                     /locus_tag="VLM17_07870"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSR65499.1"
                     /translation="AGGGAIGPALMDAEWRYGGSIEQIHASIAQGRPNGMPSFRGKIP
                     DDQIWQISAYIRTLSGNAPKYVAGGAPQGMAATPPTSRLPRLKPKTTEPGR"
BASE COUNT          971 a         1987 c         2001 g          720 t
ORIGIN      
        1 ccacgccgtt gccgcgcccg agcgccacgt agccgcgttc gggcccgagc acgatgccga
       61 ccgcctgcac ggtatccggc gcgcgcgggt cgcggtcgaa atcgatggtg tgcacgagct
      121 tgcgggtcgc cacgtcgaac accgccaccg tcgcacgcgt ctccgacgac acccacagct
      181 ggcggccgtc ggcgctgaac cgggcgtcgc gcggtcgggt gccgaccatc acgctgtcga
      241 cgagtttcgc gccggccacg tcgatgaagt gcaccaggct ggcgctctcc gaggtgcacg
      301 ccacccagcg tccgtcggga ctcaccgcca tgccttccgg ctcggcgccg acggcgaccg
      361 tgtgcgcgac gcgccggtgg gcgatgtcga cgaaggagac ggtgctgtcg ctttcgttcg
      421 cggtgtacag ccactggccg tcgggactga gggcgaagcg ctccgggtcc ggtcccgacg
      481 gcaaatggtc gaccacgcgc cgggtggcga ggtcgaccac gtcgatgcgg tcgtcgttgc
      541 cgagggccac gtacaggcgg tgcccgtcgt ggctcagcac catgccgcgc ggtcgcctgc
      601 cgaccgggat gtcggacacg ttcgaccact ccggcgcgac gatcacgtgc acgacgttgg
      661 cctgttcgtc ggagacatac gcggtctccg cgcgcgcggc ggcggacagc agcgccgcca
      721 gcgcaacgca ggcgaggcgt tcagtcgtac gcatcgacgc caccccgccc gcccttcgcc
      781 cgccggcgcg ccagcagcgc cagccccgcg cccgcgtgca ccatcccgcc gggcacccac
      841 atcagcaggc cggccagctg ctggtcctcc gccggcgtga ggccgaacgc gtccagtccg
      901 ctcgccgcgt aacccgcgta ccaggggctg gacgagaacg ccatcagggc gccgagcgcg
      961 ccgctgatcg tggcggtgaa gaacaggcag ccgatcgcga gcccgggccg gcgctcgccg
     1021 cgcccgcaca gcaccgccca ccagaacagc agcgccgtgc acaggaacga caggtgctgc
     1081 agcacgtgcc agccgtcgtg ggcgagcgcg aggtcgaaca ggcgcggcgc gtgccacagc
     1141 cacaacgcga ccgcctgcag cagcgtggcc gccaccggcg cggtgagcac gcgccagccg
     1201 gcgccgatgg cgtggccgcc ggccgccagc gcccgtcgcg ccggctgcgg acaggcccac
     1261 agcgcgatgc cgagcgggcg cgacagcacc agcagcggcg cggcgaccag catcagcagt
     1321 tcgtgctcga gcatgtgcgc ggcgaaggaa cgctcgcccg cctcgtgcag cggcgtcacc
     1381 agcgcggcgg ccagcaccag ccagccggcg aagaaccacc aggcgctggc gtggcgcgcc
     1441 gtcgcggcgg tggagcgacg tcgcaatcgc agggagccca ccgcgtacca ggccaggctg
     1501 gccagcaacg gtccgacgac ccatgcgtcg aaggtccacc ctggcgccgt cgcctcggca
     1561 tgcgccccat gcgcatgggc catgcccggc gtggccatcg ccaggatcgt cgccagcgtg
     1621 cggacgcaac gggtcatgcc gggcacgcgg ggaggatcgc gcccgccatg atgccccacg
     1681 ccaccatcag cgcgaacagc accgtcgcca tcaggctcat gcgggccacg aagcgccggc
     1741 tcgggtcgcc atccgcgcgc agggacgacc acgacaccag cccgccggca gcgatcgcca
     1801 ccagcgccgc aaggccgacg aacaggtcgt agtcgccgta acggcagtcg aaatgcaacg
     1861 catccgacac gagctggtgc tgcaggccag cggcgcccat gccggcgacc agtccggccc
     1921 agggcttgag gcttgcggaa gacgggaact tcatgggcgc gcgctcatac ccatcgcggg
     1981 acccagtaca ccatgacgta caccgccacc caggtgacca cgatgaaatg ccagaacacc
     2041 gcgttgtcgt cgcaatcgga gaacttgcgt ccatccaccg gcttgaggaa caccatcgcc
     2101 gcgaggacga aggtgtcgta cgcgtcggtg atcaggtcgg cgtggtgcag gatcagcagt
     2161 gcccaggtga tggacccgta ggcgttctgg tcccagcgca cgttgaaggc gtggaactcg
     2221 aaggcgcgca gcacgatcag cgcgacgccg aacagcgagg tcaccacgat ccagagctgc
     2281 acgcccggct tgtcctgctt cttggcgcag acggacgtca ggatgttcgg gatttccgac
     2341 agcaacgcga cgagcacgcc ggtcgtggcc cagaacagcg gcggcggcga tgcgccgggc
     2401 ggccactcgc gctcgtacgg cagcaggtag aagtacgcgc cgatcgccag cacgaagccc
     2461 atgccctcga tcagcatgaa ggcgatcccg ccccagtacc cgatcgagcc cgacccgaag
     2521 aggtagtcgg gcagctcggc caggtcgatg ggggtggtct cgcgcttcaa gcggctcact
     2581 ccatgctcgg ctctgacttc ttcggccaga accagaccgt cagtgcgatg gcgatcggaa
     2641 tcgaggccca cacccagccc cagggatcga agatcgtcca gatgaactgc agcgtcagcg
     2701 ccagggccga ccagaacggc cacaggctgg gatccggaca gccccagcgc gcctgcggtc
     2761 gcgcctcggc gatcgaggtg aggagcatct cgcgcttgtc gctgcgcaag ccgcgcagcc
     2821 accgcagccg ctccggcgcc cacagcggcg tgaggtcttc cacctccggc acctccgtga
     2881 aattccacgg cggcggcggc gaggacgtgg cccactccag gcccggcgca tcccacgggt
     2941 tgtcgccggc gacctcgcca cgccacaacg accacgccac gttggccacg aacagcagca
     3001 ccgcgaccgc gacgatgtaa cttccgaccg tggccgccat gttcgcccac tcccagccga
     3061 gcccggccgg ccacgtgtag acgcggcgcg gcatgcccgc caggccgagc cagtgcatcg
     3121 ggaagaaggt gaggttgacg ccgacgaaca gcagccagaa gttcaccttg cccgcgcgct
     3181 cggacagcag gcggccggtg aacttcggga accagtagta gaagccgccg aggagcggga
     3241 acacggcgcc gccgatcagc acgtagtgga agtgcgcgac gacgaagtag gagtcgtgca
     3301 cctgggtgtc gagcggcacc gaggcgagca tcacgccgga cagcccgccg atcacgaaca
     3361 gcgcgaagaa gccgagcacg aacagcagcg gcgtggcgaa gcgcggccgg cccagccaca
     3421 gcgtggcgat ccagcagaag atctgcacgc cgctggggat ggcgatgagc atgctcgtca
     3481 gggtgtagaa gctgttgccc agcggcggca ggccggtggc gaacatgtgg tgcacccaca
     3541 acccgaacga caggaagccg atcgccacca tcgccagcac catcgccgtg tggccgaaga
     3601 tcggccggcg cgcgaaggtc tcgacgatgc tggagatcat cccgagcgcg gggatgaaga
     3661 tgatgtagac ctcggggtgc ccgaagaacc agaacaggtg ctgccacagc agcggatctc
     3721 cgccctcgcc gggcgtgaag aaatgcgtgc cgaactggcg atcggactgc agggcctggc
     3781 tggccagcat gaccgacggc atcgcgaaca tcatcatgaa ggcggtgacc agctgcgccc
     3841 atacgaacag gggaatgcgg tccagccgca tgcccggcgc gcgcgtcacc atgaactggg
     3901 tgacgacctc cgccgccacg cacaacgcgg cgacttcggt gaagttgacc atctgcgacc
     3961 agatgtcgct gcggtggccg gcggagtagt cggacgcgga cagcggcacg taggccgtcc
     4021 agccggcttc ggggccggcg tcgagcgcga aggcgacgaa gatggtgagt ccgccgaaca
     4081 ggtagatcca gtagccgaag gcattgaggc gcgggaacga gatcgcgcgc gcgccgacca
     4141 tcagcgggac caggtacgcg cccatcgcgg tcatgacggg cacggcgaac aggaacatca
     4201 tcaccgaccc gtgcatcgag aagacctggt tgtagcggtc ggggctcagc aggtggttct
     4261 cgggcagcgc gagctgcgtg cgcatgacca gcgccaacgc gccggccagt gcgaagaaca
     4321 cgatcgccgt gacgaggtag cgacgcccga cccgcttgtg gtcggtggtg gcgagccagc
     4381 cgaccagccc gggcttgtcg ccccaggtgc gcgcgagttg cgcgtcgatg ttcgcgtcgc
     4441 gcgcgctcat ctcaggccct cgaggtagtc cgtcaggtcc gacacttcct gcggttgcag
     4501 gcgcggatcg ggcatgttgg tcccgggttt gtgcgcctgc ggatcgctga gccacgccgc
     4561 catgtgcgcc cggtcattgg gcaatgcgcc ggcggcgagc aaggggcggc tcgcgatgtg
     4621 ggtgagatcc ggtccggcgt gcgaatccgc gctggtgccg gcgatcgcgt ggcacatcgc
     4681 gcacggcccc gactcgaaca actgcttgcc acgttcggcg gacggcgatg cgggcgccgc
     4741 ccccggcgca cgctgcgcgt ccagccacgt ggcgaacgcc gtcggcgatt ccaccgtcac
     4801 cggcagcacc atgtgcgcgt gctgcaggcc gcagaactcg gcgcactggc ccagatagcg
     4861 gccgaccgcg cgcggcgtca gcgccagctc ggtggtacgg cccgggatca gatcctgctt
     4921 gccgttgagc gcgggaatcc acaggctgtg gatcacgtcg ccggacagca gctcgatgcg
     4981 tgtcatgcgc ccgagcggca ggtgcagttc gttggcggtg gcgacctgtc gcgacggatc
     5041 gggatcgagg tattcgaccg accaccacca ttgcttgctg gtgatgcgaa cgcgcagcgc
     5101 gccgggcgcg tgcgccaggc ggtggcggtc ctgcacgaag ctcaaggcgg tataggccgt
     5161 cagcaccgcc gcgatgaaga tggtccagcc aagcagcgcg cgcgtccagt tgcgcgcgtg
     5221 gcgcgcctgc gactcgggcg tctcgacgga cgcggcgcgg cgccgccaca gcgcccacgc
     5281 cagcgcggcg agcaccgcga catagatggc gacgttcggc cagaacatgg cctgccacac
     5341 cgtggcgatg gcctgcgcct ggtcggcggc cggtgcgagc gcagtcagcc tcaccggccg
     5401 ggttccgtgg tcttcggctt gagcctgggc aggcgcgagg tgggcggcgt ggccgccatg
     5461 ccctggggcg cgcctcccgc gacatatttc ggcgcgttgc cggacaaggt gcggatgtag
     5521 gcggagatct gccagatctg gtcgtccggg atcttgccgc ggaacgaggg catgccgttc
     5581 ggccggccct gggcgatcga cgcgtggatc tgttcgatgc tgccgccgta gcgccactcc
     5641 gcgtccatca gcgcggggcc gatcgcgccg ccgccggcg
//
LOCUS       DATIQC010000369         9884 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_695597, whole genome shotgun sequence.
ACCESSION   DATIQC010000369 DATIQC010000000
VERSION     DATIQC010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9884
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_695597"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VLM17_07875"
     CDS             <1..194
                     /locus_tag="VLM17_07875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65500.1"
                     /translation="RRAAGQRAGALAAPLHAAAYWLKNYLLRGGFLDGPRARRYHALH
                     TRYVFRKYRLLRVANAGNA"
     gene            215..868
                     /locus_tag="VLM17_07880"
     CDS             215..868
                     /locus_tag="VLM17_07880"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HSR65501.1"
                     /translation="MPLPDRHLDLGCGKFPRNPYARGTLCGVDIRPLQASDTFDYRVA
                     NLSLQPIPWEDGSFGSVSAFDFIEHVPRVLADAATGTRFPFIELMNEVWRVLAPGGLF
                     YALTPAYPYAAAFTDPTHVNVITAQTHDYFCGESPMGRMYGFGGRFEARRVHWTHPGD
                     AYGATPGSPDNRRARTGAKRVAEGLRNFARRLRGQDVAEADGKVYLLWELEARKRAP"
     gene            865..1887
                     /locus_tag="VLM17_07885"
     CDS             865..1887
                     /locus_tag="VLM17_07885"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR65502.1"
                     /translation="MTTATPAPASAADIPARPRSVTVLVIAYRMRDTIAQAITSVAAQ
                     TMPCEVIVSDDSSGDGTLDAAQAAVDALPAEARARFRVRSTGSNVGLCEHLNELAAVA
                     TGDVLVFQAGDDIAYPDRVARLVREFELHDAAMVVGSCVDDIDGNGRLLAPRVRGLPE
                     VVDQQWFLRRGKLQTILGASMAVRREVLASLPPLRGRVEDNMLSLRGALLGECRCIQQ
                     PLLGYRRHDHNLNDWMFDRSSRGYQTYERRNRRVLAMYRDIADDQQRCLEALPQMPAR
                     RRHLARQLADMYRLEAEMREVVLDQPRRNWLGPLARGLCHPGLRRKSAERALKLLLPR
                     RWFGRG"
     gene            complement(1884..2837)
                     /locus_tag="VLM17_07890"
     CDS             complement(1884..2837)
                     /locus_tag="VLM17_07890"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR65503.1"
                     /translation="MAAAGAGDGWLQAMSAAPAPLVTVALCSWNGARFLPEQLASVLA
                     QEDVAFEVVAVDDASDDDSVRILQRFAERDARVRVVVHAGNRGATASFEHAMSLARGE
                     FIAPCDQDDIWHPRKLARLVQAIGRRDLAYCDSDLLDADGGRLGRTLSSGRAMFAGEA
                     CLPLLFRNSVSGHAMLVRRSLFEAAHPFPAGVFHDWWLALWAANRAGVVYVDEPLVGF
                     RRHGGSASAVECPTRRRDDWLGMRRALIHAFAQRVDGPSAAAVRALDQALGGVAGKPD
                     LRALARWLWRNRDAIDTRSRAAGRLALQVKLLRSAWRAGAG"
     gene            complement(2795..4471)
                     /locus_tag="VLM17_07895"
     CDS             complement(2795..4471)
                     /locus_tag="VLM17_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HSR65504.1"
                     /translation="MRFPARPRDTWLFWLVALLVLAAGLGLRDPWPADEPRFALVAKQ
                     MVESGNWLFPHRGTELYSDKPPMLMWLQAAGFELFRDWRVAFLLPSLLAALGTLWCVV
                     DLGRRLWTRRVGLYAGWLLLCALQFTYQAKKAQIDPLVTFWITLANYGLLRFLLVTRE
                     EPRPDWRLWTLGWFAAGLGTITKGVGVLALAMLLPAMVALLRGWRGVRLPRDPRLLLG
                     PLAFAAAAAIWLAPMLAVALARRDPAYAAYVQDILFHQTAGRYAKSWDHPQPVWYQLG
                     VMASMWIPPLLALPWAIPAWARRLRRRDARYLLPLAWWLLIVVFFSIPHGKRDVYIMP
                     ALPMACLLLAPLLPGLLRKRGVQWLAFAFGIGLALAALGGAAAMLTGKAGFARQLVVE
                     RGLDPAQARAGGWLLLAIATWAIGCALWFGRRRAALALAWMLAGLWVLYGVVAYPLLN
                     DSSSARGLMQQAGARIGPDAELGLVAWKEQNLLMADRPAATFGFVTPWPEQFARGVAW
                     QAQAPQRRWLMVQDAALPACVDRARAAPVGLANRRAWWLLPAPATAGCRR"
     gene            complement(4611..5906)
                     /gene="rsmB"
                     /locus_tag="VLM17_07900"
     CDS             complement(4611..5906)
                     /gene="rsmB"
                     /locus_tag="VLM17_07900"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006453165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HSR65505.1"
                     /translation="MPATPGVAVRVLAARTLDAVLSHGHSLRAELAQALPQLPDPRDR
                     ALLEAIVFAALRARARFDAALAAWMDKPPSSRDGELRALLFAGFAQLALQLPAHAALD
                     ATVAAARALGRTHQAGLVNALLRRALREPLPAGDPAGAWPEWLRDRLRADWPQAATAI
                     FDASAQPAPTWLRINRHRMAPAAYLGRLRDAGIAAEASALLPEGLRIDGTLPVADLPG
                     FAQGDVSVQDGSAQLVADALAPPRGARVLDACAAPGGKAAHLLERDASLRLLALDADA
                     RRLRRIGDTLARLDLAAELRCADAAQASSWWDGEPFDAILLDAPCSATGVARRQPDVL
                     LHRRPSDIDALVRLQARLLDGLWQTLAPGGALLYATCSLLRAENDAQVAAFLARTPDA
                     VLAPLDDRYGHDTGHGRQRFPGEDGMDGFFYARLAKRGA"
     gene            complement(6113..7033)
                     /gene="fmt"
                     /locus_tag="VLM17_07905"
     CDS             complement(6113..7033)
                     /gene="fmt"
                     /locus_tag="VLM17_07905"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HSR65506.1"
                     /translation="MRIVFAGTPEFAVPSLRAAAQRGEVVAVYTQPDRPAGRGRGLTP
                     SPVKLEAARRGIPVLQPETLKGGLSRDALRALKPDLMVVVAYGLLLPQKILDIPRFGC
                     WNVHASLLPRWRGAAPIQRAIEAGDVDTGVCLMQMEKGLDTGPVLLSQRIAIGPEETA
                     GQLHDRLAGLGAQVLADGLGLLRAGMRPVPQPQAADGVAYAHKLEKAEARLDWSQPAD
                     ALARKVRAFNPWPVAEAELAGERLRIHGAVALDEMHAAAPGTLLRAGRDGLDIACGRG
                     VLRVRVLQREGGKAITAADYLNARRELARA"
     gene            complement(7141..7656)
                     /gene="def"
                     /locus_tag="VLM17_07910"
     CDS             complement(7141..7656)
                     /gene="def"
                     /locus_tag="VLM17_07910"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HSR65507.1"
                     /translation="MALLPILEFPDPRLRTVAAPVDAAWLAEPATQQLIDDMFETMYA
                     APGIGLAASQVDVHRRFMVIDVTEEHDRPLVFVNPTISARAGEQVYQEGCLSVPGIYA
                     DVTRADQITVQALDRHGQPFELSVDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRK
                     KLAKAKRQAAA"
     gene            7815..8984
                     /locus_tag="VLM17_07915"
     CDS             7815..8984
                     /locus_tag="VLM17_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005927359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="HSR65508.1"
                     /translation="MAAKLKHLSQGLRTVVAVALLTVTAYAAAVEMRGDHPDTYVVKR
                     GDTLWDIAGRFLQKPWLWPEIWQANPQVKNPHLIYPGDVLSLAYLDRVTVKEGPRTEA
                     PINAVPLAEVEPFLKDLRVVDSFDQLPYVVGLEEDRLRAGEGQVAYIKGLAGAQPGTR
                     YLVVRPTVRYTRLDRSGACCDLFHTNDLDARGRRTVDFQQFWTDAVTPDNGHELLGFE
                     LMRQGAGTLTRGEVGGIQASTLLLDAEGREVRVGDRVIPVDAHSYDLQFFPHPPKQQL
                     EYGRAKVLAVADNYSAGGTRDVVALSVGAREGVDNGTVFSIWRVGSKVVDKVAVDPNR
                     TEDTVGNADRVRLPDEFAGHVMVFRTFDKVSYGLVMDTIKPVRVGYELKHPDAPY"
     gene            9138..>9884
                     /gene="dprA"
                     /locus_tag="VLM17_07920"
     CDS             9138..>9884
                     /gene="dprA"
                     /locus_tag="VLM17_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020851583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HSR65509.1"
                     /translation="MHDDSEALLRLVVAGGPAAPRRGLLDAHRGPAAAFAAGAGAWRA
                     AGCREQQVARLRQPDEAVLERCRTWLAQPGHHLVGCHDPDYPPLLRRTANPPLALFVA
                     GDPGRLWHPAIAVVGSRAATAGGLDNARDFAGALAAAGLAIASGLAAGIDTAAHQAAL
                     ARDGLTVAVLGTGPDVPYPRANRDLHAWIAATGAVVSEHPPGTGPLREHFPSRNRILA
                     GLSLGTLVIEAALRSGALITAREAAEAGREV"
BASE COUNT         1438 a         3682 c         3539 g         1225 t
ORIGIN      
        1 agcggcgcgc cgccggccag cgcgccggcg cgctggccgc gccgctgcac gccgccgcct
       61 actggctgaa gaactacctg ctgcgcggcg gcttcctcga cggtccccgg gcgcgtcgct
      121 accatgcgct gcacacccgg tacgttttcc ggaaataccg cctcctgcgc gtggcgaacg
      181 cgggaaacgc gtgatttccc cgtcgagcga tcccatgccc ctgccagacc gccacctcga
      241 cctcggctgc ggcaagttcc cgcgcaatcc ctacgcgcgc ggcacgttgt gcggggtcga
      301 catccgcccg ctgcaggcca gcgacacctt cgactaccgc gtcgccaacc tcagcctgca
      361 gcccatcccg tgggaagacg gcagcttcgg ttcggtgtcg gcgttcgact tcatcgagca
      421 cgtgccgcgc gtgctcgccg acgccgcgac cggcacgcgc tttcccttca tcgagctgat
      481 gaacgaggtc tggcgcgtgc tggcgccggg cggcctgttc tacgcgctga cgccggcgta
      541 tccgtacgcg gccgcgttca ccgaccccac ccacgtcaac gtgatcaccg cgcagaccca
      601 cgattacttc tgcggcgagt cgccgatggg acgcatgtac ggcttcggcg gccgcttcga
      661 ggcgcgccgc gtgcactgga cgcacccggg cgatgcctac ggcgcgacgc ccggctcgcc
      721 ggacaaccgc agggcgcgca ccggcgcgaa gcgcgtcgcc gaaggcctgc gcaacttcgc
      781 gcgccgcctg cgcggccagg acgtggcgga agccgacggc aaggtgtacc tgctgtggga
      841 gctggaagcg cggaaacgag ccccatgacg actgccactc cggcccccgc cagcgctgcg
      901 gacatcccgg cccggccgcg gtcggtgacc gtgctcgtca tcgcctaccg catgcgcgac
      961 accatcgccc aggccatcac ctcggtcgcc gcccagacga tgccgtgcga ggtcatcgtg
     1021 tccgacgaca gctccggcga cggcacgctg gacgccgcgc aggccgccgt cgacgccctg
     1081 ccggcggagg caagggcccg gttccgggtc cgcagtaccg gctcgaacgt cgggttgtgc
     1141 gaacacctca acgagctggc ggcggtggcg acgggcgatg tcctggtgtt ccaggccggc
     1201 gacgacatcg cctacccgga ccgcgtcgcc cgcctcgtcc gcgagttcga gctgcacgac
     1261 gccgcgatgg tcgtcggctc gtgtgtcgac gacatcgacg gcaacggtcg cctgctcgcg
     1321 ccgcgggtcc ggggcctgcc cgaggtggtg gaccagcaat ggttcctgcg ccgcggaaag
     1381 ctgcagacga tcctcggcgc gtcgatggcc gtgcgccgcg aggtgctggc ttcgctccca
     1441 ccgctgcgcg gacgggtgga ggacaacatg ctctcgctgc gtggcgccct gctgggcgag
     1501 tgtcgctgca tccagcagcc gctgctcgga tatcgccgcc acgaccacaa cttgaacgac
     1561 tggatgttcg accgcagcag ccgcggttac cagacctacg aacgccgcaa ccgccgggtg
     1621 ctggcgatgt accgcgacat cgcggacgac cagcagcggt gcctggaagc gctgccgcaa
     1681 atgcctgcgc gccgccggca tctcgcccgg cagctggcgg acatgtaccg gctggaagcg
     1741 gagatgcgcg aggtcgtgct ggaccagccg cggcgcaact ggctgggacc gctggcccgc
     1801 ggcctgtgcc atccggggct gcgccgcaag agtgccgaac gcgcgctcaa gctgctgctg
     1861 ccgcgccgct ggttcggccg cggctagccc gcgccggccc gccacgcgct gcgcagcagc
     1921 ttcacctgca acgcaaggcg gcccgcggcc cgcgaccggg tgtcgatcgc gtcgcggttg
     1981 cgccacagcc agcgcgccag ggcgcgcagg tccggtttgc ccgccacgcc gcccagcgcc
     2041 tggtccagcg cacggaccgc agcggcgctc ggaccatcga cgcgctgcgc gaaggcgtgg
     2101 atcagcgcgc gacgcatgcc cagccagtcg tcgcggcgcc gggtcgggca ttccaccgcc
     2161 gaagcgctgc caccgtgccg gcgaaagccg acgaggggct cgtccacgta caccacgccc
     2221 gcgcggttcg ccgcccacag cgccagccac cagtcgtgga agacgccggc gggaaaagga
     2281 tgcgccgctt cgaacaacga acgccgtacc agcatcgcgt ggcccgagac cgaattccgg
     2341 aacagcaacg gaagacaggc ctctcccgcg aacatggccc ggccggacga cagcgtcctg
     2401 cccagcctgc cgccgtccgc gtcgagcagg tccgaatcgc agtaggcgag gtcgcgccgg
     2461 ccgatggcct gcaccagccg cgccagcttg cgcggatgcc agatgtcatc ctggtcgcag
     2521 ggagcgatga actcgccgcg cgccagcgac atggcgtgtt cgaagctggc ggtcgcgccg
     2581 cggttgccgg catggacgac gacccgcacg cgcgcatccc gctccgcgaa gcgttgcagg
     2641 atccggacgc tgtcgtcgtc ggacgcatcg tcgaccgcga cgacctcgaa cgcgacgtct
     2701 tcctgcgcca gcaccgaggc cagctgctcg gggaggaagc gcgcaccgtt ccagctgcac
     2761 agggcgaccg tgaccagcgg agccggcgcg gcgctcatcg cctgcagcca gccgtcgccg
     2821 gcgccggcag cagccaccac gcccgccggt tggccaggcc gaccggtgcg gcgcgcgcgc
     2881 ggtcgacgca ggccggcagc gcggcatcct gcaccatcag ccagcggcgt tgcggggcct
     2941 gcgcctgcca cgcgacgccg cgcgcgaact gctcgggcca gggagtgacg aagccgaagg
     3001 tcgccgccgg ccgatccgcc atcagcaggt tctgttcctt ccacgcgacc agcccgagtt
     3061 ccgcgtcggg cccgatgcgt gcgcccgcct gctgcatcag cccgcgcgcc gaactcgagt
     3121 cgttgagcag cggataggcg accacgccgt acagcaccca cagcccggcg agcatccatg
     3181 ccagcgccag tgcggcgcgg cgccgcccga accacagcgc gcagccgatg gcccacgtgg
     3241 cgatcgccag caggagccag ccgcccgcgc gcgcctgcgc cggatcgagc ccgcgttcga
     3301 ccaccagctg gcgggcgaaa ccggccttgc cggtcagcat cgcggccgcg ccgccgagcg
     3361 ccgccagcgc gagcccgatg ccgaacgcga acgccagcca ctgcacgccg cgcttgcgca
     3421 gcaggccggg cagcagcggc gcgagcagca ggcaggccat cggcagcgcc ggcatgatgt
     3481 agacgtcgcg cttgccgtgc gggatcgaga agaacacgac gatcaacagc caccatgcga
     3541 gcggcagcag gtagcgcgcg tcgcgccgcc gcagccggcg tgcccatgcc gggatcgccc
     3601 agggcagcgc gaggagcggc gggatccaca tgctcgccat cacgccgagc tggtaccaga
     3661 ccggttgcgg atggtcccag gatttcgcgt agcggcccgc ggtctggtgg aacaggatgt
     3721 cctggacgta ggcggcgtac gcgggatcgc gccgcgccag cgcgacggcg agcatcggcg
     3781 cgagccagat cgcggcggcg gcggcgaacg cgagcggacc gagcagcagg cgcggatcgc
     3841 gcggcaggcg cacgccgcgc cagccgcgca gcagcgcgac catcgccggc agcagcatcg
     3901 ccagagcgag cacgccgacg cccttggtga tggtgccgag cccggcggcg aaccagccga
     3961 gcgtccacag ccgccagtcc ggccgcggct cctcgcgcgt caccagcagg aagcgcagca
     4021 ggccgtagtt ggcgagcgtg atccagaagg tcaccagcgg atcgatctgc gccttcttcg
     4081 cctggtaggt gaactgcagc gcgcacagca gcagccagcc cgcatacagg cccacgcgcc
     4141 gggtccacag ccgccggccg aggtcgacca cgcaccacag cgtgccgagc gcggccagca
     4201 gcgacggcag caggaaggcg acgcgccagt cgcggaacag ttcgaagccg gccgcctgca
     4261 gccacatcag catcggcggc ttgtccgagt agagttcggt gccgcgatgc gggaacagcc
     4321 agttgccgct ctcgaccatc tgcttggcca ccagcgcgaa acgcggctcg tcggccggcc
     4381 acggatcgcg caggccgagg cccgcggcga gcaccagcag ggcgaccagc cagaacaacc
     4441 aggtatcgcg gggacgggcg gggaagcgca tgcgggcgcc gaacgatgga gacgggaaac
     4501 cttagacgaa acgacgccgg cgggcgatga ggcggtgcgg cggcgcgggt gcgcaacgac
     4561 ctgatcgctc ccgcgggacg ccgcccggga acctgcagct gccgtcgttc ctacgccccg
     4621 cgtttcgcga ggcgcgcata gaagaacccg tccatgccgt cctcgcccgg gaagcgctgg
     4681 cgaccgtggc cggtgtcgtg gccgtagcgg tcatccagcg gcgccagcac cgcgtccggc
     4741 gtgcgggcga ggaaggcggc aacctgcgcg tcgttctccg cgcgcagcag cgagcaggtc
     4801 gcgtacagca gcgcgccgcc cggcgccaat gtctgccaca acccgtccag caggcgtgcc
     4861 tgcaaccgca ccagcgcatc gatgtcggag gggcggcggt gcagcagcac gtcgggctgg
     4921 cggcgcgcga cgccggtggc gctgcacggc gcgtcgagca ggatggcgtc gaacggctcg
     4981 ccgtcccacc acgacgacgc ctgcgcagcg tcggcacagc gcagttcggc cgccaggtcc
     5041 aggcgcgcga gcgtgtcgcc gatgcggcgc agccgccgcg cgtcggcatc cagtgccagc
     5101 aggcgcagcg acgcatcgcg ttcgagcagg tgcgcagcct tgccgccggg cgcggcgcag
     5161 gcgtcgagca cgcgcgcgcc gcgcggcggc gccagcgcgt cggcgaccag ctgcgcgctg
     5221 ccgtcctgca ccgagacgtc gccctgggcg aaacccggca ggtcggcgac cggcagcgtg
     5281 ccgtcgatgc gcaggccctc gggcagcagc gcgcttgcct ccgcggcaat gccggcatcg
     5341 cgcaatcgcc cgaggtacgc cgcgggcgcc atgcgatgcc ggttgatccg caaccaggtc
     5401 ggcgcgggct gcgcgctcgc gtcgaagatc gcggtggcgg cctgcggcca gtcggcgcgc
     5461 aggcgatcgc gcagccactc cggccaggca cccgcgggat cgccggcggg cagcggctcg
     5521 cgcagcgcgc gccgcagcag cgcgttgacc agtcccgcct ggtgggtgcg ccccagtgcg
     5581 cgcgccgcag cgacggtggc gtcgagcgcg gcgtgcgcgg gcagctgcag cgcgagctgg
     5641 gcgaagcccg cgaaaagcag ggcgcgcaac tcgccatcgc gcgacgacgg gggcttgtcc
     5701 atccaagcgg ccagcgcggc gtcgaagcgc gcgcgcgcgc gcagggcggc gaacacgatc
     5761 gcctcgagca gcgcgcggtc gcgcggatcg ggcagttgcg gcaacgcctg cgccagttcg
     5821 gcgcggagcg aatggccgtg ggacaggacc gcatcgagcg tgcgcgcggc gagcacgcgg
     5881 acggcgacgc cgggcgtggc cggcaatgcc ggcgccgcgc gcggtgcggg cggtggcgcg
     5941 gcggccgtcc gcctcggtcc gcgcggcttg tcccggtggc ccttctgctg gcccggcttc
     6001 ggcctggtcg gcttcgccgc cttcgcaggc ggagtcgtcc ctttagcggc gtcggcaccg
     6061 tcgcgcatcg cgcgcggcgc cgtgcgccgg ggccgctgct cgccggggcc gctcatgcgc
     6121 gcgccagctc gcggcgcgcg ttgaggtagt cggcggcggt gatcgccttg ccgccctcgc
     6181 gctgcagcac gcgcacgcgc agcacgccac ggccgcaggc gatgtcgagc ccgtcgcggc
     6241 ccgcgcgcag caacgtgccc ggcgcggccg cgtgcatttc gtcgagcgcg acggcgccgt
     6301 ggatgcgcag ccgctcgccg gcgagttcgg cttccgcgac cggccacgga ttgaacgcac
     6361 gcaccttgcg cgcgagcgcg tccgccggct gcgaccagtc gagcctggct tcggccttct
     6421 ccagcttgtg cgcataggcc acgccatcgg ctgcctgcgg ttgcggcacc gggcgcatgc
     6481 ccgcgcgcaa caggccgagg ccgtcggcaa gcacctgcgc accgagcccg gcgaggcggt
     6541 cgtgcaactg gcccgccgtc tcctccggcc cgatcgcgat gcgctgcgac agcagcaccg
     6601 ggccggtgtc caggcctttc tccatctgca tcaggcatac gccggtgtcg acgtcgccgg
     6661 cctcgatcgc gcgctggatc ggcgccgcgc cgcgccagcg cggcagcagc gaggcatgca
     6721 cgttccagca gccgaagcgc gggatgtcga ggatcttctg cggcaacagc aggccgtagg
     6781 cgaccaccac catcaggtcg ggcttgagtg cgcgcagggc gtcgcgcgaa agcccgccct
     6841 tcagcgtttc cggctgcagc accggaatgc cgcgccgcgc ggcctcgagc ttgaccggcg
     6901 acggcgtcag cccgcgcccg cgcccggccg ggcggtccgg ctgggtgtag acggccacca
     6961 cctcgccgcg ctgggcggcg gcgcgcagcg acggcacggc gaattcggga gtgccggcga
     7021 aaacgattct catcggaacg gattccgtgc gttcgggggg cgctggcggt tcggacgccg
     7081 ccagcgcgga ggggcgtggt gcgacgttcg acgcgcgcga cccggcgacc gcgcgcgcgc
     7141 ctacgcggcg gcctgccgct tcgccttcgc cagcttcttg cgcaccatct cgcgcttgag
     7201 cggcgagagg taatcgacga acagcttgcc gtcgaggtgg tccatctcat gctggacgca
     7261 caccgccagc aggccgtcga cgctgagctc gaacggctgg ccgtggcggt cgagcgcctg
     7321 cacggtgatc tggtcggcac gggtcacgtc ggcatagatg ccgggcaccg acaggcagcc
     7381 ttcctggtag acctgctcgc cggcacgcgc gctgatcgtc gggttgacga acaccagcgg
     7441 ccggtcgtgc tcctcggtca cgtcaatgac catgaagcgg cggtgcacgt cgacctggct
     7501 cgcggccagg ccgatgccag gcgcggcgta catggtctcg aacatgtcgt cgatcagctg
     7561 ctgcgtggcc ggctcggcca gccacgcggc atcgaccggc gcggcgacgg tgcgcaggcg
     7621 cgggtcgggg aattcgagga tgggcaacag ggccatggcg gtcgaaatgg gggcggcggt
     7681 cacatccgca agcggatggc gcacgcggcg acggatggat gctccgattg taccgctccc
     7741 ggcttgccaa gacgcgcggc ttgtgggcta tagtggcccg gctgcaaggg gaaatctcca
     7801 aggggagcgg gtagatggcc gccaagctta agcacctttc tcaagggctg cgcacggttg
     7861 ttgccgtggc gctgctgacc gtcacggcct atgcggccgc cgtcgaaatg cgcggcgacc
     7921 atccggacac ctacgtcgtc aagcgtggcg acacgctgtg ggacatcgcc ggccgcttcc
     7981 tgcagaagcc ttggctgtgg ccggaaatct ggcaggccaa cccgcaggtc aagaacccgc
     8041 acctgatcta cccgggcgac gtgctgtcgc tcgcctacct cgaccgcgtc accgtcaagg
     8101 aagggccacg caccgaggcg ccgatcaacg ccgttccgct ggccgaggtc gagcccttcc
     8161 tgaaggacct gcgcgtggtc gacagcttcg accagctgcc ctacgtggtc ggcctcgagg
     8221 aagaccgcct gcgcgccggc gagggccagg tcgcctacat caaggggctt gccggcgccc
     8281 agccgggcac ccgctacctc gtcgtccgcc ccaccgtgcg ctacacgcgc ctggaccgct
     8341 ccggcgcctg ctgcgacctc ttccacacca acgacctcga cgcgcgcggc cgccgcaccg
     8401 tcgacttcca gcagttctgg accgacgcgg tcacgcccga caacggccat gaactgctcg
     8461 gtttcgagct gatgcgccag ggcgccggca cgctcacccg tggcgaggtc ggcggcatcc
     8521 aggccagcac cctgctgctc gatgccgaag gccgcgaggt gcgcgtgggc gaccgcgtga
     8581 tcccggtcga cgcgcacagc tacgacctgc agttcttccc gcatccgccc aagcagcaac
     8641 tggaatacgg tcgcgcgaag gtgcttgcgg tcgccgacaa ctacagcgcc ggcggcacgc
     8701 gcgacgtggt ggcgctgtcg gtcggcgcgc gcgaaggcgt cgacaacggc acggtgttct
     8761 cgatctggcg cgtgggcagc aaggtggtgg acaaggtcgc ggtcgatccc aaccgcaccg
     8821 aggacaccgt cggcaacgcc gaccgcgtgc gcctgcccga cgaattcgcc ggccacgtga
     8881 tggtcttccg caccttcgac aaggtcagct acggcctggt catggacacc atcaagccgg
     8941 tgcgcgtggg ctacgaactc aagcatcccg acgcgcccta ctgaatcacc tggcagcatg
     9001 tccgacggcg ccgcaaggcg ccgtcgtcgt ttcagaatcg cggcgagact gcgcggggcg
     9061 cgttttcagg aaactcctac ggggcgggcg gcggttgccc ggctgccccg ccggcgcgac
     9121 ccacctagcc tgcgcggatg cacgatgaca gcgaagccct gctgcgcctg gtcgtcgccg
     9181 gcggtcccgc ggcaccgcgg cgcggactgc tcgacgccca ccggggaccg gccgccgcct
     9241 tcgccgcggg cgccggcgcc tggcgcgcgg ccgggtgccg cgagcagcag gtcgcccggc
     9301 tgcggcaacc cgacgaagca gtgctcgagc gctgccggac ctggctcgcg cagccaggac
     9361 accacctggt cggctgtcac gatcccgact acccgccgct cctgcgccgc accgccaatc
     9421 cgccgctggc gctgttcgtc gccggcgatc cgggtcgcct ctggcacccg gcgatcgccg
     9481 tggtcggcag ccgcgccgcg accgcgggcg gcctcgacaa tgcgcgcgac ttcgccggcg
     9541 cgctggccgc ggccggcctc gccattgcca gcggactcgc cgccggcatc gacaccgccg
     9601 cgcaccaggc cgcgctcgcc cgcgacgggc tgaccgtcgc ggtgctcggc accgggccgg
     9661 acgtgcccta cccgcgcgcc aaccgcgacc tgcatgcatg gatcgccgcg accggcgcgg
     9721 tggtcagcga gcacccgccc ggcaccgggc cgctgcgcga gcacttcccg agccgcaacc
     9781 gcatcctcgc gggactgtcg ctgggcaccc tggtgatcga ggccgcgctg cgctccggcg
     9841 cgctgatcac cgcgcgcgag gccgccgagg ccggccgcga ggtg
//
LOCUS       DATIQC010000370         2354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_518624, whole genome shotgun sequence.
ACCESSION   DATIQC010000370 DATIQC010000000
VERSION     DATIQC010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_518624"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            483..>2354
                     /locus_tag="VLM17_07925"
     CDS             483..>2354
                     /locus_tag="VLM17_07925"
                     /EC_number="1.11.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HSR65510.1"
                     /translation="MNAKQHRNALTCTWVIAALSAGSLLAAAGDIITTPDQSDGVQDE
                     FTFHPDIPFDSLKNVPIWNETEQLLDNPYAIGNCPADANGQPIGGNAQGFAARCSTIQ
                     RRRSFLPAGCTYDPSTGLPPCNDALLRPFLVHPLNYNAFTGEQMRLLQPAFPGLATFL
                     DPVTGANLGPISAGSTRIHNGDDPALDFNSPLVNDGGDAGEPTGYADAAVCGNDTVSN
                     WVEARPACSGNTGKLLDPTPLNNGQPRGIVASLRKPTIGQDYAVNSEGALAGRAAALA
                     PSNPDDYIRDRRMAAVLGKALFWDMQLGSDGVQACASCHFSAGADTRTRDQLNPDHLG
                     GDTQLEVFRNRHLSTAPTAADQNANRDLVRTDFPTHRLINQAIAGEPLLNPGNVSRDA
                     NDVVSSMGVRLRRFNDIPTPGSNAFGTANSGVRALLPDLGTAITDPIPIFQGLRRVEP
                     RNTPTIINAAFNYDNFWDGRARHDFNGGSVFGASDPQPHVMVDQGGTLVRTRQVIRFA
                     SVASQMVGPAVSEFEMSFRGRSWPKIGKKLLQGDGSPSLPNVTPLALQLVSTSDSVLG
                     PFSNQGGSQCQALGRSTAPGEPGLCLSYREIIQQAFFAGLWQNTTQHLNGAPAVCTNI
                     "
BASE COUNT          393 a          913 c          723 g          325 t
ORIGIN      
        1 ggacgccccg gcggcggacg cggtccgcgc tgaaccccgg agtgcaaacg aaggcgccga
       61 aaggcgcctt cgtcgtttct tgcgatggga gcagccgcgc cgatccgacg cggatggccg
      121 gctgcgcgga gcgcgctccc cctgggagac gaacgcaacg agaagcattc gcgcacagcg
      181 cgccggcgca ccgcacgcga gcgtcacgcc ggcgttcatg aacgacaccg tgcggcattc
      241 gcccgcacga tctgaacgcg cacgctgctg cttgcacaca tcgctgcgac agcggcaggc
      301 gcctgatgcg ttgtatcggt gcgttcgtcg gcccgcgatt tttttcgtcc tctctttttt
      361 tccgacggcg ttggtgagga tgcaggagcg aagcgcgcgc cgcgcgcgac atgacggacg
      421 ctcgaagaca agagggaggt ccgctcccct gcaagccact gcgaagcccc agggtggact
      481 cgatgaatgc caagcaacac cgtaacgccc tgacctgcac ctgggtcatc gccgcgctgt
      541 cggccggttc gctgctcgcc gcggccggcg acatcatcac gacgccggac cagtcggatg
      601 gcgtgcagga cgaattcacg ttccaccccg acatcccgtt cgactcgctc aagaacgtgc
      661 cgatctggaa cgagaccgag cagctgctcg acaatcccta tgcgatcggc aactgccccg
      721 cggacgcaaa cggccagccg atcggcggca acgcacaggg gtttgccgcg cgctgcagca
      781 ccatccagcg ccgccgttcg ttcctgccgg ccggctgcac ctacgacccg agcaccggcc
      841 tgccgccctg caacgacgcg ctgctgcgcc cgttcctcgt gcatccgctc aactacaacg
      901 cgttcaccgg cgagcagatg cggctgctgc agccggcgtt tcccggcctc gccaccttcc
      961 tcgacccggt caccggcgcc aacctcggac cgatctcggc cggttcgacg cgcatccaca
     1021 acggcgacga ccccgcgctc gacttcaaca gcccgctggt gaacgacggc ggcgacgccg
     1081 gcgagccgac cggttacgcc gacgccgccg tctgcggcaa cgacacggtt tcgaactggg
     1141 tcgaagcgcg ccccgcctgc agcggcaaca ccggcaagct gctcgatccg accccgctga
     1201 acaacggcca gccccgcggc atcgtcgcct cgctgcgcaa gccgaccatc ggccaggact
     1261 acgcagtcaa ctccgagggc gccctcgccg gccgcgccgc cgcgcttgca ccgtcgaatc
     1321 ccgacgacta catccgcgac cggcggatgg cggcggtgct cggcaaggcg ctgttctggg
     1381 acatgcagct gggcagcgac ggcgtgcagg cctgcgcgag ctgccatttc tccgcgggcg
     1441 cagatacccg cacccgcgac cagctcaatc ccgaccacct cggcggagac acccagctcg
     1501 aggtgttccg caaccggcat ctctcgaccg cgcccacggc cgccgaccag aacgccaacc
     1561 gcgacctcgt ccgcacggac ttccccaccc atcgcctgat caaccaggcg atcgccggcg
     1621 aaccgctgct caacccgggc aacgtctcgc gcgacgccaa cgacgtcgtc tcctcgatgg
     1681 gcgtgcgcct gcgccgcttc aacgacattc ccacgcccgg cagcaacgcc ttcggcacgg
     1741 ccaacagcgg cgtgcgcgcc ctgctgcccg acctcggcac cgcgatcacc gatccgatcc
     1801 cgatcttcca ggggctgcgc cgggtcgagc cgcgcaacac gcccaccatc atcaacgccg
     1861 ccttcaacta cgacaacttc tgggacggtc gcgcccgcca cgacttcaac ggcggcagcg
     1921 tgttcggcgc ctccgacccg caaccgcacg tgatggtcga ccagggcggc accctggtgc
     1981 gcacccgcca ggtgatccgc ttcgccagcg tggcctcgca gatggtcggg ccggccgtct
     2041 ccgagttcga gatgtccttc cgcggccgca gctggccgaa gatcggcaag aagctgctgc
     2101 agggcgacgg ctcgccgtcg ctgcccaacg tcacgccgct cgcgctgcag ctggtctcca
     2161 ccagcgacag cgtgctcggg ccgttctcca accagggcgg gtcccagtgc caggcgctgg
     2221 gccgcagcac cgcgccggga gagccgggcc tgtgcctgag ctaccgcgaa atcatccagc
     2281 aggcgttctt cgcgggcctc tggcagaaca ccacccagca cctcaacggc gccccggcgg
     2341 tgtgcaccaa catc
//
LOCUS       DATIQC010000371         7285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_24501, whole genome shotgun sequence.
ACCESSION   DATIQC010000371 DATIQC010000000
VERSION     DATIQC010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7285
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24501"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..767
                     /locus_tag="VLM17_07930"
     CDS             <1..767
                     /locus_tag="VLM17_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DALR domain-containing protein"
                     /protein_id="HSR65511.1"
                     /translation="RPGWHIECSAMAEAHLGQTIDIHAGGVDLQFPHHENEIAQSECA
                     HGGKLFARYWLHNGMLVFGGAKMSKSLGNIERIHDLLQKHPHEALRYALLSAHYRQPL
                     DWSNALIEQSVRTLDRLYGTLRDLDDVEASPRIPQAIEDALDDDLNTPQALAEIARIA
                     GDARKAGAPEEKRRLKAELLGAGLVLGLLQQPAAAWFGRGTVAGEDVRIQALIDERGA
                     AKKARDFARADAIREQLAAEGVVLEDTPQGVRWKRA"
     gene            814..1251
                     /locus_tag="VLM17_07935"
     CDS             814..1251
                     /locus_tag="VLM17_07935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HSR65512.1"
                     /translation="MNDTAFPLEPTAAAAQQAIADEFAFFGDWSERYQYLIDLGRKLP
                     PLPDACKTEEHRLHGCQSMVWITSEGAAGRLDFRAVSDSAIVSGLIYLALRVYSGRSA
                     AEILATEPDFIASIGLARHLSPTRSNGLAALLAFIRDRAREAA"
     gene            1248..2483
                     /locus_tag="VLM17_07940"
     CDS             1248..2483
                     /locus_tag="VLM17_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR65513.1"
                     /translation="MNEDAPPASPLRNRAFVELLAFRILAILSYQVVAVTVGWHIYEL
                     THDPLSLGLVGLAEVIPYFCVAPFAGYLVDHLPRRQLGAIACAGLAATALLLTAIATG
                     RAGVPGHLLIYAAIALTGTVRSFLSPIYNALFARVLPRAQFGRGAGVGSVVFQLGLVL
                     GPALGGLLVGSAGKAAAYGVAAVLAVAAGLALLAMRVEDARPDGERAPIFASIGEGLR
                     FVFGHQVLLGALALDMFAVLFGGAVALLPAFIKDILHAGPEALGVLRAAPAAGAVLVG
                     AWMARRPPDRGAGRLLLAAVAGFGLCIIGFALSRQLWLSAGLLFASGLCDGVSVVLRS
                     TILQLATPDSMRGRVSAINDIFIGSSNELGAFESGLAAKLLGLVPSVVFGGCMTLAVV
                     AGTARLAPKLRRLDLRQLH"
     gene            2536..3174
                     /locus_tag="VLM17_07945"
     CDS             2536..3174
                     /locus_tag="VLM17_07945"
                     /inference="COORDINATES: protein motif:HMM:NF018595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HSR65514.1"
                     /translation="MAVETARGQRITIHFDPARCVHSRNCVLGNPKVFVPNAEGEWLH
                     PDAAPPDEVEAIVRSCPSGALTFERADVPGEQAPDVNTVRVRENGPLAFHAECTVAGA
                     VQPFRTTLCRCGLSHNKPFCDNRHREGGFVATGEPAERPSQPLAARNGMLAVEPTRDG
                     PLHVTGNLEVVSGTGHTVNRVTETWLCRCGRSNNKPYCDGSHRKAGFRADGA"
     gene            complement(3244..4284)
                     /gene="dksA"
                     /locus_tag="VLM17_07950"
     CDS             complement(3244..4284)
                     /gene="dksA"
                     /locus_tag="VLM17_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HSR65515.1"
                     /translation="MAAKKPAKKAAKAAPKKSSAPVKKTVAKKPVAAKKAAGRPAAKK
                     AVVAKKPAPARKAAPARKPVAKVPSKAAPAKAPAKAAKPVAKAPAKAAAPARPAPVAK
                     KPAPAARPAARPAAKAIGREALAGPVKVETPKQPQSTHAADHAPKPVAKPVAKPVARE
                     LAQQAAPTKPVAASARPVGKVAVAVAAKPSAPASNRKIKVVPHETDEASGRPIVPKGY
                     KPSPDEEYMSPLQLEYFRQRLLQWRADLIEESKQTIENLKDEVRDVGDEAERATRETE
                     NSLELRTRDRYRKLIGKIDSTLKRVDSGEYGYSVDSGEEIGLDRLEARLTAERTIDEQ
                     ERWEHLQKQIGD"
     gene            4392..4610
                     /gene="yidD"
                     /locus_tag="VLM17_07955"
     CDS             4392..4610
                     /gene="yidD"
                     /locus_tag="VLM17_07955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019182827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HSR65516.1"
                     /translation="MIDRLLIALLRGYKRWLSPLLGPRCRFVPTCSEYAMEAIARFGA
                     FKGGWLALRRIGRCHPLHPGGHDPVPPR"
     gene            4625..5971
                     /locus_tag="VLM17_07960"
     CDS             4625..5971
                     /locus_tag="VLM17_07960"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HSR65517.1"
                     /translation="MADTLIVNARLVNEGREFEGDLRIEHGRIAEIGSGLSARGNEVV
                     VDAAGARLLPGMVDDQVHFREPGLEYKADIATESAAAVAGGLTTFMDMPNTSPPTLDR
                     AALEDKYRRAAGRAWGNFGFYLGGSNDNLDAIKALDPKSAPGIKVFMGASTGNMLVDD
                     PVVLDGIFEHAPTPIITHCEDTPMIEANLAAWKARCGDDIPVEAHPDIRSREACLRSS
                     ELAISLARKHGTRLHVLHISTADELALFEPGPLVRADGSRKQITAETCIHFLRFDRGD
                     YARLGNLIKCNPAIKDPTDREALIGALAGDVLDVLATDHAPHTLEEKSRPYAQAPSGL
                     PLVQFALNAALELVHEGRLTTAQVVQKFAHAPAQLFDVAGRGFLREGYWADLVLVDDT
                     PFTVRREDVLSKCGWSPFEGTTFHSRIASTWVNGVQAWNGSRLLGTPQGQRLVFAR"
     gene            6034..6888
                     /locus_tag="VLM17_07965"
     CDS             6034..6888
                     /locus_tag="VLM17_07965"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010382291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HSR65518.1"
                     /translation="MLLYALLLAGCTLHAPALRAVDPPAAHPTLVLPDAAQQGALVVG
                     HATPGSTVRTEGRVLRLSADGRFVFGLPRDAQGEVVVEVEARDLPPTIRRLRVLPREW
                     PVERIVGAPPETVQPPPEIAARIAREQARVDAARSRDDARDDYAMRFDWPVAGRVSGR
                     FGNQRVYVLPDGTDVAGAPHSGMDIAAPAGTPVRAPAAGIVSFAAPDLYLTGGTVLLD
                     HGHGVSSSFLHLSRIDVQVGQRVGRGETIGAVGATGRATGPHLHWGMNWFGVRVDPLL
                     VLQAAPAP"
     gene            complement(6889..>7285)
                     /locus_tag="VLM17_07970"
     CDS             complement(6889..>7285)
                     /locus_tag="VLM17_07970"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GTP cyclohydrolase, FolE2/MptA family"
                     /protein_id="HSR65519.1"
                     /translation="AGARPLSNEVVREWLASERGLAATPHAQRSRAEVRVELRPAFDE
                     LPVAALIDALEEALGTPVQTAVKREDEQAFAELNAANLMFCEDAARRVAAVLARDPRI
                     ERFEASVAHFESLHPHDAVARVAGRGPDA"
BASE COUNT          935 a         2675 c         2591 g         1084 t
ORIGIN      
        1 ggcggccggg ctggcacatc gagtgctcgg cgatggccga ggcgcacctg ggccagacga
       61 tcgacatcca cgccggcggc gtcgacctgc agttcccgca ccacgagaac gagatcgcgc
      121 agagcgaatg cgcgcacggc ggcaagctgt tcgcgcgcta ctggctgcac aacggcatgc
      181 tggtgttcgg cggcgcgaag atgtcgaagt cgctgggcaa catcgaacgc atccacgacc
      241 tgctccagaa gcatccgcac gaggcgctgc gctacgcgct gctttcggcg cactaccggc
      301 agccgctgga ctggtcgaac gcgctgatcg agcagtcggt gcgcaccctg gaccggctgt
      361 acgggacgct ccgggacctc gacgacgtcg aggcgtcgcc gcgcatcccg caggcgatcg
      421 aggacgcgct cgacgacgac ctcaacacgc cccaggcgtt ggcggagatc gcccgcatcg
      481 ccggcgacgc gcgcaaggcc ggggcgccgg aagaaaaacg ccggctgaag gcggagctgc
      541 tcggagccgg gctcgtgctc ggcctgctgc agcagccggc ggccgcgtgg ttcgggcgcg
      601 gcaccgtggc tggcgaggac gtgcgcatcc aggcgctgat cgacgagcgt ggcgcggcga
      661 agaaggcgcg cgacttcgcg cgcgcggacg cgatccgcga gcagctcgcg gccgagggcg
      721 tcgtgctgga ggacacgccg cagggcgtgc ggtggaagcg cgcctgacgc cttcccccgc
      781 aggaccgtcg cacgctggcg gtaaaatggc cccgtgaacg acaccgcctt ccccctcgag
      841 cccacggccg ccgcggccca gcaggccatc gcggacgagt tcgccttctt cggcgactgg
      901 tcggagcgct accagtacct gatcgacctc ggtcgcaagc tgccgccgct cccggatgca
      961 tgcaagacgg aggagcaccg cctgcacggc tgccagtcga tggtgtggat cacctccgaa
     1021 ggcgcggccg gccgcctgga tttccgcgcg gtgagcgact cggcgatcgt gtccgggctg
     1081 atctacctcg cgctgcgggt gtactcgggg cgaagcgcgg cggagatcct ggcgacggag
     1141 cccgacttca tcgcttccat cggcctcgcc aggcacctgt cgcccacgcg cagcaacggc
     1201 ctggccgcgc tgctcgcctt catccgcgac cgcgcgcgcg aggccgcgtg aacgaggacg
     1261 cgccgcccgc ctcgccgctg cgcaaccgcg ccttcgtcga actcctcgcc ttccgcatcc
     1321 tcgcgatcct gtcctaccag gtcgtcgcgg tcaccgtcgg ctggcacatc tacgagctga
     1381 cccacgaccc gctgtcgctc ggcctcgtcg gcctcgccga ggtgattccc tacttctgcg
     1441 tcgcgccgtt cgccggctac ctcgtcgacc acctgccgcg caggcaactc ggcgcaatcg
     1501 cctgcgccgg gctcgcggcg accgcgctgc tgctcaccgc gatcgcgacc ggccgggccg
     1561 gggtgccggg ccacctgctg atctacgcgg cgatcgcgct gaccggcacc gtgcgcagct
     1621 tcctcagccc gatctacaac gcgttgttcg cgcgggtgct gccgcgcgcg cagttcggcc
     1681 gcggcgcggg cgtgggcagc gtggtgttcc agctgggcct ggtgctcggc ccggcgctcg
     1741 gcggcctgct ggtgggctcg gccggcaagg cggccgccta cggggtcgcg gcggtgctcg
     1801 cggtcgccgc gggcctggcc ctgctggcga tgcgggtcga ggatgcgcgg ccggacggcg
     1861 aacgcgcgcc gatcttcgcc agcatcggcg aaggcctgcg cttcgtgttc ggccatcagg
     1921 tgctgctcgg cgcgctggcg ctggacatgt tcgcggtgct gttcggcggc gcggtggcac
     1981 tgctgccggc gttcatcaag gacatcctgc acgcgggacc ggaggcgctc ggcgtcctgc
     2041 gcgcggcgcc ggccgcaggc gcggtgctgg tgggcgcgtg gatggcgcgg cgcccgcccg
     2101 accgcggcgc cgggcggctg ctgctcgccg cggtcgccgg cttcggcctg tgcatcatcg
     2161 gattcgcgct gtcgcgccag ctgtggctgt cggcggggct gctgttcgcc tccgggctgt
     2221 gcgacggggt gtcggtggtg ctgcgctcga ccatcctgca gctggcgacc ccggactcca
     2281 tgcgcgggcg ggtgtcggcg atcaacgaca tcttcatcgg ctcgtcgaac gaactcggcg
     2341 cgttcgagtc gggactcgcg gcgaagctgc tggggctggt gccgtcggtg gtgttcggcg
     2401 gctgcatgac gctggcggtg gtcgccggaa ccgcgcgact tgcgccgaag ctgcgccggc
     2461 tggacttaag acagctgcac tgagctcctg tccacgtcgg agtagactgc cggcagtcca
     2521 ccggagacga cgtcgatggc agtcgaaacc gcgcgcggac agcgcatcac catccatttc
     2581 gatccggccc gctgcgtcca ttcacgaaac tgcgtgctcg gcaacccgaa ggtcttcgtg
     2641 ccgaacgccg agggcgagtg gctgcatccg gacgcggccc cacccgacga agtggaagcc
     2701 atcgtgcgca gctgcccgtc cggtgcgctc accttcgagc gcgccgacgt ccctggcgag
     2761 caggcgccgg acgtcaacac ggtgcgcgtg cgcgagaacg ggccgctggc cttccatgcc
     2821 gaatgcaccg tcgccggcgc ggtgcagccg ttccgcacga ccctgtgccg gtgcggcctg
     2881 tcgcacaaca agccgttctg cgacaaccgc caccgcgagg gcggcttcgt ggcgaccgga
     2941 gaaccggccg agcggccgtc gcagcccctc gccgcgcgca acgggatgct cgcggtcgag
     3001 cccacccggg acggtccgct gcacgtcacc ggcaacctgg aagtcgtcag cggcaccggc
     3061 cataccgtca accgggtgac cgaaacctgg ctgtgccgct gcgggcgctc gaacaacaaa
     3121 ccctactgcg acggttcgca ccgcaaggcc ggcttccggg cggacggcgc ctgagccgtc
     3181 gccgggtgaa aaacaaaggc cccgcgtgcg cggggccttg gcgatgccgg ggtcgtccgg
     3241 cggtcagtcg ccgatctgct tctgcaggtg ttcccagcgt tcctgctcgt cgatcgtgcg
     3301 ctcggcggtg aggcgcgcct ccagccggtc caggccgatc tcctcgcccg aatccacgct
     3361 gtagccgtat tcccccgaat ccacccgctt gagcgtgctg tcgatcttgc cgatcagctt
     3421 gcggtagcgg tcgcgggtgc gcagttcgag cgagttctcg gtttcgcggg tggcgcgctc
     3481 ggcctcgtcg ccgacgtcgc gcacctcgtc cttgaggttc tcgatcgtct gcttggattc
     3541 ctcgatcagg tccgcgcgcc actgcagcag gcgctggcgg aagtactcga gctgcagcgg
     3601 gctcatgtac tcctcgtccg gcgagggctt gtaacccttg gggacgatcg ggcggccgga
     3661 ggcctcgtcg gtctcgtgcg gcacgacctt gatcttgcgg ttgctcgccg gcgcgctggg
     3721 cttggcggca acggccacgg cgaccttgcc gaccgggcgc gcgctggccg cgaccggctt
     3781 ggtcggcgcc gcctgctgcg cgagttccct cgcgaccggc ttcgccaccg gcttggcgac
     3841 cggcttgggc gcatggtcgg cggcgtgcgt ggactgcggc tgcttcggcg tttccacctt
     3901 gaccggaccg gcgagcgctt cgcggccgat ggccttggcg gcgggcctgg ccgccggcct
     3961 ggcggcgggt gccggcttct tcgcgacggg ggcgggacgg gcgggcgcag cggccttggc
     4021 cggggccttc gccaccggct tggcggcctt ggccggcgcc ttcgcgggag cggccttgga
     4081 cggaaccttg gcgaccggct tccgggccgg cgccgccttc cgggccggcg cgggcttctt
     4141 cgcgacgacg gctttcttcg ccgccggcct gccggccgcc ttcttcgccg caaccggctt
     4201 cttggcgacg gtcttcttca ccggcgcgct ggactttttc ggggcggcct tggcggcctt
     4261 cttcgcgggt ttcttcgctg ccacgacggg ggtgttcctc tgttcccttg aggcgggaaa
     4321 gcgcgctgtt ataccctgcc ggggtgatag cggcaaccgc gcgagtctcg gtatcgccgc
     4381 gtgcaaacat cgtgatcgac cgactcctca tcgccctcct gcgcggctac aaacgctggc
     4441 tcagtccgct gctcggaccg cgctgccgct tcgtgccgac ctgttcggag tacgcgatgg
     4501 aagcgatcgc gcgcttcggc gcgttcaagg gcggctggct cgcgctccgg cgcatcggcc
     4561 gctgccatcc gctgcatccc ggcgggcacg atcccgtgcc gccccgctga caaggaaccg
     4621 ccgcatggcc gacacgctga tcgtcaatgc ccgcctggtg aacgagggac gcgagttcga
     4681 gggcgacctg cgcatcgagc acgggcgcat cgccgagatc ggcagcgggc tgtcggcgcg
     4741 cggcaacgag gtcgtcgtcg acgcggccgg cgcgcgcctg ctgcccggca tggtcgacga
     4801 ccaggtgcac ttccgcgaac cgggcctcga atacaaggcc gacatcgcga ccgaatccgc
     4861 ggcggcggtg gccggcggcc tgaccacctt catggacatg cccaatacct cgccgccgac
     4921 gctcgaccgc gccgcgctcg aggacaagta ccgccgcgcc gccggccgcg cctggggcaa
     4981 cttcggcttc tacctgggcg gcagcaacga caacctcgac gcgatcaagg cgctcgaccc
     5041 gaagtccgcc cccggcatca aggtgttcat gggcgcctcc accggcaaca tgctggtcga
     5101 cgacccggtg gtgctcgacg gcatcttcga gcacgcgccg acgccgatca tcacccactg
     5161 cgaggacacg cccatgatcg aggcgaacct cgcggcgtgg aaggcgcgct gcggcgacga
     5221 catcccggtc gaggcgcatc ccgacatccg ttcgcgcgag gcctgcctgc gctcgagcga
     5281 gctcgccatc tcgctggcgc gcaagcacgg cacccgcctg cacgtgctgc acatcagcac
     5341 cgccgacgag ctggccctgt tcgaacccgg cccgctcgtc cgcgccgacg gcagccgcaa
     5401 gcagatcacc gccgaaacct gcatccactt cctgcgcttc gaccgcggcg actatgcgcg
     5461 cctgggcaac ctgatcaagt gcaacccggc gatcaaggac ccgaccgacc gcgaggcgct
     5521 gatcggcgcg ctcgccggcg acgtgctcga cgtgctcgcc accgaccatg cgccgcacac
     5581 gctggaggag aagtcgcggc cgtacgccca ggcgccgagc gggctgccgc tggtgcagtt
     5641 cgcgctcaac gccgcgctgg aactcgtgca cgaaggccgc ctcaccaccg cgcaggtcgt
     5701 gcagaagttc gcgcacgcgc cggcgcagct gttcgacgtc gccgggcgcg gcttcctgcg
     5761 cgaaggctac tgggccgacc tcgtgctggt cgacgacacg ccgttcaccg tgcgccgcga
     5821 ggacgtgctg tccaagtgcg gctggtcgcc cttcgaaggc acaaccttcc attcgcgcat
     5881 cgcgtccacc tgggtcaacg gcgtgcaggc gtggaacggc agccgcctgc tcggcacgcc
     5941 gcagggacag cggctggtgt tcgcgcgttg acggcggcgg tggcgcgcgg ccccggccgg
     6001 tcgcgcaacg gcgcaaccgc tgcgcgatcg ccggtgctgc tgtacgccct gctgctcgcc
     6061 ggctgcaccc tgcacgcgcc cgcgttgcgc gccgtcgatc cgcccgccgc gcatccgacg
     6121 ctggtgctgc ccgacgccgc gcagcagggc gcgctggtgg tcggccacgc aacgccgggc
     6181 agcaccgtcc ggaccgaagg ccgcgtgctg cggttgtccg ccgatggccg cttcgtgttc
     6241 ggcctcccgc gcgacgcgca gggcgaggtc gtggtcgagg tggaggcgag ggaccttccg
     6301 ccgaccatcc gccgcctccg cgtgctgccg cgcgaatggc cggtcgaacg catcgtcggc
     6361 gcgccgccgg aaacggtgca gccgccgccg gaaatcgccg cgcgcatcgc gcgcgaacag
     6421 gcccgggtcg acgccgcgcg cagccgcgac gatgcccgcg acgactacgc gatgcgcttc
     6481 gactggccgg tcgctggccg cgtgtccggc cgcttcggca accagcgcgt gtatgtgctg
     6541 ccggacggca ccgacgtcgc cggcgcgccg cattcgggga tggacatcgc cgcgccggcc
     6601 ggcacgccgg tgcgcgcacc ggccgccggc atcgtcagct tcgccgcgcc cgacctctac
     6661 ctcaccggcg gcacggtgct gctcgaccac ggccacggcg tgagcagcag tttcctgcac
     6721 ctgtcgcgga tcgacgtgca ggtcgggcag cgcgtcggcc ggggcgagac gatcggcgcg
     6781 gtcggcgcga ccggacgcgc gaccgggccg cacctgcact ggggcatgaa ctggttcggg
     6841 gtgcgggtgg atcccctgct ggtcctgcag gcggcgccgg cgccctagtc aggcgtcggg
     6901 gccgcgcccc gccacccgcg ccaccgcatc gtgcggatgc aggctttcga aatgggcgac
     6961 gctcgcctcg aagcgctcga tccgcggatc gcgcgccagc accgccgcca cgcgccgcgc
     7021 ggcgtcctcg cagaacatca ggttggcggc gttgagttcg gcgaaggcct gttcgtcctc
     7081 gcgcttgacc gcggtctgca ccggcgtgcc gagcgcctct tccagggcat cgatcagcgc
     7141 ggcgaccggc agctcgtcga aggcgggcct gagctcgacc cgcacctcgg cgcgactgcg
     7201 ctgcgcatgc ggcgtggcgg ccagcccacg ctcggacgcg agccactcgc gcaccacctc
     7261 gttcgacagc gggcgcgcgc ccgcg
//
LOCUS       DATIQC010000372         5956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_130285, whole genome shotgun sequence.
ACCESSION   DATIQC010000372 DATIQC010000000
VERSION     DATIQC010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130285"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..613
                     /locus_tag="VLM17_07975"
     CDS             <1..613
                     /locus_tag="VLM17_07975"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HSR65520.1"
                     /translation="VAIVLEAARALRAAPPPQPVLFAALTGEEQGLLGAQWLALHPPG
                     PLAADLNLDMPMLLAPSRDVVVIGGAHSGLGALAQRAAQGLGVPLSPDPFPEEAVFVR
                     SDQYAFVRAGVPALMLDGGVVPAASSAGKKADATTMPLLAQRQFLRECYHRPCDDARQ
                     PIQYEDAARLARLAARIGAEVGGAPAPPRWATGDFFGARFAPR"
     gene            complement(619..1101)
                     /locus_tag="VLM17_07980"
     CDS             complement(619..1101)
                     /locus_tag="VLM17_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009589759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSR65521.1"
                     /translation="MKDAAVTLDRTDLALLAELQRAGRLTNAELAERVHLSPSACLRR
                     VQRLEREGVIAGYRAEVDPAKLGLDLTAFVRVQLARHDAAAIEAFSASVNASDEVIAC
                     HALTGDMDYLLHVVVRDLEHFSRFLLDRLLGQAGVADVNSSFVLRTVKAFRGLPLPRA
                     "
     gene            1216..2112
                     /gene="phhA"
                     /locus_tag="VLM17_07985"
     CDS             1216..2112
                     /gene="phhA"
                     /locus_tag="VLM17_07985"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005411781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004505 - phenylalanine 4-monooxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HSR65522.1"
                     /translation="MNVATAPRRVENLHTDKGKVPVYATGIVAQPWDDYRAEDHATWA
                     TLYARQREILRGRACDEFLQAQDAMGMTPDRIPRFADLNEVLQAATGWTLIGVEGLLP
                     ELDFFDHLANRRFPVTWWIRRPDQIDYIEEPDLFHDLFGHVPLLMNPVFADYMQAYGR
                     GGVKAHGIGPDALQQLTRLYWYTVEFGLIRQQDGLRIYGSGIVSSKGESIHCLESAAP
                     NRIGFDLERIMRTRYRIDTFQKTYFVIDSFEQLMDATRPDFTPIYARIASEPSYPAGT
                     VLDTDRVFQRGTGEGWSNEGDV"
     gene            complement(2120..2830)
                     /locus_tag="VLM17_07990"
     CDS             complement(2120..2830)
                     /locus_tag="VLM17_07990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HSR65523.1"
                     /translation="MRRADRLFLIIHALRGRRVALPAHALAQTLGVSSRTVYRDVADL
                     QRSGVPIEGEAGVGYMLRRGSDIPPLMFSADELEALVVGTRFVRAFGGERLGQGASAA
                     LLKIQAVLPADLRERGRRTRIFAPPREDRIEATGLIDRLHAAIEARHVLRLDYCDQDG
                     HASVRDVEPLCLSFWGGAWTLGAWCRLREGFRSFRPDRIAALAPLLRDGAPDTFVETA
                     QRGLDAYLRAVGAQALPD"
     gene            complement(2881..3702)
                     /locus_tag="VLM17_07995"
     CDS             complement(2881..3702)
                     /locus_tag="VLM17_07995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HSR65524.1"
                     /translation="MNVLFKNLLFLHGYVGPGGRSERPPASPSSPPRSPGVFELRDYT
                     LHPGQRDVLVDLFEREFIEAQEALGMRVLAHFRDLDAPDRFVWFRGFAGMAHRGEALP
                     AFYRHGEAWQAHRDAANATMRDSDNVLLLREAWPGSGFASGGAHPPVGETPSKSCIVV
                     VTYAFAQPVDATVCAFFRDTVLPLAAGLGARPLATFATEEAANNFPALPVREGEHVVV
                     SVSAFDDTSAHANFAYAVATDARWQREVAAFLRPRSVAPPQVRRLQACARSAVRG"
     gene            complement(3738..4610)
                     /locus_tag="VLM17_08000"
     CDS             complement(3738..4610)
                     /locus_tag="VLM17_08000"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HSR65525.1"
                     /translation="MWTRDAATEIDAPAARLWALFTDLAGWPAWNAGIEQIALHGPFR
                     DGTVFSLRPPGMDAFDGTLAEVVPGRGFTDETVFGATVVRVRHVIEPLAGDRVRVVFR
                     TEAEGPGAAEIGAAASADFPDVLRALKRHAEHEARDGRHDFDFLHGTWRVDNRRLRQR
                     LAGCTAWDRFDARVTCTPLLGGIANLETHVFDWNGGRHGLALRLYSPTSRRWSIRWAN
                     GADGTLEPPVHGGFDGDVGLFFGEDVHAGRPVRVRFTWTRLDADRARWEQAFSADGGD
                     TWEPNWVMDFARDA"
     gene            4734..5798
                     /locus_tag="VLM17_08005"
     CDS             4734..5798
                     /locus_tag="VLM17_08005"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012509609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HSR65526.1"
                     /translation="MSSSPISLTRFLIEEERAGHVNAELRLLIEVVARACKSISIAVG
                     KGALGGVLGDAGTGGVASINVQGEAQKKLDVLSNEILLEANAWGGHLAALASEEMEHS
                     QPICDIAPDGYPRGNYLLLFDPLDGSSNIDVNISVGTIFSVLRCPEGVTVPSDHDFLQ
                     PGTAQVAAGYCTYGPSTMLVLTVGSGTHAFTLDREVGSFVLTTRGMRIPEETKEFAVN
                     MSNQRFWEAPMQAYVGDLLIGREGPRGKDFNMRWVASMVADVHRILTRGGIFSYPLDS
                     KCAPKGGKLRLMYEANPMSFLVEQAGGAASTGRERMLEVQPTGLHQRVPVFLGSKHEV
                     EAAVRYHVEHDARAAQPALA"
     gene            5816..>5956
                     /locus_tag="VLM17_08010"
     CDS             5816..>5956
                     /locus_tag="VLM17_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005411768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HSR65527.1"
                     /translation="MRPADFIEVYDDALDAATCAALVERMRASDALQPGRVGGGVFPE
                     LKR"
BASE COUNT          887 a         2131 c         2146 g          792 t
ORIGIN      
        1 cgtggccatc gtgctggagg cggcgcgcgc gctgcgggcc gcgccaccgc cgcaacccgt
       61 gctgttcgcc gcgctgaccg gcgaggaaca gggcctgctc ggcgcgcagt ggctggccct
      121 gcatccgccc ggaccgctcg ccgccgacct caacctcgac atgccgatgc tgctggcgcc
      181 cagccgcgac gtggtggtga tcggcggcgc gcacagcggg ctgggcgcgc tggcgcagcg
      241 cgccgcgcag gggctcggcg tgccgctgtc gcctgacccg ttcccggagg aagccgtgtt
      301 cgtgcgcagc gaccagtacg cgttcgtgcg cgcgggggtg ccggcgctga tgctggacgg
      361 cggcgtggtg ccggcggcgt ccagcgcagg aaagaaggcc gatgcgacga ccatgccgct
      421 gctcgcgcag cgccagttcc tgcgcgagtg ctaccaccgt ccctgcgacg atgcgcgcca
      481 gccgatccag tacgaggacg ccgcgcggct ggcacggctg gcggcacgca tcggcgccga
      541 ggtcggcggc gcgccggcgc cgccgcgctg ggcgacgggc gacttcttcg gcgcacgctt
      601 cgcgccgcgc tgagccgctc aggcgcgcgg caacggcagc ccgcggaacg ccttcaccgt
      661 gcgcagcacg aagctcgagt tgacgtcggc cacgccggcc tggccgagca ggcggtcgag
      721 caggaagcgt gagaagtgct cgaggtcgcg caccaccacg tgcagcaggt agtccatgtc
      781 gccggtcagc gcgtggcagg cgatgacctc gtccgaggcg ttcacgctcg cgctgaaggc
      841 ctcgatcgcg gccgcgtcgt ggcgcgccag ctgcacgcgc acgaaggcgg tgaggtcgag
      901 cccgagcttc gccgggtcga cctcggcgcg gtaaccggcg atcacgccct cccgctccag
      961 ccgctgcacg cggcgcaggc aggccgaggg cgacaggtgc acgcgttcgg ccagctcggc
     1021 gttggtcagg cggccggcac gctgcagctc ggcgagcagc gcgaggtcgg tgcggtcgag
     1081 ggtgacggcg gcatccttca cggcggattc ctcgtttgac gcaacaatcg tgcgcctatc
     1141 tcccgcttcg gcgcaatgac gcaagcccgt tgcgcgcccg agccgctaca gtcatccggt
     1201 caccggagac ccgccatgaa tgtcgccacc gccccgcgcc gcgtcgagaa cctgcacacc
     1261 gacaagggca aggtgccggt gtatgccacc gggatcgtgg cccagccgtg ggacgactac
     1321 cgcgccgagg accacgcgac ctgggcgacg ctgtacgcgc gccagcggga gatcctgcgg
     1381 ggccgggcgt gcgatgagtt cctgcaggcg caggacgcga tgggcatgac ccccgaccgc
     1441 atcccgaggt tcgccgacct caacgaggtg ctgcaggcgg cgaccggctg gacgctgatc
     1501 ggcgtcgagg gcctgctgcc cgagctcgac ttcttcgacc acctcgccaa ccgccgcttc
     1561 ccggtgacct ggtggatccg ccggccggac cagatcgact acatcgagga gcccgacctc
     1621 ttccacgacc tgttcggcca cgtgccgctg ctgatgaacc cggtgttcgc cgactacatg
     1681 caggcctacg gccggggcgg ggtgaaggcg cacgggatcg gcccggacgc gctgcagcag
     1741 ctcacgcgcc tgtactggta cacggtggaa ttcggcctga tccggcagca ggacgggctg
     1801 cgcatctacg gcagcggcat cgtgtcgtcg aagggcgaat cgatccactg cctcgagagc
     1861 gccgcgccca accgcatcgg cttcgacctc gagcggatca tgcgcacgcg ctaccgcatc
     1921 gacaccttcc agaaaacgta cttcgtcatc gacagcttcg agcagctgat ggacgcgacg
     1981 cggccggact tcacgccgat ctacgcgcgc atcgccagcg agccgtcgta tccggccggc
     2041 acggtgctcg acaccgaccg cgtgttccag cgcggcaccg gcgaaggctg gtcgaacgaa
     2101 ggcgacgtct gacggcgcgt cagtccggca gcgcctgtgc gccgacggcg cgcaggtagg
     2161 catcgagtcc gcgctgcgct gtttcgacga aggtgtcggg cgcgccgtcg cgcagcagcg
     2221 gcgccaacgc ggcgatgcgg tctgggcgga agctgcggaa accctcgcgc aggcggcacc
     2281 acgcgccgag cgtccacgcg ccgccccaga acgacaggca cagcggctcg acgtcgcgca
     2341 cgctcgcgtg gccgtcctgg tcgcaatagt cgagccgcag cacgtggcgg gcctcgatcg
     2401 cggcatgcag gcggtcgatc aggccggtgg cctcgatccg gtcctcgcgc ggcggcgcga
     2461 agatgcgggt gcgccggccg cgttcgcgca ggtcggcggg cagcaccgcc tggatcttca
     2521 gcagcgcggc gctggcgccc tggccgagac gctcgccgcc gaacgcgcgc acgaagcgcg
     2581 tgccgaccac cagcgcctcg agctcatcgg cggagaacat cagcggcggg atgtcgctgc
     2641 cacgacgcag catgtagccg acgccggcct cgccttcgat cggcacgccc gagcgttgca
     2701 ggtcggcgac atcgcgatac acggtgcgtg acgagacgcc gagcgtctgc gcgagcgcgt
     2761 gcgcgggcag cgcgacgcga cggccgcgca gggcgtggat gatgaggaac agccggtcgg
     2821 cgcggcgcat cccccatcat cgccggtccg ccgtgcggcg accacagtga acgcgctccg
     2881 ctagccccgc accgccgagc gcgcgcatgc ctgcaggcgc cttacctgcg gtggcgcgac
     2941 gctgcgcgga cgcaggaagg ccgccacctc gcgctgccag cgtgcgtcgg tcgcgacggc
     3001 ataggcgaag ttcgcatgcg ccgaggtgtc gtcgaaggcg ctgaccgaca ccaccacgtg
     3061 ctcgccttcg cgcaccggca gcgccgggaa gttgttcgcg gcctcttcgg tcgcgaacgt
     3121 cgccagcggg cgtgcgccca gtccggccgc gagcggcagg accgtgtcgc ggaagaacgc
     3181 gcacaccgtt gcgtccaccg gctgcgcgaa ggcataggtc acgaccacga tgcaggattt
     3241 ggatggcgtc tcgcccaccg gtgggtgagc cccgcccgat gcgaatcccg agcccggcca
     3301 cgcttcccgc aggagcagca cgttgtccga atcgcgcatc gtcgcgttcg cggcgtcgcg
     3361 gtgcgcctgc catgcctcgc cgtgccggta gaacgccggc agcgcttcgc cgcggtgggc
     3421 catgccggcg aagccgcgga accagacgaa gcggtcgggg gcgtcgaggt cgcggaaatg
     3481 cgcgagcacc cgcatgccaa gcgcttcctg cgcctcgatg aactcgcgct cgaacaggtc
     3541 gacgagcacg tcgcgctggc cgggatgcag ggtgtagtcg cgcagttcga agacgccggg
     3601 cgaacgcggc ggagaggacg gcgacgctgg tgggcgttcg gaccgaccgc cgggaccgac
     3661 gtagccgtgc aggaacagca ggttcttgaa gaggacattc atcgcgatcg ctcccgtcgc
     3721 agattcgaag ccgcgcctca cgcgtcgcgc gcgaagtcca tcacccagtt gggttcccac
     3781 gtgtcgccgc cgtccgcgga aaacgcctgt tcccagcgcg cgcggtcggc atccaggcgc
     3841 gtccaggtga agcgcacgcg caccggccgg ccggcgtgca cgtcctcgcc gaagaagagg
     3901 ccgacgtcgc cgtcgaaacc gccgtgcacg ggtggctcca gggtgccgtc tgcgccgttc
     3961 gcccaacgga tcgaccagcg ccgcgacgtc ggtgaataca ggcgcagcgc caggccgtgg
     4021 cggccgccgt tccagtcgaa cacgtgcgtt tcgaggttgg cgatgccgcc cagcaacggc
     4081 gtgcacgtga cgcgcgcgtc gaagcggtcc cacgccgtgc agcccgcgag gcgctgccgg
     4141 aggcgccggt tgtcgacgcg ccaggtgccg tgcaggaagt cgaagtcgtg gcggccgtcg
     4201 cgtgcctcgt gttcggcatg gcgcttcagc gcccgcagca cgtcggggaa gtcggcgctg
     4261 gcggccgcgc cgatctccgc ggccccgggt ccttcggcct cggtgcggaa caccacccgc
     4321 acgcggtcgc cggcgagcgg ttcgatgaca tggcgcacgc gcacgacggt ggcgccgaac
     4381 acggtctcgt cggtgaagcc acggcccggc acgacctcgg ccagggtgcc gtcgaacgcg
     4441 tccatgcccg gcggccgcag gctgaacacg gtgccgtcgc ggaacgggcc gtgcagtgcg
     4501 atctgttcga tgccggcgtt ccaggcgggc cagccggcga ggtcggtgaa cagcgcccac
     4561 aggcgggcgg cgggcgcatc gatttcggtg gcggcgtcgc gggtccacat ggcgggcgtt
     4621 ccgggaaggc ggaacggcaa gcgtgcgccg ggcctgctgc cagcctgctg tcagtagccc
     4681 gctggccggg cagcggcgac aatgggcgtc cgtttccgac cgccgcgccc gccatgtcct
     4741 cgagcccgat ctccctgacc cgcttcctga tcgaggagga acgcgccggc cacgtcaacg
     4801 ccgagctgcg gctgctgatc gaggtcgtgg cgcgcgcgtg caagagcatc tcgatcgcgg
     4861 tcggcaaggg cgccctcggc ggcgtgctcg gcgatgcggg caccggcggc gtcgccagca
     4921 tcaacgtgca gggcgaggcg cagaagaagc tcgacgtgct gtccaacgag atcctgctcg
     4981 aggccaacgc ctggggcggc cacctcgccg ccctcgcctc cgaggagatg gagcactcgc
     5041 agcccatttg cgacatcgcc ccggacggct acccgcgcgg caactacctg ctgctgttcg
     5101 acccgctcga cggctcctcc aacatcgacg tcaacatctc ggtcggcacg atcttctcgg
     5161 tgctgcgctg ccccgaaggc gtgaccgtgc cgtcggacca cgacttcctg cagccgggca
     5221 ccgcgcaggt cgccgccggc tactgcacct acgggccgtc gacgatgctg gtgctgaccg
     5281 tcggcagcgg cacgcacgcg ttcaccctgg accgcgaagt cggcagcttc gtgctgacca
     5341 cgcgcggcat gcgcatcccg gaggagacga aggaattcgc ggtcaacatg tccaaccagc
     5401 gcttctggga agcgcccatg caggcctatg tcggcgacct gctcatcggc agggaaggtc
     5461 cgcgcggcaa ggacttcaac atgcgctggg tcgcctcgat ggtggccgac gtgcaccgca
     5521 tcctcacgcg cggcggcatc ttcagctatc cgctcgacag caagtgcgcc ccgaagggcg
     5581 gcaagctgcg gctgatgtac gaagcgaacc cgatgagctt cctggtcgag caggccggcg
     5641 gcgccgcgag caccggccgc gagcgcatgc tcgaggtgca gccgacgggc ctgcaccagc
     5701 gcgtgccggt gttcctcggc tcgaagcacg aagtcgaggc cgcggtgcgc taccacgtcg
     5761 aacacgacgc gcgcgccgcg cagccggcgc tggcctgacg cgggcgggcg cacgcatgcg
     5821 gcccgccgac ttcatcgagg tctacgacga cgccctcgac gcggcgacct gcgccgcgct
     5881 ggtcgagcgc atgcgcgcga gcgatgcgtt gcagcccggc cgcgtcggcg gcggcgtgtt
     5941 tcccgaactc aagcgc
//
LOCUS       DATIQC010000373         4064 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_413315, whole genome shotgun sequence.
ACCESSION   DATIQC010000373 DATIQC010000000
VERSION     DATIQC010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413315"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..499)
                     /locus_tag="VLM17_08015"
     CDS             complement(<1..499)
                     /locus_tag="VLM17_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019239 - deaminase activity [Evidence
                     IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HSR65528.1"
                     /translation="MPPLQLHLTLPVWVHDLQLASTYPGDEAKVALAIELARRNVESR
                     SGGPFGAVVFNAADRIIAIGVNRVLQQSCSVAHAETMACMLAQQRLQVSRINEGGGPV
                     TLATSAQPCCQCYGATFWAGIDRLLIGARSEDVMSLTEFDEGPLPADWIGELVRRGIE
                     VVRDLH"
     gene            complement(516..2270)
                     /locus_tag="VLM17_08020"
     CDS             complement(516..2270)
                     /locus_tag="VLM17_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012479204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004819 - glutamine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase/YqeY domain fusion
                     protein"
                     /protein_id="HSR65529.1"
                     /translation="MAPADSQTVAPADAPARNDFIRQIVREDLASGKHAAVRTRFPPE
                     PNGYLHIGHAKAICLDFGVAAEFGGWCNLRLDDTNPAKEDPEYVRAIQDDVHWLGFDW
                     HALRHASDYFEVFYLAGEQLIRQGDAFVCDLTAEQVREYRGTLTEPGRNSPYRDRGVE
                     ENLDLFRRMRAGEFPDGARTLRAKIDMASGNINLRDPALYRIKHVEHQNTGNAWPIYP
                     MYDFEHSLSDAVEGITHSLCTLEFEDHRPLYDWCVDKVDLAHRPELLAPVRAKGIRDP
                     AAKPRQIEFSRLNFNYLVMSKRKLMALVTEGLVDGWDDPRMPTLQGIRRRGYTPSALR
                     LMVDRVGISKQNSLLDISILEGALRDDLDAHAPRRMAVIDPVKLTITNLPDAHEEQLA
                     FANHPKDESAGTRSVAFSNALWIEREDFEEVPPKGFKRLTVGGDVRLRGAGIVRCDEV
                     VKDAGGRVVELRCTLDPESRPGMEGANRKVKGTIHWVSARHGVHAEIRLYDRLFTVAD
                     PDNEESSGKTYKDHLNPESRRVVRGYVEGAAAQAAPEQSFQFERLGYFVADRYDHRPD
                     APVFNRSVTLRDTWAQKA"
     gene            2410..2673
                     /locus_tag="VLM17_08025"
     CDS             2410..2673
                     /locus_tag="VLM17_08025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HSR65530.1"
                     /translation="MRVVYEAANLIDAHLVRHALEDAGIPAFVRGEALLGGVGELPAC
                     GLLAVCVPDAAWPEADALVRGLPLVVGEPRTNEAPWPVGALGA"
     gene            2683..>4064
                     /locus_tag="VLM17_08030"
     CDS             2683..>4064
                     /locus_tag="VLM17_08030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65531.1"
                     /translation="MRDYARETLVGIAIASLLALFAMGVLAAARPLATPAPLRLDAAP
                     GAGLSRDGDALLLAGGAAPATAATLHFTLPAPDANGTRWVLWLDRDPVDALWLERAGW
                     RSARRDFYRPAADEGALPSGFVFPLPADWHGDVRLVLHARGHVHAALHPRLLPEAVAS
                     RVAYRRIALASAVYAGLCVIALLSLALYSAAREHAFLALAGCAGLALLLVAASNGHLY
                     AVPVLRLFAAWRGAGLWALGLLFCASTLQLLLRYADLRAGSLSATRWFDLASILLAAL
                     AALCLLDLPALAGWLQSTVTIACLGASAATLVVLVDAAQRRVPMACPLLLLGLLACLA
                     ALARAALSHGMLPDTLWARSGYQLGLLVTAAVLMIGLISRIGEYRDQRDRDHLARLDS
                     ERRMGRESARAELTLALQTHLRALPAADIEWTAFRLLLEHLLPHVPVQAAAAVAYGYH
                     GHDLLLVEPR"
BASE COUNT          498 a         1448 c         1477 g          641 t
ORIGIN      
        1 gatgcaggtc gcgcaccacc tcgatgcccc ggcggacgag ttcgccgatc cagtcggccg
       61 gcagcgggcc ctcgtcgaac tcggtcagcg acatcacgtc ctcgctgcgc gcgccgatca
      121 gcagccggtc gatcccggcc cagaaagtgg cgccgtagca ctggcagcac ggctgcgcgg
      181 acgtcgccag cgtgaccggc ccgccacctt cgttgatgcg tgaaacctgc aggcgctgct
      241 gcgccagcat gcaggccatc gtttccgcat gcgcgaccga acaggactgc tgcagcacgc
      301 ggttgacccc gatcgcgatg atgcggtcgg cggcgttgaa caccaccgcg ccgaacggcc
      361 cgccgctgcg ggactcgacg ttgcggcgcg ccagctcgat cgccagcgcg accttggcct
      421 cgtcgcccgg gtaggtcgac gcgagctgca ggtcgtgcac ccagacaggc agcgtcaggt
      481 gcagctgcag cggcggcagg aaacccgcca accgctcagg ccttctgcgc ccaggtgtcg
      541 cgcagggtca cgctgcggtt gaacaccggc gcgtccggcc ggtggtcgta gcggtcggcg
      601 acgaagtagc cgaggcgctc gaactggaac gactgctccg gcgccgcctg ggcggcggca
      661 ccttcgacgt agccacggac gacccggcgg gactcggggt tcaggtggtc cttgtaggtc
      721 ttgccgctgc tttcctcgtt gtccgggtcg gccacggtga acaggcggtc gtacaggcgg
      781 atctccgcgt gcaccccgtg gcgcgcgctg acccagtgga tggtcccctt gaccttgcgg
      841 ttggcgcctt ccatgccggg gcgcgactcc ggatcgagcg tgcagcgcag ctcgaccacg
      901 cgtccgccgg catccttgac cacctcgtcg cagcgcacga tgccggcgcc gcgcaggcgc
      961 acgtcgccac cgaccgtcag gcgcttgaag cccttcggcg gcacttcctc gaagtcctcg
     1021 cgctcgatcc acagcgcgtt cgagaacgcg acgctgcgcg tgcccgccga ctcgtccttc
     1081 ggatggttgg cgaaggcgag ctgctcctcg tgcgcgtcgg gcaggttggt gatcgtcagc
     1141 ttgaccggat cgatcaccgc catgcggcgc ggcgcgtgcg cgtcgaggtc gtcgcgcaac
     1201 gcgccttcga ggatggagat gtcgagcagc gagttctgct tgctgatgcc gacgcggtcg
     1261 accatcaggc gcagcgccga cggcgtgtag ccgcggcggc ggatgccctg cagggtcggc
     1321 atgcgcggat cgtcccagcc gtcgacgagg ccctcggtca ccagcgccat gagcttgcgc
     1381 ttgctcatga ccaggtagtt gaagttcagg cgcgagaact cgatctggcg cggcttggcg
     1441 gccggatccc ggatgccctt cgcgcgcacc ggcgcgagca gctcgggccg gtgcgcgagg
     1501 tcgaccttgt ccacgcacca gtcgtacagc gggcgatggt cctcgaactc cagcgtgcac
     1561 agcgaatggg tgatgccctc gaccgcgtcg ctcagcgaat gctcgaagtc gtacatcggg
     1621 tagatcggcc aggcgttgcc ggtgttctgg tgctcgacgt gcttgatgcg gtacagcgcg
     1681 gggtcgcgca ggttgatgtt gccgctggcc atgtcgatct tcgcccgcag cgtgcgcgcg
     1741 ccgtccggga attcgccggc gcgcatgcga cggaacaaat cgaggttctc ctcgacgcca
     1801 cggtcgcggt acggtgagtt gcggcccggc tcggtcagcg tgccgcggta ttcgcgcacc
     1861 tgctcggcgg tgaggtcgca gacgaaggca tcgccctgcc ggatcagctg ctcgccggcg
     1921 aggtagaaca cctcgaagta gtccgacgcg tggcgcagcg cgtgccagtc gaagccgagc
     1981 cagtgcacgt cgtcctggat cgcgcgcacg tactccgggt cttccttcgc ggggttggtg
     2041 tcgtccaggc gcaggttgca ccagccgccg aactcggcgg cgacgccgaa gtccaggcag
     2101 atggccttgg cgtgcccgat gtgcaggtag ccgttgggct cgggcgggaa gcgggtgcgc
     2161 acggcggcgt gcttgcccga agccaggtct tcgcggacga tctggcggat gaagtcgttc
     2221 cgcgccgggg catcggccgg ggcgacggtc tgggagtctg cgggagccac ggattcggcg
     2281 gggttggaca cggctgcggg acggcggaaa acaagccgcc agtgtagccg aggccccgtc
     2341 gtcggcaccg gaaccgcttt tttggcacgc aacttgcgag ccggttccgc aagacagggg
     2401 gacaggacca tgcgggtcgt ctacgaggcg gcgaacctga tcgacgcaca cctggtgcgc
     2461 catgcgctgg aggacgcggg cattcccgcg ttcgtgcgcg gcgaggcgct gctgggcggc
     2521 gtcggcgaac tgccggcctg cgggctgctg gcggtctgcg tgccggacgc ggcgtggccg
     2581 gaagccgacg cgctggtgcg cggtctgccg ctggtggtcg gggaaccgcg cacgaacgag
     2641 gctccctggc ccgtgggcgc gctcggggcc tgagggatgc aggtgcgcga ctacgcccgc
     2701 gaaaccctgg tcggcatcgc catcgcctcg ctgctggcgc tgttcgccat gggggtgctg
     2761 gccgcggcgc gaccgctggc cacgcctgcc ccgctgcggc tcgacgccgc gcccggagcc
     2821 gggctgagcc gcgacggcga tgcgctgctg ctcgccggtg gcgcggcgcc cgcgaccgcc
     2881 gcgaccctgc acttcaccct gcccgcaccc gacgccaacg ggacgcgctg ggtgctctgg
     2941 ctcgatcgcg atccggtcga tgccctttgg ctggagcggg ccggctggcg cagcgcgcgg
     3001 cgcgacttct atcgcccggc cgccgacgag ggcgcgctgc cgagcggctt cgtgttcccg
     3061 ctcccggcgg actggcacgg cgatgtccgc ctggtcctgc atgcgcgggg gcacgtgcac
     3121 gccgcgctgc atccgcgcct gctgcccgag gcggtcgcgt cgcgcgtggc ctatcgccgg
     3181 atcgcgctgg cgagcgcggt ctacgccggc ctgtgcgtga tcgcgctgct gtcgctggcg
     3241 ctctactcgg ccgcgcgcga gcacgccttc ctcgccctgg ccggctgcgc cgggctcgcc
     3301 ctgctgctgg tcgcggcgag caacgggcac ctgtacgcgg tgccggtgct gcggctgttc
     3361 gccgcctggc gcggcgccgg gctgtgggcg ctcggcctgc tgttctgcgc gtccaccctg
     3421 cagctgctgc tgcgctacgc cgacctgcgc gcgggcagcc tgtcggcgac gcgctggttc
     3481 gacctcgcca gcatcctgct cgccgccctg gcggcgctgt gcctgctgga cctgcccgcc
     3541 ctggccggct ggctgcagtc gacggtgacc atcgcctgcc tcggtgcgtc ggcggcaacc
     3601 ctggtggtgc tggtggatgc cgcgcagcgg cgcgtgccga tggcctgccc gctcctgctg
     3661 ctcggcctcc tcgcctgcct cgccgcgctg gcgcgcgccg cgctctcgca cggcatgctc
     3721 cccgacaccc tgtgggcgcg ctcgggctac cagctggggc tgctggtcac cgccgcggtg
     3781 ctgatgatcg gcctgatcag ccggatcggc gaataccgcg accagcgcga ccgcgaccac
     3841 ctcgcccgcc tcgactccga gcgccgcatg ggccgtgagt cggcgcgcgc cgaactcacc
     3901 ctcgccctgc agacccacct gcgcgcgctg ccggccgccg acatcgagtg gaccgcgttc
     3961 cgcctgctgc tcgaacacct gctgccgcac gtgccggtgc aggccgcggc ggcggtcgcc
     4021 tacggctacc acggccacga tttgctgctg gtcgagccgc gcag
//
LOCUS       DATIQC010000374         2604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_448461, whole genome shotgun sequence.
ACCESSION   DATIQC010000374 DATIQC010000000
VERSION     DATIQC010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448461"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1123
                     /locus_tag="VLM17_08035"
     CDS             <1..1123
                     /locus_tag="VLM17_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005991792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR65532.1"
                     /translation="LDGAPAGGPRKIRTLVLTPTRELAVQVHDSIRTYGKHLRLSSTV
                     IYGGASMNPQLQTLGRGVDILVACPGRLLDHMERGTAKLDGVELLVLDEADRMLDMGF
                     LPAMKRILGRLPKDRQTLLFSATFEAQIKQLALEFMRNPQQVQVAAQNTIADTIVHRA
                     HPVDGARKRALLIEILARRHADQVLVFGKTKHGCNRLAEQLEEAGLQAVAIHGNKSQA
                     ARQKALNAFKSGKARVLVATDVAARGLDIPDLPLVINHDLPMVAEDYVHRIGRTGRNG
                     ASGEALSLVSPDEAQLLRQIQRLLKQDIAMETVAGYEPSRAIRTDGAPFKANNAPRNA
                     RPPRAHRPHGKPAPRAAHAGPKQHRSGQGAHAGRRDTRA"
     gene            1274..>2604
                     /locus_tag="VLM17_08040"
     CDS             1274..>2604
                     /locus_tag="VLM17_08040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR65533.1"
                     /translation="MRTALVLVAAFTIAAPAHASEATPRARHHPQLAAIARAVSPRSL
                     REIDAKLVGFGTRSSLSDTTSDTRGIGAARRWVKSRFEAISQDCHGCLDVVTPSQVFT
                     GKRTPPQGVEIMDVVAIQRGTTDPDRVIVITGHLDSRRSDVMDATGDAPGANDDASGV
                     SALVECARVLSKYKFPATIVYSADSGEEQGLYGARVIAQYAVDHGWKVEADLNNDIVG
                     NPVGGDGQRDPHSVRVFAEGTKSNETLEQAKYRRYHGGEVDSPSRNLARYMQALAAQY
                     LGDFRVRMVYRTDRYGRGGDQTEFLAQGYPAVRVTESHEDYRHQHQDIRTENGVFYGD
                     TIEHVDFDYLANVTRLDAITIASLANAPAPPGGVETKGEVAYDTTVSWRAVPGAARYT
                     AWWRDTTAPQWQHARDAGRATSIVLKGVNIDDWFFGVSSVSADGWESPVVFP"
BASE COUNT          421 a          951 c          890 g          342 t
ORIGIN      
        1 gctcgacggc gcgcccgccg gcggcccgcg caagatccgc acgctcgtgc tgaccccgac
       61 gcgcgaactc gccgtgcagg tgcacgacag catccgcacc tacggcaagc acctgcgcct
      121 gtcctcgacg gtgatctacg gcggcgcgag catgaacccg cagttgcaga ccctgggccg
      181 cggcgtcgac atcctggtcg cctgcccggg ccgcctgctc gaccacatgg agcgcggcac
      241 cgccaagctc gatggcgtcg agctgctggt gctggacgag gccgaccgca tgctcgacat
      301 gggcttcctg cccgcgatga agcgcatcct cggccgcctg ccgaaggacc ggcagacgct
      361 gctgttctcg gccacgttcg aggcgcagat caagcagctg gcgctggagt tcatgcgcaa
      421 tccgcagcag gtccaggtgg cggcgcagaa caccatcgcc gacacgatcg tgcaccgcgc
      481 gcatccggtc gacggcgcga ggaagcgtgc gctgctgatc gagatcctcg cgcgccgcca
      541 tgccgaccag gtcctggtgt tcggcaagac caagcacggc tgcaaccgcc tggccgagca
      601 gctcgaggaa gcgggcctgc aggcggtcgc catccacggc aacaagagcc aggcggcgcg
      661 gcagaaggcg ctcaacgcct tcaagtcggg caaggcgcgc gtgctggtgg cgaccgacgt
      721 ggccgcgcgc ggactcgaca tccccgacct gccgctggtg atcaaccacg acctgccgat
      781 ggtcgcggag gactacgtgc accgcatcgg ccgcaccggc cgcaacggcg cgagcggcga
      841 agcgctgtcg ctggtgtcgc cggacgaggc gcagctgctg cgccagatcc agcgcctgct
      901 caagcaggac atcgcgatgg aaaccgtcgc cggctacgag ccgagccgcg cgatccgcac
      961 cgacggcgcg ccgttcaagg cgaacaacgc gccgcgcaac gcccgtccgc cgcgcgcgca
     1021 tcgtccgcac ggcaagccgg ccccgcgcgc cgcgcatgcc gggccgaagc agcatcgttc
     1081 cggccagggc gcccacgccg ggcggcgcga tacccgcgcc tgagcgcagg gtcgcacgcc
     1141 atgtgatcga ggaagcccgc catcgcgcgg gcttcttcgt ttccggacaa cggtgcgcgg
     1201 cagcgtgacg gcgtcgatgc cgggcatgca cccggctggt ctatcgttgg cctttcgcct
     1261 ccgggagccg cccatgcgta ccgccctcgt gcttgttgcc gccttcacca tcgcggcgcc
     1321 cgcgcatgcg tccgaagcga cgccgcgggc caggcaccat ccgcagctgg cggcgatcgc
     1381 cagggcggtg tcgccccggt ccctgcgcga gatcgacgcg aagctcgtcg gcttcggcac
     1441 ccgcagttcg ctgtcggaca cgacctcgga cacgcgcggc atcggcgcgg cgcggcgctg
     1501 ggtgaaatcg cgcttcgagg cgatttcgca ggattgccac ggttgcctgg acgtggtcac
     1561 gccctcgcag gtgttcaccg gcaagcgcac gccgccgcag ggcgtcgaga tcatggacgt
     1621 ggtggccatc cagcgcggca ccacagaccc cgaccgcgtg atcgtgatca ccggccacct
     1681 cgactcgcgc cggagcgacg tgatggacgc cacgggcgat gcgcccggcg cgaacgacga
     1741 cgcttccggc gtgtccgcgc tggtcgaatg cgcgcgcgtg ctgtcgaagt acaaattccc
     1801 cgcgacgatc gtctactcgg ccgattccgg cgaggagcag ggcctgtacg gcgccagggt
     1861 catcgcgcag tacgcggtgg accacggctg gaaggtcgag gccgacctca acaacgacat
     1921 cgtcggcaac cccgtcggcg gcgacggcca gcgcgatccg cacagcgtgc gggtgttcgc
     1981 cgagggcacg aagagcaacg agacgctgga acaggcgaag taccgccgct accacggcgg
     2041 ggaggtcgat tcgccctcgc gcaacctcgc gcgctacatg caggcgctcg ccgcgcagta
     2101 tctcggcgac ttccgcgtac gcatggtcta ccgcaccgac cgctacggcc gcggcggcga
     2161 ccagaccgaa ttcctcgcgc agggctatcc ggccgtgcgc gtgaccgaat cgcacgagga
     2221 ttaccgccac cagcaccagg acatccgtac cgagaacggc gtgttctacg gcgacacgat
     2281 cgagcacgtc gacttcgact acctcgccaa cgtgacccgc ctggacgcga tcacgatcgc
     2341 ctcgctcgcc aacgctcccg cgccgccggg cggcgtcgag acgaagggcg aggtcgccta
     2401 cgacacgacg gtgtcgtggc gggccgtccc gggcgccgcg cgctacaccg cctggtggcg
     2461 cgacaccacc gcgccgcaat ggcagcacgc gcgcgatgcc ggcagggcca cgtccatcgt
     2521 gctgaagggc gtcaacatcg acgactggtt cttcggcgtg tcttcggtca gcgcggacgg
     2581 ctgggaaagc ccggtggtgt tccc
//
LOCUS       DATIQC010000375         5019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_307544, whole genome shotgun sequence.
ACCESSION   DATIQC010000375 DATIQC010000000
VERSION     DATIQC010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5019
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307544"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VLM17_08045"
     CDS             complement(<1..400)
                     /locus_tag="VLM17_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019467417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR65534.1"
                     /translation="MHRHMDDGVLARLHQARKHYGRLRALDGLDLTLRAGELLALLGP
                     NGAGKSTAIGLLLGLLRADGGTVELFGRDPQDIAARRHVGVMLQDAALPPTLRVGELI
                     RLAASYYPAPRSLRESAELAGVADLLGRPYG"
     gene            559..1833
                     /locus_tag="VLM17_08050"
     CDS             559..1833
                     /locus_tag="VLM17_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003476565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR65535.1"
                     /translation="MNTSADLLNQLRIDRSAPPPPSSRRGLWIALGLVAGVLVLALLG
                     WLLFGRGKAVEVHVADAVAIGNNGGAPSVLDATGYVVARRMATVSAKITGKVREVLIE
                     EGQHVAAGQVMATLDPVDADAQRDLAAAQLSAARSQVAGVQAQLREADANATRLSGLV
                     RQQLVSRAQYDQAIAQRDALRAQLATARHNASVAGDQLRIAGNGVDNTIVRAPFAGVV
                     VAKAAQPGEIVSPLSAGGGFTRTGIGTVVDMDSLEVEVDVGEAFIGRVQPDMPIEAVL
                     NAYPDWRIPGHVIAIIPTADRSKATVKVRVAFNVRDPRIVPDMGVRVSFLEKAAPAQA
                     RRRPGVLVPAAAVVARGGRQVVFVVADAKADTGVARERAATLGRTLGDDREVLDGVAG
                     GDAVVVNPPDRLADGARVKIVRDDAGEPADNE"
     gene            1902..2591
                     /locus_tag="VLM17_08055"
     CDS             1902..2591
                     /locus_tag="VLM17_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR65536.1"
                     /translation="MALVSIRNLHKTYQRGPERIDVLNGLDLDIAQGDFVALMGPSGS
                     GKTTLLNLIGGLDTPSSGEIEVGGQRIDRLTSGQLAHWRSNNVGFVFQFYNLMPTLTA
                     QKNVELPLLLTRLSSAQRRRNAEIALELVGLKDRARHRPSELSGGQQQRVAIARAIVS
                     DPTLLICDEPTGDLDRQSAEEILTLLQELNRTHGKTIVMVTHDPKAAEYATHTLHLDK
                     GNLVEQVRTAA"
     gene            2680..3837
                     /locus_tag="VLM17_08060"
     CDS             2680..3837
                     /locus_tag="VLM17_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010374852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR65537.1"
                     /translation="MKYLHLIWAALFRSKTRTSLTLLSVVAAFLLFGMLDSVRVAFNS
                     GGSVAGANRLVVASRLSITQMLPYSLLSQIEATPGVRKASYAAWFGGIYQDPKNFFPN
                     FSIGPGYLEMFPEFQLPAAQRKAWEADRTGALVGESLARRFGWKIGDTIPLQATIFPT
                     QGSNAWSFRLDGIFRITDPKRRAQENVLFFHWKYFDEANDYVKGRVGWYMVQLASASD
                     ADRVAKSIDAISANSDHETKAQTEEAFNQAFAKQFADIGLIVTAIMGAVFFTLLLLTG
                     NTMAQAVRERIPELAVLKTIGFTNRSVLWLVLAESVLLIVLGGALGLGLAAVLMPIVS
                     AGSGGLIQLPSVLPQTWAMGVGLMVAIGVLVGLLPALRAMRLSIVDALAER"
     gene            3848..>5019
                     /locus_tag="VLM17_08065"
     CDS             3848..>5019
                     /locus_tag="VLM17_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65538.1"
                     /translation="MKKFFGNLGVVFALALGLAAWIALPWFAVLALALLVALWLLLTR
                     SGRLALAAARVGIAGLPQRWGASSVIVVGIAGVVGVLVAMLAMGEGFKATLDRTGSDA
                     TAIILRGGSQAETNSVITRDQVPLVSSLAGIARDAGGRPVVSPELSQVVNLTSKSDGT
                     DANVQFRGVGPAGWAVRPDLRIVEGRKFAPGLRELVAGRGAQKQFAGLEVGRQLKLAN
                     QMWTVVGIFEAGDSHDSELWADVDVLGPAYQRQAFQSVTVKLAGKDGFKQLKAALAAD
                     PRLKLDVSTTHDYYARQSEQLTKLIRILGTVIGTIMAIGAVFGALNTMYAAVAGRARE
                     IATLRALGFRGLPVVVSVMLETMLLALAGGLLGAGIAWAVFNGYTVSTLGNNFSQVV"
BASE COUNT          715 a         1810 c         1786 g          708 t
ORIGIN      
        1 tgccgtacgg acgcccgagc aggtcggcga cgccggcgag ttccgcgctc tcgcgcaggc
       61 tgcgcggcgc cgggtagtag ctggcggcga ggcggatcag ctcgcccacg cgcagggtcg
      121 gcggcagcgc cgcgtcctgc agcatcaccc cgacgtggcg gcgcgcggcg atgtcctgcg
      181 gatcgcggcc gaacagttcg accgtgccgc cgtcggcgcg cagcaggccg agcagcaggc
      241 cgatcgcggt gctcttgccg gcgccgttgg gaccgagcag ggcgagcagc tcgcccgcgc
      301 gcagggtcag gtcgagcccg tcgagcgcgc gcagcctgcc gtagtgtttg cgggcctggt
      361 gcaggcgggc cagcacgcca tcgtccatgt gcctgtgcat cgctgtcgtt tcccggtcat
      421 tgggtgcggc catgctgggc gcggccgtgc ccgcatgaca gtcgcagcgc tcacccgttc
      481 ggcatgacag ccgtcaggtg acggcggcgg gcggcgcggc taacctgcgc cctcgctccc
      541 tccggccgcc acggatcgat gaacacgtcc gccgacctgc tgaaccagct gcgcatcgac
      601 cgcagcgcgc caccgccgcc atcctcgcgg cgcggcctgt ggatcgcgct cggcctcgtc
      661 gccggcgtgc tcgtgctggc gctgctcggc tggctgctgt tcgggcgcgg caaggcggtc
      721 gaggtgcatg tcgccgacgc ggtcgcgatc ggcaacaacg gcggcgcgcc ctcggtgctg
      781 gatgcgaccg gctacgtggt cgcgcggcgc atggcgacgg tgtccgccaa gatcaccggc
      841 aaggtgcgcg aggtgctgat cgaggaaggc cagcacgtcg cggccggcca ggtgatggcc
      901 acgctggacc cggtcgacgc cgacgcgcag cgcgacctcg ccgccgcgca gctctcggcc
      961 gcgcgcagcc aggtcgccgg cgtgcaggcc cagctgcgcg aggcggacgc gaacgcgacg
     1021 cggctgtcgg gcctggtgcg gcagcagctg gtttcgcgcg cgcagtacga ccaggcgatc
     1081 gcccagcgcg atgcgctgcg cgcgcagctc gccaccgccc ggcacaacgc cagcgtggcc
     1141 ggcgaccagc tgcggatcgc cggcaacggc gtcgacaaca ccatcgtgcg cgcgccattc
     1201 gccggcgtcg tcgtcgccaa ggcggcgcag ccgggcgaga tcgtgtcgcc gctgtcggcc
     1261 ggcggcggct tcacccgcac cggcatcggc accgtggtcg acatggactc gctcgaggtc
     1321 gaggtcgacg tcggcgaggc cttcatcggc cgcgtgcagc cggacatgcc catcgaggcc
     1381 gtgctcaacg cctacccgga ctggcgcatc cccggccacg tgatcgcgat catcccgacc
     1441 gccgaccgca gcaaggcgac ggtcaaggtg cgcgtggcct tcaacgtgcg cgacccgcgc
     1501 atcgtgccgg acatgggcgt gcgcgtgagc ttcctcgaga aagcggcgcc ggcgcaggcg
     1561 cggcgcaggc cgggcgtgct ggtgccggcc gccgcggtgg ttgcgcgcgg cggcaggcag
     1621 gtggtgttcg tggtcgccga cgccaaggcc gacacgggcg tcgcgcggga gcgcgccgcc
     1681 accctcggcc gcacgctcgg cgacgaccgc gaggtgctgg acggcgtcgc cggtggcgat
     1741 gccgtggtgg tgaacccgcc ggaccggctg gccgacggcg cgcgggtgaa gatcgtgcgc
     1801 gacgacgccg gcgaaccggc cgacaacgag tgacgcctgg tcccgcacgg gcgggacgac
     1861 cgtacgacaa gcgcagtccg acgcaacttc aggagccccg catggccctc gtcagcatcc
     1921 gcaacctgca caagacctac cagcgcggcc ccgagcggat cgacgtgctg aacgggctcg
     1981 acctcgacat cgcccagggc gacttcgtcg cgctgatggg gccgtcgggc tcgggcaaga
     2041 ccacgctgct caacctgatc ggcggcctcg acacgccgag ctcgggcgag atcgaggtcg
     2101 gcggccagcg catcgaccgc cttacctccg gccagctcgc gcactggcgc agcaacaacg
     2161 tcggcttcgt gttccagttc tacaacctga tgccgaccct gaccgcgcag aagaacgtcg
     2221 agctgccgct gctgctgacc cggctgtcgt cggcgcagcg caggcgcaac gccgagatcg
     2281 cgctggaact ggtcggcctg aaggaccgcg cccgccaccg gccgagcgaa ctctccggcg
     2341 gccagcagca gcgcgtcgcg atcgcccgcg cgatcgtgtc cgatccgacc ctgctgatct
     2401 gcgacgagcc caccggcgac ctcgaccgcc agtcggcgga ggagatcctc acgctgctgc
     2461 aggaactcaa ccgcacccac ggcaagacca tcgtgatggt cacccacgac ccgaaggcgg
     2521 ccgagtacgc gacccacacc ctgcacctcg acaagggcaa cctggtcgag caggtccgca
     2581 ccgcggcgtg acgcacgcat gcccgctccg gccgcggccg gacgccgggt ccgaacacgg
     2641 cgtggcgctg cagccgcccg ccgagcacca ggagcagaca tgaagtacct gcacctcatc
     2701 tgggccgcgc tgttccgcag caagacccgc acgtcgctga ccctgctgtc ggtggtggcg
     2761 gcgttcctgc tgttcggcat gctcgactcc gtccgcgtcg ccttcaattc cggcggcagc
     2821 gtcgccggcg cgaaccgcct ggtcgtcgcc tcgcggctgt cgatcacgca gatgctgcct
     2881 tacagcctgc tgtcgcagat cgaagccacg ccgggcgtgc gcaaggcctc gtacgcggcg
     2941 tggttcggcg gcatctacca ggatccgaag aacttcttcc cgaacttctc gatcggcccg
     3001 ggctacctcg agatgttccc ggagttccag ctcccggccg cgcagcgcaa ggcctgggaa
     3061 gccgaccgca ccggcgcgct ggtcggcgaa tcgctggcca ggcgcttcgg ctggaagatc
     3121 ggcgacacca tcccgctgca ggcgacgatc ttcccgaccc agggcagcaa cgcctggtcg
     3181 ttccggctgg acggcatctt ccgcatcacc gaccccaagc ggcgcgcgca ggagaacgtg
     3241 ctgttcttcc actggaagta cttcgacgag gccaacgact acgtcaaggg ccgggtcggc
     3301 tggtacatgg tgcagctggc cagcgccagc gacgccgacc gcgtcgcgaa gtcgatcgac
     3361 gcgatcagcg ccaactccga ccacgaaacc aaggcgcaga ccgaggaagc cttcaaccag
     3421 gccttcgcca agcagttcgc cgacatcggc ctgatcgtca ccgcgatcat gggcgcggtg
     3481 ttcttcaccc tgctgctgct caccggcaac accatggcgc aggcggtgcg cgagcgcatc
     3541 cccgaactgg cggtgctgaa gacgatcggc ttcaccaacc gcagcgtgct gtggctggtg
     3601 ctggccgagt cggtgctgct gatcgtgctc ggcggcgcgc tcggcctcgg cctcgccgcg
     3661 gtgctgatgc cgatcgtcag cgccggcagc ggcggcctga tccagctgcc gagcgtgctg
     3721 ccgcagacct gggcgatggg cgtcggcctg atggtcgcga tcggcgtgct ggtcggcctg
     3781 ctgccggcgc tgcgcgcgat gcggctgagc atcgtcgacg cgctcgcgga acgataaggg
     3841 aggctccatg aagaagttct tcggcaacct cggcgtcgtg ttcgccctgg cgctcggcct
     3901 ggccgcgtgg atcgccctgc cgtggttcgc ggtgctcgcg ctcgcgctgc tggtcgcgct
     3961 gtggctgctg ctcacccgca gcggccggct tgcgctggcc gcggcgcgcg tgggcatcgc
     4021 cggcctgccg cagcgctggg gcgcgtccag cgtgatcgtg gtcggcatcg ccggcgtggt
     4081 cggcgtgctg gtggcgatgc tggcgatggg cgaggggttc aaggccacgc tcgaccgcac
     4141 cggcagcgac gccaccgcga tcatcctgcg cggcggttcg caggcggaaa ccaattcggt
     4201 gatcacccgc gaccaggtgc cgctggtgtc ctcgctcgcc ggcatcgccc gcgacgccgg
     4261 cggcaggccg gtggtctcgc ccgagctgtc gcaggtggtc aacctgacca gcaagagcga
     4321 cggcaccgac gccaacgtgc agttccgcgg cgtcggtccc gccggctggg cggtgcggcc
     4381 ggacctgagg atcgtcgaag gtcgcaagtt cgcccccggc ctgcgcgaac tggtcgccgg
     4441 gcgcggcgcg cagaagcagt tcgcgggcct ggaggtcggc cggcagctca agctcgccaa
     4501 ccagatgtgg accgtggtcg gcatcttcga ggccggcgat tcgcacgact ccgaactgtg
     4561 ggccgacgtc gacgtgctcg gccccgccta ccagcgccag gcgttccagt cggtgacggt
     4621 caagctcgcc ggaaaggacg ggttcaagca gctcaaggcc gcgctcgccg ccgacccgcg
     4681 cctcaagctc gacgtctcga ccacccacga ctactacgcc aggcagtccg agcagctgac
     4741 caagctgatc cggatcctcg gcaccgtgat cggcacgatc atggcgatcg gcgcggtgtt
     4801 cggcgcgctc aacaccatgt atgcggcggt cgccggccgc gcgcgcgaga tcgcgacgct
     4861 gcgcgcgctc ggcttccgcg gcctgccggt ggtggtgtcg gtgatgctgg agacgatgct
     4921 gctcgcgctc gccggcggcc tgctcggcgc cggcatcgct tgggcggtgt tcaacggcta
     4981 cacggtgagc acgctgggca acaacttcag ccaggtcgt
//
LOCUS       DATIQC010000376         3320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_236386, whole genome shotgun sequence.
ACCESSION   DATIQC010000376 DATIQC010000000
VERSION     DATIQC010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236386"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1061)
                     /locus_tag="VLM17_08070"
     CDS             complement(<1..1061)
                     /locus_tag="VLM17_08070"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003476649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSR65539.1"
                     /translation="MTDPAADPAAQSLDTDVLVVGGGPAGSTAAALLARRGWKVLLLE
                     KARHPRFHIGESLLPMNMPILQRLGVFEQVREIGVLKLGADFPVEGRDYNVFKFDRTL
                     RPGAGHAFQVKREEFDQLLFEHARTEGVDAREGVKVESVEFDAGGRPRVAHARDAEGR
                     ALQVRMRFLLDASGRDTLLGAQLKLKQKNPRHASAAIFSHYEGVVRRDGDDAGNVTIC
                     RHEHGWIWLIPLREGVTSVGAVCAPEYLKQRRGESEAFLQRTLESVPDVAVRMQDARR
                     VAPVHVTGNYAYECTRMHGPGWLLLGDAYSFVDPMFSSGVFLAMNSAERGAATVDAAL
                     REPAREATLLRALQRHLDAG"
     gene            1186..1455
                     /locus_tag="VLM17_08075"
     CDS             1186..1455
                     /locus_tag="VLM17_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HSR65540.1"
                     /translation="MSPQTDAERELAQLLVESLNLEDVAPESIDPEAPLFNAGLGLDS
                     IDALELALAISKRHGFQLRSDNDENRRIFGSLRALSAHVQQHRTA"
     gene            1430..2161
                     /locus_tag="VLM17_08080"
     CDS             1430..2161
                     /locus_tag="VLM17_08080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ketosynthase"
                     /protein_id="HSR65541.1"
                     /translation="MSSSTAPPEAAATGGHRAALLRVALVVAYFVLAHVAGVRHAPAL
                     AALASGDIVAIGLLSPLLAGRAWAWAALALCAWGLFRLAAGAHAFLPLLLVPVAILSL
                     VGWSFARTLRPGREPLITRIVGALDGVPPAQLAPELRRYTRTLTRLWALLLGTLALLN
                     LVLAALAVPNGLLAGFGIAPPLAVSAAQWSWIANVGNYGLLAGFMLLEFRGRQRRFPG
                     RYHGFFDFLRRMGRLGPGFWANLFR"
     gene            2235..2531
                     /locus_tag="VLM17_08085"
     CDS             2235..2531
                     /locus_tag="VLM17_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65542.1"
                     /translation="MRFSIPSDHPSLPGHFPGRPVVPGVVVLDQVLAAIEATHGALPP
                     LRLPQVKFVQPLLPGEEAEVVLDAQPDARRWRFRVLRGAALLASGEIAAAGAAA"
     gene            2528..>3320
                     /locus_tag="VLM17_08090"
     CDS             2528..>3320
                     /locus_tag="VLM17_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011270080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HSR65543.1"
                     /translation="MSHWKQRPEGGGWFAIWLIRSIGRHGGRGVARALLYPITLYFLV
                     RRGPERRQSRAWLLHALGRPPRLWDIARHIHTFASTILDRVFLLSENTRRFEVAVHGV
                     EALHAQLDRGGVLLFGSHLGSFEVLRVLAQQRPDYSIRVVLDKQHNVAMQTLLDALNP
                     TLARNIIDAGQEGPALMLEIQQAVQAGALVALLVDRAQPGGHTVAAPFFGRDAQFPSA
                     PWLIAALLKVPVALGFGLYRGGNRYELLFECFTDAVDMPRAQRRTM"
BASE COUNT          377 a         1223 c         1221 g          499 t
ORIGIN      
        1 cccgcgtcga ggtggcgctg cagcgcgcgc agcagcgtcg cctcgcgcgc cggctcgcgc
       61 agcgcggcgt cgacggtggc ggcgccgcgc tcggcgctgt tcatggcgag gaacacgccg
      121 gaggagaaca tcgggtcgac gaaggaatac gcgtcgccca gcagcagcca gccggggccg
      181 tgcatgcgcg tgcattcgta ggcgtagttg ccggtgacgt gcaccggcgc cacgcggcgc
      241 gcgtcctgca tgcgcacggc cacgtcgggc accgactcca gcgtgcgctg caggaacgcc
      301 tcgctctcgc cgcggcgctg cttgaggtac tccggcgcgc acaccgcgcc gacgctggtc
      361 acgccttcgc gcagcgggat cagccagatc cagccgtgct cgtgccggca gatggtgacg
      421 ttgccggcgt cgtcgccgtc gcggcggacc accccttcgt agtggctgaa gatcgccgcc
      481 gaggcgtggc gggggttctt ctgcttgagc ttgagctgcg cgccgagcag ggtgtcgcgg
      541 ccgctggcgt cgagcaggaa gcgcatgcgc acctgcagcg cgcggccttc cgcgtcgcgc
      601 gcatgcgcca cgcgcgggcg gccgccggcg tcgaactcga ccgattcgac cttgaccccc
      661 tcgcgcgcgt ccacgccctc ggtgcgcgcg tgctcgaaca gcagctggtc gaattcctcg
      721 cgcttgacct ggaaggcgtg gcccgcgccc gggcgcaggg tgcggtcgaa cttgaacacg
      781 ttgtagtcgc ggccctcgac cgggaagtcg gcgccgagct tgagcacgcc gatctcccgc
      841 acctgctcga acacgccgag ccgctgcagg atcggcatgt tcatcggcag cagggactcg
      901 ccgatgtgga agcgcgggtg gcgcgccttc tcgagcagca gcaccttcca gccgcggcgg
      961 gcgagcaggg ccgccgcggt cgatccggcc gggccgccgc cgaccaccag cacgtcggta
     1021 tcgagggatt gcgcggcggg gtcggcggca gggtcggtca tgctgaatgc gtgccttggc
     1081 gctgaagggc ggcgtgcatg atagccgcgg gcgcgcgccg agttgcgcgc cgccgcgcga
     1141 tgccggatcg ttgcgccctt cgccaacctt gcattggaag ccccgatgtc cccgcagacc
     1201 gacgccgaac gcgaactcgc ccagctgctc gtcgagagcc tcaacctcga ggacgtggcg
     1261 cccgagtcga tcgatccgga ggcgccgctg ttcaacgccg gcctggggct ggactcgatc
     1321 gacgcgctgg aactggcgct ggcgatcagc aagcgccacg gcttccagct gcgctcggac
     1381 aacgacgaga accgcaggat cttcggctcg ctgcgcgcgc tgtcggcgca tgtccagcag
     1441 caccgcaccg cctgaggccg ccgcgaccgg cgggcaccgc gccgccctcc tgcgggtggc
     1501 gctggtggtc gcgtacttcg tgctcgcgca cgttgccggc gtccgccacg ccccggcgct
     1561 ggcggcgctc gccagcggcg acatcgtcgc gatcgggctg ctgtcgccgc tgctcgccgg
     1621 gcgcgcgtgg gcgtgggccg cgctggcgct gtgcgcgtgg gggctgttcc ggctggccgc
     1681 gggcgcgcac gccttcctgc cgctgctgct ggtgccggtg gcgatcctgt cgctggtcgg
     1741 ctggagcttc gcgcgcaccc tgcggccggg ccgggagccg ctgatcaccc gcatcgtggg
     1801 cgcgctcgac ggcgtgccgc cggcccagct ggcgcccgag ctgcgccgct acacgcgcac
     1861 gctcacgcgg ctgtgggcgc tgctgctcgg cacgctcgcc ctgctcaacc tcgtcctcgc
     1921 ggcgctggcg gtgcccaacg gcctgctcgc cggcttcggc atcgcaccgc cgctggcggt
     1981 gagcgcggcg cagtggtcgt ggatcgccaa cgtcggcaac tacggcctgc tcgccggctt
     2041 catgctgctg gagttccgcg gccggcagcg gcgcttcccg ggccgctacc acggcttctt
     2101 cgacttcctg cggcggatgg ggcggctcgg cccggggttc tgggccaacc tgttccgctg
     2161 agcggttcag cctggcgcgg cttgcgccgg cgccggccgc cccgcatcct tgcgcgctgc
     2221 agggggcgtg ttgcatgcgg ttctcgattc cttccgatca tcccagcctg ccgggccact
     2281 tcccaggccg gccggtcgtg cccggcgtgg tcgtgctcga ccaggtcctc gccgcgatcg
     2341 aggcgaccca cggcgcgctg ccgccgttgc gcctgccgca ggtgaagttc gtgcagccgc
     2401 tgctgcccgg cgaggaagcc gaggtcgtgc tcgatgcgca gcccgacgcg cgccgctggc
     2461 gcttccgcgt gctgcgcggc gcggcgctgc tggcgagcgg cgagatcgcc gcggccgggg
     2521 cggccgcatg agccactgga agcagcgccc cgagggcggc ggctggttcg cgatctggtt
     2581 gatccgctcg atcggccgcc acggcgggcg cggcgtggcg cgcgcgctgc tgtacccgat
     2641 caccctctat ttcctcgtcc ggcgcggccc ggagcggcgg cagtcgcgcg cctggctgct
     2701 gcacgcgctg ggccggccgc cgcggctgtg ggacatcgcc cgccacatcc acaccttcgc
     2761 ttcgaccatc ctcgaccggg tgttcctgct cagcgagaac acccgccgtt tcgaggtcgc
     2821 ggtgcacggc gtggaggcgc tgcacgccca gctcgaccgt ggcggcgtgc tgctgttcgg
     2881 ctcgcacctg ggcagcttcg aggtgctgcg cgtgctcgcc cagcagcgcc cggactacag
     2941 catccgcgtg gtgctcgaca agcagcacaa cgtggcgatg cagaccctgc tcgacgcgct
     3001 caacccgacg ctcgcgcgca acatcatcga tgccggccag gagggcccgg cgctgatgct
     3061 ggagatccag caggcggtgc aggccggcgc gctggtcgcg ctgctggtcg atcgcgcgca
     3121 gccgggcggg cacaccgtgg cggcgccgtt cttcggccgc gacgcgcagt tcccgagcgc
     3181 gccgtggctg atcgcggcgc tgctcaaggt gccggtcgcg ctcggcttcg gcctgtaccg
     3241 cggcggcaac cgctacgagc tgctgttcga gtgcttcacc gacgcggtcg acatgccgcg
     3301 cgcccagcgc cgcacgatgg
//
LOCUS       DATIQC010000377         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_590213, whole genome shotgun sequence.
ACCESSION   DATIQC010000377 DATIQC010000000
VERSION     DATIQC010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590213"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..752
                     /locus_tag="VLM17_08095"
     CDS             153..752
                     /locus_tag="VLM17_08095"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HSR65544.1"
                     /translation="MIDPDGYRPNVGIVLMRPDGQVFWARRVRRDGWQFPQGGMNTDE
                     TPLEAMYRELREETGLLPEHVAVLGVTPGWLRYRLPQRAIRRHDRLVCIGQKQVWFLL
                     QFTGTDTDLRLDLTDKPEFDHWRWVDFWYPLEHVVTFKRGVYASALRHLAPFARQIAG
                     QQAVPAPAAEAWPRLGSRQRPQRGRSRLRAEAAKPVADG"
     gene            814..1017
                     /locus_tag="VLM17_08100"
     CDS             814..1017
                     /locus_tag="VLM17_08100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HSR65545.1"
                     /translation="MYVCLCNGVTERQIREVAEAGCRTLPELTMRTGCGATCGSCLPM
                     AQALLDEVHAAHELPLPLLSDAA"
     gene            1108..1578
                     /gene="bfr"
                     /locus_tag="VLM17_08105"
     CDS             1108..1578
                     /gene="bfr"
                     /locus_tag="VLM17_08105"
                     /EC_number="1.16.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HSR65546.1"
                     /translation="MRGDAKVIEFLNKALFNELTAINQYFLHARMLKNWGLKELAEHE
                     YKESIDEMKHADRLAERILFLEGLPNFQALGKLRIGENPRELLECDLALELEALPPLR
                     AAIAHCEGVGDAVSRKLFIDILASEEEHIDWIETQLALIARIGEQNYLLTKIEE"
     gene            complement(1603..>2455)
                     /locus_tag="VLM17_08110"
     CDS             complement(1603..>2455)
                     /locus_tag="VLM17_08110"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR65547.1"
                     /translation="VNLMVGQRLLNVLGVDCDTAHNGDVALLRMASNRYDLVLMDCQM
                     PVMDGYTATRRWRENEGATGDGQHLPIVAMTANAMAGDRQKCLDAGMDDYLAKPVTRA
                     ELERCLHRWWRPRRAATGGTPDETVAEPAPEAATPAAHAAADAMAAAEVAAASAGDTA
                     VPADAHRGVLDLEVVSELRLVLGDEMERLVMVFLDEVPQQIIQLEAAALGPDYAMLRE
                     VAHSLKSASANLGAMALSAAAKRVELGARMQTLDRPAVAVTLVAREFERAREALLAAV
                     RERAVSA"
BASE COUNT          367 a          848 c          876 g          364 t
ORIGIN      
        1 gggccgcgcg tggtgcaggg cgcggcgaac cgcgaattgt ccatgtcgcg cccgcctgcg
       61 tcaattgcgg gcgaagacga cgcgcgtgcc gtgcttgtcc cgtcaccggg cgcgtggcag
      121 agtcggacgc agtgcattac ggagtccgca tcgtgatcga tccggacggt taccgaccca
      181 acgtcggcat cgtgctgatg cgtcccgacg gccaggtgtt ctgggcgcgg cgggtgcggc
      241 gcgatggctg gcagttcccg cagggcggga tgaacaccga cgagacgccg ctcgaggcga
      301 tgtaccgcga gctgcgcgag gagaccgggc tgctgcccga gcacgtcgcc gtgctcgggg
      361 tcacccccgg ctggctgcgc tatcggctgc cgcaacgggc gatccgccgg cacgaccggc
      421 tggtctgcat cggccagaag caggtgtggt tcctgctgca gttcaccgga accgataccg
      481 accttcgcct cgacctgacc gacaagcccg agttcgacca ctggcgctgg gtcgacttct
      541 ggtacccgct cgagcacgtg gtgacgttca agcgcggcgt gtacgccagc gccctgcgcc
      601 acctggcgcc cttcgcgcgg cagatcgccg ggcagcaggc ggttccggcg cccgcggccg
      661 aggcgtggcc gcggctggga tcgcgccagc gaccgcagcg cgggcggagc cggctgcgcg
      721 cggaggcggc caagccggtc gcggacggct gacgttaatt gacaatcatt ctcatctaga
      781 cggacaatgc gggcctcttt ggggggtccg cacgtgtacg tctgcctctg caacggtgtc
      841 accgagcgcc agatccgcga ggtcgcggaa gccggttgcc gcaccctgcc ggaactgacc
      901 atgcgcaccg gctgcggcgc gacctgcggc tcctgcctgc cgatggcgca ggcgctgctg
      961 gacgaggtcc acgcggcgca cgaactgccg ctgccgctgt tgtccgacgc ggcctgaggc
     1021 cgcgtccttc gccgtccctt cggaattcgc gccggcgctg gacggcggcg ctagagtgcg
     1081 ccttcctccc gcgcaaggaa gtcggccatg cgaggcgacg ccaaggtcat cgaattcctc
     1141 aacaaggcgc tcttcaacga gctgaccgcg atcaaccagt acttcctgca cgccaggatg
     1201 ctgaagaact ggggcctgaa ggaactcgcc gagcacgagt acaaggaatc gatcgacgag
     1261 atgaagcacg ccgaccgcct cgccgaacgc atcctgttcc tcgaggggct gccgaacttc
     1321 caggcgctcg ggaaactgcg gatcggcgag aacccgcgcg aactgctcga atgcgacctg
     1381 gcgctggaac tggaggcgtt gccgccgttg cgcgcggcga tcgcgcactg cgaaggggtc
     1441 ggcgatgcgg tcagccgcaa gctcttcatc gacatcctcg cgtccgagga agagcacatc
     1501 gactggatcg agacgcagct ggcgctgatt gcccggatcg gcgagcagaa ctacctgctg
     1561 acgaaaatcg aggaatgagg acggcggcga tgcgggatcg gcctaggccg acaccgcacg
     1621 ctcgcgcacg gcggccagca gcgcctcgcg ggcgcgctcg aattcgcgcg cgaccagcgt
     1681 caccgccacc gccggccggt ccagcgtctg catgcgcgcg ccgagctcga cccgcttggc
     1741 ggccgccgac agcgccatcg cgccgaggtt ggcgctggcc gacttcagcg agtgggcgac
     1801 ctcgcgcagc atggcgtagt cgggaccgag cgcggccgcc tcgagctgga tgatctgctg
     1861 cggcacctcg tcgaggaaca ccatcaccag ccgttccatc tcgtcgccga gcacgagccg
     1921 caattcggaa accacttcca ggtcgagcac gccgcggtgg gcgtcggccg ggacggcggt
     1981 gtccccggcg ctggccgccg cgacctccgc cgccgccatt gcgtcggctg cggcgtgggc
     2041 ggcgggcgtc gcggcctcgg gcgcaggttc ggcgaccgtt tcgtccggcg tcccgccggt
     2101 cgcggcgcgg cgcggccgcc accagcgatg caggcagcgc tcgagttcgg cgcgggtgac
     2161 cggcttggcg aggtagtcgt ccatgccggc gtcgaggcac ttctggcggt cgcccgccat
     2221 cgcgttggcg gtcatcgcca cgatcggcag gtgctggccg tcgccggtcg ccccctcgtt
     2281 ctcgcgccag cgccgggtgg cggtatagcc gtccatcacc ggcatctggc agtccatgag
     2341 caccaggtcg tagcggttgg aggccatgcg cagcagggcg acgtcgccgt tgtgggcggt
     2401 gtcgcaatcc acgccgagca cgttgagcag gcgctggccg accatcaggt tgacc
//
LOCUS       DATIQC010000378         2848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_165947, whole genome shotgun sequence.
ACCESSION   DATIQC010000378 DATIQC010000000
VERSION     DATIQC010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165947"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..230)
                     /locus_tag="VLM17_08115"
     CDS             complement(<1..230)
                     /locus_tag="VLM17_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003470976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CD225/dispanin family protein"
                     /protein_id="HSR65548.1"
                     /translation="MNTTREYVPNNLVWAILATLLCCLPLGIVSIVFAAKVDGLVAAG
                     DVPAARRAADLARNWAIAAALSGPVLVVAWIM"
     gene            complement(286..2196)
                     /locus_tag="VLM17_08120"
     CDS             complement(286..2196)
                     /locus_tag="VLM17_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR65549.1"
                     /translation="MAQGLGHSQFALLGQRRFGPFFATQLLGAFNDNVFRNATIVLVT
                     SQLGLSTQQAGLYTNLAPGLFILPFFLFSALAGQLAEKHEKARLVRWIKLFEIAAMAV
                     AAWGFFAHHALLLMVVLFLMGVHSTLFGPIKYSILPQALHPHELVGGNGLVESGTALA
                     ILCGMMLGGGLMLSPGQGPLLASIAVLAIALAGYLASRAIPAAPATAPDLRIDWNLFT
                     ATWRTVARCTRQRAVWNSVLGISWFWFFGTALTAQLPVYAEVNLGGGSALFLLALGVF
                     SVGTGIGSLLCEKLSGRTVEIGLVPLGAFGISACALDLYFARPGAAPVPGLSLAAFLH
                     APGSLRILADLAGVGLFGGFFLVPLFALVQERTPKAELSRVIAGNNILNALFIVAAAL
                     CGVAAQQLLHWSIPRFLLALAVANALVAAYIFTLVPEFLMRFLSWLLVRSLYRLRVQG
                     VAEQVPDEGAALLVCNHVSYMDALILSASIPRPVRFVMYYRIFDIPVLRWIFRTAKAI
                     PIAGAREDPALMQRAFDAIDAALADGELVCIFPEGALTKDGQIASFKSGVERILERAR
                     DAGRPVPVVPLALRGMWSSMWSRRDGRLGRARLPRRFRAHVEVVGAEALTAAKSAEAL
                     EARVRALRGAAA"
     gene            complement(2292..>2848)
                     /locus_tag="VLM17_08125"
     CDS             complement(2292..>2848)
                     /locus_tag="VLM17_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009573931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylglycinamide synthetase C
                     domain-containing protein"
                     /protein_id="HSR65550.1"
                     /translation="ARVMREVVEPTVRGMAADGVPFTGFLYAGLMIDASGAPKVIEFN
                     VRFGDPETQPVMLRLQSDLVDLVEAAIGGHLADVQARWDPRPSLGVVMAAENYPATPR
                     TGDAISGWDVPDVPGTKVFHAGTKLEGDHVVTAGGRVLCVCALGDSVADAQQRAYAEV
                     AGISWRGEFHRHDIGWRAIERERG"
BASE COUNT          480 a         1050 c          976 g          342 t
ORIGIN      
        1 aacatgatcc acgcgacgac cagcaccggc cccgacagcg ccgcggcgat cgcccagttg
       61 cgggcgagat cggccgcgcg tcgcgccgcc gggacgtcgc cggcggcgac caggccatcg
      121 accttggccg cgaagacgat cgacacgatg cccagcggca ggcagcacag cagcgtggcg
      181 aggatcgccc acaccaggtt gttcggcacg tattcgcgcg tcgtgttcat gcgtcccctt
      241 gcgtgatctt cggccgatgg ccgccccgcc ggcatcctag cagcgtcagg cggcggcgcc
      301 gcgcagcgcg cgcacccgtg cctcgagcgc ttcggccgac ttcgccgcgg tgagcgcctc
      361 cgcgccgacc acctcgacgt gcgcgcggaa gcgccgcggc aggcgcgcgc gccccagcct
      421 gccatcgcgc cggctccaca tgctcgacca catcccgcgc agcgccagcg gcaccaccgg
      481 caccggccgg cccgcgtcgc gcgcgcgctc gaggatgcgt tccacgcccg acttgaacga
      541 ggcgatctgc ccgtccttcg tcagggcgcc ttccgggaag atgcacacca gttcgccatc
      601 cgccagcgcc gcatcgatcg cgtcgaacgc gcgctgcatc agcgccgggt cctccctcgc
      661 gccggcgatc gggatggcct tggcggtgcg gaagatccag cgcagcaccg ggatgtcgaa
      721 gatcctgtag tacatgacga agcgcaccgg ccgcgggatg ctcgcgctca ggatcagcgc
      781 gtccatgtag ctgacgtggt tgcacacgag cagcgccgcc ccctcgtcgg gaacctgctc
      841 cgcgacaccc tgcacgcgca gccgatacag cgagcgcacc agcagccagc tgaggaagcg
      901 catcaggaac tcgggcacca gcgtgaagat gtaagccgcg accagcgcat tggcgaccgc
      961 cagcgcgagc aggaagcgcg ggatcgacca gtgcagcagc tgctgcgcgg ccaccccgca
     1021 cagcgccgcg gcgacgatga acagcgcgtt gaggatgttg ttgccggcga tgacgcgcga
     1081 cagctccgcc ttcggcgtgc gttcctgcac cagcgcgaac agcggcacca ggaagaaccc
     1141 gccgaacagg ccgacgccgg cgaggtcggc gaggatgcgc agactgcccg gcgcgtgcag
     1201 gaacgcggcc agcgacagcc ccggcaccgg cgccgcgccc ggccgcgcga agtacaggtc
     1261 cagcgcgcag gcgctgatgc cgaaggcacc gagcggcacc agcccgatct cgaccgtgcg
     1321 cccggagagc ttctcgcaca gcagcgagcc gatgccggtg cccaccgaga acacccccag
     1381 cgcgagcagg aacagcgcgc tgccgccgcc gaggttgacc tccgcgtaca ccggcagctg
     1441 cgcggtcagc gcggtgccga agaaccagaa ccaggagatg ccgagcaccg agttccacac
     1501 cgcgcgctgg cgcgtgcagc gcgcgaccgt gcgccaggtc gcggtgaaga ggttccagtc
     1561 gatgcgcagg tccggcgcgg tggccggggc ggcgggaatc gcgcggctcg cgaggtagcc
     1621 ggcgagcgcg atcgcgagca ccgcgatcga ggccagcaac ggtccctggc ccggcgacag
     1681 catcagtcca ccgccgagca tcatcccgca caggatcgcc agcgcggtgc cgctttcgac
     1741 caggccgttg ccgccgacca gttcgtgcgg gtgcagcgcc tgcggcagga tcgagtactt
     1801 gatcgggccg aacagggtgg agtgcacgcc catcaggaac agcaccacca tcagcagcag
     1861 cgcatggtgg gcgaagaaac cccacgccgc gaccgccatc gccgcgatct cgaacagctt
     1921 gatccagcgg accagccgcg ccttctcgtg cttctcggcc agctggccgg cgagcgccga
     1981 gaacaggaag aacggcagga tgaacagccc cggcgcgagg ttggtgtaga gcccggcctg
     2041 ctgcgtcgac aggccgagct gcgacgtcac caatacgatc gtcgcgttgc ggaacacgtt
     2101 gtcgttgaac gcgcccagca gttgggtcgc gaagaacggc ccgaaccggc gctgcccgag
     2161 cagcgcgaac tgcgaatgcc ccaacccctg cgccatgcat ccccctgcgt gtgcgcggcg
     2221 agcctagcag agggccgcgg ccagcgccgc gtgcagccgg cagcctggaa tcggtccacc
     2281 ggcgcggtca ctcaaccgcg ctcgcgttcg atcgcccgcc agccgatatc gtggcggtgg
     2341 aactcgccac gccaggagat gccggcgact tcggcgtagg cgcgctgctg cgcatcggcc
     2401 accgaatcgc ccagggcgca cacgcacagc acgcggccgc cggcggtgac gacgtggtcg
     2461 ccctccagct tcgtgccggc gtggaagacc ttggtgccgg gcacgtcggg gacgtcccag
     2521 ccgctgatcg cgtcgccggt gcgcggcgtg gcgggatagt tttccgccgc catcaccacg
     2581 ccgaggctgg gccgcggatc ccatcgggcc tgtacgtcgg cgaggtggcc gccgatcgcc
     2641 gcttccacca ggtcgaccag gtccgattgc aggcgcagca tcaccggctg cgtctccgga
     2701 tcgccgaaac gcacgttgaa ctcgatgacc ttcggcgcgc cggaggcatc gatcatcagc
     2761 ccggcgtaca ggaaaccggt gaacggcacg ccgtcggcgg ccatcccgcg cacggtgggc
     2821 tcgacgacct cgcgcatcac ccgcgcgt
//
LOCUS       DATIQC010000379         6839 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_661126, whole genome shotgun sequence.
ACCESSION   DATIQC010000379 DATIQC010000000
VERSION     DATIQC010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6839
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661126"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1413)
                     /locus_tag="VLM17_08130"
     CDS             complement(<1..1413)
                     /locus_tag="VLM17_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012509865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-synthetase adenylyltransferase"
                     /protein_id="HSR65551.1"
                     /translation="MTALPAELAALADRAVQRMRATSPDAGALLDAPPARQRLAQVAV
                     ASDFAISVLARQPGLLRQLDEGAAGPAAPVLDAGNRADWGVLLRRHRLAASTRLVWRD
                     VVGLDDVAATLAGSTRLAEQCLQLALAALEAEFAQRHGVVRAADGSVQRLVVFGLGKL
                     GGGELNFSSDVDLVYAYEQAGESDGPRPLAAEDYFARLGQQLAKLLDEVTAEGFSHRV
                     DLRLRPFGSAGRLALSFAAMEQYFQREGRDWERYAWQKARPVAGDVAAGERLLATLRP
                     FVYRRYLDYGALDGLREMKAAIAAEVARRELADDIKRGPGGIREIEFLVQALQLIRGG
                     REPALRGRRLLPALQALVDAGHVADAAGEALGEAYLFLRRLENRLQMLRDAQTHVLPE
                     DALDRARIAHGLGYEDWSALRAALDLQRARVAGEFEALLAPRRRSAPAGALAGYWRAL
                     PEGDADALAAAGFGDAGAAHA"
     gene            complement(1512..2924)
                     /locus_tag="VLM17_08135"
     CDS             complement(1512..2924)
                     /locus_tag="VLM17_08135"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HSR65552.1"
                     /translation="MPTLAKAIAIALASFAAVSTAHATTYIVSANTLSFDNALAHKIE
                     AAGGTVTARLPQIGVAVVESADTGFAARAAKVPGIRSAVYDYAFQSEQPEATGGIEPD
                     YGNPPASGDNDAFFNLQWGAQAIDVAGAWTQGYRGAGATVAVLDAGIACRHLDLASQI
                     LPDSASFVAGEGVCLGRNGIFNHGSHVAGIIAAADNGVGTIGVAPDARILAVKVLSET
                     TGSGSFAAIIQGIVYAADHGADVINMSLGVHGGLPVNGKGANDVSELVNATKRAVDYA
                     RTRNALTIVAAGNDGFDLDHMSGVKICDSNGSCYVANLKAFPAELPNVLSISATAPVG
                     WAKAPASTFLDNLTSYSNYGSSAIAFGGPGGDTAYPGSENCTMAGIVRPCWVFDLVFA
                     PGGYSASGGSSYSWAAGTSMAAPHVAGVAALIIGKHGGTMAPAEVERILRASADDLGK
                     PGNDPAYGSGRVNASRAVQL"
     gene            complement(3211..4833)
                     /locus_tag="VLM17_08140"
     CDS             complement(3211..4833)
                     /locus_tag="VLM17_08140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HSR65553.1"
                     /translation="MRNHEHDDVLLIGGGHNGLVCAAYLARAGLRVRVLERRAVLGGA
                     AVTEEFHPGFRNSTASYTVSLLHRAVIEDLHLHAHGLRIVERPYANFLPLPDGRAFRF
                     GGGYTQAEAARWSQRDADRLPAYSAMLERVVALVRALAVRTPPNVSDRFVLADWLASA
                     SVARQLRGFDLAGKRDLLDLFTKSAGELLDHWFEGEPLKAVLGWDAVVGNFASPYTPG
                     SAYVLLHHVFGEVNGKAGAWGHAIGGMGAISDAIAAECRARGVALETGAAVEELLVDG
                     GRASGVRLRDGRSLRAGTVVANVNPKLLYQRLVPRGALDADTVERIDRYRCGSGTFRM
                     NVALAELPDFGAAPGTGLQPHHQSGILVGPSLRYFEQAYFDAKSRAHNPGWARAPIVE
                     VVISSSLDDTLAPPGHHVASLFCQHVNPVLEDGGWDAHRETVAQLMLDTVDAVAPNFR
                     RSVLGYRALSPLDLEREFGLVGGDIFHGALGLDQLFGARPLLGQGNYRGAVPGLYLCG
                     AGTHPGGGVSGLPGRNAAREVLRDLRRGPRPR"
     gene            complement(4882..5553)
                     /locus_tag="VLM17_08145"
     CDS             complement(4882..5553)
                     /locus_tag="VLM17_08145"
                     /inference="COORDINATES: protein motif:HMM:NF021230.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TorF family putative porin"
                     /protein_id="HSR65554.1"
                     /translation="MVAACGLLLFATAARAQASASIALVSDDRYRGVSLSDGDPALQL
                     AAGFDADAGGYVGAFASTARLYGRDMLRWVGYAGWAGRFGNGASWDIGAQYTRFSAAS
                     GDGYPELYAGLAGERLGVRLAYARGYFGGGDALYTSLDAQQPLSRRLRLLAHAGWLHP
                     ARGADAPSAYDARLGVGLQAAGFDLQLARTFLRGGGAEYGPAAYPLGRDATGDAWVVG
                     VTRRW"
     gene            complement(5575..>6839)
                     /locus_tag="VLM17_08150"
     CDS             complement(5575..>6839)
                     /locus_tag="VLM17_08150"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HSR65555.1"
                     /translation="PALRMPCARMLCAFALWVLAGVCHAAGPAAPSQVLLMLRTPPPH
                     FRPDSAYLGTPYRDAPGHAARRRIARALGQAQGLRLQDDWPMPALHVDCFVLQAPDAA
                     AAGRAVQALARDPRVESVEPMQEFRVLADGAPGVDPLAAAQPVTRAWHLPQLQALATG
                     RGVRVAVIDSGVAALHPDLRGQVETARNFVDARREVGEAHGTAVAGIIAARAGDGIGI
                     AGIAPGARLLALRACWQQDAAHAACNSFTLAKALQFAIDARAQVLNLSLTGPRDRLLA
                     RLLEVALADGTSVVGAVDAQAGDGGFPASHPGVLAVAGGDGRASAAAQVLAPADGVPA
                     PLPGGGWGLVSGNSFAAAEVSGLVALLRQLDPALDGAGVHAALRPAGVGSASKRPWPI
                     DPCAVASRLGHCACTCVVAEDARPMPRR"
BASE COUNT          938 a         2524 c         2550 g          827 t
ORIGIN      
        1 cgcgtgggcg gcgccggcat cgccgaagcc ggccgcggcc agcgcgtcgg cgtcgccttc
       61 cggcagcgcg cgccagtagc cggcgagcgc accggcgggc gcgctgcgcc ggcggggcgc
      121 cagcagcgcc tcgaattcgc cggccacgcg cgcgcgctgc aggtcgagcg ccgcgcgcag
      181 cgcgctccag tcctcgtagc cgaggccatg ggcgatgcgc gcgcgatcga gggcgtcctc
      241 cggcaacacg tgcgtctgcg cgtcacgcag catctgcagg cggttctcca gccggcgcag
      301 gaacaggtag gcctcgccca gggcctcgcc cgccgcgtcc gcgacgtggc cggcatcgac
      361 cagcgcctgc agcgcgggca gcaggcgtcg cccgcgcagc gcgggctcgc ggccgccgcg
      421 gatcagctgc aacgcctgca ccaggaattc gatctcgcgg atgccgccgg ggccgcgctt
      481 gatgtcgtcg gcgagttcgc gccgcgcgac ttcggccgcg atcgccgcct tcatctcgcg
      541 caggccgtcg agcgcgccgt agtcgaggta gcggcgatag acgaacggcc gcagcgtcgc
      601 cagcagccgt tcgccggccg cgacgtcgcc ggccaccggg cgcgccttct gccacgcgta
      661 gcgctcccag tcgcggcctt cgcgctggaa atactgctcc atcgcggcga acgacagcgc
      721 cagccggccg gcgctgccga acgggcgcag gcgcaggtcg acgcggtggc tgaacccctc
      781 cgcggtgacc tcgtcgagca gcttcgccag ctgctggccg aggcgggcga agtaatcctc
      841 ggcggcgagc gggcgcggcc cgtccgattc gccggcctgc tcgtaggcat agacgaggtc
      901 gacgtcggag gaaaaattca gttcgccgcc gccgagcttg ccgagcccga acaccaccag
      961 ccgctgcacg ctgccgtcgg cggcgcgcac gacgccgtgg cgctgcgcga actcggcttc
     1021 cagcgcggcg agcgcgagct gcaggcattg ctcggccagc cgcgtgctgc cggcgagcgt
     1081 cgcggccacg tcgtccagcc ctacgacatc gcgccagacc agtcgcgtcg aggccgccag
     1141 gcgatggcgg cgcagcagca cgccccagtc ggctcggttg ccggcatcga gcacgggcgc
     1201 cgccggcccg gctgctccct cgtccagctg ccgcagcagt cccggctgcc gcgccagcac
     1261 cgagatggcg aagtcgctgg ccacggcgac ctgcgcgagc cgctggcgtg ccggcggcgc
     1321 gtcgagcagc gcgccggcat cgggcgaagt cgcgcgcatg cgctgcacgg cgcgatcggc
     1381 cagcgcggcg agttcggcgg gaagcgcggt catgcccgga ttctggcacg cgccacccct
     1441 tgccgatggc ggcccgcgcc cgcaaaaaaa cggccgcccg aaggcggccg tcgtggtccc
     1501 gaagcctggg cctacaactg caccgcgcgc gaagcgttga cgcggccgct gccgtaggcc
     1561 ggatcgttgc ccggcttgcc gaggtcgtcg gcgctcgcgc gcaggatgcg ctcgacttcc
     1621 gccggcgcca tcgtgccgcc gtgcttgccg atgatcagcg cggccacgcc cgccacgtgc
     1681 ggcgcggcca tgctggtgcc ggcggcccag ctgtaggacg acccgccgct cgccgaatac
     1741 ccgcccggcg cgaacaccag gtcgaacacc cagcacggcc gcacgatgcc ggccatcgtg
     1801 cagttctcgc tgcccgggta cgcggtgtcg ccaccgggcc cgccgaacgc gatcgcggag
     1861 ctgccgtagt tggagtagct cgtcaggttg tcgaggaagg tggacgccgg cgccttcgcc
     1921 cagcccaccg gcgcggtggc cgagatcgac agcacgttcg gcagttcggc cgggaacgcc
     1981 ttgaggttgg cgacgtagca gctgccgttg ctgtcgcaga tcttgacgcc gctcatgtgg
     2041 tcgaggtcga agccgtcgtt gccagcggcg acgatggtca gcgcgttgcg cgtgcgcgcg
     2101 tagtcgacgg cgcgcttggt cgcgttgacc agctcggaca cgtcgttggc gcccttgccg
     2161 ttgaccggca ggccgccgtg cacgcccagg ctcatgttga tgacgtcggc gccgtggtcg
     2221 gcggcgtaga cgatgccctg gatgatggcc gcgaagctgc cgctgccggt ggtttccgac
     2281 agcaccttca ccgcgaggat gcgcgcgtcg ggcgcgacgc cgatcgtgcc gacgccgttg
     2341 tcggcggcgg cgatgatgcc ggccacgtgg ctgccgtggt tgaagatgcc gttgcggccc
     2401 aggcacacgc cttcgccggc gacgaacgag gcggaatcgg gaaggatctg gctggcgagg
     2461 tcgaggtgcc ggcaggcgat gccggcgtcc agcaccgcga cggtggcgcc ggcgccgcgg
     2521 tagccctggg tccaggcgcc ggcgacgtcg atcgcctgtg cgccccactg caggttgaag
     2581 aacgcatcgt tgtcgccgga cgcgggcggg ttgccgtagt cgggttcgat cccgccggtc
     2641 gcctcgggct gctcgctctg gaatgcgtag tcgtacaccg ccgaacggat ccccggcacc
     2701 ttggccgcgc gcgcggcgaa gccggtgtcg gccgattcca ccaccgccac gccgatctgc
     2761 ggcaggcgcg cggtcacggt gccgccggcg gcctcgatct tgtgggccag cgcgttgtcg
     2821 aacgagaggg tattggcgct gacgatgtag gtcgtcgcat gcgcggtgga aacggccgcg
     2881 aaggaagcaa gggcgatcgc gatcgccttg gcgagcgtgg gcatgggcag gaattcccct
     2941 ggtggcggtg agcgtcggca accgtgcgct tggtcacggt tgaagcggca gtggatcaca
     3001 agccacggcc gcttcgcccg ccgcagtgca gcaagcggct gagccgttca gggtggcgga
     3061 ccgccacccg cgacatccgc gcaaataaaa agcccgcccc ggacgaaccg gttgcgggcc
     3121 tgctccctcc cccacgtcgg gatgcggacc gatcgtgaag gaaccgtgag gacggatgca
     3181 cgctgcagtg cagcaccccc actgaaccgc tcagcgcggg cgcggccccc gccgcaggtc
     3241 gcgcagcact tcgcgcgcgg cgttgcgtcc gggcaggccg ctgacgccgc cgcccgggtg
     3301 cgtgcccgcg ccgcacaggt acaggcccgg caccgcgccg cgatagttgc cctggccgag
     3361 cagcgggcgc gcgccgaaca actggtccag gccgagcgcg ccgtggaaga tgtcgccgcc
     3421 gacgaggccg aactcgcgct cgaggtcgag cggcgacagc gcgcggtagc cgagcacgct
     3481 gcggcggaag ttgggcgcga ccgcgtcgac ggtgtcgagc atcagctgcg cgacggtctc
     3541 gcgatgcgcg tcccagcccc cgtcctcgag caccggattg acgtgctggc agaacaggct
     3601 ggcgacgtgg tggccaggtg gcgccaacgt gtcgtcgagc gacgagctga tcaccacttc
     3661 cacgatcggc gcacgcgccc agccgggatt gtgcgcgcgc gacttcgcgt cgaaatacgc
     3721 ctgctcgaaa tagcgcagcg acggcccgac caggatgccg ctctggtggt gcggctgcag
     3781 cccggtgccg ggcgcggcgc cgaagtcggg cagttccgcc agcgcgacgt tcatgcggaa
     3841 ggtgccggac ccgcagcggt agcggtcgat gcgctcgacc gtgtccgcgt cgagcgcgcc
     3901 gcgcggcacc aggcgctggt agagcagctt gggattgacg ttggccacga ccgtgcccgc
     3961 gcgcaggctg cgtccgtcgc gcaggcgcac gccgctcgcg cgcccgccgt cgaccagcag
     4021 ttcctccacc gccgcgccgg tctcgagggc cacgccgcgc gcacggcatt cggcggcgat
     4081 cgcgtcgctg atcgcgccca tgccgccgat cgcgtggccc cacgccccgg ccttgccgtt
     4141 gacctcgccg aacacgtggt gcagcagcac gtaggccgag ccgggcgtgt acgggctggc
     4201 gaagttgccg accaccgcgt cccagccgag caccgccttc agcggctcgc cctcgaacca
     4261 gtggtcgagc agttcgcccg ccgacttggt gaacaggtcg agcaggtcgc gcttgccggc
     4321 gaggtcgaag ccgcgcagct ggcgcgccac cgacgccgaa gccagccagt cggcgagcac
     4381 gaagcggtcg gagacgttcg gcggcgtgcg caccgcgagc gcgcgcacca gcgccaccac
     4441 gcgttcgagc atcgcggaat acgcgggcag gcggtcggcg tcgcgttgcg accagcgcgc
     4501 ggcctcggcc tgcgtgtacc cgccgccgaa gcggaacgcg cgcccgtcgg gcagcggcag
     4561 gaagttggcg tacgggcgct cgacgatgcg cagcccgtgc gcgtgcaggt gcaggtcctc
     4621 gatcaccgcg cggtgcagca ggctcaccgt gtagctggcg gtggaattgc ggaagcccgg
     4681 gtggaactcc tcggtcaccg cggcgccgcc gagcaccgcg cggcgttcga gcacgcgcac
     4741 ccgcagcccg gcgcgcgcga ggtaggccgc gcacaccagg ccgttgtggc cgccgccgat
     4801 cagcaggacg tcgtcgtgct cgtggttgcg catcgggctg gtcgcggcga cggagccgcg
     4861 actatagcgg ccgcggcgcg ctcaccagcg ccgggtgacg ccgaccaccc aggcatcgcc
     4921 ggtcgcatcg cgcccgagcg gataggcggc gggcccgtat tccgcaccgc cgccacgcag
     4981 gaacgtgcgc gccagctgca ggtcgaagcc ggccgcctgc aggccgacgc cgagccgcgc
     5041 gtcgtaggcc gacggcgcat cggcgcctcg cgcgggatgc agccagccgg cgtgggcgag
     5101 caggcgcagt cgccgcgaca gcggctgctg ggcgtcgagg ctggtgtaga gcgcatcccc
     5161 gccgccgaaa tagcctcggg cgtaggccag gcgcacgccg aggcgttcgc cggccagccc
     5221 ggcgtagagc tcggggtagc cgtcgccgga tgccgcggag aaacgggtgt actgcgcgcc
     5281 gatgtcccag ctggcgccat tgccgaaacg ccccgcccag ccggcatacc cgacccagcg
     5341 cagcatgtcg cggccgtaca gccgcgccgt cgacgcgaac gcgccgacgt agccgccggc
     5401 gtcggcatcg aagccggcgg cgagctgcag cgcggggtcg ccatcggaca gcgacacgcc
     5461 gcgatagcga tcgtcggaca cgagggcgat gctcgcgctg gcctgcgcgc gcgccgcggt
     5521 ggcgaagagc agcaggccgc acgcggccac catgcgcagc atccgggcga cgcctcatcg
     5581 gcgcggcatg ggcctcgcgt cctccgcgac gacgcaggtg cacgcgcagt gccccaggcg
     5641 gctcgccacg gcgcagggat cgatcggcca cggccgcttc gaggcggagc ctactcctgc
     5701 cggccgcagc gcggcatgca cgcccgcgcc atccagcgcg ggatcgagct ggcgcagcag
     5761 ggcgacgagg ccgctgactt cggcggcggc gaaggaattg cccgacacca ggccccagcc
     5821 gccaccgggc aacggcgccg gcacgccatc ggcgggcgcg agcacctgcg ccgccgcgct
     5881 cgcccggccg tcgccgccgg ccaccgccag cacgccggga tgcgacgcgg gaaagccgcc
     5941 gtcgccggcc tgcgcgtcga ccgcgccgac cacgctcgtg ccgtcggcga gcgccacctc
     6001 gagcaggcgc gcgagcaggc ggtcgcgggg gccggtcagg ctgaggttga gcacctgcgc
     6061 gcgcgcgtcg atcgcgaact gcagcgcctt cgccagggtg aagctgttgc acgccgcgtg
     6121 cgccgcatcc tgctgccagc acgcgcgcag cgcgagcagg cgcgcaccgg gcgcgatgcc
     6181 ggcgatgccg atgccgtcgc cggcgcgcgc ggcgatgatg ccggcgaccg cggtgccgtg
     6241 cgcttcgccg acctccctgc gcgcgtcgac gaaattgcgc gcggtttcga cctgcccccg
     6301 caggtccgga tgcagcgcgg cgacgccgct gtcgatgacg gcgacgcgca cgcccctgcc
     6361 ggtggccagc gcctgcagtt gcggcaggtg ccaggcgcgc gtgaccggct gcgcggccgc
     6421 gagcggatcc acgccgggcg cgccgtcggc gagcacgcgg aattcctgca tcggctcgac
     6481 cgactcgacg cgcggatcgc gcgcaagcgc ctgcaccgct cgcccggccg cggcggcgtc
     6541 cggcgcctgc agcacgaagc agtcgacatg cagcgcgggc atcggccagt cgtcctgcag
     6601 gcgcaggccc tgcgcctggc cgagcgcgcg cgcgatgcgc cggcgcgcgg cgtggcccgg
     6661 cgcatcgcgg tagggcgtgc cgagataggc cgagtcgggc cggaaatgtg gcggcggcgt
     6721 gcgcagcatc agcagcacct gcgatggcgc cgccggcccc gccgcgtggc agacgccggc
     6781 cagcacccac agcgcgaacg cgcacagcat ccgcgcgcac ggcatccgca gcgccggca
//
LOCUS       DATIQC010000380         2433 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_307782, whole genome shotgun sequence.
ACCESSION   DATIQC010000380 DATIQC010000000
VERSION     DATIQC010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307782"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..1325
                     /locus_tag="VLM17_08155"
     CDS             102..1325
                     /locus_tag="VLM17_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013536151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HSR65556.1"
                     /translation="MDIRPILSTLRRHKTAAALIVLEIALSCAIICNAVFLISERLSR
                     MHMSSGVAEDAIVSVSISGIGNDDNAAALTREDLAALRAIPGVAAASVSNQVPFGHSS
                     WNSSVSTQPNQRESMINAAMYLGSEDLVETLGVRIVAGRDFQPAEYVDFDPAKGFGNL
                     SVHSVLITRGMAEKLFPGKNAVGQVFYMGDDQPITVVGVIDRLVRPFLPSDDSRGDYS
                     MMFPLRMPYSAAGSYLLRTTPDQRERVLKEASAALEKNDPNRLLRDQKTLSQVRDEFF
                     RQDKAMAWLLGAVCIALLVVTALGIVGLASFWVQQRTKQIGVRRALGATRGQVLRYFQ
                     TENFLLATLGIVLGMFGAYGINQLLMGHYELPRLPALYLPAGALALWLLGQVSVLGPA
                     RRAAAVPPAVATRSV"
     gene            1383..>2433
                     /locus_tag="VLM17_08160"
     CDS             1383..>2433
                     /locus_tag="VLM17_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HSR65557.1"
                     /translation="MPTVLVVDDNPAVATALETLFSLHDIDTRSVQSPGEALALLGRD
                     PVDLVVQDMNFQQDTTSGEEGVALFGEIRARFPDLPVILLTAWTHLESAVDLVKAGAA
                     DYLAKPWDDRKLLATVNNLLELAETRRALAQVRSGERRRRDALLRDHDLRGYVFADAA
                     SERVLSLACQVARADLPVLITGPNGTGKERIAEIVHANSAVRDGPFVAVNCGALPGEL
                     IEAELFGADAGAYTGASKAREGKFEAADGGTLFLDEIGTLPLAGQVKLLRVLETGRFQ
                     RLGSNRERTVKVRVLSATNADLPALIAAGQVREDLYYRLNAIELQLPALAQRPDDILP
                     LARAFLPPGKRLGEDA"
BASE COUNT          355 a          892 c          839 g          347 t
ORIGIN      
        1 tcgcgctggt cgccagcgtg ctcgccgggc tgctgccggc gtggcgcgcc tgccaggtca
       61 cgcccgccat ccagctcaag tcgcagtaac cggagaccac catggacatc cgccccatcc
      121 tctccaccct gcgccggcac aagaccgccg ccgcgctgat cgtgctggag atcgcgctga
      181 gctgcgcgat catctgcaac gccgtgttcc tgatcagcga gcgcctgtcg cgcatgcaca
      241 tgtccagcgg cgtcgccgag gacgcgatcg tcagcgtttc gatcagcggc atcggcaatg
      301 acgacaacgc cgcggcgctg acccgcgagg acctcgcggc gctgcgcgcg atcccgggcg
      361 tggccgccgc gagcgtgagc aaccaggtgc cgttcggcca cagctcgtgg aacagctcgg
      421 tgagcaccca gcccaaccag cgcgagtcga tgatcaacgc cgcgatgtac ctcggcagcg
      481 aggacctggt ggaaaccctc ggcgtgcgca tcgtcgccgg ccgcgatttc cagccggccg
      541 aatacgtgga cttcgacccg gccaagggct tcggcaacct gtcggtgcat tccgtgctga
      601 tcacccgcgg catggccgag aagctgttcc cgggcaagaa cgcggtcggg caggtgttct
      661 acatgggcga cgaccagccg atcaccgtgg tcggcgtcat cgaccgcctg gtccggccct
      721 tcctgccctc cgacgacagc cgtggcgact actcgatgat gttcccgctg cggatgccct
      781 acagcgccgc cggcagctac ctgctgcgca ccacccccga ccagcgcgag cgggtgctca
      841 aggaggcctc cgcggcgctg gagaagaacg atccgaaccg cctgctgcgc gaccagaaga
      901 cgctgtcgca ggtccgggac gagttcttcc gccaggacaa ggcgatggcg tggctgctcg
      961 gcgcggtgtg catcgccctg ctggtggtga ccgcgctcgg catcgtcggc cttgccagct
     1021 tctgggtgca gcagcgcacc aagcagatcg gcgtgcggcg tgcgctcggc gcgacccgcg
     1081 gccaggtgct gcgctacttc cagaccgaga acttcctgct cgccacgctc gggatcgtgc
     1141 tcggcatgtt cggggcctac ggcatcaacc agctgctgat gggccattac gagctgccgc
     1201 gcctgccggc cctgtacctg ccggccggtg cgctggcgct gtggctgctc gggcaggtct
     1261 cggtcctcgg gccggcacgg cgcgccgcgg cggtgccgcc ggcggtggcc acccgcagcg
     1321 tttaaagtgg ggtcacgggg cgcgccgcga ggcgcgcccg ccgcccaacg cgagccgcca
     1381 tcgtgcccac cgtccttgtc gtcgacgaca accccgccgt cgccaccgcg ctcgagacgc
     1441 tgttctcgct gcacgacatc gatacccgca gcgtgcagtc gccgggcgag gcgctcgccc
     1501 tgctcgggcg cgacccggtc gacctggtcg tgcaggacat gaacttccag caggacacca
     1561 cctcgggcga ggaaggcgtg gcgctgttcg gcgagatccg cgcgcgcttt cccgacctgc
     1621 cggtgatcct gctgaccgcg tggacgcacc tggaaagcgc ggtcgacctg gtcaaggccg
     1681 gcgccgccga ctacctcgcc aagccgtggg acgaccgcaa gctgctggcc acggtcaaca
     1741 acctgctcga gctcgccgaa acccggcgcg cgctggcgca ggtgcgcagc ggcgagcgcc
     1801 gccggcgcga tgcgctgctg cgcgaccacg acctgcgcgg ctacgtgttc gccgatgccg
     1861 ccagcgagcg cgtgctctcg ctcgcctgcc aggtcgcgcg cgccgacctg ccggtgctga
     1921 tcaccggacc gaacggcacc ggcaaggaac ggatcgccga gatcgtgcat gcgaactcgg
     1981 cggtgcgcga tgggccgttc gtcgcggtca actgcggcgc gctgccgggc gaactgatcg
     2041 aggccgagct gttcggcgcg gacgcgggcg cctataccgg cgccagcaag gcgcgcgagg
     2101 gcaagttcga ggcggccgac gggggcacgc tgttcctcga cgagatcggt acgttgccgc
     2161 tcgccggcca ggtcaagctg ctgcgggtgc tggagaccgg gcgcttccag cgcctgggca
     2221 gcaaccgcga acgcaccgtc aaggtgcgcg tgctgagcgc gaccaacgcc gacctgccgg
     2281 cgctgatcgc cgccggccag gtccgcgagg acctctacta ccggctcaac gcgatcgagc
     2341 tgcagctgcc ggcgctggcg cagcgcccgg acgacatcct gccgctggcg cgcgccttcc
     2401 tcccacccgg caagcgcctg ggcgaggacg ccg
//
LOCUS       DATIQC010000381         7247 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_272539, whole genome shotgun sequence.
ACCESSION   DATIQC010000381 DATIQC010000000
VERSION     DATIQC010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7247
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272539"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..497
                     /locus_tag="VLM17_08165"
     CDS             <1..497
                     /locus_tag="VLM17_08165"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HSR65558.1"
                     /translation="AGGPSAETGEPPAAAKQGGQDWRFDMRQDGRTMSADEFDAWMRA
                     RQARVATGKPQAAPAAPSGAVAAAAPMPGPATPPVTPGPVSGPVDAVTLQVASFAARA
                     NAERALAMLAGAGIGNARVLDADANGRRVWRLRVGPVAPAAAAELGSRLQGLGFGQPQ
                     RVRE"
     gene            569..1789
                     /locus_tag="VLM17_08170"
     CDS             569..1789
                     /locus_tag="VLM17_08170"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HSR65559.1"
                     /translation="MNATKPARFLLAAAASAAVGLAFAQSPAPQPAAARPAALSDALP
                     IPAAPAPKVSKAWIVMDYATGQVLAGENIHTRMEPASITKVMTSYVVAAEMAAGKVHA
                     DDQVMMSEHAWREGGAGTEGSYSGFPVNQTAPLVEMEKGMVVQSGNDAAIALAEHVAG
                     SEDAFAQLMNAYAQRIGMKDSHFMNPHGLSTEGHYSSAYDLALLGRALIHDFPTSYSY
                     NKIKEFTVGPITQPNRNLLLWRDPSVDGIKTGHTDNAGYCLMASAKRGDQRLVSVVLG
                     DTSEVQRATDNEALLNWGFRFYETHQLYAANTAIARLKVFKGDADEVKLGLPEPLQIA
                     VPRGKYAQLKPTMDVPKSLAAPIRKGQRIGTVKVSLDGKLVATRPLVALEAVNEGGFF
                     KRLWDELMMWWESV"
     gene            complement(1893..2639)
                     /locus_tag="VLM17_08175"
     CDS             complement(1893..2639)
                     /locus_tag="VLM17_08175"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HSR65560.1"
                     /translation="MTTPDLLYLALITLALALDHFAFWPRFQRASRTDPARARRGIWS
                     AWMGMLWGLVAAGVALWLRTDRAWASLGLHLPGGWRLWGSAGLVLALAALYLSTFAQV
                     TRATSARKSALRARFGDAAAILPHARHELPRFVALSLTAGVCEEFVFRGYLIWVLQPV
                     LGLWGAAAVSCAAFAAAHAYQGTEGILKTGLMGALLTLVVLASGSLLPAIVLHALVDV
                     GSGSVAWLLLREAPMQDAQAARAARAAEPA"
     gene            complement(2971..3816)
                     /locus_tag="VLM17_08180"
     CDS             complement(2971..3816)
                     /locus_tag="VLM17_08180"
                     /inference="COORDINATES: protein motif:HMM:NF018684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HSR65561.1"
                     /translation="MKQIAYVMAACVIIATLAGCNNKNGPSASEDASSTAASPTMLSD
                     ISGVWRASDGTMISIVYEDKKLRLLFGSDAIPVQVGAIDEQNHTTNLKVTLPDGKPGI
                     WTVSQIFDPSNKESFTLQLTLHDGTQDQLSFVRKISNDDLNVIAAAESKVHAGSISEA
                     VDQSAAQPPGIVSTQATAEQPADPYDAAATAEPTESDPTSWAPSFDCAKASTGPERLI
                     CSSKELSAADVSLAQAYRAAKDASDDKARLSQQQSTWRKNVRDACSDVSCMLNAYQQR
                     IAELN"
     gene            complement(3883..4371)
                     /locus_tag="VLM17_08185"
     CDS             complement(3883..4371)
                     /locus_tag="VLM17_08185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65562.1"
                     /translation="MRNLVLPFAVLFGLATPLAAQAGVYSDDLSRCLVSHTQEADQIA
                     MAQWIFGMMSVHPDVSAIARVDDAARTGTSKKMASIFQTLLTESCKEETAKAVKYEGA
                     EALKNSFEVLGKIAMQTLMGNPKVAAESQAFMKYVDEAKLTAVVAPRKGESAATSAGD
                     NP"
     gene            complement(4490..4846)
                     /locus_tag="VLM17_08190"
     CDS             complement(4490..4846)
                     /locus_tag="VLM17_08190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65563.1"
                     /translation="MPGTLEERFHAAMVNLYYACAVRLKPPYYASRFLESVLASGGRQ
                     VAEHLLDAAAPSTGFAELRMRGVDALQLSVEYLVLQEPWCQLFSEEQRATAHARLAQA
                     DAEAPAPMAAMDERPP"
     gene            complement(4861..5808)
                     /locus_tag="VLM17_08195"
     CDS             complement(4861..5808)
                     /locus_tag="VLM17_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014089329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HSR65564.1"
                     /translation="MSQPSRLSTTLLGTLAIAALASPAARAASAQEQRAQQTAQIPTC
                     SRNLGTLAVVEPESNWWSGAQLPSPAALIKVFVSRSHCFTLLDRGKGMKAMQAERELA
                     GNGDLRGGSNLGKGQVKAADYVLVPDLVSQNDNSSGNNIGGLLGGLVGNRNVGALIGG
                     INIKRKTADVVLTVTDVRSSEQVAMTEGHASKTDLGWGAGAGVFWGAFAGVGASGYAD
                     TEIGQVITLAYLQAYTDLVGQLGGLPANASAANVQQAVTMQKPGRLFSSPDGKGVVRP
                     LDAGMLLYPTGNKQGVMWEVEDELGNKGWVSSLLFGLAR"
     gene            complement(5986..6423)
                     /locus_tag="VLM17_08200"
     CDS             complement(5986..6423)
                     /locus_tag="VLM17_08200"
                     /inference="COORDINATES: protein motif:HMM:NF023374.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3465 domain-containing protein"
                     /protein_id="HSR65565.1"
                     /translation="MSANRIALLLAAGVLAAWLLAERRAPQEAPVASTPAAATASDDL
                     AADRATREVTGQGIVLRVLRDDTNGERHQRILLRLASGDTLLVAHNLDLAPRVEPLQP
                     GDTLAFHGEYVWNEKGGVVHWTHHDPAGQHEAGWLRHDGRTFQ"
     gene            complement(6434..6631)
                     /locus_tag="VLM17_08205"
     CDS             complement(6434..6631)
                     /locus_tag="VLM17_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65566.1"
                     /translation="MATLIFGMLFGAVGLGYYIYGKRQQAPLPLACGVLLMVFPYFVP
                     NAWATLLVGALLMAVPWFVHL"
     gene            6884..7162
                     /locus_tag="VLM17_08210"
     CDS             6884..7162
                     /locus_tag="VLM17_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005411067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HSR65567.1"
                     /translation="MEIKSDNPEHGFQFPGVFEITAMGPAGSGLESTIPALLEAAGLP
                     VLRETVSTRESSGGKFVSVRLSFQAESREQYDVAHAVLREHPEVKWTL"
BASE COUNT         1140 a         2481 c         2506 g         1120 t
ORIGIN      
        1 ccgcgggcgg tccgtcggcc gaaaccggcg agcccccggc ggcggcgaag cagggcggcc
       61 aagactggcg cttcgacatg cgccaggacg gccgcacgat gagcgccgac gagttcgacg
      121 cgtggatgcg cgcgcgccag gcgcgcgtcg ccaccggcaa gccgcaggcg gcccccgccg
      181 cgccatcggg cgccgtggcc gcagccgcac cgatgcccgg ccccgccacg ccgcccgtga
      241 ccccggggcc ggtctccggt cccgtcgacg ccgttaccct gcaggtcgcc agcttcgccg
      301 cccgcgcgaa cgccgagcgc gcgctggcca tgctcgccgg tgccggcatc ggcaacgcgc
      361 gcgtgctcga cgccgacgcc aacggtcgca gggtctggcg cctgcgcgtc ggcccggtcg
      421 cacccgccgc cgccgcggaa ctcggcagcc gcctgcaggg tctgggcttc ggccagccgc
      481 aacgcgtgcg cgagtagact gcacgccttc cttctcttta ccagcaaccg gtcacggacg
      541 gccggcatta ccggagtctg ttgtcccgat gaacgccacg aagcccgccc gcttcctgct
      601 cgccgccgcc gcgtccgccg cggtcggcct cgccttcgcc cagtcgcccg cgccgcaacc
      661 ggccgccgcg cgtccggccg cgctcagcga cgcgctgccg atccccgcgg cgcccgcgcc
      721 gaaggtgtcg aaggcctgga tcgtcatgga ctacgccacc ggccaggtgc tcgccggcga
      781 gaacatccac acgcgcatgg agccggccag catcaccaag gtgatgacct cctatgtcgt
      841 cgccgccgag atggctgccg gcaaggtcca cgccgacgac caggtgatga tgagcgagca
      901 cgcctggcgc gaaggcggcg ccggcaccga gggcagctac agcggtttcc cggtcaacca
      961 gaccgcgccg ctggtcgaga tggaaaaggg catggtcgtg cagtcgggca acgacgccgc
     1021 gatcgcgctc gccgagcacg tcgccggcag cgaggacgcg ttcgcccagc tgatgaacgc
     1081 ctacgcgcag cgcatcggca tgaaggactc gcacttcatg aacccgcacg gcctgtcgac
     1141 cgagggccac tactccagcg cctacgacct ggccctgctc ggccgcgcgc tgatccacga
     1201 cttcccgacc tcgtactcct acaacaagat caaggaattc acggtcggcc cgatcaccca
     1261 gcccaaccgc aacctgctgc tgtggcgcga cccgtcggtg gacggcatca agaccggcca
     1321 caccgacaac gccggctact gcctgatggc ctcggccaag cgcggcgacc agcgcctggt
     1381 cagcgtcgtg ctcggcgaca ccagcgaagt gcagcgcgcc accgacaacg aggcgctgct
     1441 caactggggc ttccgcttct acgagaccca ccagctctac gccgccaaca ccgcgatcgc
     1501 gcgcctgaag gtgttcaagg gcgacgccga cgaagtgaag ctgggcctgc ccgaaccgct
     1561 gcagatcgcc gtcccgcgcg gcaagtacgc gcagctcaag ccgaccatgg acgtgccgaa
     1621 gtcgctcgcg gcgccgatca ggaagggcca gcgcatcggc acggtcaagg tctcgctcga
     1681 cggcaagctg gtcgccaccc gcccgctggt cgcgctggag gcggtcaacg aaggcggctt
     1741 cttcaagcgc ctgtgggacg agctgatgat gtggtgggag tcggtgtaac gcgatcgcat
     1801 cgctgcagca aaaaggccgg cgcaagccgg cctttttcgt gcgcgaccag gcacggccgc
     1861 cgcggcgctc cagtcgcttt tcgaacgtcg acctatgcag gctctgcggc ccgggcggcc
     1921 cgggcggcct gcgcgtcctg catcggcgct tcgcgcagca gcagccaggc cacgctgccc
     1981 gatccgacat cgacgagcgc atgcagcacg atcgcgggca gcagcgagcc ggacgccagc
     2041 accaccaggg tcagcagggc gcccatcagt ccggtcttca ggatgccttc ggtgccctgg
     2101 taggcgtggg ctgccgcaaa cgccgcgcag gacaccgccg ccgcgcccca caggccgagg
     2161 acgggctgca acacccagat caggtagccg cggaacacga actcctcgca cacgcccgcc
     2221 gtcagcgaca acgcgacgaa cctgggcagc tcgtggcggg cgtgcgggag gatcgccgcg
     2281 gcgtcgccga accgggcgcg cagggcggac ttgcgcgcgc tcgtggccct ggtgacctgg
     2341 gcgaaggtcg acaggtacag cgccgccagc gccagcacga gtccggccga gccccacagc
     2401 cgccacccgc ccggcaggtg caggccgagc gatgcccagg cccggtccgt gcgcagccaa
     2461 agcgcgacgc cggccgccac cagcccccac agcattccca tccaggccga ccagatcccg
     2521 cgccgcgcgc gcgccgggtc cgtccgggac gcgcgctgga agcgcggcca gaacgcgaag
     2581 tggtcgagcg ccagggcgag cgtgatcaag gcgaggtaga ggaggtcagg cgtggtcatg
     2641 gcgattcagt tcgggtcgtg tttggactca gcccgttcgc gaaggattcg agcctgatgg
     2701 attgttgctc aatcgggaga cttccgttct tcgggaaccg gtcggctcca cgccgacaag
     2761 cgcgatcgcg cgcgccaggc ccggcatgcc cgacccggcg cagatcgccg tcccgcgcgg
     2821 caagtacgcc cagctcaagc cggtgatcag gaagccagcg catcggcaaa gtgggcgaag
     2881 gcgtctgtac ttcttcagca aaaaagccgg cgtgagccgg ctttcctgtt caagggggct
     2941 tgggcaagcc tgagcgggag ccagaactcg tcagttcaac tcagcaattc gttgttggta
     3001 agcgttcaac atgcaagaga cgtcagaaca cgcatcacgc acgttctttc gccacgtcga
     3061 ttgctgctga ctgagccggg ctttgtcatc agaggcgtcc ttggctgccc gatacgcttg
     3121 cgccagtgag acgtcagccg cagacagttc tttgctcgaa cagatcagcc gctccggtcc
     3181 agtggaagct ttcgcacaat caaaacttgg cgcccaactg gtcgggtcgc tctccgtggg
     3241 ctccgccgtt gcagcagcgt catatggatc cgccggctgt tctgccgttg cctgggttga
     3301 aacaattcca ggcggctgcg ctgcggattg atctactgcc tcggaaatgc tgcccgcatg
     3361 aaccttgctc tcagcggccg caataacatt caagtcgtca tttgaaatct tgcgtacgaa
     3421 tgagagttga tcttgtgtgc cgtcgtgtag cgtcaattga agagtaaatg actctttatt
     3481 ggatggatcg aaaatttggg aaacagtcca gattcccggc ttgccatccg gaagcgtgac
     3541 tttcaaattg gtggtgtgat tttgctcatc aatcgcgccg acctgcacag gaatcgcatc
     3601 cgacccgaaa agcaggcgga gcttcttgtc ctcataaaca atcgaaatca ttgttccgtc
     3661 gctggcgcgc cacacgccgg agatgtcgct tagcatcgtc ggcgaggctg ccgtagagga
     3721 cgcatcctcg gaggcggatg gcccattctt gttattgcaa cccgcaagag ttgcaataat
     3781 gacgcaagca gccattacat acgcgatctg tttcattcaa ttcccctgtc catgcgtttt
     3841 gttgcgcgtc tgttgctctt tacattttca aggcggggtc gatcaggggt tgtcgccggc
     3901 ggacgtcgca gccgactcgc ccttgcgtgg cgccaccacc gccgtaagct tcgcctcgtc
     3961 gacatacttc atgaaggcct gcgactcggc ggcgaccttc gggttcccca tcagggtttg
     4021 catggcgatc ttgccgagca cctcgaagct gttcttgagt gcttcggcgc cttcgtactt
     4081 gacggctttc gcggtttctt ccttgcagga ctcggtcagc agggtctgga agatcgacgc
     4141 catcttcttg gacgttccgg tgcgggcggc gtcgtccacc ctggcgatgg ccgacacgtc
     4201 gggatgcacg gacatcatcc cgaagatcca ttgcgccatg gcgatctggt ctgcttcctg
     4261 cgtgtgcgag acgaggcagc gcgacagatc gtcgctgtag acgccggcct gcgcggccaa
     4321 gggcgtcgcg aggccgaaca ggacggcgaa gggcaggaca aggttccgca ttgcaagctc
     4381 cgctgttgga agaagtcggt cgctgcgtcc cgacgcggga ctgacgcccg tcgtgtctgc
     4441 tttgccgtgt ttccccgcgg ccattatgtg gccaggctgg tcgcagttgt cagggcggcc
     4501 gctcgtccat ggcggccatc ggcgccggcg cctccgcatc ggcctgcgcc agccgcgcgt
     4561 gcgcggtcgc gcgctgttcc tcggagaaca gctggcacca gggttcctgc agcacgaggt
     4621 actcgacgct cagctgcagc gcgtccacgc cgcgcatgcg cagttcggcg aagcccgtcg
     4681 acggcgcggc ggcgtcgagc aggtgctcgg cgacctgccg gccgccggac gccagcacgc
     4741 tttcgaggaa gcgcgacgcg tagtacggcg gcttgagccg cacggcgcag gcgtaataca
     4801 ggttcaccat cgccgcgtgg aagcgttcct ccagcgtccc gggcatggcg cgcgccccgt
     4861 tcagcgcgcc agcccgaaca gcagcgagga cacccagccc ttgttgccga gttcgtcctc
     4921 gacttcccac atcacgccct gcttgttgcc ggtcggatac agcagcatgc cggcgtcgag
     4981 cgggcgcacg acgcccttgc cgtcgggcga ggagaacagg cggccgggct tctgcatcgt
     5041 caccgcctgc tgcacgttgg cggcggacgc gttcgccggc aggccgccga gctggccgac
     5101 caggtcggtg taggcctgga ggtaggcgag cgtgatcacc tggccgatct cggtgtcggc
     5161 gtagccgctg gcgccgacgc cggcgaacgc gccccagaac acgccggcgc ccgcgcccca
     5221 gccgaggtcg gtcttgctgg catggccttc ggtcatcgcc acctgttcgg acgagcgcac
     5281 gtcggtgacg gtgagcacga cgtcggcggt cttgcgcttg atgttgatgc cgccgatcag
     5341 cgcgccgacg ttgcggttgc cgaccaggcc gccgagcagg ccgccgatgt tgttgccgct
     5401 ggaattgtcg ttctgcgaga cgaggtcggg caccagcacg tagtcggcgg ccttgacctg
     5461 gcccttgccg aggttggatc cgccacgcag gtcgccattg ccggcgagtt cgcgctcggc
     5521 ctgcatcgcc ttcatgccct tgccgcggtc gagcagggtg aagcagtgcg aacggctgac
     5581 gaagaccttg atcagcgcgg cgggcgaggg cagctgcgcg ccgctccacc agttggactc
     5641 gggctcgacg accgcgagcg tgccgaggtt gcggctgcag gtcgggatct gcgcggtctg
     5701 ctgcgcgcgc tgctcctgcg cgctggcggc gcgggccgcc gggctggcga gcgcggcgat
     5761 ggcaagggtg ccgagcaggg tggtggacag gcgggacggc tgcgacatgg ggacctcgat
     5821 gcagggaagg acggcgcgcc ggccgatgcc gcgcgtggcc cggggggcca tcgctgaagc
     5881 tgaacgcagg acgaggtggc ggtcggacac ggacggggac gcggtcgcgc gcccgcgggc
     5941 ggtcccggag agcccggctg cgggcagcgc cgccggctgc cggccttact ggaacgtgcg
     6001 cccgtcgtgg cgcagccagc cggcttcgtg ctggccggcg ggatcgtggt gggtccagtg
     6061 cacgacgccg cccttctcgt tccacacgta ttcgccgtgg aaggcgagcg tgtcgcccgg
     6121 ctgcagcggt tcgacgcgcg gggcgaggtc gaggttgtgc gcgacgagca gcgtgtcgcc
     6181 ggaggccagg cgcagcagga tgcgctggtg gcgctcgccg ttggtgtcgt cccgcagcac
     6241 gcgcaggacg atgccctgcc cggtgacttc gcgggtggcg cgatcggcgg caaggtcgtc
     6301 gctggcggtg gcggccgcgg gggtggaggc gaccggcgct tcctgcggcg cgcgccgctc
     6361 cgccagcagc cacgcggcga gcacgccggc ggcgaggagc agcgcgatgc ggttggcgct
     6421 catcgggcct tgctcacagg tgcacgaacc acggcaccgc catcagcagc gcgccgacca
     6481 gcagggtggc ccacgcgttc ggcacgaagt aggggaacac catcagcagc acgccgcagg
     6541 ccagcgggag cggcgcctgc tggcgcttgc cgtagatgta gtagccgagg ccgacggcgc
     6601 cgaacagcat gccgaagatc agcgtggcca tggggggtgc cctgcgcccg ggatgcggcc
     6661 atggtgcccg ttcgcggcgt cgcgttcacc tgtcgggggc ccgggcgcac ggggtttcgt
     6721 ggcggggact tgtccgggcc gcgatccgcg accggctgga caccgctgcg aggtgccgtg
     6781 cagcgcaggc catggacggc cggcatcccg tcgccacgcg cgacgtccgc ccgctggacg
     6841 ctttcacctt gggttccccc acccgcgcgc ccataatccg tggatggaaa tcaaatccga
     6901 caaccccgag cacggcttcc agttcccggg cgtgttcgag atcaccgcga tggggccggc
     6961 cggcagcggg ctggagtcga ccatcccggc gttgctggaa gcggccggac tgccggtgct
     7021 gcgcgagacg gtgagcacgc gcgaatcgag cggcggcaag ttcgtgtcgg tgcggctgag
     7081 tttccaggcg gagtcgcgcg agcagtacga cgtcgcccac gcggtgctgc gcgagcatcc
     7141 ggaagtgaag tggacgctgt gagcgggcgc cgcgcatgag cgcgcagcgc tgcctcgtcc
     7201 gcgatctcgg ccgccagccc tacgaaccgg tgtggcgcgc gatgcag
//
LOCUS       DATIQC010000382         3684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_307856, whole genome shotgun sequence.
ACCESSION   DATIQC010000382 DATIQC010000000
VERSION     DATIQC010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307856"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..284
                     /locus_tag="VLM17_08215"
     CDS             <1..284
                     /locus_tag="VLM17_08215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LysM domain-containing protein"
                     /protein_id="HSR65568.1"
                     /translation="DGPGAPATAAVPPTAAGTPSAPPAPTVAGNAIPVAAEARATPVA
                     THTVARGESAWSIARRYGLRVEDLLARNKLLPRSVLRPGTVLRVALAGE"
     gene            343..1140
                     /locus_tag="VLM17_08220"
     CDS             343..1140
                     /locus_tag="VLM17_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HSR65569.1"
                     /translation="MGFLQGKRALITGIASERSIASGIAEAMHREGAELAFTYQNDKL
                     KSRVEKAAAEHGSDIVLPLDVSDDAQIAACFEQLGQRWSDGFDILVHAIAYAPREAIA
                     GQFLDGLTRENFAVAHDISAYSLAALAKAARPLMQHRHGAILTLSYLGAERALVGYNV
                     MGVAKASLEATVRYLAYNLGPEGIRVNAISAGPIKTLAAAGIAGFRKILGHVEENAPL
                     RRTVTIEDVGNVAAFLCSDLASGVTGEVTYVDAGYNILGMTGLDDGE"
     gene            complement(1224..3206)
                     /locus_tag="VLM17_08225"
     CDS             complement(1224..3206)
                     /locus_tag="VLM17_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005920425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HSR65570.1"
                     /translation="MLQTLREKTSGWFATVVLAALTVPFAFFGIDQYLTQHNETFVAK
                     LEAPPAWWPSAPATWPVTMLWQRDTVETDEFRTAFERARQQARQQQGEQFDPRAFESA
                     DNKRKVLDQLIDQHVMQMTAQRHDIAISDVQVRSTILGIPAFQGDSGRFDPQRYQLAL
                     AGANPPLTPRGFEQKVREGMASELIPQQVAQSAFVTPSEVQRLLRILGEKRDVSFVVL
                     PAPAPDTAPVGAQDIQRWYDSHPADYRAPETATIEYVDIDGSTLPAPAAADDATLRQR
                     YEQEKARFVQPEQRLAAHILVKVPEGASAAVQKAAEQKAQQIAAQARQPGADFAALAR
                     ADSEDAGSKAGGGDLGWVTKGQMVKPFEDALFAMQPNEVRGPIKTQFGWHVIQLREVK
                     AGAQTPFEQVRDQLAKEQAEADREHAFNDLVGKLVDQVYKNPTSLGPAARSAGLAVQK
                     LGPFARGQGSGIAANPAVQRAAFSESAIEDGTVSDPVEVGPNHSVLIRVVAHEQARQR
                     PLAEVAPQVVAAVRADRARRASVAVADAMVAALRQGKPLAELAGARGLPAPSDAAGLP
                     RGAPVPDPKANDAIFATVAPAAGRPAPGKAVLDDGRVVVFVVRKVTPGNPGEATPEQQ
                     QAMRQQVAQFSGEAEAAALVESLRRQLKITVAEDRL"
     gene            complement(3348..3424)
                     /locus_tag="VLM17_08230"
     tRNA            complement(3348..3424)
                     /locus_tag="VLM17_08230"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3388..3390),aa:Asp,seq:gtc)
     gene            complement(3473..3547)
                     /locus_tag="VLM17_08235"
     tRNA            complement(3473..3547)
                     /locus_tag="VLM17_08235"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3513..3515),aa:Val,seq:tac)
BASE COUNT          514 a         1332 c         1297 g          541 t
ORIGIN      
        1 cggacgggcc cggcgcaccc gcgaccgcgg cggtgccgcc cacggccgcc ggcacgccgt
       61 cggcgccgcc cgcgcccacc gtcgccggca acgccattcc cgtcgcggcc gaggccaggg
      121 cgacgcccgt cgccacccat acggtggccc gcggcgaatc ggcctggagc atcgcccgcc
      181 gctatggcct gcgggtggag gacctgctcg cgcgcaacaa gctgctgccg cgcagcgtgc
      241 tgcgcccggg gaccgtgctc agggtcgcgc tggccggcga gtagccctgc gcgcccgggc
      301 gcggcacact tgcaagttct ttcccgcaca cggaccgcaa gcatgggatt cctgcaaggc
      361 aagcgcgcgc tcatcaccgg tatcgccagc gaacgctcga tcgccagcgg cattgccgag
      421 gcgatgcacc gcgaaggcgc cgaactggcc ttcacctacc agaacgacaa gctcaagtcg
      481 cgcgtcgaga aggccgccgc cgagcacggc agcgacatcg tcctgccgct cgacgtgtcc
      541 gacgatgcgc agatcgccgc ctgcttcgag cagctcggcc agcgctggag cgatggtttc
      601 gacatcctcg tgcatgcgat cgcctacgcc ccgcgcgagg ccatcgccgg ccagttcctc
      661 gacgggctga cccgcgagaa cttcgccgtc gcccacgaca tctcggcgta ttcgctggcc
      721 gcgctcgcca aggccgcgcg cccgctgatg cagcaccggc atggcgcgat cctcaccctc
      781 agctacctcg gggcggagcg ggcgctggtc ggctacaacg tcatgggcgt ggccaaggcc
      841 agcctcgagg cgaccgtgcg ctacctcgcc tacaacctcg gtccggaagg catccgcgtc
      901 aatgcgattt ccgccggccc gatcaagacg ctggccgcgg ccggcatcgc gggcttccgc
      961 aagatcctcg gccacgtcga ggagaatgca ccgctgcgcc gcacggtgac gatcgaggat
     1021 gtcggcaacg tcgccgcgtt cctctgttcc gacctcgcct ccggcgtgac cggcgaggtc
     1081 acctacgtcg acgccggcta caacatcctc ggcatgaccg ggctcgacga cggcgagtga
     1141 gcacggcgac gggccgatga aggcggaccg atgaaaaaaa gcccggcatc gccgggcttt
     1201 ttttcaacgc gcggccggaa ccgtcagagg cgatcctcgg cgaccgtgat cttcagctgc
     1261 cggcgcagcg attcgaccag cgcggcggcc tcggcctcgc cggagaactg cgcgacctgc
     1321 tggcgcatgg cctgctgctg ctcgggcgtc gcctcgcccg gattgcccgg cgtgaccttg
     1381 cgcacgacga acaccaccac gcgaccgtcg tcgagcacgg ccttgcccgg cgcgggccgg
     1441 ccggcggccg gcgccaccgt ggcgaagatg gcgtcgttcg ccttcggatc gggcaccggc
     1501 gcgccgcgcg gcaggccggc ggcatcgctc ggcgcgggca ggccgcgcgc gcccgcgagc
     1561 tcggccagcg gcttgccctg gcgcagcgcc gcgaccatcg cgtcggcgac ggcgacggag
     1621 gcacgtcggg cgcgatcggc gcgcaccgcc gccaccacct gcggtgccac ttcggccagc
     1681 ggtcgctgcc gtgcctgctc gtgggcgacc acgcggatca gcacgctgtg gttggggcca
     1741 acctcgaccg gatcgctgac ggtgccgtcc tcgatcgccg attccgagaa cgccgcgcgc
     1801 tggaccgcgg gattggcggc gatgccgcta ccctggccgc gcgcgaacgg ccccagtttc
     1861 tgcaccgcca ggcccgcgct gcgcgccgcc gggccgagcg aggtcgggtt cttgtagacc
     1921 tggtcgacca gcttgccgac gaggtcgttg aaggcatgct cgcgatccgc ctccgcctgc
     1981 tccttggcca gctggtcgcg cacctgctcg aacggcgtct gcgcgcccgc cttgacctcg
     2041 cgcagctgga tcacgtgcca gccgaactgg gtcttgatcg ggccccggac ctcgttcggc
     2101 tgcatcgcga acagggcgtc ctcgaacggc ttgaccatct ggcccttggt cacccagccg
     2161 aggtcgccgc cgccggcctt ggaaccggcg tcctcggagt cggcgcgcgc gagcgcggcg
     2221 aagtcggcgc ccggctggcg cgcctgcgcg gcgatctgct gcgccttctg ctcggccgcc
     2281 ttctgcaccg cggcgctggc gccttccggc accttgacga ggatatgcgc ggccagccgc
     2341 tgttcgggct gcacgaagcg cgccttctcc tgctcgtagc gctggcgcag ggtggcgtcg
     2401 tcggccgcgg cgggcgccgg cagcgtgctg ccgtcgatgt cgacgtattc gatcgtcgcc
     2461 gtctcgggcg cgcgatagtc ggccggatgg ctgtcgtacc agcgctggat gtcctgcgcg
     2521 cccaccggcg cggtatcggg cgccggcgca ggcagcacga cgaaggaaac gtcgcgcttc
     2581 tcgccgagga tgcggagcag gcgctggact tccgacgggg tgacgaaggc gctctgcgcg
     2641 acctgctggg ggatcagctc gctggccatc ccttcgcgca ccttctgctc gaagccgcgc
     2701 ggcgtcagcg gcggattcgc gccggccagc gccagctggt agcgctgcgg gtcgaacctg
     2761 ccgctgtcgc cctggaacgc ggggatgccg aggatcgtgc tgcgcacctg cacgtcgctg
     2821 atcgcgatgt cgtggcgctg cgcggtcatc tgcatgacgt gctggtcgat cagctggtcg
     2881 agcaccttgc gcttgttgtc cgccgactcg aaggcacggg ggtcgaactg ctcgccctgc
     2941 tgctgccggg cctgctggcg cgcgcgctcg aacgcggtgc ggaactcgtc ggtttcgacg
     3001 gtgtcgcgct gccacagcat cgtcaccggc cacgtcgcgg gcgcggacgg ccaccaggcc
     3061 ggtggggcct cgagcttggc gacgaaggtt tcgttgtgct gggtcaggta ctggtcgatg
     3121 ccgaagaagg cgaacggcac cgtcagcgcg gcgagcacga cggtcgcgaa ccagccggaa
     3181 gtcttttcgc ggagagtctg cagcatgggt gcgagcgggc ggcctgcatg tgaagccgcg
     3241 cagtgtacct gcatgcgccg tccggcgcag gggcgcggcc aaggccgctt cgccggtacc
     3301 gcgggcagca aaaagcccgc atcgctgcgg gcttctgctt ggatcgatgg cggagtggac
     3361 gggactcgaa cccgcgaccg ccggcgtgac aggccagcat tctaaccgac tgaactacca
     3421 ctccgctgag cccacggatg atacagacca cgtccgggcc atgcaaccgg gctggtgggt
     3481 gctgagggga tcgaaccccc gaccctctcc ttgtaaggga gacgctctac cgctgagcta
     3541 agcacccggg acgcacacga taccgcagtc gtcatggggc gacgacgcgg acgcgcgcgg
     3601 tgcggcatgc agggaaagct ccgcatgcgc gattgcagcg gtggatcttc ccgcgggcgc
     3661 ctgcaggcgc gaactccggt gcct
//
LOCUS       DATIQC010000383         3557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_590507, whole genome shotgun sequence.
ACCESSION   DATIQC010000383 DATIQC010000000
VERSION     DATIQC010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590507"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..426)
                     /locus_tag="VLM17_08240"
     CDS             complement(<1..426)
                     /locus_tag="VLM17_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSR65571.1"
                     /translation="MSHLLPLPDPAASAAADGDEFAPDRAGELADIVRMAARLADAPI
                     AVLSVTEGDDFRLVATEGIDPGLIARDHAICRALDANQPEIEVPDARADLRFRHDPPV
                     QREGGIRYYCGVALFDPGQRLLGVLSVADVRQRGPAPESV"
     gene            complement(507..3173)
                     /locus_tag="VLM17_08245"
     CDS             complement(507..3173)
                     /locus_tag="VLM17_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015463128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSR65572.1"
                     /translation="MYSKQNHSLVDRVLAPSTRLMARFRFGQKAMLIGASFLVTCAVL
                     AGLLFFKIRADLHQTQQAMSAIAPADALYDGMFGMQHHRELVVRQSYKEALKPGAMES
                     AQAAADAGFTRVAAWETATLGKTSPALAEARAAWTKALGAHADANAATADHDAAIGKA
                     RLLMQALDEESGLALVNDPVMHYLSRAVVEQMPMLTEYASQQAVVATRVAGEGSIWAD
                     DRAHLAVANAMSAYLLNNIKAIDQQVRDSDPALAAKVSGPIEASRQALATQDAVIQKH
                     VLDAETPDIPLAAMGARAEATRAALQHSYDQLNAALKQSAGTFLASHKRQASLVAGII
                     AFALLLSGYLFLGFSRSTRASLQKIEEAAQMLARGQFPDQVRVDSQDELRGIGNSLER
                     AVKTLRGFEQAQRALFEAHQAGQISERLDSEAFDGAFGVMANEINTLVASHIAVKMRV
                     IEVVSAYARGDLSQDIERMPGEKARVTEGVDAVKAGMLAVNAEIKALVDAAVAGDFSR
                     RGDAQRFQFVYRDLVESLNTLMATADGGLNEVGALLSAVADGDLNRRVEGDLPGQFGS
                     LAEDANRTVDQLTQIVAQIRVGSDAINAAAGEIAAGNNDLSQRTEQQAASLEETASSM
                     EELTSTVKQNADNARQANQLAQGAADVAEQGGAVVGQVVHTMSAISDSSKKIADIIGV
                     IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSANAAKEIKQLITDSV
                     GKVEEGSQLVDRAGRTMGEIVTSVKRVTDIIADIAAASAEQSAGIEQVNVAITSMDEG
                     TQQNAALVEEASASARSLEQQAEQLVTTVAVFRVDPARMAQVERPQAAVVQLAAPRAR
                     KPAAAVAAKPVARRPRAQAAVAGNEVSNWQEF"
BASE COUNT          453 a         1261 c         1265 g          578 t
ORIGIN      
        1 cacggattcg ggcgcgggac cgcgctgccg gacgtcggcc accgacagca cgccgagcag
       61 gcgctgcccc ggatcgaaca gggcgacgcc gcagtagtag cggatgccgc cttcgcgctg
      121 caccggcgga tcgtggcgga agcgcaggtc ggcgcgcgca tccgggactt cgatctccgg
      181 ttggttggcg tcgagggccc ggcagatcgc gtggtcgcgc gcgatcaggc ccggatcgat
      241 gccttcggtc gcgaccaggc ggaagtcgtc gccttcggtc accgacagca ccgcgatcgg
      301 cgcatcggcc aggcgcgcgg ccatgcgcac gatgtcggcc agttcgccgg cccggtccgg
      361 cgcgaactcg tcgccgtcgg cggctgcgga ggcggctggg tcgggcagcg gcagcaggtg
      421 tgacatgggt cttccgtgag gcgggttggc ggaaaaatgc ggcgacgcca gctcctgctt
      481 ggcgccgccg gcgatgcagc gatcgatcag aattcctgcc agttgctgac ttcgttcccc
      541 gccacggcgg cctgtgcgcg cgggcggcgg gcgaccggct tggccgcgac cgcggccgcc
      601 ggcttgcgcg cacgcggcgc ggccagctgc acgaccgccg cctgcgggcg ttcgacctgg
      661 gccatgcggg ccggatcgac ccggaacacc gccaccgtcg tcaccagctg ctcggcctgc
      721 tgctccaggc tgcgcgccga ggccgacgct tcctccacca gcgccgcgtt ctgctgggtg
      781 ccctcgtcca tcgaggtgat cgcgacgttg acctgctcga tgcccgcgct ctgctcggcc
      841 gaggccgcgg cgatgtcggc gatgatgtcg gtgacccgct tcacgctggt cacgatctcg
      901 cccatggtcc tgccggcgcg atccaccagc tggctgcctt cctcgacctt gccgaccgag
      961 tcggtgatca gctgcttgat ctccttggcc gcgttggccg agcgctgcgc cagcgagcgc
     1021 acttccgatg ccaccaccgc gaagccgcgg ccctgctcgc cggcgcgcgc ggcttccacc
     1081 gccgcgttga gcgccaggat gttggtctgg aaggcgatgc cgtcgatcac gccgatgatg
     1141 tcggcgatct tcttcgacga atcggagatc gcgctcatcg tgtgcacgac ctggccgacc
     1201 accgcgccgc cctgttcggc gacgtcggcc gcgccctgcg ccagctggtt ggcctggcgg
     1261 gcgttgtcgg cgttctgctt caccgtcgag gtcagctcct ccatcgagga ggcggtttcc
     1321 tccagcgagg ccgcctgctg ctcggtgcgc tgcgacaggt cgttgttgcc cgcggcgatc
     1381 tcgccggcgg cggcgttgat cgcatccgaa ccgacccgga tctgggccac gatctgggtg
     1441 agctggtcga cggtgcggtt ggcgtcttcc gccaggctgc cgaactggcc gggcaggtcg
     1501 ccttccacgc ggcggttgag gtcgccgtcg gccacggcgg agagcagcgc gcccacctcg
     1561 ttgaggccgc cgtcggcggt cgccatcagc gtgttgagcg attcgaccag gtcgcggtag
     1621 acgaactgga agcgctgcgc gtcgccgcgc ctgctgaagt cgcccgcgac cgccgcgtcg
     1681 accagcgcct tgatctcggc gttgaccgcc agcatgccgg ccttgaccgc atcgacgcct
     1741 tcggtcacgc gcgccttctc gccgggcatg cgttcgatgt cctgcgagag gtcgcccctg
     1801 gcataggcgc tgaccacttc gatcacgcgc atcttgaccg caatgtgcga ggccaccagc
     1861 gtgttgatct cgttggccat caccccgaac gcgccatcga aggcttcact gtccagacgc
     1921 tcgctgatct ggccggcttg gtgcgcctcg aacagcgcgc gctgggcctg ctcgaagccg
     1981 cgcagcgtct tcaccgcgcg ctccaggctg ttgccgatgc cgcgcagctc gtcctggctg
     2041 tcgacccgga cctggtccgg gaactggccg cgggccagca tctgcgccgc ttcctcgatc
     2101 ttctgcaggg aggcacgggt gctgcggctg aagccgagga acaggtagcc gctgagcagc
     2161 agcgcgaagg cgatgatccc ggcgaccagg ctcgcctggc gcttgtggct ggcgaggaag
     2221 gtgccggcgc tctgcttcag cgcggcgttg agctggtcgt agctgtgctg cagcgccgcg
     2281 cgggtggctt ctgcgcgcgc gcccatcgcg gcgagcggga tgtccggcgt ctcggcgtcg
     2341 agcacgtgct tctggatcac cgcgtcctgc gtcgccagcg cctggcgcga cgcttcgatc
     2401 ggaccgctca ccttcgcggc cagagccggg tcgctgtccc gcacctgctg gtcgatcgcc
     2461 ttgatgttgt tgagcaggta ggccgacatc gcgttggcca ccgccaggtg cgcgcggtcg
     2521 tcggcccaga tcgagccctc gccggccacg cgcgtcgcga cgaccgcctg ctgcgaggcg
     2581 tattcggtga gcatcggcat ctgctcgacg acggcgcggc tcaggtagtg catgaccggg
     2641 tcgttgacca gggcgaggcc ggactcttcg tccagcgcct gcatcagcag ccgcgccttg
     2701 ccgatcgccg catcgtggtc ggcggtcgcg gcgttggcgt ccgcgtgcgc gcccagcgcc
     2761 ttcgtccacg cggcgcgcgc ctcggccagt gccggcgagg tcttgccgag cgtggccgtc
     2821 tcccacgcgg cgacgcgcgt gaagccggcg tcggcggcgg cctgcgcgga ttccatcgcg
     2881 cccggcttga gcgcttcctt gtaggactgg cgcaccacca gttcgcgatg gtgctgcatg
     2941 ccgaacatgc cgtcgtacag cgcgtcggcc ggggcgatcg cggacatggc ctgctgggtc
     3001 tggtgcaggt cggcgcggat cttgaagaag aggaggcccg ccagcaccgc gcaggtcacc
     3061 aggaacgagg cgccgatcag catggccttc tggccgaagc ggaagcgcgc catcaggcgg
     3121 gtcgagggcg cgagcacgcg gtcgaccagg gagtggttct gtttgctgta catgccgacc
     3181 tcaacgagga aatgccttgg gctcgatccg tcatcggccg gacggcgtgc gacttgaggg
     3241 agggcgatgg cggaggaggt cggggattcc ccgacccgcc gcgggcatcg cgcgcggcgc
     3301 acccgcgcgc ctgcggcggg cgtcacagat cggcaagcac gggctcaacc cgcgccgcgc
     3361 gcggccgatg caggggacaa cccatcccaa ggcaccagga gccttccatg cgccatctga
     3421 tcctcgcgac cggcctgtcc ctgctggcgg tttcgttcgc cgccccggcc ctcgccgacc
     3481 tcaagccgac caagcgggtc gaaccgcagt accccgtcga ggcggcacgc agcggcacca
     3541 ccggcttcgt cgagctc
//
LOCUS       DATIQC010000384         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_342777, whole genome shotgun sequence.
ACCESSION   DATIQC010000384 DATIQC010000000
VERSION     DATIQC010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342777"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..818)
                     /locus_tag="VLM17_08250"
     CDS             complement(<1..818)
                     /locus_tag="VLM17_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65573.1"
                     /translation="MFTSADLIEALRRRGRRSLRPDTPPGEFPSGWQDWFDAIAARVG
                     AVTGAAADAFVALFLEREPALPPPRAAKLTRWQAFATLWRQQWHGPAPEERRERVLAM
                     AITLVVHLVLVILLLWIAFVRYTGAPPPRGEEVVQVEFIGQGTPDRTGGAPAGGANAT
                     SASAARPARHAPGASSRQAARSPAAAASPSAAAREQPQHPTPPATPPQPLQVSNVPKP
                     DSAFVLPPPTPRTLDVPQLQAPALQVEPSEVQVIERAQPVEAPRPQFPAPQLSTP"
     gene            complement(841..1446)
                     /locus_tag="VLM17_08255"
     CDS             complement(841..1446)
                     /locus_tag="VLM17_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfuA family Fe-S biogenesis protein"
                     /protein_id="HSR65574.1"
                     /translation="MIQISESAQAHFRRLIEREDLPGLGVRLAAVHAGTPRADVRLEF
                     AEPRDLAGDEWAVDLEGFTLWVEAASVQYLDGAEIDYTQQPTGGQLQIRAPGIKGSAP
                     AESASLVERVRWVVEHEVNPQLAQHGGHASVQEVTGDGLVLLRFGGGCHGCGMADVTL
                     KQGIEKTLLARVPGVTAVRDATDHASGTAPYIRSDQPRDAA"
     gene            1552..1893
                     /locus_tag="VLM17_08260"
     CDS             1552..1893
                     /locus_tag="VLM17_08260"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HSR65575.1"
                     /translation="MTDLIALADAHCLPRRGSEHRLSEARVRELLPQVPGWELVEDGH
                     AISRTYTFPDYYRTIAFVNALAFVANREDHHPDLGVHYDRCVVRYSTHDVGGLSENDF
                     ICAAKADALVG"
     gene            complement(1906..>2239)
                     /locus_tag="VLM17_08265"
     CDS             complement(1906..>2239)
                     /locus_tag="VLM17_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HSR65576.1"
                     /translation="HVQVNAAGKPSMSHFRVLERRGGQSYCEIRIETGRTHQIRVHAQ
                     HIGHPVAGDDKYGDEAANKRLREQVGLKRLFLHASTLEFALDGGRAPYLLNAPLAPDL
                     IGVLDRLG"
BASE COUNT          295 a          821 c          812 g          311 t
ORIGIN      
        1 ggcgtggaca gctggggcgc ggggaactgc gggcgcggcg cctcgaccgg ctgagcccgc
       61 tcgatcacct gcacctcgct cggttcgacc tgcagggcgg gcgcctgcaa ctgcggcacg
      121 tccagcgtgc gcggcgtcgg cggcggcagc acgaacgcgc tgtctggctt gggcacgttg
      181 ctgacctgca gcggctgcgg cggcgtcgcc ggcggcgtgg ggtgttgcgg ctgctcgcgc
      241 gcggccgccg acggtgatgc cgccgcggct ggcgagcgtg cggcctggcg gctcgatgcc
      301 cccggcgcat ggcgggccgg ccgggccgcg gaggccgacg tcgcgttcgc cccgccggcg
      361 ggggcgccgc cggtgcggtc cggcgtgccc tggccgatga actcgacctg caccacctcc
      421 tcgccgcgtg gcggaggcgc accggtgtag cgcacgaagg cgatccacag cagcaggatc
      481 accagcacca ggtgtacgac cagcgtgatc gccatcgcca gcacgcgctc gcggcgctcc
      541 tcgggcgcgg ggccatgcca ctgctggcgc cacagcgtcg cgaatgcctg ccagcgggtg
      601 agcttggcgg cgcgcggcgg cggcaatgcc ggttcgcgtt cgaggaacag ggcgacgaag
      661 gcgtcggcgg ccgcgccggt caccgccccg acgcgcgcgg cgatcgcgtc gaaccagtcc
      721 tgccaaccgg atggaaattc gccaggtggc gtgtccgggc gcagcgacct gcgaccgcgc
      781 ctgcgcaggg cttcgatcag gtcggcggag gtgaacacgc gtcagcgccg ccggtaccgc
      841 tcaggccgcg tcgcgcggct ggtccgatcg gatgtagggc gccgtgccgc tggcgtggtc
      901 ggtggcgtcg cgcaccgcgg tcaccccggg cacgcgcgcg agcagcgtct tctcgatccc
      961 ctgcttgagg gtgacatcgg ccattccgca gccgtggcag ccaccgccga agcgcagcag
     1021 caccaggccg tcgccggtca cctcctgcac ggaggcatgc ccgccgtgct gcgcgagctg
     1081 cgggttgacc tcgtgctcga ccacccagcg cacgcgctcg accagcgacg cgctctcggc
     1141 cggtgccgag cccttgatcc cgggggcgcg gatctgcagc tggccgccgg tcggctgctg
     1201 cgtatagtcg atctcggcgc catcgaggta ctgcacgctc gccgcctcga cccagagggt
     1261 gaaaccttcc aggtcgaccg cccattcgtc gccggccagg tcgcgcggct cggcgaactc
     1321 gaggcggacg tccgcgcgcg gcgtgccagc atgcacggcg gccagccgca cgccgaggcc
     1381 cggcaggtcc tcgcgctcga tcagcctgcg gaagtgcgcc tgcgcggatt cggagatctg
     1441 gatcatggcg gctattctag cggcccgtgg gcgcgccccg ccgcgcgccg ctccatcgac
     1501 cgcggccgat ccgctggcat ccgttcagcg cagcggccgg aggacaccga catgaccgac
     1561 ctgatcgccc tcgccgatgc ccactgcctg ccgcgccgcg gaagcgaaca ccgcctgagc
     1621 gaggcgcgcg tgcgcgaact gctgccgcag gtgccgggct gggaactggt cgaggacggc
     1681 cacgcgatca gccgtaccta caccttcccc gactactacc gcacgatcgc gttcgtgaac
     1741 gcactggcct tcgtcgccaa ccgcgaggac caccatccgg acctcggcgt gcactacgac
     1801 cgctgcgtcg tccgctactc cacccacgac gtcggcgggc tgagcgagaa cgacttcatc
     1861 tgcgcggcga aggccgacgc gctggtcggc tgaccggccg ccggctcagc ccagccggtc
     1921 gagcaccccg atcaggtccg gcgccagcgg cgcgttgagc aggtagggcg cgcgcccgcc
     1981 gtcgagcgcg aactccaggg tggaggcgtg caggaacagc cgcttcagcc cgacctgctc
     2041 gcgcaggcgc ttgttggcgg cttcgtcacc atatttgtcg tcgcccgcca ccggatggcc
     2101 gatgtgctgg gcgtggacgc ggatctggtg ggtgcggccg gtttcgatgc ggatttcgca
     2161 atagctctgc ccaccgcgcc gctccagtac acggaaatgg ctcatcgacg gcttgcctgc
     2221 ggcattcacc tggacatgg
//
LOCUS       DATIQC010000385         1622 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_519604, whole genome shotgun sequence.
ACCESSION   DATIQC010000385 DATIQC010000000
VERSION     DATIQC010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519604"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            9..980
                     /gene="pdxA"
                     /locus_tag="VLM17_08270"
     CDS             9..980
                     /gene="pdxA"
                     /locus_tag="VLM17_08270"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050570 - 4-hydroxythreonine-4-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HSR65577.1"
                     /translation="MRPRLALVPGEPAGVGPELCVRAAQRDWDADLVAHGDRDSLQRA
                     AATLGLPLELVDPGAPAAPGRLPLVDIPCATLPAFGEPDPRNAAAVTDALRRGAAACL
                     QGTCAGLVTGPVHKGAINAGGIAYTGTTELLAAQAARPVVMMLANATMRVALATTHLP
                     LRAVADAITGAGLQRDLRIVHAALRADFGIADPVIAVLGLNPHAGEGGVLGREELDVI
                     EPALATLRAQGMRLVGPLPADTAFLPAKLAGFDAVFAMYHDQGLPVLKYSGFEQAVNL
                     TLGLPYPRVAVDHGTALDLAGSGRADPSSLFAAIATCARIARARAAA"
     gene            977..>1622
                     /gene="rsmA"
                     /locus_tag="VLM17_08275"
     CDS             977..>1622
                     /gene="rsmA"
                     /locus_tag="VLM17_08275"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HSR65578.1"
                     /translation="MSRAPSRTPDRDADGFRRDAKKHLGQNFLHERGVVEKIVQAIDP
                     QPGDRIVEIGPGQGALTFPLLDRHGALTAIEFDRDLLAPLAQAARAHGALTLIPADVL
                     SVDFTALASDLMPEGGQVRLAGNLPYNLSSPILFHALDHAAAIRDMHFMLQKEVVDRM
                     AAPPGSKVYGRLSVMLQAYCAVTPLFKVPPGAFRPAPKVDSAVVRLVPRAPEAIG"
BASE COUNT          202 a          638 c          567 g          215 t
ORIGIN      
        1 cggctgacat gcggccgcgg ctggcgctgg tgccgggcga gccggccggc gtcggccccg
       61 aactgtgcgt gcgcgcggcc cagcgcgact gggacgcgga cctcgtcgcc cacggcgacc
      121 gcgacagcct ccagcgcgcg gccgcgacgc tcgggttgcc gctcgaactc gtcgatcccg
      181 gcgcgcccgc cgcacccggt cgcctgccgc tggtcgacat cccctgcgcg acgctgccgg
      241 cgttcggcga accggatccg cgcaacgccg cggcggtgac cgacgcgctg cggcgcggtg
      301 cggccgcctg cctgcagggc acctgcgccg gcctggtcac cgggccggtg cacaagggcg
      361 cgatcaacgc cggcggcatc gcctacaccg gcaccaccga actgctcgcc gcccaggccg
      421 cgcggccggt ggtgatgatg ctggccaacg ccaccatgcg cgtcgcgctc gccaccaccc
      481 acctgcccct gcgcgccgtc gccgacgcga tcacgggcgc gggcttgcag cgcgacctgc
      541 gcatcgtcca cgccgcgctg cgcgccgact tcgggatcgc cgatcccgtg atcgccgtgc
      601 tcggcctcaa cccgcatgcg ggcgaaggcg gcgtgctcgg gcgcgaggaa ctggacgtga
      661 tcgaacccgc gctggccacg ctgcgcgcgc agggcatgcg gctggtgggc ccgctgccgg
      721 ccgacaccgc gttcctgccg gcgaagctcg cgggcttcga cgcggtgttc gcgatgtacc
      781 acgaccaggg cctgccggtg ctcaagtaca gcggcttcga gcaggcggtg aacctcaccc
      841 tcggcctgcc ctacccgcgc gtcgcggtcg accacggcac cgcgctcgac ctcgccggca
      901 gcggtcgcgc cgatccgtcc agcctgttcg ccgcgatcgc gacctgcgcc cgcatcgccc
      961 gcgcgcgtgc cgccgcatga gtcgcgcgcc ctcccgcacg cccgaccgcg acgccgacgg
     1021 cttccgccgc gacgccaaga agcatctcgg ccagaatttc ctgcacgagc gcggcgtggt
     1081 cgagaagatc gtgcaggcga tcgatccgca gcccggcgac cgcatcgtcg agatcggccc
     1141 gggccagggt gcgctcacct tcccgctgct ggatcgccac ggcgccctca ccgcgatcga
     1201 gttcgaccgc gacctgctcg cgccgctcgc ccaggcggcg cgggcgcacg gcgcattgac
     1261 gctgattccc gccgacgtgc tcagcgtcga tttcaccgcg ctggcgagcg acctcatgcc
     1321 ggaaggcggg caggtccgcc tcgcgggcaa cctgccctac aacctgtcct cgccgatcct
     1381 gttccatgcg ctcgaccatg ccgcggcgat ccgcgacatg catttcatgc tgcagaagga
     1441 agtggtcgat cgcatggccg cgccgcccgg cagcaaggtg tacgggcggc tgagcgtcat
     1501 gctgcaggcg tattgcgcgg tgacgccgct gttcaaggtg ccgccgggcg cgttccggcc
     1561 ggcgccgaag gtggactcgg cggtggtccg gctggtgccg cgcgcgcccg aggccatcgg
     1621 ca
//
LOCUS       DATIQC010000386         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_626017, whole genome shotgun sequence.
ACCESSION   DATIQC010000386 DATIQC010000000
VERSION     DATIQC010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626017"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..976
                     /gene="pheS"
                     /locus_tag="VLM17_08280"
     CDS             <1..976
                     /gene="pheS"
                     /locus_tag="VLM17_08280"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019299936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HSR65579.1"
                     /translation="ADIAAAETPDALEALRVALLGKHGSITAQLKALGALPADQRKAA
                     GEAINQARDALGDALATRKAALEGAALDARLATETIDVSLPGRDASRGGLHPVSRTME
                     RIAEIFGRLGYARAEGPEIEDDWHNFEALNFPPHHPARAMHDTFYMQPDGSGVARLLR
                     THTSGVQVRYMLGNQPPLRMIALGKVYRSDSDQTHTPMFHQCEGLLVDEHASFADLKG
                     TLAEFVRAFFERDFEMRFRPSYFPFTEPSAEVDIAWQQPDGSTRWLEVLGCGMVHPNV
                     LRNVGIDPERYTGFAFGLGVERFAMLRYGVDDLRSFFDNDVRFLRQFA"
     gene            987..>2123
                     /gene="pheT"
                     /locus_tag="VLM17_08285"
     CDS             987..>2123
                     /gene="pheT"
                     /locus_tag="VLM17_08285"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HSR65580.1"
                     /translation="MKFSENWLRQHVRTDASREELAATLTAIGLEVEDVTPLGAGLGG
                     VVVARIVECAKHPEADRLQVCQVDAGGARLQIVCGAPNARPGLVAPLATIGARIGGIT
                     IKAAKLRGVESNGMLCSAKELGLDSDASGLLELPGDAPVGAPLAGFLGLPDASFELKL
                     TPNRADCFSVRGIAFDVAAACNSEVAPFDVEPVPAASAASLPVELHAGADAPRYAGRV
                     IEGVDASRPTPAWMAERLRRGGIRPVSLLVDVTQYVMLELGQPMHAFDRDLLRGPVGV
                     RRARAGESLRLLDGRDVALDPEFLLVTDADRAVALAGVMGGLDTRVTDATRNVFLEAA
                     HFAPAAIIGRGRRLGLHTDAGHRFERGVDPELPRQAIEHATRLIL"
BASE COUNT          293 a          792 c          743 g          295 t
ORIGIN      
        1 cgccgacatc gccgcggcgg aaacgcccga tgcgctcgag gcgctgcgcg tcgccctgct
       61 cggcaagcac ggcagcatca ccgcgcagct gaaggcgctc ggtgcgttgc ccgccgacca
      121 gcgcaaggcc gcgggcgagg cgatcaacca ggcgcgcgac gcgctcggcg acgcgctggc
      181 cacccgcaag gccgcgctgg aaggcgccgc gctcgacgcg cgcctggcca ccgagacgat
      241 cgacgtcagc ctgccgggcc gcgatgcctc gcgcggcggc ctgcacccgg tctcgcgcac
      301 gatggagcgc atcgccgaga tcttcggccg gctcggctac gcgcgcgccg aagggccgga
      361 gatcgaggac gactggcaca acttcgaggc gctgaacttc ccgccgcacc acccggcgcg
      421 cgcgatgcac gataccttct acatgcagcc cgacggcagc ggcgtcgcgc ggctgctgcg
      481 cacccacacc tccggcgtgc aggttcgcta catgctcggc aaccagccgc cgctgcgcat
      541 gatcgcgctg ggcaaggtct accgcagcga cagcgaccag acccacacgc cgatgttcca
      601 ccagtgcgag gggctgctgg tcgacgagca tgcgagtttc gccgacctca agggcaccct
      661 cgccgagttc gtgcgcgcgt tcttcgagcg cgatttcgaa atgcgcttcc gtccgagcta
      721 cttccccttc accgagccct cggccgaagt cgacatcgcc tggcagcagc ccgacggcag
      781 cacgcgctgg ctggaggtgc tcggctgcgg catggtgcat cccaacgtgc tgcgcaacgt
      841 cggcatcgat cccgaacgct acacgggctt cgccttcggc ctcggcgtcg agcgcttcgc
      901 catgctgcgc tacggcgtcg acgacctgcg cagcttcttc gacaacgacg tgcgcttcct
      961 gcgccagttc gcctgaggac cgccgcatga agttcagcga aaactggttg cgccagcacg
     1021 tccgcaccga cgcctcgcgc gaggagctcg cggcgacgct caccgcgatc gggctcgagg
     1081 tggaggacgt gacgccgctc ggcgcgggcc tcggcggcgt ggtcgtcgcg cgcatcgtcg
     1141 agtgcgcgaa acaccccgag gccgaccggc tgcaggtctg ccaggtcgat gccggcggcg
     1201 cgcggctgca gatcgtctgc ggcgcgccga acgcacggcc ggggctggtc gcgccgctcg
     1261 ccaccatcgg cgcccgcatc ggcgggatca ccatcaaggc ggcgaagctg cgcggcgtcg
     1321 agtcgaacgg catgctgtgc tcggcgaagg aactcgggct ggacagcgac gcttccggcc
     1381 tgctggaact gcccggcgat gcgccggtcg gcgcgccgct tgcggggttc ctcggcctgc
     1441 cggatgccag tttcgagctg aagctcacgc ccaaccgcgc cgactgcttc agcgtgcgcg
     1501 gcatcgcgtt cgacgtcgcc gccgcgtgca acagcgaagt cgcgccgttc gacgtcgagc
     1561 cggtgccggc ggcatccgcc gcgtccctgc cggtcgaact gcacgcgggc gccgatgcgc
     1621 cgcgctacgc cggccgcgtc atcgagggcg tcgatgcgtc gcgccccacg ccggcctgga
     1681 tggccgagcg cctgcgccgt ggcggcatcc gtccggtcag cctgctggtc gacgtgaccc
     1741 agtacgtgat gctggagctc ggccagccga tgcacgcgtt cgaccgcgac ctgctgcgcg
     1801 ggccggtcgg cgtgcggcgc gcgcgcgcgg gagagtcgct caggctgctc gacggccgcg
     1861 acgtcgcgct cgaccccgag ttcctgctgg tcaccgacgc ggaccgcgcg gtcgcgctgg
     1921 ccggcgtgat gggtggtttg gatacccgcg tgaccgatgc gacccgcaac gtcttcctcg
     1981 aagccgcgca cttcgcgccg gcggcgatca tcggccgcgg gcgccggctc ggcctgcaca
     2041 ccgacgcggg gcatcggttc gagcgcggcg tcgatccgga actcccgcgc caggcgatcg
     2101 agcatgcgac ccgcctgatc ctc
//
LOCUS       DATIQC010000387         1760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_131325, whole genome shotgun sequence.
ACCESSION   DATIQC010000387 DATIQC010000000
VERSION     DATIQC010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131325"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..540
                     /locus_tag="VLM17_08290"
     CDS             <1..540
                     /locus_tag="VLM17_08290"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003653591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016615 - malate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HSR65581.1"
                     /translation="LPAKNFTAMLRLDHNRALSQLANKAGVAVADIEKLVVWGNHSPT
                     MYPDYRFATAGGASLKDKINDADWNANDFIPKVGKRGAAIIEARGLSSAASAANAAID
                     HMRDWALGTNGEWVTMGVPSDGSYGIPEGVIYGVPVTTANGEYTRVADLPVDEFSRKA
                     MDKTLAELEEERAGVAHLL"
     gene            589..1470
                     /gene="prpB"
                     /locus_tag="VLM17_08295"
     CDS             589..1470
                     /gene="prpB"
                     /locus_tag="VLM17_08295"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008217354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046421 - methylisocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HSR65582.1"
                     /translation="MAEMQSAGARFRAAVAAESPLQVMGAITAYAGLMAKRVGYKALY
                     LSGGGVAANSLGMPDLGISTMEDVLTDARRIVDATQMPLLVDIDTGWGGAFNIARTVR
                     SFERAGVAAVHMEDQVGQKRCGHRPGKEVVPRDEMVDRVKAAVDARTDPGFVIMARTD
                     AAAVEGVDAAIERAVAYVEAGADMIFPEAMKTLEDYRRFRAAVKVPILANLTEFGSTP
                     FFTTGELRSANVDIALYCCGAYRAMNKAALNFYETVRREGTQKDIIDTLQTRAELYDF
                     LGYHAYEDKLDHLFAKK"
     gene            1481..>1760
                     /locus_tag="VLM17_08300"
     CDS             1481..>1760
                     /locus_tag="VLM17_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HSR65583.1"
                     /translation="MSEQVLPKAKKSVALSGTAAGNTALCTVGRSGNDLHYRGYDIKD
                     LATQSTFEEVAHLLVHGVLPTASQLKAYKAKLGRLRGLPAIVQEALELV"
BASE COUNT          323 a          599 c          600 g          238 t
ORIGIN      
        1 ctgccggcga agaacttcac cgcgatgctg cgcctcgacc acaaccgcgc gctgtcgcag
       61 ctggccaaca aggccggcgt ggccgtcgcc gacatcgaga agctggtcgt gtggggcaac
      121 cacagcccga ccatgtaccc ggactaccgc ttcgccaccg cgggcggcgc atcgctgaag
      181 gacaagatca acgacgccga ctggaacgcg aacgatttca ttcctaaggt gggcaagcgc
      241 ggcgcggcga tcatcgaagc ccgcggcctg tcctcggccg cctcggccgc caacgccgcc
      301 atcgaccaca tgcgcgactg ggcgctgggc accaacggcg aatgggtgac catgggcgtg
      361 ccgtcggatg gcagctacgg cattcccgag ggcgtgatct acggcgtgcc ggtgaccacc
      421 gccaacggcg agtacacccg ggtcgccgac ctgccggtcg acgagttcag ccgcaaggcg
      481 atggacaaga ccctggccga actcgaggaa gagcgcgcgg gcgtcgccca cctgctctga
      541 gtcaccatga ggcgaccgca aggtcgcctc gcgctatgga agacccacat ggctgagatg
      601 caatccgcgg gcgcgcgctt ccgcgccgcc gtcgccgccg aatcgcccct gcaggtgatg
      661 ggagcgatca ccgcctacgc gggcctgatg gccaagcggg tcggctacaa ggcgctgtac
      721 ctgtcgggcg gtggtgtcgc agccaactcg ctcggcatgc ccgacctcgg catctcgacg
      781 atggaggacg tgctgaccga tgcgcggcgg atcgtggacg ccacgcagat gccgctgctg
      841 gtcgacatcg acaccggctg gggcggcgcg ttcaacatcg cgcgcaccgt ccggagcttc
      901 gagcgcgccg gcgtcgcggc ggtgcacatg gaagaccagg tcgggcagaa gcgctgcggc
      961 caccggccgg gcaaggaagt ggtgccgcgc gacgagatgg tcgaccgggt caaggcggcg
     1021 gtcgacgcgc gcaccgaccc gggcttcgtc atcatggcgc ggaccgacgc ggccgcggtc
     1081 gaaggcgtcg acgccgcgat cgagcgcgcg gtggcctacg tcgaggcggg cgcggacatg
     1141 atcttccccg aggcgatgaa gacgctcgag gactaccgcc ggttcagggc cgcggtgaag
     1201 gtgccgatcc tcgccaacct caccgagttc ggctcgaccc cgttcttcac caccggggaa
     1261 ctgcgctcgg cgaacgtgga catcgcgctt tactgctgtg gcgcctaccg cgccatgaac
     1321 aaggcggcgc tgaacttcta cgagacggtg cgccgagaag gcacgcagaa ggacatcatc
     1381 gatacgttgc agacacgcgc cgagctctac gacttcctgg gctaccacgc ctacgaagac
     1441 aagctcgacc acctattcgc gaagaagtga gagcagacgc atgagcgagc aagtgcttcc
     1501 gaaggccaag aagtccgtcg cgctgtccgg cacggcggcg ggcaataccg cactgtgcac
     1561 cgtcggccgc agcggcaacg atctccacta ccgcggctac gacatcaagg acctggcgac
     1621 gcagtcgacg ttcgaggaag tcgcgcacct gctcgtgcac ggcgtgctcc ccaccgcctc
     1681 gcagctgaag gcctacaagg cgaagctcgg gcgcctgcgc gggctgccgg cgatcgtgca
     1741 ggaagcgctc gaactggtgc
//
LOCUS       DATIQC010000388         4581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_378700, whole genome shotgun sequence.
ACCESSION   DATIQC010000388 DATIQC010000000
VERSION     DATIQC010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4581
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_378700"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..585)
                     /locus_tag="VLM17_08305"
     CDS             complement(28..585)
                     /locus_tag="VLM17_08305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65584.1"
                     /translation="MLLLLFSGMASAAQAPSTFMGECVKEVTYQVLDHQSVTLHEIPS
                     GPIPEQTGHMRFPLAGPFVSRAADGQPPRYHWGYAVEFLDGSVPTRVLIEDVTGQAPL
                     AMVDDGTPKLARASLPTWNGDATDCVIRRDNPCAAWMFANDRQRFILRVTATLADGTT
                     DTLYQAIQFEPDSIHALLDAMGIAR"
     gene            complement(640..2172)
                     /locus_tag="VLM17_08310"
     CDS             complement(640..2172)
                     /locus_tag="VLM17_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HSR65585.1"
                     /translation="MAHPVLTALGLGAIESGTYLGNGEWSKTADAGVLEPVNPTDGSV
                     LAKVNASSAADYATIVERAQAAFKVWRTTPAPRRGEAIRLCAEALRAHKDALGSLVAL
                     EMGKSKPEGDGEVQEMIDIGEFAVGLSRQLYGLTMHSERPGHRMYEQWHPIGLVGIIS
                     AFNFPVAVWAWNAFVAAVCGDISIWKPSPKTPLSAVAAMRTCNAALKAGGFPDIFFLF
                     NDAGSDLAQTFVDDRRVPLISFTGSTKVGRMVGERVAQRMGRSLLELGGNNAIIVDPT
                     ADLKLAIPAIVFGAVGTAGQRCTTTRRLFVHESIYDEVLGKLVTAYKQVEGKIGDPTD
                     PKNLMGPLNSSDGVKAYLDAIAQAKAAGGTVETGGTAIEGAGFFVRPAIVTGLSNDAA
                     IVQHETFAPILYVMKFASLDEAIHLQNDVPQGLSSSIFTTNLKAAEAFLGASGSDCGI
                     ANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWKAYMRRQTNTINYSDALPLAQGIKF
                     DL"
     gene            complement(2289..2362)
                     /locus_tag="VLM17_08315"
     tRNA            complement(2289..2362)
                     /locus_tag="VLM17_08315"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2326..2328),aa:Arg,seq:cct)
     gene            complement(2353..4194)
                     /locus_tag="VLM17_08320"
     CDS             complement(2353..4194)
                     /locus_tag="VLM17_08320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HSR65586.1"
                     /translation="MRLAAIEALPLQPALAWVLCAIVLAGSARMLWHWLRAPVRPRAW
                     RIAALLVLQCAGAFLLWRVLFPPPVHAPAGLLVVATADADRASSDAVPAGARIVALPE
                     APPLAGAARAPDLATALRRHPGTTRLQVLGGGLEPRDLDATRGLAVEFLPAPLPPGLV
                     ALWPPRVVQAGRRFEVVGRAHALPQARVELLDPAGEVVARAPPGADGEFRLAGVARAP
                     GPSAWTLRLRDRDGARVEDAPLPLDVQPATRLRVLVLAGAPNPELKYLRRWASDAGLA
                     LDTRIALGAGMRMADAGARLDAGALAAHDLVLVDARSWEALGPGRASLFAAVRGGLGL
                     LLQLPYATSPAERSALHRLGFVATAGRATDVRPRGDGTRAAARPDEDQPTLTRGPLRI
                     AGADAVPLLPAADGQPLAWWRAHGLGRIGIAGFDDSYRLVLAGQGERHGDLWATLFST
                     LARPRASPRAALAGEARVGARAVLCGLPAPATVDAPDGRRFRLLRDPASGARACAALW
                     PRVPGWHLLHADGGTQAFFVYERGALPGVRAARLRAGTLAATGTAPVSAPGPAVPGPR
                     WPWFLGWLALATVGWWLERSRLGRAVPAGAARTTPRRFMRKSPPSAP"
     gene            complement(4191..>4581)
                     /locus_tag="VLM17_08325"
     CDS             complement(4191..>4581)
                     /locus_tag="VLM17_08325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65587.1"
                     /translation="APPVDEGRRLTGKRDGLGDRADVLAPAPAADPVPARAWLALQDS
                     AARAPLDVDALERWVRGLATHGGDPLAVLAAIDAVRQDPACVRCRARLRAALWPLLPR
                     PPAATGARARADAAGRAYLEALGEAVP"
BASE COUNT          640 a         1637 c         1729 g          575 t
ORIGIN      
        1 aggaaggggc gggcgaggct gtacacgtca gcgggcgatc cccatcgcgt cgagcagggc
       61 gtggatcgaa tccggctcga actgtatcgc ctggtacagg gtgtcggtcg tgccgtccgc
      121 cagcgtcgcg gtcacccgca ggatgaagcg ctgcctgtcg ttcgcgaaca tccaggcggc
      181 gcacggattg tcccgccgga tgacgcagtc ggtggcgtcg ccattccacg tgggcaggga
      241 cgcccgcgcc agcttcggcg tgccgtcgtc gaccatggcg agcggagcct gcccggtgac
      301 atcctcgatc agcacgcggg tcgggacgct gccgtccagg aactcgaccg catagcccca
      361 gtggtagcgg ggcggctggc cgtcggcggc gcgcgagacg aagggcccgg ccaggggaaa
      421 ccgcatgtgc ccggtctgct ccggtatggg gcccgacggg atttcatgca gggtcacgga
      481 ctggtggtcg agcacctggt aggtgacctc cttcacgcat tcgcccatga acgtcgatgg
      541 cgcctgcgcg gcggacgcca tcccggaaaa cagcagcagc agcacgcagc agatcggtcc
      601 ttccatggcg ctctccttcc ttgaatgccg gcgatgcggc tagaggtcga acttgatgcc
      661 ctgcgccagc ggcagcgcgt ccgaatagtt gatcgtgttg gtctgccggc gcatgtacgc
      721 cttccacgca tcggagcccg attcgcggcc accgccggtt tccttctcgc cgccgaaggc
      781 accgccgatc tcggcgcccg aggtgccgat gttgacgttg gcgatgccgc agtcggagcc
      841 cgaagcgccg aggaaggctt cggccgcctt gaggttggtg gtgaagatcg acgaggacag
      901 gccctgtggc acgtcgttct gcaggtggat cgcctcgtcg agcgaagcga acttcatgac
      961 gtacaggatc ggcgcgaagg tctcgtgctg gacgatcgcg gcgtcgttgg acaggccggt
     1021 gacgatggcc ggccggacga agaagccggc gccctcgatc gcggtgccgc cggtctcgac
     1081 cgtgccgccg gccgccttcg cctgcgcgat cgcgtcgaga taggccttga ccccgtcgct
     1141 gctgttgagc gggcccatca ggttcttcgg gtcggtcggg tcgccgatct tgccctcgac
     1201 ctgcttgtag gcggtgacga gcttgccgag cacctcgtcg tagatcgact catgcacgaa
     1261 caggcggcgc gtggtggtgc agcgctggcc ggcggtgccg accgcgccga acacgatcgc
     1321 cgggatcgcc agcttcaggt cggccgtcgg gtcgacgatg atcgcgttgt tgccaccgag
     1381 ctccagcagc gagcggccca tgcgctgcgc gacgcgctcg ccgaccatgc ggccgacctt
     1441 cgtcgacccg gtgaagctga tgagcgggac gcggcggtcg tcgacgaagg tctgcgcgag
     1501 gtcgctgccg gcgtcgttga acaggaagaa gatgtcgggg aagccgccgg ccttgagcgc
     1561 cgcgttgcag gtcctcatcg ccgcgaccgc cgacagcggc gtcttcggcg acggcttcca
     1621 gatcgagatg tcgccgcata ccgccgcgac gaacgcattc cacgcccaca ccgcgaccgg
     1681 gaagttgaac gccgagatga tcccgaccag gccgatcgga tgccactgct cgtacatgcg
     1741 gtggcccggg cgctcgctgt gcatggtcag gccgtagagc tggcgcgaca ggccgacggc
     1801 gaactcgccg atgtcgatca tctcctgcac ctcgccgtcg ccttccggct tcgacttgcc
     1861 catctccagc gcgaccagcg aaccgagcgc gtccttgtgc gcgcgcagcg cctcggcgca
     1921 caggcggatc gcctcgccgc ggcgcggcgc cggcgtcgtg cgccagacct tgaaggcggc
     1981 ctgcgcgcgc tcgacgatcg tggcgtagtc cgcggccgac gacgcgttca ccttcgccag
     2041 cacgctgccg tcggtgggat tgaccggttc cagcacgccc gcgtccgcgg tcttcgacca
     2101 ctcgccgttg ccgaggtagg tgcccgattc gatggcgccg aggccgaggg cggtgaggac
     2161 ggggtgggcc atcgaaaaac tcctgctttc attgagaagt cggcacatgg atgtgccggc
     2221 tcttgcggag ggatccgcgc atgtccgcac atggatgtgc gggctctcgc agagggatct
     2281 gcatgacgcg gccccgacac gattcgaacg tgcgacctgt cccttaggag gggaccgctc
     2341 tatccagctg agctacgggg ccgaaggcgg cgattttcgc atgaaccggc gcggggtcgt
     2401 tcgggccgcg cccgcgggga ccgcacgccc cagccgcgag cgctccagcc accagccgac
     2461 cgtcgccagc gcgagccagc ccaggaacca cggccaccgc gggccgggca cggcggggcc
     2521 cggcgcggag acgggggcgg tcccggtggc cgccagggtg cctgcgcgca gccgcgccgc
     2581 gcgcacgccg ggcagggccc cgcgctcgta gacgaagaac gcttgcgtgc cgccatcggc
     2641 gtgcagcagg tgccagcccg gcacgcgcgg ccacagcgcc gcgcaggcgc gtgcgccgct
     2701 ggccggatcg cgcagcagcc ggaaacgcct gccgtcgggg gcgtcgaccg tcgccggcgc
     2761 cggcaacccg cacagcacgg cgcgtgcgcc cacgcgagcc tcgcccgcga gggccgcgcg
     2821 tggcgatgcg cgcggtcgcg cgagggtgga gaacagcgtg gcccagaggt cgccgtggcg
     2881 ttcgccctgg ccggcgagca ccagccggta gctgtcgtcg aagccggcga tgccgatgcg
     2941 accgaggccg tgcgcgcgcc accaggcgag cggctggcca tcggcggcgg gaagcagcgg
     3001 aacggcatcg gcgcccgcga tgcgcagcgg gccgcgggtc agcgtcggct ggtcttcgtc
     3061 cggacgggcg gccgcgcgcg tgccgtcgcc gcgcgggcgg acgtcggtgg cgcgcccggc
     3121 cgtcgcgacg aacccgagcc ggtgcaacgc gctgcgctcc gcgggcgagg tggcgtaagg
     3181 caactgcagc agcaggccga gcccgccgcg caccgcggcg aacaggctcg cgcggcccgg
     3241 cccgagcgcc tcccagctgc gcgcgtcgac cagcacgaga tcgtgggcgg cgagcgcgcc
     3301 ggcatcgagg cgcgcaccgg catccgccat ccgcatgccg gcgccgagcg cgatgcgggt
     3361 gtcgagcgcg aggccggcgt cgctggccca gcgtcgcagg tacttgagtt cggggttggg
     3421 cgcgccggcg agcaccagca cgcgcaggcg cgtcgccggc tgcacgtcga gcggcagcgg
     3481 cgcgtcctcg acgcgcgcgc catcgcgatc gcgcaggcgc agcgtccagg ccgacgggcc
     3541 cggcgcgcgc gcaacgccgg ccaggcggaa ttcgccgtcg gcaccgggcg gcgcgcgcgc
     3601 gacgacctcg ccggcggggt ccagcagttc gacgcgtgcc tgcggcagcg cgtgcgcgcg
     3661 gccgacgacc tcgaagcggc gcccggcctg cacgacgcgc ggtggccaca gcgcgaccag
     3721 cccgggcggc aacggcgcgg gcaggaactc gaccgccagc ccgcgcgtgg cgtcgagatc
     3781 gcgcggttcg aggccgcctc ccagcacctg caggcgggtg gtgccgggat ggcggcgcag
     3841 cgcggtggcg aggtcgggcg cgcgcgccgc gccggcgagt ggtggtgctt ccggcaaggc
     3901 gacgatccgt gcgccggccg gcaccgcatc cgacgacgcg cggtcggcat cggcggtggc
     3961 caccaccagc aggccggcgg gggcgtgcac cggcggcggg aacaacacgc gccacagcag
     4021 gaacgcaccg gcgcactgca gcacgagcag ggctgcgatg cgccaggcgc gcggccgcac
     4081 cggagcgcgc agccagtgcc acagcatccg cgcgctgccg gcgagcacga tggcgcacag
     4141 cacccacgca agcgcaggct gcagcggcag cgcctcgatc gccgcaagcc tcatggcacc
     4201 gcctccccga gcgcttcgag ataggcgcgc ccggcggcat cggcgcgcgc gcgcgcgccg
     4261 gtggcggcag gcgggcgcgg cagcagcggc cacagcgccg cgcgcaggcg ggcccggcag
     4321 cggacgcacg ccgggtcctg cctgaccgcg tcgatcgccg cgagcacggc gagcggatcc
     4381 ccgccgtgcg tggccaggcc gcgcacccag cgttcgagcg catcgacgtc gagcggtgcg
     4441 cgcgcggcgc tgtcctgcag cgcgagccag gcacgcgccg gcaccggatc cgcggccggc
     4501 gccggcgcca gtacgtcggc gcgatcaccg agtccgtcgc gcttgccggt gaggcggcgg
     4561 ccctcgtcga ccggtggcgc c
//
LOCUS       DATIQC010000389         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_414474, whole genome shotgun sequence.
ACCESSION   DATIQC010000389 DATIQC010000000
VERSION     DATIQC010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414474"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..129)
                     /locus_tag="VLM17_08330"
     CDS             complement(<1..129)
                     /locus_tag="VLM17_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010481850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HSR65588.1"
                     /translation="MRALSPVRVVLLVVLAALLSGCGYNQIQQKDESVKAGWSEVIN"
     gene            complement(193..921)
                     /locus_tag="VLM17_08335"
     CDS             complement(193..921)
                     /locus_tag="VLM17_08335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HSR65589.1"
                     /translation="MLADPQTWILLLTLSSIEIVLGIDNLVFISIAVSKLPHASRERA
                     RRFGIAAACVTRVALLLTLAYLAHMKEDLFSVFGHGFSVRDLVLLLGGVFLVFKGVME
                     IRDQIAGEPESEDVHTRPADSFVAVIAQIAVIDIVFSLDSVIAAVGMAEQYVVVMVAA
                     ILLAVAVMLLASAPLGRFIDNNPTIKMLALAFIVLIGAFLVAEGLAVHVPKAYVYGPM
                     GFSAAVECLNLWAKRRAGLRSADD"
     gene            complement(959..1339)
                     /locus_tag="VLM17_08340"
     CDS             complement(959..1339)
                     /locus_tag="VLM17_08340"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004426026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HSR65590.1"
                     /translation="MADEIGHLPRRPGRILLATKWSLQGLRAAWLHESSFRLEIYLLA
                     LLGPAGLWLGQGPIERVLLVGSCIVVLGAELLNSAIEAVIERYGGEHHELAGRAKDMG
                     SAAVFVLMLNVILTWALILGPRYL"
     gene            1574..>3034
                     /locus_tag="VLM17_08345"
     CDS             1574..>3034
                     /locus_tag="VLM17_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007809564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HSR65591.1"
                     /translation="MNTLARPSQTRSFSTVFLIEMWERFGYYGMAALLVLFMVQKLGY
                     SDDRANLTWGAFTALVYAAPAIGGWIGDKVLGARRCMTIGAVILGLGYLLLSVPSDNT
                     ALLYGAMGVIVVGNGLFKSNAANLVRRIYEGDDAKIDSAFTLYYMAVNIGSTFSMIAT
                     PIVAAKWGWHAAFAVCCAGLVLGMLNYMLMHRTLAHVGSVPDDAPIDWGKLGMVLGVG
                     AALVFAVSFVLQHNEIAKALVWLAGAVILGIFVWLIARSDASERSGLIVALILTIETI
                     LFFIFYQQMSTSLTLFALRNVDPGQTLFGLHLFDWIPAQYQALNPIWIFALSPPLAWL
                     YTRMGKSGRDLPIAAKFAIGFVVVAIGFFIFGISGGTAVDGKVSSWYMVWGYGFYSLG
                     ELLVSGLGLAMMARYVPARMGGFMMGAYFVATGISQYLGGIVANYASVPDNITDPLQT
                     MPIYTSLFSKLGWAGIACTVIALAVLPLMRKLSAQHH"
BASE COUNT          491 a         1064 c         1004 g          475 t
ORIGIN      
        1 gttgatcacc tcggaccagc cggccttcac cgactcgtcc ttctgctgga tctggttgta
       61 gccgcagccg ctcagcagcg cggcgaggac gacgagcagc acgacgcgga cgggcgagag
      121 ggctcgcatg gcaggcgctc cagtaggtcg gaccggcatt gcagcatcgc ccggcggggc
      181 gtgcaaccgc cgtcagtcgt cggccgagcg cagcccggcg cgccgcttgg cccacaggtt
      241 caggcactcg accgccgccg agaaccccat cgggccgtac acgtaggcct tcggcacgtg
      301 gacggccagg ccctcggcga ccaggaacgc gccgatcagc acgatgaaag ccagcgccag
      361 catcttgatc gtcgggttgt tgtcgatgaa gcggccgagc ggcgcggacg ccagcagcat
      421 caccgccacc gcgagcagga tcgccgccac catcaccacc acgtactgct cggccatgcc
      481 gaccgcggcg atcaccgagt cgagcgagaa cacgatgtcg atcaccgcga tctgcgcgat
      541 caccgccacg aaggagtccg cgggccgggt atgcacgtcc tcggattcgg gctcgcccgc
      601 gatctggtcg cggatttcca tcacgccctt gaacaccagg aagacgccgc ccagcagcag
      661 caccaggtcg cgcaccgaga acccatggcc gaagaccgag aacaggtcct ccttcatgtg
      721 cgccaggtag gccagcgtca gcagcagcgc gacgcgggtg acgcaggccg cggcgatgcc
      781 gaagcggcgc gcgcgctcgc ggctggcgtg cggcagcttg ctgaccgcga tcgagatgaa
      841 caccaggttg tcgatgccga gcacgatctc gatcgagctc agcgtgagca gcaggatcca
      901 ggtctgcgga tccgccagca tggacaggat caagcagctg ccctcatcag gtatgcgctc
      961 acaggtagcg cgggccgagg atcagcgccc aggtcaggat gacgttgagc atcagcacga
     1021 acaccgcggc cgagcccatg tccttggcgc ggccggcgag ctcgtggtgc tcgccgccat
     1081 agcgctcgat caccgcctcg atcgccgaat tgagcagttc cgcgccgagc acgacgatgc
     1141 agctgccgac cagcagcacg cgctcgatcg gcccctgccc cagccacagc ccggccgggc
     1201 ccaggagggc gagcaggtag atctccaggc ggaacgagga ttcgtgcagc caagcggcgc
     1261 gcaggccctg cagcgaccac ttggtcgcca gcaggatgcg cccggggcgg cgcggcaggt
     1321 ggccgatctc gtccgccatc aggacaccgc cggcgagggg aaggccgcgg gaagctgcgg
     1381 gtggctgtac atgaatgcgg gtgacgtccg ggacgcggcc gcggagccgc cgcgggattc
     1441 tgccacaagg gcccgccccg gcccgcgtcg ggctggtccc cggtgccgga agcgtgcgcc
     1501 cgcgtcatga cattccgtac acgctggggc accatcggcc ggatcgaatg gcgatcccgg
     1561 ccggcaccac cgcatgaata ccctcgcaag acccagccag acccgctcct tcagcaccgt
     1621 gttcctcatc gagatgtggg agcgcttcgg ctactacggc atggcggcac tgctggtgct
     1681 gttcatggtc cagaagctcg gctacagcga cgaccgggcc aacctgacct ggggcgcgtt
     1741 caccgcgctg gtgtacgcgg cgccggcgat cggtggctgg atcggcgaca aggtcctggg
     1801 cgcccgccgc tgcatgacca tcggcgcggt catcctcggc ctcggttacc tgctgctctc
     1861 cgtcccctcc gacaacaccg cgctgctgta cggcgcgatg ggcgtgatcg tcgtcggcaa
     1921 cggcctgttc aagtccaacg ccgccaacct ggtccgccgc atctacgagg gcgacgacgc
     1981 caagatcgac agcgcgttca ccctgtacta catggcggtg aacatcggct cgacgttctc
     2041 gatgatcgcc acgccgatcg tggccgcgaa gtggggctgg catgccgcgt tcgccgtgtg
     2101 ctgcgccggc ctggtgctcg gcatgctcaa ctacatgctg atgcaccgca ccctcgccca
     2161 cgtcggctcg gtgccggacg acgcgccgat cgactggggc aagctcggca tggtgctcgg
     2221 cgtcggcgct gcgctggtgt tcgccgtgtc cttcgtgctg cagcacaacg agatcgccaa
     2281 ggcgctggtg tggctcgccg gcgcggtgat cctggggatc ttcgtctggc tgatcgccag
     2341 gagcgacgcg tccgagcgct ccggcctgat cgtcgcgctg atcctcacca tcgagacgat
     2401 cctgttcttc atcttctacc agcagatgtc gacctcgctg acgctgttcg cgctgcgcaa
     2461 cgtcgacccc ggccagaccc tgttcggcct gcacctgttc gactggatcc cggcgcagta
     2521 ccaggcgctc aacccgatct ggatcttcgc gctcagcccg ccgctggcct ggctctacac
     2581 ccgcatgggc aagagcggcc gcgaccttcc gatcgccgcc aagttcgcga tcggcttcgt
     2641 cgtcgtcgcc atcggcttct tcatcttcgg catcagcggc ggcaccgccg tcgacggcaa
     2701 ggtgtcgtcc tggtacatgg tctggggcta cggcttctac tcgctcggcg agctgctggt
     2761 gagcgggctg ggcctggcga tgatggcgcg ctacgtgccg gcgcggatgg gcggcttcat
     2821 gatgggcgcg tacttcgtcg ccaccgggat ctcgcagtac ctgggcggca tcgtcgccaa
     2881 ctacgcgagc gtgccggaca acatcaccga cccgctgcag accatgccga tctacaccag
     2941 cctgttcagc aagctgggct gggccggcat cgcctgcacc gtgatcgcgc tggccgtgct
     3001 gccgctgatg cgcaagctgt cggcacagca tcac
//
LOCUS       DATIQC010000390         6361 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_414507, whole genome shotgun sequence.
ACCESSION   DATIQC010000390 DATIQC010000000
VERSION     DATIQC010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6361
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414507"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VLM17_08350"
     CDS             <1..347
                     /locus_tag="VLM17_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl CoA-acyl carrier protein transacylase"
                     /protein_id="HSR65592.1"
                     /translation="SHTPLMRGAADKLAVAMNDIAWNSPSLPVVQNVDAQVHDGVASI
                     RDALVRQLYLPVQWTSCVQALAARGATRVGECGPGKVLAGLVKRIDKGLDARALGTVA
                     DFDAARNDWSNA"
     gene            344..1105
                     /gene="fabG"
                     /locus_tag="VLM17_08355"
     CDS             344..1105
                     /gene="fabG"
                     /locus_tag="VLM17_08355"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein]
                     reductase (NADPH) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HSR65593.1"
                     /translation="MSNDVLKGAALSGEVALVTGASRGIGAAIADELAAQGATVIGTA
                     TSDSGAAAIDERLKPSGGHGRKLDVTDAAAVESLIEAIGKESGAITILVNNAGITRDN
                     LLMRMKDEDWNAILDTNLTSVYRTCKAVMRGMMKARKGRIVNIASVVGVTGNPGQANY
                     AAAKAGIIAFSKSLAKEIGSRGVTVNVVAPGFIDTDMTRALPDTAREALVGQIALGRL
                     GEPADIARAVAFLAGPAGSYITGETLHVNGGMYMP"
     gene            1209..1448
                     /gene="acpP"
                     /locus_tag="VLM17_08360"
     CDS             1209..1448
                     /gene="acpP"
                     /locus_tag="VLM17_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HSR65594.1"
                     /translation="MSTIEERVKKIVVEQLGVKEEEVTNNASFVDDLGADSLDTVELV
                     MALEEEFECEIPDEEAEKITSVQQAIDYVKAHVKA"
     gene            1600..2841
                     /gene="fabF"
                     /locus_tag="VLM17_08365"
     CDS             1600..2841
                     /gene="fabF"
                     /locus_tag="VLM17_08365"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HSR65595.1"
                     /translation="MSKRRVVITGLGIVSPLGTDLASSWDGIVNGRSGIGPITHFDAS
                     AFPTRIAGEVKGFDPADWIPAKDVKKMDPFIHYGVAAATMALRDAGMETLGEEEAERI
                     GVAIGAGIGGLNGIEETTLKYSAGGPRKVSPFYVPSTIINMIAGHVSIMTGAKGPNIA
                     AVTACTTATHNIGLAMRMIQHGDADAMIAGGAEYATTPTSLGGFCAMKALSTRNEEPE
                     KASRPWDKDRDGFVMGDGAGILVLEEYERAKARGARIYCELTGFGMSGDAYHMTAPSE
                     SGEGAARCMVAAIRDAGINAGDIGYINAHGTSTPAGDLAETMAVKAALGEHAYRTMVS
                     STKSMTGHLLGAAGGIEAVFSAMALHTGVIPPTINLDNPSEGCDLDYVAHTARRQQVD
                     IALSNSFGFGGTNGTLVFKRA"
     gene            2908..4278
                     /locus_tag="VLM17_08370"
     CDS             2908..4278
                     /locus_tag="VLM17_08370"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HSR65596.1"
                     /translation="MLLTRPLRADLDLLDLQRLAPQRYPLLLESSAAGTAQGRWDLLL
                     AANGEPLVLGRDGITRGAGGAAVEGAFLDALDRHWSALRAPRDEPRWPFHGGWALFLS
                     YELATQVEPVLDLPAAPGALPVALALRCPAAVLRDRATGECCMVAEADQGGLLDAIAA
                     DVAGLARLPPLPGWRPPGPVEEDAPERFTDGVRRVLDYLAAGDVFQANLSRGWSARFD
                     VAPEPAALFRQLRRHNPAPFAGLFAGGGWAVVSASPERLVSVRGDVVETRPIAGTRPR
                     FAGDDDAARIRDLVGNPKERAEHVMLIDLERNDLGRVCVPGSVEVDELMTVESYAHVH
                     HIVSNVRGRLRADATPGEVIRAVFPGGTITGCPKVRCMQVIAELEEAGRGAYTGAFGW
                     LGRDGDMDLNILIRSAELEGGTDGGSSLRFRTGAGIVADSDPRRELDETRAKARGMLR
                     ALGVAG"
     gene            4275..5087
                     /gene="pabC"
                     /locus_tag="VLM17_08375"
     CDS             4275..5087
                     /gene="pabC"
                     /locus_tag="VLM17_08375"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008696 - 4-amino-4-deoxychorismate lyase
                     activity [Evidence IEA];
                     GO_process: GO:0008153 - para-aminobenzoic acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HSR65597.1"
                     /translation="MSARIFAGDRRIDAVPVDDRGLAYGDGLFETLRVHRGVAPWWDA
                     HWSRLAQGARRLGIPLPDPARVRAESDALFGDGGDGVLKLQLTRGSGGRGYAPPARPV
                     PTWIVSRHPLPAASAGLRLRWCETRLAVQPALAGIKHCNRLEQVLARRECEDAGVDDG
                     VLCDGDGAVVAATAANLFVLRDGGWLTPPVDRCGVAGVCRAHLLPVLQAREARLSPAG
                     VEGADALFLCNAVRGILVVDRLGARAFDPHPAVEGARRALARLHPAFAMETP"
     gene            5084..6133
                     /gene="mltG"
                     /locus_tag="VLM17_08380"
     CDS             5084..6133
                     /gene="mltG"
                     /locus_tag="VLM17_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019304129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HSR65598.1"
                     /translation="MSPKRKQRSRLGAFVFLVVLAVAGYLAWQRYAGFADAPLAGLSR
                     GESVSVAPGDSLARVVAKLRAAGVAAGSTAEWQLLARQLGAAGRIQVGEYALEPGTTP
                     RDLLERMRAGKVISHRFTIVEGWNIRELRAALAKSQPLGHKAGELDDAALMRALGHAG
                     EHPEGRFLPETYAYVRGDSDLDVLRRAHEAMEQALDAAWDARAADLPLRSKDEALILA
                     SLVEKETGVADERPQIAGVFLRRLQLGMRLQTDPTVIYGMGTRYAGNIHKADLLADNP
                     YNTYTRAGLPPTPIAMPGKAALQAATHPAPGDALYFVAVGDGSGRHVFTRSLAEHQAA
                     VQAYLQRYRQQRRAQ"
     gene            6130..>6361
                     /locus_tag="VLM17_08385"
     CDS             6130..>6361
                     /locus_tag="VLM17_08385"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014036194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006235 - dTTP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HSR65599.1"
                     /translation="MSDLVVQPRLVTLEGGEGAGKTTVIGALREALQRAGEDVVCTRE
                     PGGTPLGERIRALLLDPAHEPPAAETELLLMFA"
BASE COUNT          935 a         2316 c         2271 g          839 t
ORIGIN      
        1 cgtcgcatac gccgctgatg cgcggcgccg ccgataagct ggctgtcgcg atgaacgaca
       61 tcgcatggaa ttcgccgtcg ctgcccgtgg tgcagaacgt ggacgcgcag gtgcacgacg
      121 gtgtcgcgtc gatccgcgac gcgctggtgc gccagcttta cctgcccgtg cagtggacgt
      181 cgtgcgtcca ggcgctcgcc gcgcgcggcg cgacccgcgt cggcgaatgc ggccccggca
      241 aggtgctcgc cggcctggtc aagcgcatcg acaagggact ggacgcgcgc gcgctcggca
      301 ccgtcgccga cttcgacgcc gcccgcaacg attggagcaa cgcatgagca acgacgtgtt
      361 gaagggcgcg gccttgagcg gggaagtcgc gctggtcaca ggcgcgagcc gcggcatcgg
      421 cgcggcgatc gcggatgaac tcgccgcgca gggcgcgacc gtcatcggca ccgcgacctc
      481 cgacagcggc gccgccgcga tcgacgaacg cctgaagccc agcggcggcc acggccggaa
      541 gctcgacgtc accgacgccg ccgcggtcga gtcgctgatc gaggcgatcg gcaaggaatc
      601 cggcgcgatc accatcctcg tcaacaatgc cggcatcacc cgcgacaacc tgctgatgcg
      661 gatgaaggac gaggactgga acgccatcct cgacaccaac ctcaccagcg tctaccgcac
      721 ctgcaaggcg gtgatgcgcg ggatgatgaa ggcgcgcaag ggccgcatcg tcaacatcgc
      781 ctcggtggtc ggcgtgaccg gcaacccggg gcaggccaac tacgcggcgg cgaaggcggg
      841 catcatcgcc ttcagcaagt cgctggcgaa ggaaatcggt tcgcgcggcg tgaccgtcaa
      901 cgtggtcgcg ccgggcttca tcgacaccga catgacccgc gcgctgcccg atacggcccg
      961 cgaggccctg gtcggccaga tcgcgctcgg gcgcctcggc gagccggccg acatcgcccg
     1021 cgcggtcgcc ttcctggccg gccccgccgg ttcctacatc accggcgaaa ccctgcacgt
     1081 caacggcggc atgtacatgc cgtgacgctg aatccgcggc gccggcgcgg cccccggggt
     1141 tgcgcgcgac gccccgggct ttcccttaca ctatccgtct gaacagactc cgggaggagc
     1201 gagcacccat gagcaccatc gaagagcgcg tcaagaagat cgtcgtcgag cagcttggcg
     1261 tcaaggaaga ggaagtcacc aacaatgctt cgttcgtcga cgacctcggc gccgactcgc
     1321 tcgacaccgt cgagctcgtg atggcgctcg aggaagagtt cgagtgcgag atcccggacg
     1381 aggaagccga gaagatcacc tcggtgcagc aggccatcga ctacgtgaag gcgcacgtca
     1441 aggcctgacg tccaccatcc aggtccggcc ctgcgccgga ctgccgcggg gaaccgtcgc
     1501 agggcggcgc ccgtcgcggt cgccggggcc gcatcgcgcg gccccgcgca tttgtgcagc
     1561 agcattcgcc agcgtagggc gaagaccagg agtcggatca tgtccaagcg tcgcgtcgtc
     1621 atcaccggtc tcggcatcgt ttcgccgctg ggcaccgacc tggcctcgag ctgggacggc
     1681 atcgtcaacg gccgctcggg catcggcccg atcacccact tcgatgcgtc cgcgttcccg
     1741 acccgcatcg ccggcgaggt gaagggcttc gatccggccg actggatccc ggcgaaggac
     1801 gtcaagaaga tggacccctt catccactac ggcgtcgcgg ccgccacgat ggcgctgcgc
     1861 gatgccggga tggagacgct gggggaagag gaggccgagc gcatcggcgt cgccatcggc
     1921 gcgggcatcg gcgggctcaa cggcatcgag gaaacgacgc tcaagtactc ggccggcggc
     1981 ccgcgcaagg tctcgccgtt ctacgtgccg agcaccatca tcaacatgat cgccggccac
     2041 gtgtcgatca tgaccggcgc caagggcccg aacatcgccg cggtcaccgc gtgcaccacg
     2101 gcgacgcaca acatcggcct ggccatgcgc atgatccagc acggcgacgc cgacgcgatg
     2161 atcgccggcg gtgccgagta cgccaccacg ccgacctcgc tcggcggctt ctgcgcgatg
     2221 aaggcgctgt ccacccgcaa cgaggagccg gagaaggcat cgcgtccgtg ggacaaggac
     2281 cgcgacggct tcgtcatggg cgacggcgcc ggcatcctgg tcctcgagga atacgagcgc
     2341 gcgaaggcgc gaggcgcgcg catctactgc gagctgaccg gcttcggcat gagcggcgat
     2401 gcctaccaca tgaccgcgcc gagcgagagc ggcgagggcg ccgcacgctg catggtggcg
     2461 gcgatccgcg acgccggcat caatgccggg gacatcggct acatcaacgc gcacggcacg
     2521 tcgaccccgg cgggcgacct ggccgagacg atggcggtga aggccgcgct cggcgagcac
     2581 gcctacagga cgatggtcag ttccaccaag tcgatgacgg gccacctgct cggcgccgcc
     2641 ggcggcatcg aggcggtgtt ctcggcgatg gcgctgcaca ccggcgtcat cccgccgacc
     2701 atcaacctcg acaatccgtc cgaaggctgc gacctcgact acgtggcgca taccgcgcgc
     2761 cggcaacagg tcgacatcgc gctgtcgaac tcgttcggct tcggcggcac caacggcacg
     2821 ctggtgttca agcgcgcctg acgttccgca tgccggcaac aggatccccg ctgcggcggg
     2881 gatcgtcgtt tcggcgtccc gcacaccatg ctgctcaccc gtccgctccg tgccgacctc
     2941 gatctcctgg acctgcagcg ccttgcgccg cagcgctacc cgctgctgct cgaatcctcg
     3001 gcggcgggga ccgcgcaggg gcgctgggac ctgctgctgg cggcgaacgg cgagccactc
     3061 gtactggggc gcgacggcat cacccggggc gccggcggcg cggcggtgga gggagcgttc
     3121 ctcgatgcgc tcgaccgcca ctggagtgcg ctgcgcgcgc cgcgcgacga acctcgctgg
     3181 cccttccacg gcggctgggc gctgttcctc tcctacgaac tcgccacgca ggtcgagccg
     3241 gtgctggacc tgccggccgc gccgggcgcg ctgccggtcg cgctcgcgct gcgctgtccc
     3301 gcggcggtgc tgcgcgatcg cgccaccggc gaatgctgca tggtcgcgga agcggaccag
     3361 ggcggcctgc tcgacgcgat cgccgccgac gtcgcggggc tcgcacgcct gccgccgttg
     3421 cccggttggc gaccgcccgg gccggtcgag gaggacgcgc cggagcgctt caccgacggc
     3481 gtgcgccgcg tgctcgatta ccttgcggcc ggcgacgtgt tccaggccaa cctgtcgcgc
     3541 ggctggagcg cacgcttcga cgtcgcgccc gagcccgcgg cgctgttccg ccagctgcgc
     3601 cggcacaacc cggcgccgtt cgcgggcctg ttcgccggcg gcggctgggc ggtggtcagt
     3661 gcatcgcccg agcgcctggt gtccgtgcgc ggcgatgtcg tcgagacccg cccgatcgcc
     3721 ggcacccgcc cgcgtttcgc gggcgacgac gacgcggcgc gcatccgcga cctcgtcggc
     3781 aatccgaagg aacgggccga gcacgtgatg ctgatcgacc tcgagcgcaa cgacctcggc
     3841 cgcgtctgcg tgcccggcag cgtcgaggtc gacgagctga tgaccgtcga gagctacgcg
     3901 cacgtgcacc acatcgtcag caacgtgcgc ggccggttgc gcgccgacgc cacgcccggc
     3961 gaggtgatcc gcgcggtgtt cccgggcggc acgatcacgg gctgtccgaa ggtccgctgc
     4021 atgcaggtca tcgcggaact cgaggaggcg ggacgcggcg cctacaccgg cgcgttcggc
     4081 tggctcggcc gcgacggcga catggacctc aacatcctga tccgcagcgc cgagctggaa
     4141 ggcggcacgg atggcggaag cagcctgcgc ttccgcaccg gcgccggcat cgtcgccgac
     4201 tccgacccgc ggcgcgaact cgacgaaacg cgggcaaagg cgcgcgggat gctgcgcgcg
     4261 ctgggggtgg cagggtgagc gcgcgcatct tcgccggcga tcgccgcatc gacgcggttc
     4321 cggtcgacga ccgcggactg gcctatggcg acggcctgtt cgaaaccctg cgcgtgcacc
     4381 gcggcgtcgc gccgtggtgg gacgcgcact ggtcgcggct cgcgcagggc gcgcgcaggc
     4441 ttggaatccc gctgcccgac ccggcgcgcg tacgcgccga gtcggacgcg ctctttggcg
     4501 acggcggcga cggcgtgctg aagctgcagc tcacccgcgg cagcggcggg cgcggctacg
     4561 cgccgcccgc gcggccggtg ccgacctgga tcgtgtcgcg ccacccgctg cctgcggcct
     4621 ccgccggcct gcgcctgcgc tggtgcgaga cccgtctcgc cgtccagccc gcgctcgccg
     4681 ggatcaagca ctgcaaccgg ctcgaacagg tgctcgcgcg tcgcgaatgc gaggacgccg
     4741 gcgtcgacga cggcgtgctg tgcgacggcg acggggcggt ggtcgcggcg accgcggcca
     4801 acctcttcgt gctgcgcgac ggcgggtggc tgacgccgcc ggtcgatcgt tgcggcgtcg
     4861 ccggcgtctg ccgtgcgcac ctcctgcccg tcctgcaggc acgcgaggcg cgcctgtcgc
     4921 cggccggcgt cgagggcgcc gatgcccttt tcctgtgcaa cgcggtgcgc ggtatcctcg
     4981 tcgtcgaccg cctcggcgcg cgcgcgttcg atccccatcc ggcggtcgaa ggcgcgcggc
     5041 gcgcgctggc ccgcctgcac cccgccttcg cgatggagac gccgtgagcc cgaagcgcaa
     5101 gcaacgcagc cgcctcggcg ccttcgtgtt cctggtcgtg ctggcggtgg ccggttacct
     5161 cgcctggcag cgctacgcgg gcttcgccga tgcgccgctc gccggcctct cgcgcggcga
     5221 gagcgtgagc gtcgcgccgg gcgattccct cgcgcgcgtg gtcgcgaagc tgcgcgccgc
     5281 cggcgtggcc gccgggagca ccgccgaatg gcagctgctc gcgcgccagc tcggcgccgc
     5341 gggcaggatc caggtcggcg aatacgcgct cgagcccggc accacgccgc gcgacctgct
     5401 cgagcggatg cgcgcgggca aggtcatcag ccaccgcttc accatcgtcg aaggatggaa
     5461 catccgcgaa ttgcgcgccg cgctggccaa gtcgcagccc cttgggcaca aggccggcga
     5521 gctcgacgac gccgcgctga tgcgcgcgct cggccatgcc ggcgagcatc cggaaggccg
     5581 gttcctgccg gaaacctacg cctacgtgcg cggcgacagc gacctcgacg tgctgcggcg
     5641 cgcgcacgag gcgatggagc aggcgctcga cgcggcgtgg gatgcgcgcg cggccgacct
     5701 ccccctgcgc tcgaaggacg aggcgctcat cctcgcctcg ctggtggaga aggagaccgg
     5761 cgtcgccgac gagcgcccgc agatcgccgg cgtgttcctg cgccgcctgc agctcggcat
     5821 gcgcctgcag accgatccga ccgtgatcta cggcatgggc acgcgctacg ccggcaacat
     5881 ccacaaggcc gacctgctcg ccgacaaccc ctacaacacc tacacccgcg ccggcctgcc
     5941 gccgacgccg atcgcgatgc cgggcaaggc ggccctgcag gcggcgaccc acccggcgcc
     6001 gggcgacgcg ctgtacttcg tcgcggtcgg cgacggcagc gggcggcacg tgttcacccg
     6061 ttcgctggcc gaacaccagg cggcggtgca ggcctacctg cagcgctacc gccagcagcg
     6121 gcgcgcgcaa tgagcgattt ggtcgtgcag ccacggctgg tgacgctgga aggcggcgag
     6181 ggcgcgggca agaccacggt catcggcgcg ctgcgcgagg cgctgcagcg tgccggggaa
     6241 gacgtggtgt gcacgcgcga gccgggcggc accccattgg gcgaacgcat ccgcgcgctg
     6301 ctgctcgatc cggcgcacga gccccctgcc gcggagaccg agctgctgct gatgttcgcc
     6361 g
//
LOCUS       DATIQC010000391         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_697171, whole genome shotgun sequence.
ACCESSION   DATIQC010000391 DATIQC010000000
VERSION     DATIQC010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_697171"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..87)
                     /locus_tag="VLM17_08390"
     CDS             complement(<1..87)
                     /locus_tag="VLM17_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HSR65600.1"
                     /translation="MSKQSQWVAGINAVASAIEHDAEHVREVL"
     gene            complement(146..2401)
                     /gene="rnr"
                     /locus_tag="VLM17_08395"
     CDS             complement(146..2401)
                     /gene="rnr"
                     /locus_tag="VLM17_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005415881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HSR65601.1"
                     /translation="MRGAPPLHDPHAEREASRYEQPIASREMILAVLASSDGPMDADA
                     LAQRLGLAAPDRFEALSKRLGAMLRDGQLLQNRRGGYAPAERMDLVPGVVIANPDGFG
                     FLRPEGGGDDLFLPPFEMRKAMHGDRVLASVTGMDRRGRREGAIVEVLERRLNRLLGR
                     YIVEAGIGYVQPDDRRIQRNILIPPGEAGDAKPGQVVVAEITQAPDARRPPIGRVLTV
                     LGDRLTASLAVEAAIFGHDIPHEFPPQVLAEAAAVPLTVDEAMRSGRIDLRDLPLVTI
                     DGEDAKDFDDAVWCEPTRDGFRLVVAIADVSHYVRPGTPLDEEAQLRATSVYFPGFVV
                     PMLPETLSNGICSLNPRVDRLCFVCDMHIDREGEVTRSKFYEAVMNSHARLTYTQVWH
                     AVGDEATDEQREDAQQRIGGLLPQVERLHQLYRVLAKARARRGAIEFESSEVRFVLGA
                     QGEVTQAGMLPRNDAHKLIEECMIAANVEAARYILQKHIPAPFRIHDKPPEQKYADLG
                     EFLKEFKLRLPPWGKVQPGDFTALLKKIRDRPDAALLESVLLRSQSLAVYSHENLGHF
                     GLALEAYGHFTSPIRRYPDLLLHRAIKHGLAGGKAAGFRYSVHEMAALTLQCSERERR
                     ADEAEREVDERFRAAWMEQHVGGEFEGTISGVTSFGLFIELDDSKVNGLVHVTQLPND
                     SYHFDPVRRTLTGERHGREFRLGDRVRIVVLKASVEDRRIDFRLVEERDQGLPPLPPR
                     GKPAKRAKQKY"
BASE COUNT          347 a          895 c          931 g          408 t
ORIGIN      
        1 cagcacctcg cgcacgtgct cggcgtcgtg ttcgatggcc gacgccacgg cgttgatgcc
       61 ggcgacccac tgggattgct tgctcatgcg ggtattgtgc ccgaggtggc gacgggccac
      121 ccgcgggctc ccgcaaggaa gggggctagt acttctgctt ggcccgcttc gccggcttgc
      181 cgcgcggcgg cagcggcggc aacccctggt cgcgctcctc caccaggcgg aagtcgatcc
      241 ggcggtcctc cacgctcgcc ttcagcacga cgatgcgcac gcggtcgccg aggcggaact
      301 cgcggccgtg gcgttcgccg gtcagcgtgc ggcgcacggg atcgaagtgg taagagtcgt
      361 tcggcagctg ggtgacgtgg acgagtccat tgaccttgga gtcgtcgagt tcgatgaaca
      421 ggccgaagct ggtcacgccg ctgatggtgc cttcgaattc gccgccgacg tgctgctcca
      481 tccacgccgc gcggaagcgc tcgtcgacct cccgttcggc ctcgtcggcg cggcgctcgc
      541 gctcggagca ttgcagggtg agcgccgcca tctcgtgcac gctgtagcgg aaccccgcgg
      601 ccttgccgcc ggccagcccg tgcttgatcg cacggtgcag cagcaggtcg gggtagcggc
      661 ggatcggcga ggtgaaatgg ccgtaggcct cgagcgcgag tccgaagtgg ccgaggttct
      721 cgtgcgagta caccgccagc gactggctgc gcagcagcac cgactccagc agcgcggcat
      781 cgggccggtc gcggatcttc ttcagcagcg ccgtgaagtc gcccggctgc accttgcccc
      841 acggcggcag gcgcagcttg aactccttga ggaactcgcc caggtccgcg tatttctgct
      901 cgggcggctt gtcgtggatg cggaacggcg cagggatgtg cttctgcagg atgtacctcg
      961 cggcctcgac attggccgcg atcatgcatt cctcgatcag cttgtgcgcg tcgttgcgcg
     1021 gcagcatgcc ggcctgcgtg acctcgccct gggcgccgag cacgaagcgc acttcggagg
     1081 attcgaactc gatcgcgcca cgcctcgcgc gcgccttcgc cagcacccgg tagagctggt
     1141 gcagccgctc gacctgcggc agcaggccgc cgatgcgctg ctgcgcgtcc tcgcgctgct
     1201 cgtcggtcgc ctcgtcgccg accgcatgcc agacctgggt gtaggtgagg cgggcgtgcg
     1261 aattcatcac cgcctcgtag aacttcgagc gggtgacctc gccctcgcgg tcgatgtgca
     1321 tgtcgcacac gaagcacagc cggtcgacgc gcggattgag cgagcagatg ccgttggaca
     1381 gcgtctccgg aagcatcggc acgacgaacc cggggaaata caccgaggtc gcgcgcagct
     1441 gcgcctcctc gtcgagaggc gtgccggggc gcacgtagtg ggagacgtcg gcgatcgcca
     1501 cgaccaggcg gaaaccgtcg cgcgtcggct cgcaccacac cgcgtcgtcg aagtccttcg
     1561 catcctcgcc gtcgatggtg accagcggca agtcgcgcag gtcgatgcgt cccgagcgca
     1621 tcgcctcgtc gacggtgagc gggaccgcgg cggcttcggc cagcacctgc ggcgggaact
     1681 cgtgcgggat gtcgtggccg aagatcgccg cctccaccgc gagcgacgcg gtgaggcgat
     1741 ctccgagcac ggtgagcacg cggccgatcg gcggacgccg cgcgtccggc gcctgggtga
     1801 tctcggcgac gacgacctgg cccggcttcg catcccccgc ctcgcccggc gggatcagga
     1861 tgttgcgctg gatgcggcgg tcgtcgggct gcacgtagcc gatgccggcc tcgacgatgt
     1921 agcggccgag caggcggttg agcctgcgtt cgaggacctc gacgatcgcg ccctcgcgcc
     1981 gcccgcgccg atccatgccg gtgacgctgg ccagcacgcg gtcgccatgc atcgccttgc
     2041 gcatctcgaa cggcggcagg aacaggtcgt cgccgccgcc ctccgggcgc aggaagccga
     2101 agccgtccgg attggcgatg acgaccccgg gcacgaggtc catgcgctcg gccggtgcgt
     2161 acccgcccct gcggttctgc agcagctggc cgtcgcgcag catggccccg agccgcttgg
     2221 acagcgcttc gaaacgatcg ggcgcggcga gcccgaggcg ctgggccagc gcatccgcat
     2281 ccatcggccc gtcgctcgag gcgagcacgg cgaggatcat ttcgcggctg gcgatcggct
     2341 gctcgtagcg cgaggcttcg cgctccgcgt gcggatcatg cagcggtggc gcgccgcgca
     2401 cggcggcagg cttgtgcgtg ccacgcgagg tcgcggcgtc cggcagccag cccggacgcg
     2461 acggcttccc gcgcggggtg cgttcgggtg tggaggggga gttgtccgtg cgcttgtcgc
     2521 gccgggcctt gccgccggcg gtcgcggtgg ctttcctgcc gtcgcgaccg ctcccgcgct
     2581 t
//
LOCUS       DATIQC010000392         3129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_626392, whole genome shotgun sequence.
ACCESSION   DATIQC010000392 DATIQC010000000
VERSION     DATIQC010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626392"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..1373
                     /locus_tag="VLM17_08400"
     CDS             78..1373
                     /locus_tag="VLM17_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HSR65602.1"
                     /translation="MRPRTLDDMVGQQRLLGAASALRRAIQSGRMHSMILWGPPGCGK
                     TTLALLLAQYADADFRAISAVLSGLPEVRQVLAEAGHRFAEGRRTVLFVDEVHRFNKA
                     QQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVMEAVSVDDIVAALHRALA
                     DGERGLGGLGLQVSEGALREVAGAADGDVRRALTLLEIAAELAGGEGGAISEATLAQV
                     LADRTRRFDKGGEQFYDQISALHKSMRSSNPDAALYWLARMLDGGVDPAYLARRLTRM
                     AVEDVGLADPRALSMAIEAWDAYDRLGSPEGELALAQLVLYLASTAKSNAAYMAFNAA
                     KADVRAHGTLEVPLHIRNAPTKLMKQLGYGKGYQYDHDAEGGIALDQTGFPDALGERI
                     YYEPVARGMELKLKEKLDALRAARARARAGKAGDRDDGM"
     gene            1384..1767
                     /gene="crcB"
                     /locus_tag="VLM17_08405"
     CDS             1384..1767
                     /gene="crcB"
                     /locus_tag="VLM17_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007507721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HSR65603.1"
                     /translation="MNWGGLLAVGGGAALGAWARWALGLWLNALLPQLPMGTLAANLA
                     GGYLVGLALAWFALAEGVPPELRLLVVTGFLGGLTTFSTFSAEAVGLLARQHYGWAAA
                     HLALHLGGSLAATALGFATLRLLRS"
     gene            1770..2093
                     /locus_tag="VLM17_08410"
     CDS             1770..2093
                     /locus_tag="VLM17_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF190 domain-containing protein"
                     /protein_id="HSR65604.1"
                     /translation="MADCVYLKFFVLEQQRHDGQPLYQWLLRHAARLGLPGGSAFRAI
                     AGYGRHRVLHEAHFYELAGELPMEVVFVCERAEADRLVAEVGAAGLSLFHYRMPAESG
                     VTGER"
     gene            2253..>3129
                     /locus_tag="VLM17_08415"
     CDS             2253..>3129
                     /locus_tag="VLM17_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaB-like helicase C-terminal domain-containing
                     protein"
                     /protein_id="HSR65605.1"
                     /translation="MSARQGLRPEPRFDHRVEQLRVPPQSVEAEQAVLGGLMLAPDAY
                     DRVADLLVDADFYRRDHQLIYRAIRELAEKNRPYDAVTLGEWFESMGQSELVAGGAYL
                     IELASTTPSAANITAYAEIVRDKAVLRQLIEVGTVIVNDGFQPEGRETREILEQAEKN
                     VLAIAEAGARGKTDFTAVNDAMREAFDVLQTRYQNGGGVTGVPTGYTEFDEMTAGLQP
                     TDLIILAARPAMGKTTLALNMAEYAAMKTKKAVAVFSMEMSASQLALRLISSVGRVNA
                     TRLRTGQLEDEDWSRV"
BASE COUNT          457 a         1121 c         1114 g          437 t
ORIGIN      
        1 tggcgcggca gtcggagctg ttcacacgag ccgcggcgcc gcccaaggcc gcgccgcacg
       61 caccgctcgc cgagcgcatg cgcccgcgca cgctggacga catggtcggc caacagcgcc
      121 tactgggcgc cgcctccgcg ctgcgccgcg ccatccagtc ggggcgcatg cattcgatga
      181 tcctgtgggg cccgccgggc tgcggcaaga ccacgctggc gctgctgctg gcgcagtacg
      241 ccgacgccga cttccgcgcg atctcggcgg tgctgtccgg cctgccggag gtgcgccagg
      301 tgctggccga agccggtcac cgtttcgccg aaggccggcg caccgtgctg ttcgtcgacg
      361 aggtgcaccg cttcaacaag gcgcagcagg acgccttcct gccccacatc gagcgcggca
      421 ccatcctgtt cgtcggcgcg accaccgaga acccctcgtt cgagctcaac tccgcgctgc
      481 tgtcgcgctg ccgcgtgcac gtgatggagg cggtgtcggt cgacgatatc gtcgcggcgc
      541 tgcatcgcgc gctggcggac ggggagcgcg ggctgggcgg gctcgggctg caggtgtccg
      601 agggggcgct gcgcgaagtc gcgggcgctg ccgatggcga tgtgcgccgc gcgctgacgc
      661 tgctggaaat cgccgcggag ctcgcggggg gcgagggcgg cgccatctcc gaagcgaccc
      721 tcgcccaggt gctcgccgac cgcacccgcc gcttcgacaa gggcggcgag cagttctacg
      781 accagatctc cgcgctgcac aagtcgatgc gcagctccaa tccggacgcc gcgctgtact
      841 ggctcgcccg catgctcgac ggcggcgtcg acccggccta cctggcgcgc cgcctgaccc
      901 gcatggcggt cgaggacgtc ggcctcgccg acccgcgcgc gctgtcgatg gcgatcgagg
      961 cgtgggacgc ttacgaccgc ctcggcagcc ccgagggcga gctcgcgctg gcgcagctgg
     1021 tgctctacct cgccagcacc gccaagtcga acgcggccta catggcgttc aacgcggcga
     1081 aggccgacgt gcgcgcgcat ggcacgctgg aggtgccgct gcacatccgc aacgcgccga
     1141 cgaagctcat gaagcaactc ggctacggca agggctacca gtacgaccac gacgccgagg
     1201 gcgggatcgc actcgaccag accggcttcc ccgatgcgct gggcgaacgg atctactacg
     1261 agccggtcgc gcgcggcatg gagctgaagc tgaaggagaa gctcgatgcc ctgcgcgcgg
     1321 cacgggccag ggcgcgggca ggcaaggctg gcgaccgcga cgacgggatg tgatcatcac
     1381 cgcatgaact ggggcggctt gctggcggtc ggcgggggcg cagcgctcgg cgcgtgggcg
     1441 cgctgggcgc tcggcctgtg gctcaacgca ctgctgccgc agctgccgat gggcaccctc
     1501 gccgccaacc tcgccggcgg ctacctcgtc ggcctggcgc tggcctggtt cgcgctggcc
     1561 gagggcgtgc cgccggaact gcggttgctg gtggtgaccg gcttcctcgg cggactcacg
     1621 accttttcga ccttttccgc cgaagcggtc ggcctgctgg cgcgccagca ctacggctgg
     1681 gccgccgcgc acctcgcgct gcacctgggc ggctcgctcg ccgcgaccgc gctcggcttc
     1741 gccaccctgc gcctgttgag gagctgacga tggccgattg cgtctacctc aagttcttcg
     1801 tgctcgagca gcagcgccac gatggccagc cgctctacca gtggctgctg cgccacgccg
     1861 cgcggctcgg cctgccgggc ggctcggcct tccgggcgat cgcgggctac ggccgccatc
     1921 gcgtgctgca cgaggcgcac ttctacgaac tggcgggtga actgccgatg gaagtggtgt
     1981 tcgtctgcga acgcgccgag gccgatcgcc tggtggccga ggtcggcgcg gccggactgt
     2041 cgctgttcca ctaccgcatg cccgccgaga gcggggtcac tggcgagcgc tgacttcgcg
     2101 cgcggcgccg cgctgcgtcg cagccgctgc gattcccacc ggttatccac agcgttatct
     2161 gcaacggcaa cgcgggtggg gcgactacga tggacgcatt gccggccgac acgctgcccg
     2221 gcacgcaacc ggccggggga gccagatcgc cgatgagcgc acgccaggga ttgcggccgg
     2281 agccgcgctt cgatcatcgc gtcgagcaac tccgcgtccc gccgcaatcc gtggaggccg
     2341 agcaggccgt gctcgggggc ctgatgctgg cccccgacgc ctacgaccgc gtggcggacc
     2401 tgctggtcga cgccgacttc taccgccgcg accaccagct gatctaccgc gcgatccgcg
     2461 aactggcgga gaagaaccgc ccgtacgacg cggtgacgct cggcgagtgg ttcgagtcga
     2521 tgggccagtc cgagctcgtc gccggcggcg cgtacctgat cgaactcgcc agcaccacgc
     2581 cgtcggccgc gaacatcacc gcgtacgctg agatcgtgcg cgacaaggcg gtgctgcggc
     2641 agctgatcga agtaggcacc gtcatcgtca acgacggctt ccagcccgag gggcgggaga
     2701 cccgcgagat cctcgagcag gccgagaaga acgtgctcgc catcgccgag gccggcgcgc
     2761 gcggcaagac ggacttcacc gccgtcaacg acgccatgcg cgaggccttc gacgtcctgc
     2821 agacgcgcta ccagaacggc ggcggcgtca ccggcgtgcc caccggctac accgaattcg
     2881 acgagatgac ggccggcctg cagccgaccg acctgatcat tctcgcggcg cgtcccgcga
     2941 tgggcaagac gacgctcgcg ctcaacatgg ccgagtacgc ggcgatgaag accaagaagg
     3001 cggtcgcggt cttctcgatg gaaatgtcgg ccagccagct ggcgctgcgc ctgatctcgt
     3061 cggtgggccg cgtcaacgcg acgcgcctgc gcaccggcca gctcgaggac gaggactgga
     3121 gccgggtca
//
LOCUS       DATIQC010000393         7084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_520141, whole genome shotgun sequence.
ACCESSION   DATIQC010000393 DATIQC010000000
VERSION     DATIQC010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7084
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520141"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..893
                     /locus_tag="VLM17_08420"
     CDS             <1..893
                     /locus_tag="VLM17_08420"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HSR65606.1"
                     /translation="GPAYEDKVARRGIRVADLHYPEQLAEKLRSTMDYHNFVLTKYLG
                     VEAVDFQKTLDDALAFGEYVEPMKSDVAGILHDLRKHGKRVLFEGAQGSLLDIDHGTY
                     PYVTSSNTTVGGAYAGTGVGADAIDYVLGIAKAYATRVGGGPFPTELDDAVGQALRDK
                     GQEYGATTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKICIAYEYRG
                     KRTEYAPLDAAGWEECTPVYLEFPGWGESTHGITEWDKLPAAARAYLRALEELAGCPL
                     AIVSTGPDRDANIVLQDPFA"
     gene            1074..2492
                     /locus_tag="VLM17_08425"
     CDS             1074..2492
                     /locus_tag="VLM17_08425"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65607.1"
                     /translation="MWVERYLRELESPKRASRRNWRFAAGLAGAFLLLVGIAGYGMLQ
                     ERRAAAERAFVRHSLAVQEAVLELDLSSARMEVHHRGFLIKGDEDARALRERAFADGA
                     RASKELLRLVATDPLQSASARRAIAAFEARHARMLDTARIADAQGLDAGRAAMPLRGE
                     GSADAVVASLAGMRARQAMLLSASTARADRQAAHFRALLSYGTALALAVVLAVSALML
                     RQLSRNVRLGAQLLQMHHREEDRARELERSNRELEAFSYTISHDLRAPLRHIDGYVRM
                     LTEDAGEQLEGDARRYLDTISDSARRMGALIDDLLAYSRLGRKPVECTTLDMNALTDR
                     VLEEAGAGRSPATVTVEALPPAWADPVLLRQAWVNLLSNALKYSAPKGSAARIEVSGE
                     RDGRTIRYRVRDNGVGFDMRYADKLFGVFQRMHAQDEFEGTGVGLAIVHQVVQRHGGR
                     VSAQASPGEGACFTIELPAGAA"
     gene            2489..2926
                     /locus_tag="VLM17_08430"
     CDS             2489..2926
                     /locus_tag="VLM17_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR65608.1"
                     /translation="MSYEPIEILLVEDSRADAEMTLRTLKKRGIANHIEWVRNGVEAL
                     DYLFRRGAYENRAGGHPRLVLLDLKMPMMDGLQVLERMKSDPGTATIPVVMMTSSREE
                     GDLLASYRLGVNSYVVKPVDFDAFAEMVAEVGMYWMISNQTVE"
     gene            2932..5523
                     /locus_tag="VLM17_08435"
     CDS             2932..5523
                     /locus_tag="VLM17_08435"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR65609.1"
                     /translation="MRQGDAAPLKVLMVEDSAADAELLLRELRRLARPIEHRRVHSEA
                     MLHEALDTFGPDIVLSDYSMPGFGGHDALEIVIRRSPDTPFLYVSGTIGEERAIEALQ
                     RGAWDYVLKENLRRLPASIDRALRMAAERAERAAIQRALRESEERFRGIVESSQDWIW
                     EADAALHVTYSNPAVADVLGFTPDELHGRGVYELIDPADHVEVARRVPALGREPEGWR
                     RWRLRWRHRDGHRRVLESTGRPLLVDDQLRGFRGICHDITERLQQEAHIRRLARIHAV
                     LSAVGNMALRAADRDELLLAACRIAVEQGGFSAAGIGVREGDNLRVVRTYGNAALLAV
                     AAPDEPMPLTGGAYEQHPSLHAFNQSRVVAVPDFADREVDVPPALRTTMLERGVRSQI
                     SLPLGSPPWGLLALYSDVVRVYDNEEVDLLRRLADELDYAVDFLARGERLQYLAYHNP
                     ATGLPNRAAFQQRVRTLLGRGPVAVVALDAQGFARISHSRGRDFGNALLASIGGYLQQ
                     ERLEGCVAHPEADLFLLAWPSRETPEAERQWLEERLATLARRAFVVEGEQVHVLLRAG
                     MAMGPDHGPDADTLERAAFAALADARDQGAPVRAYSEELRDRAVRRMALERDLRQAIA
                     EEQFSLHFQPKFDAHTGALAGAEALLRWQHPREGWISPAEFIPLLEDSGLLVAVGRWV
                     MREAIATAEIWRKRDPTLRLAVNVSARELRHAGFLDACRELLAPYAGRAPIDIEITES
                     VIVDDVESSVQLLQALRGFGCGVAIDDFGTGYSSLNYLVRLPVDTLKIDRSFVAMLED
                     SPDTVTLVSNTIGLAHALGLAVVAEGVETEAQAQLLRALGCELLQGYLLGRPLPADAF
                     ASRFLAE"
     gene            complement(5583..6095)
                     /locus_tag="VLM17_08440"
     CDS             complement(5583..6095)
                     /locus_tag="VLM17_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HSR65610.1"
                     /translation="MRPLLPLASLLLGLALAPAAFAQPPLHGPASHPAMSPVARAPLL
                     VVHKSPTCGCCSGWVEHMRKAGFRVEVHDETDLDAVKRRAGVPAAKGSCHTAEIAGYF
                     IEGHVPAADVKRLLAERPRAKGLTAPGMPMGSPGMEMPDGRTPPYAVELVRGDGSTTV
                     FARHGGTGGQ"
     gene            6204..6746
                     /locus_tag="VLM17_08445"
     CDS             6204..6746
                     /locus_tag="VLM17_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HSR65611.1"
                     /translation="MRRPLATAALTLLLAACASTPMVQTDHDPAVQFAQYHTYSWREK
                     PQDGPALLMQRIVDDIDAQLAAKGWQQVPEGGDVAIAAHVATHERHRVDTFYDAPMWG
                     GWGWHGPWGWDTGFAHSSTTTYTVGTLVVDMFDAKTRRAIWSGVAEGTVPSSPQQVNQ
                     KLDQAVAKMFAGFPPGTAMR"
     gene            complement(6836..>7084)
                     /locus_tag="VLM17_08450"
     CDS             complement(6836..>7084)
                     /locus_tag="VLM17_08450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65612.1"
                     /translation="ALAGALGSGAAQARGQGHAQGGGALAGAIGDGATHEPAPKGKAD
                     AHARGHADADARASHGSGVSVRGSAGADARADASASND"
BASE COUNT         1068 a         2501 c         2503 g         1012 t
ORIGIN      
        1 tcggcccggc ctacgaagac aaggtggccc gccgcggcat ccgcgtggcc gacctgcatt
       61 accccgagca gctggccgag aagctgcgct cgacgatgga ctaccacaac ttcgtgttga
      121 ccaagtacct gggtgtggaa gccgtcgatt tccagaagac gctggacgac gcactcgcct
      181 tcggcgaata cgtcgaaccg atgaagtccg acgtcgccgg catccttcac gacctgcgca
      241 agcacggcaa gcgcgtgctg ttcgaaggcg cgcagggttc gctgctcgac atcgaccacg
      301 gcacctatcc gtacgtcacc tcgtcgaaca ccacggtggg cggcgcgtat gccggcaccg
      361 gcgtcggcgc cgatgcgatc gactacgtgc tcggcatcgc caaggcctac gccacgcgcg
      421 tgggcggcgg cccgttcccg accgagctcg acgacgcggt cggccaggcg ctgcgcgaca
      481 agggccagga atacggcgcc accaccggcc gcccgcgccg ctgcggctgg atggacatcg
      541 tcgcgctcaa gcgcgcggtc gccatcaacg gcatcagcgg cctgtgcatc accaagctcg
      601 acgtgctcga cggcatggag aagctgaaga tctgcatcgc gtacgaatac cgcggcaagc
      661 gcaccgagta cgccccgctc gacgccgccg gatgggagga gtgcacgcct gtgtacctcg
      721 agttcccggg ctggggcgag agcacccacg gcatcaccga gtgggacaag ctgccggccg
      781 ccgcccgtgc ctacctgcgc gcgctggagg aactcgccgg ctgcccgctg gcgatcgtca
      841 gcacgggtcc cgaccgcgac gcgaacatcg tcctgcagga tccgttcgcc tgagggattt
      901 cccgccccct gggatgaggg aaaggcccgc ttgcgcgggc ctttctgttt ccggttgcat
      961 gtcgcagtga acgtcggcac gaacccggtg tgccagcggt cacgccgtcg cggcgatgtg
     1021 aagacacgag gtttgagtcg tcacaccgca tgcggtatct agcactcacg ggggtgtggg
     1081 tggaacgata tctaagggaa ctggaatcgc cgaagcgcgc cagtcgccgc aactggcgct
     1141 tcgcggcggg actcgccggc gcattcctgc tgctggtcgg gatcgcgggt tacggcatgc
     1201 tgcaggagcg gcgtgccgcg gccgagcgcg ccttcgtgcg ccatagcctc gccgtccagg
     1261 aggcggtgct ggagctggac ctgtccagcg cgcggatgga ggtccaccac cgcgggttcc
     1321 tgatcaaggg cgacgaggac gcccgcgccc tgcgcgaacg cgcattcgcg gatggggccc
     1381 gcgcctcgaa ggaactgttg cgcctggtgg ccacggatcc cctgcagtcc gccagtgccc
     1441 gacgcgcgat cgccgcgttc gaagcgcgcc acgcacgcat gctcgacact gcccgcatcg
     1501 ccgatgcgca ggggctcgac gccgggcgtg ccgccatgcc gctgcgcggc gaaggctcgg
     1561 cggacgccgt ggtcgccagc ctcgccggga tgcgcgcgcg acaggcgatg ctgctgtccg
     1621 caagcacggc gcgcgccgac cggcaggcgg cgcatttccg ggcactgctg tcctacggca
     1681 cggccctggc gctcgccgtc gtcctggccg tgtcggcgct catgctgcgg cagctctcgc
     1741 gcaatgtacg gctcggtgcg cagctgctgc agatgcacca tcgcgaggag gaccgcgccc
     1801 gcgagctgga gcgcagcaac cgcgagctcg aagccttcag ctacaccatc tcgcacgacc
     1861 tgcgcgcgcc gctgcgccat atcgacggtt acgtgcgcat gctgaccgag gatgccggcg
     1921 agcagctcga gggcgacgcg cggcggtacc tcgacaccat cagcgacagt gcccgccgca
     1981 tgggtgcgct gatcgacgac ctcctcgcgt actcccgcct ggggcgcaag ccggtcgagt
     2041 gcacgaccct ggacatgaac gcgctgaccg atcgcgtgct cgaggaggcg ggcgcgggcc
     2101 gttcgccggc gacggtcacg gtggaggcgt tgccgcccgc gtgggccgac ccggtgctgc
     2161 tgcggcaggc gtgggtcaac ctgctctcca atgcgctcaa gtacagcgcg ccgaagggca
     2221 gcgcggcgcg catcgaggtc agcggcgagc gcgacggcag gaccatccgc taccgggtcc
     2281 gggacaacgg cgtcggtttc gacatgcgct atgccgacaa gctgttcggc gtgttccagc
     2341 gcatgcacgc acaggacgaa ttcgagggca cgggcgtggg cctggccatc gtccaccagg
     2401 tcgtccagcg ccacggcggg cgggtgtccg cccaggcttc gcccggagag ggcgcctgct
     2461 tcaccatcga actgccagcg ggggccgcat gagctacgaa cccatcgaga tcctgctggt
     2521 cgaggattcg cgtgccgatg cggaaatgac gctgcgcacg ctgaagaagc gcggcatcgc
     2581 caaccacatc gaatgggtgc gcaacggcgt cgaggcgctg gactacctgt tccggcgcgg
     2641 tgcctacgag aaccgcgcgg gcggccatcc gcggctggtg ctgctcgacc tcaagatgcc
     2701 gatgatggac ggcctgcagg tgctggaacg gatgaagtcc gacccgggca ccgcgaccat
     2761 cccggtggtg atgatgactt cctcgcgcga ggagggtgac ctgctcgcca gctaccgcct
     2821 cggcgtcaac agctacgtcg tcaagccggt ggacttcgac gcgttcgccg aaatggtggc
     2881 ggaggtcggc atgtactgga tgatctccaa ccagacggtg gagtgaagag catgcgccag
     2941 ggggacgccg cgccgctgaa ggtgctcatg gtcgaggact cggccgccga cgcggagctg
     3001 ctgctgcgcg agctgcgccg cctggcacga ccgatcgaac accgccgcgt gcactcggaa
     3061 gcgatgctgc acgaagcgct ggacaccttc gggcccgaca tcgtcctgag cgactactcg
     3121 atgccgggct tcggcgggca cgacgcgctc gagatcgtga tccgacgctc gccggataca
     3181 cccttcctct acgtctccgg cacgatcggc gaggaacgcg cgatcgaggc gctgcagcgc
     3241 ggcgcatggg attacgtcct gaaggaaaac ctgcgccgcc ttcccgcgtc gatcgaccgt
     3301 gcgctgcgca tggccgcgga acgcgccgaa cgcgcggcga tccagcgtgc gctgcgcgag
     3361 agcgaggaac ggttccgcgg catcgtggag agcagccagg actggatctg ggaagcggat
     3421 gccgcgcttc acgtcaccta cagcaatccg gcggtcgcgg atgtcctggg tttcactccg
     3481 gacgagctgc acggtcgcgg ggtctacgag ctgatcgatc ccgcggacca tgtcgaagtg
     3541 gcccggcgcg tgcccgcgct ggggcgcgaa ccggaggggt ggcgccgctg gcgcctgcgt
     3601 tggcggcatc gcgatggcca ccgccgcgtg ctcgaaagca ccgggcgccc gctgctcgtg
     3661 gacgaccagc tgcgcgggtt ccgcggcatc tgccacgaca tcaccgagcg cctgcaacag
     3721 gaagcgcaca tccgccggct cgcgcgcatc cacgccgtgc tcagcgcggt gggcaacatg
     3781 gcgttgcgcg ccgccgaccg cgacgagctg ctgcttgccg cctgccgcat cgcggtggag
     3841 cagggcgggt tcagcgccgc cggcatcggc gtgcgcgaag gcgacaacct gcgcgtcgtc
     3901 cgcacgtacg gcaacgccgc gctccttgcg gtggccgcgc cggacgagcc gatgccgctc
     3961 accggcgggg cgtacgaaca gcatccgagc ctgcacgcat tcaaccagtc gcgcgtggtc
     4021 gcggtgcccg actttgccga tcgcgaggtg gacgtgccgc ccgcgctgcg aacgacgatg
     4081 ctcgagcgcg gcgtgcgctc gcagatctcg ttgccgctcg gcagcccgcc ctggggcctc
     4141 cttgcgctgt attccgatgt cgtgcgcgtg tacgacaacg aagaagtcga cctgctgcgc
     4201 cggctggcgg acgaactcga ctacgccgtc gacttcctcg cgcgcggcga gcggctgcaa
     4261 tacctcgcct atcacaatcc cgcgaccggg cttcccaatc gggctgcctt ccagcaacgg
     4321 gtccgcacgc tgctgggacg tggccccgtg gcggtggtcg cgctcgatgc gcagggcttc
     4381 gcccgcatca gccattcgcg cgggcgcgac ttcggcaatg cactgctggc atccatcggt
     4441 ggctacctgc agcaggagcg gctggaagga tgcgtcgccc atccggaagc cgacctgttc
     4501 ctgctcgcct ggccatcgag ggaaacgccg gaggccgagc gccaatggct ggaagagcgc
     4561 ctggcgacgc tggcgcgacg cgccttcgtg gtcgagggcg agcaggtcca cgtgctgttg
     4621 cgcgccggca tggccatggg ccccgaccac ggacccgatg ccgatacgct cgaacgcgcg
     4681 gcgttcgcgg ccctcgcgga cgcgcgcgac cagggcgcgc cggtccgggc ctacagcgaa
     4741 gagctgcgtg accgtgccgt gcgccgcatg gcgctggaac gggacctgcg gcaggcgatc
     4801 gccgaggaac aattcagcct gcatttccag ccgaagttcg acgcacacac gggcgcattg
     4861 gcgggtgccg aagcgttgct gcgctggcag catccccgcg aaggctggat ctcgcccgcg
     4921 gaattcattc cgctgctcga ggattccggc ctgctggtcg cggtcgggcg ctgggtgatg
     4981 cgcgaggcga tcgcgaccgc ggagatctgg cgcaagcgcg atcccactct gcgactggcg
     5041 gtgaacgtgt ctgcgcggga actccgtcat gccggtttcc tcgatgcatg ccgggagctg
     5101 ctggcgccct acgccggccg ggcgccgatc gacatcgaga tcaccgaaag cgtgatcgtc
     5161 gacgacgtcg aaagcagcgt gcagctgctg caggcgctgc gcgggttcgg ctgcggcgtc
     5221 gccatcgacg acttcggcac cggctactcg tcgctcaact atctcgtccg cttgccggtc
     5281 gacacgctca agatcgaccg cagcttcgtc gccatgctgg aagacagccc ggacaccgtg
     5341 acgctggtga gcaacacgat cggcctggcc cacgcgctcg gcctggccgt ggtcgccgag
     5401 ggcgtggaga ccgaagcgca ggcgcagctg ttgcgcgcgc tcggctgcga gctgctgcag
     5461 gggtacctgc tgggacgacc gctgcccgcg gacgcgttcg cgtcgcggtt cctggcggag
     5521 tgaggtccgg gcgccgcctt gcgcggcacg gcccgcgaac gagccggtgc ggagacggcc
     5581 ggctactggc cgccggtgcc gccatgcctg gcgaagacgg tcgtgctgcc gtcgccccgg
     5641 accagctcca ccgcgtaggg cggcgtgcgc ccgtcgggca tctccatccc cggcgaaccc
     5701 atcggcatgc cgggcgcggt gagccccttc gcccggggcc tctccgccag cagtcgcttc
     5761 acgtccgcgg cgggcacgtg gccctcgatg aaatagccgg cgatttccgc cgtgtggcag
     5821 gagcccttgg cggccggcac gccggcgcga cgcttcaccg catcgaggtc ggtttcgtca
     5881 tgcacctcga cgcggaagcc cgccttgcgc atgtgctcga cccagccgct gcagcaaccg
     5941 caggtcggcg acttgtgcac gaccagcagc ggcgcgcgcg cgaccggcga catcgcgggg
     6001 tggctggccg gcccgtggag tggcggctgg gcgaaggcgg cgggcgcgag ggccaggccg
     6061 agcagcagcg aggcgagggg caggagcggg cgcattgcgc atccgagggt gggtctggcg
     6121 cgattctgcc accgcgcccg gttcaccgcc ccaccaccgc gcccgagcga ccgtagcgcc
     6181 gaacccgtcc gccggaggcc gccatgcgcc gcccactcgc caccgccgcg ctcaccctgc
     6241 tgctggccgc ctgcgccagc accccgatgg tgcagaccga ccacgatccc gccgtgcagt
     6301 tcgcccagta ccacacctac agctggcggg agaaaccaca ggacggcccc gcgctgctga
     6361 tgcagcgcat cgtcgacgac atcgatgcgc agctcgccgc caagggctgg cagcaggtgc
     6421 ccgaaggtgg cgacgtcgcc atcgccgcgc acgtcgccac ccacgagcgc caccgcgtcg
     6481 acaccttcta cgacgcgccg atgtggggcg gctggggctg gcacgggccg tggggctggg
     6541 ataccgggtt cgcccacagc agcaccacca cctacaccgt cggcacgctg gtggtcgaca
     6601 tgttcgacgc gaagacccgg cgcgcgatct ggagcggcgt cgcggagggc accgtgccga
     6661 gttcgccgca gcaggtgaac cagaagctcg accaggcggt ggcgaagatg ttcgccggat
     6721 tcccgccggg caccgcgatg cgctgattcg ccccgccccg cgacggggct accggcgccg
     6781 catgcggaaa cgcctccttg cggaggcgtt tccttgccgt gcaacggggc gcgagtcagt
     6841 cgttcgatgc gctcgcgtcc gcccgtgcgt ccgcaccggc actgccgcgg accgagacgc
     6901 cggaaccgtg cgatgcccgc gcgtcggcat cggcgtggcc acgcgcatgc gcgtcggcct
     6961 tccccttcgg cgccggctcg tgcgtggcgc cgtcgccgat cgcccctgcc agcgcgccgc
     7021 cgccctgggc atggccctgg ccgcgtgcct gcgccgcgcc ggaaccgagc gcgccggcca
     7081 gggc
//
LOCUS       DATIQC010000394         3052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_203052, whole genome shotgun sequence.
ACCESSION   DATIQC010000394 DATIQC010000000
VERSION     DATIQC010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3052
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203052"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..1152
                     /locus_tag="VLM17_08455"
                     /pseudo
     CDS             1..1152
                     /locus_tag="VLM17_08455"
                     /inference="COORDINATES: protein motif:HMM:NF013225.4"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
     gene            1176..>3052
                     /locus_tag="VLM17_08460"
     CDS             1176..>3052
                     /locus_tag="VLM17_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HSR65613.1"
                     /translation="MFKKILIANRGEIACRVIRTCRRLGIRTVAVYSDADADAQHVRQ
                     ADEAWRIGGPRPQESYLRGDAILEVARQSGAQAIHPGYGFLSENADFADAVEAAGLAF
                     IGPKAASMRRMGSKAGAKELMQAAGVPVVPGYTGEDQSPALLQREADRIGYPLMIKAA
                     HGGGGKGMRVVRASGEFPAALESCQREAANAFGRDRVLLERYVESPRHIELQVFGDAH
                     GNTIHLGERECSAQRRYQKVLEESPSPFVTPELRAAMGAAAVLAARAIDYVNAGTVEF
                     IVAPDGSFFFMEINTRLQVEHPVTELVTGLDLVEWQLRVAAGEALPLAQDALAQRGHA
                     IEVRLYAEDPDAGFLPGSGTLERLQLPQPSPQVRIDSGVVEGDMVTIFYDPMIAKLVV
                     RDADRPTALARLRDALAQCEIEGPKSNIGFLERLVRHPAITGGTIDTGYLDRHLDEFL
                     PAPRLDADLLLAAATARLLGQEADARARAAGSGDPTSPWAIADGWRLGHGGKRELAFL
                     HRGERIDFLAHGSAGDYRIEHAGGTSVVAGARLSGERLSLRIDARGRRFRVLSDEQRV
                     LVHDGERRLALAPIAAYRSEAGTHGAGDDRLKAPMPGRVVLVRAQAGDSVAAGQELAV
                     L"
BASE COUNT          497 a         1094 c         1050 g          411 t
ORIGIN      
        1 tcgggcggcg cgcgcatcca ggaaggcgtg gcctcgctgg gcggctatgc cgacgtgttc
       61 cagcgcaacg tgatggccag cggcgtgatc ccgcagatca gcctgatcat ggggccgtgc
      121 gccggcggcg cggtgtactc cccggcgatg acggacttca tcttcatggt caaggacagc
      181 agctacatgt tcgtgaccgg acccgaggtg gtcaagaccg tgacgcacta agaggtcacg
      241 gccgaagaac tcggcggtgc catcacgcac acgaccaaga gcggcgtggc cgacatggcc
      301 ttcgacaacg atgtcgaggc gctgctgatg ctgcgccgct tcttcaacta cctgcccctg
      361 aacaaccgcg agaagccgcc ggcccggccc agcggcgacc cgatcgaccg gctcgagcgc
      421 agcctggaca ccctggtgcc cgacaacccg aacaagccct acgacatgaa ggagctgatc
      481 ctcaaggtcg tggacgacgg cgacttcttc gagctgcagc ccgactacgc ggccaacatc
      541 gtgatcggct ttgcgcgggt ggacggccag accgtgggca tcgtcgccaa ccagccgctg
      601 gtgttggccg gctgcctgga catcaagagc tcgatcaagg cggcgcgttt cgtgcgcttc
      661 tgcgactgct tcaacatccc ggtggtcacc ttcgtggacg tgcccggctt catgcccggc
      721 accagccagg aatacggcgg catcatcaag cacggcgcca agctgctgtt cgcctatgcc
      781 gagtgcaccg tgcccaaggt caccgtgatc acgcgcaagg cctacggcgg cgcctacgac
      841 gtgatgagct ccaagcacct gcgcggcgac gtcaacttcg cctggcccaa cgccgagatc
      901 gcggtgatgg gcgccaaggg cgcggtggag atcatcttcc gcgaggacaa gggcgacccg
      961 gccaagctgg ccgcgaagga ggccgagtac aaggcccgct tcgccaaccc cttcgtggcc
     1021 ggcgcgcgcg gcttcatcga cgacgtgatc cagccgcacg agacgcgcaa gcgcatctgc
     1081 cgcagcctgg cgatgctgaa ggacaagaag gtggcgaacc cctggcgcaa gcacgggaac
     1141 atcccgctct gaccgcgaca gaggagagac cgaacatgtt caagaaaatc ctcatcgcca
     1201 accgcggcga aatcgcctgc cgcgtcatcc gcacctgccg ccggctgggc atccgcacgg
     1261 tggcggtgta ttccgacgcc gatgccgatg cgcagcacgt gcgccaggcc gacgaggcct
     1321 ggcgcatcgg cggcccgcgc ccacaggaat cctacctgcg cggcgacgcg atcctcgagg
     1381 tcgcgcggca gagcggtgcg caggccatcc acccgggcta cggtttcctc agcgagaacg
     1441 ccgacttcgc cgacgcggtg gaagccgcgg gcctcgcctt catcggcccg aaggcggcgt
     1501 cgatgcgcag gatgggcagc aaggccggcg cgaaggagct gatgcaggcc gccggcgtgc
     1561 cggtggtgcc gggctatacc ggcgaggacc agtcgcccgc gctgctgcag cgcgaggccg
     1621 accgcatcgg ctacccgctg atgatcaagg ccgcgcatgg cggcggcggc aagggcatgc
     1681 gcgtcgtgcg cgcctccggc gaattcccgg cggcgctgga aagctgccag cgggaggccg
     1741 ccaacgcctt cggccgcgac cgggtgctgc tcgagcgcta cgtggaatcg ccgcgccaca
     1801 tcgaactgca ggtcttcggc gacgcgcacg gcaatacgat ccacctcggc gagcgcgaat
     1861 gctcggcgca gcgccgctac cagaaggtgc tggaggaatc gccctcgccc ttcgtcaccc
     1921 cggagctgcg cgcggcgatg ggcgcggcgg cggtgctggc ggcgcgcgcg atcgactacg
     1981 tcaacgccgg caccgtcgag ttcatcgtcg cgccggacgg cagcttcttc ttcatggaga
     2041 tcaacacccg gctgcaggtc gagcaccccg tcaccgagct ggtcaccggg ctcgacctcg
     2101 tcgaatggca gctgcgcgtc gccgcgggcg aagcccttcc actcgcgcag gacgccctcg
     2161 cgcagcgcgg gcacgcgatc gaggtgcggc tgtacgccga ggatccggac gccggcttcc
     2221 tgccggggtc cggcacgctg gagcggctgc agctgccgca gccgtcgccg caggtacgca
     2281 tcgattccgg cgtggtcgaa ggcgacatgg tcacgatctt ctacgacccg atgatcgcca
     2341 agctggtcgt gcgggacgcg gaccgcccga ccgccctcgc ccgcctgcgc gacgcgctcg
     2401 cgcaatgcga gatcgaaggc ccgaagtcga acatcggctt cctcgagcgg ctggtgcggc
     2461 acccggcgat caccggcggc accatcgaca ccggttacct cgaccgccac ctcgacgaat
     2521 tcctgcccgc accgcggctc gacgccgacc tgctgctcgc cgccgccacc gcgcggctgc
     2581 tcgggcagga agcggacgcg cgcgcacggg ccgcgggttc gggcgacccg acctcgccct
     2641 gggccatcgc cgacggctgg cggctgggcc acggcggcaa gcgcgaactc gccttcctgc
     2701 accgtggcga gcgcatcgac ttcctggcgc acggcagcgc cggcgactac cgcatcgagc
     2761 acgcaggcgg cacgtccgtc gttgccggcg cacggctgtc gggcgagcgg ctgagcctgc
     2821 gcatcgacgc gcgcggccgc cgtttccgcg tgctctccga cgagcagcgc gtgctggtgc
     2881 acgacggcga acgccgcctc gcgctcgcgc cgatcgccgc ctatcgcagc gaagccggta
     2941 cgcacggcgc gggcgacgac cgcctgaagg cgccgatgcc cggccgcgtc gtgctggtgc
     3001 gcgcgcaggc gggcgacagc gtcgccgccg gccaggaact ggcggtgctc ga
//
LOCUS       DATIQC010000395         8697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_449750, whole genome shotgun sequence.
ACCESSION   DATIQC010000395 DATIQC010000000
VERSION     DATIQC010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8697
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449750"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VLM17_08465"
     CDS             <1..255
                     /locus_tag="VLM17_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65614.1"
                     /translation="LQVAALAGLPKTVVRQARARLAELEQQGRDAPSTPMTAQALDAP
                     QQFGLFASSSAVLEALATLEPDELTPRQALEALYRLKTLA"
     gene            326..976
                     /locus_tag="VLM17_08470"
     CDS             326..976
                     /locus_tag="VLM17_08470"
                     /inference="COORDINATES: protein motif:HMM:NF017853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HSR65615.1"
                     /translation="MATLSSDLATRLEGAPAQQIAERLGITQAQAGNAIATALPLLLG
                     TLGHNASQPQGADTLFGALQEHRGAELGNVLDAALAGHGQGGAILGHVFGDRQAHADQ
                     ALGQATGLGQDKAHLLLRWLAPLAMAWVARRLFDARHADAATDQAPTAQAGTATTPAA
                     PSPQVLGDVLQRETAHAQQQHGGLLDAVLGGLGANAGELGGLLKKGEAIFGNRPTP"
     gene            complement(993..2423)
                     /locus_tag="VLM17_08475"
     CDS             complement(993..2423)
                     /locus_tag="VLM17_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR65616.1"
                     /translation="MRHKRLLPLIVACALFIENMDSTVISTSLPAIAHDLGTDAIALK
                     LALTTYLLSLAVFIPVSGWVADRFGARPTFITAIGVFLLGSIACAASGSLAALVAARF
                     LQGIGGAMMVPVGRLVLLRTIPKHELVHALSWLTIPALVGPVVGPPLGGFITTYFDWR
                     WIFLINLPIGVLGIALASRFIPDIREDTPPLDWTGFLLAGLGLATAMFGFSTLGRHLV
                     PVWAAALTLGGGVLALLAYGWHARRVADPLLDLGLFRLPSYRAGVLGGSLFRIGIGAT
                     PFLLPLMLQLGFGLSPVRSGMLTFASAIGAMFMKTIAGAVLRRFGFRRVLVANGVIAA
                     ALLAGFGLFRPDTPHALVICVLLASGCFRSLQFTSLNAISYADVEQRLMGQASSLAGM
                     MQQLSLSLGVAVAGYLLQLAGVMRGQPATDVHNFYLAFFAVGAIAASSALVMARLPRH
                     AGAAMAGHAHAGEEVAEPKVAQRPAT"
     gene            complement(2433..2819)
                     /locus_tag="VLM17_08480"
     CDS             complement(2433..2819)
                     /locus_tag="VLM17_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HSR65617.1"
                     /translation="MDSVRLDVWLWAARFFKTRSLARQAVETGKVEVGGQRAKVARAV
                     RVGDAMRVVRGEETFEIEVRGLSDVRGPAPAAQALYAESEESRGRREAARAARAAERA
                     GYRPPEGKSDKRARRLIRALGDIDAL"
     gene            complement(2843..3604)
                     /locus_tag="VLM17_08485"
     CDS             complement(2843..3604)
                     /locus_tag="VLM17_08485"
                     /inference="COORDINATES: protein motif:HMM:NF014037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mut7-C RNAse domain-containing protein"
                     /protein_id="HSR65618.1"
                     /translation="MPAQRQCEFRFYEELNGFLAPALRRRSFAHAFDDTPAVKDRIES
                     LGVPHTEVDLILVDGEPASFSRRLRGGERVAVYPMFECFDVSGLGGLRPRPLREPRFV
                     LDVHLGRLAHYLRLLGFDCLYRNDYRDEDLLAIAREDHRTVLSRDTGLLKRAELTHGA
                     FVHASDPRRQLREVIDRFQLESRIAPFTRCARCNGEVAHVPAEEAEEAPAAVARDGTE
                     FSRCRGCGQLYWRGSHPARLRERLAEVGVDLGAGQ"
     gene            complement(3779..4180)
                     /gene="rplS"
                     /locus_tag="VLM17_08490"
     CDS             complement(3779..4180)
                     /gene="rplS"
                     /locus_tag="VLM17_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HSR65619.1"
                     /translation="MNKPSLNTLVQEFEAAQAQRALPAFGPGDTVVVNVKVKEGNRER
                     VQAYEGVVIAKKNAGLNSSFTVRKISHGYGVERVFQSHSAIIDSVQVKRRGAVRAGKL
                     YYLRGLEGKKARIKEDLAAHAKAKAEANANA"
     gene            complement(4309..5067)
                     /gene="trmD"
                     /locus_tag="VLM17_08495"
     CDS             complement(4309..5067)
                     /gene="trmD"
                     /locus_tag="VLM17_08495"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HSR65620.1"
                     /translation="MRIDVVSLFPEFVAQCAGFGVVGRAQERGLLALHGWNPRDYAEG
                     NYRRVDDRPFGGGPGMVMLIDPLRACLAAARAADPAPARVVYLSPQGTRLTQAKVREL
                     AGRERLVLLCGRYEGIDERLVQAEVDEELSIGDYVLSGGELAAAVVVDAVARLQEGAL
                     NDAESAAQDSFEEGLLDCPHYTRPVEHALGRVPDVLLSGNHADIARWRRMQALGRTFR
                     RRPDLLDGATLAPADRRLLDEFLAGQGGEPDPDA"
     gene            complement(5074..5601)
                     /gene="rimM"
                     /locus_tag="VLM17_08500"
     CDS             complement(5074..5601)
                     /gene="rimM"
                     /locus_tag="VLM17_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534678.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HSR65621.1"
                     /translation="MTDAPRSAQQRHVLLGRVRGAFGVRGELKLESFTEPADAIFRYQ
                     PWTLRPAQGGARDVSGARGRITPKGVVARFPGIEDRDAAEALLGSEVWVERSVLPPPQ
                     PGEYYWIDLEGLRVSNLEGIDFGTVSHLFSTGVNDVMVVQGERERMIPFLEPDYVRSV
                     DFDKGVVTVDWDADF"
     gene            complement(5634..5882)
                     /gene="rpsP"
                     /locus_tag="VLM17_08505"
     CDS             complement(5634..5882)
                     /gene="rpsP"
                     /locus_tag="VLM17_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014403536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HSR65622.1"
                     /translation="MVKIRLTRGGAKKRPFYHIIVTDSRSARDGRNIERVGFYNPVAS
                     GNEKRVELDAGRMQYWIGQGAQMTDKVANLYKQAGKAA"
     gene            6188..7135
                     /locus_tag="VLM17_08510"
     CDS             6188..7135
                     /locus_tag="VLM17_08510"
                     /inference="COORDINATES: protein motif:HMM:NF016552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65623.1"
                     /translation="MNHSRLQSAIVLSGCVGLALASMAGFAATTRDTPRKNVNSNASY
                     KPTGKGYGQIDLLEPAKPTGNGKPSGSNGINYHGGPLILGTTNVYYIWYGNWSGNTAT
                     NILTDLAQNMGGSPYFNINTTYYNGSNVRVSNAVSYKGATNDSYSQGTALSDAGVQAV
                     VSSAISSGRLPKDTNAVYFVLTSADVNETSGFCTQYCGWHTHGTVLGSDIKYSFVGNP
                     DRCPSSCAAQTSGPNGNAGADGMASIISHELEEAVTDPDLNAWYDRRGQENADKCAWT
                     FGTTYTSGGAKANVHLGTRDYLIQQNWVNASGGYCSMSY"
     gene            7242..7700
                     /locus_tag="VLM17_08515"
     CDS             7242..7700
                     /locus_tag="VLM17_08515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65624.1"
                     /translation="MRMFPRTCCVLLWAFLACPATAQQVSPTRGVVVFSQLEGELATA
                     VGGGDQPGVDRLLSAEFEQRAATAPDQPQPRAEWLAERKGAAAWTPTRMAVHDYGDIA
                     VASFVAEGGAARSTVIDIWRRHGADWQLQLRFVAAAPAEAPQDARPDGKH"
     gene            complement(7791..>8697)
                     /locus_tag="VLM17_08520"
     CDS             complement(7791..>8697)
                     /locus_tag="VLM17_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010483267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HSR65625.1"
                     /translation="VDVLFHPSSGEQDPVEIAKHALDAAKKNFADVLIVDTAGRLHVD
                     AEMMAEIKHLHAALNPIETLFVVDSMTGQDAATTARHFSEALPLTGVVLTKTDGDARG
                     GAALSVRYITGKPVKFIGTGEKVDGLDVFHPDRIASRILDMGDVLSLVEQVEQQVDKD
                     KAAKLAEKVVKGKKFDLNDMRDQLEQMQNMGGLSGLMDKLPGIGQVPEHVKQQVTGRE
                     VPRMIAIINSMTKKERRNPALLNGSRRARIARGAGMQPADVNKLMKQYQQMEKMMSKL
                     SGGGMKGLMRGMKGMMGARGGMPFR"
BASE COUNT         1334 a         3120 c         3031 g         1212 t
ORIGIN      
        1 ctgcaggtgg cggcgctggc ggggttgccg aagacggtgg tgcggcaggc gcgtgcgcgc
       61 ctggctgaac tcgagcagca gggccgcgat gcgccgtcga cgccgatgac cgcgcaggcg
      121 ctggacgcgc cgcagcagtt cggcctgttc gcgtcttcct ccgccgtgct ggaggcgctg
      181 gcgacgctgg agccggacga actcacgccc aggcaggcgc tcgaggcgct gtaccggctg
      241 aagacgctgg cctgatgggt ggcgcgttgg catcgcgcta acggtccccg gaccagcatg
      301 ggcggcccgc ccggcgaaaa atcccatggc cacgctcagc agcgacctcg caacccggct
      361 cgaaggcgcg cccgcgcagc agatcgccga acgcctcggc atcacccagg cgcaggccgg
      421 caacgccatc gccacggcac tgccactgct gctgggcacg ctcgggcaca acgcgagcca
      481 gccgcagggc gcggacaccc tgttcggcgc gctgcaggag catcgtggcg ccgaactggg
      541 caacgtgctc gacgcggccc ttgccgggca cggccagggc ggagcgatcc tcgggcatgt
      601 gttcggcgac cgccaggcgc acgccgacca ggccctcggg caggccaccg gcctcggcca
      661 ggacaaggcg cacctgctgc tgcgctggct ggcgcccctg gcgatggcct gggtagccag
      721 gcgcctgttc gatgcgcgcc atgcggacgc cgccaccgac caggcgccga ccgcgcaggc
      781 cggtacggcg acgacgcccg ccgcgccttc gccgcaggtc ctgggcgacg tgctgcaacg
      841 ggaaaccgcg cacgcgcagc aacagcacgg ggggctgctc gacgcggtgc tcggcgggct
      901 cggcgcgaac gccggtgaac tgggcggact actgaagaag ggcgaggcga tcttcggcaa
      961 ccggccgacg ccctgaccat cccgtcagtc cctcacgtcg ccgggcgctg cgccaccttc
     1021 ggctccgcga cttcctcgcc cgcgtgggcg tgtcccgcca tcgccgcgcc cgcatggcgc
     1081 ggcaggcgtg ccatgaccag cgcggaactc gcggcgatcg cgccgaccgc gaagaacgcg
     1141 aggtagaagt tgtgcacgtc ggtcgccggc tgcccgcgca tcacgccggc cagctgcagc
     1201 aggtaaccgg cgaccgcgac gcccaggctc agcgagagtt gctgcatcat ccccgccagg
     1261 ctgctcgcct gccccatcag ccgctgttcg acgtcggcat agctgatcgc gttgaggctg
     1321 gtgaactgca gggagcggaa gcagccgctc gccagcagga cgcagatgac cagcgcgtgg
     1381 ggtgtgtccg gccggaacag cccgaagccg gcgagcagcg cggcggcgat cacgccgttg
     1441 gccaccagca cgcgccggaa gccgaagcgc ctgagcaccg cgcccgcgat cgtcttcatg
     1501 aacatcgcgc cgatcgccga tgcgaaggtg agcatgcccg agcgcaccgg gctcaggccg
     1561 aagccgagct gcagcatcag cggcagcagg aagggcgtcg cgccgatgcc gatgcggaac
     1621 aacgacccgc cgagcacgcc ggcgcgatag ctgggcaggc ggaacaggcc gaggtcgagc
     1681 agcgggtccg cgacccggcg cgcatgccag ccgtaggcga gcagcgcgag cacgccgccg
     1741 cccagcgtca gcgcggccgc ccacaccggc acgaggtggc gtcccagcgt cgagaacccg
     1801 aacatcgcgg tcgccaggcc caggcccgcc agcaggaagc cggtccagtc cagcggcggc
     1861 gtgtcctcgc ggatgtcggg aatgaagcgg ctggcgagcg cgatgccgag cacgccgatc
     1921 ggcaggttga tcaggaagat ccagcgccag tcgaagtagg tggtgatgaa cccgccgagc
     1981 ggcggcccca ccaccgggcc gaccagcgcg ggaatcgtca gccagctcag cgcgtgcacc
     2041 agctcgtgct tgggaatcgt gcgcagcagc accagccgcc ccaccggcac catcatcgcc
     2101 ccgccgatgc cctgcaggaa ccgggcggcg accagcgcgg cgagcgagcc gctggcggcg
     2161 caggcgatgg aaccgagcag gaacacgccg atcgcggtga tgaaggtcgg ccgcgcgccg
     2221 aagcggtcgg cgacccagcc gctgaccgga atgaacaccg ccagcgacag caggtaggtg
     2281 gtcagcgcga gcttgagcgc gatcgcgtcg gtgccgaggt cgtgggcgat cgccggcagc
     2341 gaggtcgaga tcacggtcga atccatgttc tcgatgaaca gcgcgcaggc gacgatcagc
     2401 ggcagcaggc gcttgtgcct cacgcgccgc cctcagagcg catcgatgtc gcccagcgcg
     2461 cggatcaggc gacgcgcacg cttgtcggac ttgccttccg gcgggcggta gccggcgcgc
     2521 tcggcggcgc gcgcggcgcg cgcggcctcg cggcgccccc gcgattcttc cgactccgcg
     2581 tacagcgcct gcgcggccgg tgccgggccg cggacgtcgc tcagcccgcg cacctcgatc
     2641 tcgaaggttt cctcgccgcg gacgacgcgc atggcatcgc ccacccgcac cgcgcgcgca
     2701 accttggctc gctgtccgcc gacctccacc ttgccggtct ccaccgcctg ccgggccagg
     2761 ctgcgggtct tgaagaagcg cgcggcccac agccagacat cgaggcggac gctgtccacg
     2821 ggcgcgcccc ccgggccggc gctcactgcc cggccccgag gtcgacgccg acttcggcca
     2881 ggcgttcgcg cagtcgcgcg gggtggctgc cgcgccagta cagctggccg cacccgcggc
     2941 aacggctgaa ttccgtcccg tcgcgcgcga cggcggccgg cgcttcttcg gcctcttccg
     3001 ccgggacgtg cgcgacctcg ccattgcagc gcgcgcaacg tgtgaacggt gcgatgcgcg
     3061 attcgagctg gaagcggtcg atcacctcgc gcagctgccg gcgcgggtcg gacgcatgca
     3121 cgaacgcgcc gtgggtgagc tccgcccgct tgagcaggcc ggtgtcgcgg ctgagcaccg
     3181 tgcgatggtc ctcgcgtgcg atcgcgagca ggtcctcgtc gcggtagtcg ttgcggtaca
     3241 ggcagtcgaa gccgagcagg cgcaggtagt gtgcgagccg gccgaggtgc acgtcgagca
     3301 cgaagcgcgg ctcgcgcagc gggcgtggac gcaggccgcc gagacccgag acatcgaagc
     3361 attcgaacat cggatacacg gccacgcgct cgccgccgcg caggcggcgg ctgaacgacg
     3421 cgggctcgcc atcgacgagg atcaggtcga cttccgtgtg cggcacgccg agcgattcga
     3481 tgcggtcctt gaccgcgggc gtgtcgtcga aggcatgcgc gaagctgcgg cggcgcagcg
     3541 cgggcgcgag gaacccgttg agttcctcgt agaaacggaa ttcgcactgg cgctgcgcag
     3601 gcaagccgat gtcctgtcga tcgaacaagc aggctacgcc tgcgggcgtg tgcggcggga
     3661 gatcgaccgt gcgaggccgc gaccgggagc atcccccgat gcccgatgcg ggcggctcac
     3721 tgttccaaac gcgaacggcc gcccggaggc ggccgttgca tctcgcggtg cgtcgcgatc
     3781 aggcgttggc gttcgcctcg gccttggcct tggcgtgggc ggcgaggtct tccttgatgc
     3841 gcgccttctt gccctcgagg ccgcgcaggt agtacagctt gccggcgcgc acggcgccgc
     3901 ggcgcttgac ctggaccgag tcgatgatcg cgctgtggct ctggaacacg cgctcgacgc
     3961 cgtagccgtg cgagatcttg cgcacggtga acgaggaatt caggccggcg ttcttcttcg
     4021 cgatgaccac gccctcgtag gcctggacgc gctcgcggtt gccttccttg accttgacgt
     4081 tgacgacgac ggtgtcgccc gggccgaacg ccggcagcgc gcgctgcgcc tgggcggctt
     4141 cgaattcctg gacgagggtg ttgagcgagg gcttgttcat gggtgtggcc ttgttggaat
     4201 gccggccatg ccggctgttg tagcgcgagt gcacgtggac ccgcgtcttg gcatcggtgg
     4261 agcgaagccg cgcattatag cggcactttt tcctgccgcg ccagcgcctt acgcgtccgg
     4321 atcgggctcc ccgccctgcc cggccaggaa ctcgtcgagc agccggcggt cggccggggc
     4381 cagcgtcgcc ccgtccagca ggtccgggcg gcgccggaag gtccggccca gggcctgcat
     4441 ccgccgccag cgggcgatgt cggcatggtt gccggacaac agcacgtccg ggacccgccc
     4501 cagcgcgtgc tcgaccggcc gggtgtagtg cggacagtcg agcaggccct cctcgaaact
     4561 gtcctgggcg gccgattccg cgtcgttcag cgccccctcc tgcaggcggg caacggcgtc
     4621 gacgaccacc gccgccgcca gttccccgcc cgacagcacg tagtcgccga tcgacagctc
     4681 ctcgtcgacc tcggcctgga ccaggcgttc gtcgatgccc tcgtagcggc cgcagagcag
     4741 gaccagccgc tcgcggccgg cgagttcacg caccttggcc tgggtcaggc gcgtgccctg
     4801 cgggctcagg tagaccaccc gcgcgggcgc cgggtcggcc gcacgcgcgg cggcgaggca
     4861 cgcgcgcagc ggatcgatca gcatcaccat gccggggccg ccgccgaacg ggcgatcgtc
     4921 gacgcggcgg tagttgccct cggcgtaatc gcgcggattc cagccgtgca gggccagcaa
     4981 cccccgctcc tgcgcccgcc cgaccacgcc gaaaccggcg cactgggcga cgaattcggg
     5041 aaacaggctg acgacgtcga tgcgcatcgc gggctagaag tcggcgtccc agtcgaccgt
     5101 gaccacgccc ttgtcgaagt cgaccgaccg cacgtagtcc ggctcgagga acgggatcat
     5161 ccgctcgcgc tcgccctgca ccaccatgac gtcgttgaca ccggtcgaga acaggtgcga
     5221 gaccgtgccg aagtcgatgc cctcgaggtt ggagacgcgc aggccttcga ggtcgatcca
     5281 gtagtactcg ccgggctgcg gcggcggcag cacggaccgc tccacccaca cttcgctgcc
     5341 gagcagcgct tccgcggcgt cgcggtcctc gatgccggga aagcgcgcga ccacgccctt
     5401 gggggtgatc cgtccgcgcg cgccggaaac atcgcgcgcg ccaccctgcg ccggccgcag
     5461 cgtccagggc tggtagcgga agatggcgtc cgcgggttcg gtgaaggatt cgagcttcaa
     5521 ttcgccgcgc acgccgaacg cgccgcggac ccgtcccagc aggacgtgtc gctgctgggc
     5581 ggaacgcggc gcgtcggtca tcgcgatgcg ggcgcggcca gcgcgcccgg acctcaggcg
     5641 gccttgccgg cctgcttgta gaggttggcg accttgtcgg tcatctgcgc accctggccg
     5701 atccagtact gcatgcgtcc ggcatccagt tcgacccgct tctcgttgcc cgaggccacc
     5761 gggttgtaga agccgacgcg ctcgatgttg cggccgtcgc gcgcgctgcg gctgtcggtg
     5821 acgatgatgt ggtagaaggg gcgcttcttg gcgccgccgc gggtgaggcg gatcttgacc
     5881 atggtgtctg cggtgttgcc cagctgccgg gatggcaggg taagccggcc attgtaagcc
     5941 attgatcggg cgcccggaac ccatgcgcgc cccggcggca ggaaggcggg cgagcgtcca
     6001 taaggcccac cccgtgagga aagtgtgacg ccgcgcatgg tgcaaagcag cgtggcgtca
     6061 cgctgcgccg gcgtgatact ccgccggtca gcgagcggcc aggggccgcg gtgaccgggc
     6121 cggaagccac ccgcccgcct gtcctccggc gccagccgga gcccttccca tagcaagggt
     6181 taccgcaatg aaccactcac gtctgcagtc cgcgatcgtg ctttccggtt gcgtcggcct
     6241 ggcgctggcc tcgatggccg gcttcgccgc caccacccgc gatacgcccc gcaagaacgt
     6301 caacagcaat gccagctaca agccgaccgg caagggctac ggtcagatcg acctgctcga
     6361 accggccaag cccaccggca atggcaagcc gagcggcagc aacggcatca actaccacgg
     6421 cggaccgctg atcctgggca ccaccaacgt ctattacatc tggtacggca actggagcgg
     6481 caacaccgcg acgaacatcc tcaccgacct ggcccagaac atgggcggct cgccgtactt
     6541 caacatcaac accacgtact acaacggcag caacgtgcgc gtcagcaacg cggtgagcta
     6601 caagggcgcg accaacgaca gctactcgca gggcaccgcg ctcagcgacg ccggcgtgca
     6661 ggccgtggtt tccagcgcga tcagcagcgg caggctgccg aaggacacca acgcggtcta
     6721 cttcgtgctg acctcagccg acgtcaacga gacctccggc ttctgcacgc agtactgcgg
     6781 ctggcacacg cacggcaccg tgctgggctc ggacatcaag tactccttcg tcggcaaccc
     6841 ggaccgctgc ccgtcctcgt gcgccgcgca gacctccggc ccgaacggca acgcaggcgc
     6901 cgacggcatg gcgagcatca tctcgcacga gctcgaggag gccgtcaccg atcccgacct
     6961 caacgcgtgg tacgaccgcc gcggccagga aaacgccgac aagtgcgcat ggaccttcgg
     7021 caccacgtac acctcgggcg gcgccaaggc caacgtccac ctcggcaccc gcgactacct
     7081 gatccagcag aactgggtca acgcgagcgg cggctactgc tcgatgtcgt actgagcccc
     7141 gcgggccgcg cggcgacgcg cggcccgttt cctttcccga tgaccgggcg tgccgcgcgc
     7201 cgaaccagcg gcgcggccgg ccgatgactt ccctgccggc catgcgcatg ttcccccgca
     7261 cctgctgtgt cctgttgtgg gccttcctcg cctgcccggc gacggcgcaa caggtctcgc
     7321 ccacgcgcgg cgtggtggtg ttctcgcaac tcgaaggcga actggcgacc gcggtgggcg
     7381 gcggcgacca gcccggcgtg gatcgcctgc tgtccgccga gttcgaacag cgcgcggcga
     7441 ccgcgcccga ccagccgcaa ccgcgcgcgg aatggctggc cgaacgcaag ggcgcggccg
     7501 cctggacgcc cacccgcatg gccgtgcacg actacggcga catcgcggtg gcgagtttcg
     7561 tcgccgaggg cggagcggcg cgatcgaccg tgatcgacat ctggcgccgg cacggcgccg
     7621 actggcagct gcaactgcgc ttcgtggcgg ccgcccccgc cgaagcgcca caggacgcca
     7681 ggccggacgg caagcactga agcgccgcgg cgccttcggt ccgcaagccg gggccggcgc
     7741 cggaagaagg ggactttcgc agccccgggc cgtgggccgg ggtcggacgg tcagcggaac
     7801 ggcatcccgc cgcgcgcgcc catcatgccc ttcatgccgc gcatcaggcc cttcatcccg
     7861 ccgcccgaca gcttcgacat catcttctcc atctgctggt actgcttcat cagcttgttg
     7921 acgtcggccg gctgcatgcc ggcgccgcgc gcgatgcggg cgcggcgcga accgttgagc
     7981 agcgccgggt tgcgccgctc cttcttcgtc atcgaattga tgatcgcgat catccgcggc
     8041 acttccctgc cggtgacctg ctgcttgacg tgctcgggca cctggccgat gcccggcagc
     8101 ttgtccatca gccccgacag gccgcccatg ttctgcatct gctcgagctg gtcgcgcatg
     8161 tcgttgaggt cgaacttctt gcccttgacg accttctcgg cgagtttggc cgccttgtcc
     8221 ttgtcgacct gctgctcgac ctgctcgacc agcgacagca cgtcgcccat gtcgaggatg
     8281 cggctagcga tacggtcggg atggaagacg tcgaggccgt cgaccttctc gccggtgccg
     8341 atgaacttga ccggcttgcc ggtgatgtag cgcaccgaca gcgcggcgcc gccgcgcgcg
     8401 tcgccgtcgg tcttggtcag caccacgccg gtgagcggca gcgcctcgct gaaatgcctg
     8461 gccgtcgtcg cggcgtcctg gccggtcatc gagtcgacga cgaacagcgt ctcgatcgga
     8521 ttcagcgccg cgtggaggtg cttgatctcc gccatcatct cggcgtcgac gtgcaggcgg
     8581 ccggcggtgt cgacgatcag cacgtcggcg aaattcttct tcgcggcatc gagcgcatgt
     8641 ttcgcgatct cgaccggatc ctgctcgccg ctcgacggat ggaacagcac gtcgacc
//
LOCUS       DATIQC010000396         8268 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_379044, whole genome shotgun sequence.
ACCESSION   DATIQC010000396 DATIQC010000000
VERSION     DATIQC010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8268)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8268)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8268
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_379044"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VLM17_08525"
     CDS             complement(<1..347)
                     /locus_tag="VLM17_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HSR65626.1"
                     /translation="MSRLFRDVQGGPLCPQGSVVCIGAFDGLHRGHQALIGCVRTRAR
                     ELGLPLVVLSFEPLPREFFMAPEPPARLILPAAKIAGLQSLEVDVIGLLRFNPAMVAM
                     AADDFVRAVLVAKL"
     gene            complement(463..2046)
                     /gene="murJ"
                     /locus_tag="VLM17_08530"
     CDS             complement(463..2046)
                     /gene="murJ"
                     /locus_tag="VLM17_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004148451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HSR65627.1"
                     /translation="MLRGLLSFSSMTMVSRVLGLVRDQSISYVFGASAATDAFMVAFR
                     IPNFMRRLFAEGSFSTAFVPVFTEVKETRPHAELRELVSRVGGTLAVVLLAVTVLGLL
                     FAPQIAVVFAPHDAHKLDLLTSLIRLTFPFLLFVSLTALAAGVLNSFHRFGLPALAPV
                     ILNLCMIGGALWLAPRLQVPIMAMGWAVLAAGLLQLLFLLPALGRLDLLAVPRWGWHH
                     AGVRKVMRLMVPTLFGSSVAQINLLLDTWIAAYLLTRSQTWLSLADRFLELPLGVFGI
                     ALGTVMLPSLAQHHVNADRERFSRALDWGLRNTLLISVPAALGLMLLSEPLVATMFQH
                     GHFTAFDSRMTALSVFGLSFGLPAFALVKVVLPAFYARQDTKTPVRAGMSALVANMLL
                     NFAILALLYALLVPDALKARGVWQGLANTPGLHLALGIASALASYLNLGLLWRWLRRD
                     GVYQAQPGWGRFTLRLALACLALCVVVGLGLYVGPDFTTAPVMVRLAWLFGLVGAGGA
                     AYAAVLVAMGWRLRELREH"
     gene            2196..2465
                     /gene="rpsT"
                     /locus_tag="VLM17_08535"
     CDS             2196..2465
                     /gene="rpsT"
                     /locus_tag="VLM17_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HSR65628.1"
                     /translation="MANIKSAQKRAKQTVVRNARNAAQRSMLRTAVKKVLKAIDANDA
                     AAAKAAFDVAQPILDRFSSRGLIHKNKAARHKSRLTARIKALQAA"
     gene            complement(2531..3583)
                     /gene="obgE"
                     /locus_tag="VLM17_08540"
     CDS             complement(2531..3583)
                     /gene="obgE"
                     /locus_tag="VLM17_08540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HSR65629.1"
                     /translation="MKLVDEAEITVVAGNGGNGAVSFRREKFIPLGGPDGGDGGDGGS
                     VWLQADENLNTLVDFRHQRMFRAQRGENGMGRQMYGKGGADTTVTVPVGTVVTNVGTD
                     EVIGDLARHGDRLLVARGGKGGLGNMHFKSSVNRAPRRATPGGEGEERTLMLELKLLA
                     DVGLLGFPNAGKSTFIRAVSAATPKVADYPFTTLYPNLGVVSVEPHKSFVIADIPGLI
                     EGAAEGAGLGSLFLRHVQRTRLLLHLVDLAPMEGGVEGVSPAEQVRAIEHELRKYDPG
                     MLEKPRWLVLNKADLMFEDEARARAEEVVRELGWTQPWFLVSALGREGTWPIMLEVQR
                     FFDRLREDAADAATGA"
     gene            complement(3706..3966)
                     /gene="rpmA"
                     /locus_tag="VLM17_08545"
     CDS             complement(3706..3966)
                     /gene="rpmA"
                     /locus_tag="VLM17_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HSR65630.1"
                     /translation="MAHKKAGGSTRNGRDSNPKYLGVKLYGGQAVEAGNIIVRQRGTQ
                     FHPGSGVGLGRDHTLFALVDGVVEFATKGPKKRRTVSVVGAA"
     gene            complement(3979..4296)
                     /gene="rplU"
                     /locus_tag="VLM17_08550"
     CDS             complement(3979..4296)
                     /gene="rplU"
                     /locus_tag="VLM17_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HSR65631.1"
                     /translation="MYAVLVTGGKQYRVMQGETLRVELLEAEAGSELTFDNVLMLGDA
                     DGIKVGEALKGATVTAKVVGHGRADKVRIVKFRRRKHHRKQMGHRQHYTEIQITGIAG
                     GNK"
     gene            4708..7686
                     /gene="uvrA"
                     /locus_tag="VLM17_08555"
     CDS             4708..7686
                     /gene="uvrA"
                     /locus_tag="VLM17_08555"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003479070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HSR65632.1"
                     /translation="MAMDFIRIRGARTHNLKNIDLDLPREQLIVITGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLSVMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT
                     ITEIYDNLRLLYARVGIPRCPDHGYPLEAQTVSQMVDQVLALAKDPARAEQRWMLLAP
                     VIRDRKGEHAQVFDQLRAQGFVRVRVDGVLHEIDAVPPLALRQKHTIEAVIDRFKVRD
                     DLKQRLAESFETALKLGDGMAAVQSLDDEAALPLLFSSKYSCPVCDYSLPELEPRLFS
                     FNAPMGACPTCDGLGVSQFFDPARVVVHPELSLAAGAVRGWDRRNVYYFQLIASLARH
                     YGFSVDTAWQDLDEAKRQAVLFGSGNESISFTYLTDAGGRTQRRHRFEGIIPNLERRY
                     RETESAAVREELAKYISERPCTDCGGARLNRSARNVFVADTPMQDIVVQPVDGALAFF
                     GQLELPGWRGEIAAKIVKEIRERLRFLVDVGLDYLTLERKADTLSGGEAQRIRLASQI
                     GAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRLADHVVD
                     IGPAAGVHGGEVVAEGKLDDILKAPRSLTGQYLSGKKRIEVPRERHKPNRKMTLRLLG
                     ATGNNLKDVDLEIPAGLFTCITGVSGSGKSTLINDTLYALAANEINGASHKPAAHREV
                     EGLDLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRELFASVPEARARGYSPGRFSFN
                     VRGGRCEACQGDGLIKVEMHFLPDVYVPCDVCHGKRYNRETLEILYKGYSIHDVLEMT
                     VEDALKLFEPVPALARKLETLVDVGLSYIKLGQSATTLSGGEAQRVKLSKELSRRDTG
                     RTLYILDEPTTGLHFHDIEHLLAVLHKLRDEGNTIVVIEHNLDVIKTADWIVDLGPEG
                     GHRGGEVIAVGTPEEVAGVAHSYTGQFLARLLGTEARPSKPAPAPRAEPPRPPTKAQK
                     LAAKKAAAEAAKPPKRKSAA"
     gene            7683..8102
                     /locus_tag="VLM17_08560"
     CDS             7683..8102
                     /locus_tag="VLM17_08560"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HSR65633.1"
                     /translation="MSEGTPAPTLFRMPVALRWRDLDAFNHVNNSNFLTYLEDARIRW
                     FASWQGEWVTEATAPLLASVQLNYRRPIPYPADIAVELFAERLGNSSVTVGHRIASAD
                     GGTLYADGHVVMVWIDRASGRPVPLPDVVRAACRPAG"
BASE COUNT         1338 a         3004 c         2773 g         1153 t
ORIGIN      
        1 agcttggcca ccagcaccgc gcggacaaag tcgtcggccg ccatcgcgac catggccggg
       61 ttgaagcgca gcaggccgat cacatcgacc tcgagcgact gcagtccggc aatcttggcg
      121 gccggcagga tgagacgtgc cggcggctcg ggcgccatga agaattcgcg cggcagcggt
      181 tcgaaactca gcaccacgag gggcaggccg agttcgcgcg cacgggtgcg gacgcagccg
      241 atcagcgcct gatgaccccg atgcaggccg tcgaacgcac cgatgcagac cacgctgcct
      301 tgcggacaca acggtccgcc ctggacgtca cggaacagcc tgctcatgcc gggtcttggt
      361 tggcgacccg gcgtcgacgg ccgggccgag gccctgaacg ggccgtcgga gaatcacgcg
      421 catgaagtat agccgccgcg tcccggcctc aaggcggggc cctcaatgct cgcgcagctc
      481 gcgcaggcgc cagcccatcg ccaccagcac cgccgcgtac gccgcgccgc cggccccgac
      541 cagcccgaac agccaggcca ggcgcaccat caccggcgcg gtggtgaagt cgggccccac
      601 gtacaggccg agccccacca ccacgcacag cgccaagcag gccagcgcca gccgcagcgt
      661 gaagcgcccc cagcccggct gcgcctggta gacgccatcg cggcgcagcc agcgccacag
      721 caggccgagg ttgaggtagc tcgccagcgc gctggcgatg ccgagcgcga ggtgcaggcc
      781 cggcgtgttc gccaggccct gccacacgcc gcgcgccttc agcgcatccg gcaccagcag
      841 cgcgtacagc agggcgagga tggcgaagtt gagcagcatg ttggcgacca gcgcggacat
      901 gccggcgcgc accggcgtct tcgtgtcctg gcgcgcgtag aacgccggca gcaccacctt
      961 caccagggcg aaggccggca ggccgaagct cagcccgaac acggacagcg ccgtcatccg
     1021 gctgtcgaag gcggtgaaat gcccgtgctg gaacatcgtc gccaccagcg gttcggacag
     1081 cagcatcagc ccgagcgccg ccggcaccga gatcagcagc gtgttgcgca ggccccagtc
     1141 gagcgcccgc gagaagcgtt cgcggtcggc gttgacgtgg tgctgcgcca gcgaaggcag
     1201 catcaccgtg cccagggcga tgccgaacac gcccagcggc agctcgagga agcggtcggc
     1261 cagcgacagc caggtctgcg agcgggtgag caggtaggcg gcgatccagg tgtccagcag
     1321 caggttgatc tgcgcgacgg aggaaccgaa cagcgtcggc accatcagcc gcatcacctt
     1381 gcgcacgccg gcgtggtgcc agccccagcg cggcacggcg agcaggtcga gcctgcccag
     1441 cgccggcagc aggaacagca gctgcaggag gccggcggcg agcaccgccc agcccatcgc
     1501 catgatcggc acctgcagcc gcggcgccag ccacagcgcg ccgccgatca tgcacaggtt
     1561 gaggatcacc ggcgccagcg ccggcaggcc gaaccggtgg aagctgttca gcacccccgc
     1621 cgccagcgcg gtcagcgaca cgaacagcag gaacgggaag gtgagccgga tcaggctggt
     1681 cagcaggtcg agcttgtgcg cgtcatgcgg cgcgaacacg accgcgatct gcggggcgaa
     1741 cagcagcccc agcaccgtca ccgccagcag cacgacggcg agcgtgcccc cgacccgcga
     1801 caccagctcg cgcagctcgg cgtgcgggcg ggtctccttg acctcggtga agacggggac
     1861 gaacgccgtc gagaacgacc cctcggcgaa cagccggcgc atgaagttgg ggatgcggaa
     1921 ggcgaccatg aacgcatcgg tcgccgcact ggcgccgaac acgtagctga tcgactggtc
     1981 gcggaccagg ccgagcaccc gcgagaccat ggtcatgctg ctgaacgata gcagcccgcg
     2041 cagcatgccg ggccggtgcc gggtcgccgg gtgccgggcc ggacccgggc cgctcatcgc
     2101 cgacctgccc ggtggttgac ccaagcccct gaatcgccca tacttttctg tctgtttttg
     2161 ccgattccca tttcccaggt ttccaggatt ccacagtggc caacatcaag tccgcccaga
     2221 agcgcgccaa gcagaccgtc gtgcgcaacg cccgcaacgc cgcccagcgt tcgatgctgc
     2281 gcaccgccgt caagaaggtg ctgaaggcga tcgatgccaa cgacgccgcc gccgccaagg
     2341 ccgcgttcga cgtcgcccag ccgatcctcg accgcttcag ctcgcgcggc ctgatccaca
     2401 agaacaaggc cgcccgccac aagagccgcc tgaccgcgcg catcaaggcg ctgcaggccg
     2461 cctgaggccg gttcgttccg atccgcgaaa aacccggccc cggccgggtt ttttgttgcc
     2521 tggtgcacct tcaggcgccc gtcgccgcgt cggcggcgtc ctcgcgcagg cggtcgaaga
     2581 agcgctgcac ctcgagcatg atcggccagg tgccttcgcg gccgagcgcg gagacgagga
     2641 accacggctg ggtccagccg agttcgcgca ccacttcctc cgcgcgcgcg cgcgcctcgt
     2701 cctcgaacat caggtcggcc ttgttgagca cgagccagcg cggcttctcc agcatgcccg
     2761 ggtcgtactt gcgcagctcg tgctcgatcg cccgcacctg ctcggcgggg gacacgcctt
     2821 cgacgccgcc ttccatcggg gcgagatcca ccaggtgcag caggagccgc gtgcgctgca
     2881 cgtggcgcag gaacaggctg ccgaggccgg cgccttcggc cgcgccttcg atcaggccgg
     2941 gaatgtcggc gatgacgaag ctcttgtgcg gctcgacgct gaccacgccg aggttcggat
     3001 agagcgtggt gaacggatag tccgcgacct tcggcgtcgc cgcggacacc gcgcggatga
     3061 aggtcgactt gcctgcgttg gggaacccga gcaggccgac gtcggcgagc agcttgagct
     3121 cgagcatcag cgtgcgctcc tcgccctcgc cacccggggt cgcccgccgc ggcgcgcggt
     3181 tcaccgagct cttgaaatgc atgttgccca ggccgccctt gccgccgcgc gccaccagca
     3241 ggcggtcgcc gtggcgggcg agatcgccga tgacctcgtc ggtcccgacg ttggtgacga
     3301 ccgtgccgac cggcaccgtc accgtcgtgt cggcgccgcc ctttccgtac atctgccggc
     3361 ccatgccgtt ttcgccgcgc tgggcgcgga acatgcgctg gtggcggaag tcgacgagcg
     3421 tattgaggtt ctcgtcggcc tgcagccaca cgctcccccc gtcgccgccg tcaccgccgt
     3481 ccgggccacc gagcgggatg aacttctcgc gccggaagct cacggcgccg ttgccgccat
     3541 tgccggcgac cacggtgatt tcggcttcgt cgactagttt cacggttctg gatctggatt
     3601 cgggacgacc ggcaggaccg gcgatgtcga ctgggggagt ctagcggggt gacaaacgaa
     3661 aagccccgcc ggagcggggc ttcccgaggg aacgtgcgtc gcagcttacg ccgcgccgac
     3721 cacgctcacg gtgcgacgct tcttcgggcc cttggtcgcg aattcgacca cgccgtcgac
     3781 cagcgcgaac agggtgtggt cgcggccgag gccgacgccc gaacccgggt ggaactgggt
     3841 gccgcgctgg cggacgatga tgttgcccgc ttcgaccgcc tggccgccgt acagcttgac
     3901 gccgaggtac ttcgggttcg agtcgcggcc gttacgggta ctgccgcctg cctttttgtg
     3961 tgccatggcc ggtgctcctt acttgttgcc gccggcaatg ccggtgatct ggatttcggt
     4021 gtagtgctgc cgatggccca tctgcttgcg atggtgcttg cggcggcgga acttgacgat
     4081 gcggaccttg tcggcgcggc cgtggccgac gaccttcgcg gtgaccgtgg cgcccttcag
     4141 cgcctcgccg accttgatgc cgtcggcgtc gccgagcatc aggacgttgt cgaaggtgag
     4201 ctcgctgccg gcttcggcct cgaggagctc gacgcggagc gtctcaccct gcatcacgcg
     4261 gtattgctta ccgccggtga ccagaactgc gtacatgacc aggcagtcct ctgtagttat
     4321 tgtggtcgca gcctgccatc gagggcagac aggagcggaa gtttagggct ttcagggagt
     4381 tagcgtcaac cagcccgctg ccgcgaccga cggccccggg cggtcccggg gaccaggacc
     4441 cgacgggccg tccccgcggc atcccggtgg cccgccgccg gaagccgttc ccggcggtcg
     4501 ggcgggcatc cggcctgccc cgatccgggt tccggggctt cacccccgtg aaccggcccc
     4561 gtcgcaccgc ctgcgaccga ccgcctgaat gctgggctcc cggcgatttg cccccaaatc
     4621 gggggctcgc tacgctcacc tgttcggtcc cgacccgctc ggcggccgca ttccccgtcc
     4681 cccgactgcc cgaggccgat ttccccgatg gcgatggact tcatccgcat ccgcggcgcg
     4741 cggacgcaca acctcaagaa catcgacctc gacctgccgc gcgaacagct gatcgtgatc
     4801 acggggctgt ccggctccgg caagtcctcg ctggcgttcg acaccatcta cgccgaaggc
     4861 cagcgccgct acgtcgagtc gctgtcggcc tacgcgcggc agttcctgag cgtgatggag
     4921 aagcccgacg tcgaccacat cgagggcctg tcgccggcca tctcgatcga acagaagtcg
     4981 acctcgcaca acccgcgctc gaccgtcggc accatcaccg agatctacga caacctgcgc
     5041 ctgctgtatg cccgcgtcgg catcccgcgc tgccccgacc acggctatcc gctggaggcg
     5101 cagacggtca gccagatggt cgaccaggtg ctggccctgg cgaaggaccc ggccagggcc
     5161 gagcagcgct ggatgctgct cgcgccggtg atccgcgacc gcaagggcga gcacgcgcag
     5221 gtgttcgacc agctgcgcgc gcagggcttc gtgcgcgtgc gcgtggacgg cgtgctgcac
     5281 gagatcgacg ccgtgccgcc gctcgcgctg cgccagaagc acaccatcga ggcggtgatc
     5341 gaccgcttca aggtgcgcga cgacctcaag cagcgactcg ccgagtcgtt cgagaccgcg
     5401 ctcaagctcg gcgacggcat ggccgccgtg cagtcgctcg acgacgaggc cgcgttgccg
     5461 ctgctgttct cgtccaagta cagctgcccg gtgtgcgact actcgctgcc ggaactcgag
     5521 ccgcggctgt tctccttcaa cgcgccgatg ggcgcctgcc cgacctgcga cggcctcggc
     5581 gtttcgcagt tcttcgaccc ggcgcgcgtg gtcgtgcacc cggaactctc gctcgccgcc
     5641 ggcgcggtgc gcggctggga ccggcgcaac gtctactact tccagctgat cgcgtcgctc
     5701 gccaggcact atggcttcag cgtcgacacc gcgtggcagg acctcgacga ggcgaagcgc
     5761 caggccgtcc tcttcggcag cggcaacgag tcgatcagct tcacctacct caccgacgcc
     5821 ggcggccgga cccagcgcag gcaccgcttc gagggcatca tccccaacct cgagcgccgc
     5881 taccgcgaga ccgaatcggc ggcggtgcgc gaggaactcg ccaagtacat cagcgagcgg
     5941 ccctgcaccg actgcggcgg cgcgcgcctg aaccgcagcg cgcgcaacgt gttcgtcgcg
     6001 gacacgccga tgcaggacat cgtcgtgcag ccggtcgacg gcgccctcgc cttcttcggc
     6061 cagctcgagc tgccgggctg gcgcggcgag atcgcggcca agatcgtcaa ggagatccgg
     6121 gagcgcctgc gcttcctggt cgacgtcggc ctcgactacc tcacgctgga gcgcaaggcc
     6181 gacacgctgt cgggcggcga ggcgcagcgc atccgcctcg cctcgcagat cggcgccggc
     6241 ctcgtcggcg tgatgtacgt gctcgacgag ccgtcgatcg gcctgcacca gcgcgacaac
     6301 gagcgcctgc tcggcaccct cacccgcctg cgcgacctcg gcaacacggt gatcgtggtc
     6361 gagcacgacg aggacgcgat ccggctggcc gaccacgtgg tcgacatcgg tcccgccgcc
     6421 ggcgtgcacg gcggcgaggt cgtggccgag ggcaagctcg acgacatcct gaaggcgccg
     6481 cgctcgctga ccggccagta cctgtcgggc aagaagcgca tcgaggtgcc cagggagcgg
     6541 cacaagccga accgcaagat gaccctgcgc ctgctcggtg ccacgggcaa caacctcaag
     6601 gacgtcgacc tcgagattcc ggccgggctg ttcacctgca tcaccggcgt gtcgggctcc
     6661 ggcaagtcga cgctgatcaa cgacaccctg tacgcgctgg ccgccaacga gatcaacggc
     6721 gcctcgcaca agcctgccgc gcaccgcgag gtggaaggcc tggacctgtt cgacaaggtc
     6781 gtcgacatcg accagtcgcc gatcgggcgc accccccgtt ccaacccggc cacctacacc
     6841 ggcctgttca ccccgctgcg cgagctgttc gcatcggtgc cggaggcgcg cgcgcgcggt
     6901 tattcgccgg gccgcttctc cttcaacgtg cgcggcggcc gctgcgaggc ctgccagggc
     6961 gacggcctga tcaaggtcga gatgcacttc ctgccggacg tgtacgtgcc ctgcgacgtc
     7021 tgccacggca agcgctacaa ccgcgagacg ctggagatcc tctacaaggg ctacagcatc
     7081 cacgacgtgc tggagatgac ggtcgaggac gcgctgaagc tgttcgaacc cgtgcccgcg
     7141 ctggcgcgca agctggagac gctggtcgac gtcggcctga gctacatcaa gctcggccag
     7201 agcgcgacca cgctgtccgg cggcgaggcg cagcgcgtca agctgtccaa ggaactctcg
     7261 cgccgcgaca ccgggcgcac gctctacatc ctcgacgagc cgaccaccgg cctgcacttc
     7321 cacgacatcg agcacctgct cgccgtgctg cacaagctgc gcgacgaggg caacacgatc
     7381 gtggtgatcg agcacaacct cgacgtgatc aagaccgccg actggatcgt cgacctcggc
     7441 ccggaaggcg gccaccgcgg cggcgaggtc atcgccgtgg gcacgccgga agaggtggcg
     7501 ggcgtcgcgc attcctacac cggccagttc ctcgccaggc tgctgggcac ggaggcgcgg
     7561 ccgagcaagc ccgcgcccgc cccgcgcgcg gagccgccgc ggccgcccac gaaggcgcag
     7621 aagctggccg cgaagaaagc cgccgccgag gccgccaagc caccgaaacg gaagtccgcc
     7681 gcatgagcga gggcacgccc gcaccgacgc tgttccgcat gccggtcgca ctgcgctggc
     7741 gcgacctcga cgcgttcaac cacgtcaaca attccaactt cctcacctac ctcgaggacg
     7801 cgcgcatccg ctggttcgcg agctggcagg gcgaatgggt gacggaggcg acggcgccgc
     7861 tgctcgcctc ggtacagctc aactaccggc gacccatccc ctatcccgcc gacatcgcgg
     7921 tcgagctgtt cgccgaacgc ctcggcaaca gcagcgtcac cgtcggccat cggatcgctt
     7981 ccgccgacgg cggaacgctg tacgccgacg gccatgtggt catggtctgg atcgaccgcg
     8041 ccagcggccg gccggtgccg ctgccggacg tggtgcgcgc cgcctgccgg cccgcgggct
     8101 gacgggcctg cggcggacaa agcgagtcgc aagcggacct gtgagacagg gccacggggc
     8161 ctgtctccgg ttgcatcacg gcactgccgg gcgcacctcg aatccgccgt ccacgccgcg
     8221 gccgtcctgc agttgcaggc ggatcgcgac gtggtccccc accttcgg
//
LOCUS       DATIQC010000397         3093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_556456, whole genome shotgun sequence.
ACCESSION   DATIQC010000397 DATIQC010000000
VERSION     DATIQC010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_556456"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1576)
                     /locus_tag="VLM17_08565"
     CDS             complement(<1..1576)
                     /locus_tag="VLM17_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSR65634.1"
                     /translation="MTTALRDAIDYTTLGWVKPELDETLRQARIEIEAFAEDPADTSR
                     MRFCAGYLHQVQGTLRMVELYAPAMVAEEMERLAIALQDGRVPDRDEACATLMRGVVL
                     LPDYLERLQGGHKDIPIVLLPLLNELRAVRGESGLSESVLFAPDLQKPLPDVLVATPG
                     ESRAERGANAAPLLAQLQDVLAAWPEGGAPANPAALAAAVDGLLAQTAEEAGRRMLWV
                     ASSVAGAVRDGALPPTPALRQAFASVEREARQLLDQQPAAMPRADAALEPTRQLLYHV
                     AHADGDHAALRDLRSTFELDAQGPSESELAHALGSVTGRNRALLDTVAAAVKEDLLRV
                     KDALDLHLRGGQHDIATLQPQVEALGRVADTLGMLGLGIARNVVQQQRDALAGIVGGS
                     READEGALLDVAGALLYVDASLDEQVQRLGGPADGADEDLLAAESRRVTEVLAREAIA
                     NFADARQAFVAFVETNWDHAELAEVPRLLQEVSGALQMLELACPAELLSGVRLYTESE
                     LIARHRVPNGRQLDTLA"
     gene            complement(1679..>3093)
                     /locus_tag="VLM17_08570"
     CDS             complement(1679..>3093)
                     /locus_tag="VLM17_08570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005988635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HSR65635.1"
                     /translation="LARDAGVFAQVLNGLRQGDAALNVQKLANPAALGSLNQTTTLWT
                     DMKKDLDAILGSSQALFQAQSSAAGITTGSDKLLGDSETLFRALTAFGSLRDTSIIGG
                     VWVSIISGALTVLSIAGLLFSLSRAQRKRYETTMELNNRNQEAIMRLLDEMGSLAEGD
                     LTVKATVTEDMTGAIADSINFAVEQLRSLVATINDTSVQVAASAQDTQATAMHLAEAA
                     EHQAQEISSASDRISEIAASINQVSKNSAESAEVAQRSVQIATNGAGVVRQTIAGMDS
                     IRDQIQETSKRIKRLGESSQEIGSIVELINDISEQTNILALNAAIQAASAGEAGRGFA
                     VVADEVQRLAERASNATKRIETLVQTIQSDTNEAVSSMEQTTSEVVAGARLAEDAGTA
                     LGEIEKVSSDLSGLIQGISAAAQQQSSAASNITQTMHTIQQITSQTTQGANQTAESIG
                     NLAQLAADLRRSVADFKLPA"
BASE COUNT          384 a         1055 c         1147 g          507 t
ORIGIN      
        1 cggcgagggt gtcgagctgg cgcccgttgg gcacgcggtg gcgcgcgatc agctcgctct
       61 cggtgtacag gcgcacgccg gacagcagct cggccgggca cgccagctcg agcatctgca
      121 gcgcgccgga gacttcctgc agcaggcgcg ggacttccgc gagttccgcg tggtcccagt
      181 tggtctcgac gaaggcgacg aaggcctggc gggcgtcggc gaagttggcg atcgcctcgc
      241 gcgccagcac ctcggtgacg cggcgcgatt cggccgcgag caggtcctcg tcggcgccgt
      301 cggcggggcc gcccaggcgc tgcacctgct cgtcgaggga tgcgtcgacg tagagcagcg
      361 cgccggcgac gtcgagcagc gcgccctcgt ccgcctcgcg gctgccgccg acgatgccgg
      421 cgagcgcgtc gcgctgctgc tggacgacgt tgcgggcgat gccgaggccg agcatgccga
      481 gcgtgtcggc gacgcggccg agcgcttcga cctgcggctg cagggtggcg atgtcgtgct
      541 ggccgccgcg caggtgcagg tcgagcgcat ccttgacccg cagcaggtct tccttcaccg
      601 ccgcggcgac ggtgtcgagc agcgcgcggt tgcggccggt gacgctgccc agcgcatgcg
      661 cgagctcgga ttcgctcggg ccctgcgcgt cgagttcgaa ggtgctgcgc aggtcgcgca
      721 gcgcggcgtg gtcgccgtcg gcatgggcga cgtggtacag cagctggcgg gtcggttcca
      781 gcgcggcgtc ggcgcgcggc atcgccgcgg gctgctggtc gagcagctgg cgcgcctcgc
      841 gctcgacgct ggcgaaggcc tggcgcagcg cgggcgtcgg cggcagcgcg ccgtcgcgca
      901 ccgcgccggc aacggacgaa gcaacccaca gcatgcggcg gccggcttcc tcggcggtct
      961 gcgcgagcag cccgtcgacg gcggcggcga gcgcggccgg attggcgggc gcgccgcctt
     1021 ccggccacgc ggcgagcacg tcctgcaact gcgcgagcag cggcgcggcg ttcgcgccgc
     1081 gttcggcgcg cgactcgccg ggggtcgcca ccagcacgtc cggcagcggc ttctgcagat
     1141 cgggcgcgaa cagcacgctc tcgctcaacc cgctttcgcc acgcaccgcg cgcaactcgt
     1201 tcagcagcgg cagcaggacg atggggatgt ccttgtggcc gccctgcagg cgctcgaggt
     1261 agtcgggcag caggaccacg ccgcgcatca gcgtggcgca ggcctcgtcg cggtcgggca
     1321 cgcggccatc ctgcagcgcg atggccaggc gttccatttc ctcggccacc atcgccgggg
     1381 cgtacagctc gaccatgcgc agggtgccct gcacctggtg caggtagccc gcgcagaagc
     1441 gcatgcggct ggtgtcggcg gggtcctcgg cgaaggcctc gatctcgatc cgcgcctggc
     1501 gcagggtctc gtcgagctcc ggcttgaccc agccgagcgt ggtgtagtcg atcgcgtcgc
     1561 gcagggcagt cgtcatcgtc cgcctcccaa tgatgcggcg cgcgcgttgc ggcgggcggc
     1621 cttgcggcag gctttcgcgg ccatgttcat ctcacgtgcc cgggtcgttg ctgccggatc
     1681 aggccggcag cttgaagtcg gcgaccgagc ggcgcaggtc cgcggcgagc tgggccaggt
     1741 ttccgatcga ctcggccgtc tggttggcgc cctgcgtggt ctgcgaggtg atctgctgga
     1801 tggtgtgcat cgtctgggtg atgttcgacg ccgcgctgga ctgctgctgc gccgccgccg
     1861 agatgccctg gatgaggccc gacaggtcgg acgacacctt ttcgatttcg cccagcgcgg
     1921 taccggcgtc ctcggcgagg cgcgcacccg cgaccacttc cgaggtcgtc tgctccatcg
     1981 agctgacggc ctcgttggtg tcggactgaa tggtctgcac cagcgtctcg atgcgcttcg
     2041 tcgcgttgga cgcgcgctcc gcgaggcgct gcacttcgtc cgcgaccacc gcgaagccgc
     2101 ggcccgcttc accggcggac gcggcctgga tcgcggcgtt cagcgcgagg atgttcgtct
     2161 gttccgagat gtcgttgatg agttcgacga tcgaaccgat ttcctgcgag ctctcgccca
     2221 ggcgcttgat gcgcttcgag gtttcctgga tctggtcgcg gatcgagtcc atgcccgcga
     2281 tcgtctggcg cacgacgccg gcgccattcg tcgcgatctg caccgagcgc tgcgccactt
     2341 cggcggactc ggcggagttc ttcgacacct ggttgatgct cgccgcgatt tcgctgatgc
     2401 ggtcggaggc ggaggagatc tcctgggcct ggtgctcggc ggcctcggcg aggtgcatgg
     2461 cggtcgcctg cgtgtcctgc gcgctggccg cgacctgcac cgaggtgtcg ttgatcgtcg
     2521 ccacgaggct gcgcagctgc tcgaccgcga agttgatcga gtccgcgatc gcgccggtca
     2581 tgtcctcggt cacggtcgcc ttcacggtga ggtcgccttc cgcgagagaa cccatctcgt
     2641 ccagcaggcg catgatcgcc tcctggttgc ggttgttgag ttccatcgtg gtctcgtagc
     2701 gcttgcgctg ggcgcggctc agcgagaaca gcaggccggc gatcgacagc acggtcagcg
     2761 cgccggagat gatcgacacc cagacaccgc cgatgatgct ggtgtcgcgc agcgagccga
     2821 acgcggtcag cgcgcggaac agcgtctcgc tgtcgccgag cagcttgtcc gagccggtgg
     2881 tgatgccggc ggccgaggac tgcgcctgga acagggcctg cgacgagccg aggatggcgt
     2941 cgaggtcctt cttcatgtcg gtccacagcg tggtggtctg gttgagcgaa cccagcgccg
     3001 ccggattggc gagcttctgc acgttcagcg ccgcatcgcc ctggcgcagg ccgttgagca
     3061 cctgcgcgaa cacgccggcg tcgcgcgcca gcg
//
LOCUS       DATIQC010000398         3149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_61176, whole genome shotgun sequence.
ACCESSION   DATIQC010000398 DATIQC010000000
VERSION     DATIQC010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61176"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..472)
                     /locus_tag="VLM17_08575"
     CDS             complement(<1..472)
                     /locus_tag="VLM17_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HSR65636.1"
                     /translation="MANKTFLLPDLGEGLPDATIVEWFVKEGDTIRLDAPLVSMETAK
                     AVVEVPSPVSGKVLKLAGGAGDVIVTGTMLAEFEIDPSLPQRAEGQDTGHHHGPPAAA
                     QTHGGVGKQAPENGGRVIASDDGGAISAAGTPAPKGEAREDAGTVVGAMQSSDAV"
     gene            complement(495..1505)
                     /locus_tag="VLM17_08580"
     CDS             complement(495..1505)
                     /locus_tag="VLM17_08580"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010367996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HSR65637.1"
                     /translation="MQDAKAPAATPAAITLIEAITQALAYEMRQDDSVVVLGEDVGVN
                     GGVFRATAGLHAQFGSGRVIDTPLDETTIAGLTVGMASQGMKPVAEAQFDGFVYPMVD
                     FIVCHAARMRYRTRGRLHCPMVLRVPWGGGIRAPEHHSEANEAIFTNVPGLRVVLPSS
                     PARAYGMLLAAIRDPDPVIFMEPKRIYRQYKEVVADDGEALPLDVCYVLRDGTDVTLV
                     TWGAQVKETLEAADKLAGEGISAEVIDVATLKPLDFATIAESVSKTGRCVIVHEAAKT
                     AGFGAEIGARLAEESMYDLLAPVERVTGYDTHIPLFRLEMKYLPSTDRIVAAAKRTLA
                     AG"
     gene            complement(1541..2611)
                     /gene="pdhA"
                     /locus_tag="VLM17_08585"
     CDS             complement(1541..2611)
                     /gene="pdhA"
                     /locus_tag="VLM17_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016850583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HSR65638.1"
                     /translation="MSIAAHFDIEYLQYLGPDGKPVAEFPAAFRDPKALLPLFKQMLY
                     VRTFDAKAIALQRTGKLGTYAASLGHEATHVGIGASMKPEDVFAPSYREYGAQFMRGV
                     RPREVLLYWGGDERGNDFSGPKQDYPWCVPISTQCLMAAGAALSFKLRGQKRIAVACC
                     GDGGSSKTDFYAAVNSAGAFTSPLVLCVINNGWAISVPRGAQTGAQTLAQKGLAGGLY
                     CLQVDGNDLIAVLEGMRRAGERARNGEGGSVIEFMTYRLHDHTTADDARRYRSEDEVK
                     DAWTRDPMTRLRTYLTAQKAWSESEEQAWAEECGRLVDVEINAYLETPVQPVEAMFDY
                     LYADMPADLQAQRAFALAQEGR"
     gene            2786..>3149
                     /locus_tag="VLM17_08590"
     CDS             2786..>3149
                     /locus_tag="VLM17_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005414712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase family protein"
                     /protein_id="HSR65639.1"
                     /translation="MAIEDNQRPLEAGIHTDLTGRVTYGGYLRLDRLLSAQQPLSAPP
                     HHDELLFIVQHQVSELWMKLMIHELAAAIEHVKADQLAPCFKILARVKQIQRQLFEQW
                     AVLETLTPNEYLEFRHVLG"
BASE COUNT          433 a         1100 c         1123 g          493 t
ORIGIN      
        1 gcaccgcgtc ggaggactgc atcgcgccga ccacggtgcc ggcgtcctcg cgcgcctcgc
       61 ccttcggcgc cggcgtgccg gcggcggaga tcgcgccgcc gtcgtcggag gcgatcacgc
      121 ggccaccgtt ctcgggcgcc tgcttgccga cgccgccgtg ggtctgcgcc gcggcgggcg
      181 ggccgtggtg gtggccggtg tcctggcctt cggcgcgctg cggcaggctg gggtcgatct
      241 cgaactcggc gagcatggtg ccggtgacga tgacgtcacc cgcgccaccg gcgagcttca
      301 gcaccttgcc ggagaccggc gacggcactt cgacgaccgc cttcgcggtt tccatcgaca
      361 cgagcggcgc atcgaggcgg atggtgtcgc cttccttcac gaaccactcg acgatggtgg
      421 catcgggcag gccctcgccg aggtcgggca gcaggaacgt cttgttggcc atgtgcgaag
      481 ggtctccggg aggatcagcc tgcagccagc gtgcgcttgg cggcggcgac gatgcggtcg
      541 gtgctcggca ggtacttcat ttccagccgg aacagcggga tgtgggtgtc gtagccggtg
      601 acgcgctcga ccggcgcgag caggtcgtac atcgactcct cggccaggcg cgcgccgatc
      661 tcggcgccga aaccggcggt cttggccgcc tcgtgcacga tcacgcagcg accggtcttg
      721 ctgaccgact cggcgatcgt cgcgaagtcg agcggcttga gcgtggcgac gtcgatgacc
      781 tcggcgctga tgccctcgcc ggcgagcttg tcggcggcct ccagcgtctc cttcacctgc
      841 gcgccccagg tcaccagggt cacgtcggtg ccgtcgcgca gcacgtagca cacgtccagc
      901 ggcagcgcct cgccgtcgtc ggcgaccact tccttgtact ggcggtagat gcgcttgggc
      961 tccatgaaga tgaccggatc cgggtcgcgg atcgccgcca gcagcatgcc gtaggcgcgc
     1021 gccggcgagg acggcagcac gacgcgcagg ccgggcacgt tggtgaagat cgcctcgttc
     1081 gcctcgctgt ggtgctcggg cgcgcggatg ccgccgcccc acggcacgcg cagcaccatc
     1141 gggcagtgca gccgcccgcg cgtgcggtag cgcatgcgcg cggcgtggca gacgatgaag
     1201 tcgaccatcg ggtagacgaa gccgtcgaac tgcgcctccg ccaccggctt catgccctgc
     1261 gaggccatgc cgacggtgag gcccgcgatg gtggtctcgt cgagcggggt gtcgatcacc
     1321 cgcccgctgc cgaactgcgc gtgcaggccg gcggtggcgc ggaacacgcc gccgttgacg
     1381 ccgacgtcct cgccgagcac gaccacgctg tcgtcctggc gcatctcgta ggccagcgcc
     1441 tgggtgatcg cctcgatgag cgtgattgcc gcgggggtgg ccgcgggcgc cttcgcgtcc
     1501 tgcatcgtgt ccttcttcgc ttgcgtggcg gtggcgttca tcagcgtccc tcctgcgcca
     1561 gcgcgaacgc gcgctgcgcc tggaggtcgg cgggcatgtc ggcgtagagg tagtcgaaca
     1621 tggcctcgac cggctgcacc ggcgtttcca ggtaggcgtt gatctcgacg tcgaccagcc
     1681 tgccgcactc ctcggcccag gcctgctcct cggactcgct ccacgccttc tgcgcggtga
     1741 ggtacgtgcg caggcgggtc atcgggtcgc gggtccacgc gtccttgacc tcgtcctcgc
     1801 tgcgatagcg gcgggcgtcg tcggcggtgg tgtggtcgtg caggcggtag gtcatgaact
     1861 cgatcacgct gccgccctcg ccgttgcgcg cgcgctcgcc ggcgcgacgc atgccctcga
     1921 gcacggcgat gaggtcgttg ccgtcgacct gcaggcagta caggccgccg gccaggccct
     1981 tctgcgccag cgtctgcgcg ccggtctgcg cgccgcgcgg caccgagatc gcccagccgt
     2041 tgttgatcac gcacagcacc agcggcgagg tgaacgcgcc ggcggaattg accgcggcat
     2101 agaagtcggt cttcgaggag ccgccgtcgc cgcagcaggc caccgcgatc cgcttctggc
     2161 cgcgcagctt gaacgacagc gccgcgcccg cggccatcag gcactgggtc gagatcggca
     2221 cgcaccaggg atagtcctgc ttcgggccgg agaaatcgtt gccgcgctcg tcgccgcccc
     2281 agtacagcaa cacctcgcgc ggcctcaccc cgcgcatgaa ctgcgcgccg tactcgcggt
     2341 agctgggggc gaacacgtcc tcgggcttca tcgacgcgcc gatgccgacg tgggtggcct
     2401 cgtggccgag gctggcggca taggtgccga gcttgccggt gcgctgcagg gcgatcgcct
     2461 tggcgtcgaa ggtgcgcacg tacagcatct gcttgaagag cggcagcagc gccttcgggt
     2521 cgcggaacgc ggcggggaat tcggcgacgg gcttgccgtc cgggccgagg tactgcaggt
     2581 attcgatgtc gaaatgcgcg gcgatgctca tgcggccaac ctcgtgcggc aagggcgcga
     2641 tgatagcaac tggcgtggaa gggcccgttg gcccgccctt ggcgcggcgg gcatgaccgt
     2701 cggcagttga cgcaggtcaa gccgcccgcc gggcacggcg atccggcccg tccggccggc
     2761 cggaacagcc cgttacaatc ggcgcatggc gatcgaagac aaccagcgcc cgctcgaggc
     2821 gggcatccac accgacctca ccgggcgcgt cacctacggc ggctacctgc gcctggaccg
     2881 cctgctgtcg gcgcagcagc cgctctccgc cccgccgcac cacgacgagc tgctcttcat
     2941 cgtgcagcac caggtgtccg agctgtggat gaagctgatg atccacgagc tcgccgccgc
     3001 gatcgagcac gtgaaggccg accagctggc gccctgcttc aagatcctgg cgcgggtgaa
     3061 gcagatccag cggcagctgt tcgagcaatg ggcggtgctc gagacgctga cgcccaacga
     3121 gtacctcgaa ttccgccacg tgctcggcc
//
LOCUS       DATIQC010000399         5095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_556572, whole genome shotgun sequence.
ACCESSION   DATIQC010000399 DATIQC010000000
VERSION     DATIQC010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5095
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_556572"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VLM17_08595"
     CDS             <1..227
                     /locus_tag="VLM17_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HSR65640.1"
                     /translation="LAREPVIGAGDLGLPPPAVAATTGAAATADEPDRADIEAALERN
                     GGIVAQAAADLGLSRQALYRRLERLGIRRD"
     gene            227..1543
                     /locus_tag="VLM17_08600"
     CDS             227..1543
                     /locus_tag="VLM17_08600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65641.1"
                     /translation="MRRLLPRYPLSLVFGALAAGYLLTGVALTAWLAPLLARAWMAPL
                     LVALVLLPLLAWHVQRAFAPMHSLFRALAGTVASYRDGDFAFGLSWPGGGELGELVDA
                     HNRLGDALREQRLALVQRELLLDTMVQHTPVAMLLIDPHQRVVYANLAARKLLGDGKR
                     LEGQAFDEVLARTPDALREAMQRGGDGMFSVGDADDEDIYHLARRHFRLNGRHHELIL
                     LRQLTAELRRQEVQTWKKVIRVISHELNNSLAPIASLAHSGAELLRRGQLERLPNALA
                     TIEDRARHLEGFIRDYARFAKLPAPRASSVPWSRFLAQLHAQVEFVAEGTIGEHAARF
                     DTAQMEQALLNLLKNAHESGSPAGEVRLVLRRLAEGWRIDVLDRGSGMNEAVLANALL
                     PFYSTKRHGTGLGLALAREIAEAHGGRIALLNREGGGLCVSLVLPD"
     gene            complement(1540..2064)
                     /locus_tag="VLM17_08605"
     CDS             complement(1540..2064)
                     /locus_tag="VLM17_08605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65642.1"
                     /translation="MVENFDAFMHSAVPYFAAVAQVGGAMLGLIFVAFTFNPKALGKR
                     ERNLAQQTFADLLMVLVTALALLLPSTPPKQVALATLAIALAGSVQMAWNLTLLLRST
                     PQARDARYLLRRYGVSLLGHAGLLAASVLFIGEGAAGATMRSLLLLSPLALLVAGSRS
                     AWMLVVRNAEGEDG"
     gene            complement(2073..3437)
                     /gene="glmU"
                     /locus_tag="VLM17_08610"
     CDS             complement(2073..3437)
                     /gene="glmU"
                     /locus_tag="VLM17_08610"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003476056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HSR65643.1"
                     /translation="MPGPLHVIVLAAGEGKRMKSTLPKVLQKIAGRPMLAHVLDTARA
                     LRPQGLHVVFGHGGDQVRAAFAGAGDLQWAEQARQLGTGHAVQQAMPGVPDGARVLVL
                     YGDVPLLQAETLQRLLDAPGRLAVLGAELPEPLGYGRIVRDAEGRVARIVEHKDADED
                     ERRIRLINTGVIAADANALRQWLDALRNDNAQGEYYLTDVFAMAAAEFDAAEIVAVAD
                     VIETEGANDPWQLAQLERAFQLRAVRTLCAQGVRVADPARIDIRGTVRAGRDVELDVD
                     LVLEGEVVLGDGVRVGPFCRLRDVALGAGTEVRAHCDLDGTRTEGAVQIGPFARLRPG
                     TVLADGVHVGNFVETKNARLGVGSKANHLTYLGDAVVGSGVNVGAGTITCNYDGANKS
                     TTTIADGAFIGSNTSLVAPVTIGQGATIGAGSVITRDAPEGELTIARARQATVEGWQR
                     PKKK"
     gene            3553..3933
                     /locus_tag="VLM17_08615"
     CDS             3553..3933
                     /locus_tag="VLM17_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HSR65644.1"
                     /translation="MSLSRHARHYLLIGALQWLVDWGVMVLLTHWIPVEPANIGGRVA
                     GALLGYRLNGRVTFAGEDTGTGGQQLFRYMVMWLSTTIISTWSMGAIDNGLGLQWARL
                     AKPAVEFALGIVGFVLSRHWVYKK"
     gene            complement(4021..4446)
                     /locus_tag="VLM17_08620"
     CDS             complement(4021..4446)
                     /locus_tag="VLM17_08620"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HSR65645.1"
                     /translation="MASTIRCDIVSAEAEIFHGEAELVVVTGELGELGIAPRHAPLIT
                     RLKPGKVVVTLPGGEQLDFAISGGILEVQPQVVTVLADTAIRAEDIDEAAVRAAKEEA
                     ERILAHRGEPMEIAEAQKRLAEVTAQLQALERLRKNLRH"
     gene            complement(4564..>5095)
                     /locus_tag="VLM17_08625"
     CDS             complement(4564..>5095)
                     /locus_tag="VLM17_08625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014504697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HSR65646.1"
                     /translation="KTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRNIASLG
                     IYPAVEPLDSTSRQLDPNVIGNEHYETARRVQSTLQKYKELKDIIAILGMDELSEEDK
                     QAVSRARKIERFFSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGEMDHLPEQAFYM
                     VGGIDEAIEKGKKVAA"
BASE COUNT          690 a         1829 c         1811 g          765 t
ORIGIN      
        1 tgctggcgcg cgaaccggtg atcggcgccg gtgatctcgg cctgccgccc ccggcggtcg
       61 cggccacgac cggcgcggcg gccacggccg acgagcccga tcgcgcggac atcgaggccg
      121 cgctcgaacg caacggcggg atcgtcgcgc aggcggccgc cgacctcggg ctgtcgcggc
      181 aggcgctgta ccgccggctc gagcggctcg gcatccgccg cgactgatgc gccgcctgct
      241 gccccgctat ccgttgagcc tggtcttcgg cgcgctcgcg gccggctacc tcctcaccgg
      301 ggtggcgctc accgcgtggc tggcgccgct gctggcgcgc gcgtggatgg cgccgctgct
      361 ggtcgcgctg gtgctgctgc cgctgctggc ctggcacgtg cagcgcgcat tcgcgccgat
      421 gcactcgctg ttccgcgcgc tggccggcac ggtcgcgagc taccgcgacg gcgacttcgc
      481 cttcggcctg tcgtggccgg gcggcggcga gctgggcgaa ctggtcgacg cgcacaaccg
      541 cctcggcgac gcgctgcgcg agcagcgcct ggcgctggtc cagcgcgaac tgctgctcga
      601 caccatggtc cagcacaccc cggtcgcgat gctgctcatc gatccgcacc agcgggtcgt
      661 gtacgccaac ctcgccgcgc gcaagctgct cggcgacggc aagcggctgg aagggcaggc
      721 cttcgacgag gtgctggccc gcacgccgga cgcgctgcgc gaggcgatgc agcgcggcgg
      781 cgacggcatg ttcagcgtcg gcgacgccga cgacgaggac atctaccacc tcgcccgccg
      841 ccacttccgc ctcaacggcc gccaccacga gctgatcctg ctgcgccagc tcaccgccga
      901 gctgcgccgg caggaagtgc agacctggaa gaaggtgatc cgcgtcatca gccacgagct
      961 caacaattcg ctcgccccga tcgcctcgct cgcgcactcg ggcgccgagc tcctgcgccg
     1021 cgggcaactg gagcggctgc cgaacgcgct ggcgacgatc gaggaccgcg cgcgccacct
     1081 cgagggcttc atccgcgatt acgcgcgctt cgccaagctg ccggcgccac gcgcctcgag
     1141 cgtgccctgg tcgcggttcc tcgcccagct gcatgcccag gtcgagttcg tcgccgaggg
     1201 cacgatcggc gagcacgccg cacgcttcga caccgcgcag atggaacagg cgctgctcaa
     1261 cctgctcaag aacgcgcatg aatcgggctc gccggccggc gaggtgcggc tggtgctgcg
     1321 ccggctcgcc gaaggctggc gaatcgacgt gctcgaccgc ggcagcggca tgaatgaggc
     1381 cgtgctcgcc aacgcactgc tgccgttcta ctcgaccaag cgccacggca ccggcctcgg
     1441 cctcgcgctg gcgcgggaga tcgccgaagc gcatggcggg cgcatcgccc tgctcaaccg
     1501 cgagggcgga gggctgtgcg tgagcctggt gctgccggac tagccgtctt ccccttccgc
     1561 gttgcgtacc accagcatcc acgcgctgcg gctgccggcc accagcaacg ccagcgggct
     1621 gagcagcagc agcgagcgca tcgtggcgcc ggccgcgcct tcgccgatga acagcacgct
     1681 cgcggccagc aggccggcgt ggccgagcag cgacacgccg tagcgccgca gcaggtagcg
     1741 ggcatcgcgc gcctgcggcg tggagcgcag caggagcgtc aggttccagg ccatctgcac
     1801 cgagccggcc agggcgatcg cgagggtcgc cagcgccacc tgcttgggcg gcgtgctcgg
     1861 cagcagcagc gcgagcgcgg tgaccagcac catgagcagg tcggcgaagg tctgctgggc
     1921 caggttgcgc tcgcgcttgc cgagcgcctt cggattgaag gtgaaggcga cgaagatcaa
     1981 accgagcatg gcgccgccga cctgggcgac ggcggcgaaa tagggaaccg ccgagtgcat
     2041 gaaggcatcg aagttctcca ccatcgccct cgctatttct tcttcggtcg ttgccagccc
     2101 tcgaccgtcg cctggcgcgc gcgcgcgatg gtgagctcgc cttccggggc gtcgcgggtg
     2161 atcaccgaac cggcgccgat ggtcgcgccc tgcccgatcg tcacgggcgc caccagcgac
     2221 gtgttcgagc cgatgaaggc accgtcggcg atcgtcgtgg tcgacttgtt cgcaccgtcg
     2281 tagttgcagg tgatggtgcc ggcgccgacg ttgaccccgc tgccgaccac ggcgtcgccg
     2341 aggtaggtga ggtggttggc cttgctgccg acgcccaggc gcgcgttctt ggtctcgacg
     2401 aagttgccga cgtgcacgcc gtcggccagc accgtcccgg ggcgcagccg ggcgaacggg
     2461 ccgatctgca ccgcgccttc ggtccgcgtc ccgtcgaggt cgcagtgcgc gcgcacctcg
     2521 gtgcccgcgc cgagcgcgac gtcgcgcagg cggcagaacg ggcccacgcg cacgccgtcg
     2581 ccgagcacga cctcgccttc gagcaccagg tcgacgtcga gttcgacgtc gcggccggcg
     2641 cgcaccgtgc cgcggatgtc gatccgcgcc ggatccgcca cccgcacgcc ctgcgcgcac
     2701 agcgtgcgca ccgcgcgcag ctggaaggcg cgctcgagct gggcgagctg ccagggatcg
     2761 ttggcgcctt cggtttcgat cacatcggcg acggcgacga tttccgccgc gtcgaactcg
     2821 gccgcggcca tcgcgaacac gtcggtcagg tagtactcgc cctgcgcgtt gtcgttgcgc
     2881 aacgcgtcca gccattgccg cagcgcgttg gcgtcggcgg cgatcacgcc ggtgttgatc
     2941 aggcggatcc ggcgctcgtc ctcgtcggca tccttgtgct cgacgatgcg cgcgacgcgg
     3001 ccttcggcgt cgcgcacgat ccgcccgtag ccgagcggct cgggcagctc cgcgccgagc
     3061 acggcgaggc ggccgggcgc atcgagcagg cgctgcaggg tctcggcctg cagcagcggc
     3121 acgtcgccgt acagcaccag cacccgcgcg ccgtcgggga cgcccggcat cgcctgctgc
     3181 acggcatgcc cggtgccgag ctggcgcgcc tgctcggccc actgcaggtc gccggctccg
     3241 gcgaaggcgg cgcgcacctg gtcgccacca tggccgaaca ccacgtgcag gccctgcggg
     3301 cgcagcgcgc gcgcggtgtc gagcacgtgc gcgagcatcg gccggccggc gatcttctgc
     3361 agtaccttcg gcagcgtcga cttcatgcgc ttgccttcgc cggcggcgag gacgatgacg
     3421 tgcaacggac cgggcatggc ggctccagcg gaaggcttgc cggaattcta ccggtggccg
     3481 ctgttacgat gcggcgtcct tccgcagcgg ccatgcgatg ccccgacccg ccccgaccca
     3541 cggacccgcc gcatgagcct gtcccggcat gcgcgtcact acctgctgat cggcgcgctg
     3601 caatggctgg tcgactgggg cgtgatggtg ctgctgacgc actggatccc ggtcgagccc
     3661 gcgaacatcg gcggccgcgt cgccggcgcc ctgctcggct accgcctcaa cggccgggtg
     3721 accttcgccg gcgaggacac cggcaccggt gggcagcagc tgttccgcta catggtgatg
     3781 tggctcagca ccacgatcat cagcacctgg tcgatgggcg cgatcgacaa cggcctcggc
     3841 ctgcagtggg cgcggctggc caagccggcg gtggagttcg cgctgggcat cgtcggcttc
     3901 gtgctgtcgc ggcactgggt gtacaagaag tagccgcccg gcatcgcgcg cctccatcgg
     3961 cgcaacaaaa aagcgacggc attgccgtcg ctttttttgt cccggccgcg gcccggcggg
     4021 tcagtggcgg aggttcttgc gcaggcgctc cagcgcctgc agctgcgcgg tgacctcggc
     4081 caggcgcttc tgcgcctcgg cgatctccat cggctcgccg cgatgggcga ggatgcgctc
     4141 ggcctcctcc ttcgccgcgc gcaccgccgc ctcgtcgatg tcctcggcgc ggatcgcggt
     4201 gtcggccagc acggtcacga cctgcggctg cacctcgagg atgccgccgg agatggcgaa
     4261 gtcgagctgc tcgccgcccg gcagggtgac gacgaccttg cccggcttga ggcgggtgat
     4321 cagcggcgcg tggcgcggcg cgatgcccag ctcgccgagt tcgccggtga cgacgaccag
     4381 ctccgcctcg ccgtggaaga tctcggcctc ggcgctgacg atgtcgcaac ggatggtgga
     4441 tgccatggtg aacgctctcg tgctcgtctc cctctcccgc ttgcgggaaa gggccggggt
     4501 gagggtgagc gggcgaacgc cctcacccct aagcctctcc cgcaagcggg agagggaacc
     4561 tcatcaggcg gcgaccttct tgcccttctc gatcgcctcg tcgatgccgc cgaccatgta
     4621 gaacgcctgc tccggcaggt ggtccatctc gccgtcgacg atcatcttga agccgcggat
     4681 cgtttccttc agcggcacgt acttgccggg cgagccggtg aagacttcgg ccacgtggaa
     4741 cggctgcgag aagaagcgct cgatcttgcg cgcgcgcgac acggcctgct tgtcctcttc
     4801 cgacagctcg tccatgccga ggatcgcgat gatgtccttc agctccttgt acttctggag
     4861 ggtggactgc acgcggcgcg cggtctcgta gtgctcgttg ccgatcacgt tcgggtcgag
     4921 ctggcgcgag gtcgagtcga gcggctcgac cgccgggtag atgcccagcg aggcgatgtt
     4981 gcgcgagagc acgacggtgg cgtcgaggtg ggcgaacgtc gtcgccggcg acgggtcggt
     5041 caggtcgtcc gcgggcacgt acacggcctg gatcgaggtg atcgagccgg tcttg
//
LOCUS       DATIQC010000400         4231 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_61320, whole genome shotgun sequence.
ACCESSION   DATIQC010000400 DATIQC010000000
VERSION     DATIQC010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4231
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61320"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(283..582)
                     /locus_tag="VLM17_08630"
     CDS             complement(283..582)
                     /locus_tag="VLM17_08630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65647.1"
                     /translation="MESWREELVTLKAQLAVQHMALRALVHSHPRPAKVLDEWRKLRA
                     DTVAAAYAPSTDVRDSEWLTEQVHSLAATWMAELASAVQRHAERHDVEAGPDALA"
     gene            complement(773..955)
                     /locus_tag="VLM17_08635"
     CDS             complement(773..955)
                     /locus_tag="VLM17_08635"
                     /inference="COORDINATES: protein motif:HMM:NF017353.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HSR65648.1"
                     /translation="MNHRLDGMAHEAKGTLKETIGKATDDRSQQLSGSAERHAGKAEQ
                     MVALLADRARRNDPRR"
     gene            1171..1575
                     /locus_tag="VLM17_08640"
     CDS             1171..1575
                     /locus_tag="VLM17_08640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65649.1"
                     /translation="MPGSPPRDVLLVDVVDGVPVVRLDAVTGFERAVALVADAIASAV
                     AQRLPHLLLDASRASFESPGIFARHRLARRWAEAADGQLRLAVVVRRDCIDPDHFGVI
                     AAGNFGLAGEVFEDESEAIAWLRAQEDAAGRD"
     gene            1643..2569
                     /locus_tag="VLM17_08645"
     CDS             1643..2569
                     /locus_tag="VLM17_08645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 family metallocarboxypeptidase"
                     /protein_id="HSR65650.1"
                     /translation="MSTQQTAYPIGQPGVPWGDAEKAEWRARQGVRRRYADDVLAAIE
                     PLRARFDVVEYGRLAYGADDYPLLAIRSRDRNDALPTVLVTGGVHGYETSGVHGALRF
                     VDAHAADYAGRANLLVVPCVSPWAYERIHRWNADAIDPNRSFRADSPAQESAALMRLV
                     APLRDVLVHVDLHETTDSDESEFRPALAAREGKPFEPEGIPDGFYLCADSANPQPAFQ
                     QAVIAAVARVTHIAPADEKGEIIGSPVVAPGVIEYAYRPLGLCAGVTDARYTTTTEVY
                     PDSPRATPEQCNAAQVAAVRAAIDYALAQRRD"
     gene            2698..3417
                     /locus_tag="VLM17_08650"
     CDS             2698..3417
                     /locus_tag="VLM17_08650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4386 domain-containing protein"
                     /protein_id="HSR65651.1"
                     /translation="MTTTSPQSYARFGGLLYLLIIAAGMFGELAVRGTLVVPGDAAAT
                     AARIAAAPGLWRSGIALDLLMHVCDVFVMWSIYVLLRVVHRNLALLVLLFNLVQTAVL
                     VANKLTLLVPVFLLGDAPYLHAFAPAQLQAWSYLAIRVHEHGFGIGLVFFGVVCLLEG
                     HLVRRSGFLPWLVGALMQLAGVCYLANSVALLVAPHVQAQLFPWIMLPCFVAELSFAG
                     WLLVKGVDAREWQRQAAAAAA"
     gene            complement(3440..>4231)
                     /locus_tag="VLM17_08655"
     CDS             complement(3440..>4231)
                     /locus_tag="VLM17_08655"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSR65652.1"
                     /translation="QDDIAPAPRPQPLEADPLVAPVVRSGRSLLAPGATADGEPVQAL
                     AVPLASGGRVIGALVVRSEGLALAWDDAERQRLEFVASQIAAACERSLHRRQLEYLAA
                     HDPLTGLPNRYRFQAELDAALASARERGECFALLYLDLDGFKAANDTCGHEGGDRLLL
                     DVAQRLRASLRQGDAVARLGGDEFVVLVRACRDADAARAIADKLRLTLGRPYQLGGHR
                     FDISASIGLAMYPDDGDSADALLRHGDRAMYAAKRAGGDRLSLAG"
BASE COUNT          498 a         1495 c         1584 g          654 t
ORIGIN      
        1 agtgcccgcg acctgctgcg agcggtcgtt ggtggccttg ccgacctgtt ccttgacggt
       61 gcccttgatc tcgtggcccg ctccttcgat tcgatggctc atggcgttct cccgctgggg
      121 ttcgcgacca ctttggcgcg agcggcgtag cgtccgggtg atcggcggcg cttacgattc
      181 aggttcaagg acgtcgtcgc gtcctccatc gaaccccgtt cgtcgccgac cgctcgttcg
      241 acgcacctgc gccggaccgg gtcgcggcgc agtcggagcg gctcacgcca gcgcgtcggg
      301 cccggcttcg acgtcgtgcc gttcggcatg ccgctggacc gcggaggcca gctcggccat
      361 ccaggtcgct gccagggaat gcacctgttc ggtcagccac tcgctgtcgc ggacgtcggt
      421 ggacggcgca taggcggcgg cgacggtgtc ggcgcgcagc ttgcgccact cgtccagcac
      481 cttggccggg cgcgggtggc tgtgcacgag ggcgcgcagg gccatgtgct ggacggccag
      541 ctgcgccttg agggtgacca gttcttctcg ccaggattcc atgtctcgct ccgcgacatc
      601 ggaaggtagg ggtggacaac ggacggtcag gtagggctgc ccggacgtgg tttcaagggg
      661 gctgcgggac ggccacggcg ccggcccggg aggccatggc ggggtgcacg cctgcccggc
      721 aaggaaacgc ccgcgttgcg cgggcgtttc tccatcgcgc ccggcgatgc gactagcgcc
      781 gcggatcatt ccggcgcgcg cggtcggcca gcagggcgac catctgctcg gccttgccgg
      841 cgtgccgttc ggcgctgccg gaaagctgct gcgatcggtc gtcggtcgcc ttgccgatgg
      901 tttccttgag ggtgcccttg gcttcgtggg ccatgccgtc gaggcgatga ttcatgcggt
      961 cctcctgcgt gggaagtgtt gcgtgggacc accttcccgg aagcggcgtt tgcccggggt
     1021 gagcggacgc gcggtcggtt cagcttcgaa tccatcggtg tgcgccaggg ctgagcgcga
     1081 gatgaagcgc gcctccacgt ctcccggcgt ggcccgcgcg tggcacggag ggcgttgcct
     1141 ccgatggggt ttcgttggcc gggtacgccg atgccaggtt cacccccccg tgatgtgctg
     1201 ctggtcgacg tcgtggacgg cgtgccggtg gtgcggctgg acgcggtcac cgggttcgag
     1261 cgcgccgtcg cgctggtcgc cgacgccatc gccagcgcgg tggcccagcg cctgccgcac
     1321 ctgctgctgg acgccagccg ggcgtccttc gagtcgccgg gcatcttcgc ccgccatcgc
     1381 ctggcccgtc gctgggccga agccgccgac gggcagctgc ggctcgccgt cgtggtgcgc
     1441 cgcgactgca tcgacccgga tcacttcggc gtgatcgccg ccggcaactt cggcctggcc
     1501 ggcgaggtgt tcgaggacga gtccgaggcg atcgcctggc tgcgcgcgca ggaggatgcg
     1561 gcgggacgcg attgaccgcg caggcgggcg gcgggccgcg gggcgctgct acagtgccgc
     1621 tttccttcgc gcaggagccg ccgtgagcac gcagcagacc gcctatccga tcggccagcc
     1681 gggcgtgccg tggggcgatg cggagaaggc cgaatggcgc gcgcggcagg gggtccggcg
     1741 gcgttatgcc gacgacgtgc tcgccgcgat cgagccgctg cgggcgcgct tcgatgtcgt
     1801 cgagtacggc cggctcgcgt acggcgccga cgactatccg ctgctcgcga tccgcagccg
     1861 cgaccggaac gacgcgctgc cgaccgtgct ggtcaccggc ggcgtgcacg gctacgagac
     1921 cagcggcgtg cacggcgcgc tgcggttcgt cgacgcgcac gccgcggact acgcgggccg
     1981 cgccaacctg ctggtcgtgc cctgcgtcag cccgtgggcc tacgagcgca tccaccgctg
     2041 gaacgcggac gcgatcgatc ccaaccgctc gttccgcgcc gacagccctg cgcaggaatc
     2101 ggccgcgctg atgcgcctgg tcgcgccgct gcgcgacgtc ctcgtccacg tcgacctgca
     2161 cgagaccacc gacagcgacg aatccgaatt ccgccccgcg ctcgccgcgc gcgaaggcaa
     2221 gcccttcgag ccggaaggca ttccggacgg cttctacctg tgcgccgaca gcgccaatcc
     2281 gcagccggcg ttccagcagg cggtgatcgc ggcggtggcc cgggtcaccc acatcgcgcc
     2341 ggcggacgag aagggcgaga tcatcggctc gccggtggtg gcgccgggcg tgatcgagta
     2401 cgcctaccgc ccgctcggcc tgtgcgccgg ggtgaccgac gcgcgctaca ccaccaccac
     2461 cgaggtctat cccgacagtc cgcgcgccac gcccgaacag tgcaacgccg cgcaggtggc
     2521 ggcggtgcgc gcggcgatcg actacgcgct ggcgcagcgc cgcgactgag gcgaccggcg
     2581 cccggccccg gcggcttcgc ggcgggcagt acgcggcgga ccgtcggagt gccgatcggc
     2641 ccgggccgcg cgctccgggc catgcgaagc tgcgccgcat ccgaccggaa gccgacgatg
     2701 accacgacct cgccgcagtc ctacgcccgc ttcggcggcc tgctgtacct gctgatcatc
     2761 gccgccggca tgttcggcga gcttgcggtg cgcggcacgc tggtggtgcc cggcgacgcc
     2821 gccgcgaccg cggcgcgcat cgccgccgcc cccgggctgt ggcggtcggg catcgcgctg
     2881 gacctgctga tgcacgtgtg cgacgtgttc gtgatgtggt cgatctacgt gctgctgcgg
     2941 gtggtgcacc gcaacctggc gctgctggtg ctgctgttca acctggtgca gacggcggtg
     3001 ctggtggcga acaagctgac cctgctggtg ccggtgttcc tgctcggcga cgcgccgtac
     3061 ctgcacgcgt tcgcgccggc gcagctgcag gcctggtcct acctcgccat ccgcgtgcac
     3121 gaacatggct tcggcatcgg cctggtcttc ttcggtgtcg tctgcctgct ggagggccat
     3181 ctggtccgcc gttcgggctt cctgccgtgg ctggtcggcg ccctgatgca gctggccggc
     3241 gtgtgctacc tcgccaacag cgtggcgctg ctggtcgctc cgcacgtcca ggcgcagttg
     3301 ttcccctgga tcatgctgcc gtgcttcgtc gccgagctgt cgttcgcggg ctggctgctg
     3361 gtgaagggcg tggacgcgcg cgaatggcag cggcaggcgg ccgccgcggc ggcgtaggcg
     3421 tcgcggtcgc ggcgctccgt cagccggcca gcgacagccg gtcgccgccc gcgcgcttgg
     3481 ccgcgtacat cgcgcggtcg ccatggcgca gcagggcgtc ggcgctgtcg ccatcgtccg
     3541 gatacatcgc caggccgatg ctggcgctga tgtcgaaccg gtgtccgccc agctggtatg
     3601 gccggccgag cgtcaggcgc agcttgtcgg cgatggcccg cgcggcgtcc gcatcgcggc
     3661 aggcgcgcac cagcacgacg aactcgtcgc cgcccaggcg cgcgaccgcg tcgccctggc
     3721 ggagcgacgc gcgcaggcgc tgggcgacgt cgagcagcag gcggtcgccg ccttcgtgcc
     3781 cgcaggtgtc gttggcggcc ttgaagccgt cgaggtcgag gtagagcagg gcgaagcatt
     3841 cgccgcgttc gcgcgccgac gcgagcgcgg cgtccagctc ggcctggaag cggtagcggt
     3901 tgggaaggcc ggtgagcggg tcgtgcgccg cgaggtattc gagctggcga cgatgcaggc
     3961 tgcgctcgca cgcggcggcg atctgcgacg cgacgaactc caggcgctgg cgctcggcgt
     4021 cgtcccaggc cagcgccagg ccctcgctgc gcacgaccag cgcgccgatc acgcgtccgc
     4081 cggaggcgag cggcacggcc agcgcctgca cgggttcgcc atcggcggtg gcgccggggg
     4141 ccagcagcga acgtccgctg cgcaccaccg gcgcgaccag cggatccgcc tccagcggct
     4201 gcgggcgcgg cgccggcgcg atgtcgtcct g
//
LOCUS       DATIQC010000401         1572 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_203367, whole genome shotgun sequence.
ACCESSION   DATIQC010000401 DATIQC010000000
VERSION     DATIQC010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203367"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VLM17_08660"
     CDS             complement(<1..353)
                     /locus_tag="VLM17_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase ligase N-terminal
                     domain-containing protein"
                     /protein_id="HSR65653.1"
                     /translation="MSLREYARKRKFGATPEPSGAAAAGRHGRRPIYVIQLHHARARH
                     YDFRLEMDGTLKSWAVPRGPSLRVGEKRLAVEVEDHPIGYADFEGDIPEGNYGAGHVD
                     IFDHGVWSSAGDPLEG"
     gene            complement(370..1317)
                     /locus_tag="VLM17_08665"
     CDS             complement(370..1317)
                     /locus_tag="VLM17_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HSR65654.1"
                     /translation="MPRPVWSGTLSFGLLNIPVSLMSGEKPSADISFRMLDGRNNAPV
                     KYERVNAETGEEVPWKDIVKAYEYEKGSFVVLEPEDIKSAAPESHDAIDVEGFVDAEA
                     IGPQYFEKPYVLVPQKKAEKGYVLLREALQKTGKIGIARVVIRTRESLCAVIPEDNAL
                     LLMMMRYPGELVDVHDYSIPEAAKGDFRITPKELAFSEQLIEAMSGDWQPEQYKDEFR
                     ARLQKVIKERMEAHGVVRRKAEAPEAEEGAATNVVDFMTLLQQSIANKNRTPAKKAAK
                     GHRDEGEEEARPAAKKTAKRATTRKPAKKAAKTSRRKSA"
BASE COUNT          184 a          548 c          535 g          305 t
ORIGIN      
        1 ccttcgagcg gatcgcccgc gctgctccac acgccgtggt cgaagatgtc gacgtggccc
       61 gcgccgtaat tgccttcggg gatgtcgcct tcgaagtccg cgtagccgat cgggtgatcc
      121 tcgacttcca ccgccagccg cttctcgccc acgcgcagcg acggcccgcg cggcaccgcc
      181 cagctcttga gcgtgccgtc catctcgagc cggaagtcgt agtggcgggc tcgcgcgtgg
      241 tgcagctgga tgacgtagat cgggcgccgg ccgtggcgcc cggccgcggc ggcgccggaa
      301 ggttccgggg tcgcgccgaa cttccgcttg cgggcgtatt cgcgcaggct caccggcgct
      361 ccccggccct caggcgctct tgcgccggct ggtcttggcg gccttcttcg ccggcttgcg
      421 ggtggtcgcg cgcttggcgg tcttcttcgc cgctggccgt gcttcctctt cgccttcgtc
      481 gcggtgcccc ttggccgcct tcttcgccgg cgtgcggttc ttgttggcga tgctctgctg
      541 gagcagggtc atgaagtcga ccacgttggt ggcggccccc tcctcggcct ccggcgcctc
      601 ggccttgcgg cggaccacgc cgtgcgcctc catgcgttcc ttgatcacct tctgcaggcg
      661 cgcgcggaac tcgtccttgt actgttccgg ctgccagtcg ccggacatgg cctcgatcag
      721 ctgctcggag aacgcgagct ccttcggcgt gatgcggaag tcgcccttgg ccgcttccgg
      781 aatgctgtag tcgtgcacgt ccacgagttc gccggggtag cgcatcatca tcagcagcag
      841 cgcgttgtcc tcgggaatga ccgcgcacag gctctcgcgg gtacggatga cgaccctggc
      901 gatcccgatc ttgccggtct tctgcagcgc ctcgcgcagc agcacgtagc ccttttccgc
      961 cttcttctgc ggcaccagca cgtagggctt ctcgaagtac tgcgggccga tcgcttcggc
     1021 atcgacgaag ccctcgacgt cgatcgcgtc atggctttcc ggcgccgccg acttgatgtc
     1081 ctccggctcg agcacgacga agctgccctt ctcgtactcg taggccttga cgatgtcctt
     1141 ccacggcact tcctcgccgg tttcggcgtt gacgcgctcg tacttcaccg gcgcgttgtt
     1201 gcggccgtcg agcatgcgga aggagatgtc ggcgctgggt ttctcgccgg acatcagcga
     1261 cacggggatg ttgagcagtc cgaacgagag cgttccggac cagacggggc gtggcatgcc
     1321 ggttctcctc tggcgccgcg gcgcctggca gcgccgcgcc tgcgaagaac cagtatcccg
     1381 gcaggccgtg atgcggccgt ggagtgcgac cgccggaaaa agcgaacgcc gccctgcggc
     1441 ggcgtcggcg tgcatcgcgt gggggatgcg gttcaggcgg cgcggtcgca caccggcatg
     1501 tcgtcgcaca ggcggctggc gcattcgagc gtggccgcct gccacgcggc gtgggcgtcg
     1561 tggcgcacgt cg
//
LOCUS       DATIQC010000402         2157 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_591912, whole genome shotgun sequence.
ACCESSION   DATIQC010000402 DATIQC010000000
VERSION     DATIQC010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_591912"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            4..1065
                     /gene="murG"
                     /locus_tag="VLM17_08670"
     CDS             4..1065
                     /gene="murG"
                     /locus_tag="VLM17_08670"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HSR65655.1"
                     /translation="MILAGGTGGHIFPGLAVAHALRARGATVSWLGADGAMETRLVPQ
                     HGIPLDTIAVRGLRGKGVATLLGAPLRVLAAVRAAGRVLRARRPKVVVSFGGYAAGPG
                     GLAAKLRGIPLVVHEQNRAPGMTNRVLARFARAVLTGFPQTFAGAREQVAGNPVRSEI
                     AQLAPPAQRFAQRAGALRLLVLGGSQGARALNESVPRALAALKGHVEVRHQCGEKLRE
                     GAEQAYVQAGVAASVEPFIADMAQAYAWADLVVCRAGALTLAEVCAAGVGSVLVPFPQ
                     AVDDHQTRNAEYLVDHGAAVLLPQGDTLAEELRATMAALAADPARRLQMAEAARALAK
                     PDAAGRVADVVLAIAEGRA"
     gene            1062..>2157
                     /gene="murC"
                     /locus_tag="VLM17_08675"
     CDS             1062..>2157
                     /gene="murC"
                     /locus_tag="VLM17_08675"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011260229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HSR65656.1"
                     /translation="MSAQRLLDLVQADVARTGADGRPARVHFVGIGGVGMSGIAEVLC
                     TLGYQVSGSDNADNATTRRLASLGSTVHRGHAAAPVHGADCIVVSSAIRRDNPELMEA
                     RALRIPIVPRAEMLAELMRFRRGIAIAGTHGKTTTTSLTASVLGEGGLDPTFVIGGQL
                     LAAGANARLGGGDWLVAEADESDGSFLRLNPLVAVVTNIDADHLENYGGDFARVQAAF
                     SEFLHRLPFYGLAVLCLDDPEVAALAAETPRHLMTYGFHVDADVRADDVQQEGGCMRF
                     TLCLPDGSRTPVQLALPGRHNVQNALAAAAIGWQLGVDPMMIAEALRKFAGIGRRFNL
                     LARVTTARGANVQLVDDYGHHPKELEAVFAA"
BASE COUNT          268 a          808 c          801 g          280 t
ORIGIN      
        1 gtgatgatcc tcgccggcgg caccggcggc cacatcttcc ccggcctcgc ggtcgcgcat
       61 gcgctgcgcg cgcgtggcgc gacggtgagc tggctgggcg ccgacggcgc gatggaaacg
      121 cggctggtgc cgcagcatgg cattccgctc gacaccatcg cggtgcgggg cttgcgcggc
      181 aagggcgtgg ccacgctgct cggtgcgccg ctgcgcgtgc tggcggcggt gcgcgcggcg
      241 gggcgcgtct tgcgcgcgcg ccggccgaag gtggtggtga gcttcggtgg ctacgccgcg
      301 ggcccgggtg gcctggccgc gaagctgcgc ggcatcccgc tggtggtgca cgagcagaac
      361 cgcgcgccgg gcatgaccaa ccgcgtgctc gcgcggttcg cacgcgcggt gctgaccggc
      421 tttccgcaga ccttcgccgg cgcccgcgaa caggtggcgg gcaacccggt gcgcagcgag
      481 atcgcgcagc tggcgccgcc ggcgcagcgc ttcgcccagc gcgccggcgc gctgcgcctg
      541 ctggtgctcg gcggcagcca gggcgcgcgc gccctcaacg aatcggtgcc gcgcgcgctc
      601 gccgcgctca agggccacgt cgaagtgcgc caccagtgcg gcgagaagct gcgcgagggc
      661 gccgagcagg cgtacgtgca ggcaggcgtc gccgcgtcgg tcgaaccctt catcgccgac
      721 atggcgcagg cctatgcctg ggcggacctc gtcgtctgcc gcgccggcgc gctgacgctg
      781 gcggaagtgt gcgcggcggg ggtgggcagc gtgctggtgc cgttcccgca ggcggtcgac
      841 gaccaccaga cgcgcaacgc cgaatacctc gtcgaccacg gcgcggccgt gctgctgccg
      901 cagggcgaca ccctcgccga ggaactgcgc gcgacgatgg ccgcgctcgc cgccgatccc
      961 gcccgccgcc tgcagatggc cgaagccgcg cgtgcgctgg ccaagcccga tgccgccggc
     1021 cgcgtcgccg acgtcgtgct ggccatcgcg gagggccgcg catgagcgcg cagcgcctgc
     1081 tcgacctcgt ccaggcggac gtcgcccgca ccggcgccga cggccgcccc gcgcgcgtgc
     1141 acttcgtcgg catcggcggc gtgggcatga gcggcattgc cgaggtgctg tgcacgctcg
     1201 gctaccaggt gtcgggttcg gacaacgccg acaacgcgac cacgcgccgc ctcgcgtcgc
     1261 tcggctccac ggtgcatcgc ggccatgccg cggcgcccgt gcacggcgcc gactgcatcg
     1321 tggtgtcgag tgcgatccgg cgcgacaacc cggagctgat ggaagcgcgc gcgctgcgca
     1381 tcccgatcgt gccgcgcgcc gagatgctgg ccgagctgat gcgcttccgc cgcgggatcg
     1441 cgatcgccgg cacccacggc aagaccacca ccacctcgct caccgccagc gtgctcggcg
     1501 agggtggcct cgaccccacc ttcgtgatcg gcggccagct gctcgcggcc ggcgccaacg
     1561 cgcgcctggg cggcggcgac tggctggtgg cggaagccga cgagagcgac ggcagcttcc
     1621 tgcgcctcaa cccgctggtc gccgtcgtca ccaacatcga cgccgaccac ctcgagaact
     1681 acggcggcga cttcgcccgc gtgcaggcgg cgttctccga attcctgcac cgcctgccgt
     1741 tctacggcct ggccgtgctg tgcctcgacg acccggaggt cgccgcgctc gccgccgaga
     1801 cgccgcgcca cctgatgacc tacggcttcc acgtggacgc cgacgtgcgc gccgacgacg
     1861 tgcagcagga gggcggctgc atgcgcttca cgctgtgcct tccggatggc tcgcgcacgc
     1921 cggtgcaact cgcgctgccg ggccggcaca acgtgcagaa cgcgctggcc gcggcggcga
     1981 tcgggtggca gctcggcgtc gacccgatga tgatcgcgga ggcgctgcgc aagttcgccg
     2041 gcatcggccg ccgcttcaac ctgctggcgc gcgtgaccac cgccaggggc gccaacgtgc
     2101 agctggtcga cgattacggc caccatccca aggaactgga ggcggtgttc gccgccg
//
LOCUS       DATIQC010000403         2402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_520788, whole genome shotgun sequence.
ACCESSION   DATIQC010000403 DATIQC010000000
VERSION     DATIQC010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520788"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..673)
                     /locus_tag="VLM17_08680"
     CDS             complement(<1..673)
                     /locus_tag="VLM17_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020852046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HSR65657.1"
                     /translation="MTQTITVIRGDGIGPEIMEATLQVLDALQVGLSYEFADAGLAAL
                     EKHGELLPAATLESIRRNRVALKSPLTTPVGEGFSSINVELRKRFDLYANVRPAQSFP
                     NTRSRFPTGVDLVTVRENTEGAYSAEGQSVSEDGETAVSVTKTTRRGSERIVRYAFEL
                     ARRTGRRKVTVVHKANILKSTSGLFLKTARAVAAEYPDIQCNEMIVDNCCMQLVMRPE
                     QFDVIV"
     gene            complement(795..1214)
                     /locus_tag="VLM17_08685"
     CDS             complement(795..1214)
                     /locus_tag="VLM17_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005998182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HSR65658.1"
                     /translation="MSGDAQDDGAADSRVRQFTEFRKRMNERILAEPNQVVRRFFALD
                     TQTYQPGALDVKTKELLGLVASLVLRCDDCISYHVAQCQEAGVDRDEMFEAFSVGLVV
                     GGSIVIPHLRRAVAFLDELGRDPLEPGAGAPAAHEHG"
     gene            complement(1211..1486)
                     /gene="grxC"
                     /locus_tag="VLM17_08690"
     CDS             complement(1211..1486)
                     /gene="grxC"
                     /locus_tag="VLM17_08690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HSR65659.1"
                     /translation="MSSSHPPITLYTSAMCGYCVAAKNFLKSKGLAWDEIRVDTHPDE
                     RARMVTRTGRTTVPQIFVGATHVGGYDDMMALHRAGRFEPLLAGAGA"
     gene            1667..>2402
                     /locus_tag="VLM17_08695"
     CDS             1667..>2402
                     /locus_tag="VLM17_08695"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HSR65660.1"
                     /translation="MRLLLPTLLTLALATVLAPRASAQDARLPDIGSSAGSVLSPAQQ
                     RQYGEMTQSQLRNYGYTLDDPLVGGWLQSLGTRLGAASDKPDQQFNLFLLRDRQVNAF
                     ATLGGYVAVNSGLILAADKEDEVAAVLSHEIAHVTQSHVLRAVERAQRDSVPILLAML
                     GAIALSQASHSSSGDNAAMAALASAQGLMAQRQLDYSRGNEAEADRIGIRTLARAGYD
                     PEAMADFFEKLQSVVRANQGGERERTP"
BASE COUNT          351 a          836 c          839 g          376 t
ORIGIN      
        1 tgacgatcac gtcgaactgc tcggggcgca tcaccagctg catgcagcag ttgtcgacga
       61 tcatctcgtt gcactggatg tcgggatatt ccgctgcgac cgcgcgcgcg gtcttgagga
      121 acaggcccga ggtcgacttc aggatgttgg ccttgtgcac caccgtgacc ttcctgcggc
      181 cggtgcggcg ggccagttcg aaggcgtaac ggacgatgcg ttccgagcca cggcgcgtgg
      241 tcttcgtcac ggacaccgcg gtctcgccat cttcgctgac cgactgcccc tcggcgctgt
      301 aggcgccctc ggtgttctcg cgcacggtga ccaggtcgac gcccgtcggg aagcgcgatc
      361 gcgtgttcgg gaacgactgc gccggacgca cgttggcgta caggtcgaag cgcttgcgca
      421 gttcgacgtt gatcgatgag aagccctcgc cgaccggcgt ggtcagcggg ctcttgaggg
      481 cgacgcggtt gcggcggatc gactccagcg tcgccgcggg cagcagctcg ccgtgcttct
      541 cgagcgcggc gaggccggcg tcggcgaact cgtaggacag gccgacctgc agcgcatcga
      601 gcacctgcag ggtcgcttcc atgatctcgg ggccgatgcc atcgccgcgg atgacggtga
      661 tcgtttgggt cattgttgga attgccggcg tggggaagcc gcgcgtccgg cgcgcggcgg
      721 gggaaaaagc gagcgcgaat tatgccagag cggccgggcc ggcccctgac atggatcagg
      781 tccggcgggg caggtcagcc gtgttcgtgc gcggccggcg cgccggcgcc cggttccagc
      841 ggatcgcgtc ccagttcgtc caggaacgcg accgcgcggc gcaggtgcgg gatcacgatc
      901 gagccgccga ccaccaggcc caccgagaac gcctcgaaca tctcgtcccg gtccaccccc
      961 gcttcctggc actgggcgac gtggtaactg atgcagtcgt cgcagcggag caccagcgag
     1021 gcgaccaggc ccagcagctc cttggtcttc acgtcgagcg cgccgggctg gtaggtctgg
     1081 gtgtcgagcg cgaagaagcg gcgcacgacc tggttgggct cggccaggat gcgctcgttc
     1141 atgcgcttgc ggaattcggt gaactggcgg acgcggctgt cggcggcacc gtcgtcctgc
     1201 gcgtcgccgc tcatgcgccg gctcctgcca gcagcggctc gaagcggccg gcgcggtgca
     1261 gcgccatcat gtcgtcgtag ccgccgacgt gggtggcgcc cacgaagatc tgcggcacgg
     1321 tggtccggcc ggtgcgcgtg accatgcggg cgcgctcgtc cggatgcgtg tcgacccgga
     1381 tctcgtccca ggcgagcccc ttgctcttga ggaagttctt ggccgccacg cagtacccgc
     1441 acatggcgga ggtgtagagg gtgatcggag gatggctgga ggacatgggg gctcccggga
     1501 gttgcgcagc ggaaacttgc gacaggcctt attgtccgac atccggtccg gacgcgcgcc
     1561 gtcgccgacg gaacgcagcg tgaccgtacg cccgggttaa cccccgattc actccctgcc
     1621 gccgaccacc gctcatgctc ccgccagctt cgtgcacgcc atcgccatgc gccttctcct
     1681 gccgaccctg ctgacgctcg cgctcgccac cgtgctggcg ccgcgggcat ccgcgcagga
     1741 cgcccgcctg cccgacatcg gctcctccgc cggctccgtg ctctcgcccg cgcagcagcg
     1801 ccagtacggc gagatgaccc agagccagct gcgcaactac ggctacacgc tggacgaccc
     1861 gctggtcggc ggctggctgc agtcgctcgg cacgcgcctg ggcgcggcca gcgacaagcc
     1921 cgaccagcag ttcaacctct tcctgctgcg tgaccgccag gtcaatgcct tcgccaccct
     1981 cggcggctac gtcgcggtca actccggcct gatcctcgcc gccgacaagg aagacgaggt
     2041 ggccgcggtg ctttcgcacg agatcgccca cgtcacccag tcgcacgtgc tgcgcgcggt
     2101 cgagcgggcc cagcgcgaca gcgtgccgat cctgctggcg atgctgggcg cgatcgcgct
     2161 gtcgcaggcg tcgcacagct cctccggcga caacgcggcg atggccgcgc tggcttcggc
     2221 gcagggattg atggcgcagc gccagctcga ctactcgcgc ggcaacgaag ccgaagccga
     2281 ccgcatcggc atccgcaccc tcgcgcgtgc cggctacgac ccggaagcga tggccgactt
     2341 cttcgagaaa ctgcagtcgg tggtgcgcgc caaccagggc ggcgagcgcg agcgcacgcc
     2401 gg
//
LOCUS       DATIQC010000404         1692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_344213, whole genome shotgun sequence.
ACCESSION   DATIQC010000404 DATIQC010000000
VERSION     DATIQC010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344213"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..826)
                     /locus_tag="VLM17_08700"
     CDS             complement(<1..826)
                     /locus_tag="VLM17_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005411230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HSR65661.1"
                     /translation="MERWWRRGIAALLACAGVVGSAQAVDEKDLLPVDQAFALGASAP
                     ARGHVQLQWKIADGYYLYRHRIAVQATDGTPLGTLQLPAGDRHTDPFFGEVETYRHLL
                     QGSLPLQATGRQVTLQVKYQGCADAGVCYPPQKRVLTVALPAGAAGAPAPASAGAGTA
                     DGLAGLAHSLGGAPAAGPLPGARTGATDATPLPPDQAFGFEAIAGDGNTLLLRFSPAK
                     GYYLYRDKTTLRLQGGDGLALGAPRWPPGQRHRDEHFGDVIVYFDQVDVPVPLARTR"
     gene            complement(832..1164)
                     /gene="cutA"
                     /locus_tag="VLM17_08705"
     CDS             complement(832..1164)
                     /gene="cutA"
                     /locus_tag="VLM17_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005997572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HSR65662.1"
                     /translation="MAVIVCFCTCPDADSAARLAETLVDERLAACVQVLPGVRSVYRW
                     QGAVERADEVLLLIKTTHARLDALAERVRALHPYELPELVAVEAAGGLPAYLDWVAAE
                     SRTPGVGA"
     gene            complement(1275..>1692)
                     /locus_tag="VLM17_08710"
     CDS             complement(1275..>1692)
                     /locus_tag="VLM17_08710"
                     /inference="COORDINATES: protein motif:HMM:NF024907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VCBS repeat-containing protein"
                     /protein_id="HSR65663.1"
                     /translation="VGDGLADILWRNATTGDNVIWRSGSPTHQQAVSPLALEWQVAGI
                     GDFDGDGRSDILWHKPSTGGNAIWLSADSGTPRAMAAIATTWTVGAVGDYDMDTRSDV
                     LFRNTYTGANVYWRAADATGNVPLHSASVPDWVPVH"
BASE COUNT          235 a          628 c          603 g          226 t
ORIGIN      
        1 cacgcgtgcg cgcgagcggc accggcacgt ccacctggtc gaagtagacg atgacgtcgc
       61 cgaaatgttc gtcgcgatgg cgttgccccg gcggccagcg cggcgcgccg agcgcgaggc
      121 cgtcgccgcc ctgcagccgc agcgtcgtct tgtcgcgata gaggtagtag cccttggcgg
      181 gactgaagcg cagcagcagg gtgttgccgt caccggcgat cgcttcgaag ccgaatgcct
      241 ggtcgggcgg cagcggcgtt gcatcggtgg cgccagtccg cgcgcccggc agcggcccgg
      301 ccgcgggcgc gccgccgagc gagtgcgcca gtcccgccag gccgtcggcg gtgcccgccc
      361 ccgcgctcgc gggggccggc gcaccagccg caccggccgg cagcgccacc gtcagcaccc
      421 gcttctgcgg cggatagcac acgcccgcgt ccgcgcagcc ctggtacttc acctgcagcg
      481 tgacctggcg cccggttgcc tgcagcggca acgacccctg cagcaggtgg cggtaggttt
      541 cgacttcgcc gaagaacgga tcggtgtggc ggtcgccggc cggcagctgc agggtgccga
      601 gcggcgtgcc gtcggtcgcc tgcacggcga tccggtggcg atagaggtag tagccgtcgg
      661 cgatcttcca ttgcagctgc acgtgcccgc gcgccggcgc actcgcgccc agcgcgaacg
      721 cctggtcgac cggcagcagg tccttctcgt cgaccgcctg cgcactgccg acgacgccgg
      781 cgcatgccag caaggccgcg atgccgcggc gccaccacct ttccatccgc ttcatgctcc
      841 gacgccgggc gtgcggctct ccgccgccac ccagtccagg taggccggca ggccgccggc
      901 ggcttcgacc gccacgagct ccggcagttc atacgggtgc agcgcgcgca cccgctcggc
      961 gagcgcgtcc aggcgcgcgt gcgtggtctt gatcaacagc agcacctcgt ccgcgcgctc
     1021 gaccgcgcct tgccagcggt acaccgagcg cacgcccggc aggacctgca cgcaggccgc
     1081 cagccgctcg tccaccagcg tctccgccag gcgcgcggcg ctgtcggcgt cgggacacgt
     1141 gcagaaacag acgatgacgg ccatggaaac ccgggcaggc agcgacatag cctaccagcc
     1201 gggcccggcc tccccggatc gccccggcga ccgctcgggc gaagccgggg tgcacgcaat
     1261 agtcaatgca ccggtcagtg caccggcacc cagtcgggaa cgctcgcgct gtgcaggggc
     1321 acgttgccgg tcgcgtcggc ggctcgccaa tagacgttgg cgccggtgta ggtgttgcgg
     1381 aacaggacgt ccgaacgggt atccatgtcg taatccccga ccgcccccac cgtccacgtg
     1441 gtggcgatgg ccgccatggc gcgcggcgtg ccggaatcgg ccgacagcca gatcgcgttg
     1501 ccgcccgtcg agggcttgtg ccagaggatg tcggaacgcc cgtcgccgtc gaagtcgccg
     1561 atgccggcca cctgccactc gagtgccagg gggctgaccg cctgctggtg ggtcggactg
     1621 cccgagcgcc agatcacgtt gtcgccggtc gtggcgttgc gccagaggat gtcggccaag
     1681 ccgtcgccga cg
//
LOCUS       DATIQC010000405         5052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_26635, whole genome shotgun sequence.
ACCESSION   DATIQC010000405 DATIQC010000000
VERSION     DATIQC010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5052
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26635"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            339..1061
                     /locus_tag="VLM17_08715"
     CDS             339..1061
                     /locus_tag="VLM17_08715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65664.1"
                     /translation="MNAKPLLLSVALSLALSSLPAFAQDTAGDKQAVAEATVPASRLA
                     DRYADLAGSDQAATDLVHDLRTGGDFTVTETVTTTNPDGTTTTSTVDKTIANPNGPMG
                     YGEINITLAMAQKLVDSGAYADLQSALTGTTTTTTNADGTTTTTTSGGILAMRADGMG
                     WGQIAKSLGLNLGALVSASNHGGKTTGAQHANDHANAGDHPAKPDHPAKPDRPTRPDK
                     PERPSRPDKPELPQKPERPGHS"
     gene            1132..1926
                     /locus_tag="VLM17_08720"
     CDS             1132..1926
                     /locus_tag="VLM17_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019465989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HSR65665.1"
                     /translation="MKRIATGCALLLVLGGARAADGLSLGVGVDYSSGDYGTGTTTDI
                     LSVPFTAKYASGNWSWKASLPWMRVSGNANVVPGLGEVTNSNPRGRGRGNGGGTPTAT
                     DTGTASGVGDLRLAGTYSFDTGTPLGIDLTANAKIATADENKGLGTGANDYGLAVDLY
                     RAFGRTTVFGGAGYTVLGKSDYIDVNGVANANVGASWKLERGDSVGAMYEWRQAAATG
                     ASQRSELTGFYTLGAGEGGKLQLYATAGLSDGSPAWGGGVSYTHAF"
     gene            2108..2983
                     /locus_tag="VLM17_08725"
     CDS             2108..2983
                     /locus_tag="VLM17_08725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HSR65666.1"
                     /translation="MPPHALRAMATMLVAVATFSLMDAGLKALAAHYPPFEVAALRGA
                     ASLPWVLGWVLSSAGLRSLRPVQWWLHLLRAAMGIAMMAAFVYALRTLPLANAYSIFF
                     VAPLLITALSGPLLGERVGPRRWLAIAIGLAGVLVLLRPSGDGLLSAAALAVLLAALM
                     YAVSAITVRWLARTDSNQAMVVWLLALMALGAGVLAWPHWVPLRTEHLWLVAGVGVAG
                     AVGQYAITDAFRRGEASLLAPLEYTALVWGVLLDLSLWHTLPDGTTWLGAAIIVASGL
                     YLLRRERVHVEAEHP"
     gene            3060..3866
                     /locus_tag="VLM17_08730"
     CDS             3060..3866
                     /locus_tag="VLM17_08730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65667.1"
                     /translation="MQTQPRLPLVLLGLAFVSLVSGAAARRPTVDQIVEATSADRVLT
                     HAAPPRHAAGKSSAPTDAEVGDSDSFGRNVRWLGLAAGQVNLTTGTCDPASPDPCQVL
                     APPGRFAFSDIARIQLPAGATHSLLCYWFSPLLAITYDNPTAATQLALVQYTPTVTVE
                     NPVLDDPALVDPTTGAPFGGHLLTSMTSSQRINTPLPAGVNYTDVTRLSSVCIAGLLS
                     RKQLAESFGLSPSQVDAFFHNPTTLRLNVSGTLRYVSDAQLYFGLRVVGD"
     gene            complement(4055..4801)
                     /locus_tag="VLM17_08735"
                     /pseudo
     CDS             complement(4055..4801)
                     /locus_tag="VLM17_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008577537.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase family
                     protein"
     gene            complement(4847..5023)
                     /locus_tag="VLM17_08740"
     CDS             complement(4847..5023)
                     /locus_tag="VLM17_08740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65668.1"
                     /translation="MVHLHREIAMRCLHHVFLRGGIALLLIASAGVGAWSLPAPPCHV
                     AQAAMHAAAAPARC"
BASE COUNT          683 a         1878 c         1761 g          730 t
ORIGIN      
        1 cgggtggcgg cgagcgctac gtccggcggc ggcgcgctca tcgtggcgag gccggcgccg
       61 cgggcagcgg gagtgcgggg gacatgggtg gcgcgacggg gaaggagcgc cattgtgcgc
      121 gcaacagcgc ggcgcgagcc cgcccggccg cggtcgcggc gtaccggcgg cggcgcaagc
      181 gtgcgcgcgg tcacgggaaa tgcgacgcat cggaattggc gctgaacacg ccacgccgtt
      241 gaaccgccgc tcgccggtcg ccgcaggcag catgcgtgcg gccgcttccc ccggcggcgt
      301 gccgttccga tccaaccgct ccatccacaa ggactgccat gaacgcgaaa cccctgttgc
      361 tttccgtggc cctctcgctc gccctctcca gcctgccggc cttcgcccag gacaccgccg
      421 gcgacaagca ggcggtggcc gaagccaccg tgccggccag ccggctcgcc gatcgctatg
      481 ccgacctcgc cggctccgac caggcggcga ccgacctggt ccacgacctg cgcaccggcg
      541 gcgacttcac cgtcaccgaa accgtcacca ccaccaatcc ggatggcacc accacgacca
      601 gcacggtcga caagacgatc gccaatccca acggcccgat gggctacggc gagatcaaca
      661 tcaccctcgc gatggcgcag aagctggtcg actccggtgc gtacgccgac ctgcagtcgg
      721 ccctgacggg cacgaccacc accacgacca acgccgatgg caccaccacg acgacgacca
      781 gcggcggcat cctcgccatg cgcgccgacg gcatgggctg gggccagatc gccaagtcgc
      841 tcgggctcaa cctgggcgcg ctggtgagcg cgtccaacca cggcggcaag accaccggcg
      901 cgcagcatgc caacgaccat gcgaacgcag gcgaccaccc ggccaagccc gaccatccgg
      961 ccaagcccga tcgtccgacc cgtcccgaca agccggagcg cccgagccgc cccgacaagc
     1021 cggagctgcc gcagaagccc gagcgcccgg gccattcctg agccggcacc ggctccgcac
     1081 cccggcgggc gccctgcagc gcccgccatc cgcattcccc caggagattc gatgaaacgc
     1141 attgcaaccg gctgcgcgct gctgctcgtc ctcggcggcg cccgcgccgc cgacggcctg
     1201 tccctcggcg tcggcgtgga ctacagcagc ggcgattacg gcaccggcac caccaccgac
     1261 atcctgtcgg tccccttcac cgccaagtac gccagcggca actggagctg gaaggcgtcg
     1321 ctgccgtgga tgcgggtgtc cggcaatgcc aacgtcgtgc ctggcctcgg cgaggtgacc
     1381 aacagcaacc cgcgcggccg aggccgcggc aacggcggcg gcacgccgac cgccaccgac
     1441 accggcaccg cgtccggcgt cggcgacctg cgcctggcgg gcacctacag cttcgacacc
     1501 ggcacgccgt tgggcatcga cctcaccgcc aacgccaaga tcgccaccgc cgacgagaac
     1561 aagggcctgg gcacgggcgc gaacgattac ggcctcgcgg tcgacctgta ccgcgcgttc
     1621 ggccgcacca ccgtgttcgg tggcgccggc tatacggtgc tgggcaagtc ggactacatc
     1681 gacgtcaacg gcgtggcgaa cgccaacgtc ggcgcgagct ggaagctcga gcgcggcgac
     1741 agcgtcgggg cgatgtacga atggcggcaa gcggcggcga ccggcgccag ccagcgcagc
     1801 gaactgaccg gcttctacac gctgggcgcg ggcgagggcg gcaagctgca gctgtacgcc
     1861 accgccggcc tgtccgacgg cagccccgcg tggggcggcg gcgtgagcta cacgcacgcg
     1921 ttctgagcgg accgcgcggc ctgcgcgcgc aaacggggtg cctgccggcg ccccgttttt
     1981 ttttggcggg ttgcgcgcgc gcctgcgaac cggcaccgtg gcctgccacc ttccgcgccg
     2041 tgccgatgcc gcgtcgcctg ccccgccttc cggtccctgc ctcgcgcgcg gcgacgccat
     2101 gagcggcatg ccgcctcacg cgctgcgggc gatggcgacc atgctcgtcg ccgtcgccac
     2161 cttctcgctg atggacgccg ggctgaaggc gctggcggcg cactacccgc cgttcgaggt
     2221 ggccgcgctg cgcggcgcgg cgtcgctgcc gtgggtgctg ggctgggtgc tgtcgagcgc
     2281 gggactgcgc tcgctgcggc cggtgcagtg gtggttgcac ctgctgcgcg cggcgatggg
     2341 catcgcgatg atggcggcgt tcgtgtacgc gctgcgcacg ctgccactgg cgaacgccta
     2401 ctcgatcttc ttcgtcgcgc cgctgctgat caccgccctg tccgggccgc tgctcggcga
     2461 gcgcgtcggg ccgcggcgct ggctggcgat cgcgatcggc ctggccggcg tgctggtgct
     2521 gctgcggccg agcggcgacg ggctgctcag cgccgccgcg ctggccgtcc tgctggcggc
     2581 gctgatgtac gcggtgagcg cgatcaccgt gcgctggctg gcgcgcaccg acagcaacca
     2641 ggcgatggtg gtgtggctgc tggcgctgat ggcgctcggc gccggcgtgc tggcctggcc
     2701 gcactgggtg cccttgcgca cggaacacct gtggctggtc gccggcgtcg gcgtcgccgg
     2761 cgcggtcggc cagtacgcga tcaccgacgc gttccgccgc ggggaggcct cgctgctggc
     2821 gccgctggaa tacacggcgc tggtgtgggg cgtgctgctc gacctctcgc tctggcacac
     2881 gctgccggat ggcacgacgt ggctgggcgc ggcgatcatc gtcgcgagcg ggttgtacct
     2941 gctgcggcgc gagcgggtgc acgtggaggc ggagcatccc tagcgccgtg tccgccaggg
     3001 ccgggattcg gcgttgggag ccaaggttgt ctccgtccac gcaaaaggaa ccttgctcca
     3061 tgcagacgca gccccgtctt ccgctcgttc ttctcggact cgccttcgtt tccctggttt
     3121 ccggcgcggc ggcgcgccgc ccgacggtcg accagatcgt cgaagccacc tccgccgatc
     3181 gtgtcctgac ccatgccgcg cccccgcgcc acgccgccgg caagagcagt gcgccgaccg
     3241 acgccgaggt cggcgacagc gattcgttcg gacgcaacgt ccgctggctc ggcctcgcgg
     3301 ccggccaggt caacctcacc acgggcacat gcgacccggc gtcgcccgat ccgtgccagg
     3361 tgctcgcgcc cccgggccga ttcgccttct ccgatatcgc ccgcatccag ctgcccgccg
     3421 gcgcgacgca ttcgctgctg tgctactggt tctcgccgct gctggcgatc acctacgaca
     3481 atcccaccgc cgcgacccag ttggcactgg tccagtacac gcccacggtg accgtcgaaa
     3541 atccggtgct ggacgatccg gcgctggtcg acccgaccac cggcgcgccg ttcggcggcc
     3601 acctgctgac ctcgatgacc tcgtcgcagc gcatcaacac gccgctgccg gccggcgtga
     3661 actacaccga cgtcacccgg ttgtcctcgg tctgcatcgc cggcctcctc agccgcaagc
     3721 agctcgcgga atcgttcgga ctcagcccca gccaggtcga cgcgttcttc cacaacccca
     3781 ccacgctgcg gctcaacgtg tcgggcaccc tgcgctacgt gtccgacgcg cagctctatt
     3841 tcggcctgcg ggtggtcggc gactgagggg tcctgcgggc gcgcgccgcg cgggtggcgc
     3901 gggtggatgc gtgccgggtc ggcgcatccc ccgcgaccgt cttcgccggc gcgcgcttct
     3961 tcgcggcggc ggtcttctcc gccgcggtct tcgcggccgg ttgcttcgcc gccggtgcgt
     4021 tcgccgtggg cctggccggc cgttcgggcg cgatcgcatc gggcgcgcga tacagcacct
     4081 ggcactcgtc gcagaagaac gcgcgtcggc gcttctcgcc gagctgcttg cgccaggtga
     4141 tcttgttgcc gtcgcgcggg caggtcgacc tggtgtgcac ctggtagtgc ttgcgaagct
     4201 cgaaggcctt cttccatgcc aggaagtcga agctgtactc gcgcgcctgc cggatcagtt
     4261 cgccgagctt gcgcggcggc agcgcgccga cggcgctttc cggatgcacc cggatgcgcc
     4321 acagcacctc gttcttgatg atgttgccga cgcccgcgaa gatgtcctgt tcgagcagtg
     4381 cgtccgcggc cagcatcgcg ggctgcgcct tcagcttctt ccgcgcctgc ctcgcgtccc
     4441 aggcgtcggc catcacgtcg ccgctccagt cgtaggcggc gtcgaggtcg ccctcgatga
     4501 agcgcaccga gcaggcgtag aggttgagct cgccgttgtc gaagcgcagg ctcaggcgcg
     4561 ggctggcgtt ctccttcagc gcatcgaccc ggtagcggcc gaacagcatg aagtgcacgc
     4621 gcagcgcgaa gccgtcgaag gcgaccagga agtgcttgcc ccagctgcag atcgcgcgca
     4681 cccgctggcc cgccatgcgc tggatgtcct gccggctgtt gccggcgacc tcgcgcacga
     4741 cctggccggc gaacttggcg gcctcttcct tgaggatgac gatcgacggg ccttcgggca
     4801 tggccgccat gctggcggcc gcgcgtgcgc ggggccgtga acgcagtcag caacgcgcgg
     4861 gcgcggcggc ggcgtgcatt gccgcctgtg cgacgtggca gggcggggcg ggcagcgacc
     4921 acgctccgac gcctgcgctg gcgatgagga gcagggcgat cccgccgcgc aggaagacat
     4981 ggtgcaggca gcgcatggcg atctcccggt gcaggtgcac cacctacgat gcgccgcgcg
     5041 cgcggcgggt tg
//
LOCUS       DATIQC010000406         4125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_344309, whole genome shotgun sequence.
ACCESSION   DATIQC010000406 DATIQC010000000
VERSION     DATIQC010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344309"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..714)
                     /locus_tag="VLM17_08745"
     CDS             complement(<1..714)
                     /locus_tag="VLM17_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HSR65669.1"
                     /translation="MAISKIHLLLIVLAPLLGAIVAGLFRRQVGRAGAHTVTIAGVAT
                     SFALSAWVLWQLVGQGAIPFNENVYTWFQVGAYQAHVGFMIDKLTAMMMVVVTFVSLL
                     VHVYTIGYMEEDPGYQRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGF
                     WFKRPTATFASLKAFLVNRVGDFGFVLGIAAVLFFLHTLDYQTAFDHAPSLVGQTLAI
                     TNGTHWDAATVVCILLFIGA"
     gene            complement(853..1179)
                     /gene="nuoK"
                     /locus_tag="VLM17_08750"
     CDS             complement(853..1179)
                     /gene="nuoK"
                     /locus_tag="VLM17_08750"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011463804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HSR65670.1"
                     /translation="MTSGLATGLSLGHYLALGAALFCISVAGIFLNRKNVIVLLMSIE
                     LMLLAVNVNFVAFSRYLGDAAGQVFVFFILTVAAAEAAIGLAILVTLFRNRRTIDVAD
                     LDTLKG"
     gene            complement(1188..1844)
                     /locus_tag="VLM17_08755"
     CDS             complement(1188..1844)
                     /locus_tag="VLM17_08755"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012437965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HSR65671.1"
                     /translation="MDFALLAFYAFAAAAVASAGAVISVRNPVHAALFLVLTFFTVAC
                     TWILAGAEFLGVALILVYVGAVMVLFLFVVMMLDIDVARMREGWVRFLPVGLLVAVVM
                     LAEMLALIGVKARSAVPFEQNAAAPAAIGSEPNTTWLAKELFTDFLLPFEVAAVILTI
                     AVIAAVMLTLRRRVGAKHQDPAWQANVRARDRVRLVDVPTERPQSEPAADATDAEGKA
                     "
     gene            complement(1861..2349)
                     /gene="nuoI"
                     /locus_tag="VLM17_08760"
     CDS             complement(1861..2349)
                     /gene="nuoI"
                     /locus_tag="VLM17_08760"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005927506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HSR65672.1"
                     /translation="MSRIANYFRSLLLLELLAGLGLTLKYLFRPKYTLMYPMEKTPQS
                     PRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSEQRADGTRRTTRYDIDLFKC
                     IFCGFCEESCPVDSIVETHILEYTFDQRGQNVVTKPQLLALGDRLEPEIAARRAADSA
                     YR"
     gene            complement(2357..3421)
                     /gene="nuoH"
                     /locus_tag="VLM17_08765"
     CDS             complement(2357..3421)
                     /gene="nuoH"
                     /locus_tag="VLM17_08765"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HSR65673.1"
                     /translation="MNLMGLFDPLHAWLASFGPVGVLAWIVLTILAVMMPVIIAVAFY
                     VVWERKLIGWMHVRHGPMYVGKGVLQAFADVFKLLFKEVIQPSAAQRALYILAPMIAL
                     VPAFAAWAVVPFDARAVISNANSGLLYLLAMTSLGVYGIIIAGWASNSKYAFLGAMRS
                     AAQVVSYEIAMGFALVGVLIAAGSLNLTDIVMAQAGNAGPFEWFWLPLLPLFLVYFIS
                     GVAETNRAPFDVVEGESEIVAGHMVEYSGSQFALFFLAEYANMILVSFLTAIFFLGGW
                     LSPFQGLGIPFLSVDGWWWLFAKVFFFASVFIWFRASFPRYRYDQIMRLGWKVFIPIT
                     IAWICVTALLAYYGVFVPGA"
     gene            complement(3418..>4125)
                     /locus_tag="VLM17_08770"
     CDS             complement(3418..>4125)
                     /locus_tag="VLM17_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012511707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HSR65674.1"
                     /translation="QAMLREQRSAYVLYNIEPGLDFADQALAMQALGKAQVVAFSTFA
                     CASTRKVADVILPIGALPEIDATLTNLDGRDQRAVGGGKLPGEARPGWRVLRALGGML
                     QAAGFEFVDMDGLRAGLAAREVDVARGQAPTLAGNGLELATSQAIYRTDAVVRRAAAL
                     QAHPLTVGPRIVLHPRDAQAAGLAADAVAKVASDAGTATLPVAVSDQVAPGSAWIESG
                     YGATAPLASARVEVRGA"
BASE COUNT          749 a         1396 c         1421 g          559 t
ORIGIN      
        1 ggcgccgatg aacagcagga tgcagaccac cgtggccgca tcccaatgcg tgccgttggt
       61 gatggccaac gtctggccaa ccagactggg tgcgtggtcg aacgcggtct ggtaatccag
      121 cgtatgcagg aagaacagca cggcggcaat gccgagcacg aagccgaagt cacccacgcg
      181 gttgaccagg aaggctttga ggctggcgaa ggtggccgtg ggccgcttga accagaaacc
      241 gatcagcagg tacgacacca ggcccaccgc ttcccagccg aagaacagct gcaggaagtt
      301 gttgctcatc accagcatga gcatcgagaa ggtgaacagg ctgatgtagc tgaagaagcg
      361 ctggtagccc gggtcctcct ccatgtagcc gatggtgtag acgtgcacca gcagcgacac
      421 gaaggtgacc acgaccatca tcatcgcggt cagcttgtcg atcatgaagc cgacgtgcgc
      481 ctggtaggcg ccgacctgga accaggtgta gacgttctcg ttgaacggga tcgcgccctg
      541 ccccaccagc tgccacagca cccaggccga gagcgcgaag ctcgtcgcga cgccggcgat
      601 ggtgacggtg tgcgcgccgg cgcggccgac ctgcctgcgg aacaggccgg cgacgatcgc
      661 gcccagcagc ggggcgagca cgatcagcaa caagtggatt ttggagattg ccatttggtt
      721 ttccattact ccggtctcac tacccctgtc gctgccatcc atggcgagcg tcgccgcttc
      781 ggaccacccc gcccgggcgt catgcccggg ccttcgcgcc ggcgcgagcc cgtggctcgc
      841 aagcgccgtc gctcacccct tcaacgtgtc gaggtcggcg acgtcgatcg tgcgccggtt
      901 gcggaacagg gtgaccagga tcgccaggcc gatcgcggcc tcggccgcgg ccaccgtgag
      961 gatgaagaac acgaacacct gccccgccgc gtcgccgagg tagcgcgaga acgcgacgaa
     1021 gttgacgttg acggcgagca gcatcagctc gatcgacatc agcagcacga tcacgttctt
     1081 ccggttgagg aagatgccgg ccacgctgat gcagaacagc gcggcgccga gcgcgaggta
     1141 gtgaccgagc gagagcccgg tggccagccc gctggtcatg agcacgttca tgccttgccc
     1201 tccgcgtcgg tggcgtccgc ggccggttcg gactgcgggc gctcggtcgg cacgtcgacc
     1261 agccgcacgc ggtcgcgcgc acgcacgttc gcctgccacg ccggatcctg gtgcttggcg
     1321 ccgacgcgcc ggcgcagggt cagcatcacc gccgcgatca ccgcgatggt gaggatcacc
     1381 gccgccactt cgaacggcag caggaagtcg gtgaacagct ccttcgccag ccaggtcgtg
     1441 ttcggctcgc tgccgatcgc cgccggcgcg gccgcgttct gctcgaacgg caccgcgctg
     1501 cgtgccttga cgccgatcag ggcgagcatc tcggccagca tgaccaccgc cacgagcagc
     1561 ccgaccggca ggaagcgcac ccagccttcg cgcatccgcg cgacgtcgat gtcgagcatc
     1621 atcaccacga acaggaacag caccatcacc gcgccgacgt agaccaggat cagcgcgacg
     1681 ccgaggaact cggcgcctgc gaggatccag gtgcaggcga cggtgaagaa ggtcagcacc
     1741 aggaacagcg cggcgtgcac cgggttgcgg acgctgatca ccgccccggc ggaagcgacg
     1801 gccgccgcgg cgaaggcgta gaaggcgagc agggcgaaat ccatcacggt ccccgtgcgg
     1861 tcagcggtag gccgagtcgg ccgcgcggcg cgcggcgatc tcgggctcca ggcggtcgcc
     1921 cagcgccagc agctgcggct tggtcaccac gttctgcccg cgctggtcga aggtgtattc
     1981 gaggatgtgg gtctcgacga tggagtcgac cgggcaggac tcctcgcaga acccgcagaa
     2041 gatgcacttg aacaggtcga tgtcgtagcg cgtggtgcgg cgggtgccgt cggcgcgctg
     2101 ctccgagtcg atggtgatcg ccagcgccgg gcacaccgcc tcgcacagct tgcaggcgat
     2161 gcagcgctcc tccccgttgg ggtagcggcg cagcgcgtgc aggccgcgga agcgcggcga
     2221 ctgcggcgtc ttctccatcg ggtacatcag cgtgtacttc ggccggaaca ggtacttgag
     2281 ggtcaggccg aggcccgcaa ggagttcgag caggagcagg ctgcggaagt agttggcgat
     2341 gcggctcatg tcagtctcag gctcccggca cgaacacgcc gtagtacgcc agcagcgcgg
     2401 tgacgcagat ccaggcgatg gtgatcggga tgaacacctt ccagcccagc cgcatgatct
     2461 ggtcgtagcg gtagcgcggg aacgaggcgc ggaaccagat gaagacgctg gcgaagaaga
     2521 acaccttggc gaacagccac caccagccgt cgaccgaaag gaacgggatg ccgaggccct
     2581 ggaacgggct cagccagccg ccgaggaaga agatcgcggt caggaagctg accaggatca
     2641 tgttggcgta ctcggcgagg aagaacagcg cgaactgcga gccggaatac tcgaccatgt
     2701 ggccggcgac gatttccgac tcgccttcga ccacgtcgaa cggcgcgcgg ttggtctcgg
     2761 ccacgccgga aatgaaatac accaggaaca gcggcagcag cggaagccag aaccattcga
     2821 acggcccggc gttgcccgcc tgcgccatca cgatgtcggt gaggttgagg ctgccggcgg
     2881 cgatcagcac gcccaccagg gcgaagccca tcgcgatctc gtagctcacc acctgcgcgg
     2941 ccgagcgcat cgcgccgagg aaggcgtact tcgagttcga cgcccagccg gcgatgatga
     3001 tgccgtacac cccgagcgag gtcatcgcca gcaggtacag cagcccggag ttggcgttcg
     3061 agatcaccgc cctggcatcg aacggcacca ccgcccaggc ggcgaaggcc ggcaccagcg
     3121 cgatcatcgg cgcgaggatg tacagcgcgc gctgcgccgc ggagggctgg atgacctcct
     3181 tgaacagcag cttgaacacg tcggcgaagg cctgcagcac gcccttgccg acgtacatcg
     3241 gcccgtggcg cacgtgcatc cacccgatca gcttgcgctc ccacaccacg tagaaggcga
     3301 ccgcgatgat caccggcatc atcaccgcga ggatcgtcag cacgatccac gcgagcacgc
     3361 cgacggggcc gaacgaggcg agccaggcgt gcagcggatc gaagagtccc atcaggttca
     3421 tgcgccacgc acctccacgc gggcggacgc cagcggcgcg gtggcgccgt agcccgactc
     3481 gatccaggca ctgcccggcg cgacctggtc gctgaccgcg accggcagcg tcgccgtgcc
     3541 ggcgtcgctg gcgaccttgg ccacggcatc ggcggccagg cccgcggcct gcgcgtcccg
     3601 cgggtgcagg acgatgcgcg gaccgacggt gagcggatgc gcctgcagcg cggccgcgcg
     3661 gcggacgacc gcgtcggtgc ggtagatcgc ctgcgaggtt gcgagctcga ggccgttgcc
     3721 ggcgagcgtc ggcgcctgcc ccctggcgac gtcgacctcg cgcgccgcga ggccggcgcg
     3781 caggccgtcc atgtcgacga actcgaagcc cgccgcctgc agcatgccgc ccagcgcgcg
     3841 cagcacgcgc cagcccgggc gcgcctcgcc cggaagcttg ccaccgccga ccgcccgctg
     3901 gtcgcggccg tcgaggttgg tcagcgtcgc gtcgatttcc ggcagcgcgc cgatcggcag
     3961 gatcacgtcg gcgaccttgc gggtcgacgc gcacgcgaac gtgctgaacg ccaccacctg
     4021 cgccttgccg agcgcctgca tggcgagcgc ctggtcggcg aagtccaggc ccggctcgat
     4081 gttgtagagg acgtaggcgc tgcgctgttc gcgcagcatc gcctg
//
LOCUS       DATIQC010000407         1666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_415349, whole genome shotgun sequence.
ACCESSION   DATIQC010000407 DATIQC010000000
VERSION     DATIQC010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415349"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1410
                     /gene="recG"
                     /locus_tag="VLM17_08775"
     CDS             <1..1410
                     /gene="recG"
                     /locus_tag="VLM17_08775"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017161420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HSR65675.1"
                     /translation="RLAMEELLAHHLSLRRQRIAQQAHAAPPLTKQALAQRLRKALPF
                     ALTGAQQRVFEQIRVDLAKPHPMLRLVQGDVGSGKTVVAALSALLAVEAGKQAALMAP
                     TELLAEQHYNSLRGWLEPLGVRVAWLAGKVTGRARAQALAEVARGDARVVVGTHALMQ
                     EGVVFDDLALAIVDEQHRFGVHQRLALRDKGSASGNVPHQLVMTATPIPRTLAMAAYA
                     DLDVSAIDELPPGRTPVQTVALSAERRAELVERIRAACREGRQAYWVCTLIDDSDEVV
                     AQAAQSTFEALSAALPEVRVGLVHGRMKAADKQATMRAFKEGALGLLVATTVIEVGVD
                     VPNASLMIVENAERLGLAQLHQLRGRVGRGSAASSCVLLYQPPLSLLARQRLETMRET
                     NDGFVIAEKDLQLRGPGELLGTRQTGLPGFRLADLARDADLLPQVQALAARLLAEHPG
                     LADAVIARWVGGAARYASA"
     gene            1506..>1666
                     /locus_tag="VLM17_08780"
     CDS             1506..>1666
                     /locus_tag="VLM17_08780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HSR65676.1"
                     /translation="MKADIHPDYREVVFQDVTSDFKFLTRSTLSSKETTKWTDGNEYP
                     LIKVEISSAS"
BASE COUNT          242 a          598 c          607 g          219 t
ORIGIN      
        1 cgactggcga tggaagagct gctggcgcac cacctcagcc tgcgtcgcca gcgcatcgcc
       61 cagcaggcgc acgctgcgcc gccgctgacg aagcaggcgc tggcgcagcg cctgcgcaag
      121 gcgctgccgt tcgcgctgac gggcgcccag cagcgcgtgt tcgaacagat ccgcgtcgac
      181 ctcgccaaac cgcatccgat gttgcgcctg gtgcagggcg acgtcggcag cggcaagacc
      241 gtggtcgccg cgctgtcggc gctgctcgcg gtcgaagccg gcaagcaggc cgcgctgatg
      301 gcgccgaccg aactgctcgc cgagcagcac tacaacagcc tgcgcggctg gctggagccg
      361 ctgggcgtgc gcgtcgcgtg gctggcaggc aaggtcaccg gcagggcgcg cgcgcaggcg
      421 ctggccgaag tggcgcgcgg cgacgcccgg gtcgtcgtcg gtacccacgc gctgatgcag
      481 gaaggcgtcg tcttcgacga cctcgcgctg gccatcgtcg acgagcagca ccgcttcggc
      541 gtgcaccagc gcctggcgct gcgcgacaag ggatctgcga gcggcaacgt gccgcaccag
      601 ctggtgatga cggccacgcc gatcccgcgc acgctggcga tggccgccta cgccgacctc
      661 gacgtgtccg cgatcgacga gctgccgccg gggcgcacgc cggtgcagac cgtcgcgctc
      721 agtgccgagc ggcgcgccga actggtcgag cgcatccgcg cggcctgccg cgaggggcgc
      781 caggcgtact gggtgtgcac gctgatcgac gacagcgacg aggtcgtcgc gcaggccgcg
      841 cagtcgacct tcgaggcgct gtcggcggcg ctgccggaag tgcgggtcgg cctcgtgcac
      901 ggacgcatga aggcggcgga caagcaggcg accatgcgcg cgttcaagga aggcgcgctc
      961 ggcctgctgg tggcgaccac ggtgatcgag gtcggcgtgg acgtgccgaa cgcctcgctg
     1021 atgatcgtcg agaacgccga acgcctcggc ctggcccagc tgcaccagct gcgcgggcgg
     1081 gtcgggcggg gcagcgcggc atcgagctgc gtgctgctgt accagccgcc gctgtcgctg
     1141 ctcgcgcgcc agcgcctgga gaccatgcgc gagaccaacg acggcttcgt gatcgcggag
     1201 aaggacctgc agctgcgcgg cccgggcgaa ctgctcggca cccggcagac cgggctgccg
     1261 ggcttccgcc tcgccgacct ggcccgcgat gccgacctgc tgccccaggt gcaggcgctc
     1321 gccgcgcgcc tgctggccga gcaccccggg ctggccgacg cggtgatcgc gcgctgggtc
     1381 ggcggcgccg cgcgctacgc ctcggcctga acggcccggc ggcgccaggc cgccggatgc
     1441 agttgcgcgg ggtgccgtcc actggctaca atgccgctct ttccctgcag caacccggtg
     1501 ccgccatgaa ggccgacatc catcccgatt accgcgaagt cgtcttccag gacgtgactt
     1561 cggacttcaa gttcctgacc cgctcgacgc tctcctccaa ggagacgacc aagtggacgg
     1621 acggcaacga gtacccgctg atcaaggtgg aaatctcgtc ggcctc
//
LOCUS       DATIQC010000408         2775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_167685, whole genome shotgun sequence.
ACCESSION   DATIQC010000408 DATIQC010000000
VERSION     DATIQC010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2775
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167685"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1345)
                     /gene="accC"
                     /locus_tag="VLM17_08785"
     CDS             complement(<1..1345)
                     /gene="accC"
                     /locus_tag="VLM17_08785"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HSR65677.1"
                     /translation="MLEKVVIANRGEIALRILRACHALGIRTVAVHSTVDRNLKHVAM
                     ADESVCIGPAPSSESYLNMPAIIAAAEVTDAQAIHPGYGFLSENADFAERVEQSGFVF
                     IGPKADTIRLMGDKVEAIRAMKDAGVPCVPGSGGPLGDDTVVNAKLAREIGYPVIIKA
                     AGGGGGRGMRVVHTEAALANAIATTKSEAKAAFGNDMVYMEKFLENPRHVEIQVLADG
                     QGNAIHLGERDCSMQRRHQKVVEEAPAPGITPEQRAEIGRVCTEACVRIGYRGAGIFE
                     FLYEAGRFYFIEMNTRIQVEHPVTELVTGIDLVREQLNIAAGHKLSLKQEDIVLEGHA
                     IECRINAEDPDSFLPSPGLIQHFHAPGGPGVRVDSHIYEGYRVPANYDSMIGKLIVHG
                     PDRETAIARMRVALSEMVVDGIKTNIPLQQRILADGGFQQGGQNIHYLEKRLAERK"
     gene            complement(1394..1870)
                     /gene="accB"
                     /locus_tag="VLM17_08790"
     CDS             complement(1394..1870)
                     /gene="accB"
                     /locus_tag="VLM17_08790"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HSR65678.1"
                     /translation="MDLRKIKKLIDLLEESNLAEIEIREGEESVRLARVPQGTMVAAA
                     PQVIHAAPVAAAAAMPMSSPTEAATGGHAKAGQDLPDGDVVRSPMVGTFYTAPAPDKP
                     PFVTVGQAIKAGDTLGIIEAMKMFNPIEAEVSGTVLKILVESGQPVEFDQPLFVIG"
     gene            complement(1900..2373)
                     /gene="aroQ"
                     /locus_tag="VLM17_08795"
     CDS             complement(1900..2373)
                     /gene="aroQ"
                     /locus_tag="VLM17_08795"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HSR65679.1"
                     /translation="MAKLLVLHGPNLNLLGSREPEVYGRTTLAEIDAALAARAQAAGH
                     VLESLQSNSELALIDRVQAARDDGTDFILINPAAFTHSSVAIRDALAAVRVPFVEVHL
                     SNPHAREPFRHTSFFSDLAVGTIAGFGADSYRFALEAALARLARQAAELVPAGTP"
     gene            complement(2483..>2775)
                     /locus_tag="VLM17_08800"
     CDS             complement(2483..>2775)
                     /locus_tag="VLM17_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014038669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HSR65680.1"
                     /translation="KEMPELQRFAATQGPNGVQVVGIALDDVAAVRAFLRRVPVRYPI
                     LVDAPGPADAGVRLGNPRGVLPYSVLVSADGRLLKQRIGPFDPGELGAWARP"
BASE COUNT          388 a          916 c         1010 g          461 t
ORIGIN      
        1 ctttccgttc cgccaaccgc ttctcgaggt agtggatgtt ctgtccacct tgctggaagc
       61 cgccgtcggc gaggatgcgc tgctgcagcg ggatgttggt cttgatgccg tcgaccacca
      121 tctcgctcag cgccacccgc atgcgtgcga tcgcggtctc gcggtcgggg ccgtgcacga
      181 tgagcttgcc gatcatcgag tcgtagttcg cggggacgcg gtagccctcg tagatgtgcg
      241 aatccacgcg cacgcccggc ccgcccggcg cgtggaagtg ctggatcagg cccgggctgg
      301 gcaggaagct gtccgggtcc tcggcgttga tgcggcactc gatcgcgtgg ccctcgagga
      361 cgatgtcctc ctgcttcagc gacagcttgt gccccgcggc gatgttgagc tgctcgcgca
      421 ccaggtcgat gccggtgacc agttcggtga ccggatgctc gacctggatg cgggtgttca
      481 tctcgatgaa gtagaagcgt cccgcttcgt acaggaactc gaagatgccg gcgccgcggt
      541 agccgatgcg gacgcacgcc tcggtgcaca cgcggccgat ctcggcgcgc tgctccggcg
      601 tgatgcccgg cgccggcgct tcctcgacca ccttctggtg gcggcgctgc atcgagcagt
      661 cgcgttcgcc gaggtggatc gcgttgccct ggccgtcggc gagcacctgg atctcgacgt
      721 ggcgcgggtt ctcgaggaac ttctccatgt acaccatgtc gttgccgaag gccgccttgg
      781 cctccgactt cgtggtggcg atggcgttgg cgagcgcggc ctcggtgtgc accacgcgca
      841 tgccgcggcc gccgccgccg cccgccgcct tgatgatcac cgggtagccg atctcgcgcg
      901 cgagcttcgc gttgacgacc gtgtcgtcgc cgagcggccc gccgctgccc ggcacgcacg
      961 gcacgccggc gtccttcatc gcgcggatcg cctcgacctt gtcgcccatc aggcggatgg
     1021 tgtccgcctt cggcccgatg aagacgaagc cggactgctc gacgcgctcg gcgaagtcgg
     1081 cgttctcgga caggaagccg tagccgggat ggatcgcctg cgcgtcggtc acttccgccg
     1141 cggcgatgat cgccggcatg ttgaggtagc tttcggacga cggcgccggg ccgatgcaca
     1201 ccgactcgtc ggccatcgcc acgtgcttga ggttgcggtc gacggtggaa tgcaccgcga
     1261 ccgtgcggat gccgagcgcg tggcacgcgc gcaggatgcg cagcgcgatt tcgccccggt
     1321 tggcgatgac gaccttctcc agcatgaaaa ttttcccgtt cgtcctgagc gtagcggagc
     1381 ggagtcgaag gactcagccg atcacgaaca gcggctggtc gaactcgacc ggctggccgc
     1441 tctcgaccag gatcttcagc acggtgccgg agacctccgc ctcgatcggg ttgaacatct
     1501 tcatcgcctc gatgatgccg agggtgtcgc cggccttgat cgcctggccg acggtgacga
     1561 acggcggctt gtccggcgcc ggcgcggtgt agaaggtgcc gaccatcggc gagcgcacga
     1621 cgtcgccgtc cggcaggtcc tggccggcct tggcgtggcc gccggtggcg gcttcggtcg
     1681 gcgaggacat cggcatcgcc gcggccgcgg cgaccggggc ggcatggatg acctgcggcg
     1741 cggcggcgac catcgtgccc tgcggcacgc gcgccaggcg cacggactcc tcgccttcgc
     1801 ggatttcgat ttcggcgagg ttggattcct cgaggaggtc gatcagcttc ttgatcttgc
     1861 ggaggtccat gacgggctct ctgaagggtg aagtcgggtc tagggcgtgc cggcgggcac
     1921 gagttcggcg gcctgccgcg ccagccgcgc cagcgccgcc tcgagcgcga agcggtagct
     1981 gtcggcgccg aagccggcga tggtgccgac ggcgaggtcg ctgaagaaac tggtgtggcg
     2041 gaacggctcc cgcgcatgcg ggttggacag gtgcacttcg acgaagggca cccgcaccgc
     2101 cgccagcgcg tcgcggatcg cgaccgagct atgggtgaag gcggccgggt tgatcaggat
     2161 gaagtcggtg ccgtcgtcgc gcgcggcctg cacgcggtcg atcagcgcca gttcgctgtt
     2221 ggattgcagg ctttccagca cgtggccggc ggcctgcgcg cgggcggcga gggccgcgtc
     2281 gatctcggcg agggtggtgc ggccatacac ctccggctcg cgcgagccga gcaggttgag
     2341 gttggggccg tgcaggacca gcagcttcgc catgcgcccg gggggagccg aggggaggcg
     2401 cagtctgcgg caaagccgct cgactgtcca tgcaatccct gcgaaatcga cgaacttggc
     2461 cagcttaaag cgggcgtttg actcaggggc gggcccaggc gccgagctcg ccgggatcga
     2521 acgggccgat ccgctgcttg agcaggcggc cgtcggcgga caccaggacg gaatagggca
     2581 gcacgcccct ggggttgccg aggcgcacgc cggcgtcggc cggcccaggc gcatcgacca
     2641 ggatcggata gcgcaccggc acgcgccgga ggaaggcccg gaccgcggcg acgtcgtcca
     2701 gcgcgatgcc gaccacttgc acgccgttcg gaccctgcgt ggcggcgaag cgctgcagtt
     2761 ccggcatctc cttca
//
LOCUS       DATIQC010000409         5035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_344455, whole genome shotgun sequence.
ACCESSION   DATIQC010000409 DATIQC010000000
VERSION     DATIQC010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5035
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344455"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..798
                     /locus_tag="VLM17_08805"
     CDS             <1..798
                     /locus_tag="VLM17_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011348449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HSR65681.1"
                     /translation="ATTDADANYVYYGVREFAMTAISNGLALHGCFIPYDATFLVFSD
                     YARNAVRMSALMGAHAIHVYTHDSIGLGEDGPTHQPVEHLASLRLIPDNDVWRPCDAV
                     ESAVAWRAAIERDDGPSCLVFSRQNLAHQARGEQQVADIRRGGYVLRDCAGAPELILL
                     ATGSEVGLAMQAAEQLGDKVRVVSMPSTDVFDRQDAAYRESVLPRDCRRRVAVEAGVS
                     DFWRKYVGLDGAVVGIDGFGASAPAEALFPQFGFTVERVVEAARALR"
     gene            801..1409
                     /locus_tag="VLM17_08810"
     CDS             801..1409
                     /locus_tag="VLM17_08810"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014647267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HSR65682.1"
                     /translation="MAARGAKRVAGRRLPRAFYRRDPREVAPELLNKLLASADGRVAR
                     IVETEAYCGPLDAAAHSYRGQTPRNAVMFGRPGLLYVYFTYGMHWCSNAVCGEEGEGV
                     AVLLRAAEPVAGLELMRAARPAAKRDRDLCSGPARLCQAFGIDRARDGADLVSADMGL
                     AILDDGVPPPADPVVGPRIGIRHAAEEPWRWHVRGNPHVSKP"
     gene            complement(1481..2230)
                     /locus_tag="VLM17_08815"
     CDS             complement(1481..2230)
                     /locus_tag="VLM17_08815"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSR65683.1"
                     /translation="MPHADLLLAALLFAVATLYSSVGHAGASGYIAAMALLGFAPDQV
                     RPTALALNLLVGGIGLWRWWRGGFVRWHNVLPFVLASAPAAFFAAQVKLPKESYSLLL
                     GGVLLVAAIGVFRHAARAESEDREAAGRRVPWLAGLAVGAAIGVLSGLTGTGGAIFLT
                     PLLLFARWMPTREASGTSVAFVWINSLTGLAGLLHASGTLPRALPLWLVAVALGALLG
                     TQLGLRWLPVRGLRRALGVVLLVAAGKLLFA"
     gene            complement(2327..3199)
                     /locus_tag="VLM17_08820"
     CDS             complement(2327..3199)
                     /locus_tag="VLM17_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007510337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR65684.1"
                     /translation="MDTQPRVTPFFHADSNTWTYLVADPASQAAAIVDPVLDFDPKSG
                     RTSTSSAQALLDAVAREGLDVQWILETHAHADHLTAAHWLKQRLPRASVAIGEGIRAV
                     QATFRDIYALGADFPVDGSQFGHLFTDGERFSVGTLPARVFAVPGHTADSVAYLVGDA
                     LFTGDSLFMPDGGTARCDFPGGDAATLYRSIHRLFDELPADTRVFVCHDYGPGGRPVA
                     CETTLAAQRHDNIHVRDDRGEAEFVQLRTARDATLPMPGLLLPAVQVNIRAGALPEPE
                     ANGVRYLKLPLDRF"
     gene            complement(3199..3543)
                     /locus_tag="VLM17_08825"
     CDS             complement(3199..3543)
                     /locus_tag="VLM17_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005997832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HSR65685.1"
                     /translation="MAARRKPTSIDPEAMRRHAGEAARLLKALGNEKRLQLLCLLVEG
                     ERSVGELNARLDLSQSALSQHLALLREDGLVRARREAQVVYYSLAPGPAHRVLDTLHA
                     VYCADRAGCKEP"
     gene            complement(3545..3928)
                     /locus_tag="VLM17_08830"
     CDS             complement(3545..3928)
                     /locus_tag="VLM17_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009579511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR65686.1"
                     /translation="MTTAADLVADARSRVRELAPEAFSAARADCVLIDVREPAEFEAG
                     HLPDAVNIPRGVLEFQVDAHPAVANVADPALAHRGRPVVVYCRTGGRAALAADALQQL
                     GFRDVRSIAGGIEACIAAGLPLTQR"
     gene            4017..>5035
                     /locus_tag="VLM17_08835"
     CDS             4017..>5035
                     /locus_tag="VLM17_08835"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008217345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HSR65687.1"
                     /translation="MASIVVIGAGLGGMSAAFELRETLGEAHPVTVVGQGGRFAFTPS
                     NPWLAVGWRNPEQTSLDAGECLARRGIAFDDTGAARIDAAARQVHAGGGAVLDYDYLV
                     ICTGPKLAFDEVPGLGPDGGHTQSVCTLPHALQAWSAYEAFLREPGPVVIGAAQGASC
                     FGPAYEFAMILDADLRKRKLRDRVPMSFVTSEPYIGHMGLGGVGDSRGLLESELRQRH
                     IRWTTNAKLREARAGELVAVEHDAKGEPLAEQALPFRYAMVLPAFRGVDAVAAVPGLC
                     NPRGFVTVDRHQRSTADPRIFAAGVCVAIPPVEATPVPTGAPKTGFMIESMVTTIVRN
                     IQAELT"
BASE COUNT          725 a         1786 c         1868 g          656 t
ORIGIN      
        1 gcgaccaccg acgccgacgc caactacgtc tactacggcg tgcgcgagtt cgcgatgacc
       61 gcgatctcca atggcctcgc gctgcacggc tgcttcatcc cgtacgacgc gaccttcctc
      121 gtcttcagcg actacgcgcg caatgcggtg cgcatgagcg cgctgatggg cgcgcatgcg
      181 atccacgtgt acacgcacga ctcgatcggc ctcggcgagg acggcccgac ccaccagccg
      241 gtcgagcacc tcgcgtccct gcgcctgatc ccggacaacg acgtgtggcg cccgtgcgac
      301 gcggtcgagt cggcggtggc ctggcgcgcg gcgatcgagc gcgacgacgg cccgtcctgc
      361 ctcgtgttct cgcgccagaa cctcgcccac caggcgcgcg gcgagcagca ggtcgccgac
      421 atccgccgcg gcggctacgt gctgcgcgac tgcgccggcg ccccggagct gatcctgctc
      481 gccaccggtt cggaagtcgg cctcgccatg caggcggcgg aacaactggg cgacaaggtg
      541 cgcgtggtgt cgatgccgtc gaccgacgtg ttcgaccgcc aggacgccgc gtaccgcgaa
      601 tccgtgctgc cgcgcgactg ccgccggcgc gtcgccgtcg aagcgggcgt cagcgacttc
      661 tggcgcaagt acgtcggcct cgacggcgcg gtggtcggca tcgacgggtt cggcgccagc
      721 gcgccggccg aggcgctgtt cccgcagttc ggcttcaccg tcgagcgcgt ggtcgaggcg
      781 gcgcgcgcgc tgcgctgagc atggccgcgc gtggcgcgaa gcgcgtggcg ggccggcgcc
      841 tgccgcgcgc gttctaccgg cgcgatccgc gcgaggtcgc gcccgagctg ctcaacaagc
      901 tgctggcgtc ggccgacggc cgcgtcgcgc gcatcgtcga gaccgaggcg tactgcggtc
      961 cgctcgacgc cgccgcgcac agctaccgcg ggcagacgcc gcgcaacgcg gtgatgttcg
     1021 gcaggccggg cctgctgtac gtctacttca cctacggcat gcactggtgc agcaatgccg
     1081 tgtgcggcga ggaaggcgag ggcgtggcgg tactgctgcg cgccgccgag cccgtcgccg
     1141 gcctcgagct gatgcgcgcc gcgcgccccg cggcgaagcg cgaccgcgac ctgtgcagcg
     1201 ggccggcgcg cctgtgccag gccttcggca tcgaccgcgc ccgggatggc gcggacctcg
     1261 tcagcgccga catgggcctg gcgatcctcg acgacggcgt gccgccgccg gccgatcccg
     1321 tggtcggccc gcgcatcggc atccgccacg ccgccgagga accatggcgc tggcatgtgc
     1381 gcggcaatcc gcacgtgtcg aagccgtagc ccggcaagcg cagcgcaccc tggatgcgga
     1441 tgcgggtgtt tccccggtgc ggcccgcggc cttgcccgga ctacgcgaac agcagttttc
     1501 ccgccgccac cagcagcacg acgccgagcg cacggcgcag cccgcgcacc ggcagccagc
     1561 gcaggccgag ctgggtaccg agcagcgcgc cgagcgccac cgcgaccagc cacaacggca
     1621 gcgcgcgcgg caacgtgccg ctggcatgca gcagcccggc caggccggtc agcgagttga
     1681 tccagacgaa ggcgacggag gtgccgctcg cctcgcgcgt gggcatccag cgcgcgaaca
     1741 gcagcagcgg ggtgaggaag atcgcgccgc cggtgccggt caggcccgac agcacgccga
     1801 tcgccgcgcc caccgcgagg cccgccagcc acggcacgcg ccggcccgcg gcttcgcgat
     1861 cctcgctctc ggcgcgcgcg gcgtgccgga acacgccgat cgccgccacc agcagcaccc
     1921 cgcccagcag cagcgaataa ctttccttcg gcagcttcac ctgcgcggcg aagaaggccg
     1981 cgggcgccga tgcgagcacg aacggcagga cgttgtgcca gcgcacgaag ccgccgcgcc
     2041 accagcgcca caggccgatg ccgccgacca gcaggttgag ggcgagcgcg gtcggccgca
     2101 cctggtccgg cgcgaagccg agcagcgcca tcgccgcgat gtagccgctg gcgccggcgt
     2161 ggccgaccga ggaatacagc gtggcgaccg cgaacaggag cgcggcgagc aggagatcgg
     2221 cgtgcggcat gctgcgcccg gctggcgaaa gcggcgaggg tgccagcgcg gcgggcgcgg
     2281 cgccagcggg ccggcggccc ggcccgcggg aacgacttgc ccccggctag aagcggtcga
     2341 gcggcagttt caggtagcgc acgccgttag cttccggttc cggcagcgcg ccggcgcgga
     2401 tgttgacctg caccgccggc agcagcagcc ccggcatcgg cagggtggcg tcgcgcgcgg
     2461 tgcgcagctg cacgaactcg gcctctccac ggtcgtcgcg cacgtggatg ttgtcgtggc
     2521 gctgcgcggc gagcgtggtt tcgcaggcga ccggccggcc gccggggccg tagtcgtggc
     2581 agacgaacac gcgggtgtcg gcgggcagtt cgtcgaacag gcggtggatc gagcgataca
     2641 gcgtggccgc gtcgccgccg gggaaatcgc agcgcgcggt gccgccgtcg ggcatgaaca
     2701 gcgaatcgcc ggtgaacagc gcgtcgccga ccaggtaggc gacgctgtcc gccgtgtgcc
     2761 cggggaccgc gaacacgcgc gccggcagcg tgccgacgga gaaccgctcg ccatcggtga
     2821 agaggtggcc gaactgggag ccgtcgacgg ggaagtccgc gcccagcgcg tagatgtcgc
     2881 ggaacgtcgc ctgcaccgcg cggatgcctt cgccgatggc gacgcttgcg cggggcaggc
     2941 gctgcttgag ccagtgcgcg gcggtgaggt ggtcggcgtg cgcgtgggtt tcgaggatcc
     3001 actgcacgtc gaggccctcg cgcgcgaccg catcgagcag cgcctgcgcg gaagaagtcg
     3061 acgtgcggcc ggacttggga tcgaaatcga gcaccggatc gacgatcgcc gccgcctggc
     3121 tggccggatc ggccacgagg taggtccagg tgttgctgtc ggcgtggaag aacggcgtga
     3181 cccgcggctg ggtgtccatc atggctcctt gcagccggcg cgatccgcgc agtagaccgc
     3241 gtgcagcgtg tcgagcacgc gatgcgcggg cccgggcgcc agcgagtagt acaccacctg
     3301 cgcctcgcgg cgggcccgca ccaggccgtc ctcgcgcagc agcgccaggt gctgggagag
     3361 cgccgactgg ctgaggtcca ggcgcgcgtt gagttcgccc acgctgcgct cgccctcgac
     3421 cagcaggcac agcagctgca gccgcttctc gttgccaagg gctttcagca ggcgcgcggc
     3481 ctcgcccgcg tgccggcgca tggcctcggg atcgatggac gtgggcttgc ggcgtgcggc
     3541 catgtcagcg ctgggtgagc ggcaggcccg cggcgatgca ggcttcgata ccgccggcga
     3601 tcgaccgtac gtcgcggaag cccagttgct gcagggcgtc ggcggcgagc gcggcgcggc
     3661 cgccggtgcg gcagtagacc acgaccggcc gcccgcgatg cgccagcgcc ggatcggcga
     3721 cgttggccac ggccgggtgc gcgtcgacct ggaactcgag cacgccacgc ggaatgttga
     3781 ctgcatccgg gagatggccg gcttcgaatt ccgcgggttc cctgacgtcg atcaggacgc
     3841 agtccgcgcg ggcggcgctg aatgcctccg gggcgagttc gcggaccctg ctgcgggcgt
     3901 cggcgacgag gtcggcggcg gtggtcatcg gcgtttcccc agatgggagg aggtgcgcac
     3961 tatatcagtt gacgctaata ttagaaataa ctaatataac caacaggagg tggcccatgg
     4021 ccagcatcgt ggtgatcgga gcggggctcg gcggcatgtc cgccgccttc gagttgcggg
     4081 aaaccctggg cgaggcgcat cccgtcacgg tggtcgggca gggcggacgc ttcgccttca
     4141 ccccctcgaa cccgtggctg gcggtgggct ggcgcaaccc ggagcagacc agcctcgacg
     4201 ccggcgaatg cctcgcccgg cgcggcatcg ccttcgacga caccggcgcc gcgcgcatcg
     4261 atgcggccgc gcgccaggtg catgccggcg gcggcgcggt gctcgactac gactatctgg
     4321 tcatctgcac gggccccaag ctcgctttcg acgaagttcc gggactgggt cccgacggcg
     4381 ggcatacgca gtcggtgtgc acgctgccgc acgcgctgca ggcgtggtcg gcctacgagg
     4441 ccttcctgcg cgaaccgggg ccggtggtga tcggcgccgc acagggcgcg agctgcttcg
     4501 ggcccgcgta cgaattcgcg atgatcctcg acgccgacct gcgcaagcgg aagctgcgcg
     4561 acagggtgcc gatgagtttc gtcaccagcg agccctacat cggccacatg ggcctgggcg
     4621 gcgtcggcga ttccaggggg ctgctggagt ccgagttgcg ccagcgccac atccgctgga
     4681 ccaccaacgc aaagctgcgc gaagcgcgcg cgggcgaact ggtcgcggtc gagcacgacg
     4741 cgaagggcga gccgctcgcc gagcaggcgt tgccgttccg ctacgcgatg gtgctgccgg
     4801 cgttccgtgg cgtggatgcg gtcgcggcgg tgcccggcct gtgcaatccg cgcggcttcg
     4861 tcacggtcga ccggcaccag cgcagcaccg cggacccgcg catcttcgcc gccggcgtat
     4921 gcgtcgcgat cccgccggtg gaagccaccc ccgtgcccac cggtgcgccc aagaccggct
     4981 tcatgatcga gtcgatggtg accaccatcg tgcgcaacat ccaggcggaa ctcac
//
LOCUS       DATIQC010000410         6445 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_132513, whole genome shotgun sequence.
ACCESSION   DATIQC010000410 DATIQC010000000
VERSION     DATIQC010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6445
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132513"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..386
                     /locus_tag="VLM17_08840"
     CDS             117..386
                     /locus_tag="VLM17_08840"
                     /inference="COORDINATES: protein motif:HMM:NF024901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4124 domain-containing protein"
                     /protein_id="HSR65688.1"
                     /translation="MRAGWAIAGGLALGIGLAWWLARDPAADRRRAERAGRAGTAQAI
                     DARRDLYRWHDAAGVLHVSDTPPKGVHAERVAREPRTGIEVHGDR"
     gene            547..2265
                     /locus_tag="VLM17_08845"
     CDS             547..2265
                     /locus_tag="VLM17_08845"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HSR65689.1"
                     /translation="MRLSQFHLHTSKETPAEAEIASHQLMLRAGMLRKLAAGLYTWSP
                     LGLRVLRKVEAVVREEMDRAGAIELLMPTIQPQELWEETGRWQKFGGQLLKIKDRKEA
                     GYCYGPTAEEVITDFARNELASYKQLPVNFYNIQTKFRDEIRPRFGVMRAREFLMKDA
                     YSFHLDDASLAVEYRNMYDTYGRIFTRLGLEHRAVAADTGAIGGSASHEFQVIADSGE
                     DTILYSDGSDYAANVELAEAVAPGERARAGEAMRKIDTPVQKTCEDVAALLGMPLQRT
                     VKSVAVMGRDGAGNDQFVLVLVRGDHVVNEVKLAKLEGLADYRLATEAEILEHLGSEP
                     GFLGPVAPRRPVRIVADRSVAAMHDFVVGANEAGYHLAGVNWGRDLPEPDGVADVRNA
                     VAGDPSPDGKGTLRMARGIEVGHVFALGDRYSRAMQCTVLDANGKAVMPLMGCYGIGV
                     SRIVAAAIEQNHDAAGIVWPQAMAPWQVAVCVINPKNDAAVTAAAEALYRELNAAGID
                     TALDDRGLRPGAMFADIELIGIPHRVVVSERGLAAGTFEYRARTAAESEQLDRAALRA
                     RLGLGG"
     gene            2405..2770
                     /locus_tag="VLM17_08850"
     CDS             2405..2770
                     /locus_tag="VLM17_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010480700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HSR65690.1"
                     /translation="MSIDLAGLSPKELDALINQAKKRKTTLSKRKPIAAVRRKVRALA
                     EAEGYSIAELFGAGAPAAKGGAAKPRTTTAGRKLGKVAARYRNPANPKETWTGRGMQP
                     RWLAAETAKGRKLDEFLIK"
     gene            complement(2850..4100)
                     /locus_tag="VLM17_08855"
     CDS             complement(2850..4100)
                     /locus_tag="VLM17_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006452292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HSR65691.1"
                     /translation="MSQLRHNDTHDYAARQAFVVELAGHLHAYGTTAQRLEGALIAVA
                     SRLGLECEPWSNPTGLILSFSDPARPPGEGETTRVLRLPPGDTHLAKLCAADRIAEDV
                     MAGRMDLAAGHAALRALDRPPGRRARLMSVLAFGLASAAVAGLLRLPWLDIATAGLTG
                     LLIGGLDLLAQRRPQLREAGEAIAALVASFVVVLVASFVGPLNLNTVIIVSLIVLLPG
                     MSLTNAINELTSQHLASGTARFAGALATVMKLTVGTIIALYLSDLLHLAPQVRASRPQ
                     PEVVEWLSLPVAAFSFAVLFRTARRDYPLVMGAAIAGYLVSRLAGTAWGSPVGIFLSA
                     LLLTAAGNAYARWIKRPGALVRVPGILMLVPGSASLRGAMTLMQQQDVAAGQSAALTV
                     LNILLALIAGLLFGNLLVATRRNL"
     gene            4208..5317
                     /locus_tag="VLM17_08860"
     CDS             4208..5317
                     /locus_tag="VLM17_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003475943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65692.1"
                     /translation="MSASTAPSTRFDDAPARLQLAGRWTLAHANAISALLREAPEDVR
                     TVDASGVERLDSVGVLQLLRYARRRGLDFDAFAFRPEHHALVAAIEDVADERPARKRE
                     YGVAAALGRLGYAVADNAREIVALVSFLGENLAKLLRMAQEPRRFRLTATVFHMEQVG
                     LDAVPLVALLSYLIGAVIAFLGANILEDFGATIYVVELVSVAFLREFGVLLTAIVLAG
                     RTASAFTAQIGSMVAREEVDAIRTLGMDPVDLLVMPRLIALVVTLPLLTFIADLAGLL
                     GGLTVGALSLDIQPTAYLARMSDTMHLRHFVVGLAKAPVFAMVIGLIGCLEGLQVKGT
                     AQSVGERTTSSVVQAISLVIVLDAIAAIWFMQMGW"
     gene            5317..6126
                     /locus_tag="VLM17_08865"
     CDS             5317..6126
                     /locus_tag="VLM17_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HSR65693.1"
                     /translation="MATTRDNEAPVIRVRGLVNRFGEQVVHDGVDLDVRRGEILGVVG
                     GSGSGKSVLMRSIIGLRTPDAGEIEVLGVDARSADPETRLHIERNSGVLFQDGALFSS
                     LTVGENVQVPLKEHHPDLPDSLRYELALLKVKLAGLPADAIDKLPAQLSGGMRKRAGL
                     ARALALDPPLLFLDEPTAGLDPIGAAAFDHLIRTLQQALGLTVFLITHDLDTLYAICD
                     RVAVLADRRVIAVAPVAELEKLDHPWVQEYFNGPRGRAARDCRGELGTTGA"
     gene            6128..>6445
                     /locus_tag="VLM17_08870"
     CDS             6128..>6445
                     /locus_tag="VLM17_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HSR65694.1"
                     /translation="METKANYVLIGAFTLATTAALLLFGLWAAKYSSERSWQDYQVIF
                     TEPVTGLTEGSSVQYNGIGVGTVETLDLDPRDPRRVVARLKLKAEIPVKVDTRAKLSI
                     TGLT"
BASE COUNT          965 a         2317 c         2311 g          852 t
ORIGIN      
        1 gacgccgatg gcgacggcaa gccggacaag gtgatgggcg ccgaggaacg cgcgaagcag
       61 acgcaggtcg cgcagcggga cgtcgccagc tggtgcgggc gcggcaacgc cacgccgtga
      121 gggcgggctg ggccatcgcg ggcggcctcg cgctgggcat cggcctggcg tggtggctgg
      181 cgcgcgatcc ggcggccgac cgccgccgcg ccgagcgtgc cggacgcgcc ggcaccgcgc
      241 aggcgatcga cgcgcgtcgc gacctctacc gctggcatga cgccgccggc gtgctgcacg
      301 tcagcgacac gccgcccaag ggcgtccacg ccgaacgcgt cgcccgcgaa ccgcgcaccg
      361 gcatcgaagt ccacggcgac cgctgagccg gggccagggc atcgccgacc gccggcggtc
      421 ggatgaccgc gcgcaatgca tcgagtcgcg tccggcggct tttttccgag cgccacgtcc
      481 gccaccgggt ccggccacgc ccgccgcgcg tggcagaatg cccgctttcc cccgcgaaac
      541 cgcccgatgc gcctgtcgca attccacctc cataccagca aggaaacccc ggccgaggcg
      601 gagatcgcca gccaccagct gatgctgcgc gccggcatgc tgcgcaagct cgccgccggc
      661 ctctacacct ggtcgccgct gggcctgcgc gtgctgcgca aggtcgaggc ggtggtgcgc
      721 gaggagatgg atcgcgccgg cgcgatcgag ctgctgatgc cgaccatcca gccgcaggaa
      781 ctgtgggagg aaaccgggcg ctggcagaag ttcggcgggc agctgctgaa gatcaaggac
      841 cgcaaggaag ccggctactg ctacggccct accgcggagg aagtgatcac cgacttcgcc
      901 cgcaacgagc tggccagcta caagcagctg ccggtcaact tctacaacat ccagaccaag
      961 ttccgcgacg agatccgccc gcgcttcggc gtgatgcgcg cgcgcgaatt cctgatgaag
     1021 gacgcgtact ccttccacct cgacgacgca tcgctcgccg tcgagtaccg caacatgtac
     1081 gacacctacg gccgcatctt cacccgcctc gggctggagc accgcgcggt cgccgccgac
     1141 accggcgcga tcggcggcag cgcctcgcac gagttccagg tgatcgccga ttcgggcgag
     1201 gacacgatcc tgtactcgga cggttccgac tacgcggcga acgtggaact cgccgaggcg
     1261 gtcgcgcccg gcgagcgagc gcgcgcgggc gaggcgatgc gcaagatcga caccccggtg
     1321 cagaagacct gcgaggacgt cgccgcgctg ctgggcatgc cgctgcagcg cacggtcaag
     1381 tcggtcgcgg tgatgggccg cgacggcgcg ggcaacgacc agttcgtgct ggtgctggtt
     1441 cgcggggacc acgtggtcaa cgaggtcaag ctggccaagc tggaagggct ggccgactac
     1501 cgcctcgcca ccgaggccga gatcctcgaa cacctcggca gcgagcccgg cttcctcggg
     1561 ccggtcgctc cgcgcaggcc ggtccgcatc gtcgccgacc gcagcgtcgc cgcgatgcat
     1621 gacttcgtgg tcggcgccaa cgaggccggc taccacctcg ccggggtcaa ctggggccgc
     1681 gacctgcccg aacccgacgg cgtggccgac gtgcgcaacg cggtcgccgg cgacccctcg
     1741 cccgacggca agggcacgct gcggatggcg cgcggcatcg aggtcggcca tgtgttcgcg
     1801 ctcggcgacc ggtactcgcg ggcgatgcag tgcaccgtgc tcgacgccaa cggcaaggcg
     1861 gtgatgccgc tgatgggctg ctacggcatc ggcgtgtcgc gcatcgtcgc cgcggcgatc
     1921 gaacagaacc acgatgccgc cggcatcgtc tggccgcagg cgatggcgcc gtggcaggtc
     1981 gccgtgtgcg tgatcaatcc gaagaacgac gcggcggtga ccgcggcggc cgaggcgctc
     2041 taccgcgagc tcaacgccgc cggcatcgac actgcgctgg acgaccgcgg cctgcgcccg
     2101 ggcgcgatgt tcgccgacat cgagctgatc ggcatcccgc atcgcgtggt ggtgtccgaa
     2161 cgcggcctgg ccgccggcac cttcgaatac cgcgcgcgca ctgccgccga gtccgagcag
     2221 ctcgaccggg cggcgttgcg ggccaggctc gggctggggg ggtgaccggg ccgccgggac
     2281 atccacccgg cgttcgtgca cgcccgtcca cgcgtcccgg ctggatcccg gcgatggatt
     2341 atcatcgcgc gctccggcga gcccggacgc tgcttcctcc ccttccgttg caacggagtc
     2401 gcccatgtcc atcgacctcg ccggcctctc gccgaaggaa ctcgacgccc tgatcaacca
     2461 ggcgaagaag cgcaagacca cgctcagcaa gcgcaagccg atcgccgcgg tgcgccggaa
     2521 ggtgcgcgcg ctggcggagg cggagggcta ttcgatcgcc gagctgttcg gcgcaggcgc
     2581 gccggcggcg aagggcggcg cggccaagcc gcgcacgacc accgccggcc gcaagctcgg
     2641 caaggtggcg gcgcgctacc gcaacccggc caacccgaag gaaacctgga ccggccgcgg
     2701 catgcagccg cgctggctgg cggcggaaac cgccaagggc cgcaagctgg acgaattcct
     2761 gatcaagtga gcgcgggttt gcgcgccatg gaaagccgtc cgcgtggcgg ctttttcatt
     2821 tgcgcgcggc cgggcgtggc cgggccgctt cacaggttcc gtcgggtcgc caccagcagg
     2881 ttgccgaaca gcaggccggc gatcagcgcg agcaggatgt tgagcacggt cagcgcggcg
     2941 ctctgccccg ccgccacgtc ctgctgctgc atcagggtca tcgcgccgcg caggctggcg
     3001 ctgccgggca ccagcatcag gatgccgggc acccgcacca gtgcaccggg ccgcttgatc
     3061 cagcgcgcgt acgcgttgcc ggcggcggtg agcagcagcg ccgacaggaa gatgccaacc
     3121 gggctgcccc atgccgtgcc ggccaggcgc gacaccaggt aaccggcgat cgccgcgccc
     3181 atcaccagcg ggtagtcgcg gcgcgcggtg cggaacagca ccgcgaagga aaacgccgcc
     3241 accggcagcg acagccattc gaccacctcc ggctgcggcc gtgacgcgcg cacctgcgga
     3301 gcgaggtgca gcaggtcgga caggtacagc gcgatgatcg tgccgacggt gagcttcatc
     3361 accgtcgcca gcgcgccggc gaagcgcgcg gtgccggagg cgaggtgctg gctggtcagc
     3421 tcgttgatcg cgttggtcag gctcatgccc ggcagcagca cgatcagcga cacgatgatc
     3481 accgtattga ggttgagcgg gccgacgaag ctcgccacca gcaccacgac gaacgacgcg
     3541 accagcgccg cgatcgcctc gccggcctcg cgcagctgcg ggcgccgctg cgcgagcagg
     3601 tcgaggccgc cgatcagcag gccggtcagg ccggcggtgg cgatgtccag ccacggcagg
     3661 cgcagcaggc cggcgaccgc cgccgaggcg aggccgaagg ccagcaccga catcagccgc
     3721 gcgcgccgcc ccggcggccg gtcgagcgcg cgcagcgcgg cgtggcccgc ggcgaggtcc
     3781 atgcggccgg ccatcacgtc ctcggcgatg cggtcggcgg cgcacagctt ggcgaggtgg
     3841 gtgtcgcccg gaggcaggcg caggacgcgg gtggtctcgc cctcgcccgg cggcctggcc
     3901 ggatcgctga agctgaggat cagcccggtg gggttcgacc atggctcgca ctcgaggccc
     3961 agccgcgagg ccaccgcgat caacgcgcct tcgagccgct gcgcggtggt cccgtaggca
     4021 tgcaggtgcc cggcgagctc gaccacgaag gcctggcgcg ccgcgtagtc gtgggtgtcg
     4081 ttgtggcgga gctgcgacat gcgccaagca tcgcatgcgc cgccgcatgg tggcgcgcgc
     4141 ctgcacgcca tcgcgacggg ccgcgcgggc acggtatgct cgccacagct tcgacgcctg
     4201 cctccgcatg agcgccagca ccgccccgag cacccgcttc gacgacgcac ccgcacggct
     4261 gcagctggcc ggccgctgga cgctcgcgca cgccaatgcg atctcggcgc tgctgcgcga
     4321 agcgccggag gacgtgcgca cggtcgacgc gagcggcgtc gagcgcctgg attcggtcgg
     4381 cgtgctgcaa ctgctgcgct acgcgcgccg gcgcgggctc gacttcgatg cgttcgcgtt
     4441 ccggcccgag caccatgcac tggtggcggc gatcgaggac gtcgccgacg agcgcccggc
     4501 gcgcaagcgc gaatacggcg tggcagccgc gctcggccgg ctcggctacg cggtggcgga
     4561 caacgcgcgc gagatcgtcg cgctggtcag cttcctgggc gagaacctcg ccaagctgct
     4621 gcgcatggcg caggaaccgc gccgcttccg cctcaccgcc accgtcttcc acatggaaca
     4681 ggtcgggctc gacgcggtgc cgctggtggc gctgctgtcc tacctgatcg gcgcggtgat
     4741 cgccttcctc ggcgccaaca tcctcgagga cttcggcgcg accatctacg tggtcgagct
     4801 ggtctccgtc gccttcctgc gcgaattcgg cgtgctgctc accgcgatcg tgctggccgg
     4861 acgcaccgcg agcgcgttca ccgcgcagat cggctcgatg gtcgcgcgcg aggaggtgga
     4921 cgcgatccgc acgctcggca tggacccggt cgacctgctg gtcatgccgc gcctgatcgc
     4981 gctggtggtg acgctgccgc tgctcacctt catcgccgac ctcgccggcc tgctcggcgg
     5041 cctcaccgtc ggcgcgctca gcctcgacat ccagcccacc gcctacctcg cgcgcatgtc
     5101 ggacacgatg cacctgcgcc atttcgtggt ggggctggcg aaggcgccgg tgttcgcgat
     5161 ggtgatcggg ctgatcggct gcctggaagg gctgcaggtc aagggcaccg cgcagtcggt
     5221 cggcgagcgc acgacctcca gcgtggtgca ggcgatctcg ctggtgatcg tgctggacgc
     5281 gatcgcggcg atctggttca tgcagatggg ctggtgatgg cgacgacgcg cgacaacgag
     5341 gccccggtga tccgcgtgcg cgggctggtc aaccgcttcg gcgaacaggt cgtgcacgac
     5401 ggcgtcgacc tcgacgtgcg ccgcggcgag atcctcggcg tggtcggcgg ctcgggcagc
     5461 ggcaagtccg tgctgatgcg ctcgatcatc ggcctgcgca cgccggacgc cggcgagatc
     5521 gaggtgctag gcgtcgacgc gcggtccgcc gatccggaga cccgcctgca catcgagcgc
     5581 aacagcggcg tgctgttcca ggacggcgcg ctgttttcct cgctcaccgt cggcgagaac
     5641 gtgcaggtgc cgctcaagga acaccacccc gacctgccgg actcgctgcg ctacgagctc
     5701 gcgctgctga aggtgaagct cgccggcctg ccggcggacg cgatcgacaa gctgccggcg
     5761 cagctctccg gcggcatgcg caagcgcgcg gggctggcgc gcgcgctcgc gctggacccg
     5821 ccgctgctgt tcctcgacga gcccaccgcc gggctcgacc cgatcggcgc ggcggccttc
     5881 gaccacctga tccgcacgct gcagcaggcg ctcgggctga ccgtgttcct catcacccac
     5941 gacctcgaca ccctgtacgc tatctgcgat cgcgtggcgg tgctggccga ccgcagggtg
     6001 atcgcggtgg cgcccgtggc ggagctggag aagctcgacc atccgtgggt gcaggagtac
     6061 ttcaacgggc cgcgcggccg cgccgcgcgc gactgccgcg gcgaactggg caccaccgga
     6121 gcctgagatg gaaaccaagg ccaactacgt cctgatcggc gcgttcaccc tcgccaccac
     6181 cgcggcgctg ctgctgttcg gcctgtgggc ggccaagtac tcctccgagc gcagctggca
     6241 ggactaccag gtgatcttca ccgagccggt gaccggcctc accgaaggca gctcggtgca
     6301 gtacaacggc atcggggtcg gcacggtgga gacgctcgac ctcgatccgc gcgatccgcg
     6361 ccgcgtggtc gcccggctga agctgaaggc cgagatcccg gtgaaggtgg acacgcgcgc
     6421 caagctgtcg atcaccggcc tcacc
//
LOCUS       DATIQC010000411         3182 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_450561, whole genome shotgun sequence.
ACCESSION   DATIQC010000411 DATIQC010000000
VERSION     DATIQC010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450561"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VLM17_08875"
     CDS             complement(<1..353)
                     /locus_tag="VLM17_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR65695.1"
                     /translation="MTSKNTICLWYDGTALDAATFYARTFPDSAVGAVHLAPGDYPDG
                     RQGDVLTVEFTVMGVPCLGLNGGPAFHHTEAFSFQVATDDQEETDRLWNAIVGNGGQE
                     SACGWCKDKWGLSWQ"
     gene            complement(449..895)
                     /locus_tag="VLM17_08880"
     CDS             complement(449..895)
                     /locus_tag="VLM17_08880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HSR65696.1"
                     /translation="MPSHTVRLHRVLRAPAGRVYRAFLDPAALAKWLPPNGFTGTVHE
                     LDARVGGRYRMSFTHFGTGHAHAFGGTYLELEQDRRIRHDDRFDDPDLPGTMVTTIEL
                     TPLPVGTEVRIVQEGIPAAIPVEQCYLGWQESLVLLGKLVEAEIPG"
     gene            complement(1132..2373)
                     /locus_tag="VLM17_08885"
     CDS             complement(1132..2373)
                     /locus_tag="VLM17_08885"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FG-GAP-like repeat-containing protein"
                     /protein_id="HSR65697.1"
                     /translation="MALVPGLLAPALACAANHNVTANADMTFTPSTLGIAAGDTVTFH
                     NNGGFHNVTSDPGSVTMFRCANGCDGAGGNGNPSTSLWTSVVTFPTPGTVGFFCEIHG
                     GAGGIGMSGKLTITGIIKFTHSCDFNDDGHSDILWRNTGTGANAIWRSANSATQQAVT
                     SVANLSWAVVGAGDFNGDGHSDVLWRNGSTGADVTWRSASSAAQQVLTSVTNLAWKVV
                     GTADYNGDGRADILWRNDATGANAIWRSASSAAQQPTTGVTNLSWTVVGSGDYNGDGR
                     ADILWRNTSTGANAIWRSASSSTQQAVTGVVNLAWTVVGSGDYNGDGRADILWRNTTT
                     GANVIWRSASSAAQQALPAVATEWKVVASGDYNGDERADILWRNTSTGANAVWFSGNP
                     ATKQTLTPVTNLAWTVVGGRD"
     gene            2754..>3182
                     /locus_tag="VLM17_08890"
     CDS             2754..>3182
                     /locus_tag="VLM17_08890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018974874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase N-terminal
                     domain-containing protein"
                     /protein_id="HSR65698.1"
                     /translation="MTVLSAALAFAAGGAGAADVATPAPDFLASHLDTAVDPGVDFFE
                     YANGGWLKAHPIPASEAAWGIGNEVDDELYARLRGISESAAAKPQAPGSDQQKIGDFW
                     ATAMDVARADRLGVHPLDAELSRIDAIRSKGDVLDTVFAFK"
BASE COUNT          397 a         1080 c         1199 g          506 t
ORIGIN      
        1 atctgccacg acaggcccca cttgtccttg caccagccgc aggcgctttc ctgcccgccg
       61 ttgccgacga tcgcgttcca caggcggtcg gtctcctcct ggtcgtcggt cgccacctgg
      121 aacgagaacg cctcggtgtg atggaaggcc gggccgccgt tgaggccgag gcacgggacg
      181 cccatgacgg tgaactcgac ggtcagcacg tcgccctgcc tgccgtcggg gtagtcgccc
      241 ggcgccaggt gcaccgcgcc caccgcgctg tcgggaaagg tcctggcgta gaacgtcgcg
      301 gcgtcgagcg cggtgccgtc gtaccagagg cagatcgtgt tcttgctggt catcgtgttc
      361 tcctgggcaa tgcgggttgc gtcgtccggg cagacgacgg ccgcacccgg cgtcggggtg
      421 cactgcgcct gcgcgggccg tgcgcggttc aaccggggat ttcggcttcg accagcttgc
      481 ccagcagcac cagcgattcc tgccagccga ggtagcactg ctcgacgggg atggccgcgg
      541 ggatgccctc ctgcacgatc cgcacctcgg tgccgaccgg gagcggcgtg agctcgatgg
      601 tggtgaccat cgtgcccggc aggtcgggat cgtcgaagcg gtcgtcgtgg cggatgcgcc
      661 ggtcctgctc gagttcgagg taggtgccgc cgaaggcgtg cgcgtggccg gtgccgaagt
      721 gggtgaagct catgcggtag cggccgccga cgcgcgcgtc gagctcgtgc accgtgccgg
      781 tgaagccgtt cggcggcagc cacttggcca gcgcggccgg atcgaggaag gcgcggtaga
      841 cgcgaccggc gggcgcgcgc aggacgcggt ggaggcggac ggtgtggctc ggcatggtcg
      901 gggtacccgt ggtggaggag tcttcttccc tgcgacggtt gaagggagcg gaattcgaca
      961 cgccgggcag catgccggcg gccgctgcga tggtggcggc aacgaccggc ggacggaacg
     1021 atgggcccgg ccggtcgacg cggatccacg gcgccgcctc gcgcaccggg cgcggggcgc
     1081 gtgttcgatc ggccgggaag ctgccggtgc gcgatccggc cgtgtcgccg tctagtcgcg
     1141 gccgcccacc accgtccacg ccaggttcgt caccggcgtc agcgtctgct tggtcgccgg
     1201 attgccggag aaccagaccg cgttcgcgcc ggtgctggtg ttgcgccaga ggatgtcggc
     1261 gcgctcgtcg ccgttgtagt cgcccgaggc cacgaccttc cactcggtgg ccaccgcggg
     1321 caatgcctgc tgcgcggccg aactggccga gcgccagatc acgttggcgc cggtggtggt
     1381 gttgcgccac aggatgtcgg cgcggccatc gccgttgtag tcgccggagc cgaccacggt
     1441 ccacgccagg ttgaccacgc cggtcacggc ctgctgggtg gacgaactgg ccgatcgcca
     1501 gatcgcattg gcgccggtgc tggtgttgcg ccagaggatg tcggcgcggc cgtcgccgtt
     1561 gtagtcgccc gaaccgacca ccgtccacga caggttggtc acgccggtcg tgggttgctg
     1621 cgcggcggaa ctggccgatc gccagatcgc attggcgccg gtggcgtcgt tgcgccacag
     1681 gatgtcggcg cggccgtcgc cgttgtagtc ggcggtcccg accaccttcc aggcgaggtt
     1741 ggtcacgctg gtcagcacct gctgcgcggc cgaactggcc gagcgccagg tcacgtcggc
     1801 accggtgctg ccgttgcgcc agaggacgtc cgagtggccg tcgccgttga agtcgccggc
     1861 gccgaccacc gcccacgaca ggttggccac gctcgtcacc gcctgctggg tggcggagtt
     1921 cgccgagcgc cagatcgcgt tggcgccggt gcccgtgttg cgccacagga tgtccgagtg
     1981 gccgtcgtcg ttgaagtcgc agctgtgcgt gaacttgatg atgccggtga tcgtgagctt
     2041 gcccgacatg ccgatgccgc cggcgccgcc gtggatctcg cagaagaagc cgacggtgcc
     2101 cggggtgggg aaggtcacca ccgacgtcca cagggacgtg ctggggttgc cgttgccacc
     2161 ggcgccgtcg cagccgttgg cgcaacggaa catcgtgacc gatcccggat cggaggtgac
     2221 gttgtggaac ccgccgttgt tgtggaaggt caccgtgtcg ccggcggcga tgccgagggt
     2281 gctcggcgtg aaggtcatgt ccgcgttggc cgtcacgttg tggttggcgg cgcaggccag
     2341 cgccggggcc agcaggccgg gcacgagggc catccagcgg ccgggccgcg ggcggtcgcc
     2401 gccggcgcgg tcgtttccag cggcgcgggt cctgccgccg gacgcgggcg gcaggaggat
     2461 cacggtggtt ttcggctccg cttgcatggc gcacctcggt ggtggggcat cgggacggcg
     2521 cctgccgttg cggcgcggat ggcggcccgg ccattcgcgc cgcccgtgcc ggcaggcgcc
     2581 ctgcggtgga tgcgcggccg gccggctttg gttcacgccc tgccgggtcc gtggagaccg
     2641 gtgggtgccg tcatgacctc caacgcttgc cgcgcaccgc cgcggccggc acagttcccg
     2701 ccccgatgtc cgtttccgag tgccgcccga tggtccggtt cgccgccctc cgcatgaccg
     2761 tgctttccgc cgcgctggct ttcgccgcgg gcggcgccgg agccgccgat gtcgccacgc
     2821 cggcgccgga cttcctcgcc tcccacctgg acaccgcggt cgatccgggc gtggatttct
     2881 tcgagtacgc caacggcggc tggctgaagg cgcacccgat ccccgcctcc gaggccgcct
     2941 ggggcatcgg caacgaggtc gacgacgagt tgtacgcgcg cctgcgcggc atcagcgagt
     3001 cggccgcggc caagccgcag gcgcccggca gcgaccagca gaagatcggc gatttctggg
     3061 ccacggccat ggacgtcgcc cgggccgacc ggctcggcgt gcatccgctc gatgcggagc
     3121 tctcgcgcat cgacgcgatc cgctcgaagg gcgacgtgct cgacaccgtg ttcgcgttca
     3181 ag
//
LOCUS       DATIQC010000412         2430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_698475, whole genome shotgun sequence.
ACCESSION   DATIQC010000412 DATIQC010000000
VERSION     DATIQC010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_698475"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..355)
                     /locus_tag="VLM17_08895"
     CDS             complement(<1..355)
                     /locus_tag="VLM17_08895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65699.1"
                     /translation="MNAYGIAAIYRFEMARTFRTLMQSIASPVLSTSLYFVVFGAAIG
                     SRMGQVDGVSYGAFIIPGLLMLSLLNESISNASFGIYMPKWAGTIYELLSAPVSWVDV
                     VLGYVGAAASKSVMLG"
     gene            complement(367..1341)
                     /locus_tag="VLM17_08900"
     CDS             complement(367..1341)
                     /locus_tag="VLM17_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010367233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR65700.1"
                     /translation="MPHGDPIVSIRNVSKTYASGFHALKDVSLDIRRGEIFALLGPNG
                     AGKTTLINIVCGIVNASAGTVVADGHDIVREARAARMKIGLVPQELSTDAFESVWATT
                     RFSRGLFGRPPDPAHLEKVLRALSLWDKRDSRIMALSGGMKRRVLIAKALSHEPAILF
                     LDEPTAGVDVELRRDMWQMVRELRQRGVTIILTTHYIEEAEEMADRIGVINHGELVVV
                     EDKHVLMRKLGRKQLTLQLQAPLDRIPDALAGEPLELADDGHALVYTFDTQAERTGIA
                     TLLRLLGEHGIGFKDLHSSESSLEDIFVSLVHSGQRANEATTTKEVRA"
     gene            complement(1362..2336)
                     /locus_tag="VLM17_08905"
     CDS             complement(1362..2336)
                     /locus_tag="VLM17_08905"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HSR65701.1"
                     /translation="MRAIEYSRFGPPRQVLRCVEVPTPEPGAGEVLLRVHAASVNALD
                     WRLMLGRPRIARLFARRARGAGGAIRSGVDVAGVVEATGAGVTRFRAGDAVFGACRGA
                     FADYACAAEDRLAAKPAHVGFAEAAAVPVAATTALQGLRDRGRLRPGQQVLIDGASGG
                     VGTFAVQVAKALGAEVTAVCSARNVATARALGADHVIDYTREDFARDARRYDLVFAAN
                     AHRPLSDYRRVLRPGGVHVMAGGGMRQILQAFLLAPLLSRLGRRRSVLLMAKSVRADL
                     DTLAGMLASGALHPVIARRYPLEAAAEAVALVADGHAQGKVVVEPVQE"
BASE COUNT          336 a          873 c          884 g          337 t
ORIGIN      
        1 cgccgagcat caccgacttg ctcgccgccg cgccgacgta gccgagcacg acgtcgaccc
       61 atgacaccgg cgccgacagc agttcgtaga tcgtgccggc ccacttgggc atgtagatgc
      121 cgaacgatgc gttggagatg ctctcgttga gcagcgacag catcagcagg ccggggatga
      181 tgaaggcgcc gtagctgacg ccatcgacct ggcccatgcg cgacccgatc gccgcgccga
      241 acaccacgaa gtacagcgag gtcgacagca ccggcgaggc gatgctctgc atcagggtgc
      301 ggaaggtgcg cgccatctcg aagcggtaga tcgcggcgat gccgtacgcg ttgatcgcgc
      361 gtgcgttcat gcgcgcacct ccttggtcgt ggtcgcctcg ttcgcgcgct gcccggaatg
      421 gaccaggctg acgaagatgt cctcgagcga actctcgctc gaatgcaggt ccttgaagcc
      481 gatgccgtgc tcgccgagga ggcgcagcag cgtcgcgatg ccggtgcgct ccgcctgcgt
      541 gtcgaaggtg tagaccaggg cgtggccgtc gtcggcgagc tccagcggct cgccggccag
      601 ggcgtcggga atgcggtcga gcggcgcctg cagctgcagg gtcagctgct tgcggccgag
      661 cttgcgcatc agcacgtgct tgtcttcgac cacgaccagc tcgccgtggt tgatgacgcc
      721 gatgcggtcg gccatctcct cggcctcctc gatgtaatgc gtcgtcagga tgatggtgac
      781 gccgcgctgg cgcagctccc gcaccatctg ccacatgtcg cggcgcagct cgacgtcgac
      841 gccggcggtg ggctcgtcga ggaacaggat cgccggctcg tgcgaaagcg ccttggcgat
      901 cagcacccgc cgcttcatgc cgcccgacag cgccatgatc ctgctgtcgc gcttgtccca
      961 cagcgacagc gcgcgcagga ccttttccag gtgcgccggg tcgggcggtc gcccgaacag
     1021 gccgcggctg aagcgcgtcg tcgcccacac gctctcgaac gcgtcggtcg acagctcctg
     1081 cggcaccagc ccgatcttca tgcgcgcggc gcgcgcctcg cgcacgatgt cgtggccgtc
     1141 ggcgacgacc gtgccggcgc tcgcgttgac gatgccgcag acgatgttga tgagggtggt
     1201 cttgccggcg ccgttcggtc cgagcagcgc gaagatctcg ccgcggcgga tgtcgaggct
     1261 gacgtccttc agcgcgtgga agccggacgc gtaggtcttg ctcacgttcc ggatcgagac
     1321 gatggggtcg ccgtgcggca tgcgcgtgtc ctcgggtcga ttcactcttg cacgggctcg
     1381 acgacgacct tgccctgggc atggccgtcc gcgacgaggg cgacggcctc cgccgccgct
     1441 tccagcgggt agcggcgcgc gatcaccggg tgcagcgcgc ccgaggccag catgccggcg
     1501 agcgtgtcca ggtcggcgcg cacgctcttc gccatcagca gcacgcttcg gcgccggccc
     1561 aggcgcgaga gcagcggcgc cagcaggaag gcctgcagga tctggcgcat gccgccgccg
     1621 gccatcacgt gcacgccgcc cgggcgcagc acgcgccggt agtcggacag cgggcggtgc
     1681 gcgttggccg cgaacacgag gtcgtagcgg cgcgcgtcgc gcgcgaagtc ctcgcgggtg
     1741 tagtcgatga catggtccgc tccgagcgcg cgggcggtgg cgacgttgcg ggcgctgcac
     1801 acggcggtga cctccgcgcc gagcgccttg gcgacctgca cggcgaaggt gccgacgccg
     1861 ccggacgcgc cgtcgatgag cacctgctgg cctgggcgga ggcggccgcg gtcgcgcagg
     1921 ccctgcaacg ccgtcgtcgc cgcgaccggc acggcggcgg cttcggcgaa gccgacatgc
     1981 gcgggcttcg ccgccagccg gtcctcggcg gcgcacgcgt aatcggcgaa ggcgccgcgg
     2041 caggcgccga acaccgcgtc gccggcgcgg aaacgggtga cgccggcgcc ggtcgcctcg
     2101 accacgcccg cgacgtcgac gccgctccgg atcgcaccgc cagccccgcg cgcgcggcgc
     2161 gcgaacagcc gcgcgatccg cggcctgccc agcatcagcc gccagtcgag cgcgttgacc
     2221 gacgcggcgt gcacgcgcag caggacctcg cccgcgcccg gctccggcgt cgggacctcg
     2281 acgcagcgca gcacctgccg cggcgggccg aaccggctgt attcgatggc gcgcatggac
     2341 ggcctccggc gtggtcgccc gcccagccta gcgcggcgtc gccgcgaccg ggcggggcgc
     2401 gggcgtcagc cgcgccgcgc ggcctcgatc
//
LOCUS       DATIQC010000413         2894 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_27383, whole genome shotgun sequence.
ACCESSION   DATIQC010000413 DATIQC010000000
VERSION     DATIQC010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27383"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..230)
                     /locus_tag="VLM17_08910"
     CDS             complement(<1..230)
                     /locus_tag="VLM17_08910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65702.1"
                     /translation="MEMPRPGPAHERLRRLVGDWSGPERLSPSPWGPGGAATGHFGCR
                     EALGGMALLQDYREEKDGAPAFAGHGVVVVEPG"
     gene            complement(293..478)
                     /locus_tag="VLM17_08915"
     CDS             complement(293..478)
                     /locus_tag="VLM17_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007809261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65703.1"
                     /translation="MPRGDKSSYTDKQKRQASHIESSEKKEGRSEKDAERIAWATVNK
                     QDHGGKKSGSGRHSHDG"
     gene            635..1060
                     /locus_tag="VLM17_08920"
     CDS             635..1060
                     /locus_tag="VLM17_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HSR65704.1"
                     /translation="MAMHPDPRPPASDPPASDPALDLADAQLRKFQKELSAGTVSLAL
                     LAVVGAAAEPMYGYQIAKRLADVGDGVLAGKQSALYPVLRNLEAAGLLASHVEPSVAG
                     PPRRYYRITDDGRTVLPQWTAAWRGTRDSLDSVLQGPRP"
     gene            1057..1977
                     /locus_tag="VLM17_08925"
     CDS             1057..1977
                     /locus_tag="VLM17_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007965594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing protein"
                     /protein_id="HSR65705.1"
                     /translation="MNAAHPNTLLPTTIPAYLDQLRAALAGSDPALVQDALYDAEEYL
                     RSELAENPGRSEAEVIAAVAGSYGNPAEVADIYRDTEVRVQTALRPPAPPPRGSALGR
                     FFGVIAEPRTYGALFYMLLALATGIFYFTWVVTGLSLSLGLAVLIIGVPFVVLYFGSV
                     RMLSLVEGRIVEVMLGERMPRRPLYAARGMPWLQRIGAMFTDPRTWTAQLYFALMLPL
                     GIVYFTLVVTLLAVSAGCIAAPFAAMFGDTGWIQLDGITVAGGPFWTWPLWSAAGVLL
                     LFATLHLARGIGHLHAQLAKHLLVKSAQYG"
     gene            complement(2016..>2894)
                     /locus_tag="VLM17_08930"
     CDS             complement(2016..>2894)
                     /locus_tag="VLM17_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HSR65706.1"
                     /translation="LGLADRAWQNALRYSRERLQMRSLSGPKNPDKPADPIIVHPDVR
                     RMLLTQKALVEGGRVLGYHAASLVDIAAHGATEEERAQAEALLGFVTPIVKACLTEWG
                     VECTYDALQCFGGHGYIKEHGIEQLARDARITTLYEGTTGIQALDLVGRKLIAQKGAG
                     LQAMLKLVVEFCDGQSGNAAVAEFIGPLREKLAEWQQLSLRIGQRAAADPEEAGAAAY
                     DYLMYSGYVALAYWWARSVAAAEASGQPDAFRAAKRETARFYFGRLLPRTLAHRAAIE
                     SGAGTLMALDARAFDA"
BASE COUNT          359 a         1068 c         1023 g          444 t
ORIGIN      
        1 ccgggctcga cgacgacgac gccatggccg gcgaaggccg gcgcgccgtc cttctcctcg
       61 cggtagtcct gcagcagggc catgccgccg agcgcctcgc ggcagccgaa atggccggtc
      121 gcggcgccgc cggggcccca cggcgaaggc gagagccgtt cggggcccga ccagtcgccg
      181 accaggcggc gcaggcgttc atgcgcggga ccgggacgtg gcatctccat gcggcgctcc
      241 gtggcaggca ggccgccgag gatacgccag ccgcgcgcgc ggccggggtg ggtcagccgt
      301 cgtgagaatg acggccggag ccggacttct tgccgccgtg gtcctgcttg ttgacggtgg
      361 cccaggcaat ccgctcggcg tccttctcgg agcggccttc cttcttctcg ctggactcga
      421 tgtggctggc ctggcgcttc tgcttgtcgg tgtagctgga cttgtcgccg cgtggcatgg
      481 gcttgctccc ggcccggagg gcgggccgca ggggcacgct agccagcgcg gcgtgcagcc
      541 gccggcaaag cggccgtggc acggccctga ctatcggcac atccgctata ccgaagttcg
      601 tactactgtg gcctccgacc tagccggagg ccgcatggcc atgcatcccg acccgcgtcc
      661 gcccgcgtcc gatccccccg cgtccgaccc cgcgctcgac ctggccgacg cgcagctgcg
      721 caagttccag aaggagctga gcgcgggcac cgtgtcgctg gcgctgctcg ccgtggtcgg
      781 cgccgcggcc gagccgatgt acggctacca gatcgccaag cgcctggccg acgtcggcga
      841 cggcgtgctc gccggcaagc agagcgcgct gtacccggtg ctgcgcaacc tcgaggcggc
      901 ggggctgctg gccagccacg tcgaaccctc ggtggccggg cccccgcgcc gctactaccg
      961 catcaccgac gacggccgca ccgtcctgcc gcagtggacc gccgcctggc gcggcacccg
     1021 tgattccctc gattccgtcc tgcaagggcc ccgtccatga acgccgcgca cccgaacacc
     1081 ctgctgccga ccaccattcc ggcctacctc gaccagctgc gcgcggcgct cgccggcagc
     1141 gacccggcgc tggtgcagga cgcgctgtac gacgccgagg aatacctgcg ctcggaactc
     1201 gccgagaacc ccggccgctc cgaggcggag gtcatcgccg cggtcgccgg cagctacggc
     1261 aacccggccg aagtggccga catctaccgg gacaccgagg tccgcgtgca gaccgcgctg
     1321 cgtccgccgg cgccgccgcc gcgcggctcc gcgctcggcc gcttcttcgg cgtgatcgcc
     1381 gagccgcgca cctacggcgc gctgttctac atgctgctgg cgctggcgac cggcatcttc
     1441 tacttcacct gggtggtcac cggcctgtcg ctgtcgctgg gactggcggt gctgatcatc
     1501 ggcgtgccgt tcgtggtgct gtatttcggc tcggtgcgca tgctctcgct ggtcgaaggc
     1561 cgcatcgtcg aggtgatgct gggcgagcgc atgccgcgcc ggccgctcta cgccgcgcgc
     1621 ggcatgccgt ggctgcagcg gatcggggcg atgttcaccg atccgcgcac gtggaccgcg
     1681 cagctgtact tcgcgctgat gctgccgctg ggcatcgtct acttcacgct ggtggtgacg
     1741 ctgctggccg tgtcggccgg ctgcatcgcg gcaccgttcg cggcgatgtt cggcgatacc
     1801 ggctggatcc agctcgacgg gatcacggtc gccggcgggc cgttctggac ctggccgctg
     1861 tggagcgcgg cgggcgtgct gctgctgttc gccacgctgc acctcgcgcg cggcatcggc
     1921 cacctgcacg cgcagctcgc gaagcacctg ctggtgaagt cggcgcagta cgggtaacga
     1981 agcgcacccg ggcgcggcct tcggcctcgc ccgggctacg cgtcgaaggc ccgggcgtcc
     2041 agcgccatca gcgtgccggc gccgctctcg atcgcggcgc ggtgggccag ggtccggggc
     2101 agcaggcggc cgaaatagaa acgcgcggtc tcgcgcttcg cggccctgaa ggcgtcgggc
     2161 tggcccgacg cctccgccgc cgccacgctg cgcgcccacc agtaggcgag cgcgacgtag
     2221 ccggaataca tcaggtagtc gtaggccgcc gcgccggctt cctccggatc ggccgccgcg
     2281 cgctggccga tgcgcaggct gagctgctgc cactcggcga gcttctcgcg cagcgggccg
     2341 atgaactccg ccaccgccgc gttgcccgac tggccgtcgc agaattcgac gaccagcttc
     2401 agcatcgcct gcagccccgc gcccttctgc gcgatcagct tgcggccgac gaggtcgagc
     2461 gcctggatgc cggtggtgcc ctcgtacagc gtcgtgatgc gcgcgtcgcg cgccagctgt
     2521 tcgatcccgt gttccttgat gtagccgtgg ccgccgaagc actgcagcgc gtcgtaggtg
     2581 cattcgacgc cccattcggt caggcaggct ttcacgatcg gcgtcacgaa gcccagcagc
     2641 gcctcggcct gcgcgcgctc ttcctccgtc gcgccgtgcg cggcgatgtc gaccagcgag
     2701 gcggcgtggt agccgagcac tcgcccgccc tcgaccagcg ccttctgggt cagcagcatg
     2761 cgccgcacgt cggggtggac gatgatcgga tcggccggct tgtccggatt cttcgggccg
     2821 gacagcgagc gcatctgcag gcgttcgcgc gagtagcgca gcgcgttctg ccaggcgcga
     2881 tcggcgaggc ccag
//
LOCUS       DATIQC010000414         1836 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_592751, whole genome shotgun sequence.
ACCESSION   DATIQC010000414 DATIQC010000000
VERSION     DATIQC010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592751"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /locus_tag="VLM17_08935"
     CDS             complement(<1..473)
                     /locus_tag="VLM17_08935"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HSR65707.1"
                     /translation="MGDLSPTRLARLHDVLQRHVDTGYTPGIVALVHHRDGTQVEVLG
                     TLDFDGAVPMARDTLFRLASMTKPVTAVAAMILLEECRLRLDDPVDAWLPELANRRVL
                     RRLDGPLDDTVPARRAITLRDLLTFRAGYGEVGLFAPGCPLHQAQVAARLPLVDW"
     gene            579..>1836
                     /locus_tag="VLM17_08940"
     CDS             579..>1836
                     /locus_tag="VLM17_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR65708.1"
                     /translation="MPAHARSVLAAAVLCTLLGLPSLSNAANADVATIKQTIASQHDA
                     NIKRLQDWIALPSIAAENRNAREGAEYMAQLARDAGFQKVEVVQTDGKPGVGKVIVGR
                     GAVNQKGPESAFLAALHAIRDAHQKLPVNLVLVAEGEEEIGSPHIAQLVRRPDVEAAM
                     KKTIGVFMPSATQDLDGSVEISLGAKGVVELELVSSGEKWGRGPKKDVHSSLKAMVDS
                     PAWHLVKALDTLVSEDGNTITIDGYPKAPPISAEDKAMVVAAAKVRSEAEAKQQFGVD
                     HWIGDLPWEQANERLVSQPTVNIEGLVGGYTGPGGKTVLPHRAVAKLDMRLVPGMKKD
                     DAIAALKSHLAKHGFGDIEVNVSGGYDSTQTRADAPLIQAQRAVLERRGIHPLMWPRN
                     AGSYPGFVFTDPPLSLAAGHFGLGQGS"
BASE COUNT          306 a          667 c          639 g          224 t
ORIGIN      
        1 atccagtcga ccagcggcag ccgcgccgcg acctgtgcct ggtgcagcgg gcagcccggc
       61 gcgaacaacc cgacctcgcc gtagcccgcg cggaaggtga gcaggtcgcg cagcgtgatc
      121 gcgcgccgcg cgggcacggt gtcgtcgagc ggcccgtcga gcctgcgcag cacgcggcga
      181 ttggcgagtt ccggcagcca cgcgtcgacc ggatcgtcga gccgcagccg gcactcctcc
      241 aacaggatca tcgccgcgac cgcggtcacc ggcttggtca tcgaggcgag gcggaacagg
      301 gtgtcgcgcg ccatcggcac cgcgccgtcg aagtccagcg tgccgagcac ctcgacctgc
      361 gtgccgtcgc ggtggtgcac cagcgcgacg atgcccggcg tgtagccggt gtccacgtgg
      421 cgctgcagca cgtcgtgcag gcgcgccagg cgggtggggg acaggtcgcc catgccggcg
      481 gtgctcccgg tgcggcggat acccggcaca acgcggcggc tcgatggcgg cggacagggt
      541 cggttaggat cgcgcgacac ccgccatgga gtgaccgcat gcccgcccac gcccgttccg
      601 tcctcgccgc cgccgtgctc tgcacgctgc tcggcctgcc gtcgctgtcg aatgcagcca
      661 acgccgacgt cgcgacgatc aagcaaacca tcgcctcgca gcacgacgcc aacatcaagc
      721 gcctgcagga ctggatcgcg ctgccgtcga tcgccgccga gaaccgcaat gcgcgcgaag
      781 gcgcggagta catggcgcag ctggcgcgcg acgcgggctt ccagaaggtc gaggtcgtgc
      841 agaccgacgg caagcccggc gtcggcaagg tgatcgtcgg ccgcggcgcg gtcaaccaga
      901 agggcccgga gtccgccttc ctcgccgcgc tgcacgccat ccgcgacgcg caccagaagc
      961 tgccggtgaa cctggtgctg gtcgccgaag gcgaggagga gatcggctcg ccgcacatcg
     1021 cccagctcgt gcgccggccc gacgtcgaag ccgcgatgaa gaagaccatc ggcgtcttca
     1081 tgccctcggc cacgcaggac ctcgacggct cggtggagat cagcctcggc gccaagggcg
     1141 tggtcgagct ggagctcgtg tccagcggcg agaagtgggg cagggggccg aagaaggacg
     1201 tgcattcctc gctcaaggcg atggtcgaca gccccgcgtg gcacctcgtc aaggcgctgg
     1261 acacgctggt gtcggaggac ggcaacacca tcaccatcga cggctacccg aaggcgccgc
     1321 cgatcagcgc cgaggacaag gcgatggtcg tcgccgcggc caaggtgcgc agcgaggcgg
     1381 aggccaagca gcagttcggc gtcgaccact ggatcggcga cctgccgtgg gagcaggcca
     1441 acgagcgcct cgtctcgcag ccgacggtga acatcgaagg cctcgtcggc ggctacaccg
     1501 gcccgggcgg caagaccgtg ctgccgcacc gcgccgtcgc caagctcgac atgcgcctcg
     1561 tccccggcat gaagaaggac gacgccatcg ccgcattgaa gtcgcatctc gccaaacacg
     1621 gattcggcga catcgaggtc aacgtcagcg gcggctacga cagcacccag acccgcgccg
     1681 acgcgccgct gatccaggcg cagcgcgccg tgctcgaacg ccgcggcatc catcccctca
     1741 tgtggccgcg caacgccggc tcatacccag gcttcgtctt caccgacccg ccgctcagcc
     1801 tcgccgccgg ccacttcggc ctcggccagg gcagcg
//
LOCUS       DATIQC010000415         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_663473, whole genome shotgun sequence.
ACCESSION   DATIQC010000415 DATIQC010000000
VERSION     DATIQC010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_663473"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /locus_tag="VLM17_08945"
     CDS             complement(<1..255)
                     /locus_tag="VLM17_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010484605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate dehydrogenase/cyclohydrolase
                     catalytic domain-containing protein"
                     /protein_id="HSR65709.1"
                     /translation="MTQPSHPARILDGKRIADALLDDLKARVDARLAAGKPRPGLAVV
                     LVGDDPASAVYVRNKRRAAEKVGIRAIDHDLPADASDAELL"
     gene            complement(331..930)
                     /locus_tag="VLM17_08950"
     CDS             complement(331..930)
                     /locus_tag="VLM17_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HSR65710.1"
                     /translation="MPIVHDRSGRIPSRGRCFLYVFPCGWEDLLKLGISRDPLDRLQA
                     LHPRWFEFFDLDRGHVVEFDRVREARAQELSLGHRLAEHRAVAPLTVRAAAGGHTEWF
                     RGASAQLDEAMQAFAAAGHAVHAPLRPWLREALQARGALLYSWTQAALDADDLAAGDA
                     GLPHRQAVRDALDACDALGVALEPLLPEAVLAWHRGARR"
     gene            1037..>1751
                     /gene="xth"
                     /locus_tag="VLM17_08955"
     CDS             1037..>1751
                     /gene="xth"
                     /locus_tag="VLM17_08955"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007081061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HSR65711.1"
                     /translation="MAQLKIATFNVNGIRSRLQPLLAWLAREQPDVACLQELKAPDEA
                     FPIDAIRAAGYGATWHGQRSWNGVAILARGAEPVESRRGLPGDPDDTHSRYLEAAVHG
                     VIVGCLYLPNGNPQPGPKFDYKLAWFERLIAHAKTLFASGHPVVLCGDYNVVPTDELD
                     IYNARSWKKDALLQPETRECWRRLLAQGWTDALRTLHPDEKVFTFWDYFRQHWDRDAG
                     LRIDHLLLNAAAQPALVVAG"
BASE COUNT          253 a          629 c          653 g          216 t
ORIGIN      
        1 cagcagctcg gcatcggagg cgtcggccgg caggtcatgg tcgatcgccc ggatgccgac
       61 cttctcggcc gcccggcgct tgttgcgcac gtagacggcg gaggccgggt cgtcgccgac
      121 cagcaccacc gccaggcccg gccgcggctt gccggcggcc aggcgcgcgt ccacccgggc
      181 cttcaggtcg tcgagcagcg cgtcggcgat gcgcttgccg tcgaggatgc gggcggggtg
      241 gctgggctgg gtcatgccgt gcggagcggt gcggaagggg cggcattatc gccgatcggg
      301 ccggccggac cggcagtcgt ggcgcgggcg ctagcggcgc gcgccacggt gccaggcgag
      361 cactgcctcg ggcagcagcg gctccagcgc gacgccgagt gcgtcgcagg cgtccagcgc
      421 gtcgcgcacc gcctgccggt gcgggagccc ggcatcgccc gcggcgaggt cgtcggcgtc
      481 cagcgccgcc tgggtccacg aatacaacag cgcgccgcgc gcctgcagcg cctcgcgcag
      541 ccagggccgc aacggggcgt gcaccgcgtg ccccgcggcg gcgaacgcct gcatcgcctc
      601 gtccagctgc gccgaggcgc cgcggaacca ttcggtatgc ccgccggcgg cggcgcgcac
      661 ggtgagcggc gcgacggcgc ggtgctcggc gagacggtgc cccagcgaca actcctgcgc
      721 gcgtgcctcg cgcacccggt cgaactcgac gacatggccg cgatcgaggt cgaagaactc
      781 gaaccagcgc gggtgcagcg cctgcaggcg atcgagcgga tcgcgcgaga tgccgagctt
      841 gagcaggtcc tcccagccgc agggaaagac gtacaggaaa cagcgcccgc ggctgggaat
      901 gcggccggag cggtcgtgga cgatgggcat gcccgcgatg ctggcgccgg cgcgtcgcag
      961 gcggcgtgac gcgctctcac cactcgtgca cgatgcgcca tcgatcctgc cgggcggacg
     1021 aggcgggcag gacgcgatgg cgcagctgaa gatcgccacc ttcaacgtca acgggatccg
     1081 ctcgcggctg cagccgctgc tggcgtggct ggcacgcgag cagcccgacg ttgcctgcct
     1141 gcaggagctg aaggcgccgg acgaggcctt ccccatcgac gcgatccgcg ccgccggtta
     1201 tggcgcgacc tggcacggcc agcgctcgtg gaacggcgtc gccatcctgg cccgcggcgc
     1261 ggaaccggtc gagagccggc gggggctgcc cggcgatccg gacgacaccc acagccgcta
     1321 cctcgaggcc gcggtgcacg gggtgatcgt cggctgcctg tacctgccca acggcaaccc
     1381 gcagccggga ccgaagttcg actacaagct ggcgtggttc gagcgactga tcgcccatgc
     1441 gaagacgctc ttcgccagcg gccacccggt ggtgctgtgc ggcgactaca acgtggtgcc
     1501 gaccgacgag ctcgacatct acaacgcgcg ctcctggaag aaggacgccc tgctgcagcc
     1561 cgaaactcgc gaatgctggc ggcgcctgct cgcgcagggc tggaccgacg ccctgcggac
     1621 gctgcatccg gacgagaagg tcttcacctt ctgggactac ttccgccagc actgggaccg
     1681 cgatgcggga ctgcgcatcg accacctcct gctgaacgcc gcggcgcagc cggcgctggt
     1741 cgtcgccggc g
//
LOCUS       DATIQC010000416         2944 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_557713, whole genome shotgun sequence.
ACCESSION   DATIQC010000416 DATIQC010000000
VERSION     DATIQC010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2944
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_557713"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(16..549)
                     /locus_tag="VLM17_08960"
     CDS             complement(16..549)
                     /locus_tag="VLM17_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007966252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HSR65712.1"
                     /translation="MARGHCILSHGFESGPDATKVTALADVAARMGWTHERPDYTDLD
                     ARREVSELGDVAARLQRLHVLAREAAARGPLVLAGSSLGAWISARVSLQVPVAGLFLL
                     APPVRMGAAPPLEAAQVPISIVHGWEDELIPAAEVVAWAQARRARLLLLDDGHRLSRH
                     VGAGADAFAALLAATRP"
     gene            661..1239
                     /locus_tag="VLM17_08965"
     CDS             661..1239
                     /locus_tag="VLM17_08965"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HSR65713.1"
                     /translation="MHADADPVVHDEPLPYVPQLDRRPPEQVDLVVIHCTELPDLATA
                     REYGERVLYPLSNTGNSGHFYVDRDGSVHRWVGVDCVAHHTRGYNPRSVGVELVNTGR
                     YPDWLDSRRQAMDEPYPQAQVAGLVALLRQLRRELPALRFIAGHEDLDTDEVAASDDH
                     HRKVRRKRDPGPMFPWGDVLAAIDLQRLAPPA"
     gene            1336..2229
                     /gene="tesB"
                     /locus_tag="VLM17_08970"
     CDS             1336..2229
                     /gene="tesB"
                     /locus_tag="VLM17_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0006637 - acyl-CoA metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HSR65714.1"
                     /translation="MPSPVSELIDLLSLERLEDNLFRGQSRDIGTKYVFGGQVLGQAL
                     SAAQATMEKPRDAHSLHAYFLRAGDIEHPIVYTVDRTRDGGSFSVRRVTAIQHGQVIF
                     FCAASFHEDEPGGEHQLSMPEVPMPEDIEPSRPVPSDVFATLPNKVQRWLSRQGPFEF
                     RHVYPRDELNPPKRPPYQQVWFRLGERVGDAPELHRALLAYASDFHLLGTATFPHGIS
                     YYQPNVQMASLDHGLWFHRPFRADEWLLYSIDSPTAQGGRGLARGLIYDRGGRLVAST
                     AQEGLIRVVADAGAAAHVPKA"
     gene            2240..>2944
                     /locus_tag="VLM17_08975"
     CDS             2240..>2944
                     /locus_tag="VLM17_08975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65715.1"
                     /translation="MRQVFSSPRLENVERVAQLLREAGIETRVTHGRSYKGSRRGDFS
                     YRDHTREEPVPAVWIVNSEDQVRGREILRQAGLIDTTRTGSDSFLPASMHRREQERKA
                     DAGERRAFRLKMGLIAVIAIVVVLAFVTQRKTELKSPAVRAVNPALPAGVAPTPDALA
                     VAVLAGELPIRPGQAACLSVDGGDPSASLLVLLAPKTPGAVLPASHCPARGDVPTLAI
                     HDYRPRAGGRAGPITLD"
BASE COUNT          428 a         1112 c         1015 g          389 t
ORIGIN      
        1 agctggcgaa gaatttcatg ggcgggtcgc ggcgagcagc gcggcgaagg cgtccgcgcc
       61 ggcgcccaca tggcgcgaca ggcggtggcc gtcgtcgagc agcagcagtc gcgcgcggcg
      121 cgcctgcgcc caggcgacga cctcggcggc gggaatcagc tcgtcctccc agccgtgcac
      181 gatcgagatc gggacctgcg cggcctcgag cggcggcgcg gcgcccatgc ggaccggcgg
      241 cgcgagcagg aacaacccgg ccaccggcac ctgcagcgac acccgcgcgg aaatccacgc
      301 gccgaggctg gaaccggcga gcaccagcgg gccgcgcgcg gcggcctccc gtgccagcac
      361 gtgcagccgt tgcagccgtg ccgccacgtc gcccagttcg ctgacctcgc gcctcgcgtc
      421 gaggtcggtg taatccggcc gctcgtgcgt ccagcccatg cgcgcggcga cgtccgccag
      481 cgcggtcacc ttggtcgcgt ccggtccgct ctcgaaaccg tgcgagagga tgcagtgccc
      541 gcgcgccatg ctcaggcctc cgcgaaggcg gcgacgcgat gcgcgcgggg tgctgcgcgc
      601 gaaaaaacgg ctggaacggc gaacgacggc ggcatcatcc ggcgatgcta gcatccgcgc
      661 atgcacgccg acgccgaccc cgtggtgcac gacgaacccc tgccctacgt gccgcagctc
      721 gaccggcggc cgcccgaaca ggtcgacctc gtcgtcatcc actgcaccga gctgcccgac
      781 ctcgccaccg cgcgcgagta cggggagcgc gtgctgtatc cgctttcgaa caccggcaac
      841 agcgggcact tctacgtcga ccgcgacggc tccgtccacc gctgggtggg cgtcgactgc
      901 gtcgcccacc acactcgcgg ctacaacccg cgctcggtcg gcgtcgaact ggtcaacacc
      961 ggccgctatc ccgactggct ggactcgcgc cgtcaggcga tggacgaacc gtacccgcag
     1021 gcgcaggtcg ccgggctcgt cgccctgctg cggcagttgc gccgcgaatt gccggcgctg
     1081 cgcttcatcg ccggccacga ggacctggac acggacgaag tcgcggccag cgacgaccac
     1141 caccgcaagg tgcgacgcaa gcgcgacccg gggccgatgt ttccgtgggg cgacgtgctc
     1201 gcggccatcg acctgcagcg gcttgcgccg ccggcgtgat cgcggggccc gctggcgagc
     1261 gcttccgcgc gcgggccggc ggcggcgatc acccgcgccg ggctaaactg cgctgcccca
     1321 cgcgtccgga cgcccatgcc ctcgcccgtt tccgagctca tcgacctgct ctcgctcgag
     1381 cgcctcgagg acaacctgtt ccgcggccag agccgcgaca tcggcaccaa gtacgtgttc
     1441 ggcgggcagg tgctcgggca ggcgctttcg gctgcgcagg cgacgatgga gaagccgcgc
     1501 gacgcgcatt ccctgcacgc ctatttcctg cgcgccggcg acatcgagca tccgatcgtc
     1561 tacaccgtcg accgcacgcg cgacggcggc agcttctccg tgcgccgcgt caccgcgatc
     1621 cagcacggcc aggtgatctt cttctgcgcg gcgtccttcc acgaggacga gcccgggggc
     1681 gagcaccagc tgtcgatgcc ggaagtgccc atgcccgagg acatcgagcc ttcgcggccg
     1741 gtgccctccg acgtcttcgc cacgctgccc aacaaggtgc agcgctggct gtcgcggcag
     1801 gggccgttcg agttccgcca cgtctatccg cgcgacgaac tcaatccgcc caagcgcccg
     1861 ccctaccagc aggtctggtt ccgcctgggc gaacgggtcg gcgacgcacc cgagctgcac
     1921 cgggcgctgc tcgcctacgc ctccgacttc cacctgctcg gcaccgcgac gttcccgcac
     1981 ggcatcagct actaccagcc gaacgtgcag atggcctcgc tcgaccacgg actgtggttc
     2041 caccgcccgt tccgcgcgga cgaatggctg ctttattcga tcgacagccc gaccgcgcag
     2101 ggcgggcgcg gcctcgcccg cggcctgatc tacgaccgcg gcggcaggct cgtcgccagc
     2161 accgcgcagg aaggcctgat ccgcgtggtc gccgacgccg gcgccgcggc gcacgtgccg
     2221 aaggcgtaag gagcagacga tgcgccaggt attttccagt ccgcgcctcg agaacgtcga
     2281 acgcgtcgcg caactgctgc gggaggcggg catcgagacc cgcgtcaccc acgggcgctc
     2341 gtacaagggc agccggcgag gcgacttcag ctaccgggac cacacccgcg aagagccggt
     2401 gccggcggta tggatcgtca attcggaaga ccaggtgcgc gggcgcgaga tcctgcgcca
     2461 ggccggcctg atcgacacca cgcggaccgg ctccgacagc ttcctgccgg cgtcgatgca
     2521 ccggcgcgag caggaacgaa aggccgatgc cggcgagcgc cgcgcgttcc ggctgaagat
     2581 gggcctgatc gcggtgatcg cgatcgtcgt cgtgctcgcg ttcgtcaccc agcggaagac
     2641 cgaattgaag tcgccggcgg tgcgcgcggt gaatccggcg ctgccggccg gcgtcgcgcc
     2701 gacgcccgac gcgctcgccg tcgcggtgct cgccggcgaa ctgccgatcc ggcccgggca
     2761 ggcggcatgc ctgtcggtcg acggcggcga tccgtcggcc tcgctgctcg tgctgctcgc
     2821 gccgaagacg ccgggcgccg tgctgccggc ctcgcattgc ccggcgcgcg gcgacgtgcc
     2881 gacgctcgcc attcacgatt accgcccgcg cgccggtggc cgggcgggtc cgatcaccct
     2941 cgat
//
LOCUS       DATIQC010000417         5088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_204405, whole genome shotgun sequence.
ACCESSION   DATIQC010000417 DATIQC010000000
VERSION     DATIQC010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5088
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204405"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VLM17_08980"
     CDS             complement(<1..316)
                     /locus_tag="VLM17_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR65716.1"
                     /translation="MHSRALDTLRHVFGYDAFRGVQGEIVEHVASGGDALVLMPTGGG
                     KSLCYQLPALLRQGAAIVVSPLIALMQDQVEALRQAGVRAAFLNSALERDAALAVEDD
                     LRN"
     gene            complement(510..1040)
                     /locus_tag="VLM17_08985"
     CDS             complement(510..1040)
                     /locus_tag="VLM17_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010364158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dps family protein"
                     /protein_id="HSR65717.1"
                     /translation="MAKHKSDKSPSAPTAPAGAPAIDIGLSDGDRRKIADGLSRFLAD
                     AYTLYLKTHNFHWNVTGPMFNTLHTMFEAQYNEQWTALDGIAERIRALGFNAPGSYAE
                     FAKLSSIAEEPLGDTGDWREMVRQLTVGNEAVCRTARKVLKGADDAGDDPTVDLLTQR
                     LQTHEKYAWMLRSLLQ"
     gene            1148..>5088
                     /gene="hrpA"
                     /locus_tag="VLM17_08990"
     CDS             1148..>5088
                     /gene="hrpA"
                     /locus_tag="VLM17_08990"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HSR65718.1"
                     /translation="MEAAAKTALTQARRALDGALSRDRGRLLGLLSRWNARPDDAKAQ
                     AAFAQALQASVAAREARAATLPQAPVAPDLPIATQAERIVELIREHQVVVIAGETGSG
                     KTTQLPKLCLAAGRGAAGMIGCTQPRRIAARAVARRVAEELQVPLGGAVGYQVRFTEH
                     VGEQTAVKFMTDGILLAEIQSDRWLSRYDTLIVDEAHERSLNIDFLLGYLRQLLQKRR
                     DLKLIVTSATIDTERFAAHFFDAPVVEVEGRGYPVEVRYRPLEGEGDAEGDRSVLEGL
                     VSACDEIVRESRLGDVLVFLPGEREIRDAHRVLEARKYRHTEVLPLYARLSARDQDRV
                     FNPGPRRRIVLATNVAETSLTVPRIHYVVDPGFARVKRYSPRQKLDRLHVEPVSQASA
                     DQRKGRCGRIAPGTCVRLYSEAEYEARARYTDPEIRRAALAGVILRMLALGLGDIEQF
                     PFLEPPDPRAVADGWQTLAELGAVDEQCKLSATGRTMARLPVDVKLARMLVAAQAHGC
                     LHEMLVIASFLGIQDPRERPADQRAAADNAHAAFADPRSEFVGILKLWDAFRAAHEDL
                     TQSQLRKWADTHFLGFLRLREWRELHRQLKLLCEELGWAAASSPHPSLPPQAGEGARP
                     AHGKGGNEPTRGSDHALPRARGRAGVGAAIDGHAHALSAGHYAALHRALIAGLPTQLG
                     NRGDRGVYDGPRGRKFQLFPGSPLAKKPPPWVLSALLLDTERVWALTNATIEPDWAIA
                     ELPHLLARRHHDPHWSRAQGRVVGSEQISLFGLVLAPRRPVHYGALYPEESRVIFARE
                     ALVPGEINARAQFLPRNLAALARAKEEEAKQRRAGLVVDEDWQAQWYLDRLPPHVHNA
                     QALDAWYAKLPNEQKAALEWSLDDLLVGEATEAVRFPPFLPLGEARLAVTYRFDPGAP
                     DDGMTVAVPLHLLNALDPARLSWLAPGFVADKAAALIKSLPKALRRNFVPAPDFARAF
                     AEAYPQPSADSIEGELARFLHRLTGVAIAATEFDPAAIEPHLRANLRLLDRDGKRVLA
                     ESRDLDALRARFGQRAADAFAARAAEGLAQQGLTTFPDAPIPESVPGAGGVPAYPALH
                     DAGDSVSLSVHADREEARRRHPDGVRRLLQLALADKLKQARKQLPVQPKPSLLYAAIE
                     SAAPRGDGPGLKDSDRLRVDLVDGAFAALTAEGLGDIRDAQAFAARRDAVGRSLFPEA
                     TARLRQAETILALVAEVRARLESKLVGWASGNLDDMRAQLAALTPPGFLRDVPAHVLG
                     EYPRYLKALSLRAERAQRDPVRDQARMLELRPFVEALAVAAAEGRDEDAAW"
BASE COUNT          748 a         1820 c         1822 g          698 t
ORIGIN      
        1 cgttgcggag gtcgtcctcg accgccagcg cggcgtcgcg ctcaagcgcc gagttgagga
       61 aggcggcgcg tacgcccgcc tggcgcaggg cctcgacctg gtcctgcatc agcgcgatca
      121 gcggcgaaac gacgatcgcc gcgccctggc gcagcagcgc gggcaactgg tagcacagcg
      181 acttgccgcc gccggtgggc atgagcacga gcgcgtcgcc gccggaggcg acgtgttcga
      241 cgatctcgcc ctgcacgccg cggaaggcgt cgtaaccgaa gacgtggcgg agcgtgtcga
      301 gggcgcggga atgcatcgcg ctagggtagc aagcgcgtca agcgcggcga tcggagaatg
      361 ccgcactccg gatcagcgca ggcaaggaaa ccgaaggccg ttcatggttc gacaggctca
      421 ccacgaacgg cgacgggctc accgcgaacg acttccggcc ccccttcgcc ctgacctgtc
      481 gaagggtgaa cggacggcca agcgccaacc tactgcagca gcgagcgcag catccaggcg
      541 tatttctcgt gggtctgcag gcgctgggtc agcaggtcga ccgtggggtc gtcgccggcg
      601 tcgtccgcgc ccttgagcac cttgcgcgcg gtgcggcaca ccgcctcgtt gccgacggtg
      661 agctggcgca ccatttcgcg ccagtcgccg gtgtcgccca gcggctcctc ggcgatcgac
      721 gacagtttcg cgaactcggc gtacgagccc ggcgcgttga agcccagcgc gcggatgcgt
      781 tcggcgatcc cgtccagcgc cgtccactgc tcgttgtact gggcctcgaa catcgtgtgc
      841 agcgtgttga acatcggacc ggtgacgttc cagtggaagt tgtgcgtctt caggtacagc
      901 gtgtaggcgt cggcgaggaa gcgcgacagg ccgtcggcga tcttgcggcg gtcgccgtcg
      961 gacaggccga tgtcgatggc gggggcgccg gccggcgcgg tcggggcgga cgggctcttg
     1021 tcggacttgt gcttggccat gtgcatgctc ctcgcggggg ttgccgccac aataggcggc
     1081 cgcggcggtc ctgggaaatg gattgtcgct agcgaaacga tcgaccgagc ctatggattc
     1141 gagcctaatg gaagccgccg ccaagaccgc gttgacgcaa gcgcggcgcg ccctcgacgg
     1201 cgcgctgtcg cgcgaccgtg ggcggctgct cggcctgctg tcgcgctgga acgcgcggcc
     1261 ggacgatgcg aaggcgcagg ccgcgttcgc gcaggccctg caggcctcgg tggcggcgcg
     1321 cgaggcgcgc gccgcgacgc tgccgcaggc cccggtcgcc cccgacctgc cgatcgccac
     1381 ccaggccgag cgcatcgtcg agctgatccg cgaacaccag gtagtcgtga tcgccggcga
     1441 gacgggctcg ggcaagacca cgcagctgcc gaaactgtgc ctcgccgcgg gtcgcggcgc
     1501 ggccggcatg atcggctgca cccagccgcg ccggatcgcg gcgcgcgcgg tggcgcgccg
     1561 cgtggcggag gaactgcagg tgccgctcgg cggcgcggtc ggctaccagg tgcgcttcac
     1621 ggagcacgtc ggcgagcaga ccgcggtcaa gttcatgacc gacggcatcc tgctggcgga
     1681 gatccagtcc gaccgctggc tgtcgcgcta cgacacgctc atcgtcgacg aggcgcacga
     1741 gcgcagcctc aacatcgatt tcctgctcgg ctacctcagg cagctgctgc agaagcggcg
     1801 cgacctgaag ctgatcgtga cctcggccac gatcgacacc gagcgctttg ccgcgcactt
     1861 cttcgatgcg ccggtcgtcg aggtcgaagg ccgcggttat ccggtcgaag tgcgctaccg
     1921 gccgctcgaa ggcgagggcg acgccgaagg cgaccgcagc gtgctcgaag gactcgtctc
     1981 ggcctgcgac gagatcgtcc gcgaatcgcg cctgggcgac gtgctggtgt tcctgccggg
     2041 cgagcgcgag atccgcgacg cgcaccgcgt gctggaagcg cgcaagtacc ggcataccga
     2101 agtgctgccg ctgtacgcgc ggctgtcggc gcgcgaccag gaccgcgtgt tcaatcccgg
     2161 cccacggcgc cgcatcgtgc tggcgaccaa cgtcgccgag acgtcgctga cggtgccgcg
     2221 catccactac gtggtcgatc ccggtttcgc ccgggtcaag cgctacagcc cgcggcagaa
     2281 gctcgaccgc ctgcacgtcg aaccggtcag ccaggccagc gccgaccagc gcaaggggcg
     2341 ctgcggccgc atcgcgccag gtacctgcgt gcgcctgtat tcggaagccg aatacgaggc
     2401 gcgtgcgcgc tacaccgatc cggaaatccg ccgcgccgcg ctcgccggcg tgatcctgcg
     2461 catgctggcg ctggggctcg gggacatcga acagttcccg ttcctggagc cgcccgatcc
     2521 gcgcgctgtg gccgacggct ggcagacgct ggccgagctc ggcgcggtcg acgaacaatg
     2581 caagctcagc gccaccggcc gcacgatggc ccgcctgccg gtcgacgtga agctcgcgcg
     2641 catgctggtc gccgcgcagg cgcacggctg cctgcacgag atgctggtga tcgccagctt
     2701 cctcggcatc caggacccgc gcgagagacc ggccgaccag cgcgccgccg ccgacaacgc
     2761 gcacgcggcg ttcgccgatc cgcgttccga attcgtcggc atcctcaagc tgtgggacgc
     2821 gttccgcgcc gcgcacgagg acctcaccca atcgcagctg cgcaagtggg ccgacaccca
     2881 tttcctcggc ttcctgcggc tgcgcgaatg gcgcgagctg caccggcagc tgaagctgtt
     2941 gtgcgaggaa ctggggtggg ccgcggcgtc atccccccat cccagccttc ccccgcaagc
     3001 gggggaagga gccaggccgg cgcatgggaa gggtggcaat gaacccacgc gcggatcgga
     3061 ccacgccctc ccccgcgcgc gggggagggc cggggtgggg gcagccatcg acggacatgc
     3121 ccatgcgctg tcggcaggcc actacgccgc cctgcatcgc gcgttgatcg cagggcttcc
     3181 gacgcaactg ggcaaccgcg gcgaccgcgg cgtctacgac ggcccgcgcg gccgcaagtt
     3241 ccagctcttt cccggttcgc cgctggcgaa aaaaccgcca ccgtgggtgc tgtccgcgct
     3301 gctgctcgac accgagcgcg tgtgggcgct gacgaatgcg acgatcgagc ccgactgggc
     3361 gatcgccgaa ctcccgcacc tgctcgcgcg ccgccaccac gacccgcact ggtcgagggc
     3421 acagggccgc gtcgtcggca gcgagcagat ctcgctgttc ggcctcgtgc tcgcgcccag
     3481 gcgcccggtg cattacggcg cgctgtaccc ggaagagagc cgcgtgatct tcgcgcgcga
     3541 ggcgctggtg cccggcgaga tcaacgcgcg cgcgcagttc ctgccgcgca acctcgccgc
     3601 gctggcaagg gcgaaggaag aggaagccaa gcaacgccgc gcgggcctcg tcgtcgacga
     3661 agactggcag gcgcagtggt acctcgaccg gctgccgccg cacgtgcaca acgcgcaggc
     3721 gctggacgcg tggtacgcga agctgccgaa cgagcagaag gccgcgctcg aatggtcgct
     3781 cgacgacctg ctggtcggcg aggcgaccga agccgttcgc ttccccccgt tcctgccgct
     3841 gggcgaggcg cgccttgccg tcacctaccg cttcgacccc ggcgcgcccg acgacggcat
     3901 gacggtggcg gtgccgttgc acctgctcaa tgcgctcgat cccgcgcggc tgtcgtggct
     3961 cgcgccgggc ttcgtcgccg acaaggcggc cgcgctgatc aagtcgctgc cgaaggccct
     4021 gcggcgcaat ttcgtgccgg cgccggattt cgcgcgcgcg ttcgcggagg cgtacccgca
     4081 gcccagcgcg gattcgatcg aaggcgagct cgcccgcttc ctgcaccggc tcaccggcgt
     4141 ggcgattgcg gcgacggaat tcgatccggc ggcgatcgaa ccgcacctgc gcgccaacct
     4201 gcgcctgctg gaccgtgacg gcaagcgcgt gctggcggaa tcgcgcgacc tcgacgcact
     4261 gcgcgcgcga ttcggccagc gtgccgccga cgcgttcgcg gcgcgcgccg cggaagggct
     4321 cgcgcaacag gggctcacca cgtttcccga cgcaccgatc cccgaatccg tgcccggcgc
     4381 cggcggggtg cccgcctatc ccgcgctgca cgacgcgggc gacagcgtgt ccctctcggt
     4441 gcacgcggac cgggaggaag cgcgccgacg tcatccggac ggcgtccggc ggctgctgca
     4501 gctcgcgcta gccgacaagc tcaagcaggc ccgcaagcag ttgccggtgc agcccaagcc
     4561 gtcgctgctg tacgcggcga tcgagtcggc cgcgccccgc ggcgacgggc ctgggctcaa
     4621 ggacagcgac cgcctgcgcg tcgacctcgt cgacggcgcg ttcgccgcgc tcaccgcgga
     4681 aggcctgggc gacatccgcg atgcgcaggc gttcgccgcg cgccgcgacg cggtcggcag
     4741 gtcgctgttc cccgaggcga ccgcgcgcct gcgccaggcc gaaaccatcc tcgcgctggt
     4801 ggcggaggtc cgcgccaggc tcgaatcgaa gctggtcggc tgggcgagcg gcaacctcga
     4861 cgacatgcgc gcgcagctcg ccgcgctcac cccgccgggc ttcctgcgcg acgtgccggc
     4921 ccacgtgctg ggcgagtatc cgcgttacct caaggcactg tcgttgcgcg ccgaacgtgc
     4981 gcagcgcgat ccggtgcgcg accaggcgcg catgctcgag ctgcggccgt tcgtcgaggc
     5041 gctcgcggtg gcggccgcgg aagggcgcga cgaggacgcg gcctggca
//
LOCUS       DATIQC010000418         4661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_380382, whole genome shotgun sequence.
ACCESSION   DATIQC010000418 DATIQC010000000
VERSION     DATIQC010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380382"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..914)
                     /gene="rffA"
                     /locus_tag="VLM17_08995"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(<1..914)
                     /gene="rffA"
                     /locus_tag="VLM17_08995"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019180 -
                     dTDP-4-amino-4,6-dideoxygalactose transaminase activity
                     [Evidence IEA];
                     GO_process: GO:0009246 - enterobacterial common antigen
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HSR65719.1"
                     /translation="MIPFNKPYMTGAELGYIAQAHANGHLSGDGDFTRRCNAWLESHT
                     GAAKALLTHSCTAALEMAAMLLDLAPGDEVIMPSFTFVSTANAFVLRGAVPVFVDVRE
                     DTLNLDERLVEAAITPRTRAICVVHYAGVACDMDAILAIAARHGLKVVEDAAQAIFSR
                     YKGRPLGSLGELGCISFHETKNIISGEGGALLVRDAGMAERAEILREKGTNRSRFFRG
                     QVDKYTWVDVGSSYLPGEIIAAFLAAQMEAGEAINQRRLALWERYHAWAAPHEAAGRV
                     RRPVIPGDCTHNAHMYYLLLPTLEARTA"
     gene            complement(911..1804)
                     /locus_tag="VLM17_09000"
     CDS             complement(911..1804)
                     /locus_tag="VLM17_09000"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR65720.1"
                     /translation="MTGRGDAGPFNRCVSCGAATSTRTCTACGHAPAPIDGFDCYAPA
                     LAHGGAGYDASHYTALARLEAANFWFRARNQIIIDALRRHRPGFGSLLEIGCGTGFVL
                     SGIRAAFPGAELTGTEVFAEGLAHAAKRLPGVRLAQMDARDIPATGSFDAIGAFDVIE
                     HIEDDRKVLAEIHRALAPGGAVVLTVPQHAWLWSVQDDLARHVRRYSRSELVEKVRAA
                     GFDVAQVSSFVTALLPLMMLSRLRKAGPDASTDPYRELRITPWMNRLLFLAMQLDRAA
                     LRLRLSLPLGGSLLLVALKPR"
     gene            complement(1801..2421)
                     /locus_tag="VLM17_09005"
     CDS             complement(1801..2421)
                     /locus_tag="VLM17_09005"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010480654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR65721.1"
                     /translation="MAQITSGLRRVLSVPVVYNLWQNLVGAKRSRSLVCSDHFRVAPG
                     QRVVDVGCGTGEILDYLPEGIAYYGFDLDPGYIRTAQARYEGRGHFTCADITSLPADA
                     IPPCDLAIAFGLLHHLDDDGARALLAHLFQRLAPGGRLVTIDGVWVEGQSALARALIA
                     RDRGQNVRDTAGYLALVPAEFSSRTLVVRHDLLRIPSSLAIMECTK"
     gene            complement(2442..2807)
                     /locus_tag="VLM17_09010"
     CDS             complement(2442..2807)
                     /locus_tag="VLM17_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010480655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSR65722.1"
                     /translation="MGYVYIALMLALTLYGQLVLKWQVGRIGVLPRDLPALVHYLAQL
                     LLSPWVISGLAAAFLASICWMLALTRLELSRAYPFTALGLVLVFAASAAVFGEALNPG
                     KLLGGGLIVAGICVVALYG"
     gene            complement(2813..3955)
                     /locus_tag="VLM17_09015"
     CDS             complement(2813..3955)
                     /locus_tag="VLM17_09015"
                     /inference="COORDINATES: protein motif:HMM:NF024844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GNAT family
                     N-acetyltransferase/hotdog fold thioesterase"
                     /protein_id="HSR65723.1"
                     /translation="MSAPLPVSLLPSPLDSARFGLRVFRGNGTALREREFFDALVADQ
                     VDVAIVRTPAGTGGWQRLARYGLQPIHADTLVYYEIDLGAHDPRPPRNADLVFAEALP
                     SDREALAALVATTFAGYVSHYHANPLFAPAGILAGYMEWATGFIAADVPGRTTWVARR
                     DGAIVAFACCSHDEASSQCEGVLYGVHPDHAGGGLYGDLIRYTQAAFRERGFRRMAVS
                     TQVWNYAVQKVWAREGFALARAYDTWHVNAMLSGGAPMVDRTLCFDAAQLARFAEATG
                     DANPVHFDDEAARAAGFPRRISHGMLVGGELSRIFGMETPGPGTLFLRANLVFLKPLF
                     AGQPYRLHVRNAAGGEAVGYVPAVATVSDADGALCVLCYSDLLKRS"
     gene            complement(3960..>4661)
                     /locus_tag="VLM17_09020"
     CDS             complement(3960..>4661)
                     /locus_tag="VLM17_09020"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HSR65724.1"
                     /translation="AAGLAHARGRQVVVMDCDLQDVPEEIPRLLEAATQERDIVLAQR
                     ADRQDPLGKRIGSYLFHRLLSWLTGVEQDHSVANFGVYSRRVVDTINAMPEVERFFPL
                     MVRWTGLPAEHVPVRHAERTSGRSSYNLGKLARLALHIVLSYSDKPLRLVVKLGLLFS
                     LASVAIVALSLWRYFIGDVQVAGFTSIIASIWLLGSVMILCTGLVGLYVGRLFNESKR
                     RPSYIVRDATNPTPE"
BASE COUNT          763 a         1551 c         1694 g          653 t
ORIGIN      
        1 aaggcggtgc gcgcctccag cgtgggcagc agcaggtagt acatgtgcgc gttgtgcgtg
       61 cagtcgcccg gaatgacggg gcggcgcacg cggccggcgg cttcatgcgg cgcggcccac
      121 gcgtggtagc gctcccacag cgcgagcctg cgctggttga tggcttcgcc cgcctccatc
      181 tgcgccgcga ggaacgcggc gatgatttcg cccggcaggt acgacgaacc gacgtcgacc
      241 caggtgtact tgtcgacctg gccgcggaag aagcgcgagc ggttggtgcc cttttcgcgc
      301 aggatttccg cgcgctcggc cattccggcg tcgcgcacca gcagtgcgcc gccttcgccg
      361 gaaatgatgt tcttggtttc gtggaagcta atgcacccca gttcgccgag gctgcccagc
      421 ggccggccct tgtagcgcga gaagatcgcc tgcgccgcgt cctccacgac cttgagcccg
      481 tgccgtgccg cgatggcgag gatcgcgtcc atgtcgcagg cgacgccggc gtagtggacg
      541 acgcagatgg ccctggtgcg tggcgtgatg gccgcctcga cgagccgctc gtcgaggttg
      601 agggtgtcct cgcggacgtc gacgaagacc ggcacggccc cgcgcagcac gaaggcattc
      661 gcggtggaca cgaacgtgaa ggacggcatg atcacttcgt cgcccggcgc caggtcgagc
      721 agcatcgccg ccatctccag ggcggcggtg cacgagtggg tgagcagcgc cttcgccgcg
      781 ccggtgtgcg actccagcca tgcattgcag cgcctggtga aatccccgtc gccggaaaga
      841 tggccgttgg catgcgcctg ggcgatgtag cccagctcgg cgccggtcat gtacggcttg
      901 ttgaacggga tcatcgcggc ttgagggcga ccagcagcag gctcccgccc agcgggaggg
      961 acaggcgcag gcgcagcgcg gcccggtcga gctgcatcgc cagaaacaag agtcgattca
     1021 tccacggcgt gatcctcagt tcccggtagg ggtccgtcga tgcgtccggc ccggccttgc
     1081 gcaggcggga cagcatcatc aacggcagca aggcggtgac gaacgatgac acctgcgcga
     1141 cgtcgaagcc agcggcgcgg accttttcca cgagttcgga gcgggaatac cggcggacgt
     1201 ggcgggccag gtcgtcctgc acgctccaca gccatgcgtg ctgggggacc gtcaggacca
     1261 cggcgccgcc cggggcgagc gcgcggtgga tttcggcgag caccttgcga tcgtcctcga
     1321 tgtgttcgat cacgtcgaac gcgccgatgg catcgaagct gcccgtcgcc gggatgtcgc
     1381 gcgcgtccat ctgggccagg cgcacgccgg gcaggcgctt ggcggcgtgc gcgagtccct
     1441 cggcgaacac ctcggtgccg gtcagctccg cgccggggaa cgcggcgcgg attcccgaca
     1501 gcacgaagcc cgtgccgcat ccgatctcga gcagggaccc gaagccggga cgatgccggc
     1561 gcagcgcatc gatgatgatc tggttgcgcg cgcggaacca gaaattggct gcctcgaggc
     1621 gggccagcgc cgtgtagtgg gacgcgtcgt atccggcgcc gccgtgggcg agcgccggcg
     1681 cgtagcagtc gaacccgtcg atcggcgccg gcgcatggcc gcaggcggtg caggtgcgcg
     1741 tcgaggtcgc ggcgccgcag gagacgcaac gattgaacgg accggcatcg ccccgtccgg
     1801 tcatttggtg cattccatga tggccagcga ggaggggatg cgcagcaggt cgtggcgcac
     1861 caccagcgtg cgcgatgaga actccgccgg caccagcgcg aggtatccgg ccgtgtcgcg
     1921 gacgttctgg ccgcggtcgc gcgcgatcag cgcgcgggcg agcgccgact gtccttccac
     1981 ccagacgcca tcgatggtca cgaggcggcc gccgggcgcg aggcgctgga acaggtgcgc
     2041 gagcagcgcg cgggctccgt cgtcgtcgag gtggtgcagc aaaccgaagg cgatcgccag
     2101 gtcgcagggc ggaatggcgt cggcgggcag gctggtgatg tcggcgcagg tgaagtggcc
     2161 gcgaccttcg tacctggcct gcgcggtccg gatgtagccc gggtcgaggt cgaagccgta
     2221 gtacgcgatg ccttcgggca ggtaatccag gatctccccg gtaccgcatc cgacgtcgac
     2281 gacgcgctgg cccggcgcga cgcggaagtg gtcgctgcag acgaggctgc gcgaacgttt
     2341 tgcacccacc aggttctgcc acaggttgta caccaccggg accgacaaca cccgccggag
     2401 gccgctcgtg atctgcgcca tatgaaggag atttcctcgt cttaaccgta gagcgcgacg
     2461 acgcagatgc cggcgacgat gaggcccccg ccgagcagct tgcccgggtt cagggcttcc
     2521 ccgaagaccg cggcgcttgc cgcgaatacg agcaccaggc ccagggcggt gaacggatag
     2581 gcccggctca gctcgagccg ggtcaacgcg agcatccagc agatcgacgc aaggaaggct
     2641 gcggccaggc cggagatcac ccagggagac agcaacagct gcgcgaggta atgcaccagc
     2701 gccggcaggt ccctcggcaa cacgccgatg cgacccacct gccacttcag caccagttgc
     2761 ccgtacagcg tcagcgccag catcagtgcg atgtagacgt agcccatcgg tctcaactcc
     2821 gcttgagcag gtcgctgtag cacagcacgc acagggcgcc gtcggcgtcg ctgaccgtgg
     2881 ccaccgccgg gacgtaaccg accgcctcgc cgcccgcggc gttccggacg tgcaggcggt
     2941 agggctggcc ggcgaacagc ggcttcagga acacgaggtt cgccctcagg aacaacgtgc
     3001 cgggccccgg ggtttccatg ccgaaaatgc gcgagagttc cccgcccacg agcatgccgt
     3061 gcgaaatccg gcgcgggaag ccggcggcgc gtgcggcctc gtcgtcgaaa tgcacgggat
     3121 tcgcgtcgcc cgtggcctcg gcgaagcggg ccagctgcgc ggcgtcgaag cacagcgtgc
     3181 ggtcgaccat gggagcgccg ccgctcagca tcgcgttgac gtgccacgtg tcgtaggcac
     3241 gggccagcgc gaacccttcg cgcgcccaga ccttctgcac ggcgtagttc cagacctggg
     3301 tcgagaccgc catgcgccgg aagccgcgct cgcggaaagc cgcctgcgtg taccggatca
     3361 ggtcgccgta gaggccgccg ccggcatggt cgggatgcac gccgtacagg acgccctcgc
     3421 attgcgacga cgcttcgtca tggctgcagc aggcgaacgc cacgatggcg ccatcgcgac
     3481 gcgcgaccca cgtggtgcga ccgggcacgt cggcggcgat gaagccggtg gcccattcca
     3541 tgtagccggc gaggatgccg gcgggcgcga acagcgggtt ggcgtggtag tggctgacgt
     3601 agccggcgaa ggtcgtggcg accagcgccg ccagtgcttc gcggtccgaa ggcagtgctt
     3661 cggcgaacac gaggtccgcg ttgcggggcg gccggggatc gtgcgcgccg aggtcgatct
     3721 cgtagtacac cagggtgtcg gcgtggatcg gctgcaggcc gtagcgggcc aggcgctgcc
     3781 agcctccggt gccggccggc gtgcgcacga tcgccacgtc gacctggtcg gccaccagcg
     3841 cgtcgaagaa ctcccgctcc cggagcgcgg tgccgttgcc gcggaacacc cgcagcccga
     3901 agcgggcgga gtccaggggc gacggcagca gggagaccgg gagaggcgcg gacatggcat
     3961 cactccggcg tcgggttggt ggcatcgcgg acgatgtagg agggacggcg cttggattcg
     4021 ttgaacaggc ggccgacgta gagcccgacg aggcccgtgc agaggatcat cacgctgccc
     4081 agcagccaga tcgaggcgat gatgctggtg aagccggcga cctgcacgtc gccgatgaag
     4141 tagcgccaca ggctgagcgc cacgatggcg acggaagcga gcgaaaacag cagccccagc
     4201 ttgaccacca ggcgcagggg cttgtcggaa tacgacagca cgatgtgcag cgcgagccgg
     4261 gccagcttgc cgaggttgta gctgctccgg ccggacgtgc gctcggcatg ccgcaccggc
     4321 acgtgttccg ccggcaggcc cgtccatcgc accatcagcg ggaagaagcg ctccacttcc
     4381 ggcatcgcgt tgatggtgtc cacgaccctg cgcgaataca cgccgaagtt cgccacgctg
     4441 tggtcctgct ccacgccggt gagccaggag agcaggcggt ggaacaggta ggagccgatg
     4501 cgcttgccca gcgggtcctg ccggtccgcg cgctgggcca ggacgatgtc gcgctcctgc
     4561 gtggcggcct ccagcaggcg cgggatctcc tcgggcacgt cctggaggtc gcagtccatc
     4621 accaccacct gccgcccgcg cgcgtgcgca agccctgcgg c
//
LOCUS       DATIQC010000419         5562 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_310278, whole genome shotgun sequence.
ACCESSION   DATIQC010000419 DATIQC010000000
VERSION     DATIQC010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5562
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310278"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VLM17_09025"
     CDS             <1..402
                     /locus_tag="VLM17_09025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65725.1"
                     /translation="LLPVAGTQRTAVLGLDPSAPEKRTYLVLRQLHAWAQPEVVYEVY
                     LTGRDGRPDRDDLAGAIHFFDAEFHDHGGGAMADVLGENLFSFDVTRLLRRHARSGDT
                     SARDSLLVTLVPAGTPTGGQPMVGVIELLRQ"
     gene            712..2199
                     /locus_tag="VLM17_09030"
     CDS             712..2199
                     /locus_tag="VLM17_09030"
                     /inference="COORDINATES: protein motif:HMM:NF012486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosinase family protein"
                     /protein_id="HSR65726.1"
                     /translation="MTSLSRRSFVKGIAAMPLVMGVTPLARASSGYVRYDCTSAEGID
                     MLATYASAVTQMRALGADDPMSWMWQWYAHFVNGATTKAAELDRVFGTATSPMRTLAE
                     ETWDMCQPHGGQNANFFLPWHRMFVYYFERVVRYVSGRSDFTLPYWDYTSDDLAKRGI
                     LPPHFRMPDDPVFGSLYIKNRKAAANAGQPIQQNQPTDVMDISDTMAKANYMTSGGVT
                     GFCRSVDSGIHSRIHVLVGTSTDMGKIPYAGNDPLFWVHHSNIDRIWASWTHNGGVNP
                     VTATWAKKQFVMVDAGGVRVQAPLNQYMDEAALGYGYECLIPPPVAASATLAMAAPRT
                     TAPTGTVAERVASARAAAMLGDKPTRVMLEPLAGARRSEVLGLDGTGKRAYLLLKDLH
                     TWEQPGVLFHVYVGPGKGPARLDAAHHAGVINFFDAEFHNFGDPKMDMALGENLYSFD
                     VTAILESLRRNAGGNARAALLVSIVPAGRPAGGSPMVGTIELVRQ"
     gene            complement(2203..3327)
                     /gene="dnaJ"
                     /locus_tag="VLM17_09035"
     CDS             complement(2203..3327)
                     /gene="dnaJ"
                     /locus_tag="VLM17_09035"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012438731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HSR65727.1"
                     /translation="MSKRDYYEVLGVARNASDEELKKAYRRCAMKYHPDRNPDAAAVE
                     SFKEAKEAYEVLSDAGKRRLYDAHGHAAFEHGMGGAGGGAGFGDMGDIFGDIFGNIFG
                     GGGAGARPRRGADIGYVMELDLEEAVAGIEKQIEIPTLAACGACAATGSEDGRLDTCA
                     TCHGRGQVRMQRGIFTMQQVCPHCGGRGQTIANPCKSCHGAGRIEHEKALAVKIPAGV
                     DNGDRIRLAGEGEAGPAGTPPGDLYVEVRVRPHPIFERDGDDLHCEVPIRISQAALGD
                     TIRVPTLEGEVELRIPAETQTGKMFRLRDRGVRSVRSRAVGDLYCKAVVETPVNLTAE
                     QRTLLEQFEATFVGEGARRHSPKASTFLDGVKGFWDRMVS"
     gene            complement(3324..3905)
                     /locus_tag="VLM17_09040"
     CDS             complement(3324..3905)
                     /locus_tag="VLM17_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007080727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HSR65728.1"
                     /translation="MGKARLEAFSDGVIAIIITIMVLELRAPPGTGLAALRPLLPVFL
                     SYVLSFAYVGIYWVNHHHFLHAAQHVSGKVLWANLFLLFWLSLFPFATAWMGENHFAA
                     VPVALYGVVLLMAALAWRPFQASLIAANGGRDSLLARATAHDWKGLASPVFYAAAIAL
                     AFVHPALSGLLYVAVAVMWLVPDRRIESRLTRA"
     gene            complement(3984..>5562)
                     /gene="dnaK"
                     /locus_tag="VLM17_09045"
     CDS             complement(3984..>5562)
                     /gene="dnaK"
                     /locus_tag="VLM17_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020851274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HSR65729.1"
                     /translation="AEVLAKMKKTAEAYLGETVTEAVITVPAYFNDSQRQATKDAGQI
                     AGLTVKRIINEPTAAALAYGLDKSGGDRKVAVYDLGGGTFDISIIEIASVDGEMQVEV
                     LSTNGDTFLGGEDFDKRVIDYLVDEFLKDQGIDLRKDPLALQRLKDAAERAKIELSSS
                     QQTEVNLPYVTADASGPKHLNIKLTRAKLESLVEDLIRKTIEPCRIALNDADMRASDI
                     NEVILVGGQTRMPKVQQAVGEFFGKEPRKDVNPDEAVAVGAAIQGGVLQGDVKDVLLL
                     DVTPLSLGIETLGGVMTKIIEKNTTIPTKAAQTFSTAEDNQTAVTVHVLQGEREQARY
                     NKSLAKFDLTGIDSAPRGMPQVEVSFDIDANGILHVSAKDKKTGKEQKVEIKAGSGLS
                     DEEIQRMVQDAESHREEDRKFHELVQARNHADALIHATRNAIKENGDKIPGDAIGRAE
                     GAIAELETAMKGDDKGQIEAKSRALEEASQSLFAAAQAGQGGGEQGGAGAPGGAPRSE
                     DVVDAEFTEVKDNDKRS"
BASE COUNT          795 a         2000 c         1857 g          910 t
ORIGIN      
        1 ttgctgccgg ttgcgggcac gcaacgtacc gccgtcctcg gcctggatcc ttccgcaccc
       61 gaaaagcgca cctaccttgt gctgcggcaa ctgcacgcct gggcgcagcc cgaagtggtg
      121 tacgaggtgt acctgaccgg ccgcgacggc cgtccggacc gcgacgacct cgccggcgcc
      181 atccacttct tcgacgccga gttccacgac cacggcggcg gcgcgatggc cgacgtgctc
      241 ggcgagaacc tgttcagctt cgacgtcacc cggctgctgc gccgccatgc gcgcagtggc
      301 gacaccagcg cgcgggactc actgctcgtc accctcgtgc cggccggcac gccgaccggc
      361 ggccaaccga tggtgggcgt catcgaactg ctgcggcagt aggcaggcca tcgcgacggc
      421 cgataggcca cgcccgaggc gatcccccgg gcgcggagtc gcccgcccgc gcggcaagcc
      481 gcccggcggc gccatcgaaa cgctgcatga acaggacgcc tcggcgcgtg cgatcccgcc
      541 gcggatctgc ctggatccaa cgccctgttc ctgctgccct tgacccccgc atcacccgct
      601 ctccggtcat ctgtgcccgg gaacggccgc ttcggggatc gcacgccggc gattcgccgg
      661 cgcacgccgc cattccccgt gacccgcaga acccgctcaa ggagggatgt cgtgacttcg
      721 ctcagccgtc gcagtttcgt gaaaggtatc gccgccatgc cgctggtgat gggagtgacc
      781 cccctcgccc gcgcctcctc cggctacgtc cgctacgact gcacgagcgc cgaaggcatc
      841 gacatgctgg ccacctatgc cagcgcggtc acccagatgc gcgcgctcgg ggccgacgac
      901 ccgatgagct ggatgtggca gtggtacgcg cacttcgtca acggcgcgac caccaaggcc
      961 gccgagctgg accgggtgtt cggcacggcc acgtcgccga tgcgcaccct ggcggaggaa
     1021 acctgggaca tgtgccagcc gcacggcggg cagaacgcca acttcttcct gccctggcac
     1081 cggatgttcg tctactactt cgagcgcgtc gtgcgctacg tcagcggacg ctcggacttc
     1141 acgctgccgt actgggacta cacctcggac gacctggcca agcgcggcat cctcccgccc
     1201 catttccgca tgccggacga cccggtcttc ggcagcctct acatcaagaa ccggaaggcc
     1261 gccgccaacg cgggccagcc gatccagcag aaccagccga ccgacgtcat ggacatcagc
     1321 gacaccatgg cgaaggcgaa ctacatgacc tcgggcgggg tgacgggctt ctgccgttcg
     1381 gtggactccg gcatccacag ccggatccac gtcctggtcg gcacctcgac cgacatgggc
     1441 aagatcccct atgccggcaa cgacccgctg ttctgggtgc accactccaa catcgaccgc
     1501 atctgggcga gctggaccca caacggcggg gtgaacccgg taacggcgac ctgggcgaag
     1561 aagcagttcg tgatggtgga cgccggcggc gtgcgcgtgc aggcgccgct caaccagtac
     1621 atggacgagg ccgcgctcgg ctacggctac gaatgcctga tcccgccgcc cgtggcggcc
     1681 tccgcgacgc tggcgatggc ggcgccccgg acgaccgcgc ccacgggcac ggtcgccgag
     1741 cgggtggcca gtgcgcgcgc cgcggcgatg ctgggcgaca agccgacgcg ggtcatgctc
     1801 gagccgctcg cgggcgcccg ccgctccgag gtgctgggcc tggacggcac cggcaagcgg
     1861 gcctacctgc tgctcaagga cctgcacacc tgggagcagc cgggcgtgct gttccatgtc
     1921 tacgtgggcc ccggcaaggg acccgcccgg ctcgacgccg cgcaccacgc cggcgtgatc
     1981 aacttcttcg acgccgaatt ccacaacttc ggcgatccga agatggacat ggcgctgggc
     2041 gagaacctct acagcttcga cgtcaccgcg atcctggaat cgctccgccg caacgccggc
     2101 ggcaacgcgc gcgccgcgct gctggtgtcg atcgtgccgg ccggccggcc ggccggcggc
     2161 agcccgatgg tcggcacgat cgaactggtc cgccagtaac ggtcaggaca ccatgcggtc
     2221 ccagaacccc ttgaccccgt cgaggaaggt gctggccttg ggcgagtggc ggcgcgcgcc
     2281 ctcgccgacg aaggtggcct cgaactgttc cagcagcgtg cgctgctcgg cggtgaggtt
     2341 gaccggcgtc tccaccaccg ccttgcagta gaggtcgccg accgcgcggc tgcgcaccga
     2401 gcgcacgccg cggtcgcgca gccggaacat cttgccggtc tgcgtttcgg ccgggatccg
     2461 cagctccacc tcgccctcga gcgtcggcac gcggatggtg tcgccgagcg cggcctgcga
     2521 gatgcggatc ggcacctcgc aatgcaggtc gtcgccgtcg cgctcgaaga tcggatgcgg
     2581 gcgcacccgc acttcgacgt agaggtcgcc gggcggcgtg cccgccggcc cggcctcgcc
     2641 ttcgccggcc aggcggatgc ggtcgccgtt gtccacgccc gcgggaatct tcaccgccag
     2701 cgccttctcg tgctcgatgc ggcccgcgcc atggcagctc ttgcaggggt tggcgatcgt
     2761 ctgcccgcgc ccgccgcagt gcgggcacac ctgctgcatg gtgaagatgc cgcgctgcat
     2821 gcgcacctgg ccgcggccgt ggcaggtcgc gcaggtatcc aggcggccat cctccgagcc
     2881 ggtggcggcg caggcgccgc aggccgcgag cgtcgggatc tcgatctgct tctcgatgcc
     2941 ggcgacggct tcctcgaggt cgagttccat cacgtagccg atgtccgcgc cgcggcgcgg
     3001 gcgcgcgccc gcgccgccgc ccccgaagat gttgccgaag atgtcgccga agatgtcccc
     3061 catgtcgccg aagcccgcgc caccgccggc accgcccatg ccgtgctcga aagcggcgtg
     3121 gccgtgcgcg tcgtacagcc ggcgcttgcc ggcgtcggac agcacctcgt aggcctcctt
     3181 ggcttccttg aaggattcca ccgccgccgc gtcagggttg cggtcggggt ggtacttcat
     3241 cgcacagcgg cgataggcct tcttcagctc ctcgtcggaa gcgttgcggg ccacgcccag
     3301 gacttcgtag tagtcgcgct tgctcatgct cgggtcagtc gggattcgat gcggcggtcg
     3361 ggcaccagcc acatcaccgc gacggcgacg tacagcaggc ccgacagcgc gggatggacg
     3421 aacgccagcg cgatcgcggc ggcgtagaac acgggtgaag ccaggccttt ccagtcatgc
     3481 gccgtcgccc gcgccagcag cgagtcgcgc ccgccgttgg cggcgatcag cgacgcctgg
     3541 aacggccgcc aggcgagcgc cgccatcagc agcaccacgc cgtagagggc caccggcacg
     3601 gcggcgaagt ggttctcgcc catccacgcg gtggcgaacg ggaacagcga gagccagaac
     3661 agcaggaaca ggttggccca cagcaccttg ccgctgacgt gctgcgcggc gtgcaggaaa
     3721 tgatggtggt tgacccagta gatgccgacg taggcgaaac tcagcacgta gctgaggaac
     3781 accggcagca acgggcgcag cgcggcgagg ccggtgcccg gcggcgcgcg cagctccagc
     3841 accatgatcg tgatgatgat ggcgatgacg ccgtcgctga acgcctcgag ccgcgccttg
     3901 cccattgccc tgcctcgcct gccccttcat ggcgacgggc gcccgttgcc ggacgcccgc
     3961 cgctggcctt catgctcgca tgatcaggaa cgcttgtcgt tgtccttgac ctcggtgaac
     4021 tccgcgtcga ccacgtcctc gctgcgcggc gcgccgcccg gcgcgccggc gccgccctgc
     4081 tcgccgccgc cctggccggc ctgcgccgcc gcgaacagcg actggctggc ttcctccagc
     4141 gcgcgcgact tggcctcgat ctggcccttg tcgtcgccct tcatcgcggt ctcgagctcg
     4201 gcgatggcgc cttccgcgcg accgatcgcg tcgcccggga tcttgtcgcc gttctccttg
     4261 atcgcgttgc gggtggcgtg gatcagcgcg tcggcgtggt tgcgcgcctg cacgagctcg
     4321 tggaacttcc tgtcttcctc ccgatgcgat tccgcgtcct gcaccatccg ctggatctct
     4381 tcgtccgaca ggccggaacc cgccttgatc tcgaccttct gctccttgcc ggtcttcttg
     4441 tccttggcgc tgacgtgcag gatgccgttg gcgtcgatgt cgaaggacac ctcgacctgc
     4501 ggcatgccgc gcggcgcgga gtcgatgccg gtgaggtcga acttggccag cgacttgttg
     4561 tagcgggcct gctcgcgctc gccctgcagc acgtgcacgg tgaccgcggt ctggttgtcc
     4621 tcggcggtcg agaaggtctg cgcggccttg gtcgggatcg tggtgttctt ctcgatgatc
     4681 ttggtcatca ccccgcccag ggtctcgatg cccaggctca gcggggtcac gtcgagcagc
     4741 agcacgtcct tgacgtcgcc ctgcagcacg ccgccctgga tcgcggcgcc gacggcgacg
     4801 gcctcgtcgg ggttgacgtc cttgcgcggc tccttgccga agaactcgcc caccgcctgc
     4861 tgcaccttcg gcatgcgggt ctggccaccg accaggatca cctcgttgat gtcgctggcg
     4921 cgcatgtcgg cgtcgttcag cgcgatgcgg cacggctcga tcgtcttcct gatcaggtcc
     4981 tcgaccagcg actcgagctt ggcccgggtc agcttgatgt tgaggtgctt cggtccggaa
     5041 gcgtcggccg tcacgtacgg caggttcact tcggtctgct gcgagctcga cagctcgatc
     5101 ttggcgcgct cggccgcgtc cttcaggcgc tggagggcca gcggatcctt gcgcaggtcg
     5161 atgccctggt ccttcaggaa ttcgtcgacg aggtagtcga tgacgcgctt gtcgaagtct
     5221 tcgccgccca ggaacgtgtc gccgttggtg gacagcactt cgacctgcat ttcgccgtcg
     5281 accgacgcga tctcgatgat cgagatgtcg aaggtgccgc cgcccaggtc gtacacggcc
     5341 accttgcggt caccgccgga cttgtcgaga ccgtaggcca gcgcggccgc ggtcggctcg
     5401 ttgatgatgc gcttgacggt cagaccagcg atctggcccg cgtccttggt cgcctggcgc
     5461 tggctgtcgt tgaagtacgc cggcacggtg atgacggctt cggtgacggt ttcaccgaga
     5521 tacgcttccg cggttttctt catcttggcc agcacttcgg cc
//
LOCUS       DATIQC010000420         1504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_345186, whole genome shotgun sequence.
ACCESSION   DATIQC010000420 DATIQC010000000
VERSION     DATIQC010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345186"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VLM17_09050"
     CDS             <1..406
                     /locus_tag="VLM17_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016944655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65730.1"
                     /translation="QQGPQSQRQPASQPSPPGASGRQDAQQREAQHGQQRGQAQSTPQ
                     PGQQPPPQQPADAGAQRRADAAQRARMQAALRRAPGAARGTPTRRAETPAEREQRLAD
                     EAWLRRIPDDPGGLLRARFRIEYERRQLGGTR"
     gene            403..>1504
                     /locus_tag="VLM17_09055"
     CDS             403..>1504
                     /locus_tag="VLM17_09055"
                     /inference="COORDINATES: protein motif:HMM:NF024973.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatD family protein"
                     /protein_id="HSR65731.1"
                     /translation="MSRGLRGVAGVLLVLVATPAFGQARAWLERDRIGIDETVALNIE
                     AEQAGAPAPDYSPLQRDFVVSGNTSSRQFELVNGVARSRVLYSVALQPRRQGLLEVPA
                     LAVGNARTSPLTLAVTAPQSAPARAGDVVFIEAEADAQSPYVQQAVGYTVRLYYATQL
                     VSGELDQDPPDGATLQRVGDDVQYERDVGGRHYHVVERHYLLIPEHSGTLAIPGARFG
                     GRGVGGLFDDMFGNGDADLRAASPPRFLSVRPIPANAPQPWLPLRALALRYASAPRGA
                     RVGEASTVTVEADADGATAAQLPELQLQADGAQVFADPPQADERIVDGRPRVHLSRRF
                     SIVPARAGAMRIAGPSLAWWDVRAGVARTASLP"
BASE COUNT          198 a          576 c          561 g          169 t
ORIGIN      
        1 gcaacagggg ccgcagtcgc aacggcagcc cgcgtcgcaa ccctcgccac ccggggcgtc
       61 gggccggcag gatgcgcagc agcgtgaagc gcaacacggg caacagcgtg ggcaggcgca
      121 gtccacgccg caacccggac aacaaccccc gccgcaacaa cctgccgatg caggggcgca
      181 gcgccgcgcc gacgccgcgc agcgcgcgcg catgcaggcc gcgctgcggc gcgcgcccgg
      241 cgccgcccgg ggaacgccca cgcggcgcgc ggaaactccg gccgagcgcg aacagcgcct
      301 cgccgacgag gcctggctgc gccgcatccc ggacgaccca ggcgggttgc tgcgcgcacg
      361 cttccgcatc gaatacgaac gccgccagct gggaggcacg cgatgagccg gggcctgcgg
      421 ggcgtcgccg gggtgctgct ggtgctggtg gcgacgccgg ccttcgggca ggcgcgcgca
      481 tggctggagc gcgaccgcat cggcatcgac gagaccgtcg cgctcaacat cgaggccgaa
      541 caggccggcg cgccggcgcc ggactattcg ccgttgcagc gcgacttcgt cgtcagcggc
      601 aacaccagca gccgccagtt cgaactcgtc aacggcgtgg cccgttcgcg cgtcctctac
      661 tcggtggcgc tgcagccgcg ccggcagggg ctgctcgagg tgcctgcgct ggcggtcggc
      721 aacgcgcgca cctcgccgct caccctcgcc gtgaccgcgc cgcagtcggc accggcgcgc
      781 gcgggcgacg tcgtcttcat cgaggccgag gccgacgcgc agtcgcccta cgtgcagcag
      841 gcggtcggct ataccgtgcg cctgtactac gcgacgcagc tggtgtccgg cgagctcgac
      901 caggatccgc ccgacggcgc gaccctgcag cgcgtcggcg acgacgtgca gtacgagcgc
      961 gacgtgggcg gccgccatta ccacgtggtc gagcgccact acctgctgat tcccgagcac
     1021 agcggcacgc tcgccattcc cggcgcccgg ttcggcgggc gtggcgtcgg gggcctgttc
     1081 gacgacatgt tcggcaacgg cgatgccgac ctgcgcgcgg cgagcccgcc gcgcttcctg
     1141 agcgtgcgcc cgatccccgc caacgcgccg caaccctggc tgccgctgcg cgcgctcgcg
     1201 ctgcgctacg cgtcggcgcc gcgcggtgcg cgcgtgggcg aggcatcgac ggtgacggtc
     1261 gaggccgacg ccgacggcgc caccgccgcg cagttgccgg agctgcagct gcaggccgac
     1321 ggcgcgcagg tgttcgccga tccgccgcag gccgacgagc gcatcgtcga cggccgcccg
     1381 cgggtgcacc tgagccggcg cttctcgatc gtgcccgcgc gggcgggcgc gatgcgcatc
     1441 gccgggccgt cgctggcgtg gtgggacgtg cgcgcaggcg tggcgcgcac ggcatcgctg
     1501 cccg
//
LOCUS       DATIQC010000421         6902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_204495, whole genome shotgun sequence.
ACCESSION   DATIQC010000421 DATIQC010000000
VERSION     DATIQC010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6902
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204495"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..1436
                     /gene="hemA"
                     /locus_tag="VLM17_09060"
                     /pseudo
     CDS             160..1436
                     /gene="hemA"
                     /locus_tag="VLM17_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971212.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
     gene            1550..2635
                     /gene="prfA"
                     /locus_tag="VLM17_09065"
     CDS             1550..2635
                     /gene="prfA"
                     /locus_tag="VLM17_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HSR65732.1"
                     /translation="MIPTLRRKLEALVERREELERLLADPGVLADNERFRNFSREFAQ
                     LEPVARAFAEEARARRDLAAAEAMRGDPELRELADEEVAAAQARLAALETELMAELVP
                     KDPRDAGNLYLEVRAGTGGDEAAIFAGDLFRMYARYAERQGWKVEVESASPGEHGGYK
                     EIVARVEGRGAYSRLKFESGTHRVQRVPETESQGRIHTSAATVAIIAEDTSDIAVDVN
                     PADLKVDTFRSSGAGGQHVNKTESAIRITHLPSGIVVESQTERSQHANRDKAMKRLRA
                     MLVENEIARREAAQAADRKLQVGSGDRSQRIRTYNYPQGRITDHRVEGLTLYDLPQVL
                     EGSLDALVDRLARESQADALARLAAAG"
     gene            2784..4145
                     /gene="mgtE"
                     /locus_tag="VLM17_09070"
     CDS             2784..4145
                     /gene="mgtE"
                     /locus_tag="VLM17_09070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008266103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HSR65733.1"
                     /translation="MAEAVRHDKTARQLRLLSDALDSGRLGPVRRLVNSLAPAEIGNL
                     LESLPPAQRTVVWGLVDPEDDGEVLLHVGDEVREGLLADMDPDEIVAAVEDLDIDDLA
                     DLVEDLPDTVLDEVLKSMDRDNRERLEQVLSYDEGTAGRLMNPDVVTVRTDTTVDVVL
                     RYLRLRGELPDHTDHLYVVSRRHQYLGRIALQALLTSEPSTPVNRLIDDDQPAIGVEE
                     SEGGVARQFSDHDWISAPVVDDNNILLGRITIDDVVDIIREQAEHQALGAAGLDEDED
                     LFSPVKRATRRRLLWLTINLATAFIAASVVKEFQGTISQIVALAVLMPIVAGMGGNAG
                     TQVLALCVRGLALGQLGATNMRVLIWKEIRVALLNGLALGLILGLIVWAWFGEWPLAA
                     VIASALTINLLSAALAGVLVPMTLKRMGFDPALAGSVILTTVTDVMGFFSFLGLATLI
                     LLH"
     gene            4380..5225
                     /locus_tag="VLM17_09075"
     CDS             4380..5225
                     /locus_tag="VLM17_09075"
                     /inference="COORDINATES: protein motif:HMM:NF020252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HSR65734.1"
                     /translation="MDAGALRGRFLAVALARPEPFPEAQTSQFLARLRDASDGEGFSL
                     LRLPRLPAVVPQLLQALREDKAGMAAVAELAARDPLIAGGIVRVANSAWYGGEPLTSL
                     SQAVVRLGRDAVREVVLRTALRPIHPAAPGTPVHAAGERLWTHAQCCGIACASMGHGF
                     DGMLAGLAGATGASAALALLAQSEPELLHADAVHAAFARAMWRIAARAAQAWDLPGAV
                     VAALHDHAGAEARGGLGRGLAQAERLSMQYLLRRWEDPALVPSLQGGAEAVAWAALER
                     HHPDD"
     gene            complement(5222..6169)
                     /locus_tag="VLM17_09080"
     CDS             complement(5222..6169)
                     /locus_tag="VLM17_09080"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HSR65735.1"
                     /translation="MSMQLDASGRLRHLLTLEDLPRDVLLRLLDRAQQLATDARGGTA
                     LRGVLAGRTVCTLFFEPSTRTRSSFLLAAQRLGADTLVFDASTSSTTKGETAIDTLKT
                     LEAMGVQGFVVRHKVDGAVAALAQVAAPGTVLVNAGDGRTAHPTQGLLDMLTLRQAKG
                     DDFAALKVVIVGDVRHSRVARSDLHAMRALGIGEIRVCGPASLLPQDDTLAGCVVSHD
                     LDAALAGVDAVMMLRLQRERMQEGLVTSLDDYHADYGLTATRLRRAAPDAIVMHPGPM
                     NRGVEISDEVADGPQSVILRQVANGVAVRMAVLEALLGA"
     gene            complement(6206..6685)
                     /gene="ruvX"
                     /locus_tag="VLM17_09085"
     CDS             complement(6206..6685)
                     /gene="ruvX"
                     /locus_tag="VLM17_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017354953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HSR65736.1"
                     /translation="MPERPGDADTPRRDGTVLGFDVGARRIGVAVGSAFGHGARAIAV
                     VDVHHQQPDWPAIDRLQREWRPDGFVVGDPMTLDGGDQPIRRFAHAFAAELRARYRLP
                     VVLVDERASSIEAAQRFAVDRAEGRRKRRDAAVLDAVAAAVIVERWLAAPQDAQPVR"
     gene            complement(6678..>6902)
                     /locus_tag="VLM17_09090"
     CDS             complement(6678..>6902)
                     /locus_tag="VLM17_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HSR65737.1"
                     /translation="ALAAGSGPRSATIALGCAGWGAGQLEQELGENSWLTAPVDRDVL
                     FSLPLAARWQAAAGSIGVDLARMTDYSGHA"
BASE COUNT          951 a         2613 c         2460 g          878 t
ORIGIN      
        1 cctgcgcccg cgcggacgcg ggcccgaagg ccgccgcgag gaccagcacc agggcggaaa
       61 gacagcgtgt tcggcgacgg gctgggggca tgggcgcgcg gggcagtaaa ctgtggcgtc
      121 cagagtaacc gaagcgcctg aacgcacccg ccccggacca tgtcccacgt cgtcgccctc
      181 ggcatcaacc accagaccgc gccggtgcac ctgcgcgaac gggtggcctt tgccgatggc
      241 gctctgcccg gggcgctggc cgcgctccgc accctgcccg gcgtgcgcga agcggcgctg
      301 ctgtcgacct gcaaccgcac cgagctctac gcggtcgccg acgatccgcg cacgctgtcg
      361 gactggctgg ccgcgcacgc cgacgagggc gacgacctgc acgcctacct gtaccggcac
      421 gaggacggcg acgccgcccg ccacctgttc cgggtcgcca ccgggctgga ttcgctggtg
      481 ctcggcgagc cgcagatcct cggccaagtg tgcacgcctg ggccgccgcg cgcgccgccg
      541 gcgcgctcgg caaccagctc gaccggctgt tccagcaggc cttcgtcacc gccaagcgcg
      601 cacgcacgga tacgcgcatc ggcgccaatc cggtgtcggt ggcctccgcc gccgtgcgcc
      661 tcgcgcagga gtcgttcgcg cggccgcagg attcggcggt gctgctgatc ggcgccggcg
      721 aaaccatcga actggtcgcc cgccacctcg cgcaggcgaa ggtcaagcgc ctgctgatcg
      781 ccaaccgcac cctcgcgcac gcgcaggaac tcgccagtcg ccatggcggc gtcgccctgc
      841 cgctgtccga aatcgaccgc cacctcgcgg aagccgacat cgtgttctcg gccaccgcca
      901 gccgcgcgcc gatcctgcac cgcgggcagg tcggcgccgc gctcgcccag cgccggcacc
      961 ggccgatgct gctgctcgac ctcgcggtgc cgcgcgacat cgccgccgac gtcagcggcc
     1021 tcaccgacgc cttcctctac accgtcgacg acctcgagaa ggtggtcgag gacaaccgcc
     1081 gcagccgccg cgaagcggcc gacgcggcag aggccatcgt cgacctgcag gtcgcccgct
     1141 tccgcgagtc gctgctcgcc agccagcatg cggagccgtt gcgccgcctg cgcgcgcacg
     1201 gcgagcaggc gcgggccgcg gtgctggcgc gggcgcgcca gcagctcgcc aacggccagg
     1261 atccgcaggc cgtgctcgac ttcctcgccc acacgctgac caaccgcctg ctgcacgcgc
     1321 cgaccacggc cctgcgccac gccgcgctgc agggcgatgc ggacgtggta cgcgcggcgg
     1381 agaagctctt cccggccggc gacgccacgc cggacggcga cggcgacgag ccttagcgac
     1441 gcgtttcctc catcgacggg cgccacgcgt gcccgccgcc ggacgcgcgc tgcgtccgga
     1501 tgacgaccgt cctggccgcc cgccatcttc ccttcccgac accggaccca tgatccccac
     1561 cctgcgccgc aagctcgaag cgctggtcga acgccgcgag gaactcgagc gcctgctcgc
     1621 cgaccccggg gtgctcgccg acaacgagcg tttccgcaat ttctcgcgcg agttcgccca
     1681 gctggagccg gtcgcgcgcg ccttcgccga ggaggcgcgg gcgcgccgcg acctcgcggc
     1741 ggcggaggcg atgcgcggcg accccgaact gcgcgaactg gccgacgagg aagtcgccgc
     1801 cgcccaggcg cgcctggccg cgctcgaaac cgagttgatg gcggaactgg tcccgaagga
     1861 tccgcgcgac gcaggcaacc tgtacctcga ggtgcgcgcc ggcaccggcg gcgacgaggc
     1921 cgcgatcttc gccggcgacc tgttccgcat gtacgcgcgt tacgcggagc ggcagggctg
     1981 gaaggtcgag gtcgaatcgg ccagcccggg cgagcacggc ggctacaagg agatcgtcgc
     2041 gcgcgtcgag ggacgcggcg cctattccag gctcaagttc gaatcgggca cgcatcgcgt
     2101 gcagcgcgtg ccggaaaccg agtcgcaggg ccgcatccac acgtccgccg cgacggtggc
     2161 gatcatcgcc gaggacacca gcgacatcgc cgtcgacgtg aatcccgccg acctcaaggt
     2221 cgacaccttc cgctcctccg gcgcgggcgg ccagcacgtc aacaagaccg aatcggcgat
     2281 ccgcatcacc cacctgccga gcggcatcgt ggtcgagtcg cagaccgagc gcagccagca
     2341 cgcgaaccgc gacaaggcga tgaagcggct gcgcgcgatg ctggtcgaga acgagatcgc
     2401 ccggcgcgaa gccgcgcagg ccgcggaccg caagctgcag gtcggcagcg gcgaccgcag
     2461 ccagcgcatc cgcacctaca actacccgca gggccgcatc accgaccacc gcgtcgaggg
     2521 cctcaccctg tacgacctgc cgcaggtgct cgaaggcagc ctcgacgccc tggtcgaccg
     2581 gctcgcgcgc gaatcgcagg ccgacgcgct ggcgcgactg gcggccgcgg gctgatcacc
     2641 gtcctcgcgc gcgtcgtcga cgcgaaccgc gcgcatggca ggccggacgg ggtgggcaag
     2701 cccgcgcttc gcggcgataa tgcccgcatg aacgcctgac cctgtcgcgc cctcgtgccg
     2761 cgacgcgcca ccggaagccc tccatggccg aagccgtccg ccacgacaag accgcgcgcc
     2821 agctgcgcct gctgtcggac gcgctcgaca gcggccgcct cgggccggtg cgacggctgg
     2881 tcaattcgct cgcgcccgcc gagatcggca acctgctcga atcgctgccg cccgcgcagc
     2941 gcaccgtggt gtggggcctg gtcgacccgg aggacgacgg cgaggtgctg ctgcacgtcg
     3001 gcgacgaggt gcgcgagggc ctgctcgcgg acatggatcc ggacgagatc gtggcggcgg
     3061 tcgaggacct cgacatcgac gacctcgccg acctcgtcga ggatttgccc gacacggtgc
     3121 tcgacgaagt cctcaagtcg atggaccgcg acaaccgcga gcgcctcgag caggtgctgt
     3181 cctacgacga aggcaccgcc ggccgcctga tgaaccccga cgtggtgacg gtgcgcaccg
     3241 acaccaccgt cgacgtcgtg ctgcgctacc tgcgcctgcg cggcgagctg ccggaccaca
     3301 ccgaccacct gtacgtggtc agccgccgcc accagtacct cggccgcatc gcgctgcagg
     3361 cgctgttgac cagcgagccg agcacgccgg tcaaccggct gatcgacgac gaccagccgg
     3421 cgatcggcgt cgaggaatcc gaaggcggcg tcgcgcgcca gttctccgac cacgactgga
     3481 tcagcgcgcc ggtggtcgac gacaacaaca tcctgctcgg ccgcatcacc atcgacgacg
     3541 tcgtcgacat catccgcgag caggccgagc accaggccct cggcgcggcc ggcctcgacg
     3601 aggacgagga cctgttctcg ccggtcaagc gcgcgacccg gcgccgcctg ctgtggctga
     3661 cgatcaatct cgccaccgcc ttcatcgccg cctcggtggt caaggagttc cagggcacga
     3721 tctcgcagat cgtcgcgctc gcggtgctga tgccgatcgt cgccggcatg ggcggcaacg
     3781 ccggcaccca ggtgctggcg ctgtgcgtgc gcggcctcgc cctcggccag ctaggcgcca
     3841 ccaacatgcg cgtgctgatc tggaaggaga tccgcgtcgc cctcctcaac ggcctcgcgc
     3901 tggggctgat cctcggcctg atcgtctggg cctggttcgg cgaatggccg ctcgcggcgg
     3961 tgatcgccag cgcgctcacc atcaacctgc tgtccgccgc gctggccggc gtgctggtgc
     4021 cgatgaccct caagcgcatg ggcttcgacc cggcgctggc cggcagcgtc atcctgacca
     4081 cggtcaccga cgtgatgggg ttcttcagct tcctcgggct ggcgacgctg atcctgctgc
     4141 actgatcctg ctgcactgat cctgccgcac tgatcctgct gcaccgatcc tgccgccccg
     4201 ggcgctcaag ggcggcgcgg tcgcggccga taccgttgcg ggcccccctt gcgccggtcg
     4261 ccatgctcgc cttcctgtcc cgctggttgc gtcccgtggc gcccgcctcg atgccgggcg
     4321 gatcgcagcg cgcggcggac ccgggcccgg acgcgccggc gccggcgccg cttccgccgg
     4381 tggatgccgg cgccctgcgc ggccgcttcc tcgcggtcgc gctcgcccgc ccggagccgt
     4441 tccccgaggc gcagaccagc cagttcctgg cccgcctgcg cgacgcttcc gacggcgagg
     4501 gcttcagcct gctgcgcctg ccgcgcctgc cggcggtggt cccgcaactg ctgcaggccc
     4561 tgcgcgagga caaggccggc atggccgcgg tcgccgaact cgccgcgcgc gatccgctga
     4621 tcgcgggcgg catcgtgcgg gtcgcgaaca gcgcctggta cggcggcgaa ccgctgacca
     4681 gcctgtcgca ggccgtggtg cgactgggcc gcgacgccgt gcgggaagtg gtgctgcgca
     4741 ccgcgttgcg gcccatccac ccggccgctc ccggcacccc cgtgcatgcg gccggcgaac
     4801 gcctgtggac gcacgcgcaa tgctgcggca tcgcctgcgc ctccatgggc catgggttcg
     4861 acggaatgct ggcgggcctg gccggcgcca cgggtgccag cgcggccctg gccctgctcg
     4921 cccagagcga accggaactg ctgcatgcgg acgccgtgca cgccgccttt gcccgcgcca
     4981 tgtggcggat cgccgcccgc gccgcgcagg cctgggacct gccgggagcg gtggtggcgg
     5041 ccctgcacga ccatgccggg gccgaggcgc gcggcggact cggccgcggc ctcgcgcagg
     5101 cggaacggct gtcgatgcag tacctgttgc ggcgctggga ggatccggcg ctggtcccgt
     5161 cgctgcaggg tggtgcggag gccgtggcct gggcggcgct ggagcgccac cacccggacg
     5221 actaggcgcc cagcagggcc tcgagcaccg ccatccgcac cgccacgccg ttggcgacct
     5281 ggcgcaggat caccgactgc gggccgtcgg cgacttcgtc ggaaatctca acgccgcggt
     5341 tcatcggccc gggatgcatc acgatcgcgt ccggcgcggc gcggcgcagg cgcgtggcgg
     5401 tcagcccgta gtcggcgtgg tagtcgtcga gcgaggtgac cagcccttcc tgcatgcgct
     5461 cgcgctgcag gcgcagcatc atcaccgcgt cgacgcccgc gagcgccgcg tcgaggtcgt
     5521 gcgagaccac gcaacccgcc agcgtgtcgt cctgcggcag cagcgaggcc gggccgcaca
     5581 cgcggatctc gccgatgccg agcgcgcgca tcgcgtgcag gtcggagcgg gccacgcgcg
     5641 aatggcgcac gtcgccgacg atcaccacct tcagcgcggc gaagtcgtcg cccttggcct
     5701 ggcgcagggt gagcatgtcg agcagcccct gggtcggatg cgcggtgcgc ccgtcgccgg
     5761 cgttgaccag aacggtgccg ggcgcggcga cctgcgccag cgcggcgacc gcgccgtcga
     5821 ccttgtgccg cacgacgaag ccctgcacgc ccatcgcctc cagcgtcttc aacgtgtcga
     5881 tcgcggtctc gcccttggtg gtcgaggagg tcgacgcgtc gaagacgagc gtgtccgcgc
     5941 cgagccgctg cgcggcgagc aggaagctcg aacgggtgcg cgtggagggc tcgaagaaca
     6001 gcgtgcacac cgtcctgccg gcgagtaccc cgcgtagcgc ggtgccgccg cgcgcgtccg
     6061 tcgcgagctg ctgggcgcgg tcgagcagcc gcagcagcac gtcgcgcggc aggtcttcca
     6121 gggtcagcag gtggcgcagg cggccgctgg cgtcgagttg catgctcatt cgttcggtcg
     6181 ggtgtcggca gggaagaaga aggggtcagc gcaccggctg cgcatcctgc ggggcggcga
     6241 gccagcgctc gacgatcacc gcggcggcga ccgcgtccag cacggccgcg tcgcggcgct
     6301 tgcggcggcc ttcggcgcgg tcgacggcga agcgctgcgc ggcctcgatc gaactggcgc
     6361 gctcgtcgac cagcaccacc ggcaggcggt agcgcgcgcg cagctcggcg gcgaaggcgt
     6421 gggcgaagcg gcggatcggc tggtcgccgc cgtcgagggt catcgggtcg ccgacgacga
     6481 agccgtcggg gcgccactcg cgctgaaggc gatcgatcgc gggccagtcg ggttgctggt
     6541 ggtgcacgtc caccacggcg atcgcgcgcg cgccgtggcc gaacgcgctg ccgacggcga
     6601 cgccgatgcg gcgcgcgccg acgtcgaagc cgagcacggt gccgtcgcgg cgcggcgtgt
     6661 cggcgtcgcc gggccgctca ggcatggccg ctgtagtccg tcatgcgcgc caggtccacg
     6721 ccgatgctgc cggcggcggc ctgccagcgc gcggccagcg gcagcgagaa cagcacgtcg
     6781 cggtccaccg gcgcggtgag ccagctgttt tcgcccagct cctgttcgag ctgccccgcg
     6841 ccccagcccg cgcagcccag cgcgatggtg gccgagcgcg gcccgctgcc ggcggcgagc
     6901 gc
//
LOCUS       DATIQC010000422         3626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_416340, whole genome shotgun sequence.
ACCESSION   DATIQC010000422 DATIQC010000000
VERSION     DATIQC010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416340"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..716)
                     /locus_tag="VLM17_09095"
     CDS             complement(<1..716)
                     /locus_tag="VLM17_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017154679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HSR65738.1"
                     /translation="MPATRPSRLSLFLALALAAGSVFAGDAFAGNVEDGRAQNAVRVI
                     DQIQAIPESAIPDKLLDEARAIVVIPDTIKAGLFLGGRFGRGLLSVKSPDGTWSNPSF
                     VTLTGGSIGLQAGVQSSDIVLVFRSDRGLESIVNGKFTLGADAGVAAGPVGRSASAAT
                     DGEMKAEIWSWSRARGLFAGVALDGAVLAIDDAANAATYGDVTPRMIFENRLPQPPSA
                     AVVAFRDRLEEASASAHAAR"
     gene            945..1901
                     /gene="hemH"
                     /locus_tag="VLM17_09100"
     CDS             945..1901
                     /gene="hemH"
                     /locus_tag="VLM17_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HSR65739.1"
                     /translation="MPAPDTAVLLVNLGTPEAPTPAAVRRYLAEFLSDPRVVSLPALL
                     WQPLLRGVILPLRGMRVAEKYASIWLPGGSPLAVHTRALAEAVQQRLPDWRVASAMRY
                     GTPPLRQVLEGLRANGARRVLVLPLYPQYSTTTTASVADVVAATGIDALLVDDYHLDP
                     GWIAAVAGSIRAQRAAGGNGAHLLFSFHGLPQRLVEAGDPYQRQCEQSARAIARALCL
                     DDDAWSLAYQSRFGRERWLGPSTAEALDALAARGVRLVDVACPGFAVDCLETLEEVAM
                     MLAERFRGRGGTLRYVPCLNAAPAHADALAAIARRALAGASA"
     gene            1898..2761
                     /locus_tag="VLM17_09105"
     CDS             1898..2761
                     /locus_tag="VLM17_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005420457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HSR65740.1"
                     /translation="MSLREFVLDIPMGRIAGLRQGNAGQPRVLALHGWLDNAASFVPL
                     AAHLPGLDLVAPDIPGHGRSTHLPPGGDYSFANAVQSTLDIADALGWERFALLGHSMG
                     AGIASLVAAACPQRIERFVAVEALGALSEVPERTVARLRDAVVATRALPGKRLRVFPD
                     IATAAQARMQANGLSEPVARLLVERGLDPVEGGFAWSSDPRLTLPTMIRTTEPQVDDL
                     VRGIECPTLVVYADPAQPYLPDPLRRRRAALLPRGRMVVLPGTHHLHMETPRPVAEAI
                     VGFLRGEADAG"
     gene            complement(2843..3343)
                     /locus_tag="VLM17_09110"
     CDS             complement(2843..3343)
                     /locus_tag="VLM17_09110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65741.1"
                     /translation="MQRVLLLAVLACTAAACGKSPGERVAEAAVSAASGQKVSVDKDG
                     GQVTFKTDQGDVRVSSGDAATLPATFPKDVHLPPGYKVESAMQSADAIILGLAVPGDL
                     ARLAGDTERAMAADGWKQQTAMQSGQGKLYMYEKDKRSAMISLAQGDDGQVRMGVQLA
                     TQGTSN"
     gene            complement(3409..>3626)
                     /locus_tag="VLM17_09115"
     CDS             complement(3409..>3626)
                     /locus_tag="VLM17_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003476743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSR65742.1"
                     /translation="SVALDLSLVLARPCAFEYVLVHELCHLIHPDHSRRFWREVEARC
                     PDWRTERAYFRTEGRRLKATLRALLAA"
BASE COUNT          431 a         1350 c         1328 g          517 t
ORIGIN      
        1 ctgcgcgcgg catgcgcgct ggcgctcgcc tcctcgaggc ggtcgcggaa agccaccacc
       61 gccgccgatg gcggctgcgg caggcggttc tcgaagatca tgcgcggcgt gacgtcgccg
      121 taggtcgccg cgttggcggc gtcgtcgatc gcgagcaccg cgccgtcgag ggcgacaccg
      181 gcgaacaggc cgcgcgcgcg cgaccacgac cagatttccg ccttcatctc gccgtcggtc
      241 gcggcggacg cgctgcggcc gaccggcccc gcggcgacgc cggcatccgc gccgagggtg
      301 aacttgccgt tgacgatgga ctccaggccg cggtcgctgc ggaacaccag cacgatgtcg
      361 gaggactgca cgccggcctg caggccgatg ctgccgccgg tcagggtcac gaagctcggg
      421 ttcgaccagg tgccgtcggg cgatttcacc gatagcaggc cgcgtccgaa gcggccgccg
      481 aggaacaggc ccgccttgat ggtgtcgggg atgaccacga tcgcgcgcgc ctcgtcgagc
      541 agcttgtcgg ggatcgccga ttcggggatc gcctggatct ggtcgatcac ccgcaccgcg
      601 ttctgcgcgc gtccgtcttc gacgttgccg gcgaacgcgt cgccggcgaa cacgctgccg
      661 gcggcgagcg ccagggcgag gaacagcgac aggcgggacg ggcgcgtggc gggcatcggc
      721 gtggctccgg aaagacagcg ggagttcagg ctagtcgcca ggggatgaat cgcgactggc
      781 tgcgcgtgcg ttgcctgcgc gccatgcgcg tcgtcgcgcg cgcgacggtg cgcgcgcccg
      841 gcctccatcg tcgggcttgc ctgcagccag gtgtccgggg aggtcgacca tcgggcgggc
      901 aaaggcctgc tgcgcgcgcg cgcctcgcct gccatcctat gccgatgcct gcgcccgaca
      961 ccgccgtcct gctcgtcaac ctcggcacgc ccgaggcgcc gacgcccgcc gcggtacgcc
     1021 gctatctcgc cgaattcctg tccgatccgc gcgtggtctc gctgccggcc ctgctctggc
     1081 agccgctgct gcgcggcgtg atcctgccgc tgcgcggcat gcgggtggcg gagaagtacg
     1141 cgtcgatctg gttgccgggc ggttcgccgc tggcggtgca cacgcgcgcg ctcgccgagg
     1201 ccgtgcagca gcgcctgccc gactggcgcg tggccagcgc gatgcgctac ggcacgccgc
     1261 cgctgcgcca ggtgctcgag ggcctgcgcg cgaacggtgc ccggcgcgtg ctcgtgctgc
     1321 cgctgtaccc gcagtattcg acgacgacca ccgcgtcggt ggccgacgtg gtggcggcca
     1381 ccggcatcga cgcgctgctg gtcgacgact accacctcga cccgggctgg atcgctgcgg
     1441 tcgccggctc catccgcgcg cagcgcgccg ccggcggcaa cggcgcgcac ctgctgttct
     1501 ccttccatgg cctgccgcag cggctggtcg aggccggcga tccctaccag cggcagtgcg
     1561 agcagagcgc gcgcgccatc gcgcgggcgc tctgcctgga cgacgacgcc tggtcgctcg
     1621 cctaccagtc gcgtttcggc cgcgagcgct ggctcggccc gtcgacggcc gaggcgctcg
     1681 acgcgctggc cgcgcgcggc gtgcgcctgg tcgacgtcgc ctgcccgggt ttcgcggtcg
     1741 actgcctgga aacgctggag gaagtggcga tgatgctggc cgaacgcttc cgcgggcgcg
     1801 gcggcacgct gcgctacgtg ccctgcctca atgccgcgcc ggcgcacgcc gatgcgctgg
     1861 cggcgatcgc ccgccgcgcg ttggcgggcg cgtccgcgtg agcctgcgcg aattcgtcct
     1921 cgacatcccg atgggccgca tcgccggcct gcgccagggc aacgcgggcc aaccacgcgt
     1981 gctggcactg cacggctggc tcgacaacgc ggcgagcttc gtgccgctcg cggcgcacct
     2041 gcccgggctc gatctcgtcg cgcccgacat tccggggcat ggccgcagca cgcacctgcc
     2101 gccgggcggc gactactcct tcgccaacgc cgtgcagtcc acgctggaca tcgccgacgc
     2161 gctcggctgg gagcgtttcg cgctgctcgg gcattcgatg ggcgcgggca tcgccagcct
     2221 ggtcgccgcc gcctgcccgc agcgcatcga gcgcttcgtc gcggtcgagg cgctcggcgc
     2281 gttgtcggag gtcccggagc gcacggtcgc gcgcctgcgc gatgcggtcg tcgccacccg
     2341 cgcgctgccc ggcaagcgcc tgcgcgtgtt ccccgacatc gccaccgccg cgcaggcgcg
     2401 catgcaggcc aacggcctga gcgaaccggt cgcgcggctg ctggtggaac gcgggctcga
     2461 cccggtcgag ggcggtttcg cctggagcag cgacccgcgc ctcaccctgc cgacgatgat
     2521 ccgcacgacc gaaccgcagg tcgacgacct ggtgcgcggc atcgagtgcc cgacgctggt
     2581 ggtgtacgcc gatccggcgc agccctacct gcccgatccg ctgcgccgtc gccgggcggc
     2641 gctgctgccg cgcggccgga tggtggtgct gccgggcacc caccacctgc acatggaaac
     2701 gccgcggccg gtggccgagg cgatcgttgg cttcctgcgc ggcgaggcgg acgccggctg
     2761 acgcggcgcg cggggcgcct tccgtccctc cggcgcagcg tgcccgcacg cgcggcaggc
     2821 accgcttcgc ccgatgggtc agtcagttcg acgtcccctg cgtcgccagc tgcacgccca
     2881 tgcgcacctg gccgtcgtcg ccctgcgcca ggctgatcat cgcgctgcgc ttgtccttct
     2941 cgtacatgta gagcttgccc tgaccgctct gcatcgccgt ctgctgcttc cagccgtcgg
     3001 ccgccatcgc gcgctcggtg tcgccggcga gcctggcgag gtcgccgggc accgcgaggc
     3061 cgaggatgat cgcgtcggcc gactgcatcg cgctctcgac cttgtagccg ggcggcaggt
     3121 gcacgtcctt cgggaacgtc gccggcagcg tcgcggcgtc gccgctgctg acccgcacgt
     3181 cgccctggtc ggtcttgaag gtgacctggc cgccgtcctt gtcgaccgag accttctggc
     3241 cggaggcggc ggacacggcg gcttcggcga cgcgctcgcc cggcgacttg ccgcaggcgg
     3301 cggcggtgca ggccagcacc gccaggagaa ggactcgttg catttcgatg gacccccggg
     3361 tggatgccgg cacccgccgg cattccccac acaacgcgtc cgtgccgcct aggcggccag
     3421 cagcgcgcgc agcgtggcct tgagccggcg gccttcggtg cggaaatagg cgcgctcggt
     3481 gcgccagtcg gggcagcgcg cctcgacctc gcgccagaag cggcgcgaat ggtccgggtg
     3541 gatcaggtgg cagagctcgt ggaccagcac gtactcgaac gcgcacggac gcgccagcac
     3601 cagcgagagg tcgagcgcga cgctgg
//
LOCUS       DATIQC010000423         1725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_275356, whole genome shotgun sequence.
ACCESSION   DATIQC010000423 DATIQC010000000
VERSION     DATIQC010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275356"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1224
                     /locus_tag="VLM17_09120"
     CDS             <1..1224
                     /locus_tag="VLM17_09120"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR65743.1"
                     /translation="MLAHELRNPLAPIRNALQVLALDDRDTVRRRTLRAVMMRQVDHM
                     VRLVDDLLETSRLSQGQIRLRRETIDLRDPLRAAIEQSRPHFEAAGQTLEVALPDGGV
                     PVNADPVRMAQVFGNLLNNAARYGRDGGATRIEARCEFGTAVVTVSDDGIGMDAELLP
                     RVFDLFSRGHRQHQLRDGLGIGLALVRGLVTLHGGSVEAHSDGVGRGARFVVELPLVA
                     GLPKAPRPESDLSEPLAGGLRALVVDDNEDAARTLALVLEALDVEPRIATSGREALDA
                     LPEFRPDVVLLDIGMPDMDGYQVAERIRAMPEHADVLLVAITGWSQAQDQRRTRQAGF
                     DHHFSKPPDLRALAHALQEHSPARFQPLPEHPPLPASLVASPQPGYQLGDALHFDGGQ
                     ASGPMPHAVRAPDPG"
     gene            complement(1243..>1725)
                     /locus_tag="VLM17_09125"
     CDS             complement(1243..>1725)
                     /locus_tag="VLM17_09125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65744.1"
                     /translation="ANVIDLDARRPRPAWVRPAYALAASLLVVAASLWLRDAGGPLRV
                     QEDGRLVARGELARALDGALASEPRADAAVAIGLSFRAQDGHACRSFSLQGLAGLACR
                     SGDAWNIAVLAHAAAGAGDVRQAGSAIPPEVQAAIDARMQGDAFDAAQERAARAGGWR
                     "
BASE COUNT          227 a          643 c          643 g          212 t
ORIGIN      
        1 atgctcgcgc atgaactgcg caatccgctc gccccgatcc gcaacgcgct gcaggtgctc
       61 gccctggacg accgcgacac ggtgcggcgg cgcaccctgc gcgcggtgat gatgcgccag
      121 gtggaccaca tggtgcgcct ggtggacgac ctgctggaaa cgtcgcggct gtcgcagggc
      181 cagatccgcc tgcggcgcga aaccatcgac ctgcgcgacc cgctgcgggc ggcgatcgag
      241 cagtcgcgac cgcacttcga ggccgccggc cagaccctcg aggtggcgct cccggacggt
      301 ggcgtgccgg tgaacgccga tccggtgcgg atggcccagg tcttcggcaa cctgctcaac
      361 aacgccgccc gctacggacg cgatggcggc gcgacgcgca tcgaggcgcg ctgcgaattc
      421 ggcacggcgg tggtcaccgt cagcgacgac ggcatcggca tggacgccga actgctgccg
      481 cgcgtgttcg acctgttcag tcgcgggcac cgccagcacc agctgcgcga cggcctcggc
      541 atcggcctcg ccctcgtgcg cgggctggtg accctgcatg gcggttcggt cgaggcccac
      601 agcgacggcg tcggccgcgg cgcgcgcttc gtcgtcgaat tgccgctggt cgccggcctg
      661 ccgaaggcgc cgcgccccga gagcgacctg tccgaacccc tcgccggtgg cctgcgtgcg
      721 ctggtggtgg acgacaacga ggacgccgcg cgcacgctcg ccctggtgct ggaggcgctg
      781 gatgtcgaac cgcgcatcgc caccagcggc cgcgaggcgc tcgacgcgct gccggagttc
      841 aggcccgacg tggtgctgct ggacatcggc atgccggaca tggacggcta ccaggtggcc
      901 gagcgcatcc gcgcgatgcc ggaacacgcc gacgtcctgc tggtggcgat caccggatgg
      961 agccaggcgc aggaccagcg acgcacccgc caggccggtt tcgaccacca cttcagcaag
     1021 ccgcccgacc tgcgcgcgct ggcccacgcc ctgcaggagc acagtcccgc gcggttccag
     1081 cccttgccgg agcatccgcc gctgccggcg agcctcgtcg cgtccccgca gcccggttac
     1141 cagctcggcg acgcgctgca tttcgacggc gggcaggcat cggggccgat gccccacgcg
     1201 gtgcgcgcgc ccgacccggg ctgaggcgtc ccgtcctcgc cgtcagcgcc agccgccggc
     1261 gcgggcggcg cgttcctgcg cggcgtcgaa ggcgtcgccc tgcatgcgtg cgtcgatcgc
     1321 ggcctgcact tccggcggga tcgcgctgcc ggcctggcgg acgtcgccgg cgcccgcagc
     1381 ggcatgggcg aggacggcga tgttccaggc gtcgccgctg cggcaggcca ggccggcgag
     1441 gccctgcagg gagaaactgc ggcaggcgtg gccgtcctgc gcgcggaagc tcaggccgat
     1501 ggcgacggcg gcatcggccc gcggctcgct ggcgagtgcg ccgtccagcg cgcgtgcgag
     1561 ttcgccgcgc gcgacgaggc ggccatcctc ctgcacgcgc aggggaccgc cggcgtcgcg
     1621 cagccacagg ctggcggcga ccacgagcag cgacgcggcg agggcatagg ccgggcgcac
     1681 ccacgcggga cgcgggcgac gcgcgtccag gtcgatcacg ttggc
//
LOCUS       DATIQC010000424         6695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_380747, whole genome shotgun sequence.
ACCESSION   DATIQC010000424 DATIQC010000000
VERSION     DATIQC010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6695
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380747"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..2686)
                     /locus_tag="VLM17_09130"
     CDS             complement(197..2686)
                     /locus_tag="VLM17_09130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HSR65745.1"
                     /translation="MSVLVPVLAVLIAGAFAAYHRLRLATWVAITACALVACWLLGAS
                     HAAVLAMAVLLVLVALPLLLPAIRKPLITAPLLSFYTKLLPPLSDTERTALEAGTVGF
                     EGELFSGKPDWRQLLAQPKPELTAEEQAFLDGPCEQLCRMVDDWDISHVRADLPPELW
                     DYIKRNKFFGLNIPTEYGGLGFSALMNHKVIQKLATISSTVSSTVGVPNSLGPAELLM
                     HYGTEEQKRHYLPRLADGREVPCFALTGPFAGSDATSIPDYGIVCTGDWNGASVLGIR
                     LTLNKRYITLAPVATLVGVAFRMYDPDGLLGDTRDIGISLALVPHDTPGLEIGRRHFP
                     LNTPFQNGPVRGRDVFVPLSQLIGGEDYAGRGWQMLMECLSIGRSITLPSTASGGAKM
                     GAVVTGAYARIRKQFGLSIGRFEGVEEVLARIAGRAYATSALAQATAAAVARGENPAV
                     PSTIAKYHCTEMGREVSRDVMDIHGGKGIILGPRNYAGRSWQATPIMITVEGANIMTR
                     SLMIFGQGAILCHPWVLKEMKAAQLEDARARVDQFDAALFGHIGYAISNAVRALWFGL
                     TGSRVGKAPGDDYTRRFYRKLDRYSAALAVMADTSMLLLGGKLKFKESLSGRLGDVLS
                     QLYICSAMLKRYEDQGRPQGDQPLLAWAFHDSINKIETALSGALRNFPIRPVGWLLWA
                     LVFPFGRRAQAPGDRLGRRVAALMMTPCDARARMADGVFLTPGEHNPAGRIDSYLPKV
                     VLAEPVERKFLKALKQHDIEALEFDAQLDEGVREGWITADERKQLEELRAMTLDAISV
                     DDFESWELRAASYYGEFGDEAAPVANPRAAA"
     gene            2848..3462
                     /locus_tag="VLM17_09135"
     CDS             2848..3462
                     /locus_tag="VLM17_09135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012511862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HSR65746.1"
                     /translation="MTTDAPAKAERTGRLSADDWAQAALDLIAEQGVAAVAVEPLARR
                     LGVTKGSFYWHFPSRDALLQAALERWEKTEQETVFGSLEAVPDPRERLRALFQLVAHE
                     ATSHIVYSELLKALDHPIVQPVIGRVSQRRFDYLTAAFRHAGLSRTDAQHRARLAYAA
                     YVGFLQLSLQLTQPRLAHDEFEAYVEHMMATLIPASPGGAANAG"
     gene            3548..5302
                     /locus_tag="VLM17_09140"
     CDS             3548..5302
                     /locus_tag="VLM17_09140"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015446819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017076 - purine nucleotide binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (GTP)"
                     /protein_id="HSR65747.1"
                     /translation="MGSRLDALNQWVLEVARLTRPAAIHWCDGSDTENAQLVAQMEAD
                     GTLVRLNEETHPNSWLHRSHPDDVARVEHLTFVCTSEREDAGPNNHWMAPADAHAKMD
                     ALFAGCMRGRTMYVIPYCMGPIDSPLSRCGVEVTDSPYVVANMRVMTRMGAAALARIE
                     REGSFVKGLHSIGELDPERRFIVHFPEELTIKSFGSGYGGNALLGKKCHALRIASHQA
                     RSEGWLAEHMLILGIENPQGDTHYIAAAFPSACGKTNLAMLIPPEAYRQDGWKVWTIG
                     DDICWMRPGPDGRLYAINPEAGFFGVAPGTSINSNPNALETIAHDTIFTNVAVTADNQ
                     PWWEGLNQGKPAIDWRGNDYDFSKGTPAAHPNSRFTVSAKQCPSYSPKAEDAQGVPIS
                     AIVFGGRRASLVPLVFEARDWTHGVLVGAAMGSETTAAATGAVGVMRRDPMAMKPFCG
                     YNFADYFAHWLSFDRDGARLPKVFHVNWFRKGDDGKFLWPGFGDNLRVLEWMIKRVEG
                     RAGAVETPIGNLPRQAELNLEGVPLSDEARDKLFGFDADGWRNEFASIGDYLREYGPR
                     MPDALHAEQQRIAGALGG"
     gene            5302..5877
                     /locus_tag="VLM17_09145"
     CDS             5302..5877
                     /locus_tag="VLM17_09145"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HSR65748.1"
                     /translation="MAIDTRAPAPTRRFEVDGLQVRVFDGLLPDAADYARALAAAAFK
                     RTEVARPDTAGYKHWVTEIALQALRQQPILRITEEAIATFASSAYAPYRAYTNVASYG
                     DMLFTHTDCLPGQHELTALWFICEDWDIEWGGETVFFDSAGEIACAIRPRPGRLVVFD
                     GAILHAGRPPHRICYHPRYTLAIKFERDRSR"
     gene            5930..>6695
                     /locus_tag="VLM17_09150"
     CDS             5930..>6695
                     /locus_tag="VLM17_09150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65749.1"
                     /translation="MGRGVFHLLRVDRALLADAAFLDNRLPVDWTQATLVPAAAVPTP
                     RTAPGWLWHTSFCGSTLLARMLDVDPHAVVLREPLVLRRLSDARHGNKPWREFIPATN
                     SLLGRDWNGAKAVVKPTHAALNVASEVMAADPGSRAILLSSSLEDFVVSHLKKQPETL
                     QRIPLLAERALSASGFHQRLAPAALQPPTLLAAATLQWAAQREVMADLQQALRDRVLA
                     VDWAELQQDPVAQAQRCAAWLELPVAPAMLERHVLRV"
BASE COUNT         1024 a         2365 c         2317 g          989 t
ORIGIN      
        1 ggcgccaagg tcaagaagga gcagtacggc cccggctcca gcctcgagca gcgttacggc
       61 ggcggggcgg ccgagatccg gctcgagact ttctccggcg acgcggagct gagcttcgat
      121 tagcgcagag tcgcggcgcg gtcagacgaa aacggcgggc attgcccgcc gttttcgcga
      181 gtccctgcag cgcgcgtcat gccgccgcgc gcgggttcgc caccggcgcg gcttcgtcgc
      241 cgaattcgcc gtagtacgag gcggcgcgca gttcccacga ctcgaagtcg tcgacgctga
      301 tcgcatccag ggtcatcgcg cgcagctcct cgagctgttt gcgctcgtcc gccgtgatcc
      361 agccctcgcg cacgccctcg tcgagctgcg cgtcgaactc cagcgcctcg atgtcgtgct
      421 gcttgagcgc cttgaggaac ttgcgctcca cgggttcggc cagcaccacc ttcggcaggt
      481 agctgtcgat gcgcccggcc gggttgtgct cccccggcgt caggaacacg ccatcggcca
      541 tccgcgcgcg cgcgtcgcag ggtgtcatca tcagggccgc gacgcggcgg ccgaggcgat
      601 cgcccggggc ctgcgcgcgg cggccgaacg ggaagaccag cgcccacagc agccagccga
      661 ccgggcggat cgggaagttg cgcagcgcgc cggagagtgc ggtctcgatc ttgttgatgc
      721 tgtcgtggaa ggcccaggcg agcagtggct ggtcgccctg cgggcggccc tggtcctcgt
      781 aacgcttgag catcgcgctg cagatgtaga gctggctgag cacgtcgccc agtcgcccgg
      841 acagcgattc cttgaacttc agcttgccgc cgagcagcag catcgaggtg tcggccatca
      901 ccgccagcgc ggccgagtag cggtcgagct tgcgatagaa gcgccgggtg tagtcgtcgc
      961 ccggcgcctt gccgacgcgc gagccggtca ggccgaacca cagcgcgcgc accgcgttcg
     1021 agatcgcgta gccgatgtgg ccgaacagcg cggcgtcgaa ctggtccacg cgcgcccgtg
     1081 catcctcgag ctgcgcggct ttcatctcct tcagcaccca ggggtggcag aggatcgcgc
     1141 cctggccgaa gatcatcagc gagcgcgtca tgatgttcgc gccttccacc gtgatcatga
     1201 tcggcgtcgc ctgccagctg cgccccgcat agttgcgcgg gccgaggatg atgcccttgc
     1261 cgccgtggat gtccatgacg tcgcgcgaga cctcgcggcc catctcggtg cagtggtact
     1321 tggcgatcgt cgacggcacc gccgggttct cgccgcgcgc caccgcagcg gcggtcgcct
     1381 gggccagcgc gctggtcgcg taggcccggc cggcgatgcg cgcgagcacc tcctcgacgc
     1441 cctcgaagcg gccgatcgag agcccgaact gcttgcggat gcgcgcgtac gcgccggtca
     1501 ccaccgcgcc catcttcgcg ccgccgctgg cggtggaggg cagggtgatc gaacgaccga
     1561 tcgacaggca ctccatcagc atctgccatc cgcggccggc gtagtcctcg ccgccgatca
     1621 gctgcgacag cggcacgaac acgtcgcgcc cgcgcaccgg cccgttctgg aacggggtgt
     1681 tgagcgggaa gtggcggcgg ccgatctcca gccccggcgt gtcgtgcggc acgagcgcga
     1741 gcgagatgcc gatgtcgcgg gtgtcgccca gcaggccgtc cgggtcgtac atgcggaagg
     1801 ccacgccgac cagcgtcgcg accggggcca gggtgatgta gcgcttgttg agcgtcaggc
     1861 ggatgccgag gacgctcgct ccgttccagt cgcccgtgca gacgatgccg taatcgggaa
     1921 tcgaggtcgc gtcggaaccg gcgaacgggc cggtcagcgc gaagcacgga acctcgcgcc
     1981 cgtccgcgag gcgcggcagg tagtggcgct tctgttcctc ggtgccgtag tgcatcagca
     2041 gttcggccgg gccgagcgag ttcggcacgc cgaccgtcga gctcaccgtc gaggagatcg
     2101 tggccagctt ctggatgacc ttgtggttca tcagcgccga gaagccgagg ccgccgtatt
     2161 cggtcgggat gttcagcccg aagaatttgt tgcgcttgat gtagtcccac agctcgggcg
     2221 gcaggtcggc gcggacgtgc gagatgtccc agtcgtcgac catgcggcac agctgctcgc
     2281 aggggccgtc gaggaaagcc tgctcctcgg cggtcagttc cggcttcggc tgcgcgagga
     2341 gctgccgcca gtcgggcttg ccggaaaaca gttcgccctc gaagccgacc gtgccggcct
     2401 cgagcgcggt gcgctcggtg tccgacaggg gcggcagcag cttcgtgtag aaggacagca
     2461 gcggggcggt gatcagcggc ttgcggatcg ccggcaacag cagcggcagt gcgacgagca
     2521 ccagcagcac cgccatcgcc aggacggcgg catggctcgc gccgagcagc cagcaggcga
     2581 cgagggcgca ggcggtgatc gccacccacg tggccagccg caaccggtgg taggcagcga
     2641 aggcgccggc gatcaggacg gcgaggacag gaacgaggac gctcatcgag ccgctccgac
     2701 aaggaagggc ctgccggtgc aggcccgggg tgataccata cgctcaagta tggatagcgt
     2761 tttccggcag tgtcaaccgc tccttcgggc ggtcgtcacc gccagcgcgt actattaccg
     2821 accatggcgt atggaagccc cctgccgatg accaccgacg cgcccgccaa ggccgaacgc
     2881 accggtcgcc tgagcgcgga cgactgggcg caggccgccc tcgacctgat cgccgaacag
     2941 ggcgtggcgg cggtcgcggt cgagcccctg gcgcgtcgcc tcggcgtgac caagggcagc
     3001 ttctactggc acttcccctc gcgcgacgcg ctgctgcagg ccgcgctcga gcgttgggag
     3061 aagacggaac aggagacggt cttcggttcg ctcgaggcgg tgcccgatcc gcgcgagcgc
     3121 ctgcgcgcgc tgttccagct ggtcgcgcac gaggcgacct cgcacatcgt ctacagcgag
     3181 ctgctcaagg cgctcgacca tccgatcgtg cagccggtga tcggccgcgt ttcgcaacgc
     3241 cgcttcgact acctgaccgc cgccttccgc cacgccggcc tgagccgcac cgacgcgcag
     3301 caccgcgcgc gcctggccta cgccgcctac gtcggcttcc tgcagctgag cctgcagctc
     3361 acccagcccc ggctcgcgca cgacgagttc gaggcctacg tcgaacacat gatggcgacg
     3421 ctgatcccgg cctcccccgg cggcgcagcc aacgccggct gagccggcac gcattccctt
     3481 gaacgtgagg tgggttttga acgcagcaat cgtggatgaa acgccgggat ggaccgagga
     3541 ggacgccatg ggcagccgcc tggacgcgct caaccaatgg gtactggaag tcgcacgcct
     3601 gacccggccc gccgccatcc actggtgcga cggcagcgac accgagaatg cgcagctggt
     3661 cgcgcagatg gaggccgatg gcacccttgt ccgcctcaac gaggaaacgc atccgaacag
     3721 ctggctgcac cgctcgcatc cggacgacgt cgcccgcgtc gagcacctga ccttcgtctg
     3781 caccagcgag cgcgaggacg ccggcccgaa caaccactgg atggcgccgg ccgacgcgca
     3841 cgccaagatg gacgcgctgt tcgcgggctg catgcgcggc cgcaccatgt acgtgattcc
     3901 ctattgcatg ggcccgatcg actcgccgct gtcgcgttgc ggcgtggagg tcaccgattc
     3961 gccgtacgtg gtcgccaaca tgcgggtgat gacccggatg ggcgccgcgg cgctggcgcg
     4021 catcgagcgc gagggttcct tcgtcaaggg cctgcactcg atcggcgagc tcgatccgga
     4081 gcgccgcttc atcgtgcatt tcccggaaga gctgaccatc aagtcgttcg gctccggcta
     4141 cggcggcaac gccctgctgg gcaagaagtg ccacgcgctg cgcatcgcct cccaccaggc
     4201 acgctcggaa ggctggctgg ccgaacacat gctcatcctc ggcatcgaga atccgcaggg
     4261 cgacacgcac tacatcgccg ccgcgttccc gtcggcctgc ggcaagacca acctcgccat
     4321 gctgatcccg ccggaggcct accgccagga cggctggaag gtgtggacga tcggcgacga
     4381 catctgctgg atgcgtccgg gtcccgacgg ccggctgtac gcgatcaacc cggaggcggg
     4441 cttcttcggc gtggcgccgg gcacctcgat caattccaac cccaacgcgc tcgagacgat
     4501 cgcgcacgac accatcttca ccaacgtcgc ggtgacggcc gacaaccagc cgtggtggga
     4561 aggcctgaac cagggcaagc ccgccattga ttggcgcgga aatgactacg atttcagcaa
     4621 gggcacgccg gccgcgcacc ccaactcgcg cttcaccgtc agcgcgaagc agtgcccgag
     4681 ctattcgccc aaggccgagg acgcgcaggg cgtgccgatc agcgcgatcg tcttcggcgg
     4741 ccgccgcgcc tcgctggtgc cgctggtgtt cgaggcgcgc gactggaccc acggcgtgct
     4801 ggtcggcgcc gcgatgggct cggaaaccac cgccgccgcc accggcgcgg tcggcgtgat
     4861 gcgccgcgac ccgatggcga tgaagccgtt ctgcggctac aacttcgccg actacttcgc
     4921 ccactggctg tccttcgacc gggacggcgc gcggctgccg aaggtcttcc acgtcaactg
     4981 gttccgcaag ggcgacgacg gcaagttcct gtggccgggc ttcggcgaca acctgcgcgt
     5041 gctcgagtgg atgatcaagc gcgtcgaggg tcgggccggc gcggtcgaga cgccgatcgg
     5101 caacctgccc aggcaggccg agctcaacct cgagggcgtg ccgctgtcgg acgaggcgcg
     5161 cgacaagctg ttcggcttcg atgccgacgg ctggcgcaac gagttcgcca gcatcggcga
     5221 ctacctgcgc gaatacggcc cgcgcatgcc cgacgcgctg catgccgagc agcagcgcat
     5281 cgccggcgcg ctcggcggat gatggcgatc gacacccgtg cgccggcgcc cacccgccgg
     5341 ttcgaggtgg atgggctgca ggtgcgggtg ttcgacggcc tgctgccgga tgccgccgac
     5401 tacgcccgcg cgctggcggc ggccgctttc aagcgcaccg aggtggcccg tcccgatacc
     5461 gcggggtaca agcactgggt cacggagatc gcgctgcagg cgctgcgcca gcagccgatc
     5521 ctgcgcatca ccgaggaggc gatcgccacc ttcgcgtcct cggcctacgc gccgtatcgc
     5581 gcctacacca atgtcgccag ctatggcgac atgctgttca cccacaccga ctgcctgccc
     5641 ggccagcacg agctgaccgc gctgtggttc atctgcgagg actgggacat cgagtggggc
     5701 ggggagacgg tcttcttcga ctcggcgggg gaaatcgcct gcgcgatccg tccccgcccc
     5761 gggcgcctgg tggtcttcga cggcgcgatc ctgcacgcgg gccgcccgcc gcaccgcatc
     5821 tgctaccacc cgcgctacac ccttgcgatc aagttcgagc gtgaccggtc gcgctgatcc
     5881 tccggccgtc gacctggacg acgcgcgatg gtttccgatc gacctggacg tgggccgggg
     5941 cgtcttccac ctgctgcggg tggaccgggc gctcctcgcg gacgccgcgt tcctggacaa
     6001 ccggctgccg gtcgactgga cgcaggcgac cctggtgccc gccgccgcgg ttcccacccc
     6061 gcgcacggcg cccggctggc tgtggcacac gtcgttctgc ggctcgacgc tgctggcgcg
     6121 gatgctcgac gtggacccgc atgcggtcgt cctgcgcgag ccgctggtgc tgaggcggct
     6181 gtccgatgcc cgccatggca acaagccctg gcgtgagttc atcccggcca cgaacagcct
     6241 gctggggcgc gactggaacg gggcgaaggc cgtggtcaaa cccacgcatg ccgcgctcaa
     6301 cgtggcatcc gaggtcatgg cggccgaccc cggcagccgc gcgatcctcc tgagttcctc
     6361 gctggaggac ttcgtggtgt cgcacctgaa gaagcagccg gaaaccctgc agcggatccc
     6421 gctgctcgca gagcgcgcgc tgtcggcgag cggcttccac cagcgcctcg cgccggccgc
     6481 gctgcagccg cccaccctgc tcgcggccgc gaccctgcag tgggcggccc agcgcgaggt
     6541 catggcggac ctgcagcaag cgctccgcga ccgcgtcctc gcggtggact gggcggagct
     6601 gcagcaggat cccgtcgccc aggcgcagcg ctgcgcggcc tggctcgaac tgccggtggc
     6661 gccggccatg ctggaacgcc acgtcctccg cgtcg
//
LOCUS       DATIQC010000425         3483 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_98682, whole genome shotgun sequence.
ACCESSION   DATIQC010000425 DATIQC010000000
VERSION     DATIQC010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3483
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98682"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /gene="lpxD"
                     /locus_tag="VLM17_09155"
     CDS             <1..774
                     /gene="lpxD"
                     /locus_tag="VLM17_09155"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003478452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HSR65750.1"
                     /translation="AFAKIAALFEQRTAFAPGIHPGAAIDPSARVDPGASIGPFVSIG
                     PRSVVEAGAAIASGCAIGEDCVVGAGCELGANVTLVRRVRLGHRVLVHPGAVLGADGF
                     GLAMDAGRWLKVPQLGGVVVGDDCEIGASTTIDRGALDDTVLEEDVRLDNQIQIGHNV
                     HVGAHTAMAGGAAVAGSARIGRYCLIGGCAGVVGHIELCDRVIVTAMSLVTHSIREPG
                     EYSSGTPLMDNRSWRRSAARFKQLDALARRTRTADKDPQ"
     gene            771..1241
                     /gene="fabZ"
                     /locus_tag="VLM17_09160"
     CDS             771..1241
                     /gene="fabZ"
                     /locus_tag="VLM17_09160"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009598725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HSR65751.1"
                     /translation="MSFEPQLPLDVNAIQALLPHRYPFLLVDRVVEFEAHKRVLCFKN
                     VTFNEPFFQGHFPGHPVMPGVLVIEALAQAGGVLTQLSHQMDADGAPVSGRVFYLVKV
                     DDAKFSRMVVPGDRLELDVTLKRTIRNMAQFAGIARVDGQQVACAEILCAEAKD"
     gene            1244..2035
                     /gene="lpxA"
                     /locus_tag="VLM17_09165"
     CDS             1244..2035
                     /gene="lpxA"
                     /locus_tag="VLM17_09165"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HSR65752.1"
                     /translation="MPDAAARIHPSAVVAPAAQLGAGVEIGAFCVIGAEVSIGDGTVV
                     GPHCTIDGPTRIGRGNRIHGHAAIGGDPQDKKFAGERTELVIGDRNVIREFVTISRGT
                     GNGGGITRVGDDNWFLAYVHVAHDCQVGNGCVFSNNATLAGHVEVGDHVILSGFVGVH
                     QFCRIGAHAFVGMGAFVNGDVPPFVLVAQEGYGRPRGINAEGLKRRGFDAGRIAAIKR
                     AYRALYVSGTRLEDARTQLAELAQDSDDVRALLDFLERGDRPLLR"
     gene            2055..3206
                     /gene="lpxB"
                     /locus_tag="VLM17_09170"
     CDS             2055..3206
                     /gene="lpxB"
                     /locus_tag="VLM17_09170"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005993640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HSR65753.1"
                     /translation="MRIALVAGEASGDLLGAGLIEALRRRFPDAQFAGIGGDAMRAAG
                     MDTWFDASELAVMGLAEVLGHLPRLLRVRRALRGRVLAWQPDVFVGIDAPDFNLGVER
                     WLKRRGVRTVHYVSPSVWAWRESRAEKIGASADRVLCLFPMEPPIYAKHGVDARFVGH
                     PLADAMALEPDQAVARAQLGLRADAPVLAVLPGSRLGEIARLGPDFLAAAAIVATEIP
                     GLEVVVPAANAQCRAALERLLAAAPVPFPGVRLIDGKARTAMVASDVVLLASGTATLE
                     AMLAKRPMVVAYQVAPLTYALVKRLGMLKVNRYALPNILAGEDVVPELMQHDCTPLAL
                     AGALLGWFRDPAARDALAPRFRDLHRQLRRDASEAAAAAIADVVSCARG"
     gene            3181..>3483
                     /locus_tag="VLM17_09175"
     CDS             3181..>3483
                     /locus_tag="VLM17_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HSR65754.1"
                     /translation="MSYRARVAEPVAQFAFELPVEPRAQRVAGIDEAGRGPLAGPVVV
                     AAVVFPPGRTPVNGLADSKQLAAERREELFPRIVERALAWHVVSVQVEDIDRLNIFH"
BASE COUNT          462 a         1264 c         1256 g          501 t
ORIGIN      
        1 gcgttcgcga agatcgccgc gctgttcgag cagcggaccg cgttcgcgcc gggcatccat
       61 cccggcgccg cgatcgaccc gtccgcgcgc gtcgaccccg gcgcatcgat cggccccttc
      121 gtcagcatcg gcccgcgcag cgtcgtcgag gcaggcgcgg cgatcgccag cggctgcgcg
      181 atcggcgagg actgcgtggt cggcgccggc tgcgagctcg gcgccaacgt caccctggtg
      241 cggcgcgtgc gcctgggcca ccgcgtgctc gtccacccgg gcgcggtgct cggcgccgac
      301 ggcttcggcc tggcgatgga tgcggggcgc tggctgaagg tgccgcagct cggcggcgtg
      361 gtggtcggcg acgactgcga gatcggcgcg agcaccacga tcgaccgcgg cgcgctcgac
      421 gacaccgtgc tcgaggagga cgtgcgcctc gacaaccaga tccagatcgg ccacaacgtc
      481 cacgtcggcg cgcacaccgc gatggccggc ggcgcggcgg tcgcaggcag cgcgcgcatc
      541 ggccgctact gcctgatcgg cggctgcgcg ggcgtggtcg gccacatcga gttgtgcgac
      601 cgcgtcatcg tcacggcgat gagcctggtc acccattcga tccgcgagcc cggcgagtac
      661 tcttcgggga ccccgctcat ggacaatcgc agctggcgca ggagcgccgc ccgcttcaag
      721 cagctggacg cgctcgcccg caggacgcgg acggccgaca aggacccgca atgagcttcg
      781 aaccgcaact gccgctggac gtcaacgcca tccaggcgct gctgccgcac cgctacccgt
      841 tcctgctggt cgaccgcgtg gtcgagttcg aggcgcacaa gcgggtgctg tgcttcaaga
      901 acgtcacctt caacgagccc ttcttccagg gccacttccc cggccatccg gtgatgcccg
      961 gcgtgctggt gatcgaggcg ctggcgcagg ccggcggcgt gctgacccag ttgtcgcacc
     1021 agatggacgc cgatggcgcg ccggtgtcgg gccgggtgtt ctacctagtc aaggtcgacg
     1081 acgcgaagtt ctcgcgcatg gtggtgccgg gcgaccgcct cgaactcgac gtcacgctca
     1141 agcgcacgat ccgcaacatg gcccagttcg ccggcatcgc ccgcgtggat ggacagcagg
     1201 tcgcgtgcgc cgagatcctg tgcgcagagg cgaaggactg acgatgcccg acgcggccgc
     1261 gcgcatccat ccgtccgcgg tcgtcgctcc ggccgcgcag ctcggcgcgg gcgtggaaat
     1321 cggggcgttc tgcgtgatcg gcgcggaggt cagcatcggc gacggcaccg tcgtcggccc
     1381 gcattgcacc atcgacgggc cgacccgcat cggccgcggc aaccgcatcc acggccacgc
     1441 cgcgatcggc ggcgacccgc aggacaagaa gttcgccggc gagcgcaccg aactcgtgat
     1501 cggcgaccgc aacgtgatcc gggaattcgt caccatcagc cgcggcaccg gcaacggcgg
     1561 cggcatcacc cgcgtcggcg acgacaactg gttcctggcc tacgtgcacg tcgcgcacga
     1621 ctgccaggtc ggcaacggtt gcgtgttctc caacaacgcg acgctcgccg gacacgtcga
     1681 ggtcggcgac cacgtcatcc tcagcggctt cgtcggcgtg caccagttct gccggatcgg
     1741 cgcgcacgcc ttcgtcggca tgggcgcgtt cgtcaacggc gacgtgccac cgttcgtgct
     1801 ggtggcgcag gagggctacg gccggccgcg cgggatcaac gccgaagggc tgaagcggcg
     1861 cggcttcgac gccggccgca tcgccgcgat caagcgcgcc taccgcgcgc tgtacgtctc
     1921 gggcaccagg ctcgaggacg cgcgcaccca gctggcggag ctggcgcagg acagcgacga
     1981 cgtgcgcgcc ctgctcgatt tcctcgagcg cggcgaccgg ccgttgctgc gctgaggtga
     2041 gggcctgccc tagcatgcgg atcgccctgg tcgcgggcga ggcctccggc gacctgctcg
     2101 gcgcgggcct gatcgaggcg cttcggcgcc gcttcccgga cgcgcagttc gccggcatcg
     2161 gcggcgatgc catgcgcgcg gccggcatgg acacgtggtt cgacgcctcc gaactggcgg
     2221 tgatgggcct ggccgaagtg cttggccacc tgccgcggct gctgcgcgtg cgccgcgcgc
     2281 tgcgcgggcg cgtgctggcg tggcagcccg acgtcttcgt cggcatcgac gcgcccgact
     2341 tcaacctcgg ggtggagcgc tggctgaagc ggcgcggcgt gcgcaccgtg cactacgtca
     2401 gcccgtcggt gtgggcctgg cgcgaatcgc gcgcggagaa gatcggcgcg agcgccgacc
     2461 gcgtgctgtg cctgttcccg atggagccgc cgatctacgc gaaacacggc gtcgacgcgc
     2521 gcttcgtcgg ccatccgctc gccgatgcga tggcgctgga gcccgaccag gccgtcgcgc
     2581 gcgcgcagct cggcctgcgc gccgacgcac cggtgctcgc ggtgctgccc ggttcgcgac
     2641 tgggcgagat cgcccgcctc ggccccgact tcctcgccgc ggccgcgatc gtggccactg
     2701 aaatccccgg cctggaggtc gtcgttcccg cggccaacgc gcaatgccgc gccgcgctgg
     2761 agcggctgct ggccgcagca ccggtgccgt tccccggcgt ccgcctgatc gatggcaagg
     2821 cacgcacggc catggtcgcc agcgacgtcg tcctgctcgc ctcgggcacc gcaacgctgg
     2881 aggcgatgct ggccaagcgg ccgatggtgg tcgcctacca ggtcgccccg ctcacctacg
     2941 cgctggtcaa gcggctgggg atgttgaagg tgaaccggta tgccttgccg aacatcctgg
     3001 ccggcgagga tgtcgttccc gagctgatgc agcatgactg cacgcccctg gcgctggcgg
     3061 gcgcgctgct cggctggttc cgcgacccgg ccgcgcgcga cgcgctcgcg ccgcgtttcc
     3121 gtgacctgca ccggcaattg cgccgcgacg catccgaggc cgctgccgcg gcgatcgccg
     3181 atgtcgtatc gtgcgcgcgt ggctgagccc gtcgcccaat tcgccttcga actgccggtg
     3241 gaaccgcgcg cgcagcgcgt cgccgggatc gacgaggccg ggcgcgggcc gctggccggg
     3301 ccggtggtcg tcgccgccgt ggtgttcccg cccggccgca ccccggtgaa tggcctggcc
     3361 gactccaagc agctggccgc ggagcggcgc gaggaactgt tcccgcgcat cgtcgagcgc
     3421 gcgctcgcct ggcacgtggt gtcggtgcag gtggaggaca tcgaccggct gaacatcttc
     3481 cac
//
LOCUS       DATIQC010000426         7553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_628432, whole genome shotgun sequence.
ACCESSION   DATIQC010000426 DATIQC010000000
VERSION     DATIQC010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7553
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_628432"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VLM17_09180"
     CDS             <1..270
                     /locus_tag="VLM17_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012437614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HSR65755.1"
                     /translation="AYEVGADVRDAFVLGDARAAGAFVATRPGHWRVDLYALARQRLA
                     AAGVDRVHGGGACTISDAGRFFSHRRDQRSGRMATLAWRDAPMDA"
     gene            complement(283..1653)
                     /gene="otsA"
                     /locus_tag="VLM17_09185"
     CDS             complement(283..1653)
                     /gene="otsA"
                     /locus_tag="VLM17_09185"
                     /EC_number="2.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate
                     synthase (UDP-forming) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase
                     (UDP-forming)"
                     /protein_id="HSR65756.1"
                     /translation="MSRLVVVSNRVPLPQDAARAGGLAVALRSALEETGGMWFGWSGK
                     RIRGESGERHVERDGNIRYVTVDLSWVDFEAYYNGFANRTLWPLLHFRMDLVDYTRET
                     WAGYLHVNALFADRLADELRGDDIIWVQDYHLIPLAQRLRERGVGNRIGFFLHVPMPS
                     SDLLAALPAHRELFAALASYDLVGFQTVRDLERFQDYVRLFGGGKVVTQGELETADGR
                     RFRAGAFPISIDTRGIARQAEAAVRKPSVQRLRASLTDRALAIGVDRLDYSKGLPERF
                     RAFQRYLERHPEQRGHLTFLQIAPPSRGEVPEYQALRSTLEGLAGHINGLHAAPDWTP
                     VRYINRNFAHDVLTGFYRAADVGLVTPLRDGMNLVAKEFVASQDGKDPGVLVLSRFAG
                     AESELREALQVNPYDTDGVADAIASARTMPLAERRERWRAMMATLERHDIIAWRQSYL
                     GALAAA"
     gene            complement(1726..3507)
                     /locus_tag="VLM17_09190"
     CDS             complement(1726..3507)
                     /locus_tag="VLM17_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HSR65757.1"
                     /translation="MLHPNLDLGLVGNGSLGALVDAQGRVAWCCLPAFDGDPAFCALL
                     QPRLGGGDWSIEVEDFVRSEQHYIANTAILCTRLHDAHGGIVELADFAPRWHQHGRFY
                     RPVMLVRRIRRVAGSPRIRLLLRPLADWGARVPERTWGSNHLRFLLPDMILRLTTDAP
                     LRLVRDELPFLLEHDLHCVLGPDETLTQPVDEFVRHAERQTIAYWRDWVRYLSIPLEW
                     QEAVIRSAITLKLCQYEDTGGIVAALTTSIPEAPHTPRNWDYRYCWLRDAAFVVRALN
                     RLGATRSMEEYIRYIFNLVAGEERELQPVFGIGFETELAEEDVPDLAGYRGMGPVRRG
                     NLAWVQKQHDVYGSVVLASTQLFFDQRLERPGDVTMFQRLEPLGERAFALHDQPDAGL
                     WEFRGRAHVHTYSSVMCWAACDRLAKIAARFGLGERVAYWRERAGIIRERVLREAWNP
                     QRGHFADAFGGERLDASLLLLADLGFLPAEDPRFIATVEAIGRELKRGDALFRYIAPD
                     DFGAPETSFTICTFWYIDALAAIGRLQEARAMFERLLTRRNRLGLLSEDLAFEDGELW
                     GNFPQTYSHVGLIIAAQRLSRPWTDAA"
     gene            complement(3507..4256)
                     /gene="otsB"
                     /locus_tag="VLM17_09195"
     CDS             complement(3507..4256)
                     /gene="otsB"
                     /locus_tag="VLM17_09195"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009580860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HSR65758.1"
                     /translation="MSTHRDPPRPRPPRPADDWALFLDVDGCLLEFADAPDEVSVPPP
                     LPALLERLGERLDGAVALVSGRALSSLDALFAPLRIPAAGLHGLERRSALTEVAAPAR
                     SPALGAVHEEARTLADGFPGALVEDKGAALGLHWRRAPQAAETLRAFAEAALPRLPGY
                     RLQHGDHVVELRPAEGDKGAAIRALMDEPPFRGRVPVFAGDDVTDESGFAVVNARGGV
                     SVLVGTREPSAAHYGLGGPADVLAWLATEDA"
     gene            complement(4405..5100)
                     /locus_tag="VLM17_09200"
     CDS             complement(4405..5100)
                     /locus_tag="VLM17_09200"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR65759.1"
                     /translation="MQLAFTLAWTMAGISLALLVQLATRGERWPLRMAARGWAPGLLG
                     GAGARLRVEGLERVDWSRPCVLVANHQSIIDVCALFRAVPVPLRFVLKQEMAQVPFVG
                     WYARRMGMVFIERGSARSSPQRLRDAVALVRDGATLCAFPEGTRSRDGSVGAFKGGAL
                     QVAIEAGVPVVPVALTGSGAVLPAAGFRVRPGVIGVRFGAPIETAGLAGNDRNALARQ
                     ARDAVIGLLQPTR"
     gene            5308..>7553
                     /gene="clpB"
                     /locus_tag="VLM17_09205"
     CDS             5308..>7553
                     /gene="clpB"
                     /locus_tag="VLM17_09205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005913582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HSR65760.1"
                     /translation="MRMDKLTSRFQQALADAQSLAVGRDHNLIEPAHLMAALLDQQGG
                     GTRPLLAQAGVNVPLLRERLGEILDKLPKVSGQAGNISMGNDLGRLLNVTDKLAQQRG
                     DSFIASELFVLAALEDGGELGRALKSSGATKQKLEAAIDAMRGGEKVQSENAEDQRQA
                     LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIVNHEVPEGLKGKRVLSLDMGALIAGAKFRGEFEERLKAVLNDLAKNEGQIILF
                     IDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQ
                     KVFVGEPSVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNRYISDRQLPDKAID
                     LMDEAASRIRMEIDSKPEEMDRKERRLIQLKIQREALKKEKDPESKKRLEDLEAQIAT
                     LEREFNDLEEVWKAEKATLQGATKIKEQIEQARLDLEAAQRRQDYARMSEIQYGQIPE
                     LEKQLAVAQEAEKKGFTLLQDKVTAEEIAQVVSRWTGIPVSKMLEGEREKLLKMEQHL
                     HTRVVGQDEAIKVVSDAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELTKALAEFLFD
                     SSDAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNVGSDLIQEASRRGESDERLKD
                     KLMDVLRHT"
BASE COUNT         1162 a         2641 c         2764 g          986 t
ORIGIN      
        1 gcctacgagg tcggcgcgga cgtgcgcgac gccttcgtcc tgggcgacgc gcgcgccgcc
       61 ggcgccttcg tcgccacgcg ccccggccac tggcgcgtcg acctgtacgc gctggcccgg
      121 cagcggctgg cggcggcggg cgtcgaccgc gtccacggcg gtggcgcctg cacgatctcc
      181 gacgcgggtc gcttcttctc gcaccgtcgc gaccagcgca gcgggcgcat ggcgacgctg
      241 gcgtggcgcg atgcgccgat ggatgcgtga cggtgcgggc ggctaggccg cggccagcgc
      301 cccgaggtag ctctgccgcc acgcgatgat gtcgtgccgt tcgagcgtgg ccatcatcgc
      361 ccgccatcgt tcccgccgct cggccagcgg catggtgcgc gcgctggcga tggcgtcggc
      421 gacgccgtcg gtgtcgtagg gattcacctg cagggcctcg cgcagttcgc tctccgcgcc
      481 ggcgaaccgc gacagcacca gcacgccggg gtccttgccg tcctgcgagg cgacgaattc
      541 cttggccacc aggttcatgc cgtcgcgcag cggcgtcacc aggccgacgt ccgcggcgcg
      601 gtagaagccg gtgagcacgt cgtgggcgaa gttgcggttg atgtagcgca ccggcgtcca
      661 gtccggcgcg gcatgcaggc cgttgatgtg cccggccagc ccttccaggg tgctgcgcag
      721 ggcctggtat tcgggcacct cgccgcgcga gggcggggcg atctgcagga aggtgaggtg
      781 gccgcgctgt tcgggatggc gctcgaggta gcgctggaag gcgcggaacc gctcgggcag
      841 gcccttggag tagtcgagcc ggtcgacgcc gatcgcgagc gcgcggtcgg tcagcgaggc
      901 gcgcaggcgc tgcaccgacg gcttgcgcac cgccgcctcc gcctgccgcg cgatgccgcg
      961 ggtgtcgatg ctgatcggga aggcgcccgc gcggaagcgg cggccgtcgg cggtctccag
     1021 ctcgccctgc gtgacgacct tgccgccacc gaacaggcgc acgtagtcct ggaagcgctc
     1081 gaggtcgcgc acggtctgga agccgaccag gtcgtaggag gccagcgcgg cgaacagctc
     1141 gcggtgcgcg ggcagggcgg cgagcaggtc ggaggagggc atcggcacgt gcaggaagaa
     1201 gccgatccgg ttgccgacgc cgcgttcgcg caggcgctgt gcgagcggga tcaggtggta
     1261 gtcctgcacc cagatgatgt cgtccccgcg cagctcgtcg gcgaggcggt cggcgaacag
     1321 cgcgttgacg tgcaggtatc cggcccaggt ctcgcgggtg tagtcgacca ggtccatgcg
     1381 gaagtgcagc agcggccaca gcgtgcggtt ggcgaagccg ttgtagtagg cctcgaagtc
     1441 cacccacgac aggtcgacgg tgacgtagcg gatgttgccg tcgcgctcga cgtggcgctc
     1501 gccggattcg ccgcggatgc gcttgccgct ccagccgaac cacatgccgc cggtttcctc
     1561 cagcgccgag cgcagcgcca cggccaggcc gccggcgcgc gcggcgtcct gcggaagggg
     1621 cacgcggttg gagacgacga ccaggcggct catgcggcgc tccgtggcgt gcggcggctc
     1681 atccgtagtc ctcgtcgctt cctcttcgcc atgtggccgg gcgtgtcagg ccgcgtccgt
     1741 ccacggccgg ctcagccgct gcgcggcgat gatcaggccg acgtgcgaat aggtctgcgg
     1801 gaaattcccc cacagctcgc catcctcgaa ggcgaggtcc tcggacagca ggccgagccg
     1861 gttgcgccgg gtcagcagcc gctcgaacat cgcgcgcgcc tcctgcaggc ggccgatcgc
     1921 cgcgagcgcg tcgatgtacc agaaggtgca gatggtgaag ctggtctccg gggcgccgaa
     1981 atcgtccggc gcgatgtagc ggaacagcgc gtcgccgcgc ttgagctcgc ggccgatggc
     2041 ctcgacggtg gcgatgaagc gcgggtcttc cgccggcagg aagccgaggt cggcgagcag
     2101 cagcaggctg gcgtccaggc gttcgccgcc gaaggcgtcg gcgaaatgcc cgcgctgcgg
     2161 gttccacgcc tcgcgcagca cgcgctcgcg gatgatgccg gcgcgctcgc gccagtacgc
     2221 cacgcgctcg cccaggccga agcgcgcggc gatcttggcc aggcggtcgc aggccgccca
     2281 gcacatcacg ctcgaatagg tatgcacgtg cgcgcggccg cggaattccc acaggccggc
     2341 gtcgggctgg tcgtgcaggg cgaacgcgcg ctcgccgagc ggttccaggc gctggaacat
     2401 ggtgacgtcg cccggccgtt cgaggcgctg gtcgaagaac agctgggtcg aggccagcac
     2461 cacgctgccg tagacgtcat gctgcttctg cacccaggcg aggttgccgc gccggaccgg
     2521 gcccatgccg cggtagccgg ccaggtccgg cacgtcctcc tccgccagtt cggtctcgaa
     2581 gccgatgccg aacaccggct gcagctcgcg ttcctcgccg gcgacgaggt tgaagatgta
     2641 gcggatgtat tcctccatgc tgcgggtcgc gccgaggcgg ttgagcgcgc gcaccacgaa
     2701 ggccgcgtcg cgcagccagc agtagcggta gtcccagttg cgcggcgtgt gcggcgcttc
     2761 cggaatggac gtggtgagcg cggccacgat cccgccggtg tcctcgtact ggcagagctt
     2821 gagcgtgatc gcgctgcgga tcaccgcttc ctgccattcg agcgggatgg agaggtagcg
     2881 cacccagtcg cgccagtagg cgatcgtctg ccgttcggcg tggcgcacga actcgtcgac
     2941 cggttgggtc agcgtctcgt ccgggccgag cacgcagtgc aggtcgtgct cgagcaggaa
     3001 cggcagctcg tcgcgcacca gccgcagcgg ggcgtcggtg gtcagccgca ggatcatgtc
     3061 cggcagcagg aagcgcaggt ggttgctgcc ccaggtgcgc tcgggaacgc gcgcgcccca
     3121 gtcggcgagc ggtcgcagga gcaggcggat gcgcggactg ccggcgacgc ggcggatccg
     3181 ccggaccagc atcaccggcc ggtagaagcg tccgtgctgg tgccagcgcg gggcgaaatc
     3241 ggcgagttcg acgatgccgc cgtgcgcatc gtgcaggcgc gtgcacagga tcgcggtgtt
     3301 ggcgatgtag tgttgttcgg agcggacgaa gtcctcgacc tcgatcgacc agtcgccgcc
     3361 gcccagcctg ggctgcagca gcgcgcagaa cgcgggatcg ccgtcgaacg ccggcaggca
     3421 gcaccacgcc acccggccct gtgcgtcgac cagggcgccg aggctgccgt tgccgaccag
     3481 gccgaggtcg aggttgggat gcagcatcag gcgtcctccg tcgccagcca ggccagcacg
     3541 tcggcgggac cgcccaggcc gtagtgcgcg gcgctcggct cgcgcgtgcc gaccagcacg
     3601 ctcacgcccc cgcgcgcgtt gaccaccgcg aagccgcttt cgtcggtgac gtcgtcgccg
     3661 gcgaacaccg gcacccggcc gcggaacggc ggctcgtcca tcagcgcgcg gatcgccgcg
     3721 cccttgtcgc cttcggccgg gcgcagttcg accacatggt cgccgtgctg caggcggtag
     3781 cccgggaggc gcggcagcgc ggcctcggcg aacgcgcgca gcgtttccgc ggcctgcggc
     3841 gcgcgccgcc agtgcaggcc gagcgcggcc cccttgtcct cgaccagcgc gccgggaaaa
     3901 ccgtcggcga gcgtgcgcgc ttcctcgtgc acggcgccga gcgcgggcga gcgcgccggc
     3961 gccgcgactt ccgtgagcgc gctgcgtcgt tcgagcccgt gcaggcccgc ggcggggatg
     4021 cgcaatggcg cgaacagcgc gtcgaggctg ctcagggcgc gcccgctgac cagcgccacc
     4081 gcgccgtcga ggcgctcgcc caggcgctcc agcagcgccg gcaggggcgg cggcacggac
     4141 acctcgtccg gcgcgtcggc gaattcgagc aggcatccgt cgacatcgag gaacaacgcc
     4201 cagtcgtcgg ccggtcgcgg cggtcgcggc cggggcgggt cgcggtgcgt ggacatgccg
     4261 cgcattctgg cgaaggcggc gttagcgccg ggttcacgcg cgtgtccgcg acgcggggcg
     4321 ggcggatcgc cttcgccgaa cgagccgccg atcgcaccgc gcgtgaaaaa cccgccggcg
     4381 ccttttccgc ggtcgtcgaa tccgtcagcg cgtcggctgc agcagcccga tcaccgcgtc
     4441 gcgcgcctgc cgcgccagtg cattgcgatc gttgccggcc aggcccgcgg tctcgatcgg
     4501 cgcgccgaag cgcacgccga tcacgccagg ccgcacccgg aagcccgccg ccggcagcac
     4561 ggctccgctg cccgtgagcg ccaccggcac caccggtacc ccggcctcga tcgccacctg
     4621 caacgcgccg cccttgaacg cgccgacgct gccgtcgcga ctgcgcgtgc cttcgggaaa
     4681 ggcgcacagg gtggctccgt cgcgcaccag cgcgaccgcg tcgcgcaggc gctgcggcga
     4741 actgcgcgcg ctgccgcgtt cgatgaagac catgcccatg cggcgcgcgt accagccgac
     4801 gaagggcacc tgcgccatct cctgcttgag cacgaagcgc agcggcaccg gcacggcgcg
     4861 gaacagcgcg cagacatcga tgatcgactg gtggttggcg accagcacgc agggccgcga
     4921 ccagtcgacg cgctcgaggc cctccacccg caggcgcgcg cccgcgccgc cgagcagccc
     4981 cggcgcccag ccgcgcgcgg ccatccgcag cggccagcgc tcgccccgcg tcgcgagctg
     5041 gaccagcagg gcgagggaga tccccgccat ggtccacgcc agggtgaagg ccagttgcac
     5101 gctgttccag gcaatccacg cggccgcctt cgcgcggcca tcccggcggc tccgcgccgg
     5161 caatccgatc acacccactg cccgacatcc cccgcacagg tcgcgcggga ggatacgccg
     5221 gggcccgcgc ccgggccagc ggtgccttgt gcggccgccg gcctgcccgc atctatggcg
     5281 gtgttcccgg ttccggagat cgcgcccatg cgcatggaca agctcacctc gcgcttccag
     5341 caggcgctgg ccgacgcgca gtcgctcgcg gtcggccgcg accacaacct gatcgaaccg
     5401 gcgcacctga tggccgcgct gctcgaccag cagggcggcg gcacgcgtcc gctgctggcg
     5461 caggccggcg tcaacgtgcc gctgctgcgc gagcgcctgg gcgagatcct cgacaagctg
     5521 ccgaaggtgt ccggccaggc cggcaacatc agcatgggca acgacctcgg ccgcctgctc
     5581 aacgtcaccg acaagctcgc gcagcagcgc ggcgacagct tcatcgccag cgaactgttc
     5641 gtgctggccg cgctcgagga cggtggcgaa ctcgggcgcg cactgaaatc gtccggtgcg
     5701 accaagcaga agctcgaggc cgcgatcgac gcgatgcgcg gcggcgagaa ggtgcagtcc
     5761 gagaatgccg aagaccagcg ccaggcgctg gagaagtaca ccatcgacct caccgcgcgc
     5821 gccgaatcgg gcaagctcga cccggtgatc ggccgcgacg aggagatccg ccgcaccatc
     5881 caggtgctgc agcggcgcac caagaacaac ccggtgctga tcggcgaacc gggcgtgggc
     5941 aagaccgcga tcgtcgaggg cctggcgcag cgcatcgtca accacgaggt gcccgagggc
     6001 ctcaagggca agcgcgtgct gtcgctggac atgggcgcgc tgatcgccgg ggcgaagttc
     6061 cgcggcgagt tcgaggagcg gctgaaggcc gtgctcaacg acctggccaa gaacgaaggc
     6121 cagatcatcc tgttcatcga cgagctgcac acgatggtcg gcgcgggcaa ggccgagggc
     6181 gcgatggacg ccggcaacat gctcaagccc gcgctcgccc gcggcgagct gcactgcatc
     6241 ggcgcgacca cgctcgacga ataccgcaag tacatcgaga aggacgccgc gctggagcgg
     6301 cgcttccaga aggtgttcgt cggcgagccg agcgtggagg acaccatcgc gatcctgcgc
     6361 gggctgaagg aacgctacgc ggtgcaccac ggcgtggaga tcaccgaccc ggcgatcgtc
     6421 gccgcggcca cgctgtccaa ccgctacatc tccgaccgcc agctgcccga caaggcgatc
     6481 gacctgatgg acgaggccgc ctcgcgcatc cgcatggaga tcgactccaa gccggaggag
     6541 atggaccgca aggagcgccg gctgatccag ctcaagatcc agcgcgaggc gctgaagaag
     6601 gagaaggacc cggagtcgaa gaagcggctc gaggacctgg aggcgcagat cgccaccctg
     6661 gagcgggagt tcaacgacct cgaggaggtg tggaaggcgg agaaggccac cctgcagggg
     6721 gcgacgaaga tcaaggagca gatcgagcag gcacgcctgg acctcgaggc cgcgcagcgc
     6781 cgccaggact acgcgcgcat gagcgagatc cagtacgggc agatccccga gctggagaag
     6841 cagctcgcgg tcgcgcagga ggccgagaag aagggcttca ccctgctgca ggacaaggtc
     6901 accgccgagg agatcgcgca ggtggtctcg cgctggaccg gcatcccggt gtcgaagatg
     6961 ctcgagggcg agcgcgagaa gctgctcaag atggagcagc acctgcacac ccgcgtggtc
     7021 ggccaggacg aggcgatcaa ggtcgtgtcc gacgcggtgc ggcgttcgcg tgccggactg
     7081 tccgatccga accgtccgtc cgggtcgttc ctgttcctcg gccccaccgg cgtgggcaag
     7141 accgagctga ccaaggcgct ggcggagttc ctgttcgaca gcagcgacgc gatggtgcgc
     7201 atcgacatgt cggagttcat ggagaagcac tcggtggcgc ggctgatcgg cgcgccgccc
     7261 ggctacgtcg gctacgagga aggcggttac ctgaccgagg ccgtgcgccg ccggccgtac
     7321 agcgtgatcc tgctcgacga ggtcgagaag gcgcatccgg acgtgttcaa catcctgctc
     7381 caggtgctcg acgacggccg cctgaccgat ggacagggcc gcacggtcga cttccgcaac
     7441 acggtcatca tcatgacgtc gaacgtcggg tccgacctca ttcaggaggc ttcgcgccgc
     7501 ggcgagagcg acgagcggct caaggacaag ctaatggacg tcctgcgcca cac
//
LOCUS       DATIQC010000427         1566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_275588, whole genome shotgun sequence.
ACCESSION   DATIQC010000427 DATIQC010000000
VERSION     DATIQC010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275588"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1566)
                     /locus_tag="VLM17_09210"
     CDS             complement(<1..>1566)
                     /locus_tag="VLM17_09210"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010364931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HSR65761.1"
                     /translation="DAPPPAGLPARLFAFATLNVSPDVLRVIATQARVGTLHFYLPTP
                     TRSYWGDLQTLAGRLRTGEDPFACDDENPLLQAWGAAGRDFMALLGSYEVVHPRGEIA
                     AYAEPAPVQGDPLADGLLKRLQRDLFHRRATPAATLRAQVDRRDPTLQVHACHTRLRE
                     VQVLHDQLRGLLEDARFDPPLQPREIAVLAPDIDPYAPCIEAVFGGRAGQPDFIPHAL
                     ADASPLAGEPLAEVFLKLLALPVSRFGLHEILDLLASPPLAEANGLDAAALERLATWL
                     QAAGARWGLDARHRATHGAPADDAFTWRFALDRLLLGHACGDAGDLALPAGGLLAPWP
                     ELEGSALDALDVLLRLLRVLERHERALAETLSPAQWRERLLGLLDAVLPRPPGDAAGQ
                     RALERLRQLVGDFAAQAARAGVALPVPPEVVRAHFAAALAEADTRAPLLTGGVSFGRM
                     VPMRLLPFRVICVLGMNDGDYPRRDPVAGLNRLAAELGSARRRHGDRSLREDDRFLFL
                     QLLASAGDVFYLS"
BASE COUNT          220 a          554 c          628 g          164 t
ORIGIN      
        1 agctgaggta gaacacgtcg cccgcggacg cgagcaactg caggaacagg aagcggtcat
       61 cctcccgcag cgaacggtcg ccgtggcggc ggcgcgcgct gccgagttcg gcggcgagcc
      121 ggttgaggcc ggcgaccgga tcgcggcgcg ggtagtcgcc gtcgttcatg ccgagcacgc
      181 agatcacgcg gaagggcagc agccgcatcg gcaccatgcg gccgaagctg accccgccgg
      241 tgagcagcgg cgcgcgggtg tcggcctcgg cgagcgcggc ggcgaaatgc gcgcgcacca
      301 cctccggcgg caccggcagc gcgacgccgg cgcgcgcggc ctgcgcggcg aaatcgccga
      361 ccagctggcg caggcgctcc agtgcgcgct ggccggccgc gtcgcccggg gggcgcggca
      421 gcaccgcgtc gagcagcccg agcaggcgct cgcgccattg cgccggcgac agcgtctcgg
      481 cgagcgcgcg ttcgtggcgc tcgagcacgc gcagcaggcg caagagcacg tcgagcgcgt
      541 cgagcgcgct gccttccagc tccggccagg gcgcgagcaa cccgcccgct ggcaacgcga
      601 ggtcgccggc gtcgccgcag gcgtggccga gcagcaggcg gtccagtgcg aagcgccagg
      661 tgaacgcatc gtcggccggc gcgccatgcg tggcgcgatg gcgcgcatcc aggccccagc
      721 gcgccccggc cgcctgcaac caggtcgcca ggcgctcgag cgccgccgcg tcgaggccgt
      781 tggcctcggc cagcggcggg ctggcgagga ggtcgaggat ctcgtgcagg ccgaagcgcg
      841 agaccggcag cgccagcagc ttgaggaaga cctcggccag cggctcgccg gccagcggac
      901 tggcgtcggc gagcgcgtgg ggaatgaagt cgggctgccc cgcgcgaccg ccgaacaccg
      961 cttcgatgca gggcgcatag ggatcgatgt cgggcgcgag cacggcgatc tcgcgcggct
     1021 gcagcggcgg atcgaagcgc gcatcctcga gcagcccgcg cagctggtca tgcagcacct
     1081 gcacttcgcg caggcgggtg tggcaggcgt gcacctgcag ggtcgggtcg cggcggtcga
     1141 cctgcgcgcg caacgtggcg gcgggcgtgg cgcggcggtg gaacaggtcg cgctgcaggc
     1201 gcttgagcag gccgtcggcc agcggatcgc cttgcacggg cgccggctcg gcataggcgg
     1261 cgatctcgcc gcgcggatgc accacctcgt agctgccgag cagggccatg aagtcgcgcc
     1321 cggccgcgcc ccaggcctgc agcagcgggt tctcgtcgtc gcaggcgaac ggatcctcgc
     1381 ccgtgcgcag gcgcccggcc agcgtctgca ggtcgcccca gtaggagcgg gtcggcgtcg
     1441 gcaggtagaa gtgcagggtg cccacccgcg cctgggtcgc gatcacccgc agcacgtccg
     1501 gcgagacgtt gagggtggcg aaggcgaaca ggcgcgcggg caggccggcc ggcggcggcg
     1561 cgtcgt
//
LOCUS       DATIQC010000428         3161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_593404, whole genome shotgun sequence.
ACCESSION   DATIQC010000428 DATIQC010000000
VERSION     DATIQC010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3161
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_593404"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..941
                     /gene="groEL"
                     /locus_tag="VLM17_09215"
     CDS             <1..941
                     /gene="groEL"
                     /locus_tag="VLM17_09215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005411226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HSR65762.1"
                     /translation="LPVLEGVAKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVCAVK
                     APGFGDRRKAMLEDMAILTGGTVISEEVGLSLEKATIKDLGRAKKIVVSKENTTIIDG
                     AGETSGIEGRIKQIKAQIEETSSDYDREKLQERVAKLAGGVAVIKVGASTESEMKEKK
                     ARVEDALHATRAAVEEGVVPGGGVALIRALAAISGLKGINEDQNHGVAIALRAMEAPL
                     REIVTNAGEEPSVIVNRVKEGQGNFGYNAATGEFGDMVAMGILDPTKVTRTALQNAAS
                     IAGLMITTEAMVAELPKKEEPAMPGGGMGGMGGMDF"
     gene            complement(1014..2084)
                     /locus_tag="VLM17_09220"
     CDS             complement(1014..2084)
                     /locus_tag="VLM17_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018973973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03118 family protein"
                     /protein_id="HSR65763.1"
                     /translation="MAFLPLRRWAPLAFALLLASSPAVAASHYHRSNLVSDGGVPAAH
                     VDPNLVNGWGVAFNPYGFAWVAAADGMVSTLYDGSGNIQPLVVQIPSPTMSMGGNPTG
                     IVFNGSNNFVVSRNGLSGPARFIFATEQGVIAAWSPTVDATHALRVVNRSSTGTSYKG
                     LAISGNGATQLLFAADFHHARVDVFDQNFHAVALPGAFTDPRLPAGFAPFGIQAIGGD
                     IYVTYAKQDAAKEDEVAGPGLGVVDVYTPNGSFIRRIAAGGTLNAPWGIALAPAGFGD
                     LSNKLLIGNFGDGRIHAYSPTAGIPLGPLTDSQGKPIRIDGLWGMQFGNGVSGQPVNT
                     LFFAAGPDDESHGQYGRIDLIH"
     gene            2243..2830
                     /locus_tag="VLM17_09225"
     CDS             2243..2830
                     /locus_tag="VLM17_09225"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR65764.1"
                     /translation="MLQTAGRDPLERPARGAAAEDVRLMARVALEDVRAFEAVYRCYA
                     PRLARFLRGMLRQPALVDEVLDDTMLVAWRKAHTWDAASQLSTWLFAIAYRQALKAAR
                     RDSPAQEFTDEPVAPASAEPDNALEQQQLHGRLAIALDALTPEHRAVVELTYYQGYNC
                     REIAEIVGCPVATVKTRMFYARQRLRGLLAGEVLP"
     gene            2827..>3161
                     /locus_tag="VLM17_09230"
     CDS             2827..>3161
                     /locus_tag="VLM17_09230"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HSR65765.1"
                     /translation="MNGRILPFEPRGHDEALRLLPWLVNGSLEAEERAWLDAHVVGCP
                     QCRDERALLEDLQATCLQDAETDAGVDAGWRRVRACVQPRAPAASRWQGWRRQWARAP
                     RWVGWTLAT"
BASE COUNT          498 a         1016 c         1221 g          426 t
ORIGIN      
        1 tgctgcccgt cctcgagggc gtggccaagg ccggcaagcc gctgctgatc gtcgccgagg
       61 aagtcgaggg cgaggcgctg gccacgctcg tcgtcaacac catccgcggc atcgtcaagg
      121 tgtgcgcggt caaggcgccg ggcttcggcg accgccgcaa ggcgatgctc gaggacatgg
      181 cgatcctcac cggcggcacc gtgatctccg aggaagtcgg cctctcgctc gagaaggcga
      241 cgatcaagga cctcggccgg gcgaagaaga tcgtggtctc gaaggagaac accacgatca
      301 tcgacggcgc cggcgaaacc tccggcatcg aaggccgcat caagcagatc aaggcgcaga
      361 tcgaggagac ctcctccgac tacgaccgcg agaagctgca ggagcgcgtg gccaagctgg
      421 ccggcggcgt cgcggtgatc aaggtcggtg cgtcgaccga gagcgagatg aaggagaaga
      481 aggcgcgcgt cgaggacgcc ctgcacgcca cgcgtgcggc ggtggaggag ggcgtggtgc
      541 cgggcggcgg cgtcgccctg atccgcgcgc tggccgcgat ctcgggcctc aagggcatca
      601 acgaggacca gaaccacggc gtcgcgatcg ccctgcgcgc gatggaagcg ccgctgcgcg
      661 agatcgtcac caacgccggc gaggagccgt cggtcatcgt caaccgcgtc aaggaaggcc
      721 agggcaactt cggctacaac gcggccaccg gcgagttcgg cgacatggtc gcgatgggca
      781 tcctggaccc gaccaaggtc acgcgcaccg cgctgcagaa cgcggcgtcg atcgccggcc
      841 tgatgatcac caccgaggcg atggtcgccg agctgccgaa gaaggaagag ccggcgatgc
      901 cgggcggcgg catgggtggc atgggcggca tggatttctg atccgcgcca cgcgttgccg
      961 cgacacggaa agccccgcag cgatgcgggg ctttttttgt ggtgcgcgac ggatcagtgg
     1021 atcaggtcga tgcgtccgta ctggccgtgc gattcgtcgt ccggcccggc ggcgaagaac
     1081 agcgtgttga ccggctggcc ggagacgccg ttgccgaact gcatgcccca caggccgtcg
     1141 atgcggatcg gcttgccctg gctgtcggtc agcggcccga gcgggatgcc ggcggtgggc
     1201 gagtaggcgt ggatgcggcc atcgccgaaa ttgccgatca gcagcttgtt gctgaggtcg
     1261 ccgaatcccg ccggcgcgag cgcgatgccc cacggcgcgt tgagcgtgcc gcccgcggcg
     1321 atgcggcgga tgaaggagcc gttgggcgtg tacacgtcga ccacgccgag gcccggcccg
     1381 gcgacctcgt cctccttggc cgcgtcctgc ttggcgtagg tgacgtagat gtcgccgccg
     1441 atcgcctgga tgccgaacgg cgcgaagccg gcgggcaggc gtgggtcggt gaacgcgccg
     1501 ggcaatgcga cggcgtggaa attctggtcg aacacgtcga cgcgggcgtg gtggaagtcg
     1561 gcggcgaaga gcagctgggt cgcgccgttg ccgctgatcg ccaggccctt gtagctggtg
     1621 ccggtggagg agcggttgac cacgcgcagc gcatgggtcg cgtcgacggt cggcgaccat
     1681 gccgcgatca cgccctgctc ggtggcgaag atgaagcgcg cggggccgga caggccattc
     1741 cggctgacca cgaagttgtt cgagccgttg aacacgatgc cggtcggatt gccgcccatc
     1801 gacatggtcg gcgacgggat ctgcacgacc agcggctgga tgttgccgct gccgtcgtag
     1861 agcgtggaca ccatgccgtc ggcggcggcg acccaggcga agccatacgg gttgaaggcc
     1921 acgccccagc cgttgaccag gttggggtcg acgtgggcgg cgggcacgcc gccgtcggag
     1981 acgaggttgc tgcggtggta atggctggcg gccacggccg gcgacgatgc cagcaacagg
     2041 gcgaacgcca gtggcgccca gcggcgcagg ggaaggaaag ccatggggga acctccgtgc
     2101 gggagacagg cacggccggc gcgttgacgg cgtccgccat gcgcgggtcc atactcggcg
     2161 cgcggcgggc ggttcacggc cgcctgccgt gaaccggccg gacccgcgcg ggtatccaat
     2221 gccggggcac gaggacagat cgatgctgca gacggcaggc agggatccgc tcgagcggcc
     2281 ggcgcgcggc gccgccgccg aggacgtgcg gctgatggcg cgcgtcgcgc tggaggacgt
     2341 gcgcgcgttc gaggccgtgt accgctgcta cgcgccgcgg ctcgcgcgtt tcctgcgcgg
     2401 gatgctgcgc cagccggcgc tggtcgacga agtgctggac gacaccatgc tggtcgcctg
     2461 gcgcaaggcg cacacctggg acgcggcgtc gcagctgtcg acctggctgt tcgcgatcgc
     2521 ctaccggcag gcgctcaagg cggcgcggcg cgacagtccg gcgcaggaat tcaccgacga
     2581 gccggtcgcg cccgcttcgg ccgaacccga caacgcgctc gagcagcagc aactgcacgg
     2641 gcgactggcc atcgcgctgg atgcgctcac gcccgagcat cgcgcggtgg tcgagctcac
     2701 ctattaccag ggctacaact gccgcgagat cgccgagatc gtcggctgcc cggtggcgac
     2761 ggtgaagacg cggatgttct acgcgcggca aaggctgcgc ggcctgctgg cgggggaggt
     2821 gctgccatga acggtcggat cctgccgttc gagccgcgcg ggcacgacga ggcgctgcgc
     2881 ctgctgccgt ggctggtcaa cggcagcctc gaggcggagg agcgtgcctg gctcgacgcc
     2941 cacgtggttg gttgcccgca atgccgcgac gagcgcgcat tgctggagga cctgcaggcg
     3001 acgtgcctgc aggacgcgga aacggatgcg ggcgtcgatg caggctggcg gcgcgtgcgc
     3061 gcctgcgtgc agccgcgcgc gcccgcggcc tcgcgctggc aggggtggcg gcgccagtgg
     3121 gcgcgcgcgc cgcgctgggt cggctggacg ctggcgacgc a
//
LOCUS       DATIQC010000429         5199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_451785, whole genome shotgun sequence.
ACCESSION   DATIQC010000429 DATIQC010000000
VERSION     DATIQC010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5199
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451785"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2748
                     /gene="aceE"
                     /locus_tag="VLM17_09235"
     CDS             <1..2748
                     /gene="aceE"
                     /locus_tag="VLM17_09235"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004738 - pyruvate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HSR65766.1"
                     /translation="TREWLDSIQAVLDHDGPGRAHQLLENVVELTRRAGANLPFEPTT
                     EYINTIPAGQEAKSPGDAAMEWRIRSIIRWNAMAMVVRANRKPGELGGHIASFASSAT
                     LYDVGFNHFWRAPSAEHPGDLLYIQGHSSPGIYSRSFLEGRISESQLDHFRMEVDGRG
                     ISSYPHPWLMPEYWQTPTVSMGLGPISAIYQARSWKYLEGRGLMPKTDRKVWCFLGDG
                     ETDEPESLGAISVAGREGLDNLVFVVNCNLQRLDGPVRGNGKIIQELEGQFRGAGWNV
                     IKLVWGSYWDPLLARDTTGKLRQLMMETVDGEYQNCKAFGGKYTRDHFFGKYPETAQL
                     VASLSDEDIWRLNRGGHDPHKVYAAYDAAVKQTGMPTVILAKTVKGYGMGGAGEALNP
                     THGTKKMDDSDIRIFRDRFNIPVTDKQLEADVIPFFHPGEKSPEVEYMHERRKALGGY
                     LPQRRRKASTSLEAPKLEVFERLLKATGEREISTTMAFVQALNIVLRDKQVGPRCVPI
                     VADEARTFGMEGMFRQLGIYAPQGQKYKPVDRDQLMYYREDAAGQVLEEGITECGAFS
                     SWMACATSYSTNDLQLLPFYIYYSMFGFQRIGDSAWQAADMRARGFMLGATAGRTTLN
                     GEGLQHEDGHSMVQASLIPNCRSYDPTFSYEVAVILQHGMQRMLAEQRDEYFYITLMN
                     ENYAHPEMPAGAQDGIIKGMYLLSSTSPNGGNTAPASGADSTAPASGRGRSGAAASGE
                     GNATSKKKSNTPHVQLLGSGTILREAIAAAELLDKEFGVTADIWSCPSFNELAREGSE
                     AERWNRLHPEEAPRKPYITQLLEGRPGPAIAATDYIRAYPEQVRAFVPMRYTVLGTDG
                     FGRSDTRENLRRHFEVDRFHIAHAAIAALAQDGKMTGKDVARAIKLFRIDSDKPNPLG
                     A"
     gene            3680..>5199
                     /locus_tag="VLM17_09240"
     CDS             3680..>5199
                     /locus_tag="VLM17_09240"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HSR65767.1"
                     /translation="MADVFVSYARGDKARVAPLVAAVEAQGWSVWWDPEIVPGQEFDD
                     QIDVEIDQAKAVLVVWTPVSVASRWVRGEAREAAERGILVPVRFEQARLPMDVRAIHT
                     TDMDGWDGDPAAPQAQEFLRALATTIARTQAALSAKAAAASATTPAATETARFTICVL
                     PFANMSGDPEQEYFSDGITEDIITDLSKISALAVISRNSAFMYKDKHVDIPKVARELK
                     VTHVLEGSVRKAGGRVRISAQLVDGATNSHLWAERYDRDASDIFALQDEISAAIVTAL
                     QLRLLPEEKKAIERRGTDNAEAHNLYLMARQTYITGQEADVRSAEAIIRLCARATEFD
                     PNYAQAWALMAVGYFKLHQVKGGRSDEGLAAADRALALEPKLAEAHAIKAQILLQDGD
                     PDAAAKEVAIALELDPDSYETNRSAARLSYQLHRHEDAIRYYTNAVNLMDADVNSAMM
                     LISCYTAVGDMANRRRAAEMALKRTETILAADQYNSGVTAYSAYALAALGEGERAKA"
BASE COUNT          917 a         1873 c         1721 g          688 t
ORIGIN      
        1 acccgcgagt ggctcgattc gatccaggcc gtcctcgacc acgacggccc cggccgcgcc
       61 caccagctgc tggagaacgt ggtcgagctc acccgccgcg ccggcgccaa cctgccgttc
      121 gagccgacca ccgaatacat caacaccatc cccgccggcc aggaagccaa gtcccccggc
      181 gacgcggcga tggaatggcg gatccgctcg atcatccgct ggaacgcgat ggcgatggtg
      241 gtgcgcgcca accgcaagcc gggcgaactc ggcggccaca tcgccagctt cgcgtcctcg
      301 gccacgctgt acgacgtcgg cttcaaccac ttctggcgcg cgccctccgc cgagcatccg
      361 ggcgacctgc tctacatcca gggccacagc tcgccgggca tctactcgcg ctccttcctc
      421 gaaggccgca tcagcgaatc gcagctcgac cacttccgca tggaagtcga cggccgcggc
      481 atcagctcct acccgcatcc gtggctgatg cccgagtact ggcagacgcc gaccgtgtcg
      541 atgggcctcg gcccgatcag cgcgatctac caggcgcgca gctggaagta cctcgaaggc
      601 cgcggcctga tgccgaagac cgaccgcaag gtctggtgct tcctcggcga cggcgagacc
      661 gacgagccgg agtcgctcgg cgcgatctcg gtcgccggcc gcgagggcct cgacaacctg
      721 gtgttcgtcg tcaactgcaa cctgcagcgc ctcgacggcc cggtgcgcgg caacggcaag
      781 atcatccagg agctggaagg ccagttccgc ggcgccggct ggaacgtcat caagctggtg
      841 tggggcagct actgggatcc gctgctcgcg cgcgacacca ccggcaagct gcgccagctg
      901 atgatggaaa ccgtcgacgg cgagtaccag aactgcaagg ccttcggcgg caagtacacg
      961 cgcgaccatt tcttcggcaa gtacccggag accgcgcagc tggtggccag cctgtcggac
     1021 gaggacatct ggcgcctcaa ccgcggcggc cacgatccgc acaaggtcta cgccgcctac
     1081 gacgcggcgg tgaagcagac gggcatgccg accgtgatcc tcgccaagac ggtcaagggc
     1141 tacggcatgg gcggcgccgg cgaggcgctc aacccgaccc acggcaccaa gaagatggat
     1201 gactcggaca tccgcatctt ccgcgaccgc ttcaacatcc cggtcaccga caagcagctc
     1261 gaggccgacg tcatcccgtt cttccacccg ggcgagaagt cgccggaagt ggagtacatg
     1321 cacgagcgcc gcaaggccct cggcggctac ctgccgcagc gccggcgcaa ggcgtcgacc
     1381 tcgctggagg cgccgaagct cgaggtgttc gaacgcctgc tcaaggcgac cggcgagcgc
     1441 gagatcagca ccacgatggc gttcgtgcag gcgctgaaca tcgtcctgcg cgacaagcag
     1501 gtcggcccgc gctgcgtgcc gatcgtcgcc gacgaggccc gcaccttcgg catggagggc
     1561 atgttccgcc agctcggcat ctacgcgccg cagggccaga agtacaagcc ggtcgaccgc
     1621 gaccagctga tgtactaccg cgaggacgcc gccggccagg tgctggagga aggcatcacc
     1681 gagtgcggcg cgttctccag ctggatggcc tgcgccacca gctacagcac caacgacctg
     1741 cagctgctgc cgttctacat ctactactcg atgttcggct tccagcgcat cggcgactcc
     1801 gcctggcagg ccgccgacat gcgcgcgcgc ggcttcatgc tcggcgccac cgccggccgc
     1861 accacgctca acggcgaagg cctgcagcac gaggacggcc attcgatggt gcaggcctcg
     1921 ctgatcccga actgccgcag ctacgacccg accttcagct acgaagtcgc cgtcatcctc
     1981 cagcacggca tgcagcgcat gctcgccgag cagcgcgacg agtacttcta catcaccctg
     2041 atgaacgaga actacgcgca cccggagatg ccggcgggcg cgcaggacgg gatcatcaag
     2101 ggcatgtacc tcctgtcttc cacttccccc aatggcggaa acaccgctcc ggcaagcggc
     2161 gccgacagca ccgctcccgc aagcgggagg ggtcgaagcg gcgcagccgc ttcgggtgag
     2221 ggcaacgcga cctcgaagaa gaagtccaac accccgcacg tgcagctcct cggctccggc
     2281 accatcctgc gcgaagccat cgccgcggcc gagctgctcg acaaggaatt cggcgtcacc
     2341 gccgacatct ggtcctgccc gagcttcaac gagctcgcgc gcgagggcag cgaggccgag
     2401 cgctggaacc gcctgcatcc ggaagaggcg ccgcgcaagc cgtacatcac ccagctgctc
     2461 gaaggccgcc cgggcccggc gatcgccgcg accgactaca tccgcgccta tcccgagcag
     2521 gtccgcgcct tcgtgccgat gcgctacacc gtgctcggca ccgacggctt cggccgcagc
     2581 gacacccgcg agaacctgcg ccgccatttc gaggtcgacc gcttccacat cgcccacgcc
     2641 gcgatcgcgg cgctggcgca ggacggcaag atgaccggca aggacgtcgc ccgcgcgatc
     2701 aagctgttca ggatcgacag cgacaagccg aacccgctcg gcgcgtgatg tttcccttct
     2761 cccgcgtgag ggagaaggtg ccgaaggcgg atgcgggaaa ggcggccatc ggccgccttt
     2821 ctttttccat tgaaccgtcg tgtgaacctc ggacagagcg ccagcgagaa ggcgaacccg
     2881 atcgggggcg tgatctattc ccttctcccg cgtgcgggag aaggtgccga gggcgggtga
     2941 gggaaaggcg gccttgacct gcccggagtc gcctcgatgc ctcggcgccg cgccaccggc
     3001 ggcgccggcg cgacgaacca agacctgcgc ccacgccggg ccgtgactgg gttcccggaa
     3061 tgcgcttccg gcgcggcggc cgggtcgaac aggccggcgc cgcgcagtag ggttcgccac
     3121 gcagggggtc agaccacacg gggactgacc gatgaagaag cggtggaatc gttggcggac
     3181 cgacgactgg atcgtcgtga cctccggggt gctgggcgcc ctgatcggga tggggatgat
     3241 cggcagcgcg ctgatgcaat gagggcgcgg accacgccgt cccagcatcc cgttgcccag
     3301 gaagcaaccc gcgctcgcgc gccgcagcac gccaccgtgc cggcgcgcaa attttttgcg
     3361 cctggcgcgc tgcgggaacc tgcgccgcca cgtcgatagc gaccgctccc gcgccaccgt
     3421 cgcggcgctg tcgccgggga agtggtcatg caagcgcgtc cgcgagaagc cgccgcgcgg
     3481 cgcgtggtgt ccgctgcgga gcaggacaac ggcggccagc gcggcgtccc cgtgcagggc
     3541 gcgcgtgccg cgcccgccgt cgccatggcc gccccccggc cgtgctgccg tgagcaccgg
     3601 taccggcagg gcgccttcac ccgcgggcgt atgatttccg ggccgcgatc ccaagcggct
     3661 gtcccgcgag gacactggca tggctgacgt cttcgtctcc tacgcgcgtg gcgacaaggc
     3721 ccgcgtcgcg ccgctggtcg cggcggtcga ggcgcagggc tggtcggtct ggtgggatcc
     3781 ggagatcgtc cccggccagg aattcgacga ccagatcgac gtggagatcg accaggccaa
     3841 ggccgtgctg gtcgtctgga ctccggtctc ggtggcctcg cgctgggtgc gcggcgaagc
     3901 acgcgaagcc gccgagcgcg gcatcctcgt gccggtgcgc ttcgagcagg cgcggctgcc
     3961 gatggacgtg cgcgccatcc acaccaccga catggacggc tgggacggcg atcccgcggc
     4021 cccgcaggcg caggagttcc tgcgcgcgct ggcgacgacg atcgcgcgca cgcaggccgc
     4081 gctgtcggcg aaggcggccg ccgcgtcggc cacgacgccc gcggccaccg aaacggcacg
     4141 cttcaccatc tgcgtgctgc ccttcgccaa catgagcggc gatcccgagc aggaatactt
     4201 cagcgacggc atcaccgagg acatcatcac cgacctcagc aagatctccg cgctggcggt
     4261 gatctcgcgc aacagcgcct tcatgtacaa ggacaagcac gtcgacatcc ccaaggtcgc
     4321 gcgcgagctg aaagtgaccc acgtgctgga aggcagcgtg cgcaaggcgg gcggccgcgt
     4381 gcggatcagc gcgcagctgg tggatggcgc gaccaacagc cacctctggg ccgaacgcta
     4441 cgatcgcgac gccagcgaca ttttcgccct gcaggacgaa atctccgccg cgatcgtcac
     4501 ggcgctgcag ctgcggttgt tgcccgaaga gaagaaggcg atcgagcgcc gcggcaccga
     4561 caacgccgag gcccacaacc tctacctgat ggcgcggcag acctacatca ccgggcagga
     4621 agcggacgtc cgctccgccg aagcgatcat ccgcctgtgc gcgcgcgcga cggaattcga
     4681 tccgaactat gcgcaggcct gggcgctgat ggcggtgggc tacttcaagc tgcaccaggt
     4741 gaagggcggc cgctccgacg agggcctggc ggcggcggat cgcgcgctgg cgctggagcc
     4801 gaaactcgcc gaagcccacg cgatcaaggc ccagatcctg ctgcaggacg gcgaccccga
     4861 cgcggcggcg aaggaagtcg cgatcgcgct cgagctcgac cccgattcct acgaaaccaa
     4921 ccgctccgcc gcgcgcctga gctaccagct gcaccgccac gaagacgcca tccgctacta
     4981 caccaacgcc gtgaacctga tggacgccga cgtcaactcg gcgatgatgc tgatcagctg
     5041 ctacaccgcc gtcggcgaca tggccaaccg gcgccgcgcc gcggaaatgg cgctcaagcg
     5101 caccgagacc atcctcgccg ccgaccagta caactccggc gtcaccgcgt acagcgcgta
     5161 tgcgctcgcg gcgctcggcg aaggggagcg cgccaaggc
//
LOCUS       DATIQC010000430         1713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_628769, whole genome shotgun sequence.
ACCESSION   DATIQC010000430 DATIQC010000000
VERSION     DATIQC010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_628769"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VLM17_09245"
     CDS             <1..180
                     /locus_tag="VLM17_09245"
                     /inference="COORDINATES: protein motif:HMM:NF045061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65768.1"
                     /translation="TPAGAYRTTPLRGLWQHPPYFHDGSAPTLDAVVAHYDRVLGLRL
                     APAQRHDLVEYLKTL"
     gene            complement(269..>1713)
                     /locus_tag="VLM17_09250"
     CDS             complement(269..>1713)
                     /locus_tag="VLM17_09250"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR65769.1"
                     /translation="VELRGRLAAAADPDIGWFADAHGRVRAATLHREDGTLALMYGDG
                     DRFDEVLPLRDDGGFRPLGLSNDGGQVFGLSDEGSTQRDLVAFDPKQGRVVRTLFARP
                     GVDVQGAVLDADGEPIGATYFDAGHRVTAFLDPASRPLQAALARAFPDRSVDIAGRSD
                     DGRTLLLWVEASDLPATLYRYDVATSQADIVDVAAPWLQGRTFVPSRTLRARSRDGLP
                     VEAFLTLPAGDGLRALVVLPHGGPIGVSDHRLFNPEVQFLASLGYAVLQVNFRGSDGY
                     GTAFREAGYHAAGTAIEDDIDAALQAALAQEPLDASRVCIMGSSYGGYSALQSAVRWP
                     GRFRCAVSIAGIADRMLFFTASDSGNGAKTRAELERLVGDPRTEYAEMLATSPLYRYR
                     ALDLPVMLVHGREDTRVDYEHARRLVRMLNLAGHPPVMLSFDDEGHNWRDLGDIATAY
                     RGVAGFLREHLGADEGAATRVAGTGAAAAR"
BASE COUNT          240 a          621 c          632 g          220 t
ORIGIN      
        1 acccctgccg gcgcctatcg caccacgccg ctgcgcgggc tgtggcagca cccgccgtat
       61 ttccacgacg gcagcgcccc cacgctcgat gcggtggtcg cgcactacga ccgcgtgctg
      121 ggcctgcgcc tggcgcccgc ccagcggcac gacctggtgg agtacctgaa gacgctgtag
      181 cggcaggcac gcccagcgtg gaagcgcgcg ccacgcgcac ttccatgggt tgaggccgaa
      241 gcgggttccg ccgccccggc ggcggtcgct atcgcgcggc cgccgcgccg gtaccggcca
      301 cgcgcgtcgc ggcgccttcg tccgcgccca ggtgctcgcg caggaaccca gcgacgccac
      361 ggtacgcggt cgcgatgtcg ccgaggtcgc gccagttgtg gccttcgtcg tcgaagctga
      421 gcatcaccgg cgggtggccg gccaagttga gcatgcgcac cagccggcgg gcgtgctcgt
      481 agtcgacgcg ggtgtcctcg cggccgtgca ccagcatcac cggcaggtcg agcgcgcggt
      541 agcggtacag cggggacgtg gcgagcatct cggcgtattc ggtgcgcgga tcgccgacca
      601 ggcgttccag ctcggcgcgc gtcttcgcgc cgttgccgga atcgctggcg gtgaagaaca
      661 gcattcggtc ggcgatcccg gcgatcgaga ccgcgcagcg gaagcggccc ggccagcgca
      721 cggccgactg caatgcggaa tagccgccgt aactgctccc catgatgcac acgcgcgacg
      781 cgtccagcgg ctcctgcgcg agcgcggcct gcagcgcggc gtcgatgtcg tcctcgatgg
      841 cggtgccggc ggcgtggtag ccggcttcgc ggaacgcggt gccatagcca tccgagccgc
      901 ggaagttgac ctgcagcacc gcgtagccga gcgaggcgag gaactgcact tccggattga
      961 acaggcgatg gtcgctgacg ccgatcgggc cgccgtgcgg cagcaccacc agcgcacgca
     1021 gcccgtcgcc cgccggcagg gtgaggaagg cctcgaccgg caggccatcg cggctcctgg
     1081 cgcgcagcgt acggctgggc acgaatgtgc ggccctgcag ccacggggcg gcgacgtcga
     1141 cgatgtccgc ctgcgaggtg gcgacgtcat agcggtacag cgtcgccggc aggtcgctgg
     1201 cctcgaccca gagcagcagc gtgcggccgt cgtcgctgcg gccggcgatg tccaccgagc
     1261 ggtccgggaa agcgcgcgcc agcgcggcct gcaaaggccg cgacgcggga tcgaggaagg
     1321 cggtgacgcg gtggcccgca tcgaaatagg tcgcgccgat cggctcgccg tcggcgtcca
     1381 gcacggcgcc ctgcacgtcg acgccgggcc tggcgaacag cgtgcgcacc accctgccct
     1441 gcttcgggtc gaatgcgacc aggtcgcgct gcgtgctgcc ttcgtcgctc aggccgaaca
     1501 cctgcccgcc gtcgttcgac agcccgagcg gacggaagcc gccgtcgtcg cgcagcggca
     1561 gcacctcgtc gaagcggtcg ccgtcgccgt acatcagggc gagcgtgccg tcctcgcgat
     1621 gcagcgtcgc ggcacgcacg cggccgtgcg cgtcggcgaa ccagccgatg tcggggtcgg
     1681 cggccgcggc gaggcgcccg cgcagttcca ccg
//
LOCUS       DATIQC010000431         7308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_345970, whole genome shotgun sequence.
ACCESSION   DATIQC010000431 DATIQC010000000
VERSION     DATIQC010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7308
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345970"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..772
                     /locus_tag="VLM17_09255"
     CDS             <1..772
                     /locus_tag="VLM17_09255"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR65770.1"
                     /translation="GFVQYQGTFGRQQLQAALRRDDNDQFGGHATGSAAWGMDFARGL
                     RATASYGTAFKAPSFNELYFPFYGNEALRPETSRSAEVGIDQHLARWHWQLHAYQTEI
                     EELITYDSRLFMANNLDRARIRGVEFGVDAALAGWQLAAQATLADPRNRSQGADAGHL
                     LPRRPRRSARIDADRAFGAWQLGASWIAEGARYDDFGNTLRLGGYATLDLRAAHALGR
                     DWSLQAQLRNAFDRRYETAAYFNQPGREFGLSVRYAPK"
     gene            complement(809..1240)
                     /gene="pgaD"
                     /locus_tag="VLM17_09260"
     CDS             complement(809..1240)
                     /gene="pgaD"
                     /locus_tag="VLM17_09260"
                     /inference="COORDINATES: protein motif:HMM:TIGR03940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008375 - acetylglucosaminyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0042710 - biofilm formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="poly-beta-1,6-N-acetyl-D-glucosamine
                     biosynthesis protein PgaD"
                     /protein_id="HSR65771.1"
                     /translation="MRERFIIIARRNLRRRHRWLSDVLTAGLWIGWMLLWLPVVRKLR
                     EVVRLHVDFELAAREVLDVVTPISITHSLLALIGTVALLLLWSRLSKRKAGHAQGTLS
                     IADYARHFDLPEAEIDAGRASRVCVVAHDDAGAVTGIRVVE"
     gene            complement(1233..2531)
                     /gene="pgaC"
                     /locus_tag="VLM17_09265"
     CDS             complement(1233..2531)
                     /gene="pgaC"
                     /locus_tag="VLM17_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011051154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008375 - acetylglucosaminyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042710 - biofilm formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="poly-beta-1,6-N-acetyl-D-glucosamine synthase"
                     /protein_id="HSR65772.1"
                     /translation="MLAALLHTAWLGLQGFVYYYPLFMSWLWMMGAVLFCWRNERRRD
                     VEAVLRVPRDSLPPVSILIPCFNEGPHAEETMRHALALDYPDFEVLAINDGSRDDTGA
                     ILDALAADNPRLRVVHMDSNQGKAVALQGGSLMARHEILLCIDGDALLDPECARWMVY
                     HFMVNADVAAVTGNPRIRNRSTLLGRLQVGEFSSIVGMIKRAQRSFGRLFTVSGVITA
                     FRKSALHDVGYWSADMLTEDIDITWKLQRAGWDVRFEPRALVWILMPETLRGLWRQRL
                     RWATGGAQVLGKNLDVVLHPTQNHLWPLLLELVLSAFWSYALLALTLVWLAGLALPTG
                     AVPLVGSPLIPNWGSAFLGATCLIQFGLSKWLDSRYDHGLGRNYYWMVWYPLAFWLIN
                     IAATIVAYPRALMLRGRRARWVSPDRGAHLARGSAGGGRA"
     gene            complement(2537..4558)
                     /gene="pgaB"
                     /locus_tag="VLM17_09270"
     CDS             complement(2537..4558)
                     /gene="pgaB"
                     /locus_tag="VLM17_09270"
                     /inference="COORDINATES: protein motif:HMM:TIGR03938.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019213 - deacetylase activity [Evidence
                     IEA];
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="poly-beta-1,6-N-acetyl-D-glucosamine
                     N-deacetylase PgaB"
                     /protein_id="HSR65773.1"
                     /translation="MPSLSFPSPSLPRALVALLAGCLLLAHAAIGACAEPPVKLTVLS
                     YHEIAEPGDALDRTYAVTPANFAAQMQWLRETRHHFVSLGDVLADAAGKRPLPADAVL
                     VTFDDGYRSMYANAFPVLKAMHIPTVVALVGSWLEPKGGTVDFDGKPIPRDELLSWQE
                     IRALLRSGLVEVGSHTWNLHRGIPGNPQGNLEPAATTRAWLSGAHRYEDEPAYRRRVA
                     ADLRRNNALLEAKLGVVPRVVVWPYGRYNAEATRVAKSLGMPVGLSLDDGPDTARTPL
                     SALRRVLVMGSMSVADLAREIQLRNTFVFDDDRPVKAMHLDLDYIYDPDPAQQERNLG
                     RWLDRIAAMGVNTVYLQAFSDPDANGAADAVYFPSRHLPMRADLFNRVAWQIATRTPV
                     KRVYAWMPLLAWQLPQQDPAAHDTVVTLPNVANHLAMGYPRLSPFSPRARAAIRDIYE
                     DLGRCCTIDGILFHDDVTLSDYEDGSAWALRAYRGWGLPASVAAIRADPAEMARWTRR
                     KTAWLDDFAMDVARVVAAQQPGLATARNLYAQVMLNPRAEEWYAQSYASSLAHYDYTA
                     VMAMPYMEQAPDTNAFYRQLVDRMRAIPGATKKTVVELQTVDWRHGDAPLPAGEVADT
                     IRTLYGWGVQNVAYYPDNLYRDNPDPAQLRPVFDSKPNRAPAPAAAPTR"
     gene            complement(4688..6532)
                     /gene="glmS"
                     /locus_tag="VLM17_09275"
     CDS             complement(4688..6532)
                     /gene="glmS"
                     /locus_tag="VLM17_09275"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HSR65774.1"
                     /translation="MCGIVGAIADRDVVPVLIEGLKRLEYRGYDSAGIAVVDGDGASN
                     HVRRVRRTGRVAEMEAAAQAEHFVAQLGIGHTRWATHGGVTEGNAHPHISHDELALVH
                     NGIIENHEEQRDRLRALGYAFESQTDTEVIAHLIHYYRTQGASLIEAVQQAVRELKGA
                     YAIAVVDRRDPGRMVAARMGCPLLVGLGEGENFVASDVSAIVSATRRVIFLEEGDTAE
                     LTRTSVRVFDASGEPVQREVHVSDVSLASLELGPYRHFMQKEIHEQPRAVADTIEAVI
                     DNNGFSASLFGPDAESVLRDIEGVQILACGTSYYAGLTARYWIESIVGLPCAVDIASE
                     YRYRDVVANPKQLVVTISQSGETLDTMEALKYAKSLGQQRTLSICNVPESAIPRASRL
                     VYYTRAVAEIGVASTKAFTTQLVALFTLTCTLAKLRGRLSDDQEAAFLEALRQLPGSV
                     QHALNLEPQIVAWSERFAPKQHALFLGRGMHYPIALEGALKLKEISYIHAEAYPAGEL
                     KHGPLALVDAEMPVVVIAPNDALLEKVKSNIQEVRARGGEMYVFADADSHFGESEQVN
                     VIRTPRHVGILSPVVHAIPVQLLAYHAALARGTDVDKPRNLAKSVTVE"
     gene            6717..>7308
                     /locus_tag="VLM17_09280"
     CDS             6717..>7308
                     /locus_tag="VLM17_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014504684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSR65775.1"
                     /translation="MSIRDTSAQDRPVAPSVPRARQRRQWLLAGGAGLALVVVAAWLV
                     AGWSAGSQSVDAARVRIATVTRGDLVRDISADGRVIASNSPTLYAIAGGTVSLQVVAG
                     DAVKAGQALAEIDSPELRSKLAQEQATLAGLEAEASRAVLDAQLARSAARKLLDQAQI
                     DRQAAARDLERNQRGFDGGAVAQVDVARAQDNLKKAD"
BASE COUNT         1082 a         2582 c         2607 g         1037 t
ORIGIN      
        1 cggcttcgtc cagtaccagg gcacgttcgg ccgccagcag ctgcaggccg cgctgcgccg
       61 cgacgacaac gaccagttcg gcggccacgc caccggcagc gcggcgtggg ggatggactt
      121 cgcccgcggg ctgcgcgcca ccgccagcta cggcaccgcg ttcaaggcgc cgagcttcaa
      181 cgaactgtac ttcccgttct acggcaatga agcgttgcgc cctgaaacct cgcgcagcgc
      241 cgaggtcggc atcgaccagc atctggcgcg ctggcactgg cagctccacg cctaccagac
      301 cgagatcgag gagctgatca cctacgacag ccggctgttc atggccaaca acctcgaccg
      361 cgcgcgcatc cgcggcgtgg aattcggcgt cgacgccgca ctcgccggct ggcagctggc
      421 cgcgcaggcc acgctcgccg atccgcgcaa ccgcagccag ggcgccgatg ccggccacct
      481 gctgccgcgg cgcccccggc gcagcgcgcg catcgatgcc gaccgggcgt tcggcgcctg
      541 gcagctcggc gccagctgga tcgccgaagg cgcgcgctac gacgatttcg gcaacaccct
      601 gcgcctgggg ggctacgcca cgctcgacct gcgcgcggcg catgcgctcg gccgcgactg
      661 gtcgctgcag gcgcagttgc gcaacgcctt cgaccgccgc tacgaaacgg ccgcctactt
      721 caaccagcca gggcgcgagt tcggcctgag cgtgcgctac gcaccgaagt gaggcgccgt
      781 gcgccgcgcg tcgatccgcg cgcggcgctc attcgaccac gcggatgccg gtgaccgcgc
      841 cggcgtcgtc gtgcgcgacc acgcacaccc ggctggcgcg accggcgtcg atctcggctt
      901 ccgggaggtc gaagtggcgg gcgtagtcgg cgatcgagag cgtgccctgc gcatgcccgg
      961 ccttgcgctt ggacaaccgc gaccacagca gcagcagcgc gacggtgccg atcagcgcca
     1021 gcagcgagtg ggtgatcgag atgggcgtga ccacgtcgag cacctcgcgc gcggcgagct
     1081 cgaagtcgac gtgcaggcgc accacctcgc gcagcttgcg gaccaccggc agccacagca
     1141 gcatccagcc gatccacagg ccggcggtga gcacgtccga cagccagcgg tggcggcggc
     1201 gcaggttgcg ccgcgcgatg atgatgaacc gctcacgcac ggccgccccc cgcgctgccg
     1261 cgcgccaggt gcgcgccgcg gtccgggctg acccagcgcg cgcgccgccc gcgcagcatc
     1321 agggcacgcg ggtaggcgac gatggtcgcg gcgatgttga tcagccagaa cgcgagcgga
     1381 taccacacca tccagtagta gttgcggccc aggccgtggt cgtagcggct gtcgagccac
     1441 ttgctcagcc cgaactggat caggcaggtc gcaccgagga aggcgctgcc ccagttcggg
     1501 atcaacggcg atcccaccag cggcaccgcc cctgtcggca gcgccaggcc ggccagccac
     1561 accagcgtga gggccagcag cgcgtacgac cagaacgcgc tgagcaccag ctcgagcagc
     1621 agcggccaca ggtggttctg ggtcgggtgc agcaccacgt cgaggttctt gcccagcacc
     1681 tgcgcgccgc cggtggccca gcgcaggcgc tgccgccaca gcccgcgcag ggtttccggc
     1741 atcaggatcc agaccagcgc gcgcggctcg aaccggacgt cccagccggc gcgctgcagc
     1801 ttccaggtga tgtcgatgtc ctcggtgagc atgtccgcgc tccagtagcc gacgtcgtgc
     1861 aacgccgact tgcggaacgc ggtgatcacg cccgacacgg tgaacaggcg gccgaagctg
     1921 cgctgcgcgc gcttgatcat gccgacgatc gaggagaact cgccgacctg cagtcggccg
     1981 agcagggtgg agcggttgcg gatgcgcggg ttgcccgtca ccgcggcgac gtcggcgttg
     2041 accatgaagt ggtacaccat ccagcgcgcg cactcgggat cgagcagcgc gtcgccgtcg
     2101 atgcacagca ggatctcgtg gcgggccatc aggctcccgc cctgcagcgc gaccgccttg
     2161 ccctggttgc tgtccatgtg cacgacgcgc aggcgcggat tgtccgcggc gagcgcgtcg
     2221 agtatcgcgc cggtgtcgtc ccggctgccg tcgttgatcg ccagcacctc gaagtccgga
     2281 taatccagcg ccagcgcgtg gcgcatggtc tcttcggcgt gcggcccctc gttgaagcac
     2341 gggatcagga tgctgaccgg cggcagcgaa tcgcgcggca cgcgcagcac cgcctcgacg
     2401 tcgcgccggc gctcgttgcg ccagcagaac agcaccgcac ccatcatcca caaccacgac
     2461 atgaacagcg ggtagtagta gacgaagccc tgcaggccca gccaggcggt gtgcaacagg
     2521 gcggcgagca tcgtggtcac cgggtcggcg ccgcggccgg tgcgggcgcg cggttgggct
     2581 tgctgtcgaa caccggccgc agctgtgccg gatcggggtt gtcgcggtag aggttgtccg
     2641 ggtagtaggc gacgttctgc acgccccagc catacagggt gcggatggtg tccgccacct
     2701 cgcccgccgg cagcggggcg tcgccatggc gccagtcgac cgtctgcagt tcgaccaccg
     2761 tcttcttcgt cgcgccggga atggcccgca tgcgatcgac cagctgccgg tagaacgcgt
     2821 tcgtgtccgg cgcctgctcc atgtacggca tcgccatcac ggcggtgtag tcgtagtgcg
     2881 cgagcgagct cgcatacgac tgcgcgtacc actcctccgc gcgcgggttg agcatcacct
     2941 gcgcgtacag gttgcgcgcg gtcgcgaggc ccggctgctg cgcggccacg acccgcgcca
     3001 cgtccatcgc gaagtcgtcc agccacgccg tcttgcgccg cgtccaccgc gccatctccg
     3061 ccgggtcggc gcggatcgcc gcgaccgatg ccggcaggcc ccagccgcga taggcccgca
     3121 atgcccatgc gctgccgtcc tcgtagtcgg acagcgtcac gtcgtcgtgg aacaggatgc
     3181 cgtcgatggt gcagcagcgg ccgaggtcct cgtagatgtc gcgaatcgcg gcgcgcgcgc
     3241 gcggcgagaa cggcgacagc cgcgggtagc ccatggccag gtggttggcg acgttgggca
     3301 gggtcaccac ggtgtcgtgc gcggccggat cctgctgtgg cagctgccag gcgagcagcg
     3361 gcatccatgc atacacgcgc ttgaccggcg tgcgcgtggc gatctgccag gcgacgcggt
     3421 tgaacaggtc cgcgcgcatc ggcaggtgcc ggctggggaa gtacaccgca tcggcggcgc
     3481 cgttggcgtc gggatcggag aaggcctgca ggtagaccgt gttcacgccc atcgcggcga
     3541 tccggtccag ccatcggccg aggttgcgtt cctgctgcgc cggatccggg tcgtagatgt
     3601 agtcgaggtc caggtgcatc gccttgaccg gacggtcgtc gtcgaacacg aaggtgttgc
     3661 gcagctggat ctcgcgcgcg aggtcggcca ccgacatgct gcccatcacc agcacgcgcc
     3721 gcagcgccga cagtggcgtg cgcgcggtgt ccgggccgtc gtcgaggctg agcccgaccg
     3781 gcatgccgag cgacttggcg acgcgcgtcg cctcggcgtt gtagcgcccg tacggccaga
     3841 cgaccacccg cgggacgacc ccgagcttcg cctccagcag cgcgttgttg cggcgcaggt
     3901 cggcggcgac gcggcgccgg tacgccggct cgtcctcgta gcgatgcgcg ccggaaagcc
     3961 atgcccgggt ggtcgccgcg ggttccaggt tgccctgcgg attgccgggg atgccgcggt
     4021 gcaggttcca ggtgtggctg ccgacctcga ccaggccgct gcgcagcagc gcgcggatct
     4081 cctgccagga cagcagctcg tcgcgcggga tgggcttgcc gtcgaaatcg accgtgccgc
     4141 ccttcggttc cagccagctg ccgaccagcg ccaccaccgt cgggatgtgc atcgccttca
     4201 gcaccgggaa tgcgttggcg tacatcgacc ggtagccgtc gtcgaaggtc accagcaccg
     4261 catccgccgg cagcggccgc ttgccggcgg cgtcggcgag cacgtcgccg agactgacga
     4321 agtgatggcg ggtctcgcgc agccactgca tctgcgcggc gaagttggcc ggggtcaccg
     4381 cgtaggtgcg atcgagcgcg tcgccgggct cggcgatctc gtggtagctg agcacggtca
     4441 gcttgaccgg cggctcggcg caggcgccga tggcggcatg cgcgagcagc aggcagccgg
     4501 cgagcagcgc cacgagcgcc cgcgggaggc tcggcgacgg gaaggaaagc gaaggcatcg
     4561 ggcagcggac ggcaagacgg ggagaggcac gcatgcgcgt tgcgcgacgc gatcgccgcg
     4621 cgcgagcccg tgcacagtct agcggcggcc gtcggccgcc tgcgttacgg cgctgtaatg
     4681 tccggcgcta ctcgaccgtc accgacttgg ccaggttgcg cggcttgtcc acgtcggtcc
     4741 cgcgcgccag cgcggcgtgg taggcgagca gctgcaccgg gatcgcgtgc accaccggcg
     4801 acaggatgcc gacgtggcgc ggcgtgcgga tcacgttgac ctgctcggat tcgccgaagt
     4861 ggctgtcggc gtcggcgaac acgtacatct cgccgccgcg cgcgcgcact tcctggatgt
     4921 tggacttcac cttctccagc agcgcgtcgt tcggcgcgat caccaccacc ggcatctccg
     4981 cgtcgaccag cgcgagcgga ccgtgcttga gctcgccggc cgggtacgcc tcggcgtgga
     5041 tgtaggagat ttccttcagc ttcaatgcgc cttccagggc gatcggataa tgcatgccgc
     5101 gaccgaggaa cagcgcgtgc tgcttgggcg cgaaacgctc ggaccaggcg acgatctgcg
     5161 gctccaggtt gagcgcgtgc tgcacgctgc cgggcagctg gcgcaacgcc tcgaggaagg
     5221 cggcctcctg atcgtccgag aggcggccgc gcagcttggc cagggtgcag gtcagggtga
     5281 acagcgccac cagctgggtg gtgaacgcct tggtcgaggc gacgccgatc tcggcgacgg
     5341 cgcgggtgta gtagaccagc ctgctggcgc gcgggatcgc gctttcgggg acgttgcaga
     5401 tcgacagcgt gcgctgctgg ccgagcgact tggcgtactt gagcgcctcc atcgtgtcga
     5461 gcgtctcgcc cgactgcgag atcgtcacca ccagctgctt cgggttggcc acgacgtcgc
     5521 ggtagcggta ctcgcttgcg atgtcgaccg cgcacggcag gccgacgatc gactcgatcc
     5581 agtagcgcgc ggtcaggccg gcgtagtagc tggtgccgca ggcgaggatc tgcacgccct
     5641 cgatgtcacg cagcaccgat tccgcatccg ggccgaacag cgacgccgag aagccgttgt
     5701 tgtcgatcac cgcctcgatc gtgtcggcga ccgcgcgcgg ctgctcgtgg atctccttct
     5761 gcatgaagtg gcggtacggg ccgagctcga gcgaggcgag cgagacgtcg gacacgtgca
     5821 cctcgcgctg caccggctcc ccgctggcgt cgaacacccg caccgacgtg cgcgtcagct
     5881 cggcggtgtc gccctcctcg aggaagatca cccggcgcgt ggccgacacg atcgccgaca
     5941 cgtcggaggc gacgaagttc tcgccctcgc cgaggccgac cagcagcggg cagcccatgc
     6001 gcgcggcgac catgcgcccg gggtcgcgcc tgtcgaccac ggcgatcgcg taggcgccct
     6061 tgagctcgcg caccgcctgc tgcacggcct cgatcaggct cgccccctgc gtgcggtagt
     6121 aatggatgag gtgcgcgatg acctcggtgt cggtctgcga ctcgaaggcg tagccgagcg
     6181 cgcgcaggcg atcgcgctgc tcctcgtggt tctcgatgat gccgttgtgc acaagcgcca
     6241 gctcgtcgtg gctgatgtgc gggtgcgcgt tgccttcggt cacgccgccg tgcgtcgccc
     6301 agcgggtgtg gccgatgccg agctgcgcga cgaaatgctc ggcctgcgcc gcggcctcca
     6361 tctcggcgac gcggccggtg cggcgcacgc ggcggacgtg gttggacgcg ccgtcgccat
     6421 cgaccaccgc gatgcccgcg gaatcgtagc cgcggtattc caggcgcttg aggccttcga
     6481 tcaggaccgg aaccacatcg cgatccgcga tcgcgccgac gatgccgcac atgctggggc
     6541 gtgctcctgc tggggccgcc agtctagcgg acgggcgggc cccgcactgt ccggcggaca
     6601 gcgtggtgtc cgcgtgccca cccggacagt gcggacattc ccccttgaaa tcaatgtgtt
     6661 gcagttggca cgactcctgc ttgaacggag cacgaccttc ccgcagcgaa cgccgcatga
     6721 gcatccgcga tacctccgcc caggaccgcc cggtcgcccc gtccgtgccg cgggcgcgcc
     6781 agcgccggca gtggctgctg gccggcggcg ccggcctggc cctcgtcgtc gtggcggcgt
     6841 ggctggtcgc cggctggagc gccggcagcc agtcggtcga cgccgcgcgc gtgcgcatcg
     6901 ccaccgtcac ccgcggcgac ctggtgcgcg acatctccgc cgacggccgg gtgatcgcct
     6961 ccaacagccc caccctgtac gcgatcgccg gcggcacggt gagcctgcag gtggtcgcag
     7021 gcgacgcggt caaggctggc caggcgctcg ccgagatcga cagccccgag ctgcgcagca
     7081 agctcgcgca ggaacaggcc acgctcgccg gcctggaggc ggaggccagc cgcgccgtgc
     7141 tcgacgcgca actcgcgcgc tcggccgcgc gcaagctgct cgaccaggcg cagatcgacc
     7201 gccaggccgc ggcgcgcgac ctggagcgca accagcgcgg cttcgacggc ggcgcggtcg
     7261 cgcaggtgga tgtcgcgcgc gcgcaggaca acctgaagaa ggccgaca
//
LOCUS       DATIQC010000432         4118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_593725, whole genome shotgun sequence.
ACCESSION   DATIQC010000432 DATIQC010000000
VERSION     DATIQC010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4118
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_593725"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(331..867)
                     /locus_tag="VLM17_09285"
     CDS             complement(331..867)
                     /locus_tag="VLM17_09285"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011551675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSR65776.1"
                     /translation="MLTVGQKFPAFNLKATVSNDLKNAFVDITNETYKGKWLVVFFYP
                     KDFTFVCPTEITGFAKLDQAFKDRDAQLLTGSTDSEFVHHAWRTHHKDLNALPFPMLA
                     DIKRELVSALGILGDDGVAQRATFIVDPDGVIQFVYVTAGSVGRNPEEVLRVLDALQT
                     DELCPCNWHKGEETLKVA"
     gene            1001..1981
                     /locus_tag="VLM17_09290"
     CDS             1001..1981
                     /locus_tag="VLM17_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017463994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HSR65777.1"
                     /translation="MNLRDLRYLVALADHKHFGRAAAASFVSQPTLSTQIRKLEDELG
                     VALVERAPRRVMLTPVGREIAERARRVLAEVGQMTEIARRSQDPEAGTVRLGLFPTLA
                     PYLLPHVLPRIRARFPRLELLLVEEKTDQILARLGDGRLDAGLLALPLHDEQLHVEPL
                     FEEPFVLAVPETHPFARRDKPLDLRDLDDQHLLLLEEGHCLRDQALDVCRAAGASERD
                     GFRATSLETLRQMVAAGVGITLLPTLAVQPPVPPSPDVRLLPFKGRPPSREIAMAWRR
                     SSAMGGFLMQLAQEFRALPRELLRPAGLPSKTAGGTAAAAAPKRAAGKRR"
     gene            1978..2619
                     /locus_tag="VLM17_09295"
     CDS             1978..2619
                     /locus_tag="VLM17_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65778.1"
                     /translation="MSTRTVVALLAVAAVGWWYSPLSPRVPAVAAHAAGAIPRCPLPP
                     PVLPGAPPLQSDVPGDLAPFRLQAATLTPLAGFSVEARVLAREDYHLGREADLSPTDL
                     ALGWGRMREDAVLARLDISQSGRWYQYRWRDTPPLPPDEIVRSSANMHMIPANGDVAA
                     ALHRVRRDERVRIDGWLVEADASDGWRWRSSLTREDSGGGACEVVYVCAITPR"
     gene            complement(2686..3336)
                     /gene="msrA"
                     /locus_tag="VLM17_09300"
     CDS             complement(2686..3336)
                     /gene="msrA"
                     /locus_tag="VLM17_09300"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014089456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HSR65779.1"
                     /translation="MLGIGAYKQRMPRAEDALPGRAAEMPLRNAHAVHGAPLRGDFPG
                     LMQVQFGMGCFWGAERRFWSMPGVVTTAAGYSGGHTPNANYREVCSGQTGHAETVLVV
                     YDPAKVSFDQLLQAFWESHDPTQGMRQGNDTGTQYRSAIYCTTPGQHAAALASRDAYQ
                     RRLRDAGHGDITTEIRYPAPPFYYAEDEHQQYLAKNPRGYCGLGGTGVSCPVGTGA"
     gene            complement(3422..>4118)
                     /locus_tag="VLM17_09305"
     CDS             complement(3422..>4118)
                     /locus_tag="VLM17_09305"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HSR65780.1"
                     /translation="LDLWMWHRSILYVGVGLATLLGNFQVFALAGYGALVLGEHGGWR
                     LWAGLLLAIAGLALLLAPGWSGLDARFHAGVAYGLGTAVAYAGFLIAFRAAQLRRADG
                     RRAPAANEALLWWLCLFSAALLLAMTLVEGGSLAPRGARDWGALLAYALIAQVFGWLV
                     IGKVMPKLAAGVLGLCLLLQPLLAYLWDALLFGTRLGPLGLLGLLLSLAGIFLGLTRA
                     QPPREARAADARP"
BASE COUNT          574 a         1419 c         1548 g          577 t
ORIGIN      
        1 tgcctgccgt cgaggccggc ggcgccggtc tcgctcagca ccgagtcgag gttgagcttg
       61 aggtccttgg cgtagtcggg cagggcgttg cgcaggtcgg tgaggctcat ggacgtctcc
      121 agtcgtggtc gtgccggacg ccgcgggcgc agggcatgcg aagccggcgg caggaggaag
      181 gtcgcgctga tcgcgggccg cggagcgggc gctggcaggt ggaaccgaaa acaaaggcgg
      241 ccgtagccgc ctttgcgccg cggggccggg gagggacgtg ccgcgcggat ggtcgccaac
      301 ggcgcctggc gggcaggcgc cgccggtcgg tcaggcgacc ttgagcgtct cttcgccctt
      361 gtgccagttg cacgggcaca gctcgtcggt ctgcagcgcg tcgagcacgc gcagcacttc
      421 ctccgggttg cggccgacgc tgccggcagt gacgtagacg aactggatca cgccgtccgg
      481 gtcgacgatg aaggtggcgc gctgcgccac gccgtcgtcg ccgaggatgc ccagcgccga
      541 gaccagctcg cgcttgatgt cggcaagcat ggggaacggc agggcgttga ggtccttgtg
      601 gtgggtgcgc caggcgtggt gcacgaactc gctgtcggtc gagccggtca gcagctgcgc
      661 atcgcggtcc ttgaacgcct ggtcgagctt ggcgaagccg gtgatctcgg tcgggcagac
      721 gaaggtgaag tccttcgggt agaagaacac caccagccac ttgcccttgt aggtttcgtt
      781 ggtgatgtcg acgaacgcgt tcttcaggtc gttcgagacg gtcgccttga ggttgaaggc
      841 gggaaatttc tggccgacgg tcagcatctt ttttcgactc ctgtcgtgtg gtggggaagg
      901 gcgtggcccg aggcagcgaa gcggattgtg cgcgccgtgg attgatcggg gaaatgaatt
      961 gttcctatga tggcaatagc catcgccgat ggagcgcccg atgaacctgc gggacctgcg
     1021 atatctggtc gcgctcgccg atcacaagca tttcggccgc gccgccgcgg ccagcttcgt
     1081 cagccagccg accctgtcga cccagatccg gaagctcgag gacgagctgg gcgtggccct
     1141 ggtggagcgc gcgccgcgcc gggtgatgct gacgccggtg gggcgcgaga tcgccgagcg
     1201 cgcgcgccgg gtgctggccg aggtcgggca gatgaccgag atcgcgcggc gcagccagga
     1261 cccggaggcg gggaccgtac gcctcgggct gttccccacg ctcgcgccct acctgctgcc
     1321 gcacgtgctg ccgcgcatcc gcgcgcgctt cccgcggctg gaactgctgc tggtggagga
     1381 gaagaccgac cagatcctcg cccgcctggg cgacgggcgg ctggacgcgg gcctgctggc
     1441 gctgccgctg catgacgagc agctgcacgt cgagccgctg ttcgaggagc cgttcgtgct
     1501 ggcggtgccg gagacgcacc cgttcgcgcg gcgcgacaag ccgctggacc tgcgcgacct
     1561 ggatgaccag cacctgctgc tgctggagga gggccactgc ctgcgcgacc aggcgctgga
     1621 cgtgtgccgc gccgccggcg ccagcgagcg cgacggcttc cgcgcgacca gcctggaaac
     1681 gctgcgacag atggtggcgg cgggcgtggg catcaccctg ctgccgacgc tggcggtgca
     1741 gccgccggta ccgccgtcgc cggacgtgcg cctgctgccg ttcaagggca ggccgcccag
     1801 ccgcgagatc gcaatggcat ggcggcgcag ctccgcgatg ggcggtttcc tgatgcagct
     1861 ggcgcaggag ttccgtgcgt tgccgcgcga actgctgcgg ccggctggcc ttccgtcgaa
     1921 aaccgccggg ggcacggccg ccgcggcggc gccgaagcgc gccgcgggga agcgcaggtg
     1981 agcacacgga ccgtggtcgc gctgctggcg gtcgctgcgg tcggctggtg gtattcgccg
     2041 ctgtcgccgc gcgtgccggc ggtggcggcg cacgcggccg gcgccatccc gcgctgcccg
     2101 ctgccgccgc cggtgctgcc cggcgcgcca ccgctgcaga gcgacgtgcc cggcgacctc
     2161 gcgccgttcc gcctgcaggc ggcgacgctc acgccgctcg ccggcttcag cgtcgaggcg
     2221 cgggtgcttg cgcgcgagga ctaccatctc ggccgcgagg cggacctgtc gccgaccgac
     2281 ctcgcgctcg gttggggccg catgcgcgag gacgccgtgc tcgcccggct cgacatctcg
     2341 cagtcgggcc gctggtacca gtaccgctgg cgtgacacgc cgccattgcc gcccgacgag
     2401 atcgtccgct ccagcgccaa catgcacatg atcccggcga atggcgacgt ggccgcggcg
     2461 ctgcatcgcg tacgcaggga cgagcgcgta cgcatcgacg gctggctggt cgaggccgac
     2521 gcatccgatg gctggcgctg gcgcagctcg ctcacgcgcg aggacagcgg cggcggcgcg
     2581 tgcgaagtgg tctacgtgtg cgcgatcacg ccacgctgaa gcgtcccgcc ggcgcgtgcc
     2641 tggcggcgac gacggtcgcg accggcgccg ccgccgcgga agggatcagg caccggtccc
     2701 caccgggcaa ctcacgcccg tgccgccgag cccgcagtac cccctcgggt ttttcgccag
     2761 gtactgctgg tgttcgtcct cggcgtaata gaacggcggc gccggatagc ggatctcggt
     2821 ggtgatgtcg ccgtggcccg cgtcgcgcag gcggcgctgg taggcatcgc ggctggcgag
     2881 cgcggcggca tgctgcccgg gcgtcgtgca gtagatcgcc gagcggtact gggtgccggt
     2941 gtcgttgccc tggcgcatgc cctgggtcgg gtcgtggctt tcccagaacg cctgcagcag
     3001 ctggtcgaag gagactttcg ccgggtcgta cacgaccagc acggtttccg cgtggccggt
     3061 ctgcccgctg cacacctcgc ggtagttcgc attcggcgta tggccgcccg agtagcccgc
     3121 cgcggtggtc accacgcccg gcatcgacca gaacctgcgc tccgcgcccc agaagcagcc
     3181 catgccgaac tggacctgca tgaggccggg gaagtcgccg cgcagcggag cgccgtgcac
     3241 ggcgtgggcg ttgcgcagcg gcatttccgc cgcgcggccg ggcagcgcgt cttccgcgcg
     3301 cggcatgcgc tgcttgtagg caccgattcc gagcatggga ccgcctcctg ccgtgggacc
     3361 tgggaaatgc ggcctgcggc gccggcttca agcgcgaggc tcgcctgcca cgtggcggga
     3421 ctcagggtcg cgcgtccgcc gcccgcgcct cgcgcggtgg ctgggcgcgg gtcaggccga
     3481 ggaagatgcc ggccagcgac agcagcagcc cgagcagccc gagcggcccc agccgggtac
     3541 cgaacagcag cgcatcccac aggtaggcga gcagcggctg cagcagcagg cacaggccga
     3601 gcacgccggc ggcgagtttc ggcatcacct tgccgatcac cagccagccg aacacctgcg
     3661 cgatcaatgc gtaggcgagc agtgcgcccc agtcgcgcgc gccgcgcggt gccagcgacc
     3721 cgccttcgac cagcgtcatc gccagcagca gcgcggcgct gaacaggcac agccaccaca
     3781 gcagcgcctc gttcgcggcg ggcgcgcgcc ggccgtcggc acgccggagc tgggcggcgc
     3841 ggaacgcgat caggaagccc gcgtaggcga ccgcggtgcc gagtccgtag gcgacgccgg
     3901 catggaagcg ggcatcgagg cccgaccagc ccggcgccag cagcagcgcg agcccggcga
     3961 tcgccagcag cagtcccgcc cacaaccgcc agccgccgtg ttcgccgagc acgagcgcgc
     4021 cgtagccggc gagcgcgaac acctggaagt tgcccagcag ggtggcgagg cccacgccga
     4081 cgtacaggat gctccggtgc cacatccaca ggtcgagc
//
LOCUS       DATIQC010000433         2304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_205320, whole genome shotgun sequence.
ACCESSION   DATIQC010000433 DATIQC010000000
VERSION     DATIQC010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205320"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /locus_tag="VLM17_09310"
     CDS             <1..549
                     /locus_tag="VLM17_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005921165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HSR65781.1"
                     /translation="ALAREDAALRYFGSGANAPVPLKRAGMRIGLHAKSLVVDDRVGV
                     VGTHNFDPRGDRYNTEAAVVVHDEAFAQALAASIDRDMAPANSWTIAPREKPPVLSGL
                     EYSLAKASERMPVFDLWPVRYATSYQYRPGPACPQPLSPFDPKFRQCYVAVGDFPEVS
                     LGLKPLLTRIFTAFGAGLAPIL"
     gene            777..968
                     /locus_tag="VLM17_09315"
     CDS             777..968
                     /locus_tag="VLM17_09315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65782.1"
                     /translation="MNTAPARESRAPFPPRNPSAPTAAAAPRYPERDFGVGYGRSSGY
                     ATTRTYAVAWTGAARFRCR"
     gene            1036..1473
                     /locus_tag="VLM17_09320"
     CDS             1036..1473
                     /locus_tag="VLM17_09320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HSR65783.1"
                     /translation="MSDASPFRRASTVADLNALSAGTAMEPLGIVFSELGRDYLRATM
                     PVDDRTRQPYGLLHGGASVLLAETLGSTAGGLCVDADEGVVGIEINANHLAAVREGVV
                     TGTARPLHVGRSTQVWEIRIEDEAGRLACVSRLTLAVIRRRPR"
     gene            1565..2185
                     /locus_tag="VLM17_09325"
     CDS             1565..2185
                     /locus_tag="VLM17_09325"
                     /inference="COORDINATES: protein motif:HMM:NF018508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HSR65784.1"
                     /translation="MALSLNFELSDRDLEHFHAAQAKAHKAAEGKSAQDIIDCAAKLL
                     KDAQSVQIPDFILQRLLRLDDMIAMVRDEAWALDAADRDRVLSALVYFCDPDDVIPDK
                     IEVLGYLDDAVMIELAVRELTHELDAYDDFCDFRQRQAERLGVEPAQVGRADWLGGRR
                     DELVDRMHQRRERDMGVMGMGYGRSSGYASSRSYARAWRPGMFSFR"
BASE COUNT          316 a          876 c          782 g          330 t
ORIGIN      
        1 gcgctcgccc gcgaggacgc cgcgctgcgc tatttcggca gcggcgccaa tgcgccggtg
       61 ccgctcaagc gcgccggcat gcgcatcggc ctgcacgcga agtcgctggt ggtggacgac
      121 cgcgtcggcg tggtcggcac ccacaacttc gatccgcgcg gcgaccgcta caacaccgag
      181 gccgcggtgg tggtgcacga cgaggcattc gcacaagcgc tcgccgccag catcgaccgc
      241 gacatggcgc cggcgaattc gtggacgatc gcgccacgcg agaagccgcc ggtgctgtcg
      301 ggcctggagt actcgctggc gaaggcgtcc gagcgcatgc cggtgttcga cctgtggccg
      361 gtgcgctacg cgaccagcta ccagtaccgg cccggcccgg cctgcccgca accgctgtcg
      421 ccgttcgatc cgaagttccg ccagtgctac gtcgcggtcg gcgatttccc ggaggtctcg
      481 ctcggcctca agccgctgct gacgcggatc ttcaccgcct tcggcgcggg actggcgccg
      541 atcctgtagc gcggttggcg gagttccgtg ccggcctgcg gcgacatgcg cggacgaccg
      601 gccatgcaac cgcccagcac cggcgcgcat ccctagcagc acggcgccga tccgccgtcc
      661 gtcccgcgat cctgccagcc gaccccggtc cacaggggtg acttccggcc catgtgtcgc
      721 tggttctggt gttgtagttt accaacacac cgcaacacac tccggcagga gatgccatga
      781 acaccgcccc cgcccgcgaa tcccgcgccc cgttcccccc gcgcaacccg tccgcgccga
      841 cggccgccgc cgccccccgc tatccggaac gcgacttcgg cgtcggctac ggccgcagca
      901 gcggctatgc caccacccgt acctacgcgg tcgcctggac cggcgccgcg cgcttccgct
      961 gccgttgacc gacgcgcggc cggcacggtc cctccccatt ccgtgccggc cgccgcgctc
     1021 gggtatcgtg gccggatgag cgacgccagt cccttccgcc gcgccagcac cgtcgccgac
     1081 ctcaacgccc tgtccgccgg caccgcgatg gagccgctgg gcatcgtctt cagcgaactc
     1141 ggccgcgatt acctgcgcgc gaccatgccg gtcgatgacc gcacccgcca gccctacggg
     1201 ctgctgcacg gcggcgcctc ggtgctgctg gccgaaacgc tcggcagcac cgccggcggc
     1261 ttgtgcgtgg acgcggacga aggcgtggtc gggatcgaga tcaacgccaa ccacctcgcc
     1321 gcggtgcgcg agggcgtggt caccggcacc gcccgcccgc tgcacgtggg ccgcagcacg
     1381 caggtatggg agatccgcat cgaggacgag gccggccgcc tggcctgtgt ctcgcggctg
     1441 accctggcgg tgatccgccg ccgtccgcgc tgaccgccgg cccgtcgcgg cgacgttcag
     1501 tttcattgac cggccgcgcg ggccgcccta gtctgcgcgt cttccctccc cgcacggtat
     1561 cgccatggcg ctctcgctca atttcgaact gtccgaccgc gacctcgagc acttccatgc
     1621 cgcgcaggcc aaggcgcaca aggcggccga gggcaagagc gcgcaggaca tcatcgactg
     1681 cgcggccaag ctgctgaagg atgcgcagtc ggtgcagatc cccgacttca tcctgcagcg
     1741 gctgctgcgc ctggacgaca tgatcgcgat ggtgcgcgac gaggcgtggg cgctggacgc
     1801 cgccgaccgc gatcgcgtgc tgtccgcgct ggtgtacttc tgcgacccgg acgacgtgat
     1861 cccggacaag atcgaggtgc tcggttacct cgacgatgcg gtgatgatcg agctcgccgt
     1921 gcgcgagctg acccacgaac tcgatgccta cgacgacttc tgcgacttcc gccagcgcca
     1981 ggccgagcgg ctgggcgtgg agccggcgca ggtcggccgc gccgactggc tgggcgggcg
     2041 ccgcgacgag ctggtcgacc gcatgcacca gcgccgcgag cgcgacatgg gcgtgatggg
     2101 catgggctac ggccgcagca gcggctacgc ctccagccgc agctacgcgc gcgcctggcg
     2161 gccggggatg ttcagcttcc gctgaccgac cgcccgcagg cgcggcgttg tcgtgccgca
     2221 cgcagggcct tccgtatcgt gacccgcatg aacgagccgc cattgcccgt cggcgttggc
     2281 gcgccggccg caggcggcgc cgcg
//
LOCUS       DATIQC010000434         9837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_28476, whole genome shotgun sequence.
ACCESSION   DATIQC010000434 DATIQC010000000
VERSION     DATIQC010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9837
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28476"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1530)
                     /gene="aceB"
                     /locus_tag="VLM17_09330"
     CDS             complement(<1..1530)
                     /gene="aceB"
                     /locus_tag="VLM17_09330"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014162003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HSR65785.1"
                     /translation="MSAVLQARDRQGVVVTRPAVGQETLLAPAALAFLADLHRRFEPA
                     RQERLAARRARQARFDAGALPGFRADTRAIRAGDWTVGPLPAALLDRRVEITGPTDPK
                     MVINALNSGANCYMADFEDSTAPTWANLLAGQDALGRAVAGTLDWTAPDGGKQASGRH
                     YALRPFAEQAVLLVRPRGWHLDEKHVLVDGARMSAALFDLGLFAFHNARALAAKDRGP
                     YFYLPKLECMEEAALWDAVLAHVEQALGLPRGQLKVTVLIETLPAAFEMDEILHALRA
                     RIAGLNCGRWDYIFSCIKTFRAHRDRVLPERAQVGMTQPFLTAYAELLVRTCHRRGAH
                     AMGGMAAQVPIAGDAAANEQALERVRADKLREVRAGHDGTWVAHPALVPLARAVFDAH
                     LAGGGPHQHAVLREDVGARGEAALAEALLRPALGTITRAGFENNVEVCVRYLAAWLDG
                     NGCVPIHWLMEDAATAEISRTQLWQWLHAQPPLHLDDGTPIDGALLERSLIGLPSKFA
                     DR"
     gene            1640..2578
                     /locus_tag="VLM17_09335"
     CDS             1640..2578
                     /locus_tag="VLM17_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSR65786.1"
                     /translation="MADGRPASPRFSYKADRLKPLRAFCQVIRLGSVSRAAEALFLSQ
                     PAITLQLQALEREFGARLFDRSGRRLQPTREGEALYALARPLVEGLDGLEAAFRAEVS
                     GLDAGELDIAAGSSTILYLLPGIVEAFRRHHPEVRLTLHNVTGAGGLNLLRSDAVDFA
                     VGSMLDVPADLDYAPVHEFAPMLITPVDHPLAAKAELALEDLSPYGLILPPKRLTTYR
                     MVDLVFQRNRVPYTVALEVGGWEVIKQYVAMGLGISIVTAICLTDADRARLAARPLAP
                     WFPARSYGVVVRKGKRLSPQARAFVDLVQAGRTDLR"
     gene            complement(2627..4036)
                     /locus_tag="VLM17_09340"
     CDS             complement(2627..4036)
                     /locus_tag="VLM17_09340"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR65787.1"
                     /translation="MAQVKALAWIIAAALALPAAVSAQDAVALDAQARARMGEGDATA
                     AIRLMREHVANHPDDQAAVLDLARYLTWNGDYAAAMRVLDAAPQARDGTDGQQVRAML
                     LAWAGRVDAAQAANAPLLQQAPEALLPNYTQAIALRQTARPRAALPYVEAVEQARPGS
                     RDATDLARATRIRTDSFVALDVQHGEDSDDLGRWTPALRAEVAQGEAIRYTAELGRWR
                     YTAPLSSPFVAIDGARSVAEDRALVGVRYAPGLRTTLGAAVGVSNLDGDGETLWRLSL
                     DQRASDSWRFGLLADHDRFAASPRALSLGIDRTGLAGSVHWTPDLLWTGDLWLRRDHY
                     GDGNDSLAVNAAVRRAVVRAPRFLLDLGGAVEHQHFDEDPGDGYYAPDNYRRFAATAS
                     AYASLGDNAGLSLQLGLGRQRDENFASWRRANDIAVALVFGIYSPWQLGLNAAYSERV
                     QMTGAYTGRSWGMTLTRRF"
     gene            complement(4024..5403)
                     /locus_tag="VLM17_09345"
     CDS             complement(4024..5403)
                     /locus_tag="VLM17_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR65788.1"
                     /translation="MATAPWFVLSPNALLSSIGLLRGPDKTIPTPAEDWRTAVVDVVI
                     PAYKEEDNIIHCLASLARQSKAPRNVILVDDGGKDETVPRARAYAAAAGLNLTVFERA
                     SSIGKTPTIKRQAREFDCDVEFILDGDTYLESPDYIERCVQELYQGVGIASACGTILP
                     MRPGDRRQLAQTPEFQRWHGAPTYDDPHAKRGRLHAFWWWITNTYRECLYLFLQRFVY
                     KGQMVYFGSITNPVGCAVAYRRKYIVDLFDKYEPLFGDDLTNSEDIFIGFALNNEGYR
                     NIQLQDVQARSEEPEVQRLPRQVYLWSSSFLQSCYYFDGLMRTPFKTVQRWRKRRQER
                     KSGVENLRKIQEQYRQPFGEKYTLQYGRPIGWAMFLGAAEKIGFPTSLIILLALRMWE
                     PLAVTMVAEVLVSMSVLFVVARGARLLTMLKGLLITPLRYVLMVADTITIGRFAADLW
                     LTGNRKWRK"
     gene            complement(5357..6385)
                     /locus_tag="VLM17_09350"
     CDS             complement(5357..6385)
                     /locus_tag="VLM17_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007513670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HSR65789.1"
                     /translation="MHVLITGGAGFIGSHLVDLHLACGDQVHVVDDLSTGVRANLAAH
                     EQNPNFRFDEADILTWDKLERAVGWADRIYHLAAVVGVYRVIAEPTKVLATNIAGCER
                     LLRAAHAGGWRPQVVLASSSEVYGHNDEDVLHEDQDLKVSTRAGTRWGYSVSKIADEA
                     LGLSYAQRFGIPAVVARFFNTIGPRQVGRYGMVVPRFVAQAVRNEPITVFGGGSQTRS
                     FCDVRDTVVALDALACRAGRDTVIANVGNDREISINDLAELVIARAGSRSQIRSVPLR
                     EAYGEDFEDIRRRRPSLARLRETTGFKHVYTLEQTIDDLIAIERQRMQGEHDGHRTLV
                     RPQSERAA"
     gene            complement(6536..7147)
                     /locus_tag="VLM17_09355"
     CDS             complement(6536..7147)
                     /locus_tag="VLM17_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005407645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HSR65790.1"
                     /translation="MPATATPPGHVLPLPPNVPRTPPNRFGRWLGRTLLRLGGWRMVG
                     AFPDIPKVVLIGAPHSSNWDGVWGFAAKLALGLDLKVLGKHQLFWWPLGLLMRGLGVI
                     AVNRSAAHGVVEQAAALLQQSDKFWFGLAPEGTRKPVERWKPGFWKIAKAAGVPVLPA
                     YFHYPDRIIGVGPPFELSDDMAADIARIRAWYRPWQGRHHGTP"
     gene            complement(7179..7598)
                     /gene="arfB"
                     /locus_tag="VLM17_09360"
     CDS             complement(7179..7598)
                     /gene="arfB"
                     /locus_tag="VLM17_09360"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HSR65791.1"
                     /translation="MLQVSDAIAIPDDELVERFVRSAGPGGQNVNKVATAVELRFDVA
                     HSPSLPEPLRTRLLARRDRRLTADGVLVISAQRFRTQERNREDARERLAAFLAAGLHV
                     PKPRVATRPTRASTLRRLDAKRGRSTLKRERTRRDWD"
     gene            complement(7620..8372)
                     /locus_tag="VLM17_09365"
     CDS             complement(7620..8372)
                     /locus_tag="VLM17_09365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011407362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSR65792.1"
                     /translation="MDAEALPVLLRDAWLAVVDKPAGLMVHDSALARGETDFAADRLR
                     VQFGRPVFLVHRLDRATSGCLLLAFDRDTASALGKVLMSREVEKDYLAVCRGWPEERF
                     SVDHPLDGGPGKPQKKPATTGFERLATCELDAPSAGFPTSRYALLRARPLTGRFRQIR
                     RHLKHASHHLVGDTSHGDGRHNRTFRMLGIHRMLLHARRLAFVHPVTGARVEACAPAD
                     AEFARALALFGSGAAGPGNEGLLPVHGIGSAG"
     gene            complement(8362..>9837)
                     /gene="ubiB"
                     /locus_tag="VLM17_09370"
     CDS             complement(8362..>9837)
                     /gene="ubiB"
                     /locus_tag="VLM17_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004084864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-polyprenylphenol 6-hydroxylase"
                     /protein_id="HSR65793.1"
                     /translation="KVGQILSPRRDLVPPDVADELALLQDRVAPFDGFAARALVEEAL
                     ARPIDVAFASFDTTPLASASVAQVHAATLPALAGGVPREVVVKVLRPGIEKQIGADIA
                     LLKSVAALVDRTHPSADKIRPREIVLEIENTLAAELDLQREGANASVLRRFWQDSPDL
                     YVPEVIWSHTAERALTMERVHGIPSDDIAALDAAGIDRHALAAKGVRVFYTQVFRDNF
                     FHADAHAGNIWVDADPARRADPRFIALDFGIVGQLSDEDQFYLAENFMAIFNRDYRRI
                     AELHVQAGWMPAHIRIDELEAAARAVCEPYFTRPLSEISLAEVLLKLFRTAQRYELTL
                     QPQLILLQKTLLNIEGIGRLLDPKIDIWAVAKPVLERILVARYSPRRLASEFRKRLPE
                     MVTHAPDMPRLLHAWLTQQVAGRHAVEIGSNDLRELARIVRSAQRRIIAAILGTGLLL
                     VAAVLYALDAGGAHLFGLPVTVLVAVVGGLWALLAAWPRGR"
BASE COUNT         1365 a         3430 c         3639 g         1403 t
ORIGIN      
        1 gcgatcggcg aacttgctgg gcaggccgat gagcgagcgc tcgagcagcg cgccgtcgat
       61 cggcgtgccg tcgtccaggt gcagcggggg ttgcgcgtgc agccattgcc acagctgcgt
      121 gcgcgagatc tcggcggtcg ccgcgtcttc catcagccag tggatcggca cgcagccgtt
      181 gccgtccagc cacgcggcga ggtagcgcac gcatacctcg acgttgttct cgaagccggc
      241 gcgggtgatc gtgccgagcg cgggcctgag cagcgcttcg gcgagcgcgg cctcgccgcg
      301 cgcaccgacg tcctcgcgca ggaccgcgtg ctggtgcggg ccaccgcccg ccaggtgcgc
      361 gtcgaacacc gcgcgggcca gcggcaccag cgccgggtgc gcgacccaag tgccgtcgtg
      421 cccggcgcgc acttcgcgca gcttgtcggc gcgcacgcgt tcgagcgcct gctcgttggc
      481 tgcggcgtcg ccggcgatcg gcacctgcgc ggccatcccg cccatcgcat gcgcgccgcg
      541 ccggtggcag gtgcggacca gcagttcggc gtacgccgtc aggaagggct gggtcatgcc
      601 gacctgggcc cgctcgggca gcacgcggtc gcggtgcgcg cggaaggtct tgatgcagga
      661 aaagatgtag tcccagcggc cgcagttgag gccggcgatg cgcgcgcgca gcgcgtgcag
      721 gatctcgtcc atctcgaacg ccgccggcag cgtctcgatc agcacggtga ccttcagctg
      781 cccgcgcggc aggccgagcg cctgctcgac gtgggcgagc acggcatccc agagcgccgc
      841 ttcctccatg cactcgagct tgggcaggta gaagtacggg ccgcggtcct tcgcagccag
      901 ggcgcgcgcg ttgtggaagg cgaacaggcc gaggtcgaac agcgcggcgg acatccgcgc
      961 gccgtcgacg agcacgtgct tctcgtcgag gtgccagccg cgcgggcgca ccagcagcac
     1021 cgcctgctcg gcgaagggcc tgagcgcgta gtgcctgcct gacgcctgct tcccgccgtc
     1081 gggcgcggtc cagtcgagcg tgccggcgac cgccctgccc agcgcgtcct ggccggcgag
     1141 caggttggcc caggtcggcg ccgtggaatc ctcgaagtcc gccatgtagc agttcgcgcc
     1201 ggaattgagc gcgttgatga ccatcttcgg atcggtcggg ccggtgatct cgacccgccg
     1261 gtcgagcagc gcggccggca gcgggccgac cgtccagtcg cctgcgcgga tcgcgcgggt
     1321 atcggcgcgg aagccgggca gcgcgccggc gtcgaaacgg gcctggcgcg cgcggcgcgc
     1381 ggcgaggcgc tcctgacggg cgggctcgaa gcggcggtgc aggtcggcga ggaaggccag
     1441 ggccgccggg gccaacaggg tctcctggcc gaccgccggc cgggtcacca ccacgccctg
     1501 gcgatccctc gcctgcagta ctgccgacat gtccttggct ccgtcgcccg ggacccagac
     1561 cgtacggggg cgtctgtgta tttgacaaac cagttttggc aatacgtatg atgagctggg
     1621 cttataggta ggtttcacca tggccgacgg ccgccccgcc tccccgcgct tctcctacaa
     1681 ggccgaccgg ctcaagccgc tgcgcgcctt ctgccaggtg atccggctcg gctccgtgtc
     1741 gcgcgcggcc gaggcgctgt tcctcagcca gccggcgatc accctgcagc tgcaggcgct
     1801 ggagcgggag ttcggcgcgc gcctgttcga ccgcagcggc cgccggctgc agccgacccg
     1861 cgagggcgag gcgctgtacg cgctggcgcg gccgctggtc gagggccttg acggcctgga
     1921 ggccgccttc cgcgcggagg tcagcggcct ggatgcgggc gagctcgaca tcgccgccgg
     1981 cagttcgacg atcctctacc tgctgccggg catcgtcgag gcgttccgcc ggcaccaccc
     2041 ggaggtgcgg ctgaccctgc acaacgtcac cggcgccggc ggcctcaacc tgctgcgctc
     2101 ggacgcggtc gatttcgcgg tcggctccat gctcgacgtg cccgccgacc tcgactacgc
     2161 accggtgcac gagttcgcgc cgatgctgat caccccggtc gaccatccgc tcgcggcgaa
     2221 ggccgaactg gcgctggagg acctgtcgcc gtacggcctg atcctgccgc ccaagcggct
     2281 gaccacctac cgcatggtcg acctggtctt ccagcgcaac cgcgtgccgt acacggtcgc
     2341 gctggaggtc ggcggctggg aggtgatcaa gcagtacgtg gcgatggggc tgggcatctc
     2401 catcgtcacc gcgatctgcc tcaccgacgc cgatcgcgcg cgcctcgcgg cgcgcccgct
     2461 ggcgccatgg tttccggcgc gcagctacgg cgtggtggtg cgcaagggca agcggctgtc
     2521 gccgcaggcg cgcgcgttcg tggacctggt acaggccggc cgcaccgacc tgcgttagcg
     2581 gaagcggacc cggactggcg tccggcgccc gcgccctgca cttgcgtcag aagcggcggg
     2641 tcagggtcat gccccagctg cggcccgtgt aggcgccggt catctgcacg cgctcgctgt
     2701 aggccgcgtt gaggccgagc tgccacggcg aatagatgcc gaacaccagc gcgacggcga
     2761 tgtcgttcgc gcgccgccac gaggcgaagt tctcgtcgcg ctggcggccg aggccgagct
     2821 gcagcgacag gccggcgttg tcgccgaggc tggcgtaggc gctggcggtc gcggcgaagc
     2881 ggcggtagtt gtcgggcgcg tagtagccgt cgcccggatc ctcgtcgaaa tgctggtgct
     2941 cgaccgcacc gccgaggtcg aggaggaaac gcggcgcgcg caccaccgcg cggcgcaccg
     3001 cggcattcac cgcgaggctg tcgttgccat cgccgtagtg gtcgcggcgc agccacaggt
     3061 cgcccgtcca cagcaggtcc ggcgtccagt gcacgctgcc ggccaggccg gtgcggtcga
     3121 tgcccagcga caacgcgcgc ggcgaagcgg cgaagcggtc gtggtcggcc agcaggccga
     3181 agcgccagct gtcgctggcg cgctggtcca ggctcagccg ccacagcgtc tcgccgtcgc
     3241 cgtcgaggtt cgacacgccg accgcggcgc cgagcgtggt gcgcaggccg ggtgcgtagc
     3301 gcacgccgac cagcgcgcgg tcctccgcca ccgagcgggc gccgtcgatg gcgacgaacg
     3361 gactcgacag cggcgcggtg tagcgccagc ggccgagctc ggcggtgtag cggatcgctt
     3421 cgccctgcgc gacctcggcg cgcagggccg gcgtccagcg gcccaggtcg tcggagtcct
     3481 cgccatgctg cacgtcgaga gcgacgaacg aatcggtgcg gatgcgggtg gcgcgggcga
     3541 ggtcggtcgc gtcgcggctg ccgggccggg cctgctcgac cgcctcgacg tacggcagcg
     3601 cggcgcgcgg ccgcgcggtc tggcgcagcg cgatcgcctg cgtgtagttg ggcagcagcg
     3661 cctccggcgc ctgctgcagc agtggcgcat tggcggcctg cgcggcgtcc acgcgcccgg
     3721 cccaggccag cagcatcgcg cgcacctgct gcccgtcggt gccgtcgcgc gcctgcggcg
     3781 cggcgtcgag cacgcgcatc gcggcggcgt agtcgccgtt ccaggtcagg tagcgggcga
     3841 ggtcgagcac cgcggcctgg tcgtcgggat ggttggcgac gtgctcgcgc atcagccgga
     3901 tcgcggccgt cgcgtcgcct tcgcccatgc gcgcgcgtgc ctgcgcgtcg agcgcgaccg
     3961 catcctgcgc ggacacggcg gccggcagcg cgagcgcggc ggcgatgatc caggcgagcg
     4021 ccttcacttg cgccatttgc ggttccccgt cagccagagg tcggccgcga agcggccgat
     4081 cgtgatcgtg tcggccacca tcagcacgta gcgcagcggc gtgatcagca gccccttgag
     4141 catggtgagc aggcgcgcgc cgcgcgcgac cacgaacagc accgacatcg acaccagcac
     4201 ctcggccacc atcgtcaccg ccagcggctc ccacatgcgc agggccagca ggatgatcag
     4261 cgaggtcggg aagccgatct tctccgccgc gccgaggaac atcgcccagc cgatcggccg
     4321 gccgtactgc agcgtgtact tctcgccgaa cggctggcgg tactgctcct ggatcttgcg
     4381 caggttctcg acgccgctct tcctttcctg ccggcgcttg cgccagcgct gcacggtctt
     4441 gaacggcgtg cgcatcaggc cgtcgaagta gtagcagctc tgcaggaacg aggacgacca
     4501 caggtacacc tgccgcggca ggcgctgcac ctcgggttcc tcggagcgcg cctgcacgtc
     4561 ctgcagctgg atgttgcggt aaccctcgtt gttgagggcg aagccgatga agatgtcttc
     4621 cgaattggtc aggtcgtcgc cgaacagcgg ctcgtacttg tcgaacaggt cgacgatgta
     4681 cttgcgccgg taggcgaccg cgcagcccac cggattggtg atgctgccga agtagaccat
     4741 ctggcccttg tagacgaagc gctgcaggaa caggtacagg cattcgcggt aggtgttggt
     4801 gatccaccac cagaacgcat gcaggcggcc ccgcttggca tgcgggtcgt cgtaggtcgg
     4861 cgcgccgtgc cagcgttgga attcgggcgt ctgcgccagc tggcggcggt cgccggggcg
     4921 catcggcagg atcgtgccgc acgcgctggc gatccccacg ccctggtaga gctcctgcac
     4981 gcagcgctcg atgtagtcgg gcgactccag gtaggtgtcg ccgtcgagga tgaactcgac
     5041 gtcgcaatcg aactcgcgcg cctggcgctt gatcgtcggc gtcttgccga tcgagctggc
     5101 gcgctcgaac acggtgaggt tcagccccgc cgcggccgcg tacgcgcgcg cgcgcggcac
     5161 ggtctcgtcc ttgccgccgt cgtcgacgag gatgacgttg cgcggcgcct tgctctgccg
     5221 cgccagcgag gcgaggcagt ggatgatgtt gtcctcctcc ttgtaggcgg gaatgacgac
     5281 gtcgaccacc gccgtccgcc agtcctcggc gggcgtgggg atcgtcttgt cgggcccgcg
     5341 cagcaggccg atcgagctaa gcagcgcgtt cggactgagg acgaaccagg gtgcggtggc
     5401 catcgtgttc cccctgcatg cgctggcgct cgatggcgat caggtcgtcg atcgtctgct
     5461 ccagcgtgta gacgtgtttg aagccggttg tctcgcgcag ccgcgccagg ctcgggcgac
     5521 ggcggcggat gtcctcgaag tcctcgccgt acgcctcgcg cagcggcacg gaacggatct
     5581 gcgaacggct gcccgcgcgc gcgatcacca gctcggcgag gtcgttgatg ctgatctcgc
     5641 ggtcgttgcc gacgttggcg atcacggtgt cgcggccggc gcggcaggcg agcgcgtcga
     5701 gcgcgaccac ggtgtcgcgc acgtcgcaga acgagcgggt ctggctgcca ccgccgaaca
     5761 cggtgatcgg ctcgttgcgc accgcctggg cgacgaagcg cggcaccacc atgccgtagc
     5821 gaccgacctg gcgcggcccg atcgtgttga agaagcgcgc gaccaccgcc gggatgccga
     5881 accgctgcgc gtacgacagg ccgagcgcct cgtcggcgat cttgctgacc gagtagcccc
     5941 agcgggtgcc ggcgcgggtc gagaccttca ggtcctggtc ctcgtgcagc acgtcctcgt
     6001 cgttgtggcc gtagacctcc gagctggagg ccagcaccac ctgcggcctc cagccgccgg
     6061 catgcgcggc gcgcagcagg cgctcgcagc cggcgatgtt ggtggcgagc accttggtcg
     6121 gctcggcgat cacccggtac acgccgacga cggcggccag gtggtagatg cggtcggccc
     6181 agccgacggc acgctcgagc ttgtcccagg tgaggatgtc cgcctcgtcg aagcggaagt
     6241 tggggttctg ctcgtgcgcg gcgaggttgg cgcgcacgcc ggtggacagg tcgtcgacca
     6301 cgtggacctg gtcgccgcag gccagatgca ggtcgacgag gtgcgaaccg atgaagccgg
     6361 caccgccggt gatgaggaca tgcatcgcgg gacccctgga cagcgtggtg agcgccacgt
     6421 gaaaaccgtg acagcctgct ccctccatga cgcaagacgc atgccatccc ggacaggcgg
     6481 gcgcccggcc ggtaccggcg gcgggcaccc gccggcccgg cgcggaccgg gccgctcagg
     6541 gggtgccgtg gtgccggccc tgccagggcc ggtaccaggc gcggatgcgg gcgatatcgg
     6601 cggccatgtc gtcgctcagc tcgaacggtg gcccgacgcc gatgatccgg tccggatagt
     6661 ggaaataggc cggcagcacc ggcacccccg cggccttcgc gatcttccag aacccgggct
     6721 tccagcgctc gaccggcttg cgggtgccct ccggcgccag tccgaaccag aatttgtcac
     6781 tctgctgcag cagcgcggcg gcctgctcga ccacgccgtg ggcggcgctg cggttgacgg
     6841 cgatcacgcc gaggccgcgc atcagcagcc cgagcggcca ccagaacagc tgatgcttgc
     6901 ccagcacctt caggtccagg ccgagcgcaa gcttggcggc gaagccccac accccgtccc
     6961 agttggacga atgcggcgcg ccgatcagca ccaccttcgg gatgtccggg aacgcaccga
     7021 ccatgcgcca gccacccagg cgcaggaggg tgcggccgag ccagcggccg aagcggttcg
     7081 gcggcgtgcg cggcacgttc ggcggcagcg gcagcacgtg gccgggtggc gtcgcggtcg
     7141 caggcattcc cccttccccc atgtcccgat ccctgcggct agtcccagtc gcggcgcgtg
     7201 cgctcgcgct tgagggtact gcgtccacgc ttggcgtcca gccggcgcag cgtcgaggcg
     7261 cgggtcgggc gggtcgcgac gcgcggcttg ggcacgtgca ggcctgcggc gaggaacgcg
     7321 gcgaggcgct cgcgcgcatc ctcgcggttg cgctcctggg tgcggaagcg ctgcgcgctg
     7381 atcaccagca cgccgtcggc ggtgaggcgg cggtcgcggc gcgccagcag gcgcgtgcgc
     7441 agcggctcgg gcaacgacgg cgagtgggcg acatcgaagc gcagctcgac cgcggtcgcg
     7501 accttgttga cgttctgccc gcccggaccg gcggaacgca cgaagcgctc gaccagttcg
     7561 tcgtcgggaa tcgcgatggc gtcgctcacc tgcagcatgc ggcgattgta gggtgggctt
     7621 cagcccgccg agccgatgcc atggacgggg agcaagccct cgttccccgg ccccgccgcg
     7681 ccggacccga acagggccag cgcgcgcgcg aactccgcgt ccgccggcgc gcacgcctcc
     7741 acccgcgcgc cggtcaccgg gtgcacgaag gcgagccgcc gcgcgtgcag cagcatgcga
     7801 tggatgccga gcatgcggaa cgtgcggttg tggcggccgt cgccgtggct ggtgtcgccg
     7861 accaggtggt gcgaggcgtg cttgaggtgg cggcggatct ggcggaagcg cccggtcagc
     7921 gggcgcgcac gcagcagcgc gtagcgcgag gtcgggaagc cggcggacgg cgcgtcgagc
     7981 tcgcaggtgg cgaggcgttc gaacccggtg gtcgccggct tcttctgcgg tttcccgggc
     8041 ccgccgtcga gcggatggtc gacgctgaag cgctcctccg gccaaccgcg gcagaccgcc
     8101 aggtagtctt tttcgacttc gcgcgacatc agcaccttgc cgagcgcgga ggcggtgtcg
     8161 cggtcgaagg cgagcagcag gcagccgctg gtcgcgcggt cgagccggtg caccaggaac
     8221 accggccggc cgaactggac gcgcagccgg tcggcggcga agtccgtctc gccgcgcgcc
     8281 agcgcgctgt cgtgcaccat caggccggca ggcttgtcga ccaccgccag ccacgcgtcg
     8341 cgcagcagga ccggtagcgc ctcagcgtcc acgcggccac gccgcgagca gcgcccacag
     8401 gccgccgacc acggcgacca gcaccgtcac cggcaggccg aacaggtgcg cgccgccggc
     8461 gtcgagcgcg tacagcaccg ccgccaccag cagcaggccg gtgcccagga tcgcggcgat
     8521 gatccgccgc tgcgcactac gcacgatccg cgcgagctcg cgcaggtcgt tcgaaccgat
     8581 ctcgaccgcg tgccggcccg cgacctgctg ggtcagccat gcgtgcagca ggcgcggcat
     8641 gtccggcgcg tgcgtgacca tctcgggcag gcgcttgcgg aattcggacg cgagccggcg
     8701 cgggctgtag cgcgcgacga ggatgcgctc gagcaccggc ttggccaccg cccagatgtc
     8761 gatcttcggg tcgagcaggc ggccgatgcc ctcgatgttg agcagggtct tctgcagcag
     8821 gatcagctgc ggctgcaggg tcagctcgta gcgctgcgcg gtgcggaaca gcttgagcag
     8881 cacctcggcc aatgaaatct ccgacagcgg ccgggtgaag tacggttcgc agaccgcgcg
     8941 cgccgcggcc tcgagctcgt cgatgcggat gtgcgcgggc atccagccgg cctgcacgtg
     9001 cagctcggcg atccggcggt agtcgcggtt gaagatcgcc atgaagttct cggcgaggta
     9061 gaactggtcc tcgtccgaga gctggccgac gatgccgaag tcgagcgcga tgaagcgcgg
     9121 gtcggccctg cgcgcgggat cggcgtccac ccagatgttg ccggcgtgcg cgtcggcgtg
     9181 gaagaagttg tcgcggaaca cctgggtgta gaacacgcgc acgcccttgg cggcgagcgc
     9241 atggcggtcg atgccggccg cgtcgagggc ggcgatgtcg tccgacggga tgccgtgcac
     9301 gcgctccatc gtcagcgcgc gttcggcggt gtgcgaccag atcacttccg gcacgtacag
     9361 gtcgggcgag tcctgccaga agcggcgcag cacgctcgcg ttcgcgcctt cgcgctgcag
     9421 gtcgagttcg gcggccaggg tgttctcgat ctcgaggacg atttcgcgcg ggcggatctt
     9481 gtcggcggac ggatgggtgc ggtcgaccag cgcggccacc gacttcagca gcgcgatgtc
     9541 ggcgccgatc tgcttttcga tcccggggcg gagcaccttg accaccacct cgcgcggcac
     9601 gccgccggcc agcgcgggca gcgtcgcggc gtgcacctgc gcgaccgacg cggacgcgag
     9661 cggggtggtg tcgaaggagg cgaaggcgac gtcgatcggc cgcgccagcg cttcctcgac
     9721 cagcgcgcgc gcggcgaaac cgtcgaaggg cgcgacgcgg tcctgcagca gcgcgagttc
     9781 gtcggcgacg tccggcggca cgaggtcgcg gcggggggaa aggatctggc cgacctt
//
LOCUS       DATIQC010000435         6986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_205364, whole genome shotgun sequence.
ACCESSION   DATIQC010000435 DATIQC010000000
VERSION     DATIQC010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6986
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205364"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..1459
                     /locus_tag="VLM17_09375"
     CDS             113..1459
                     /locus_tag="VLM17_09375"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HSR65794.1"
                     /translation="MRRPPRLQAAACLCLLATALSGVPAAHGAPRAAVPANTAPATAT
                     ANQVAAEVRAGRKEDGRIATAVAAKLLRQPNLQKVTVEVNAGVVTLSGAAPADADRDR
                     AATLARQVEGVGDVVNDIQLDADLRTRFDAALNETRGKLVRGIAALPLIAIGLVIVLL
                     SVWLGRVLARRPASWLRARSHNPYMDGLVRRTVQAVVVLVGIVLALDLLDATTLVSAL
                     LGSAGVVGLVAGFAFKDIAENYVAGILLSLRRPFAPGDHLLIDKYDGKVVALTSRATL
                     LLTLDGNQVSLPNALVFKSVVTNYSQNPRRRFDYEITLDPSACIADAQRTALEALRTV
                     DGVLPEPGPYVLVQEMLPDRVTLKALAWIDQRRNDLKRVRSEAMRSAAAALDRVGIRR
                     AGVPAPTPASMEQAGVSPGDTSADTSVDRAIDPQLAEAQQAQVADNLLAPRPATPP"
     gene            complement(1501..1725)
                     /locus_tag="VLM17_09380"
     CDS             complement(1501..1725)
                     /locus_tag="VLM17_09380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDCCVxC domain-containing (seleno)protein"
                     /protein_id="HSR65795.1"
                     /translation="MPLLLQSTITCPHCGFAQVETMPTDACRWFHECASCHALLEPLP
                     GDCCVFCSHGSVRCPPMQQGAGCCGGGSGA"
     gene            complement(1745..3268)
                     /locus_tag="VLM17_09385"
     CDS             complement(1745..3268)
                     /locus_tag="VLM17_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HSR65796.1"
                     /translation="MTPVSIRQDDLIQSVADALQYISYYHPVDYIRALSAAYEREQSP
                     AAKDAMAQILINSRLCAEGHRPICQDTGIVTVFLKVGMQVRWDDATMGLEDMANEGVR
                     RAYNHPDNKLRASVLADPAGRRVNTRDNTPAVVNVSIVPGNTVEVIVAAKGGGSEAKS
                     KFVMLNPSDSIVDWVLKTVPTMGAGWCPPGMLGIGIGGTAEKAMLLAKEALMEPVDIQ
                     ELVARGPANRIEELRLELYDKVNALGIGAQGLGGLTTVLDVKIRDYPTHAANLPVAMI
                     PNCAATRHAHFVLDGSGPVMLDPPSLEDWPRLTYSPQNARRVDLDTVTKDDVAAWKPG
                     EVLLLNGRLLTGRDAAHKRMVDMLDRGERLPVDLSGRFIYYVGPVDPVRDEVVGPAGP
                     TTATRMDKFTEQVLAQTGLLGMVGKAERGPVAIEAIRRHRSAYLMAVGGAAYLVSKAI
                     KAARVVAFEDLGMEAIYEFTVQDMPVTVAVDSSGESVHATGPREWQARIGKIPVAVA"
     gene            complement(3405..3641)
                     /locus_tag="VLM17_09390"
     CDS             complement(3405..3641)
                     /locus_tag="VLM17_09390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65797.1"
                     /translation="MLFDVLGLIDEQSAQSIAFAIHALDPQARLTATPERGRLRIDSR
                     LGEREVADALRAAGYPAFPAPEHPAGTTCCGSCG"
     gene            3831..4544
                     /locus_tag="VLM17_09395"
     CDS             3831..4544
                     /locus_tag="VLM17_09395"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HSR65798.1"
                     /translation="MKHRHDSTSGDRQLHPGAQSSRLPHYAGEGAPRDAGLYDGLPSV
                     TNRAWGEDRADDAMTYGYRGQGGYGDFTHEHGFAESQGAHAQSGHGRGGTRFHGTERE
                     DLRSRGVEADHRGRGPRDYVRSDERITDDIVDRLTDDDTLDASEVLVMVQDGVVTLTG
                     DVPERRMKHRAEDLAAAARGVRDVRNEIRVDPGSASFGRAGEAVRSGRDQLGSGFSSS
                     ERPDPVWDNPSRDSNWPGY"
     gene            4664..5842
                     /locus_tag="VLM17_09400"
     CDS             4664..5842
                     /locus_tag="VLM17_09400"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HSR65799.1"
                     /translation="MNRCLSVLALVVAVPACARDRGAAPRPVQAATADPQAAAPATAR
                     ELRVSEVARGLEHPWAVALLPDGSFLVTERPGRLRRVSAAGRLSPPLAGLPGVWAHGQ
                     GGLLDVVLAPDYASSHRIFFSYAEPGPDGSAGTAAASAVLGADAVSDVRVIYRQEPKL
                     VGPNHFGSRIAFDGHGHVFISQGERFSYRMYAQDLSKLQGKLVRLDPDGGIPADNPFV
                     HAPNARPETWSFGHRNVQGLAIDPRTGVLWESEHGPLGGDELNRPQPGRNYGWPIASY
                     GMDYGTGRPYPETRGTQVPGTEQPVRVWKKSPGLSGMAFYTGHPRSAWNDSLFLGALA
                     DQDLIRLSLDGERITGEERLLDDVGARIRDVRVGADGNVYVLTDEADGRLLRLTPPAR
                     "
     gene            5893..6666
                     /locus_tag="VLM17_09405"
     CDS             5893..6666
                     /locus_tag="VLM17_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HSR65800.1"
                     /translation="MATQHRVSRLAILIDADNSNPDKLPDLLAEIAKYGNASVRRAYG
                     NWTSGHLGKWKAGLLMHSVQPIQQFNYTTGKNATDSAMIIDAMDLLYGGHLDGFCIVS
                     SDSDFTRLAARIREQGLTVYGFGERKTPSPFVAACDKFVYTENLGAEAAEEEGKPVEA
                     KAPRLTRDRKLDALLREAVDAASDDSGWAQLGAVGSNLVRLASDFDSRTYGFRKLRDL
                     VAAHPGYEVEDRQSADGSRNAVYIRARPAARQRNRRDAR"
     gene            6723..>6986
                     /locus_tag="VLM17_09410"
     CDS             6723..>6986
                     /locus_tag="VLM17_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HSR65801.1"
                     /translation="MNDFPASAAIDGQPTALVERDGVRYTLLGTAHVSHASVDAVRAA
                     IDTGAYDTVAVELDPQRLQSLTDPEALARLDLVKVLREGKTALF"
BASE COUNT         1009 a         2603 c         2448 g          926 t
ORIGIN      
        1 tcttcgagaa cgacctgcgc ccgaccacgc gctatacctt cgagaagtgg gcggcccggc
       61 cgtggaagga gaagttcgcg gaaaaattca tccagccgat caagtcgcag ctgtgaggcg
      121 cccgccccgc ctgcaggcgg ctgcctgcct gtgcctgctg gccaccgcgt tgtccggcgt
      181 cccggcggcg cacggcgcgc cgcgggccgc agtgccggcg aacaccgccc cggccaccgc
      241 gaccgccaac caggtcgccg ccgaagtgcg cgccggcagg aaggaggacg gccgcatcgc
      301 caccgcggtg gccgcgaagc tgctgcgcca gccgaacctg cagaaggtca ccgtcgaagt
      361 caacgcgggc gtggtgacgc tctccggcgc ggcgcccgcc gacgcggacc gcgaccgcgc
      421 ggcgacgctg gccaggcagg tcgaaggcgt cggcgacgtc gtcaacgaca tccagctcga
      481 cgccgacctg cgcacccgct tcgacgccgc cctcaacgag acgcgcggca agctggtgcg
      541 tggcatcgcc gcgctgccgc tgatcgcgat cggactggtc atcgtgctgc tgtcggtgtg
      601 gctcggccgc gtgctcgcgc ggcgcccggc cagctggctg cgtgcgcgca gccacaatcc
      661 ctacatggac gggctggtgc ggcggaccgt gcaggcggtg gtggtgctgg tcggcatcgt
      721 gctcgcgctc gacctgctcg acgccaccac cctggtcagc gccctgctcg gctcggccgg
      781 cgtggtcggc ctggtcgccg gtttcgcctt caaggacatc gccgagaact acgtcgccgg
      841 catcctgctc agcctgcgcc ggccgttcgc acccggcgac cacctgctga tcgacaagta
      901 cgacggcaag gtcgtggccc tgacctcgcg cgcgacgctg ctgctgacgc tggacggcaa
      961 ccaggtctcg ctgccgaacg cgctggtgtt caagtcggtg gtgaccaact acagccagaa
     1021 tccgcggcga cgcttcgact acgagatcac gctcgatccc tccgcctgca tcgccgacgc
     1081 ccagcgcacc gcgctggagg cgctgcgcac ggtggacggc gtccttccgg agcccggccc
     1141 ctacgtgctg gtgcaggaaa tgctgccgga ccgggtgacg ctgaaggcgc tcgcctggat
     1201 cgaccagcgc cgcaacgacc tcaagcgcgt tcgcagcgag gcgatgcgca gcgccgcggc
     1261 cgcgctcgac cgcgtcggca tccgccgcgc gggcgtgccg gcgccgaccc cggcgtcgat
     1321 ggaacaggcc ggcgtgtcgc cgggcgacac cagtgcggat acctcggtcg accgcgcgat
     1381 cgatccgcaa ctcgccgagg cgcagcaggc gcaggtggcc gacaacctgc tggcgccgcg
     1441 gcccgcgacg cccccctgat cacgccgggc gtcgcgcggc gaatccggcc accggccggg
     1501 tcaggccccg ctgccgccgc cgcagcaacc cgcgccctgc tgcatcggcg ggcaccgcac
     1561 gctgccatgg gagcaaaaga cgcagcagtc gcccggcaac ggttccagca acgcgtggca
     1621 ggacgcgcat tcgtggaacc agcgacaggc atcggtcggc atggtctcga cctgcgcgaa
     1681 gccgcaatgc gggcaggtga tcgtcgattg cagcagcagc ggcatgcgcg cgacccggtg
     1741 cgggtcaggc caccgcgacc ggaatcttcc cgatccgcgc ctgccactcg cgcggcccgg
     1801 tcgcgtgcac cgattcgccg ctggaatcga ccgccaccgt caccggcatg tcctgcacgg
     1861 tgaactcgta gatcgcctcc atgccgaggt cctcgaacgc gaccacgcgc gcggccttga
     1921 tcgccttcga cacgaggtag gccgcgccgc ccaccgccat caggtaggcg gaccggtgcc
     1981 ggcggatcgc ctcgatggcg acggggccgc gttcggcctt gccgaccatg cccagcaggc
     2041 cggtctgcgc gagcacctgt tcggtgaact tgtccatgcg cgtggcggtg gtcgggccgg
     2101 ccggcccgac gacctcgtcg cgcaccggat cgaccgggcc gacgtagtag atgaagcggc
     2161 ccgacaggtc gaccggcagc ctctcgccgc ggtcgagcat gtcgaccatg cgcttgtgcg
     2221 cggcgtcgcg accggtcagc agcctgccgt tgagcagcag cacctcgccg ggcttccacg
     2281 cggcgacgtc gtccttcgtc accgtgtcga ggtccacccg ccgcgcgttc tgcgggctgt
     2341 aggtgagcct gggccagtct tccagcgacg gcggatcgag catcaccggc ccgctgccgt
     2401 cgagcacgaa gtgcgcgtgg cgcgtggccg cgcagttcgg gatcatcgcc accggcaggt
     2461 tggccgcgtg cgtcgggtag tccctgatct tgacgtcgag cacggtggtc aggccgccga
     2521 ggccctgcgc gccgatgccg agcgcgttga ccttgtcgta cagctccagc cgcagttcct
     2581 cgatgcggtt ggcaggcccg cgggcgacga gctcctggat gtcgaccggc tccatcagcg
     2641 cttccttggc cagcagcatc gccttctcgg cggtgcctcc gatgccgatg ccgagcatgc
     2701 cgggcgggca ccagccggcg cccatcgtcg gcacggtctt cagcacccag tcgacgatcg
     2761 aatcggacgg attgagcatc acgaacttcg acttcgcctc cgagccgccg cccttggccg
     2821 cgacgatcac ctcgacggtg ttgcccggca cgatgctgac gttgaccacc gccggagtgt
     2881 tgtcgcgcgt gttgacgcgg cggccggcgg gatcggcgag cacgctggcg cgcagcttgt
     2941 tgtccgggtg gttgtaggca cggcgcacgc cctcgttggc catgtcctcc aggcccatcg
     3001 tggcgtcgtc ccagcgcacc tgcatgccga ccttgaggaa gaccgtgacg atgccggtgt
     3061 cctggcagat cggccggtgg ccctcggcgc acaggcgcga gttgatcagg atctgcgcca
     3121 tcgcgtcctt ggccgccggc gactgttcgc gctcgtacgc ggcggacaac gcgcggatgt
     3181 agtcgaccgg gtggtagtag ctgatgtact gcagcgcatc ggcgaccgac tggatcaggt
     3241 cgtcctggcg gatggaaacg ggcgtcacgc cggcggcgtg ggtcggcaaa gcgggaacgg
     3301 cactggacac ggcgggtcgc tgctggggaa agcgggcatt ttatcgccgc cgtgccggcg
     3361 ccgcccttgc ccgcgccggg cgcgggcggc ggatggccgt ggcgtcagcc gcaactgccg
     3421 cagcaggtgg tgccggcggg atgctcgggc gccgggaagg cgggatagcc ggcggcgcgc
     3481 agggcgtcgg cgacttcgcg ttcgccgagg cggctgtcga tgcgcaggcg gccgcgctcg
     3541 ggcgtggcgg tgaggcgcgc ctgcgggtcc agcgcatgga tggcgaaggc gatggactgg
     3601 gcggattgct cgtcgatcag gccgaggacg tcgaacagca tcgggatggc tccggaatcg
     3661 cggcacgcgc cgcccgcgca tcctgcggcg cccgggcggc gcgcgccttg accgaggtca
     3721 gcgccgcgcc ggcgcgtcgc cgccgttcag ccgcctttgc cgcgccggta acgccgccgc
     3781 ccctagcctg cccctgtcgg cacctgccgg cggccaacga ggaacctgcg atgaagcacc
     3841 gccacgacag caccagcgga gaccgccagc tgcaccccgg cgcgcagtcc tcgcgcctgc
     3901 cgcattacgc cggtgaaggc gccccgcgcg acgccggcct gtacgacggc ctgccttcgg
     3961 tcaccaaccg cgcctggggc gaggaccgcg ccgacgacgc gatgacctac ggctaccgcg
     4021 gccagggcgg gtatggcgac ttcacccacg agcacggctt cgccgaaagc cagggcgcgc
     4081 acgcgcagag cgggcacggt cgcggcggca cgcggttcca cgggaccgaa cgcgaagacc
     4141 tgcgctcgcg cggggtcgag gccgaccacc gcggccgggg cccgcgcgac tacgtgcgct
     4201 ccgacgaacg catcaccgac gacatcgtcg accgcctgac cgacgacgac accctcgacg
     4261 ccagcgaggt gctggtgatg gtccaggacg gcgtggtgac gctcaccggc gacgtgcccg
     4321 agcggcgcat gaagcaccgc gccgaggacc tcgcggcggc ggcgcgcggc gtgcgcgacg
     4381 tgcgcaacga gatccgcgtc gacccgggat cggcctcgtt cggccgtgcg ggcgaagcgg
     4441 tgcgttcggg gcgcgaccag ctcggcagcg gcttctccag ttcggaacgg cccgatccgg
     4501 tgtgggacaa cccgagccgg gattcgaact ggccgggcta ctgacgccga ttccggcgca
     4561 gcaccgcctg gcggacggag gccatggcgc gagcctgtcg caagggcgag cggcggccgc
     4621 cggtgtcgtc ggcaccgcac gcgatcgccg ggatactccc gccatgaacc gctgcctgtc
     4681 cgtcctcgcc ctggtcgtcg ccgttccggc ctgcgcacgg gaccgtggcg cggcgccgcg
     4741 gcccgtgcag gcggccacgg ccgacccgca agccgccgcg ccggccaccg cccgcgagct
     4801 gcgcgtcagc gaagtcgccc gcggcctcga gcacccgtgg gccgtggccc tgctcccgga
     4861 cggcagcttc ctcgtgaccg agcgcccggg tcgcctgcgc cgcgtgtccg ccgcaggccg
     4921 gctctcgcca ccgctggcgg gcctgcccgg ggtctgggcg cacggccagg gcggcctgct
     4981 cgacgtcgtc ctcgcccccg actacgccag cagccaccgc atcttcttca gctacgccga
     5041 acccgggccc gacggcagcg ccggcaccgc cgccgcgagc gccgtgctcg gcgccgatgc
     5101 ggtcagcgac gtgcgggtga tctaccggca ggaaccgaaa ctcgtcggcc ccaaccattt
     5161 cggctcgcgc atcgccttcg acgggcatgg ccacgtcttc atcagccagg gcgagcgctt
     5221 cagctaccgc atgtacgccc aggacctgtc gaagctgcag ggcaagctgg tgcggctgga
     5281 ccccgacggc ggcatcccgg cggacaaccc gttcgtgcat gcgccgaacg cgcgcccgga
     5341 gacctggagc ttcggccacc gcaacgtgca ggggctcgcc atcgatccgc gtaccggcgt
     5401 gttgtgggaa agcgagcacg gcccgctcgg cggcgacgag ctcaaccggc cgcaacccgg
     5461 gcgcaactac ggctggccga tcgccagcta cggcatggat tacggcaccg gccgcccgta
     5521 tccggaaacg cgcggcacgc aggtgcccgg taccgagcag cccgtgaggg tctggaagaa
     5581 gtcgccgggc ctgtcgggca tggcgttcta caccggccac ccgcgatcgg cctggaacga
     5641 cagcctgttc ctcggcgcgc tcgccgacca ggacctgatc cggctgagcc tcgatggcga
     5701 gcgcatcacc ggcgaggagc ggctgctcga cgacgtcggc gcgcgcatcc gcgacgtgcg
     5761 ggtcggcgcg gacggcaacg tctacgtgct caccgacgaa gcggacggca ggctgctgcg
     5821 cctcacgccg ccggcgcgct agggccttga cgcgctctgc agtatcgtcg cgccatcccg
     5881 cacggaggcg acatggccac ccagcaccgc gtttcccggc tcgcgatcct gatcgacgcc
     5941 gacaacagca accccgacaa gctgcccgac ctgctcgccg agatcgcgaa atacggcaac
     6001 gccagcgtgc gccgcgccta cggcaactgg acctccggcc acctcggcaa gtggaaggcc
     6061 gggctgctga tgcactccgt gcagccgatc cagcagttca actacaccac cggcaagaac
     6121 gccaccgaca gcgcgatgat catcgacgcg atggacctgc tctacggcgg ccatctcgat
     6181 ggcttctgca tcgtctccag cgacagcgac ttcacccgcc tggccgcgcg catccgcgag
     6241 cagggcctca ccgtctacgg cttcggcgag cgcaagacgc cctcgccctt cgtcgccgcc
     6301 tgcgacaagt tcgtctacac cgagaacctc ggcgccgagg cggcggagga ggaaggcaag
     6361 ccggtggaag ccaaggcccc gcggctcacc cgcgaccgca agctcgacgc gctgctgcgc
     6421 gaagccgtcg acgccgcctc cgacgacagc ggctgggcgc agctcggcgc ggtcggcagc
     6481 aacctcgtgc ggctggcttc cgacttcgac tcgcgcacct acggcttccg caagctgcgc
     6541 gacctcgtcg ccgcgcatcc cgggtacgag gtggaggatc gccagagcgc ggacggcagc
     6601 cgcaacgcgg tgtacatccg ggcgcggccc gccgcgcgcc agcgcaaccg gcgcgatgcg
     6661 cgatgagcgc cgcgcgcgcg ccgctccggt atcctgccgc cccgctccgc cctccccgct
     6721 cgatgaacga cttccccgct tccgccgcca tcgacggcca gccgaccgcg ctggtcgaac
     6781 gcgacggcgt gcgctacacg ctgctcggca ccgcccacgt ctcgcacgcg agcgtggacg
     6841 cggtgcgcgc ggcgatcgac accggtgcct acgacaccgt cgcggtcgaa ctcgacccgc
     6901 agcggctgca gtcgctcacc gatccggagg cgctcgcccg gctcgacctg gtcaaggtgc
     6961 tgcgcgaagg caagaccgcg ctgttc
//
LOCUS       DATIQC010000436         5423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_593833, whole genome shotgun sequence.
ACCESSION   DATIQC010000436 DATIQC010000000
VERSION     DATIQC010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5423
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_593833"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(293..1240)
                     /locus_tag="VLM17_09415"
     CDS             complement(293..1240)
                     /locus_tag="VLM17_09415"
                     /EC_number="1.8.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF016838.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0019645 - anaerobic electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DmsC/YnfH family molybdoenzyme membrane anchor
                     subunit"
                     /protein_id="HSR65802.1"
                     /translation="MHPALSVIFFTTLSGAGYGLLAWAAVAALTGQAPARPLLAAVVL
                     ALVLSTLGLVSSLFHLGKPGRAWRAFSQWRTSWLSREGVASLATAAVAVALFAALLPG
                     MLDAMALGASPQLGGVGLAVALLAVACAIGTVYCTAMIYASLKPIPAWRHPAVPIVYL
                     LFAAFTGGVLFRALLRAFDAQAGVLPVPLVSLAVLLALLKVVYWRAIDRAPLPATRGD
                     AVGLPQRRVEVFERPHTEANYLTREMAFVVARRHARLLRALALLLFAVVPVLLLLTLL
                     AGRGSPALWWLAVVAAVAGTFLERWLFFAEAKHLVSLYY"
     gene            complement(1243..1569)
                     /locus_tag="VLM17_09420"
     CDS             complement(1243..1569)
                     /locus_tag="VLM17_09420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003359266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HSR65803.1"
                     /translation="MLVTTTNSVEGRRIVEYKGLVGGDAILGANMFRDFFAGIRDILG
                     GRSGSYEKVLRKAKTEAVNDMVEQARELGANAVVGVDLDYETIEIHEGGAMLMVSVSG
                     TAVVIE"
     gene            complement(1599..2363)
                     /locus_tag="VLM17_09425"
     CDS             complement(1599..2363)
                     /locus_tag="VLM17_09425"
                     /inference="COORDINATES: protein motif:HMM:NF024644.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HSR65804.1"
                     /translation="MTDLPPPSKKKLGLVIDLDTCVGCHACAVGCKQWNSGGIAGPLT
                     DEDAYGKEPSGVWFNRVHSYELAPTDACGGGAAATTAQPAQTLHFPRSCLHCETPACV
                     TVCPTGASYKRAEDGIVLVDEDKCIGCKLCSWACPYGAREYSEVEGVMKKCTLCVDRI
                     YNENLPEAEREPACVQVCPTRARHFGDLGDPESNVSKLVAERGGVALMPELGYAPVNR
                     YLPPRPRRTGQDDDAPEPTPAGATGIAAWLGRLVKR"
     gene            complement(2360..5227)
                     /locus_tag="VLM17_09430"
     CDS             complement(2360..5227)
                     /locus_tag="VLM17_09430"
                     /inference="COORDINATES: protein motif:HMM:NF012602.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin oxidoreductase family protein"
                     /protein_id="HSR65805.1"
                     /translation="MKQPELNLSASPGDEAKATTCYMCACRCGIKVWMLDGKIRYIQG
                     NPGHPVNKGVLCAKGSAGIMQHYSPARLSKPLLRVGERGAGEFREIEWEEALQVATSW
                     LAPIRERNPDELAFFTGRDQSQALTGWWAQQFGTINYAAHGGFCSVNMAAGGLYTLGG
                     SFWEFGEPDWDHTEYLMLWGVAEDHDSNPIKLGLGKLKARGAKIVAVNPVRTGYGAIA
                     DEWIGIRPGTDGLFAFALIHELLRAQRIDLDYLVRYANAHWLVVRNPGGADDGLFARD
                     ADGRALCWDGATQAPADANARDIAPVVVGEFTLPDGRRAIPVFHLLVERYGDPRYAPD
                     AVTERCGVPADTIRRIARELAAAAFDSNLTLPIAWTDSWGREHAEMVGRPVSMHAMRG
                     ISAHSNGFHTCRALHVLQLLLGAIDTPGSFRYQPPFPKPIPPANRPGTTRKDNGALDA
                     GPLGFVHGPEDLLVDAEGQPRRIDHAYSWRYPLAAHGMMHTVIRNAWAGDPYRIDTLL
                     MFMANMSWNSAMNTTETIGWLTDKDERGEYRIPRIIYSDAYASEMVAYADLVLPDTTY
                     LERFDAISLLDRPISDADGASDAIRHPIFDPATQPGADGRPRDVRGFQSVLLDLGARL
                     GLPGMVHSDGSPTYRDYADYIVRHERMPGVGLLAGWRGEDGSAEGKGAPNPDQLQRYI
                     EHGGFWHAPVPERGRYFKMANRDYLQWAQRFGFVANDAPIVLQLYSETLQRFRLAAQG
                     HGAVQPPAEHRERVGTYFDPLPIWYEPFEHDQTAREDFPLSAITQRPMFMYHAWGSQN
                     AWLRQIATRNFLYLHPDTGAKYALADEDWIEVASHHGRITAQAKFAGNVQPDTVWSWN
                     AIGKRRGAWKLAKDAPEGTKGFLLNHLISDLTPKRDSANADPVTGQAAWFDLRVRIAK
                     ASHAGESEPQFAPLPYGEADERPLRYGVQSRNRNFRSKAEP"
     gene            complement(5244..>5423)
                     /locus_tag="VLM17_09435"
     CDS             complement(5244..>5423)
                     /locus_tag="VLM17_09435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65806.1"
                     /translation="RKYAVHHAQPRPIDVLLWVGADGRPLQVQVDSQMQGHPVQSSIR
                     YSRYDDPSITIDAPR"
BASE COUNT          815 a         1854 c         1942 g          812 t
ORIGIN      
        1 gggtgaaggc ggcgcgggcc tcggcctcct gcgcgggcac cacccacttc agcgccggct
       61 cgggacggcc cgacgccagc gcccgggcag catcctgcgc caccgggccg gacagggagt
      121 cgcaatgcgc gccggccggc accacggcgg ccagcagcag ggcgagcacg ccagcccgcc
      181 atatcgggaa tgggcggaac atcgttcgcc tcccgcgcgg ttcgccgcgc gtccggatac
      241 cggaaacact gtgagcgcgg cgcccctcaa ggcgaggtga ggcaccgaag ggtcagtagt
      301 agaggctgac caggtgcttc gcctcggcga aaaacagcca gcgctcgagg aacgtgccgg
      361 cgacggccgc gacgacggcc agccaccaca gcgcgggcga gccgcggccg gcgagcaggg
      421 tgagcagcaa caacaccggc acgaccgcga acagcagcag ggcgagcgcc cgcagcaggc
      481 gcgcatgcct gcgcgcgacg acgaaggcca tttcacgggt caggtagttg gcttcggtat
      541 gcgggcgttc gaatacctcg acccgtcgct gcggcaggcc gacggcatcg ccgcgcgtcg
      601 ccggcaacgg cgcgcggtcg atggcgcgcc aatacaccac tttcaacagc gcaagcagca
      661 cggccagcga gaccagcggc accggcagca cacccgcctg cgcgtcgaag gcacgcagca
      721 gggcacggaa gagcacgccg ccggtgaagg cggcgaacag caggtacacg atcgggacgg
      781 cggggtgccg ccacgccggg atgggcttga gcgaggcgta gatcatcgcg gtgcagtaca
      841 cggtcccgat cgcgcatgcg accgcgagca acgcgaccgc cagtccgacg ccacccagtt
      901 gcggagacgc gccgagcgcc atcgcatcga gcatgccggg caacagcgcc gcgaacagcg
      961 cgaccgcgac cgccgcggtc gccagcgagg cgacgccttc gcgcgacagc cacgacgtgc
     1021 gccattgcga gaacgcgcgc cacgcgcgcc ccggcttgcc gaggtggaac agcgaactga
     1081 ccaggccgag cgtcgacagc accagcgcga gcaccaccgc ggccagcagc gggcgcgcgg
     1141 gcgcctgtcc ggtcagcgcg gccaccgccg cccacgcgag caggccgtag ccggcgccgg
     1201 acagggtcgt gaaaaagatg accgagagag cggggtgcat ggctattcga tcaccaccgc
     1261 ggtccccgac accgacacca tcagcatcgc accgccttcg tggatctcga tggtctcgta
     1321 gtcgaggtcg acgccgacca ccgcgttcgc gcccagttcg cgcgcctgct cgaccatgtc
     1381 gttgacggct tcggtcttgg ccttgcgcag taccttctcg tagctgccgg agcggccgcc
     1441 gaggatgtcg cggatgccgg cgaagaagtc ccggaacatg ttggcgccga gaatggcgtc
     1501 gccgccgacg aggcccttgt attcgacgat acgccgccct tcgacggagt tcgtggtggt
     1561 gacgagcacc ggtgtgtctt cgctcatggt cggttccttc agcgtttgac gaggcggccc
     1621 agccaggccg cgatgccggt cgcgcccgcc ggcgtcggct cgggcgcgtc gtcgtcctgg
     1681 cccgttcgcc gcggccgcgg cgggagataa cgattcaccg gcgcgtagcc gagttcgggc
     1741 atcagcgcga cgccgccgcg ctcggcgacc agcttcgaca cgttcgactc ggggtcaccg
     1801 aggtcgccga agtggcgcgc gcgggtcggg cagacctgca cgcaggcggg ttcgcgttcg
     1861 gcttcgggca aattctcgtt gtagatgcgg tcgacgcaga gcgtgcattt cttcatcacg
     1921 ccctcgactt cgctgtactc gcgcgcaccg tagggacatg cccaactgca aagcttgcag
     1981 ccgatgcact tgtcctcgtc gaccagcacg atgccgtcct cggcgcgctt gtagctggcg
     2041 ccagtcgggc agaccgtcac gcaagccggc gtctcgcagt gcaggcagct gcgcgggaag
     2101 tgcagcgtct gtgccggctg tgccgtcgtg gcggcggcac cgccgccgca ggcgtcggtc
     2161 ggcgcgagtt cgtagctgtg cacgcggttg aaccacacgc cggatggttc cttgccgtac
     2221 gcgtcctcgt cggtcagcgg gccggcgatg ccgccgctgt tccactgctt gcagccgacc
     2281 gcgcaggcat ggcagccgac gcaggtgtcg aggtcgatga cgagcccgag cttcttcttc
     2341 gagggcggtg gcaggtcggt cacggttcgg ccttgctgcg gaagttgcgg ttgcgggact
     2401 gcacgccgta gcgcagcggt cgctcgtcgg cctcgccgta gggcagcggc gcgaactgcg
     2461 gttcgctttc gccagcgtgc gaggccttgg cgatgcgtac ccgcaggtcg aaccacgccg
     2521 cctggccggt caccgggtcg gcgttggcgg aatcgcgctt gggcgtcagg tcggaaatca
     2581 ggtggttgag caggaacccc ttcgtgcctt ccggcgcgtc cttggcgagt ttccacgcgc
     2641 cgcggcgctt gccgatcgcg ttccagctcc acaccgtgtc cggctgcacg ttgccggcga
     2701 acttcgcctg cgcggtgatc ctgccgtggt gcgaggccac ctcgatccag tcctcgtcgg
     2761 cgagtgcgta tttcgcaccg gtgtcggggt gcaggtacag gaaattccgc gtcgcgatct
     2821 gccgcagcca cgcattctgc gaaccccagg cgtggtacat gaacatcggc cgctgggtga
     2881 tcgcgctgag cggaaagtct tcgcgcgcgg tctggtcgtg ctcgaacggc tcataccaga
     2941 tcggcagcgg atcgaagtag gtgccgacgc gctcgcgatg ctccgccggc ggctgcaccg
     3001 cgccgtggcc ctgcgcggcg aggcggaacc tctgcagcgt ctccgagtac agctgcagca
     3061 cgatcggcgc gtcgttcgcg acgaaaccga agcgctgcgc ccactgcagg tagtcgcggt
     3121 tggccatctt gaagtagcgc ccgcgctccg gcaccggcgc gtgccagaag ccgccgtgtt
     3181 cgatgtagcg ctgcagctgg tcgggattcg gcgcaccctt gccctccgcg ctgccgtcct
     3241 cgccacgcca gccggcgagc aggcccacgc cgggcatgcg ctcgtggcgc acgatgtagt
     3301 cggcgtagtc gcggtacgtc ggcgagccat cgctgtgcac catgccgggc aggccgaggc
     3361 gcgcaccgag atcgagcagc accgactgga agccgcgcac gtcgcgcgga cggccatcgg
     3421 cgccgggctg cgtggccgga tcgaagatcg gatggcggat cgcgtcgctc gcgccgtccg
     3481 cgtcggaaat cggccggtcg agcagcgaga tcgcatcgaa gcgctcgagg taggtcgtgt
     3541 ccggcagcac caggtctgcg taggcgacca tctcggatgc gtaggcatcg ctgtagatga
     3601 tgcgcgggat gcggtactcg ccgcgctcgt ccttgtcggt gagccagccg atggtctcgg
     3661 tggtgttcat cgccgagttc cagctcatgt tggccatgaa catcagcagc gtgtcgatcc
     3721 ggtaaggatc gccagcccag gcattgcgga tgaccgtgtg catcatcccg tgcgcggcga
     3781 gcggatagcg ccacgaatag gcatggtcga tgcggcgcgg ctggccctcg gcgtcgacca
     3841 gcaggtcctc cggcccgtgc acgaagccga gcgggccggc gtcgagcgca ccgttgtcct
     3901 tgcgcgtcgt gccggggcgg ttggccggcg ggatgggctt cgggaacggc ggctggtagc
     3961 ggaacgaacc gggcgtgtcg atcgcaccga gcagcagctg cagcacgtgc agcgcgcggc
     4021 aggtgtggaa gccgttgctg tgcgcgctga tgccgcgcat cgcatgcatg ctgaccgggc
     4081 gcccgaccat ctcggcgtgc tcgcggcccc agctgtcggt ccaggcgatc ggcagggtga
     4141 ggttgctgtc gaacgcggcc gcggcgagtt cgcgcgcgat gcgccggatg gtgtcggcgg
     4201 ggacgccgca gcgttcggtc accgcgtcgg gcgcgtaccg gggatcgccg tagcgctcga
     4261 cgagcaggtg gaacaccggg atcgcgcggc ggccgtcggg cagggtgaac tcgcccacga
     4321 cgacgggtgc gatgtcgcgt gcgttggcgt cggccggcgc ctgcgtcgcg ccatcccagc
     4381 acagcgcgcg gccgtcggca tcccgcgcga acagcccgtc gtccgcccca cccggattgc
     4441 gcaccaccag ccagtgcgcg ttggcgtagc gcacgaggta gtcgagatcg atgcgctgcg
     4501 cgcgcagcag ttcgtggatc agcgcgaagg cgaacaggcc gtcggtgccg ggacggatgc
     4561 cgatccattc gtcggcgatc gcgccgtagc cggtgcgcac cggattcacc gcgacgatct
     4621 tcgcgccgcg cgccttcagc ttgcccaggc ccagcttgat cggattggag tcgtggtcct
     4681 cggccacgcc ccacagcatg aggtactccg tgtggtccca gtcgggctcg ccgaactccc
     4741 agaacgaacc gccgagcgtg tacagcccgc ccgcggccat gttgaccgag cagaagccgc
     4801 cgtgcgccgc gtagttgatc gtgccgaact gctgcgccca ccagccggtc agcgcctgcg
     4861 actggtcgcg gccggtgaag aaggcgagtt cgtcgggatt gcgctcgcgg atcggcgcga
     4921 gccacgaggt cgcgacctgc agcgcttcct cccactcgat ttcgcggaac tcgcccgcac
     4981 cgcgctcgcc cacgcgcagc agcggcttcg acaggcgcgc cggcgagtag tgctgcatga
     5041 tcccggccga gcccttcgcg cacagcacgc ccttgttgac cgggtgcccg gggttgccct
     5101 ggatgtaacg gatcttcccg tccagcatcc agaccttgat gccgcagcgg caggcgcaca
     5161 tgtagcaggt ggtggccttc gcctcgtcgc cgggcgacgc cgacaggttg agctccggtt
     5221 gcttcatcgg cgatggcgcg ccgtcagcgc ggcgcgtcga tggtgatcga cggatcgtcg
     5281 tagcgcgagt agcggatgct gctctgcacc gggtgtccct gcatctggct gtcgacctgg
     5341 acctgcagcg ggcggccgtc ggcgccgacc cacagcagca cgtcgatcgg gcgtggctgc
     5401 gcatggtgca cggcgtactt gcg
//
LOCUS       DATIQC010000437         2423 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_487877, whole genome shotgun sequence.
ACCESSION   DATIQC010000437 DATIQC010000000
VERSION     DATIQC010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487877"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VLM17_09440"
     CDS             <1..214
                     /locus_tag="VLM17_09440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65807.1"
                     /translation="GFISISTRLLLASLWPLALAICLDFYLVGRVLVGTGPMRWLASL
                     LFAAFLLLWFVLPRIGRLRRARGEPA"
     gene            complement(228..1601)
                     /gene="hslU"
                     /locus_tag="VLM17_09445"
     CDS             complement(228..1601)
                     /gene="hslU"
                     /locus_tag="VLM17_09445"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HSR65808.1"
                     /translation="MNRIDNTSATMTPREIVQELDRHIVGQQSAKRAVAIALRNRWRR
                     MQLDQALRDEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKD
                     VEQIVRDLADTAVKMYRAQAKARVGAQAEERAEERLLDALLPRRAPATVFGFSAEEAA
                     EEPSAADSETRAKLRRQLRSGVLDEREIELDVAMNVGVDIMAPPGMEEMGQQLKQMFS
                     QVAGNKTHRKRMTIASARPLLVEDEAGKLVNEEEVRDTAIAACEQHGIVFIDEIDKVA
                     KRAEGYGADVSREGVQRDLLPLVEGSTVSTKYGPVNTDHILFIASGAFHLAKPSDLIP
                     EMQGRFPIRVELSALSKDDFVRILTEPRAALTTQYVELLRTEGVALAFAQDAVERIAD
                     IAAQVNERQENIGARRLHTVLERLLDTLSFEAPDRDGQAVTIDRAYVDAHLGELLQDP
                     DLSRYIL"
     gene            complement(1759..2310)
                     /gene="hslV"
                     /locus_tag="VLM17_09450"
     CDS             complement(1759..2310)
                     /gene="hslV"
                     /locus_tag="VLM17_09450"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011260360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HSR65809.1"
                     /translation="MDPSQNPHVFHATTIVSVRRDGRVAVGGDGQVTLGNTVMKSNAR
                     KVRRLGRDGQVLAGFAGAAADAFTLFELFESKLEKHGQLTRAAVELAKDWRTERRLGK
                     LEALLAVADRETSLIIGGTGDVIEPEDGIIAIGSGGPYALSAARALVGHTQLDARSVV
                     EEALKIAGDVCIYTNRNVVVEEL"
BASE COUNT          289 a          834 c          881 g          419 t
ORIGIN      
        1 aggcttcatc agcatctcga cgcggctgct gctcgccagc ctctggccgc tggcgctggc
       61 gatctgcctg gacttctacc tggtcgggcg cgtcctggtc ggcaccggcc cgatgcggtg
      121 gctggcctcg ctcctgttcg ccgcgttcct gctgctgtgg ttcgtgctgc cgcgcatcgg
      181 ccggctgcgg cgcgcgcgcg gcgagccggc gtgacgcgcg aagccggtca gaggatgtag
      241 cgcgacaggt ccgggtcctg cagcagctcg ccgaggtggg cgtcgacgta ggcgcggtcg
      301 atggtcaccg cctggccgtc gcggtcgggc gcttcgaagc tgagcgtgtc gagcaggcgc
      361 tcgagcacgg tgtgcaggcg gcgcgcgccg atgttctcct ggcgctcgtt gacctgggcg
      421 gcgatgtcgg cgatgcgctc gaccgcgtcc tgcgcgaagg cgagcgcgac gccttcggtc
      481 ctgagcagct cgacgtactg ggtggtgagc gcggcgcgcg gctcggtgag gatgcgcacg
      541 aagtcgtcct tgctcagcgc cgacagctcg acgcggatcg ggaagcggcc ctgcatctcc
      601 gggatcaggt cgctgggctt ggcgaggtgg aacgcacccg acgcgatgaa caggatgtgg
      661 tcggtgttca ccggcccgta cttggtgctc acggtcgagc cttcgaccag cggcagcagg
      721 tcgcgctgca cgccctcgcg cgagacgtcg gcgccgtagc cttccgcgcg cttggcgacc
      781 ttgtcgatct cgtcgatgaa cacgatcccg tgctgctcgc aggcggcgat ggcggtgtcg
      841 cggacctcct cctcgttgac cagcttgccg gcttcgtcct cgaccagcag cggccgcgcg
      901 gacgcgatcg tcatgcgctt gcggtgggtc ttgttgccgg ccacctgcga gaacatctgc
      961 ttgagctgct ggcccatttc ctccatgccg ggcggcgcca tgatgtcgac gccgacgttc
     1021 atcgcgacgt cgagttcgat ctcgcgctcg tcgagcacgc cgctgcgcag ctggcggcgc
     1081 agcttggcgc gggtctcgct gtcggcggcg gacggttcct cggcagcctc ctcggcgctg
     1141 aagccgaaca cggtggcggg cgcccgccgc ggcagcagcg cgtcgagcag gcgttcctcg
     1201 gcgcgctcct cggcctgcgc gccgacccgc gccttggcct gcgcgcggta catcttgacc
     1261 gcggtgtcgg cgaggtcgcg gacgatctgc tcgacgtcct tgccgacgta gccgacctcg
     1321 gtgaagcgcg tcgcttccac cttcacgaag ggcgcgttgg ccagcgtcgc caggcggcgc
     1381 gcgatctcgg tcttgccgac gccggtcggg ccgatcatca ggatgttctt cggcatcacc
     1441 tcgtcgcgca gcgcctggtc gagctgcatg cgccgccagc ggttgcgcag cgcgatcgcg
     1501 accgcgcgct tggccgactg ctggccgacg atgtggcggt cgagttcctg cacgatctcg
     1561 cgcggggtca tggtggcgga ggtgttgtcg atccggttca ttggcgtgcc atcggcgcag
     1621 ttgcgttgtt gggtgggcgg cggccgggcg ctgcatcggc gggagcgtcg cgggccgcga
     1681 ccgcgctgac gcgacgtcgt cgcggcggcg acgaagcccg cggccacgac gacccccacc
     1741 gcagctccgg agaccggatc agagttcctc cacgaccacg ttgcggttgg tgtagatgca
     1801 gacgtcgccg gcgatcttca gcgcctcctc gaccacgctg cgcgcgtcga gttgcgtgtg
     1861 cccgaccagc gcgcgcgccg ccgagagcgc gtacgggccg cccgaaccga tcgcgatgat
     1921 gccgtcctcc ggttcgatca cgtcgccggt acccccgatg atcagcgagg tttcccggtc
     1981 ggccaccgcg agcagtgcct cgagcttgcc caggcgccgc tcggtgcgcc aatccttggc
     2041 caattcgacc gcggcgcggg tgagctggcc gtgtttctcc agcttcgact cgaacagttc
     2101 gaacagggtg aaggcgtcgg cggcggcacc ggcgaaaccc gcgagcacct gtccgtcgcg
     2161 accgagccgg cgcaccttgc gcgcattgga cttcatcacc gtgttgccga gggtgacctg
     2221 gccatcgcca ccgaccgcga cgcggccgtc gcggcgcacc gacacgatgg tggtggcgtg
     2281 gaagacgtgg ggattctggc tggggtccat gcgggcctcc gggcttggac cgtcgatctg
     2341 gggccgccgg aattcccgtt caagcgccgg cggtgcgcgg cggttgcacc cgcgtcattt
     2401 ccggccgcga cggcgccacg ctg
//
LOCUS       DATIQC010000438         2689 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_169466, whole genome shotgun sequence.
ACCESSION   DATIQC010000438 DATIQC010000000
VERSION     DATIQC010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169466"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..671)
                     /locus_tag="VLM17_09455"
     CDS             complement(<1..671)
                     /locus_tag="VLM17_09455"
                     /inference="COORDINATES: protein motif:HMM:NF025013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4142 domain-containing protein"
                     /protein_id="HSR65810.1"
                     /translation="MNTRINPTATLAMALLAAIALAGCKKTEDETATMPPAATTVPAP
                     VESMPPAMSTAMPPAGTTGMPPASTTVGMATGPGGTTAEATSMDATGPITDAQFYADA
                     LTGGEKEIAASKMAEKSGNAQVKALAKAIIADHTALGDKVKAAAGANAPTPAAPDLSA
                     LTGKTGNDLDKAYVDMMVADHQQDIPVFENASKNASTDTAKQLATAALPKLHKHLDMA
                     QKAQSS"
     gene            complement(702..1775)
                     /locus_tag="VLM17_09460"
     CDS             complement(702..1775)
                     /locus_tag="VLM17_09460"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HSR65811.1"
                     /translation="MRRSGSRSDRDIQSDYSGGGYDQVAGSRDYRGGGSEWRGGYGRE
                     GSYPQSRMPSDDDSRRRDFGGSDLGASYGGAGYGGYGYGAAGAGGVGYGAPGYGAGES
                     YGSASRYRGDFQRDRDWLREENEGFSGYDYERSLEARYGGADTQAREGRYGQERGMQQ
                     DWRARSSTASYGDRSYPSGESGYRTQGLGYGAQSGWQGTTSGQPGRSYRGLGPRNYTR
                     SDERIREDLNERLTDAHDIDASGLSVEVNNGVATLNGTVSERWMKHRAEDIADGCSGV
                     RDVRNMIQVTPESLRPQGAGATAGASGSGTLHGGSQTSTSGTAAQGNPSSGRATGSGT
                     TAGSSPASTSGGRPAGGSTGPNV"
     gene            1782..2054
                     /locus_tag="VLM17_09465"
     CDS             1782..2054
                     /locus_tag="VLM17_09465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65812.1"
                     /translation="MFSAFAFVPFALCAVLLRVPGAVAEIAILAVAVVHFGSPLVDPI
                     QGVMRPARPHPQHVAGGGLQVLGGGGSGVVVLHGRVLAVVTAMAFL"
     gene            2223..>2689
                     /locus_tag="VLM17_09470"
     CDS             2223..>2689
                     /locus_tag="VLM17_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Plug domain-containing protein"
                     /protein_id="HSR65813.1"
                     /translation="MRHACPRWLTAVVVLAACHARGASAQRLPATATLPGVIVVGERA
                     PPGTPATVDRVEAGAVPARAGRSASELLRQVPGVAARDRQNLAQDLQFSVRGFGARSS
                     FGVRGVQLYVDGIPATMPDGQGQLSHVPLASLRRVDVLRGPFSALYGNAAGGVV"
BASE COUNT          279 a          941 c          998 g          471 t
ORIGIN      
        1 gaggactgcg ccttctgtgc catgtcgagg tgcttgtgca gcttcggcag cgcggcggtc
       61 gccagctgct tggcggtgtc ggtgctggcg ttcttcgacg cgttctcgaa caccgggatg
      121 tcctgctggt ggtcggccac catcatgtcg acgtaggcct tgtcgagatc gttgccggtc
      181 ttgccggtca gcgccgacag gtcaggcgca gcgggcgtgg gtgcgttcgc gccggccgcg
      241 gccttgacct tgtcgccgag cgcggtgtgg tcggcgatga tcgccttcgc cagcgccttc
      301 acctgcgcgt tgccgctctt ctcggccatc ttcgacgcgg cgatctcctt ctcgccgccg
      361 gtcagtgcgt cggcatagaa ctgggcatcg gtgatcggcc cggtcgcatc catgctggtc
      421 gcttcggccg tggtgccgcc cggcccggtc gccatgccca ccgtggtcga ggcgggtggc
      481 atgcccgtcg tgccggcagg cggcatggcg gtgctcatcg ccggcggcat gctctcgacc
      541 ggtgccggta cggtggtcgc ggccggcggc atcgtggcgg tttcgtcctc ggtcttcttg
      601 caaccggcga gcgcgatggc ggcaagcaat gccatcgcga gcgtggccgt ggggttgatc
      661 ctggtattca tgcgattcgc tcctgggtgg gtgtggcgtg ctcagacgtt gggtccggtg
      721 ctgccgcccg cagggcgacc gccggaggtg gaggcaggcg aggagcccgc cgtcgtgccg
      781 ctgccggtcg ctctgccgga ggacgggttg ccctgcgccg cggtgccgga ggtggacgtc
      841 tggctgccgc catgcagcgt gccgctgccg gacgcgccgg cggtggcgcc cgcgccttgc
      901 gggcggagcg actccggcgt cacctggatc atgttgcgca cgtcgcgcac gccgctgcag
      961 ccgtcggcga tgtcctcggc gcgatgcttc atccagcgct cggacacggt gccgttcaag
     1021 gtcgcaacgc cattgttgac ctcgaccgag aggccgctgg cgtcgatgtc gtgcgcgtcg
     1081 gtcaggcgtt cgttgagatc ctcgcggatg cgctcgtccg agcgcgtgta gttgcgcgga
     1141 ccgaggcccc gatagctgcg gcccggctgg ccgctcgtgg tgccctgcca tccggactgg
     1201 gcgccgtagc caaggccctg cgtgcggtag cccgactcgc ccgaggggta gctgcggtcg
     1261 ccgtaactgg cggtactgct gcgcgcgcgc cagtcctgct gcattccacg ctcctggccg
     1321 tagcggccct cgcgcgcctg cgtgtcggcg ccgccgtagc gcgcttcgag gctgcgttcg
     1381 tagtcgtagc cgctgaagcc ctcgttctct tcgcgcagcc agtcgcggtc gcgctggaag
     1441 tcgccgcggt aacggctggc gctgccatag ctttcgcccg cgccatagcc gggcgcgccg
     1501 tagcccacgc cgccggcgcc cgcggcgcca tagccgtagc cgccgtagcc ggcgccgccg
     1561 taggaggcgc ccaggtcgga cccgccgaag tcgcgccgcc ggctgtcgtc gtccgacggc
     1621 atgcgcgact gcggatagct gccctcgcgg ccgtagccgc cgcgccactc ggaacccccg
     1681 ccgcggtaat cgcgcgatcc ggccacctgg tcgtagccgc cgccgctgta atcgctctgg
     1741 atgtcgcgat cgctgcgact gccggagcgg cgcatgcggt cgtgttctcc gcgttcgcgt
     1801 tcgtgccgtt cgccctgtgc gccgtattgc tgcgggtgcc gggtgcggtc gccgaaatcg
     1861 cgatcctcgc ggtggcggtt gttcatttcg gttctcctct cgtcgatcca atccagggcg
     1921 tgatgcgccc agcgcgaccc catccgcagc atgtcgcggg cggcggcctt caggtcctgg
     1981 gcggtggcgg cagcggggtt gtcgtcctgc acggtcgtgt cctcgcggtg gtgacggcca
     2041 tggcgttttt ataggccggt ggccgctcgg ccgcggtgaa gaaaacgctg tcaaaccgct
     2101 ggaaaacggc cttcgatcgg aggcaactcc attcaccgcg ccgggccgcg gccggggccg
     2161 gtcacgcgcc ggcgacgcgg ggcctgggca aggttgcgca ttcagcggag tggaggccac
     2221 gaatgcgaca cgcgtgcccg cgctggctca cggccgtggt cgtgctggcc gcctgccacg
     2281 cacgtggcgc gtcggcgcaa cggctcccgg cgacggccac cctgcccggc gtgatcgtgg
     2341 tcggcgagcg cgcgccgccg ggcacgccgg cgacggtcga ccgcgtcgaa gccggggcgg
     2401 tccccgcgcg cgccggccgc agcgcgtccg aactgctgcg ccaggtgccc ggcgtggccg
     2461 cgcgcgaccg ccagaacctc gcccaggacc tgcagttcag cgtgcgcggc ttcggtgcgc
     2521 gcagcagttt cggcgtgcgc ggcgtgcagc tgtacgtcga cggcatcccg gcgacgatgc
     2581 cggacggcca ggggcagttg tcgcacgtgc cgctggcctc gctgcggcgc gtcgacgtgt
     2641 tgcgcgggcc gttttccgcc ctctacggca acgccgccgg cggcgtggt
//
LOCUS       DATIQC010000439        11263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_699952, whole genome shotgun sequence.
ACCESSION   DATIQC010000439 DATIQC010000000
VERSION     DATIQC010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 11263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11263
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_699952"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            217..1167
                     /gene="xerD"
                     /locus_tag="VLM17_09475"
     CDS             217..1167
                     /gene="xerD"
                     /locus_tag="VLM17_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003466831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009009 - site-specific recombinase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HSR65814.1"
                     /translation="MPRTPAERRQRVHDLPPLRDADARAIEAFIDATWAEAGLARQTL
                     ASYRRDLEGLARWRDGAEGGLAGADRGALFDYLAWRTREGYSPRSNARLLSALRAFYA
                     HALRRGLRGDDPVALMEPPRLPRLLPKALAESEIDALLAAPDLAAPPGLRDRAMLELM
                     YACGLRVSELVDLPANAVNLRQGVLRVLGKGGKERLVPLGEEAQHWLERYLREARPQL
                     VGKATPETLFVTSRAVALTRQQFWLLVKRMAAVAGIDPARISPHGLRHSFATHLLNRG
                     ADLRALQLLLGHASLSTTQIYTLVAREQLKQLHARHHPRG"
     gene            1467..2312
                     /locus_tag="VLM17_09480"
     CDS             1467..2312
                     /locus_tag="VLM17_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017161341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HSR65815.1"
                     /translation="MRSIALALAGVVVSLAACAQSNAPATAAKPGAQANAGDLPATPG
                     SLQVAAGSAAERVRDAILKVNPQVQIDQIKPSALPGFQEAIVGGQVVYVSDDGRFLMQ
                     GTLYDIEHKRNLAEDTMSGLRRKLMASMPVADRIVFAPASPKYTVTVFTDVECGYCRK
                     LHSQIADYNRQGIAVQYVAFPRMGLGSEDYRKMVSVWCAADPRTALTDAKNDRPVPYR
                     NCKNPVAMEYTLGQKMGLTGTPMILAEDGTQLGGYLPPDQLRQALDKLAEGSKPAAST
                     AENGV"
     gene            2430..6371
                     /gene="purL"
                     /locus_tag="VLM17_09485"
                     /gene_synonym="purI"
     CDS             2430..6371
                     /gene="purL"
                     /locus_tag="VLM17_09485"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017915604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HSR65816.1"
                     /translation="MIVLEGLPALSPFRRERLETRLQAIHPGLRVTGAWFTYWIQPEA
                     GASPDPEALQRILQAHSAREPLAAGAVSRFVVPRLGTISPWASKATELLHGARLPVQR
                     VERGTRLDLAGWPSDAFAAQAVAKLLHDPMTQSLLADAGEGAALFQAPARGALEVVPL
                     ASLEEANRRLGLALADDEIEYLRARYAELGRDPHDVELMMFAQANSEHCRHKIFNASW
                     TIDGRDEGMSLFRMIKHTHAKTPEYTLSAYSDNAAVVEGFPARRFRPDPRTHEYRAEA
                     ETPSAFCIKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGGRPKAGLAGFSVSHLR
                     IPTLPQPWEHRRPLNPRMAPALDIMVEGPIGAAAFNNEFGRPNLNGYFRSFELAEGDG
                     FARAYDKPIMLAGGLGAVDRTMVAKKPLSPGDAVVVLGGPAMLIGLGGGAASSVASGK
                     SAEDLDFASVQRDNPEMERRAQEVLDRCVALGDANPILSVHDVGAGGLSNAIPELLHD
                     SNVGGVIDLDQVPADDPSLSPMQLWCNESQERYVLGLPQARVAEFAALCLRERCPFAV
                     VGTATAEQRLVVGHGATVDSVYGDATAVPLPPPAGEGAERWAIDLPMDVLFGKAPKMH
                     RDTTHPQRPRWPELSTATLDLREAGLRVLAHLTVASKSFLITIGDRTVGGLTARDQMV
                     GPWQMPVADCAITFSGFDGSCGEAMAIGERTPLALLDAAAAARMAVGEAITNLCAAPV
                     TALDRIKLSANWMAAAGFEGEDARLFDAVRAVGMELCPELDLSIPVGKDSLSMQAQWV
                     DDGIAQKSVSPVSLIVSAFAPVEDVRAQLTPLLERDVDSELWLIGLGAGKQRLGGSIL
                     AQVHPEAAGTPALPAFSGAVPDLDDPQRLRAFFELIRDARAAGLLRAYHDRSDGGAFA
                     AMCEMAFASHLGLDIALDALGEEPFRTLFNEELGAVVQIALEDRAEFADLVARHGLID
                     CAQRIGKPTTAPAVRVQHDGDTLAEWRWDELFDAWWGVTHAIQRLRDNPQGADEERAN
                     ARRFDAPGLVPKLAFDPAEDVAAPFIATGARPRVAILREQGVNSQVETAYGFDRAGFA
                     AVDVHMSDLVAGRARLQDFAGFVACGGFSYGDVLGAGRGWATSVLERPELRDMFAAFF
                     ARADTFALGVCNGCQMLSQLKPIIPGAGHWPRFLRNRSEQYEARLALLEVYESPSLFL
                     RGMAGSRIPVAVAHGEGRAAFDAATDQAAVDVALRYVDGNGRIADSYPLNPNGSPDGI
                     AGLTTRDGRVTILMPHPERTLRSANFSWAPREWPGDSPWLRMFRNARAWVG"
     gene            complement(6531..9281)
                     /gene="lanKC"
                     /locus_tag="VLM17_09490"
     CDS             complement(6531..9281)
                     /gene="lanKC"
                     /locus_tag="VLM17_09490"
                     /inference="COORDINATES: protein motif:HMM:NF038151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III lanthionine synthetase LanKC"
                     /protein_id="HSR65817.1"
                     /translation="MYLEYLLTPSDFFESVDRYQTVGNWRALAQEHLGPGWLTSRQGI
                     WLSCREPKRSLPEQGFKIHVSPDLPRAEEQLRLALAVLARHRTAFKFVADAHLLEITN
                     SKSFSRVSSGKFITAYPVDPDAFRALARDLHAALRGFHGPYILTDRPVGVATCVYYRY
                     GAFVDLKTVADGRIVQALRKPDGTLVEDPREPAFVQPDWVDDPFAEAVADAAGDDGGG
                     DDEGGDLLGGRFAITDALQFSNSGGVYAADDVHEGGPAIIKEARPCTATRRTADGFSD
                     AQDGLRAEYEALRQLEPLGVTPRPLALFEEGGHLFLAQERIAAPNWIELFSRDGISLL
                     PFRKGDCDPSGFRRVFIPAMTSAIDGLRRIHAAGYVLGDVSPNNLLVDDDTLRVTFID
                     LEAAIRSGCDAVRHLATPGFVRRGRGAGARVEASDDWYALGKCGLAAILPLQSLPDVA
                     SVSDEELVRLLVDETDLPGAVADLLLALFAADPDAALEHAARCCAPLAVPMRVDGCMP
                     PAPPLEADARQQVAAQTAAFIAAHYRGAGEATFWPVVPEGLRSSRWNLAYGAAGIAGV
                     LARHGTALPASLEQALARDDAFDGVEAAGLYTGLSGIAYWLATRGEHARSLALLDRAR
                     NSRLRLGDPCVFNGDAGIGIAALSIHRLTGAPAALGIAAECADALVRAAAVENGRTTW
                     PIAGDNGRAHWGYSRGSAGIAFFLAQFGIAGGDPATLDLALRALHHVLGNVRRNGGGL
                     DIIGAHDQDNGRAMYWANGASGIASVMLRVGLQTDDRALVAGARRLASASFCKYGVQC
                     GQFDGMAGIADGMLDAAGLTGDDEYRELHEHMARGLLLHAKVHGERQLGFAGAGNLRL
                     ACDFATGAAGVAAAMARRCGEPRPHFDFALPSAALFPLMPASDASAGSNKRHRTTRTE
                     LA"
     gene            complement(9531..>11263)
                     /locus_tag="VLM17_09495"
     CDS             complement(9531..>11263)
                     /locus_tag="VLM17_09495"
                     /inference="COORDINATES: protein motif:HMM:NF038114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HYR domain-containing protein"
                     /protein_id="HSR65818.1"
                     /translation="VDDASAYPASCTPASGSTFGLAAPPTKARTTAVSCSAQDSAGNR
                     ASGGFNVTVQDTTAPVISAPGGLGLEATSAAGAVGTFSATTRDAVDGEGNATCAPASG
                     STFGFGATTVTCTASDARNNAATPASFVVNVLDTTAPTIDQPDDVGPVEATGASGAGV
                     TFASPATHDAVDGDGTATCTPPSGSTFALGTSAVHCDATDAHGNHAEQASFNVTVVDT
                     TPPNIATHADVGPQEATSAGGAYVSYLAPATSDLVDGAGSATCLPASGGQFALGDTTV
                     TCNASDAHHNPAAPTTFTVKVRDTTAPVIAAHADVGPTEATGPLGAIVTYGAPTTADA
                     VDGDGLASCAPASGSQFALGSTTVSCSAVDVHGNVSTPTTFQVTVQDTTPPVIAFHAD
                     VTATATGNSSALVSYTPPTASDLVDGSTAVSCLPASGGSFPVGTTTVTCSTQDSRGNP
                     ASSSFKVIVSYPFSGFFRPVDNLPVVNVAKAGSAIPVKFSLGGDQGLAIFAKASPASA
                     AMTCSSGSVQDAVEETLTAGGSSLSYDPTTGQYTYVWKSDKAWAGSCRQLQVKFADGS
                     ARVANFSFTR"
BASE COUNT         1579 a         3992 c         4091 g         1601 t
ORIGIN      
        1 gggccgaaat cggtctgcac gtagacgtgg tcggcatcga tccagccgag cccgcccttg
       61 gcctcggcgc ggtagaagcc gtccttcacc cactgcttgt cgacgaggtc gaactcgcgc
      121 cagcaggcgc cagccgacca gcgccttcgg tttcacggga ggggagtgca tggcgccagc
      181 atagccggcg ccccgcgccg tcgctaagct cgcgccatgc cgcgcacgcc cgccgaacgc
      241 cgtcagcgcg tccatgacct gccgccattg cgcgacgcgg acgcgcgcgc gatcgaggcc
      301 ttcatcgatg caacctgggc ggaggccggc ctcgcccgcc agaccctggc cagctaccgg
      361 cgcgacctcg aggggctcgc gcgctggcgc gacggtgcgg aaggcggcct cgcaggcgcc
      421 gaccggggcg cgctgttcga ttacctcgcc tggcgcacgc gcgaaggcta ttcgccgcgc
      481 agcaacgcgc gcctgctgtc ggcgctgcgc gcgttctacg cgcacgcgct gcgccgcggc
      541 ctgcgcggcg acgacccggt cgcgttgatg gagccgccgc ggctgccgcg cctgctgccg
      601 aaggcgctgg ccgaaagcga gatcgacgcc ctgctcgccg cacccgacct cgccgcgccg
      661 ccgggactgc gcgaccgcgc gatgctcgaa ctgatgtacg cctgcggcct gcgggtgagc
      721 gaactggtcg acctgccggc gaacgccgtc aacctgcgcc agggcgtgct gcgcgtgctc
      781 ggcaagggcg gcaaggagcg cctggtgccg ctgggcgagg aggcccagca ctggctggag
      841 cgctacctcc gcgaagcgcg cccgcagctg gtcgggaagg cgacccccga aacgctgttc
      901 gtgacgtccc gcgcggtggc gctcacccgc cagcagttct ggctgctggt caagcgcatg
      961 gccgcggtgg ccggcatcga tccggcgcgg atcagcccgc acggcctgcg ccacagcttc
     1021 gccacccacc tgctcaatcg cggcgccgac ctgcgcgcgc tgcagctgct gctcggccac
     1081 gcctcgctgt cgaccacgca gatctacacc ctggtcgcgc gggaacagct caagcaactc
     1141 cacgcccggc accacccgag gggatgaggc aggccgcttg cgcggcaccg ccgcgcggcc
     1201 tgccgaatgc ccggccaggg tggtcgggcc gggcgagccg gagtggcggc gttgcgccct
     1261 ggatggcagg tcgacctttc gatgcggcgc ctctgccgct ttcaatcggc ggcgcgcgac
     1321 gcccgtcacc cctcgcgcga caaagctgac gaccggccca atccggcggc gcgcgcggcg
     1381 gggcgcccgc cgggcgcatg cgacaatcgg gcggaacgat cgggcgcgtg tccggtccaa
     1441 gcctttccag ctatccagga acccccatgc gctccattgc cctcgccctc gccggtgtcg
     1501 tcgtcagcct cgcggcctgc gcccagtcca acgcgccggc caccgccgcc aagccgggtg
     1561 cgcaggccaa tgctggcgac ctgccggcga cgcccggctc gctgcaggtc gcggccggct
     1621 cggccgccga gcgcgtgcgc gacgccatcc tcaaggtcaa cccgcaggtg cagatcgacc
     1681 agatcaagcc gtcggcgctg ccgggcttcc aggaggcgat cgtcggcggg caggtggtgt
     1741 acgtcagcga cgacggccgc ttcctgatgc agggcacgct gtacgacatc gagcacaagc
     1801 gcaacctcgc cgaggacacc atgtccggcc tgcgccgcaa gctgatggcg tccatgccgg
     1861 tggccgaccg catcgtgttc gcgccggcca gcccgaaata caccgtcacc gtcttcaccg
     1921 acgtcgaatg cggctactgc cgcaagctgc acagccagat cgccgactac aaccggcagg
     1981 ggatcgccgt gcagtacgtg gccttcccgc gcatgggcct gggcagcgag gactaccgga
     2041 agatggtgtc ggtctggtgt gccgccgatc cgcgcaccgc actgaccgac gccaagaacg
     2101 accgcccggt gccgtaccgc aactgcaaga acccggtggc gatggaatac acgctcggcc
     2161 agaagatggg cctgaccggc accccgatga tcctcgccga ggacggcacc cagctcggcg
     2221 gctacctccc gccggaccag ctgcgccagg cgctggacaa gctggccgaa ggcagcaagc
     2281 cggcggcgag cacggccgag aacggcgtct gacgggaagc gcgcccgcgg ccccgggctg
     2341 gccccgggcc gggcgcgtcg cggcggcagc gggcgccgcc gcttgaccgg ctacaatggc
     2401 gggcccgttg tcctacggtg ctcccggaca tgatcgtcct cgagggcctc ccggccctgt
     2461 cgccgttccg ccgcgaacgg ctcgaaacgc gcctgcaggc catccatccc ggcctgcgcg
     2521 tcaccggcgc ctggttcacc tactggatcc agccggaagc cggcgccagc cccgatcccg
     2581 aggcgctgca gcgcatcctg caggcccact ccgcgcgcga gccgctggcc gccggcgcgg
     2641 tgtcgcgctt cgtcgtgccg cgcctgggca cgatctcgcc gtgggcgagc aaggccacgg
     2701 agttgctgca cggcgcgcgc ctgccggtgc agcgggtgga gcgcgggacc cgcctggatc
     2761 tcgccggctg gcccagcgac gccttcgccg cgcaggcggt ggcgaagctg ctccacgatc
     2821 cgatgacgca gtcgctgctg gccgacgcgg gcgaaggcgc ggcgctgttc caggcgcccg
     2881 cgcgcggtgc gctcgaggtc gttccgctcg catcgctgga ggaggccaac cgccgcctcg
     2941 gcctcgccct cgccgacgac gagatcgagt acctgcgcgc gcgctacgcc gaactcggcc
     3001 gcgacccgca cgacgtcgag ctgatgatgt tcgcacaggc gaactccgag cactgccggc
     3061 acaagatctt caacgccagc tggaccatcg acgggcgcga cgagggcatg tcgctgttcc
     3121 gcatgatcaa gcacacgcac gcgaagacgc cggagtacac gctgtcggcg tacagcgaca
     3181 acgcggcggt ggtcgaaggc tttccggcgc ggcgcttccg tcccgacccg cggacgcacg
     3241 aataccgcgc cgaagccgaa acgccgagcg cgttctgcat caaggtggag acgcacaacc
     3301 acccgaccgc gatcgcgccg ttcccgggcg cgtccaccgg cgccggcggc gagatccgcg
     3361 acgagggcgc gaccggccgc ggtggccgcc cgaaggccgg cctcgccggc ttctcggtgt
     3421 cgcacctgcg catcccgacg ctgccgcagc cctgggagca tcgccgaccg ctcaacccgc
     3481 gcatggcgcc ggcgctcgac atcatggtcg aggggccgat cggcgcggcc gcgttcaaca
     3541 acgagttcgg ccggcccaac ctcaacggct atttccgcag cttcgagctg gccgaaggcg
     3601 acgggttcgc gcgcgcctac gacaagccga tcatgctcgc cggcggccta ggggcggtgg
     3661 atcgcacgat ggtggcgaag aagccgctgt cgccgggcga cgcggtggtc gtgctgggcg
     3721 gcccggcgat gctgatcggc ctggggggtg gcgcggccag ttcggtcgcc tccggcaaga
     3781 gcgccgagga cctggatttc gccagcgtgc agcgcgacaa cccggagatg gagcggcgcg
     3841 cgcaggaagt gctcgaccgc tgcgtggcgc tcggcgacgc caacccgatc ctgtcggtcc
     3901 acgacgtcgg ggccggcggc ctgtcgaatg cgattcccga actgctgcac gactcgaacg
     3961 tcggcggcgt gatcgacctc gaccaggtgc cggccgacga tccgtcgctg tcgccgatgc
     4021 agctgtggtg caacgagtcg caggaacgct acgtgctcgg cctgccgcag gcgcgcgtcg
     4081 cggaattcgc cgcgctgtgc ctgcgcgagc gctgcccgtt cgcggtggtc ggcacggcga
     4141 ccgccgagca gcggctggtg gtcggccatg gcgcgaccgt cgacagcgtt tacggcgatg
     4201 cgactgctgt tccccttccc ccgcccgcgg gtgagggggc agaacgctgg gccatcgacc
     4261 tgccgatgga cgtgctgttc ggcaaggcac cgaagatgca ccgcgacacc acgcatccgc
     4321 agcgcccgcg ctggccggag ctgtcgaccg cgacgctcga cctgcgcgag gccggcctgc
     4381 gcgtgctcgc gcaccttacc gtcgcctcga agtcgttcct gatcacgatc ggcgaccgca
     4441 ccgtcggcgg cctcaccgcg cgcgaccaga tggtcggccc gtggcagatg ccggtggccg
     4501 actgcgcgat caccttctcc ggcttcgacg gctcctgcgg cgaggcgatg gcgatcggcg
     4561 agcgcacgcc gctggcgctg ctcgatgcgg ccgccgccgc gcggatggcg gtgggcgagg
     4621 cgatcaccaa cctgtgcgcc gcgccggtga cggcgctgga ccgcatcaag ctgtccgcca
     4681 actggatggc cgcggccggc ttcgagggcg aggacgcgcg cctgttcgac gccgtgcgcg
     4741 cggtcggcat ggagctgtgc ccggaactcg acctcagcat ccccgtcggc aaggactcgc
     4801 tgtcgatgca ggcgcagtgg gtcgacgacg ggatcgcgca gaagtcggtg tcgccggtgt
     4861 cgctgatcgt gtcggcgttc gcgccggtcg aggacgtgcg cgcgcagctg acgccgctgc
     4921 tcgagcgcga cgtcgacagc gagctgtggc tgatcggcct cggtgccggc aagcagcgcc
     4981 tgggcggttc gatcctcgcc caggtgcacc cggaggccgc cggcacgccc gcgctgcccg
     5041 cgttctccgg cgccgttccc gatctcgacg acccgcagcg cctgcgtgcc ttcttcgagc
     5101 tcatccgcga cgcgcgcgcg gccggcctgc tgcgtgccta ccacgaccgg tccgacggcg
     5161 gcgcgttcgc ggcgatgtgc gagatggcgt tcgcctcgca cctcgggctc gacatcgcgc
     5221 tcgacgcgtt gggcgaggag ccgttccgca cgctgttcaa cgaagagctc ggcgcggtgg
     5281 tacagatcgc gctcgaggat cgcgccgaat tcgccgacct cgtcgcccgc cacggcctga
     5341 tcgactgcgc gcagcggatc ggcaagccga ccaccgcgcc ggccgtgcgc gtgcagcacg
     5401 acggcgacac cctcgccgag tggcgctggg acgagctgtt cgacgcctgg tggggggtga
     5461 cgcacgcgat ccagcggttg cgcgacaacc cgcagggcgc cgacgaggaa cgcgccaacg
     5521 cgcgccgctt cgacgcgcca gggctggtgc cgaagctcgc cttcgatccg gccgaggacg
     5581 tcgcggcccc gttcatcgcc accggcgcgc ggccgcgggt ggcgatcctg cgcgagcagg
     5641 gcgtgaacag ccaggtggaa accgcgtacg gtttcgaccg cgcggggttc gccgcggtcg
     5701 acgtgcacat gagcgacctc gtcgccgggc gcgcccggct gcaggatttc gccggtttcg
     5761 tcgcctgcgg cggcttcagc tacggcgacg tgctcggcgc gggccgcggc tgggcgacct
     5821 cggtgctgga gcggccggag ctgcgcgaca tgttcgcggc gttcttcgcc cgcgccgaca
     5881 ccttcgcgct gggcgtgtgc aacggctgcc agatgctctc gcagctcaag ccgatcattc
     5941 ccggcgccgg gcactggccg cgtttcctgc gcaaccgcag cgagcagtac gaggcgcgcc
     6001 tcgcgctgct cgaggtgtac gagtcgccgt cgctgttcct gcgcggcatg gccggatcgc
     6061 ggatcccggt ggcggttgcg cacggcgagg ggcgcgcggc gttcgatgcg gcgaccgacc
     6121 aggccgcggt cgacgtggcg ttgcgctatg tcgatggcaa cggccgcatc gccgacagct
     6181 atccgctcaa cccgaacggt tcgcccgacg gcatcgccgg cctgaccacg cgcgatggcc
     6241 gcgtgaccat cctcatgccg catccggaac ggacgctgcg cagcgcgaac ttcagctggg
     6301 ccccgcgcga gtggcccggc gacagcccct ggctgcggat gttccgcaac gcgcgggcgt
     6361 gggtgggcta aaagcgggcg gcgcgcgccg caagaaggcg cggcccggtc gggccgcgcc
     6421 gtacggcggt tacagctgga acgtcgggtg gcagcagacg atgatgctgc aacgcacgtg
     6481 ggtttcgttc ttctcgcggg tggccatgga ctgcagcttg agaaccttgt tcatgctagc
     6541 tccgttctgg ttgtgcgatg ccttttgttg gaaccagccg acgcatcgct tgccggcatg
     6601 agcgggaaga gggccgcgga gggcagggcg aaatcgaagt gcgggcgcgg ctcgccgcac
     6661 cggcgcgcca tggcggcggc gacaccggcc gcgccggtgg cgaaatcgca ggccaggcgc
     6721 aggttgccgg cgccggcaaa tcccaattgc cgctcgccgt ggaccttggc gtggagcagc
     6781 aggccgcgcg ccatgtgttc gtgcagttcc cggtattcgt catcgccggt caggcccgct
     6841 gcatcgagca tgccatcggc gatgccggcc atcccgtcga actgcccgca ctgcacgccg
     6901 tacttgcaga acgatgcgct ggcgagccgg cgtgcgccgg ccaccagtgc ccggtcatcg
     6961 gtctgcaacc cgacgcgcag catcacgctg gcgatgcccg aggcaccgtt ggcccagtac
     7021 atggcacggc cgttgtcctg gtcgtgcgcg ccgatgatgt cgaggccgcc gccgttgcgg
     7081 cggacattgc ccagcacgtg atgcagcgcc ctcagcgcca ggtccagcgt cgccgggtcg
     7141 ccgccggcga tcccgaactg ggccaggaag aacgcgatgc ccgccgaccc gcgggaatag
     7201 ccccagtggg cacggccgtt gtcgcccgcg atcggccagg tggtgcggcc gttctcgacg
     7261 gccgcggcgc gcaccagcgc gtcggcgcat tccgccgcga tgcccagggc ggccggagcc
     7321 cccgtcaagc ggtggatcga cagtgccgcg atgccgatgc cggcgtcgcc gttgaagacg
     7381 cagggatcgc ccagccggag ccggctgttc cgcgcccggt ccagcagcgc gagactgcgc
     7441 gcatgctcgc cacgggtggc cagccagtag gcaatgccgg acaggcccgt gtagaggccc
     7501 gcggcctcca cgccgtcgaa tgcatcgtcg cgggcaagcg cctgctccag cgatgcaggc
     7561 agcgccgtgc catggcgggc caggacgccg gcgataccgg cagcgccgta ggcgaggttc
     7621 cagcggctgc ttcgcaggcc ttccggcacg acgggccaga acgtcgcttc cccggcgccg
     7681 cgatagtgcg ccgcgatgaa ggccgcggtc tgcgcggcga cctgttggcg cgcgtcggcc
     7741 tccagcggtg gcgccggagg catgcaccca tcgacgcgca tcggaacggc gaggggcgcg
     7801 cagcagcgcg cggcgtgttc cagcgcggcg tcgggatcgg ctgcgaacag ggcgagcagc
     7861 aggtcggcca ccgccccggg aaggtcggtt tcatcgacca gcaggcgcac cagttcctcg
     7921 tcggaaaccg aggccacgtc gggcagcgac tgcagcggca ggatggccgc caatccgcat
     7981 ttgcccagcg cgtaccagtc atccgaggcc tcgacgcgcg caccggcgcc gcgtccccgc
     8041 cggacgaacc ccggagtggc caggtgccgg accgcgtcgc acccggagcg gatcgccgcc
     8101 tccaggtcga tgaacgtcac ccgcagcgtg tcgtcgtcga cgagcaggtt gttcggggaa
     8161 acgtcgccga gcacgtagcc tgccgcatgg atcctgcgca gcccgtcgat cgcgctggtc
     8221 atcgccggga tgaagacgcg ccggaacccg gagggatcgc aatcgccctt gcgaaacggc
     8281 agcaacgaga tcccgtcgcg cgagaagagt tcgatccagt tgggcgcggc gatcctttcc
     8341 tgcgccagga acaggtggcc gccttcctcg aacagcgcga gcgggcgcgg cgtgacgccg
     8401 agtggctcga gctgtcgcag ggcctcgtat tcggcgcgca ggccgtcctg cgcgtcggaa
     8461 aacccgtcgg ccgtcctgcg cgtcgcggtg cacggacgcg cctccttgat gatggccggg
     8521 ccgccctcgt gcacgtcgtc ggcggcatac accccgccac tgttggagaa ctggagcgcg
     8581 tcggtgatcg cgaaacggcc gcccagcagg tcgccgccct cgtcgtcgcc gcccccgtcg
     8641 tcgccggcag cgtcggcgac ggcttcggca aacggatcgt cgacccagtc gggctggacg
     8701 aacgcgggct cgcggggatc ctcgaccagc gttccgtcgg gcttccgcag ggcctgcacg
     8761 atgcggccgt cggccacggt cttcaggtcg acgaaggcgc cgtagcggta gtacacgcac
     8821 gtcgcgacgc ccaccggccg gtcggtgagg atgtagggac cgtggaagcc gcgcagcgca
     8881 gcatgcaggt ccctggcaag cgcgcggaaa gcgtcaggat cgaccgggta ggcggtgatg
     8941 aatttcccgg agctgacgcg cgaaaaactc ttggagttgg tgatctcgag caggtgcgcg
     9001 tcggcgacga acttgaatgc cgttcgatgc cgcgccagca ccgcgagcgc gagccggagc
     9061 tgctcctcgg cgcgcggaag gtcgggagac acgtggatct tgaatccctg ctccggcagc
     9121 gagcgcttcg gttccctgca cgacagccag atgccctgcc ggctggtcag ccacccgggt
     9181 cccaggtgct cctgggcgag tgcgcgccaa ttcccgacgg tctggtagcg gtcgacggac
     9241 tcgaagaagt ccgagggagt gagcaggtat tcgaggtaca tccatgttcc atgcagggtc
     9301 gatcgacgat cgtgcgtggc gattcatcca tgaatcgatg gccgaatatt tcacagggat
     9361 ttgattattg caacccggcg cgctccgtct ccaacgaggg catttcgctc cggtaaacca
     9421 cgcgcacgcg cgcgcgattt ctgcgagcgc gatgcggacg tggaggatgc ggatgcaaag
     9481 aaaaaacccg gcttgcgccg ggctttttct tcatgcggca gggcggcaag tcagcgggtg
     9541 aagctgaaat tcgccaccct ggccgaacca tcggcgaact tcacctgcag ctggcggcag
     9601 ctgccggccc aggccttgtc gctcttccat acgtaggtgt actggccggt ggtcgggtcg
     9661 tagctgaggc tgctgccgcc ggccgtgagc gtctcctcga ccgcgtcctg caccgaaccg
     9721 ctgctgcagg tcatcgcagc ggaggccggc gaggccttgg cgaagatcgc caggccctgg
     9781 tcgccgccga ggctgaactt caccgggatc gcgctgcccg ccttggccac gttcaccacc
     9841 ggcaggttgt cgaccgggcg gaagaagccg ctgaagggat agctgacgat caccttgaag
     9901 ctgctgctgg caggattgcc gcggctgtcc tgcgtgctgc aggtcaccgt cgtggtgccg
     9961 accgggaaac tgccgcccga cgccggcagg cagctgactg ccgtgctgcc atcgacgagg
    10021 tcgctggcgg tcggcggcgt gtagctcacc agcgcgctcg agttgccggt cgcggtcgcg
    10081 gtgacatccg cgtggaaggc gatcaccggc ggcgtggtgt cctgcaccgt gacctggaac
    10141 gtcgtcggcg tggagacgtt gccgtgcacg tcgaccgcgc tgcaggacac cgtcgtcgaa
    10201 cccaacgcga actgcgagcc cgacgccggc gcgcagctgg ccaggccgtc gccgtcgacc
    10261 gcgtcggccg tcgtcggcgc gccgtaggtg acgatggcgc ccagcgggcc ggtcgcctcc
    10321 gtcgggccga cgtccgcgtg ggcggcaatc accggtgcgg tggtgtcgcg caccttgacg
    10381 gtgaacgtgg tcggcgccgc gggattgtgg tgcgcgtcgc tggcgttgca ggtcaccgtc
    10441 gtgtcgccga gcgcgaactg gccgccggag gcgggcaggc aggtcgcact gccggcgccg
    10501 tcgacgaggt cgctggtggc cggcgcgagg tagctgacgt acgcgccgcc agcgctggtg
    10561 gcttcctgcg ggccgacgtc ggcgtgggtg gcgatgttcg gcggggtggt gtcgaccacg
    10621 gtgacgttga agctggcctg ctccgcgtgg ttgccgtggg cgtcggtggc gtcgcagtgc
    10681 acggcgctgg tgcccagcgc gaaggtgctg ccggagggcg gggtgcaggt cgcggtgccg
    10741 tcgccgtcga ccgcgtcgtg ggtggccggg ctggcgaagg tgacgccggc gccgctcgcg
    10801 ccggtggcct cgaccgggcc gacgtcgtcc ggctggtcga tggtcggcgc ggtggtgtcg
    10861 agcacgttga cgacgaagct ggcaggcgtg gcggcgttgt tgcgtgcgtc gctggcggtg
    10921 caggtcaccg tggtcgcgcc gaacccgaag gtgctgcccg acgccggggc gcacgtcgca
    10981 ttgccttcgc cgtcgacggc atcccgggtg gtcgcgctga aggtgcccac ggcgcccgcg
    11041 gcgctggtgg cctcgaggcc caggccgccg ggggcgctga tcaccggcgc ggtggtgtcc
    11101 tgcacggtga cgttgaaccc gccgctggcg cggttgccgg ccgagtcctg cgcgctgcag
    11161 ctgacggccg tcgtcctggc cttcgtcggc ggggcggcga ggccgaacgt gctgcccgac
    11221 gccggcgtgc agctggcggg atacgcgctc gcatcgtcga ccg
//
LOCUS       DATIQC010000440         6422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_488112, whole genome shotgun sequence.
ACCESSION   DATIQC010000440 DATIQC010000000
VERSION     DATIQC010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6422
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488112"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1010)
                     /locus_tag="VLM17_09500"
     CDS             complement(<1..1010)
                     /locus_tag="VLM17_09500"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HSR65819.1"
                     /translation="MDAERWQRLSPLLDAMFELDEDTRRRSLHLLREEDPELASELEA
                     LMALEGERDDFLAEPLVAPLPGVRPGSIVGPYRLERMLGEGGMGQVWLATRADGLYER
                     RVALKLLRPGLADPKLRLRFNRERQILARLAHPHIARLLDAGFSSDSQPYLALEYIEG
                     EPITDWCRRHDVPLDTRLRLFLQTCDAVSHAHANLIVHRDLKPSNILVTPLEEVRLLD
                     FGIAKLLDNPELAPEQTRTGLRAFTLHYAAPEQIRGEPVTTMTDVYSLGVVLYELLTE
                     RKPYRLKRNSDAAWEEAILGSDPLRPSVAVQRAEDEVTDAHAQRRLARALAGDLDNIV
                     LKA"
     gene            complement(1056..1619)
                     /locus_tag="VLM17_09505"
     CDS             complement(1056..1619)
                     /locus_tag="VLM17_09505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF-type sigma factor"
                     /protein_id="HSR65820.1"
                     /translation="MADTADITGWLDAARGGDRGALDRVLATLYQELHAMARRQLAGQ
                     HGQTLDATALVHEAYLRLVGRHAAQFDDRAHFFAYAASAMRSVVVDYARQRLAQKRGG
                     DLHRVTELPEEVEGGLRLDEEMLGLDTALTRLEAVDGRLAQVVELRYFAGLSELEIAS
                     LLKRSERSIRRDWQKARLFLLASLQER"
     gene            complement(1722..2576)
                     /gene="mutM"
                     /locus_tag="VLM17_09510"
     CDS             complement(1722..2576)
                     /gene="mutM"
                     /locus_tag="VLM17_09510"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012509626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HSR65821.1"
                     /translation="MPELPEVETTRRGLAPHVEGRRVTGVVLRRPDLRWPIPDEVREL
                     LPGQRIEAVRRRAKYLLLDTAAGSALLHLGMSGSLRVLPAGTPVAAHDHVDIALDAPG
                     GRRGRVLRFNDPRRFGCLLWQPPGTVHPLLQGLGPEPLPDAGGLASTGPAFDGDYLFA
                     RSRGRKAPVKTFLMDQAVVVGVGNIYAAEALFAAGISPLRPAGRVSRERYRGLAGEVQ
                     RILAHAIERGGTTLRDFLAPDGAPGYFEQELAAYGRGGEPCPRCGRPLKQAAIGQRTT
                     AWCPHCQR"
     gene            2736..3944
                     /locus_tag="VLM17_09515"
     CDS             2736..3944
                     /locus_tag="VLM17_09515"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HSR65822.1"
                     /translation="MHVFLDFLAGGLLQVGWVTLLVYFLVATQLTIFSVTLYLHRSQA
                     HRGVDFHPVVAHFFRFWTWLTTSMVTREWVAIHRKHHAKCETEEDPHSPMHKGIRMVF
                     WRGVELYREARWQREDIEKYGKGCPDDWIERHLYTPHATMGPTLLLLASFALFGFWGV
                     AIWALQMAWIPFWAAGVVNGLGHWWGYRNFETDDTATNLTPWAVWIGGEELHNNHHAF
                     PSSAKFALRRFEFDIGWATIRGLQALRLARVLRVAPTLDVRPNISVPDADTLKALLAV
                     RFQAMTDFQREVLKPALREEAATTTGGRLRALLPRKLRRGLADDGRWLKPDARQQLQA
                     WIAQRPRIRALVEHRARLSAVLESRSHNAAETLHALQAWCHEAEASGIRALQEFSARL
                     KGYSLRAARA"
     gene            4049..4354
                     /locus_tag="VLM17_09520"
     CDS             4049..4354
                     /locus_tag="VLM17_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65823.1"
                     /translation="MACLATVAAAQVPDSASYLSRMDADGDGRIELVEYQDWLSYAFD
                     RMDRDHDGVLAPAEQPGGRGAPLVRAAYRARLAAAFRRQDRDGDGVLDARELAAPPR"
     gene            4416..6371
                     /gene="acs"
                     /locus_tag="VLM17_09525"
     CDS             4416..6371
                     /gene="acs"
                     /locus_tag="VLM17_09525"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019661756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HSR65824.1"
                     /translation="MPQPERYPIPPDFAAHARIRADDYRRLYARSVADPDAFWAEVAR
                     RLDWERAPTQVRDVSFDPGDFRIRWYADGELNASVNCLDRHLATRGDKTALLFEPDDP
                     AQPAQRITYRELHARVCRLGNALRALGVRKGDRVTIYLPMIPEAVVAMLACARIGAIH
                     SVVFGGFAPQSIADRIADCGSRLVITADEGQRGGRRIPLKANVDAALALPGTNSVETV
                     LVVRHTHAAVPMQMPRDRWVDAVVDDQPADCEPERMNAEDPLFILYTSGSTGKPKGVL
                     HTTGGYLVFASFTHEAVFDLREDDVWWCTADVGWVTGHSYIVYGPLANGATALVFEGV
                     PNHPDASRFWQVVDKHQVTLFYTAPTAIRALMREGDAPVKATSRASLRLLGTVGEPIN
                     PEAWRWYHDVVGDARCPVVDTWWQTETGGILISPLPGAIEAKPGSATLPFFGVRPAIV
                     DAAGNTLEGETEGNLVLDDSWPGQMRTVYGDHQRFIDTYFKTYPGRYFTGDGCRRDAD
                     GYYWITGRVDDVINVSGHRIGTAEVESALVAHPKVAEAAVVGFPHDLKGQGIYAYVTL
                     VAGEVQTDDLHRELIAWVRTEIGPIATPDHLQWAPSLPKTRSGKIMRRILRKIAEDAP
                     EQLGDTSTLADPSVVESLVRERRGAKP"
BASE COUNT          914 a         2361 c         2251 g          896 t
ORIGIN      
        1 gccttcagca cgatgttgtc gaggtcgccg gccagcgcgc gcgcgaggcg gcgctgcgcg
       61 tgcgcgtcgg tcacctcgtc ctcggcgcgc tgcaccgcca ccgacgggcg cagcggatcg
      121 ctgccgagga tcgcctcctc ccacgccgcg tcgctgttgc gcttgagccg gtagggcttg
      181 cgctcggtga gcagctcgta gagcacgacg ccgagcgaat acacgtcggt catcgtcgtc
      241 accggctcgc cgcggatctg ctcgggcgcg gcgtagtgca gggtgaacgc gcgcaggccg
      301 gtgcgcgtct gctcgggggc gagttccggg ttgtcgagca gcttggcgat gccgaagtcg
      361 agcagccgca cttcctccag cggcgtgacc aggatgttgg acggcttgag gtcgcggtgg
      421 acgatcaggt tcgcgtgcgc gtggctgacc gcgtcgcagg tctgcaggaa caggcgcagg
      481 cgcgtgtcca gcggcacgtc gtggcgacgg caccagtcgg tgatcggttc gccctcgatg
      541 tactcgagcg cgaggtaggg ctggctgtcg ctgctgaagc cggcatcgag caggcgcgcg
      601 atgtgcggat gggcgagccg ggcgaggatc tgccgctcgc ggttgaagcg aaggcgaagc
      661 ttggggtcgg ccaggccggg ccgcagcagc ttgagcgcga cgcggcgttc gtacaggccg
      721 tcggcgcggg tggccagcca gacctggccc atgccgcctt cgccgagcat gcgttccagc
      781 cggtacgggc cgacgatgct gcccggccgc acgcccggca gtggcgcgac cagcggctcg
      841 gcgaggaaat cgtcgcgctc gccttccagc gccatcagcg cctcgagttc gctggcgagc
      901 tcgggatcct cctcgcgcag caggtgcagg ctgcggcggc gggtgtcctc gtccagctcg
      961 aacatcgcgt cgagcagcgg cgacaggcgt tgccagcgtt cggcgtccat caggaacgcc
     1021 ggttccccga ctgccacccc gcgcgcatgg cggcgctacc tttcctgcag cgacgccagc
     1081 aggaacaagc gcgccttctg ccagtcgcgg cggatgctgc gctcggaacg cttgagcagg
     1141 gaggcgatct ccagctccga caggccggcg aaatagcgca gttcgaccac ctgggcgagg
     1201 cggccgtcga ccgcctccag ccgggtcagc gcggtgtcca ggccgagcat ctcctcgtcc
     1261 aggcgcaggc cgccttcgac ctcttccggc agttcggtga cccggtgcag gtccccaccg
     1321 cgcttctggg cgaggcgctg gcgggcgtag tcgaccacca cgctgcgcat ggccgaggcg
     1381 gcgtaggcga agaaatgggc gcggtcgtcg aactgcgccg cgtgccggcc gaccaggcgc
     1441 aggtaggcct cgtgcaccag cgcggtcgca tccagggtct ggccatgctg gccggccagc
     1501 tggcgccggg ccatggcgtg cagctcctgg tacagcgtgg cgagcacgcg gtcgagcgca
     1561 ccgcgatccc cgccgcgcgc cgcgtccaac cacccggtga tgtcggccgt gtcagccatc
     1621 gacaccttca tccttgcggg gcgggtcact ataacctgaa cagaccggaa aagtgcgaca
     1681 acggacacat ttttcctgac cggttcacgg cccgtccgcc gtcagcgctg gcagtgcggg
     1741 caccaggccg tggtgcgctg gccgatcgcc gcctgcttca gcggccgccc gcagcgcggg
     1801 cagggttcgc cgccgcggcc gtacgccgcc agctcctgct cgaagtagcc gggcgccccg
     1861 tccggggcga ggaagtcgcg cagggtggtg ccgccgcgtt cgatggcgtg ggcgaggatg
     1921 cgttgcacct ccccggcgag cccccggtag cgctcgcgcg agacccggcc ggcggggcgc
     1981 agcggcgaga tgccggcggc gaacagcgcc tcggccgcat agatgttgcc gaccccgacc
     2041 accaccgcct ggtccatcag gaaggtcttg accggcgcct tgcggccgcg gctgcgggcg
     2101 aacagataat cgccgtcgaa cgccggccct gtcgaagcga ggccaccggc gtccggcagc
     2161 ggctccgggc cgaggccctg cagcagtgga tggacggtcc ccggcggttg ccagagcagg
     2221 cagccgaagc ggcgcgggtc attgaagcgc agcacgcggc cgcgcctgcc gccgggcgcg
     2281 tcgagcgcga tgtccacgtg gtcatgcgcg gccaccggcg ttccggccgg cagcacgcgc
     2341 aggctgcccg acatgcccag gtgcaggagc gcgctgccgg cggcggtatc gagcaacagg
     2401 tacttggcac gccggcgcac cgcctcgatg cgctgccccg gcagcagttc gcgcacctcg
     2461 tccgggatcg gccagcgcag gtccggccgg cgcaggacga cgccggtcac gcgtcgccct
     2521 tcgacatgcg gggcgaggcc gcggcgggtc gtctcgactt cgggcagctc gggcatgcga
     2581 ccagcttagc ggcgcgagcc ggcgcaccgt cacgatcgtg cgcgggggct gaacacgggt
     2641 aggaaaatca atgccatacc ggcgcgcacg gagcgcgaag ctggcatgat ccccctgggc
     2701 cggtgctccg gcccatccct gttccggagt ccttgatgca cgttttcctc gacttcctcg
     2761 ccggtggtct gctgcaggtc ggctgggtca ccctgctggt ctatttcctg gtcgccaccc
     2821 agctcaccat cttctcggtg acgttgtacc tgcaccgcag ccaggcccat cgcggcgtgg
     2881 acttccatcc ggtggtggcg cacttcttcc gcttctggac gtggctgacg acctcgatgg
     2941 tcacccgcga gtgggtggcg atccatcgca agcaccacgc caagtgcgag accgaggaag
     3001 acccgcacag cccgatgcac aagggcatca ggatggtgtt ctggcgcggc gtcgagctgt
     3061 accgcgaagc ccgctggcag cgcgaggaca tcgagaagta cggcaagggc tgccccgacg
     3121 actggatcga gcgccacctg tacaccccgc acgcgacgat gggcccgacc ctgctcctgc
     3181 tcgccagctt cgccctgttc ggcttctggg gcgtggcgat ctgggcgctg cagatggcgt
     3241 ggatcccgtt ctgggccgcc ggcgtggtca acggcctcgg ccactggtgg ggctaccgca
     3301 acttcgagac cgacgacacc gcgaccaacc tgacgccgtg ggcggtctgg atcggcggcg
     3361 aggagctgca caacaaccac cacgcattcc cgagctcggc gaagttcgcg ctgcgccggt
     3421 tcgagttcga catcggctgg gcgaccatcc gcggcctgca ggcgctgcgc ctggccaggg
     3481 tgctgcgcgt cgcgccgacc ctggacgtgc gcccgaacat cagcgtgccc gacgccgaca
     3541 ccctcaaggc gctgctcgcg gtgcgcttcc aggcgatgac cgacttccag cgcgaggtgc
     3601 tcaagccggc gctgcgcgag gaagcggcga ccaccaccgg cggccgcctg cgcgcgctgt
     3661 tgccgcgcaa gctgcgccgc ggcctggcgg acgacgggcg ctggctcaag cccgacgcgc
     3721 gccagcagtt gcaggcctgg atcgcccagc gtccgcgcat ccgcgcgctg gtcgagcacc
     3781 gggcgcggct gtcggccgtt ctcgagtcgc gcagccacaa tgccgccgaa acgctgcacg
     3841 cgctgcaggc ctggtgccac gaggccgagg ccagcggcat ccgcgcgctg caggagttct
     3901 ccgcgcggct gaagggctac tcgctgcggg ccgcccgcgc ctgacccggg tgcgcaccgc
     3961 gcgcgcccat cgaagcccgg ccggcgacgg ccgggcttcg ttttttgcga cccgcctcgt
     4021 tgcgctacgc acggccgcgg cgcttgcgct ggcgtgcctc gccaccgtcg ccgccgcgca
     4081 ggtgcccgac agcgcctcct acctgtcgcg catggatgcc gacggcgacg gccggatcga
     4141 gctcgtcgaa taccaggact ggctcagcta cgccttcgac cgcatggacc gcgaccacga
     4201 cggcgtgctc gcgccggccg aacagcccgg cggccgcggc gcgccgctcg tccgcgccgc
     4261 ctaccgcgcc cgcctcgccg ccgccttccg ccgccaggac cgcgacggcg acggcgtcct
     4321 cgacgcccgc gagctggccg cgccaccgcg ctgagcgcat gccggagcgc aggcgctgag
     4381 gcagactgtc aggcccgcgt ccgccggaga ccgccatgcc tcagcccgag cgctatccga
     4441 tcccgcccga cttcgccgcc cacgcgcgca tccgggccga cgactaccgg cggctgtacg
     4501 cgcggtccgt cgccgatccc gatgcgttct gggcggaggt cgcccgacgc ctggactggg
     4561 agcgcgcgcc gacccaggtc cgcgacgtca gcttcgaccc cggcgacttc cgcatccgct
     4621 ggtatgccga cggcgaactc aacgccagcg tcaactgcct cgaccgccac ctcgccacgc
     4681 gcggcgacaa gacggcgctg ctgttcgagc ccgacgaccc ggcgcagccg gcgcagcgca
     4741 tcacctatcg cgagctgcac gcgcgcgtgt gccggctcgg caacgcgctg cgcgcgctcg
     4801 gcgtacgcaa gggcgaccgc gtcaccatct acctgccgat gatcccggaa gccgtcgtcg
     4861 cgatgctcgc ctgcgcgcgc atcggcgcga tccactcggt ggtgttcggc ggtttcgccc
     4921 cgcagtcgat cgccgaccgc atcgccgact gcggcagcag gctggtcatc accgccgacg
     4981 agggccagcg cggcggcagg cgcatcccgc tcaaggccaa cgtcgacgcc gcgctcgcgc
     5041 tgcccggcac gaactcggtc gaaacggtgc tggtggtgcg ccacacgcac gccgcggtgc
     5101 cgatgcagat gccgcgcgac cgctgggtcg acgccgtcgt cgacgaccag ccggcggact
     5161 gcgaacccga gcgcatgaac gccgaggatc cgctgttcat cctctacacc tccggcagta
     5221 ccggcaagcc gaagggcgtg ctgcacacca ccggcggcta cctcgtgttc gccagcttca
     5281 cccacgaagc cgtgttcgac ctgcgcgagg acgacgtgtg gtggtgcacc gccgacgtcg
     5341 gctgggtcac cggccacagc tacatcgtgt acgggccgct ggccaacggc gccaccgcgc
     5401 tggtgttcga gggcgtgccc aaccatccgg acgcctcgcg cttctggcag gtggtcgaca
     5461 agcaccaggt cacgctgttc tacaccgcgc cgacggcgat ccgcgcgctg atgcgcgagg
     5521 gcgacgcgcc ggtgaaggcg acctcgcgcg cctcgctgcg cctgctcggc acggtcggcg
     5581 aaccgatcaa cccggaagcc tggcgctggt accacgacgt cgtcggcgac gcgcgctgcc
     5641 cggtcgtcga cacctggtgg cagaccgaga ccggcggcat cctgatctcg ccgctgccgg
     5701 gcgcgatcga ggccaagccc ggctcggcga cgctgccgtt cttcggcgtg cgtccggcca
     5761 tcgtcgacgc cgccggcaac acgctcgagg gcgagaccga aggcaacctc gtgctggacg
     5821 attcctggcc ggggcagatg cgcacggtgt acggcgacca ccagcggttc atcgacacct
     5881 acttcaagac ctatcccggc cgctacttca ccggcgacgg ttgccgccgc gacgccgacg
     5941 gctactactg gatcaccggc cgcgtcgacg acgtcatcaa cgtcagcggc caccgcatcg
     6001 gcaccgccga agtcgaaagc gcgctggtcg cgcatccgaa ggtcgccgag gccgcggtgg
     6061 tcggcttccc gcacgacctc aaggggcagg gcatctatgc ctacgtgacg ctggtcgccg
     6121 gtgaagtgca gacggacgac ctgcaccgcg aactcatcgc ctgggtgcgc accgagatcg
     6181 gcccgatcgc cacccccgac cacctgcagt gggcgccgtc gctgccgaag acgcgcagcg
     6241 gcaagatcat gcgccgcatc ctgcgcaaga tcgccgagga cgcgcccgag cagctcggcg
     6301 acacctccac gcttgccgat ccgtcggtgg tcgagtcgct ggtgcgcgag cgccgcgggg
     6361 ccaagccttg agcgacgccg cctcgcgcac ggcgcgcgtg cagctgccga tcaacctcgc
     6421 ct
//
LOCUS       DATIQC010000441         2471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_664857, whole genome shotgun sequence.
ACCESSION   DATIQC010000441 DATIQC010000000
VERSION     DATIQC010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_664857"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VLM17_09530"
     CDS             <1..636
                     /locus_tag="VLM17_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008210304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative oxidase"
                     /protein_id="HSR65825.1"
                     /translation="SVELDTHRATRDWSDRVALGITRSLRFLADTFFAKRYGNRAIVL
                     ETVAAVPGLVGAALIHLRCLRWMKHDHGWIRTLMEEAENERMHLMTFIEIARPNPLER
                     ALVLAAQAGFFTFFLALYLLSPRTAHRLVGYFEEQAVISYSQYLQEIDAGRVENVPAP
                     KIARDYWSLPADARLREVVLAVRADEAGHRDVNHGFSNQLRPQAATMRVAG"
     gene            804..1052
                     /locus_tag="VLM17_09535"
     CDS             804..1052
                     /locus_tag="VLM17_09535"
                     /inference="COORDINATES: protein motif:HMM:NF045445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65826.1"
                     /translation="MPVPQLQSFPGWCAALHCGVLLVVSGAWAGAGDALFRLQARGFR
                     LDRARCDFALYLLPGGYKLAIVLFCLVPWLALRLVRPT"
     gene            1067..1489
                     /locus_tag="VLM17_09540"
     CDS             1067..1489
                     /locus_tag="VLM17_09540"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HSR65827.1"
                     /translation="MKILVAVDGSPVSRRAVQHVVKLSKQLAAPAEVTLFNADTPLMQ
                     SVAIRLGAENVRRYHADNGQHATREARAALKRARLPFRELLVVADAAEAIVREAKAGR
                     HDLVVMGTHGRGALEGLLLGSVARKVIAQSSVPVTVVR"
     gene            1516..>2471
                     /locus_tag="VLM17_09545"
     CDS             1516..>2471
                     /locus_tag="VLM17_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005413381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HSR65828.1"
                     /translation="MALSLQFLGANATVTGSRTLVEADGARVLVDCGLFQGYKPLRLR
                     NWAEFPVDAGSLDAIVLTHAHLDHSGYLPRLARLGFRGRIWCTPGTAALARILLPDSA
                     RLLEEEAGYANRRGSSRHHPAEPLYDERDAQQALRLLAEVDFHREFEPAAGVRAHFRR
                     QGHILGAAAATLEHAGERIVLSGDVGRPHDPVMSAPEPPDACDWLVVEATYGNRRHAS
                     VDVEAELAAALGPVLARGGVAVIPAFAVGRAQALLHAIARLQADGRVPAAPVYLNSPM
                     AADVTALYARFPAEHRLDSAALAALSRNTHVVNSVEESKALNR"
BASE COUNT          321 a          965 c          843 g          342 t
ORIGIN      
        1 agcgtcgagc tggacacgca ccgcgccacc cgcgactggt ccgaccgcgt cgcgctcggc
       61 atcacccgca gcctgcgctt cctcgccgac acgttctttg ccaagcgcta cggcaaccgc
      121 gcgatcgtgc tggagaccgt cgccgcggtg ccgggcctgg tcggcgccgc gctgatccac
      181 ctgcgctgcc tgcgctggat gaagcacgac cacggctgga tccgcacgct gatggaggaa
      241 gccgagaacg agcgcatgca cctgatgacc ttcatcgaga tcgcgcgccc caacccgctc
      301 gagcgtgcgc tggtgctggc cgcgcaggcc ggcttcttca ccttcttcct cgccctgtac
      361 ctgctcagcc cgcgcaccgc gcaccggctg gtcggctact tcgaggagca ggcggtgatc
      421 agctacagcc agtacctgca ggagatcgac gctggccgag tggagaacgt gccggcgccg
      481 aagatcgccc gcgactactg gagcctgccc gccgacgccc gcctgcgcga ggtggtgctg
      541 gccgtgcgcg ccgacgaggc cggccaccgc gacgtcaacc acggcttctc caaccagctg
      601 cgcccgcagg cggccaccat gcgcgtcgcc ggctgatccc ggtcgacgga accgagcgcc
      661 ggcccctcgc gggccgacgc tttttttgca tccgccacgg cgcccggcga cggggccccg
      721 gcctcccggc ccggttgacc gggatcaaac cgctcccggc gctgcgggcg catgctgtgg
      781 gccatccacg aaggagccgc gccatgccgg tgccgcagct gcagtccttc cccggctggt
      841 gcgccgcgct ccactgtggg gtgctcctcg tcgtctccgg tgcctgggcc ggcgcgggcg
      901 acgccctgtt ccgcctgcag gcgcgcgggt tccggctcga ccgggcgcgt tgcgatttcg
      961 cgctgtacct gctgccgggc ggctacaagc tggcgatcgt gctgttctgc ctggtgccgt
     1021 ggctggcgct gcggctggtg cgtccgacct gacccaagga ggtgtcatga agatcctcgt
     1081 cgccgtcgac ggcagcccgg tcagccggcg cgccgtgcag cacgtcgtca agctgtccaa
     1141 gcagctcgcc gcgcccgcgg aggtcaccct gttcaacgcc gacacgccgc tcatgcagtc
     1201 ggtcgcgatc cgcctgggcg cggagaacgt gcgccgctac cacgccgaca acggccagca
     1261 cgccacccgc gaggcgcgtg ccgcgctcaa gcgcgcgcgg ctgccgttcc gcgaactgct
     1321 cgtcgtggcc gacgcggcgg aagccatcgt gcgcgaagcc aaggccggca ggcacgacct
     1381 cgtggtgatg ggcacgcacg gccgcggcgc gctggaaggc ctgctgctgg gctcggtcgc
     1441 gcgcaaggtc atcgcgcagt ccagcgtgcc cgtcacggtc gtgcgctgaa cccacgccgg
     1501 cgcgaggagc ccgcgatggc cctgtccctg cagttcctcg gcgcgaacgc caccgtcacc
     1561 ggctcgcgca cgctggtcga agccgacggc gcgcgcgtgc tggtcgactg cggcctgttc
     1621 cagggctaca agccgctgcg cctgcgcaac tgggcggagt tcccggtcga tgccggctcg
     1681 ctcgacgcca tcgtcctcac ccacgcccac ctcgaccaca gcggttacct gccgcggctc
     1741 gcgcgcctgg gtttccgcgg ccgcatctgg tgcacgcccg gcaccgccgc gctggcgcgc
     1801 atcctgctgc cggactcggc gcgcctgctg gaggaggaag ccggctacgc caaccgcagg
     1861 ggcagttcca ggcaccaccc ggccgaaccg ctctacgacg aacgcgacgc gcagcaggcc
     1921 ctgcgcctgc tcgccgaagt cgacttccac cgggagttcg aacccgccgc cggcgtgcgc
     1981 gcgcatttcc gccgccaggg ccacatcctc ggcgcggccg cggcgacgct cgaacacgcc
     2041 ggcgagcgca tcgtcctcag cggcgacgtc ggccgtccgc acgacccggt gatgagcgcg
     2101 cccgagccgc ccgacgcctg cgactggctg gtcgtcgaag cgacctacgg caaccgccgc
     2161 catgccagcg tcgatgtcga ggccgaactc gccgccgcgc tcggcccggt gctggcgcgc
     2221 ggcggcgtgg cggtgatccc cgcgttcgcg gtgggccgcg cccaggcgct gctgcatgcg
     2281 atcgcccggc tgcaggcgga cggccgcgtc cccgccgcgc cggtctacct caacagcccg
     2341 atggcggccg acgtcaccgc gctctacgcg cgcttccccg ccgagcaccg gctcgattcc
     2401 gccgcgctgg ccgcgctgtc gcgcaacacg cacgtggtca acagcgtcga ggaatcgaag
     2461 gcgctcaacc g
//
LOCUS       DATIQC010000442         5316 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_169676, whole genome shotgun sequence.
ACCESSION   DATIQC010000442 DATIQC010000000
VERSION     DATIQC010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5316)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5316)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5316
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169676"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..716
                     /gene="ccoO"
                     /locus_tag="VLM17_09550"
     CDS             102..716
                     /gene="ccoO"
                     /locus_tag="VLM17_09550"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007805542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HSR65829.1"
                     /translation="MGIAHEKLEKNIGLLAILTAIAVSLGGLAEIVPMMHDAQAIQPL
                     PGVRPYPALQLAGRDVYVREGCYNCHSQMVRTLRFETERYGHYSMAGESVYDRPFQWG
                     SKRTGPDLARVGGRYSDDWHRVHLNNPRDVVPESNMPAFPWLANNLLDGKDVASHMKA
                     LQRLGDPYSDAEIRNAPAAVAGKTELDAVVAYLQGLGRHAPRGD"
     gene            720..878
                     /locus_tag="VLM17_09555"
     CDS             720..878
                     /locus_tag="VLM17_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcoQ/FixQ family Cbb3-type cytochrome c oxidase
                     assembly chaperone"
                     /protein_id="HSR65830.1"
                     /translation="MLSGIVTLVWMLAFVAVSVWAWRPAQRAGFDDAARLAVDDAAAP
                     ADEAEASR"
     gene            875..1807
                     /gene="ccoP"
                     /locus_tag="VLM17_09560"
     CDS             875..1807
                     /gene="ccoP"
                     /locus_tag="VLM17_09560"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
                     /protein_id="HSR65831.1"
                     /translation="MSAGWSLFVIAFTLFNLLGAAWLLWWTARRRPGDPKPEDTSHYW
                     DGDITEYNKPMPRWWINGFFLSIAFALGYLTWFGGWGGFKGVGGWSSTAQYAREKAVA
                     DKQLDETFARFAGKPIDVIARDPYARKLGQAIFANTCATCHGSTAHGAAGFPNLTDDT
                     WKWGGTPDDVLHSVQDGRDGVMPTWGKVLTGMGGPNAVDQVVAYVRTLGDPKLMDNNF
                     MAAQGKALYEGVCVACHGIDGKGNQALGAPNLADDDWLYGDSSESLHQTIAEGRHGVM
                     PAHLPILGDTRTRLVAAYVWSLSHKEPGAAAAAH"
     gene            1809..2102
                     /locus_tag="VLM17_09565"
     CDS             1809..2102
                     /locus_tag="VLM17_09565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65832.1"
                     /translation="MTDPLRPDFDHPPRPLAQRLGAILWPSFFSAGVATMVFFAFVDP
                     LQLRDMTFPDLEITREMGYTLGFFAFWAATAASSLFSWILLRPSSRFNGPRAR"
     gene            2115..3650
                     /locus_tag="VLM17_09570"
     CDS             2115..3650
                     /locus_tag="VLM17_09570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HSR65833.1"
                     /translation="MNKRIDIRLDEGDSHYVSERKVYPRDVSGRFDRLRKVAVFWLLG
                     MYYLFPWLEWNGRQAVLFDLPARKFHVFGLTFWPQDFSLLAILLIILALTLFFVTALA
                     GRLWCGYACPQTVWTECFLWMERWAEGDRARRMKLDAGPWNREKILRKGAKHVLWLVF
                     ALWTGFTFVGFFTPIGGLAQRLWPFGWNGWETFWVLFYAFATWGNAGFLREQVCKYMC
                     PYARFQSAMFDRDTLIIAYDPMRGEPRGPRQRGLKSVLERARGLLDARVAYDYVFRAT
                     RHPSAAQARLQAAGTVTLAGAGVEGAPLPKFAFEEMGDCIDCTMCVQVCPVGIDIRNG
                     LQYECIACGACIDACDEVMDKVGYPRGLIRYSTQNAIDGKPGRVARPRIFVYAAVLLL
                     LVSAWTWGVTHRSPLIADVLRDRNALYRETGAGIENGYTLKLANKTDRAQRYVVAMQA
                     PAGLQLRDPGAIVVAAGDVAAVPLTVVGNASSHGRTAIRFDVHSTDGAARDVVDSSFF
                     GPM"
     gene            3650..4162
                     /locus_tag="VLM17_09575"
     CDS             3650..4162
                     /locus_tag="VLM17_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HSR65834.1"
                     /translation="METGDDKRSAWREPMVWLLVAIPALAVLASVVLLVAAGHTSGNN
                     DLVPDKVARTGQAQVADLGPAERARALGLGAVVRVSAGGIDVLPTGGGFDRSRPLRLS
                     LVHPLEAAQDRTLALAPSALGWHADGSVDTRHDWNVRLQPADGAWRLDGRWPRGQRAM
                     FVHPAVPGAE"
     gene            4162..>5316
                     /locus_tag="VLM17_09580"
     CDS             4162..>5316
                     /locus_tag="VLM17_09580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HSR65835.1"
                     /translation="MDAAVRGEATPCFHCGDPVAAGVAVHEPLEDAARAFCCGGCAAA
                     ARWIRDARLGDYYRLRDAAGSRVDATLVDYAAWDREDVIAGHVHPCAGGREIVLLTDG
                     MHCAACAWLIDRALRCEPGVLDAGANAMTGRVRIAWDPARAPLSRVLARMAALGYRPY
                     LAAGDARERERQRERNRWLLRIGIAGLGAMQAMMFAEALYLDTAHAMPGATRDFFRWL
                     ALLVSAPVVFYSGWPFLAGMARELRARRAGMDTLVSLSVLVAFLASVVQTLRGGEHVW
                     YDAAVMFVFLLLCARMLEQRVRRLATAQVDALARARPALAVREAAGVAEQVPVAHLVA
                     GDVVRVAPGETVPADAVLLDAEGAFDEALLSGESTPLHRVAGDAVYAGSLC"
BASE COUNT          722 a         1895 c         1908 g          791 t
ORIGIN      
        1 tgggctggca catgtggaag acctggaaga tggcgtccgg cgttgccgaa catccggtca
       61 tggcacccga cgtcgctgaa gccaaggcct gaggacgaga catgggaatc gcacacgaga
      121 agctcgagaa gaacatcggc ctgctggcca tcctgaccgc gatcgcggtg tcgctgggcg
      181 gcctcgccga gatcgtgccg atgatgcacg acgcgcaggc gatccagccg ctgcccggcg
      241 tccggcccta ccccgcgctg cagctcgccg ggcgcgacgt ctacgtccgc gagggttgct
      301 acaactgcca ttcgcagatg gtgcgcacgc tgcgcttcga gaccgagcgc tacggccact
      361 attcgatggc cggcgaatcg gtgtacgacc gcccgttcca gtggggctcc aagcgcaccg
      421 gcccggacct cgcgcgcgtc ggcggccgct actcggacga ctggcaccgc gtccacctca
      481 acaacccgcg ggacgtggtg cccgagtcca acatgccggc gttcccgtgg ctggcgaaca
      541 acctgctcga cggcaaggac gtcgcctcgc acatgaaggc gttgcagcgg ctgggtgatc
      601 cctactcgga cgcggagatc cgcaacgcgc cggccgcggt ggccggcaag accgaactgg
      661 acgccgtcgt ggcctacctg cagggcctcg ggcggcacgc gccgcgtgga gactgaaaga
      721 tgctgtcggg aatcgtgacc ctggtgtgga tgctggcctt cgtggccgtg tcggtgtggg
      781 cctggcgccc ggcgcaacgc gccggcttcg acgacgccgc gcgactggcc gtggacgacg
      841 cggccgcgcc cgccgacgag gcggaggcca gccgatgagc gccggatggt cgttgttcgt
      901 catcgccttc accctgttca acctgctcgg cgcggcgtgg ctgctgtggt ggaccgccag
      961 gcgccgcccc ggcgacccga agccggagga caccagccac tactgggacg gcgacatcac
     1021 cgaatacaac aagccgatgc cgcgctggtg gatcaacggc ttcttcctct cgatcgcgtt
     1081 cgcgctcggc tacctcacct ggttcggcgg ctggggcggc ttcaagggcg tgggcggctg
     1141 gagctcgacg gcccagtacg cacgcgaaaa ggcggtggcg gacaagcagc tggacgaaac
     1201 cttcgcccgc ttcgccggca agcccatcga cgtgatcgcg cgcgatccgt atgcgcgcaa
     1261 gctcggccag gcgatcttcg ccaacacctg cgcgacctgc cacggctcga ccgcgcacgg
     1321 tgcggcgggc ttccccaacc tcaccgacga cacctggaag tggggcggca ccccggacga
     1381 cgtgctgcac agcgtgcagg acggccgcga cggcgtgatg ccgacgtggg gcaaagtgct
     1441 caccggcatg ggcggtccga acgcggtcga ccaggtcgtg gcctacgtgc gcacgctcgg
     1501 cgatccgaag ctgatggaca acaacttcat ggcggcgcag ggcaaggcgc tgtacgaggg
     1561 cgtgtgcgtg gcctgccacg gcatcgacgg caagggcaac caggcgctcg gcgcgccgaa
     1621 cctggccgac gacgactggc tgtacggcga cagcagcgag agcctgcacc agaccatcgc
     1681 cgagggccgc cacggcgtga tgcccgcgca cctgccgatc ctcggcgaca cccgcacgcg
     1741 cctcgtcgcc gcgtacgtgt ggtcgctgtc gcacaaggag ccgggcgcgg cggccgcggc
     1801 ccactgaaat gacggacccg ttgcgacccg acttcgacca tccgccgcgc ccgctggcgc
     1861 agcggctcgg cgcgatcctg tggccgagct tcttctccgc cggggtcgcg acgatggtgt
     1921 tcttcgcctt cgtcgatccc ctgcagctgc gcgacatgac gttcccggac ctggaaatca
     1981 cccgcgagat gggctacacg ctcggcttct tcgcgttctg ggcggcgacc gcggcctcca
     2041 gcctcttcag ctggatcctg ctgcggccgt ccagccgctt caacggcccg cgcgcacggt
     2101 agacggcgtc ggcaatgaac aaacgcatcg acatccgcct cgacgagggc gattcgcatt
     2161 acgtcagcga gcgcaaggtc tacccgcgcg acgtgagcgg ccgcttcgac cgcctgcgca
     2221 aggtggccgt gttctggctg ctgggcatgt actacctgtt tccgtggctg gaatggaacg
     2281 gccgccaggc ggtgctgttc gacctgcccg cgcgcaagtt ccatgtcttc gggctgacgt
     2341 tctggccgca ggatttcagc ctcctggcga tcctgctcat catcctcgcg ctgaccctgt
     2401 tcttcgtcac cgcgctggcc gggcgcctgt ggtgcggcta cgcctgcccg cagacggtgt
     2461 ggaccgagtg cttcctgtgg atggagcgct gggccgaggg cgaccgcgcc cggcgcatga
     2521 agctcgacgc cggcccgtgg aaccgcgaga agatcctgcg caagggcgcc aagcacgtgt
     2581 tgtggctggt gttcgcgctg tggaccggct tcaccttcgt cggcttcttc accccgatcg
     2641 gcgggctcgc gcagcgcctg tggccattcg gatggaacgg ctgggaaacc ttctgggtgc
     2701 tgttctacgc attcgccacc tggggcaacg ccggcttcct gcgcgagcag gtgtgcaagt
     2761 acatgtgccc gtacgcgcgc ttccagagcg cgatgttcga ccgcgacacg ctgatcatcg
     2821 cctacgaccc gatgcgcggc gagccgcgcg gcccgcgcca gcgcggcctg aagagcgtgc
     2881 tcgaacgcgc gcgcggcctg ctcgacgcac gcgtcgccta cgactacgtg ttccgcgcca
     2941 cccgccatcc cagcgccgcg caggcccggc tgcaggcggc cggcacggtc accctcgccg
     3001 gcgccggcgt cgagggcgcg ccgctgccca agttcgcctt cgaggagatg ggcgactgca
     3061 tcgactgcac gatgtgcgtg caggtctgcc cggtcggcat cgacatccgc aacggcctcc
     3121 agtacgaatg catcgcctgc ggcgcctgca tcgacgcctg cgacgaggtg atggacaagg
     3181 tcggctatcc gcgtggcctg atccgctatt ccacccagaa cgcgatcgac ggcaagccgg
     3241 ggcgcgtcgc ccgcccgcgc atcttcgtat atgccgccgt gctgttgctg ctggtgtcgg
     3301 cgtggacgtg gggggtcacc caccgcagcc cgctgatcgc cgacgtcctg cgcgaccgca
     3361 acgcgctcta ccgcgagacc ggcgccggca tcgagaacgg ctacaccctc aagctcgcca
     3421 acaagaccga ccgcgcgcag cgctacgtgg tggcgatgca ggcgccggcg ggcctgcagc
     3481 tgcgcgaccc gggcgcgatc gtggtcgcgg cgggcgacgt cgcggcggtg ccgctgacgg
     3541 tcgtgggcaa cgcgtcctcg cacggccgca ccgcgatccg gttcgacgtg cattccaccg
     3601 acggcgccgc gcgcgacgtc gtcgacagca gtttcttcgg accgatgtga tggagaccgg
     3661 cgacgacaag cggtccgcgt ggcgggagcc gatggtctgg ctgctggtcg cgatcccggc
     3721 gctggcggtg ctggcctcgg tcgtgctgct ggtcgccgcc ggccacacgt ccggcaacaa
     3781 cgacctcgtg cccgacaagg tggcgcgcac cggccaggcg caggtcgccg acctcggccc
     3841 ggccgagcgc gcccgggcgc tcgggctggg cgcggtggtg cgcgtctccg ccggcggcat
     3901 cgacgtgctg ccgaccggcg gcgggttcga ccgcagccgg ccgctgcgac tgtcgctggt
     3961 gcatccgctg gaagcggcgc aggaccgaac gctggcgctg gcgccgtcgg cgctcggctg
     4021 gcacgccgac ggcagcgtgg acacgcgcca cgactggaac gtgcgcctgc agccggccga
     4081 tggcgcctgg cgcctggacg ggcgctggcc gcgcggccag cgcgcgatgt tcgtgcaccc
     4141 ggcggtgccc ggagccgagt gatggacgcc gctgtccgcg gggaggcgac gccctgcttc
     4201 cattgcggtg atccggtcgc ggccggcgtc gccgtccacg aaccactcga ggacgcggcc
     4261 cgtgcgttct gctgcggcgg ctgcgccgcc gccgcgcgct ggatccgcga cgcccggctc
     4321 ggcgactact accgcctgcg cgacgccgcc ggcagccgcg tggatgccac cctggtcgac
     4381 tacgccgcct gggaccgcga ggacgtcatc gccggccacg tgcacccctg cgccggcggc
     4441 cgcgaaatcg tgctgctcac cgacggcatg cactgcgctg cctgtgcgtg gctgatcgac
     4501 cgggcgctgc gctgcgagcc cggcgtgctc gacgccggcg ccaacgcgat gaccgggcgc
     4561 gtgcgcatcg cctgggatcc cgcgcgcgcg ccgctgtcgc gggtgctcgc gcgcatggcc
     4621 gcgctcggct accgcccgta cctcgccgcc ggcgacgcgc gggaacgcga gcggcagcgg
     4681 gaacgcaacc gctggctcct gcgcatcggc atcgccggcc tgggcgcgat gcaggcgatg
     4741 atgttcgcag aggccctcta cctcgacacc gcgcacgcga tgcccggggc gacgcgcgac
     4801 ttcttccgct ggctggcgtt gctggtgtcg gcgccggtgg tgttctattc gggctggccg
     4861 ttcctcgccg gcatggcgcg cgaactgcgc gcgcggcgcg ccggcatgga cacgctggtg
     4921 tcgctgtcgg tgctggtcgc gttcctcgcc agcgtggtgc agacgctgcg cggcggcgag
     4981 cacgtctggt acgacgccgc ggtgatgttc gtgttcctgc tgctgtgcgc gcgcatgctc
     5041 gagcagcgcg tgcgccggct ggcgaccgcg caggtggatg cgctggcccg cgcgcggccg
     5101 gcgctggcgg tgcgcgaagc cgcaggggtc gccgagcagg tcccggtggc gcacctggtc
     5161 gccggcgacg tggtccgggt ggcgccgggc gagaccgtgc ccgcggacgc ggtgctgctg
     5221 gatgccgaag gcgcgttcga cgaggcgctg ctgagcggcg agtcgacgcc gctgcaccgc
     5281 gtcgccggcg atgcggtcta tgcaggcagc ctgtgc
//
LOCUS       DATIQC010000443         3615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_664904, whole genome shotgun sequence.
ACCESSION   DATIQC010000443 DATIQC010000000
VERSION     DATIQC010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3615
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_664904"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1069)
                     /locus_tag="VLM17_09585"
     CDS             complement(<1..1069)
                     /locus_tag="VLM17_09585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65836.1"
                     /translation="MLCALALLAALPALAGAREARDVPAGSVPQLQAGDGLLLVEADS
                     DVALASLQLAQVDGDGIEALHATDAGVATRLLVLPAGRYAWRGVTVQSGRRYSFGNMR
                     EEAFDVPAGRITYAGDLVLRLKGRSNLGFQLANRGLRAIDWLRARYPQLAQALPLVYS
                     GHYPDPFPAFYARERAATPGAASLADDALSAVLAPPAPGKLPLSPLDLWHYRRLDSAS
                     LNPGGDLVVENVHENDALWALDLVDLQSRARVRLATSAQRFGSIDWAGDRVLLAGTGD
                     DATRERVSLFDIRTVAGAAPTFAAQRLPDDGHVLATRTGVPDQVLYERRGAYGRLEVV
                     ALDIGLRDGARRFTAELRGRLA"
     gene            1336..1821
                     /locus_tag="VLM17_09590"
     CDS             1336..1821
                     /locus_tag="VLM17_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003471373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HSR65837.1"
                     /translation="MPTPHELEDKLWEALKSDRTVMLGLDGAEGGHARPMTAQFEERR
                     GPIWFFSARDHALVRDLDRGGAAHVSFVAKDHGLFASLGGELRLDTDRAVLDRLWNPF
                     VAAWYEGGKDDPNLALLRFDADHAEIWENASSLLAGLKLLFGADPKRDYAGKVARVDL
                     H"
     gene            complement(1834..2433)
                     /locus_tag="VLM17_09595"
     CDS             complement(1834..2433)
                     /locus_tag="VLM17_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HSR65838.1"
                     /translation="MRILLVGGRGTIGRAVAAELGPRHEVIEAGRRSGSVTLDLADGA
                     SVRRALESVGPLDAIVSAAGHVGWGPLLELTPDQWDFSVNNKLMGQVVLALIGAQSLR
                     DGGSITLTSGVLVDQPVPGGAAASLANGGIEAFVRAAAIELPRGLRINAVSPGVVAES
                     MDDYAAYFRGFVPVPAARVALAYSRSVEGADTGKVYAAQ"
     gene            2554..>3615
                     /locus_tag="VLM17_09600"
     CDS             2554..>3615
                     /locus_tag="VLM17_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005915468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1615 domain-containing protein"
                     /protein_id="HSR65839.1"
                     /translation="MPRPCRPPSRSAPRGLRALAFAACLAGLAACAPSPAPPRPEEVR
                     ARIVRLLPARTPDRAGWAADIQAAFAAMDIAPSRENLCATLAVAGQESNFVVDPPVPG
                     LGGIALAELERRAGGHGVPALLVRAALQFTSPDGRSYADRLAAARTEQDLSRIYEDFI
                     GSVPLGRRLLAGGNPVHTGGPMQVGIAFAEQFARRQGYPYPVDGSIRHEVFTRRGGLY
                     FGIAHLLAYPAAYPQMLYRFADYNAGFYASRNAAFQQAVQVAAGIHIPLDGDLVRYDG
                     APAQTEAALRTIAWQLQLDEGRIHRALEDGESPGFEQGALYERVFALAEQHAHHRLPR
                     AILPRITLESPKITRHLTTA"
BASE COUNT          493 a         1390 c         1271 g          461 t
ORIGIN      
        1 cggcgaggcg cccgcgcagt tccgccgtga agcggcgcgc gccgtcgcgc agcccgatat
       61 cgagggcgac gacttcgagc cggccatagg cgccgcgacg ttcgtacagg acctggtccg
      121 gcacgccggt gcgcgtggcc aggacgtggc cgtcgtcggg caggcgctgc gcggcgaagg
      181 tcggcgccgc gcccgccacc gtgcggatgt cgaacagcga cacgcgctcg cgggtggcgt
      241 cgtcgccggt cccggcgagc agcacgcggt cgccggccca gtcgatcgaa ccgaagcgct
      301 gcgcgctggt ggcgaggcgc acgcgcgccc gcgactggag gtccaccagg tcgagggccc
      361 acagcgcatc gttctcgtgc acgttctcga ccaccaggtc gccgcccgga ttgaggctgg
      421 cgctgtcgag gcggcggtag tgccacaggt cgagtggcga cagcggcagc ttgccgggcg
      481 cgggcggcgc gagcaccgcg gagagcgcgt cgtcggccag cgacgcggcg cccggggtgg
      541 cggcgcgctc gcgcgcgtag aacgccggga acggatcggg atagtggccc gaatagacca
      601 gcggcaacgc ctgcgcgagc tgcgggtagc gcgcgcgcag ccagtcgatc gcgcgcaggc
      661 cgcggttggc gagctggaag ccgaggttgc tgcgtccttt cagccgcagc accaggtcgc
      721 cggcgtaggt gatgcggccg gcgggcacgt cgaaggcttc ctcgcgcatg ttgccaaagc
      781 tgtagcggcg cccggactgc acggtcaccc cgcgccaggc gtagcggccg gccggcagca
      841 ccagcaggcg ggtggccacc ccggcgtcgg tggcgtgcag cgcctcgatg ccgtcgccgt
      901 cgacctgcgc cagctgaagc gaggcgagcg cgacgtcgct gtcggcttcg accagcagca
      961 ggccatcgcc ggcctgcagt tgcggcacgc tccctgcggg cacgtcgcgc gcctcgcgcg
     1021 cgccggccag tgccggcagt gccgcgagca gcgcgagcgc gcacagcacg gcgcgcgcac
     1081 ccgacgcgaa gcgaccccgg gtccctggct gtcgcgcggc cgactcccca gccgccgcgc
     1141 ccccgatccg aactggcact gccgaactcc cccttgcagg cacgacgcta gcgcgtttcg
     1201 tgcaccgcga atcgggacgc gctgcgctgt ttccctcaat gaatgcgagg cgcgcgatga
     1261 atgcgccgca gccttgccat gccgctgact tccggcgcgc tacaaccctg ttcccatcgc
     1321 ccgacgggaa ccgccatgcc cactccgcac gaactcgaag acaagctctg ggaggcgctg
     1381 aagtccgacc gcacggtgat gctcgggctc gacggtgccg aaggcgggca tgcgcggccg
     1441 atgaccgccc agttcgagga gcggcgcggg ccgatctggt tcttctccgc gcgcgaccat
     1501 gcgctggtac gcgacctcga ccgtggcggc gccgcgcacg tcagcttcgt ggcgaaggac
     1561 cacggcctgt tcgccagcct cggcggcgag ctgcgcctgg acaccgaccg cgcggtgctc
     1621 gaccggctgt ggaatccctt cgtcgcggcc tggtacgagg gcggcaagga cgaccccaac
     1681 ctcgcgctgc tgcgcttcga tgccgaccac gcggagatct gggagaacgc ctccagcctg
     1741 ctggccggcc tcaagctgct gttcggcgcc gacccgaagc gcgactacgc cggcaaggtc
     1801 gcccgcgtcg acctgcactg acgacaacac gcgtcattgc gcggcgtaga ccttgccggt
     1861 gtcggcgcct tcgaccgagc ggctgtaggc gagcgcgacg cgcgcggccg gcaccggcac
     1921 gaagccgcgg aagtacgccg cgtagtcgtc catcgattcg gccaccacgc ccgggctcac
     1981 cgcgttgatg cgcaggccgc gcggcagttc gatcgccgcg gcgcgcacga acgcctcgat
     2041 gccgccgttg gccaggctgg ccgccgcgcc gcccggcacc ggctggtcga ccagcacgcc
     2101 ggaggtgagc gtgatcgacc cgccgtcgcg cagggactgc gcgccgatga gcgcgagcac
     2161 cacctgcccc atcagcttgt tgttcacgct gaagtcccac tggtcggggg tgagctcgag
     2221 cagcgggccc cagccgacgt ggcccgcggc cgagacgatc gcgtccagcg ggccgaccga
     2281 ttccagcgcg cgccggacac tcgcgccatc ggccaggtcc agcgtcaccg agccgctccg
     2341 gcgcccggcc tcgatgacct cgtgccgggg ccccagctcc gccgccaccg cgcggccgat
     2401 cgtgccgcgg ccacccacca gcaggatgcg catgtcgtct cctttccgcg cccggtgcgc
     2461 gagagcggca gcctagccgc atccgcgcct gccatcatgt ggcgcgtcca agacacagcg
     2521 tccgaccgat gggtcgccgc ctcctcaccg agcatgcccc gaccctgccg cccaccttcc
     2581 cgatccgctc cgcgtggctt gcgcgcgctc gcgttcgccg cctgcctcgc ggggctcgcg
     2641 gcctgcgcgc cctcgcccgc gccgcccagg ccggaagagg tgcgcgcacg catcgtccgg
     2701 ctgctgccgg cgcgcacgcc cgatcgcgcc ggctgggcgg ccgacatcca ggccgcgttc
     2761 gccgcgatgg acatcgcgcc gagccgggag aacctgtgcg cgacgttggc ggtggccgga
     2821 caggagtcca acttcgtcgt cgacccgccg gtgcccgggc tcggcgggat cgcgctggcc
     2881 gaactggagc gccgcgccgg cggacacggc gtccccgcgc tgctggtccg cgccgcgctg
     2941 cagttcacct cgcccgacgg gcgctcctac gccgaccgcc tcgccgcggc gcggaccgag
     3001 caggacctca gccgcatcta cgaggacttc atcgggtcgg tgccgctggg tcggcgactg
     3061 ctcgccggcg gcaacccggt gcataccggc gggccgatgc aggtcggcat cgccttcgcc
     3121 gagcagttcg cccgccggca gggctatccg tacccggtcg acggcagcat ccgccacgag
     3181 gtgttcaccc gccgcggcgg gctctacttc ggcattgccc acctgctcgc ctacccggcc
     3241 gcatatccgc agatgctgta ccgcttcgcc gactacaacg ccggtttcta cgccagccgc
     3301 aacgcggcct tccagcaggc ggtccaggtc gcggccggca tccacatccc gctcgacggc
     3361 gacctcgtcc gctacgacgg cgcccccgcg cagaccgaag ccgcgctgcg caccatcgcc
     3421 tggcaactgc agctggacga ggggcggatc caccgcgcgc tggaggacgg cgagagtccc
     3481 ggcttcgagc agggcgcgtt gtacgagcgc gtgttcgccc tggccgaaca gcacgcgcac
     3541 catcgcctgc cgcgcgcgat cctgccgcgc atcaccctgg aaagcccgaa gatcacccgc
     3601 cacctgacca ccgcg
//
LOCUS       DATIQC010000444         4178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_417644, whole genome shotgun sequence.
ACCESSION   DATIQC010000444 DATIQC010000000
VERSION     DATIQC010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4178
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417644"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..475
                     /locus_tag="VLM17_09605"
     CDS             110..475
                     /locus_tag="VLM17_09605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR65840.1"
                     /translation="MSARLLIVDDSTSMRQMVAFALSSGGFTVEQAEDGQAALDIARG
                     QRFDAVVTDVNMPRMDGIELIRQLRQLPTYKFTPLLMLTTESGGDKKAEGKAAGATGW
                     LVKPFDPEQLLATVRKVLG"
     gene            536..2521
                     /locus_tag="VLM17_09610"
     CDS             536..2521
                     /locus_tag="VLM17_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008577777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HSR65841.1"
                     /translation="MDIRQFHAAFFEESRENLAAMESGLLALESASADGETIHVVFRA
                     AHSIKGGAATFGFTSVTDLTHLLETLLDEARAGKRALGSEAIGALLASVDVLRGLLAA
                     AENGDAIDEVGLARARAGLEKLLEGDAAGAAAPGGQPGASDAPERWEIGFRPAPSLFM
                     SGNDPLRILRELGRHGELGVTCLDERVPGFGAMDPYEAYLAWDLTLPGDVPRAAIDEA
                     FAWVEDQCELSIQAIAAQPKHPLAEAVAAATGAEPAGGNVAQFAQRSSDSDGSIRVAV
                     TKVDALINLVGELVITQAMLRQRSAQLDPVAHELLLSGLEQLDRNTRDLQEAVMGVRM
                     LPLDFAFSRFPRMVRDLSARLEKKVRLRMAGEGTELDKGMIEKIVDPLVHLVRNAIDH
                     GLESPADRRAAGKDETGTLSLSAIHQGGHIVIEISDDGRGLDRERILRKAAERGIPVA
                     DNPTDAQVWDLVFAPGFSTAEQLTDLSGRGVGMDVVRKNITALGGTVEIRSRQGQGTT
                     VSIKLPLTLAILDGMSVAVGGEVFIVPLNTVIESLQPAVADVRTIANDSRVLKVRDDY
                     LPLVDLAGFYGLSARNRNPATGTAGIVVVIESEGQRLALEVDELVGQQQVVVKNLEAN
                     YRRVPGVSGATILGDGRVALIIDSNGLAAALRLPVAA"
     gene            3017..>4178
                     /locus_tag="VLM17_09615"
     CDS             3017..>4178
                     /locus_tag="VLM17_09615"
                     /inference="COORDINATES: protein motif:HMM:NF024140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP four helix bundle domain-containing protein"
                     /protein_id="HSR65842.1"
                     /translation="MRVGTRLSCAFGLLLLVMGVMGVVAIANLGALQGRLDEVVKVNG
                     AKTQYLETMLDATQQVASLVRDAMVRREPAFARTATERLTGLRHQFDDANGHLQQLPA
                     SAEDRVLRTRALQARAYAKPINDRMLALLADGTPDAAEAVLKGQAAPAMQAWQDLLRA
                     DMAAQFRSNAKAYQAARAGSQRARALVLGIVGSALLLTILLAWRTTRSLTLPLAQATR
                     VARDVAGGKLEGRIEASGRDEIAQLLASMHEMQSVLRRFAEAQAEIERRHDAGDIDHR
                     IPASGFAGAYADMAEGVNRLAASHIAVKFKLVQIISEYAKGDLSRDMDRMPGRKAEIT
                     AAADAAKSQLLAVNAEIKALVDAAVAGDFSRRGDAQRFQFVYRDLVESLNTLM"
BASE COUNT          644 a         1522 c         1439 g          573 t
ORIGIN      
        1 gcgggtgcga aaccaccatt gccacgccct cgccgaccct ggcccaggcc gcgcgcgacc
       61 tcgcgctcgc ggtgagcctc ggcgtcgatg tttcccacgg agaaagcctg tgagtgcccg
      121 tttgctgatc gtcgacgact ccacctccat gcggcagatg gtcgcgttcg ccctgagttc
      181 gggcggcttc accgtcgagc aggccgagga cggccaggcc gcgctcgaca tcgcccgcgg
      241 gcagcgcttc gacgcggtgg tgaccgacgt caacatgccg cgcatggacg gcatcgagct
      301 gatccgccag ctgcgccagc tgccgaccta caagttcacc ccgctgctga tgctgaccac
      361 cgagtcgggc ggcgacaaga aggccgaagg caaggccgcg ggcgcgaccg gctggctggt
      421 caagccgttc gaccccgaac agctgctcgc caccgtgcgc aaggtgctcg gctgagccgc
      481 gcgccctccc cgcccagcac gtccccgcag tagccacgcg acaggcctcg ttacgatgga
      541 catccgccag ttccacgccg cgttcttcga ggaaagccgc gagaacctcg ccgcgatgga
      601 gagcggcctg ctcgcgctgg aatcggccag cgccgacggc gagaccatcc acgtggtgtt
      661 ccgcgcggcg cattcgatca agggcggtgc ggcgaccttc ggcttcacct cggtcaccga
      721 cctgacccac ctgctggaaa cgctgctcga cgaggcgcgc gccggcaagc gcgcgctggg
      781 cagcgaggcg atcggcgcgc tgctggcgtc ggtggacgtg ctgcgcggac tgctcgcggc
      841 ggccgagaac ggcgacgcga tcgacgaggt cggcctggcg cgcgcgcgcg ccgggctgga
      901 gaagctgctc gagggcgacg ccgccggcgc ggcagccccg ggcgggcagc ccggggcgag
      961 cgacgcgccc gagcgctggg agatcggctt caggccggcc ccgtcgctgt tcatgagcgg
     1021 caacgatccg ctgcggatcc tgcgcgagct cggccgccat ggcgaactcg gcgtcacctg
     1081 cctcgatgag cgcgtgcccg gcttcggcgc gatggatccg tacgaggcct acctggcgtg
     1141 ggacctcacc ctgcccggcg acgtgccgcg cgcggcgatc gacgaggcgt tcgcctgggt
     1201 cgaggaccag tgcgagctgt cgatccaggc gatcgccgcg cagccgaagc atccgctcgc
     1261 cgaagccgtc gccgcggcga ccggcgccga gccggccggc ggcaacgtcg cccagttcgc
     1321 ccagcgctcc tccgacagcg acggctcgat ccgcgtcgcg gtgaccaagg tcgatgcgct
     1381 catcaacctg gtcggcgaac tcgtcatcac ccaggcgatg ctgcgccagc gctcggcgca
     1441 gctcgacccg gtcgcgcacg agctgctgct gtccgggctc gagcagctcg accgcaacac
     1501 ccgcgacctg caggaagcgg tgatgggcgt gcgcatgctg ccgttggact tcgccttcag
     1561 ccgcttcccg cgcatggtcc gcgacctgtc cgcgcgcctg gagaagaagg tgcgcctgcg
     1621 catggccggc gaaggcaccg agctcgacaa gggcatgatc gagaagatcg tcgacccgct
     1681 ggtgcacctg gtgcgcaacg cgatcgacca tgggctcgaa tcgccggccg accgtcgcgc
     1741 ggcaggcaag gacgagaccg gcacgctgag cctgtcggcg atccaccagg gcggccacat
     1801 cgtcatcgag atcagcgacg acggccgcgg cctcgaccgc gagcgcatcc tccggaaggc
     1861 cgccgagcgc ggcatcccgg tcgccgacaa cccgaccgac gcgcaggtgt gggacctggt
     1921 gttcgcgccg ggcttctcca ccgccgagca gctcaccgac ctgtccgggc gcggcgtcgg
     1981 catggacgtg gtgcgcaaga acatcactgc gctcggcggc acggtcgaga tccgcagccg
     2041 ccagggccag ggcacgacgg tgtcgatcaa gctgccgctg acgctcgcga tcctggacgg
     2101 catgtcggtg gcggtcggcg gcgaggtgtt catcgtgccg ctcaacacgg tgatcgagtc
     2161 gctgcagccc gcggtcgccg acgtgcgcac catcgccaac gactcgcgcg tgctgaaggt
     2221 gcgcgacgac tacctgccgc tggtggacct cgcgggcttc tacggcctgt cggcgcgcaa
     2281 ccgcaacccg gccaccggca ccgccgggat cgtggtggtg atcgaaagcg aaggccagcg
     2341 cctcgcgctg gaagtcgacg aactggtcgg ccagcagcag gtggtggtga agaacctcga
     2401 ggccaactac cgccgcgtgc cgggcgtgtc cggcgcgacc atcctcggcg acggccgcgt
     2461 cgcgctgatc atcgattcca acggcctggc ggcggcgctg cggctgccgg tcgcggcctg
     2521 acccgacacg gcattcttgc cgtcggccgg gcgtcgatcg cacggcgccg gatcgtccac
     2581 gctcgccagc ctccgcgtcc cgcgaacaca ggttcgcggc gcgtttgatg gcgcccgacc
     2641 gggcgtcccg caacccgccg gcgcacccgc ggcccccctt gcggcaggcc tgctccgatc
     2701 agcccgagcg ctgcgactcg ccgcgccgcg cgtccttccc gcggcacggg cgtgcagcac
     2761 caccatcctc gccgctacgc ggaccctgcg tcgtcgacgc gccccgatcg cggcacatcg
     2821 cctgcgatgc acgaaagcct tcgatccgaa ttgacctgga tcaagcgaaa cgcggttttg
     2881 cccggcctct tcttcgatcc gcgagccgcc ccacacatcg cgacatccga cctcaagcgt
     2941 ccccgtcatc ggccgtttcc gcctgcgaca caacgctggt caaggaacca attcgatgga
     3001 attctcgctt cgaaacatgc gggtaggcac ccgcctgtcc tgcgcattcg gcctgctcct
     3061 gctggtgatg ggagtcatgg gcgtcgtcgc aatcgcaaac ctgggagcgc tgcagggccg
     3121 gttggacgag gtcgtcaagg tcaatggcgc caagacccaa tacctggaga cgatgctcga
     3181 cgcgacccag caggtcgcct cgctggtgcg cgacgcgatg gtgcggcggg agcctgcatt
     3241 cgcccgcacc gccacggagc gcctgaccgg tctgcgccat cagttcgacg atgccaacgg
     3301 gcatctccag cagctgcccg catcggcgga agaccgggtg ttgcgcacgc gcgccctgca
     3361 ggcgcgggcc tacgccaagc cgatcaacga tcgcatgctc gccctcctgg cggacggcac
     3421 gcccgacgcg gcggaggcgg tgctgaaggg gcaggcggcg ccggccatgc aggcctggca
     3481 ggatctcctg cgcgccgaca tggcggccca gttccgctcc aacgccaagg cgtaccaggc
     3541 ggcgcgggcc ggatcccagc gcgcccgcgc gctggtgctc ggcatcgtcg gcagcgcgct
     3601 gctgctgacc atcctgcttg cctggcgcac cacccgcagc ctcaccctgc cgctcgcgca
     3661 ggcgacgcgg gtcgcgcgtg acgtcgccgg gggcaagctg gaaggccgga tcgaagccag
     3721 cggtcgcgac gagatcgcgc aactgctcgc gtccatgcac gagatgcagt cggtcctgcg
     3781 ccgcttcgcc gaggcgcagg ccgagatcga gcgccggcac gatgcgggcg acatcgacca
     3841 tcgcattccg gccagcgggt tcgcgggggc ctacgcggac atggccgaag gcgtcaaccg
     3901 gcttgccgca tcgcacatcg cggtcaagtt caagctggtg cagatcatca gcgaatacgc
     3961 caagggcgac ctgtcgcgcg acatggaccg catgcccggc aggaaagcgg aaatcacggc
     4021 ggccgccgac gccgccaagt cgcagctgct cgcggtcaac gccgagatca aggcgctggt
     4081 cgacgcggcg gtcgcgggcg acttcagcag gcgcggcgac gcgcagcgct tccagttcgt
     4141 ctaccgcgac ctggtcgaat cgctcaacac gctgatgg
//
LOCUS       DATIQC010000445         1532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_629342, whole genome shotgun sequence.
ACCESSION   DATIQC010000445 DATIQC010000000
VERSION     DATIQC010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_629342"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..905
                     /locus_tag="VLM17_09620"
     CDS             129..905
                     /locus_tag="VLM17_09620"
                     /inference="COORDINATES: protein motif:HMM:NF014724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HSR65843.1"
                     /translation="MLTSVLHALGELVVALTYPPTLTAAVLMCAGLALLLRWRRLAVG
                     LAAGAIAWSALWSVPEASDWLRHTLARQYPPVADAALPRADAIVVLGGGQYRWLRDPE
                     LDPYLLERSRLAAGARAWLEGRAPVVILSGGSSGGRGLTEAGRMAEAIGRMGVPRSAL
                     LLEERSRDTAGNARFTAQLARQRHVRSILLVTSAVHMPRASLLFREAGLQVVPVPVPE
                     GAERVGWRERWLPSPGALWRSGRALKEYAGLLSLRVLACA"
     gene            1059..>1532
                     /locus_tag="VLM17_09625"
     CDS             1059..>1532
                     /locus_tag="VLM17_09625"
                     /inference="COORDINATES: protein motif:HMM:NF014606.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HSR65844.1"
                     /translation="MNIIVRPFAVLAATFALAGCTGQYLTTGETPRDNFIETGEVKVV
                     PITPELLADPSMSATATALPAEVTGYRPETYHRQPGDSLIVTVWDHPELTTPAGSQQQ
                     TVANGRLVQPDGTFFFPYAGKLQVAGKSIEQVRSTLTSRLARYLKDPQVDVNVIGS"
BASE COUNT          208 a          564 c          550 g          210 t
ORIGIN      
        1 ggccggcgcg gtgcgcgccg gcgaggacac gaccgacatc cggatcgggg ccaaccagta
       61 cctatgactt cgccgcgcgc gctcgcgtgc ccgcgtggcg cgacggaatc cccgggaccc
      121 gaccgtcgat gctgacgtcc gtgctgcacg cgctcggcga actggtggtc gcgctgacct
      181 acccgccgac cctgaccgcc gccgtgctca tgtgcgccgg actggcgctg ctgctgcgct
      241 ggcggaggct cgccgtgggg ctggccgccg gcgcgatcgc ctggtcggcg ctgtggtcgg
      301 tgccggaggc gtccgactgg ctgcggcata cgctggcgcg gcaatacccc ccggtggccg
      361 acgcggcgct gccgcgcgcc gatgcgatcg tcgtgctcgg cggtggccag taccgctggc
      421 tgcgcgatcc ggagctggat ccctacctgc tcgagcgcag ccgcctcgcc gccggcgcgc
      481 gggcgtggct ggagggcagg gcgcccgtgg tgatcctgtc gggcgggagc agcggcggcc
      541 ggggcctgac cgaagccggc cggatggccg aggcgatcgg ccggatgggc gtgccgcgct
      601 ccgcgctgct gctggaggaa cgcagccgcg acaccgccgg caacgcccgc ttcaccgcgc
      661 aactggcgcg gcagcggcac gtgcgcagca tcctgctggt cacctccgcg gtgcacatgc
      721 cgcgcgccag cctgctgttc cgcgaggccg gactgcaggt ggtgccggtg ccggtgccgg
      781 agggtgccga gcgcgtgggc tggcgcgagc gctggctgcc cagccccggg gcgctgtggc
      841 gcagcgggcg ggcgctgaag gaatacgcgg gcctgctgtc gctgcgcgtg ctggcctgcg
      901 cgtgatcgac gcgtgagcct cgaaacccgg aagcggcttt cacgccattc aggcacccac
      961 gctccctagt ctgcgcaagc gacagcggca gggacgaccc tcgggcccgc cgcgctaccg
     1021 acgaaatcgt cccctttagg cacgaatgag gagcccacgt gaacatcatc gtccgtccct
     1081 tcgcagtcct cgccgccacc ttcgcgcttg caggatgcac cgggcagtac ctgaccacgg
     1141 gcgagacgcc gcgcgacaac ttcatcgaga ccggcgaggt gaaggtcgtg ccgatcacgc
     1201 ccgaactgct cgccgatcct tcgatgagcg cgacggcgac ggcgttgccg gccgaagtca
     1261 ccggctaccg cccggagacc taccaccggc agcccggcga ttccctcatc gtcacggtgt
     1321 gggaccatcc cgagctgacc acgcccgccg gttcccagca gcagaccgtg gccaacggcc
     1381 gcctggtgca gcccgacggc acgttcttct tcccctatgc gggcaagctg caggtcgccg
     1441 gcaagagcat cgagcaggtg cgcagcacgc tgaccagccg cctcgcccgc tacctcaagg
     1501 acccgcaggt cgacgtcaac gtgatcgggt cc
//
LOCUS       DATIQC010000446         7106 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_29169, whole genome shotgun sequence.
ACCESSION   DATIQC010000446 DATIQC010000000
VERSION     DATIQC010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7106
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29169"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..162)
                     /gene="ssrS"
                     /locus_tag="VLM17_09630"
     ncRNA           complement(<1..162)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="VLM17_09630"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(237..542)
                     /locus_tag="VLM17_09635"
     CDS             complement(237..542)
                     /locus_tag="VLM17_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005994537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HSR65845.1"
                     /translation="MSTASEQVSIRILDREYTVGVAAEERDSLAAAARLLDQKMREVR
                     GANRMAAVDRVAVLAALNLAHELQQLRDQQGGHDGEVARALAAMQRKLDDALAASSR"
     gene            complement(539..760)
                     /locus_tag="VLM17_09640"
     CDS             complement(539..760)
                     /locus_tag="VLM17_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02449 family protein"
                     /protein_id="HSR65846.1"
                     /translation="MDASALLAQLHALTDRVDTLAERVQRLAEENRSLRQQQEQLASD
                     RAQLLAKNEQARSRVEAMIARLKSLEQHT"
     gene            complement(792..5330)
                     /locus_tag="VLM17_09645"
     CDS             complement(792..5330)
                     /locus_tag="VLM17_09645"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR65847.1"
                     /translation="MRFPVPASAAWRRAGCLLALLCMLPPARAEVRDFYFERATGDNG
                     LAQRTVTSLAQDDDGFVWVGTQGGLHRFDGQHYTVFREDPRAPRDPRSLPDSFVTALA
                     PDHAGGLWVGTYAHYIARLDLASGLFRRYAEGADAGPGGRQVLAVLAGPDAVWVGTAA
                     GLERLDPRSGRRQRVLALPPALAPVTAGSRQGLLRDPHGVLWYATAAGLYRFDPGTGE
                     SRRLATMPLRAVLRDRTGRLWAGGAGGLFLVHDQRAVQQAWPRAGSPAADVRALAEAP
                     DGQLWLAIDSSGLLRFDPVTARTLVLRANAALPGALPEDGLNALLVDHAGLLWAGGQI
                     HGVSVADTAGAHFRFITDLARPASVRAIWQAADTSLWLGTDDGRLLRFDRASGAIVDE
                     SALLPGDAAGRAIRVMAFATGEGGQPWVAANTGLFRLDPDPRRPVLQPVPLPGLPAAR
                     LRTLVRDAAGRLWLGTDDAGLLRYDPRTGAVLRLPYRDGDPAGLSHPAVHALLLARDG
                     RLWIGTGHGLDILDPASGQLRHYRQAPGGLDGDLVRALWQTADGAVWVGSHGGLNRVE
                     SGPDGRLRFERPLAAALGDAPPPVVYSLRADPLGRLWLGTDRGLLRFDPRSGSLRHYT
                     PADGLQDVEFNGGAAATLADGRLAFGGVEGLNTFDPLRLGESAYQPPLRLLDVDADGG
                     DRARQPAWDGATLRIPESAGLLRLRVGALDYLGNAGIHYRYRIDGLDHDWIDNGTRSQ
                     ITYTLLPAGRYVFRAQSTNHDGVWSTGELRIPLVVAPPLWRHPLALASYALLAALLLL
                     FAWWLWRARRRRERGYFERIRDREERLKLALWASGDQFWDYDLQRNMLMRMRTHDDVR
                     SASDLRIDSEYEQDHRIHPDDLPQVQERLRQHLRGETALFLSEHRVLENGQWVWIRAR
                     GKAVERDGGGRVLRIAGTARNVTNSRHAERERRIAAEVLRSMTEAVSVLDREFDFVSV
                     NPAFSRMTGYSDVEVIGRNGSLLDSAQHDPGFYRQVREHLERHGRWSGEMWQQRKYGE
                     EFLCAYECTAVLDHNGQHQFYVAVLSDITDQKRAEQELRYLANYDTLTNLPNRTLLAE
                     RLSRAIVRARRQDDRIAVLFLDLDRFKDINDSLGHAAGDRILRAAAVRLQETVGAQHT
                     VARLGGDEFTVVLENLQSPEEADKVAREIIMAFEAPLLTDDRHEVSISPSIGISLYPD
                     HAQVPTELLKQADTAMYQAKSFGRRTFVRYTEAMDVSIRRRATISGALRKVLDRGELR
                     IAYQPRMALAEDRIVGVEALLRWHSPEHGDIPPSQFIPLAEEAGLILEIGEWVLREAC
                     LTLHRWRQHGLSDLRMAVNVSALQLLRGDLPGVVERVLAETGLPPAALELELTESVVM
                     ANAEQTADKLQAFRRLGISLAIDDFGTGYSSLAYLKRLPINTLKIDKEFVDDLSLGSE
                     DAAITTTVIAMARSLGLNVVAEGVETEAQVQFLREHHCDEIQGYWLSPPLDAHRCLAL
                     IRNWSPAGRRAATAGMAP"
     gene            5438..5977
                     /locus_tag="VLM17_09650"
     CDS             5438..5977
                     /locus_tag="VLM17_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HSR65848.1"
                     /translation="MPLPSLDQVAGAVRALGLAVPPPELHGALCGWLAGGGTADADWP
                     AKVLADDALSPVPPGGPLAQLQESSASQFDDRDFSFELLLPGVDASLAERSGALFDWC
                     RGFLGGFGLASGAEPPLSEESREALADIARLAAASPQEEGDEEDEDALTEIEEFVRVA
                     ALLLHGDCVLAPRHRQQFN"
     gene            6025..>7106
                     /locus_tag="VLM17_09655"
     CDS             6025..>7106
                     /locus_tag="VLM17_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P N-terminal domain-containing
                     protein"
                     /protein_id="HSR65849.1"
                     /translation="MKAATGIDAKEFARRRRQLMRMAGDDAIIVLPAAPERISSRDTH
                     HPYRQDSDFWYLTGFAEPEAVLVLVPGRAHGEALLFCRERDPEREGWDGPRSGPEGAV
                     EAFGMDDAYPIADLDEILPGLLEGRSRVYYHFGRDTEFDIQLIGWLNRVRAQVRLGAQ
                     PPHEFLELGHLLDELRLFKSRDELKLMQRAADISVAAHEAVMRAARAGVPEHALQAEL
                     EYVFRRHDAVPAYGSIVGAGANACILHYVANNAVAQDGELVLVDAGAEYRGYASDITR
                     TFPVNGRFTREQRALHDLVHAAQAAALARARPGVAYEAGHQAAVETLTEGLLRFGLLK
                     GTLEQNIRDGHYKRFYRHKTGHWLGL"
BASE COUNT          973 a         2488 c         2666 g          979 t
ORIGIN      
        1 tgcgaaacga ccttgaaccc ggggttcaag tgggaacact tggtagccgt cgggcttccc
       61 gctcgtggcg gacatgcaca ccaggctccc gtcgtgtccc cgtggtcgtc attaagggac
      121 aaggcgaatg tttgcacacg ccgtcgggca cagcagagga cgccggatca gtatagcgac
      181 gcaggtgcgc gcgtcccacc catttgtcgg atcgcgcgcc gcgacgttca gcgacgtcag
      241 cgcgacgatg cggccagtgc gtcgtcgagc ttgcgctgca tcgcggcgag cgcgcgcgcg
      301 acctcgccgt catggccacc ctgctggtcg cgcagctgct gcagttcgtg cgccaggttg
      361 agcgcggcga gcacggcgac gcggtcgacc gccgccatgc ggttggcgcc gcggacctcg
      421 cgcatcttct ggtcgagcag gcgcgcggcg gccgcgaggc tgtcgcgctc ctcggccgcg
      481 acgccgacgg tgtactcacg atccagaatg cggatgctga cctgttcgct ggcggtgctc
      541 acgtgtgctg ctccagcgac ttgaggcggg cgatcatcgc ctcgacgcgc gaccgggcct
      601 gctcgttctt ggcgagcagt tgcgcacggt cggaggccag ctgttcctgc tgctggcgca
      661 ggctgcggtt ttcctcggcg aggcgctgca cgcgctcggc cagcgtgtcg acgcgatcgg
      721 tcagggcgtg cagctgggcg agcagcgcgg aggcatccat gcggccacga taggcagcgg
      781 ccggggggtg gtcaaggcgc catgccggcg gtcgcggccc ggcggccggc cggcgaccag
      841 ttgcggatca acgccaggca gcggtgcgcg tcgagcggcg gcgacagcca gtagccctgg
      901 atctcgtcgc aatggtgctc gcgcaggaac tgcacctgcg cctcggtctc gacgccctcg
      961 gcgaccacgt tgagcccgag cgagcgcgcc atcgcgatga ccgtggtcgt gatcgccgcg
     1021 tcctccgagc cgaggctgag gtcgtcgacg aattccttgt cgatcttcag cgtgttgatc
     1081 ggcaggcgct tgaggtaggc gagcgaggaa tagccggtgc cgaagtcgtc gatcgccagc
     1141 gagatgccga gccggcggaa ggcctgcagc ttgtccgcgg tctgctcggc gttggccatg
     1201 accacgcttt cggtgagctc gagctcgagc gccgccggcg gcagcccggt ttcggcgagc
     1261 acgcgctcga ccacgcccgg caggtcgccg cgcaggagct ggagcgccga gacattcacc
     1321 gccatgcgca ggtccgacag gccgtgctgg cgccagcggt gcagggtcag gcaggcctcg
     1381 cgcagcaccc attcgccgat ctccaggatc agcccggcct cctcggcgag cgggatgaac
     1441 tgcgacggcg ggatgtcgcc gtgctccggg ctgtgccagc gcaggagcgc ctcgacgccg
     1501 acgatgcgat cctcggcgag cgccatgcgc ggctggtagg cgatgcgcag ctcgccgcgg
     1561 tcgagcacct tgcgcagggc gccggagatg gtcgcgcgcc ggcggatcga cacgtccatc
     1621 gcctccgtgt agcgcacgaa ggtgcggcgg ccgaaggact tggcctggta catcgcggtg
     1681 tcggcctgct tgagcagctc ggtcggcacc tgcgcgtggt cggggtacag gctgatgccg
     1741 atcgacggcg agatcgacac ttcgtggcgg tcgtcggtga gcagcggcgc ctcgaacgcc
     1801 atgatgatct cgcgcgcgac cttgtccgct tcctccggcg actgcaggtt ttccagcacc
     1861 acggtgaact cgtcgccccc caggcgcgcc accgtgtgct gcgcgccgac ggtttcctgc
     1921 aggcgtaccg cggccgcgcg caggatgcgg tcgccggcgg catggccgag cgagtcgttg
     1981 atgtccttga agcggtcgag gtcgaggaac agcaccgcga tgcggtcgtc ctggcggcgc
     2041 gcgcgcacga tcgcgcgcga cagccgttcg gcgagcaggg tgcggttggg caggttggtc
     2101 agcgtgtcgt agttggcgag gtagcgcagt tcctgctcgg cgcgcttctg gtcggtgatg
     2161 tcgctgagca cggcgacgta gaactggtgc tggccgttat ggtcgagcac cgcggtgcac
     2221 tcgtaggcgc acaggaactc ctcgccgtac ttgcgctgct gccacatctc gcccgaccag
     2281 cgcccgtggc gctcgaggtg ctcgcgcacc tggcggtaga agccgggatc gtgctgggcg
     2341 ctgtccagca ggctgccgtt gcggccgatc acctcgacgt cggagtagcc ggtcatgcgc
     2401 gagaaggcgg gattgaccga gacgaaatcg aactcgcggt cgagcaccga caccgcctcg
     2461 gtcatgctgc gcagcacctc ggcggcgatc cggcgctcgc gctcggcgtg gcggctgttg
     2521 gtgacgttgc gcgcggtgcc ggcgatgcgc aggacgcggc caccgccgtc gcgctcgacc
     2581 gccttgccgc gcgcgcggat ccacacccac tggccgttct cgagcactcg gtgctccgac
     2641 aagaacagcg ccgtctcgcc acgcaggtgc tggcgcaggc gttcctgcac ctgcggcagg
     2701 tcgtctgggt ggatgcggtg gtcctgctcg tactcgctgt cgatgcgcag gtccgaggcg
     2761 ctgcggacgt cgtcgtgcgt gcgcatgcgc atgagcatgt tgcgctgcag gtcgtagtcc
     2821 cagaactggt cgccggaggc ccacagggcg agcttgaggc gctcctcgcg gtcgcggatg
     2881 cgctcgaagt agccgcgctc gcgccggcgc cgcgcgcgcc acagccacca cgcgaacagc
     2941 agcagcagcg cggcgagtaa agcgtagctg gccagcgcca gcggatgccg ccacagcggc
     3001 ggggcgacca ccagcgggat gcgcagctcg cccgtgctcc acacgccgtc gtggttggtg
     3061 ctctgcgcgc ggaagacgta gcgaccggcg ggtagcagcg tgtaggtgat ctggctgcgc
     3121 gtgccgttgt cgatccagtc gtggtcgagc ccgtcgatcc ggtaccggta gtggatgccg
     3181 gcattgccga gatagtcgag cgcgccgacg cgcaggcgca gcaggcccgc ggactcgggg
     3241 atgcgcaggg tggcgccgtc ccaggccggt tgccgggcgc ggtccccgcc gtcggcgtcg
     3301 acgtccagca ggcgcagcgg cggctggtag gcgctctcgc cgaggcgcaa cgggtcgaac
     3361 gtgttcaggc cctcgacgcc gccgaacgcc agccggccgt cggcgagcgt ggcggccgcg
     3421 ccgccgttga attcgacgtc ctggagcccg tcggcgggcg tgtagtggcg gaggctgccg
     3481 ctgcgcggat cgaatcgcag caggccgcga tcggtgccca gccacagccg cccgagcggg
     3541 tcggcgcgca ggctgtagac gaccggcggc ggggcatcgc cgagcgcggc ggcgagcggc
     3601 cgctcgaagc ggaggcggcc gtccggaccg ctttccaccc ggttcaggcc gccgtggctg
     3661 cccacccaca cggcgccgtc ggcggtctgc cagagcgcgc gcacgaggtc gccatccagc
     3721 ccgccggggg cctggcggta atggcgcagc tggccgctgg ccggatcgag gatgtcgagg
     3781 ccgtggccgg tgccgatcca gagccggccg tcgcgggcga gcagcagcgc atgcacggcc
     3841 ggatgggaca ggccggcggg atcgccgtcg cggtagggga ggcgcaacac ggcgccggtg
     3901 cgggggtcgt agcgcagcag gccggcgtcg tcggtgccga gccacagtcg cccggcggca
     3961 tcgcgcacca acgtgcgcag gcgtgccgcc ggcagccccg gcagcggcac cggctgcagg
     4021 accggccggc gagggtcggg gtcgagccgg aacagtccgg tgttggcggc gacccatggc
     4081 tggccgcctt ccccggtggc gaaggccatc acccggatcg cgcgtcccgc tgcgtcgccg
     4141 ggcagcagcg cgctctcgtc gacgatggcg ccgctggcgc ggtcgaagcg cagcaggcgg
     4201 ccatcgtcgg tgccgagcca caggctggtg tcggccgcct gccagatcgc gcgcacgctg
     4261 gccgggcggg ccaggtcggt gatgaagcgg aagtgcgcac cggcggtatc ggcgaccgaa
     4321 acgccgtgga tctggccgcc cgcccacagc aggccggcat ggtcgaccag cagcgcgttg
     4381 agtccgtctt cgggcaatgc gccgggcaac gcggcgttgg cgcgcaggac gagggtgcgg
     4441 gcggtaacgg ggtcgaagcg cagcaggccg ctggagtcga tcgccagcca cagctggccg
     4501 tccggggcct cggcgagcgc acgcacgtcg gccgccggcg agccggcgcg cggccaggcc
     4561 tgctgcaccg cgcgctggtc gtggacgagg aacaggccgc ccgcgccccc cgcccagagc
     4621 cgcccggtcc ggtcgcgcag caccgcgcgc agcggcatgg tggcgaggcg ccgcgactcg
     4681 ccggtgccgg gatcgaagcg gtacaacccg gccgcggtgg cgtaccagag caccccgtgc
     4741 ggatcgcgca acaggccctg gcggctgccg gcggtgaccg gcgccagcgc gggtggcagg
     4801 gcgaggacgc gctggcggcg gccgctgcgc ggatccagcc gttcgaggcc ggctgccgtc
     4861 ccgacccaga ccgcgtcggg cccggcgagc acggcgagca cctgccgccc gcccgggccc
     4921 gcgtccgcgc cctcggcata gcggcggaaa aggccgctgg cgaggtcgag gcgggcgatg
     4981 tagtgcgcat aggtgccgac ccacagcccg ccggcatggt cgggggcgag ggcggtgacg
     5041 aagctgtcgg gcaggctgcg cggatcgcgc ggggcgcgcg ggtcttcgcg gaacaccgtg
     5101 tagtgctggc cgtcgaaccg gtgcagcccg ccctgcgtgc cgacccagac gaagccgtcg
     5161 tcgtcctggg cgagcgatgt caccgtgcgc tgcgcgaggc cgttgtcgcc cgtggcgcgc
     5221 tcgaaataga aatcccgcac ctccgcccgt gccggcggca gcatgcacag cagcgccagc
     5281 aggcatccgg cacgacgcca tgcggcggaa gcggggacgg gaaaacgcaa ggcaacgcac
     5341 caggcgggtg gtccgggcag tttagggcaa gcgtccggcg cggcaaggtg gctgcggcta
     5401 cactggacgc cccatccgtg atgcattgcc cgtgtcgatt cccctgcctt ccctcgacca
     5461 ggtggccggc gccgtgcgcg ccctcggcct cgcggtcccg ccgcccgaac tgcatggggc
     5521 gctgtgcggc tggctggccg gcggcggcac ggccgacgcg gactggccgg cgaaggtgct
     5581 ggccgacgat gccctgtcgc ccgtgccccc cggcggaccg ctcgcgcagc tgcaggagtc
     5641 cagtgcatcg cagttcgatg atcgcgactt cagcttcgag ctgctgttgc ccggcgtgga
     5701 cgcatcgctg gccgagcgca gcggcgccct gttcgactgg tgtcgcggct tcctcggcgg
     5761 cttcggtctc gcttccggcg ccgagccgcc gctgagcgag gagagccgcg aagcgctcgc
     5821 cgacatcgcc cgcctggccg cggccagccc gcaggaggaa ggcgacgagg aggacgagga
     5881 cgcgctcacc gagatcgagg aattcgtgcg cgtggccgcg ctgctgctgc acggcgactg
     5941 cgtgctggcg ccgcgccacc gccagcagtt caactgagga gggcctgcat gctgctcgat
     6001 cccgcccgtc cgcgttccgc cgggttgaag gcggccaccg gcatcgatgc gaaggagttc
     6061 gcgcgccgcc gccgccagct catgcgcatg gccggcgacg acgcgatcat cgtgctgccg
     6121 gccgcgcccg agcgcatcag cagccgcgac acccaccacc cgtaccgcca ggattccgac
     6181 ttctggtacc tcaccggctt cgccgaaccc gaggccgtgc tggtgctggt gcccggccgc
     6241 gcgcacggcg aggcgctgct gttctgccgc gagcgcgatc ccgagcgcga aggctgggac
     6301 ggcccgcgca gcggcccgga aggcgcggtc gaggcgttcg gcatggacga tgcctatccg
     6361 atcgccgacc tcgacgagat cctgcccggc ctgctggagg gccgctcgcg cgtctactac
     6421 cacttcggcc gcgacaccga gttcgacatc cagctgatcg gctggctcaa ccgcgtgcgc
     6481 gcgcaggtgc gcctgggcgc gcagccgccg cacgagttcc tcgagctcgg ccacctgctc
     6541 gacgagctgc gcctgttcaa gtcgcgcgac gagctcaagc tgatgcagcg cgccgccgac
     6601 atcagcgtcg ccgcgcacga ggccgtgatg cgcgccgcgc gcgccggcgt tcccgagcac
     6661 gcgctgcagg ccgagctcga atacgtgttc cgccgccacg acgcggtgcc tgcgtacggc
     6721 agcatcgtcg gtgccggcgc gaacgcctgc atcctgcact acgtcgccaa caacgcggtc
     6781 gcgcaggatg gcgagctcgt gctcgtcgac gccggcgccg aataccgcgg ctacgcgtcg
     6841 gacatcaccc gcaccttccc ggtcaacggc cgcttcacca gggagcagcg cgcgctgcac
     6901 gacctggtcc acgcggcgca ggccgcggcg ctcgcccggg cgcggccggg cgtcgcgtac
     6961 gaagccggcc accaggccgc ggtggaaacg ctgaccgaag ggctgctccg gttcggcctg
     7021 ctcaagggca cgctcgagca gaacatccgc gacgggcact acaagcgctt ctaccggcac
     7081 aagaccgggc actggctcgg cctgga
//
LOCUS       DATIQC010000447         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_346700, whole genome shotgun sequence.
ACCESSION   DATIQC010000447 DATIQC010000000
VERSION     DATIQC010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346700"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VLM17_09660"
     CDS             complement(<1..347)
                     /locus_tag="VLM17_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008215420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65850.1"
                     /translation="MPAPAPRLLPYRKPTEGRDYWLLDDALPDAMGVRERCLARTDWS
                     EGYPYKPEAWPGMRTIPALLPAELELLEARVRQLTGAAKLWVQAAPDGGHLNHNCVQV
                     VGEDECGPKPHTDS"
     gene            complement(361..1155)
                     /locus_tag="VLM17_09665"
     CDS             complement(361..1155)
                     /locus_tag="VLM17_09665"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008436090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR65851.1"
                     /translation="MPASHALVTGASSGIGAAIAREYARRGVPLVLTARRLDRLEALA
                     ATLRARVPVECIAADLADPSAPATLYAGLARRGVHVGHLVNNAGYGVPGRFLSSDWQA
                     HADFLQVLVASVCELTHRFLPAMEAAGEGRILNVASLAGLVPASAGHTLYGAAKAFVI
                     RFSESLAQETGPRGVHVTALCPGMTFTEFHDVNNMRARVSKLPSWLWQDADTVARLGL
                     DAVDRGDARCVPGGVNRALAALSKYLPEPAARALIASRSKDFRDAD"
     gene            1277..2029
                     /gene="tpiA"
                     /locus_tag="VLM17_09670"
     CDS             1277..2029
                     /gene="tpiA"
                     /locus_tag="VLM17_09670"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HSR65852.1"
                     /translation="MRRRIVAGNWKLHGDRAFARGLLDAVVATGAPAGVELVILPPLP
                     YLGELVAHYAGSALAFGAQDVSANEKGAYTGEVSAAMLADVGARYGLVGHSERRQYHH
                     EGSELVARKFLAARAAGLTPILCVGETLHQREAGQTEYAIEQQLQPLFELGGPGVFAG
                     AVVAYEPVWAIGTGRTASPEQAQEVHAFIRGEVAARDAKIADSLPILYGGSCKPDNAA
                     ALLAQPDVDGGLIGGASLVAADFLAIAAAAAP"
     gene            2041..>2403
                     /gene="secG"
                     /locus_tag="VLM17_09675"
     CDS             2041..>2403
                     /gene="secG"
                     /locus_tag="VLM17_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006381136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HSR65853.1"
                     /translation="MLMLILNVVYVLIAIAMVALILMQRGAGAQAGSGFGAGASATVF
                     GASGASNFLSKSTKWLAIAFFAISLFMAWYATHSAVQQQGPAQQDLGVMAQVPAAPAG
                     QPATPTGNGAVPAAPVQAA"
BASE COUNT          319 a          834 c          920 g          330 t
ORIGIN      
        1 gagtcggtgt gcggcttcgg cccgcattcg tcctcgccga ccacctgcac gcagttgtgg
       61 ttgaggtggc cgccgtcggg tgcggcctgc acccacagct tcgccgcgcc ggtgagctgg
      121 cgcaccctgg cctccagcag ctccagttcg gcgggcagca gcgcggggat cgtgcgcatg
      181 ccgggccagg cttccggctt gtacggatag ccctcggacc agtcggtgcg ggcgaggcag
      241 cgctcgcgca cccccatcgc gtcgggcagc gcgtcgtcga gcagccagta gtcgcggcct
      301 tcggtgggct tgcggtaggg cagcaggcgc ggggcggggg cgggcatgtc ggcgtgcctg
      361 tcaatcggcg tcgcggaagt ctttgctgcg gctggcgatc agcgcgcgcg cggcgggttc
      421 gggaaggtat ttcgagagcg ccgccagcgc gcggttgacg ccgcccggca cgcagcgcgc
      481 gtcgccgcga tcgacggcgt ccaggccgag gcgcgcgacc gtgtccgcgt cctgccacag
      541 ccacgacggc agcttcgaga cgcgtgcgcg catgttgttc acgtcgtgga attcggtgaa
      601 cgtcatgccg gggcagagcg cggtgacgtg caccccgcgc ggcccggttt cctgcgccag
      661 cgactcggaa aaacggatca cgaaggcctt ggccgccccg tacagggtgt ggccggccga
      721 tgccgggacg agtcccgcga gggaggcgac gttgaggatg cggccttcgc cggcggcttc
      781 catcgccggc aggaaccggt gcgtcagctc gcacaccgag gccaccagca cctgcaggaa
      841 gtcggcgtgg gcctgccagt cggaggacag gaaccgcccc ggcacgccgt agccggcatt
      901 gttgaccaga tggccgacat gcacgccgcg acgggcgagc ccggcgtaca gggtcgcggg
      961 cgcggacgga tcggccaggt cggcggcgat gcactcgacc ggcacccgcg cgcgcagcgt
     1021 cgcggcgagg gcctcgagcc ggtcgagccg gcgcgcggtc agcaccagcg gcacgccgcg
     1081 gcgcgcgtac tcgcgggcga tggcggcgcc gatgccgctg gaggcgccgg tgacgagggc
     1141 gtgggaggca ggcaggcggg cgggacgttc gtgggtctgc ggcgatcgta cagggccgcg
     1201 acgcacgctg tcccgcgtgg ttcaggccgc gcggcgactc cggtatcctt cgcggccgga
     1261 tcgcacaggg gcggacatgc gtcgcaggat cgtcgcgggt aactggaagc tgcacggcga
     1321 ccgcgccttc gcgcgcgggc tgctcgatgc ggtggtcgcc accggtgcgc cggcgggcgt
     1381 cgagctggtg atcctgccgc cgctgcccta cctcggcgaa ctggtcgcgc actatgccgg
     1441 cagcgcgctg gcgttcggtg cgcaggacgt cagcgccaac gagaagggag cctacacggg
     1501 cgaagtgtcg gcggcgatgc tggccgacgt cggcgcgcgc tacggcctgg tcggccattc
     1561 cgaacgccgc cagtaccacc atgagggcag cgagctggtc gcgcgcaagt tcctcgccgc
     1621 gcgcgccgcg ggcctgaccc cgatcctgtg cgtcggcgag accctgcacc agcgcgaggc
     1681 cggccagacc gaatacgcga tcgagcagca gctgcagccg ctgttcgagc tgggcgggcc
     1741 gggcgtgttc gccggcgcgg tggtggccta cgagccggtc tgggcgatcg gcaccggccg
     1801 caccgccagc ccggagcagg cgcaggaggt gcacgccttc atccgtggcg aagtcgccgc
     1861 ccgggatgct aaaatcgccg actcgctgcc gatcctgtac ggcggcagct gcaagcccga
     1921 caacgccgcc gccctgctcg cccagccgga cgtcgatggc gggctgatcg gcggggcatc
     1981 cctggtcgca gcggatttcc tcgccatcgc cgccgcggcg gcaccctaga gaatttcccg
     2041 atgttgatgc tgatcctcaa cgtggtgtac gtgctgatcg cgatcgcgat ggtcgcgctg
     2101 atcctgatgc agcgcggcgc cggtgcgcag gcgggctcgg gtttcggcgc gggcgcctcg
     2161 gcgaccgtgt tcggcgccag cggcgcgtcg aacttcctgt ccaagagcac caagtggctg
     2221 gcgatcgcgt tcttcgccat cagcctgttc atggcctggt acgccacgca cagcgccgtc
     2281 cagcagcagg gcccggcgca gcaggacctc ggcgtgatgg cgcaggtgcc ggccgccccg
     2341 gccggccagc ccgcgacgcc cacgggcaac ggcgccgtgc cggccgcacc ggtgcaggcg
     2401 gcg
//
LOCUS       DATIQC010000448         3312 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_64130, whole genome shotgun sequence.
ACCESSION   DATIQC010000448 DATIQC010000000
VERSION     DATIQC010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3312)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64130"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..934)
                     /gene="tsaD"
                     /locus_tag="VLM17_09680"
     CDS             complement(<1..934)
                     /gene="tsaD"
                     /locus_tag="VLM17_09680"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017161827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HSR65854.1"
                     /translation="MRVLGIETSCDETGVAVYDTARSGADGLRAQAVYSQVALHAEYG
                     GVVPELASRDHVRKLLPLVRQTLGEARLSVQDLDGVAYTAGPGLVGALLVGAGVARAL
                     AWALDLPAIGVHHMEGHLLAPLLEAPDLRPPFVALLVSGGHTQLVAVDAIGDYRLLGE
                     TLDDAAGEAFDKTAKLMGLPYPGGPQLARLAEQGRAGAFTFARPMTDRPGLDFSFSGL
                     KTQVLLAWQGSDRGEATRADVARGFEDAVVDTLAIKCARALDAAGCRTLVVAGGVGAN
                     QRLRAKLHEMAARRGGRVVFPRPALCTDNGAMIAF"
     gene            1048..1263
                     /gene="rpsU"
                     /locus_tag="VLM17_09685"
     CDS             1048..1263
                     /gene="rpsU"
                     /locus_tag="VLM17_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011235429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HSR65855.1"
                     /translation="MPSVKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQE
                     RKRKAAAAVKRQARRVSRDVTKRQRLY"
     gene            1434..1898
                     /locus_tag="VLM17_09690"
     CDS             1434..1898
                     /locus_tag="VLM17_09690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HSR65856.1"
                     /translation="MSLKTQLTDDMKAAMKGGDKTRLGVIRLINAAIKQKEVDERIEL
                     DDAQVIAVLEKMVKQRRDSVSQYDAAGREDLSRVERDEMAVIEHYLPAKMGEAELLDA
                     IDAAMTETGAAGLADIGKLMGVLKPRLAGRADMGDVSKLAKQRLSGQRTDAD"
     gene            2037..>3312
                     /gene="dnaG"
                     /locus_tag="VLM17_09695"
     CDS             2037..>3312
                     /gene="dnaG"
                     /locus_tag="VLM17_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HSR65857.1"
                     /translation="MARLSDAFIDDLLARTDIVEVIGTRVPLKRQGREYSARCPFHDE
                     RSPSFTVSPTKQFYHCFGCGAHGTAISFLMNYDRLEFLDAVEELARRAGVEVPRETRA
                     KSEDTETRDVFAALDAAARFFQKQLAGSAKAQAYVERRGLSADIVARYSIGYAPDGYS
                     GLKDALGTDGRRMALLERAGLFSKNDKGHVYDKFRDRLMFPIHDRRGRVIAFGGRVID
                     AEDSPKYLNSPETLLFHKGRELYGLWQARQAHTKLERLIVVEGYMDVVALAQHGVTQA
                     VATLGTATTPDHAELLFRNAADVYFCFDGDRAGRSAAWKAVESVLPRMKDGRQAFFLF
                     LTEGEDPDTIVRQEGADGFESRLAQATPLSAFFFAHMSQDVNLSSLDGKARLAERCKP
                     LLAQIPDGAFGDLMRQHLTELTGVGARASTPET"
BASE COUNT          505 a         1198 c         1167 g          442 t
ORIGIN      
        1 cgaaggcgat catcgcgccg ttgtcggtgc acagcgccgg gcgcgggaac accacccggc
       61 cgccgcgccg ggccgccatc tcgtgcagct tcgcccgcag gcgctggttg gcgccgacgc
      121 cgccggccac caccagcgtc cggcagccgg ccgcgtccag cgcgcgggcg cacttgatcg
      181 ccagggtatc gaccaccgcg tcctcgaagc cgcgggcgac gtcggcgcgg gtcgcctcgc
      241 cccggtcgct gccctgccag gccagcagca cctgggtctt gagcccgctg aagctgaagt
      301 cgaggccggg ccggtcggtc atcggccggg cgaacgtgaa cgcgcccgcc cggccctgct
      361 cggccagccg ggccagctgc ggcccgcccg ggtagggcag gcccatcagc ttggcggtct
      421 tgtcgaaggc ctcgccggcg gcgtcgtcca gggtctcgcc gagcaggcgg tagtcgccga
      481 tggcatcgac cgcgaccagc tgggtgtgcc cgccggacac cagcagggcg acgaacggcg
      541 ggcgcaggtc cggcgcctcc aggagcggcg ccagcaggtg gccttccatg tggtgcaccc
      601 cgatcgccgg gaggtccagt gcccaggcca gcgcccgggc caccccggcg ccgaccagga
      661 gggcgccgac caggccgggg ccggcggtat aggcgacccc gtcgaggtcc tgcaccgaca
      721 gccgcgcctc gccgagggtc tgccggacca gcggcagcag cttgcgcacg tggtcgcggc
      781 tggccagctc gggcaccacc ccgccgtact cggcgtgcag ggcgacctgg ctgtacaccg
      841 cctgcgcgcg caggccgtcg gccccggaac gggcggtgtc gtagaccgcc acgccggtct
      901 cgtcgcagga ggtttcgatg ccgaggacgc gcatgggcgg aggatcgttc gggggatggg
      961 ggtcggcggt tgcatcggcc gctggcccgc cgctatcata cgcggcttgc ccggtccgac
     1021 cgggccggtc cacctacgag atcccgtatg ccgagcgtca aagtccgcga gaacgagccc
     1081 ttcgagtttg ccctgcgccg cttcaagcgc acctgcgaga aggccggcgt cctggccgaa
     1141 acccgcaagc gcgagttcta cgagaagccg acccaggagc gcaagcgcaa ggccgccgcc
     1201 gcggtgaagc gccaggcccg ccgcgtgtcg cgcgacgtca ccaagcgcca gcggctgtac
     1261 tgatcgcggg tccatccgca agaggccggc cctccatggc cggactcttc cagggacgac
     1321 cacctgaagc cggcacgcgc aagcggttgc cggcttcggc gtttctggac ggtcgcctca
     1381 cccgcgcttg aggtcgtttc ccgtatccct cttccattcg cagcgagccc gccatgagcc
     1441 tcaagaccca gctcaccgac gacatgaagg ccgccatgaa gggcggcgac aagacccggc
     1501 tcggcgtgat ccgcctgatc aacgcggcga tcaagcagaa ggaggtcgac gagcgcatcg
     1561 aactcgacga cgcccaggtg atcgcggtgc tggagaagat ggtcaagcag cgccgcgatt
     1621 cggtctcgca gtacgacgcc gcgggccgcg aggacctgtc tcgggtcgag cgcgacgaga
     1681 tggcggtgat cgagcactac ctgccggcga agatgggcga ggcggaactt ctcgatgcca
     1741 tcgacgccgc gatgaccgaa accggtgccg ccggcctggc cgacatcggc aagctgatgg
     1801 gcgtgctcaa gccgcgcctc gccggccgcg ccgacatggg cgacgtgtcc aagctggcga
     1861 agcagcgcct gagcggccag cgcaccgacg ccgactgagc ggctgccccc ctctcccgcg
     1921 tgcgggagag ggccggggtg agggcaggca accgcgaggc ttccctcgtc cggcgctgcg
     1981 cgccaccttt tcccgcaggc gggagaaggg aacgtccgcg ccctatcatt gaccgcatgg
     2041 cccgcctctc cgacgccttc atcgacgacc tgctcgcgcg caccgacatc gtcgaggtga
     2101 tcggtacgcg cgtgccgctg aagcggcagg ggcgcgagta ctcggcgcgc tgcccgttcc
     2161 acgacgagcg ctcgccgtcg ttcacggtgt cgccgaccaa gcagttctac cactgcttcg
     2221 gctgcggcgc gcacggcacc gcgatttcgt tcctgatgaa ctacgaccgc ctcgagttcc
     2281 tcgacgcggt cgaggagctc gcgcgccgcg ccggcgtcga ggtgccgcgc gagacccgcg
     2341 cgaaaagcga ggacaccgag acgcgcgacg tgttcgccgc gctcgacgcg gccgcccgct
     2401 tcttccagaa gcagctcgcc ggcagcgcga aggcgcaggc ctacgtcgaa cgccgcgggc
     2461 tcagcgcgga catcgtggcg cgctattcga tcggctatgc gcccgacggc tacagcggcc
     2521 tcaaggacgc gctcggcacc gatgggcgac gcatggcgtt gctcgagcgc gcgggcctgt
     2581 tctcgaagaa cgacaagggc catgtctacg acaagttccg cgaccgcctg atgttcccga
     2641 tccacgaccg ccgcgggcgc gtgatcgcct tcggcggccg cgtgatcgac gccgaggatt
     2701 cgccgaagta cctcaactcg ccggagacgc tgctcttcca caagggccgc gaactgtacg
     2761 gcctgtggca ggcgcgccag gcgcacacca agctggagcg gctgatcgtg gtcgagggct
     2821 acatggacgt ggtcgcgctc gcgcagcatg gcgtgacgca ggcggtggcg accctcggca
     2881 ccgcgaccac gcccgaccat gccgagctgc tgttccgcaa cgccgccgac gtgtatttct
     2941 gcttcgacgg cgaccgcgcc gggcgcagcg ccgcgtggaa ggcggtggaa tcggtgctgc
     3001 cgcggatgaa ggatgggcgc caggcgttct tcctgttcct gaccgaaggc gaggatcccg
     3061 acaccatcgt gcgccaggaa ggcgccgacg gtttcgagtc gcgcctcgcg caggcgacgc
     3121 cgctgtcggc gttcttcttc gcgcacatgt cgcaggacgt gaacctgtcc agcctcgacg
     3181 gcaaggcgcg cctggccgag cgctgcaagc cgctgctggc gcagatcccc gacggggcct
     3241 tcggcgacct gatgcgccag cacctgaccg agctcaccgg cgtcggcgcg cgagcgagca
     3301 cgcccgaaac gc
//
LOCUS       DATIQC010000449         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_99951, whole genome shotgun sequence.
ACCESSION   DATIQC010000449 DATIQC010000000
VERSION     DATIQC010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99951"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..502)
                     /locus_tag="VLM17_09700"
     CDS             complement(<1..502)
                     /locus_tag="VLM17_09700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65858.1"
                     /translation="MTRRVRLLSAVLLACAAFPALAHHGQDFLLVESPTVPHPGDAYL
                     LADLGVALGDAEEQAGFEPALLLGLAPRVAFEVHAHTEKLVGEGWRYEATAPSLHVLF
                     TDPGREEGFKAGLSAEYELARAAGEPDNLEVRLAFEHGDARRKAGANLVYHREQGEHG
                     RLGAVLG"
     gene            complement(582..1127)
                     /locus_tag="VLM17_09705"
     CDS             complement(582..1127)
                     /locus_tag="VLM17_09705"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HSR65859.1"
                     /translation="MSERKIVHEGRYLRMVVQGHWEYVERTHAGGLAAIIIAVTPDDR
                     ILFVEQFRIPLQQKTIEMPAGLVGDVDAGESIEQSAIRELEEETGWRAAHAQVLLVGP
                     TSAGLTSERIAFVRATGLTRTGDGGGDESEDIVVHAVPRAQAPAWLMQQGREGYAVDA
                     KLWAGLWLVDRDPDGTPAHRA"
     gene            complement(1132..1575)
                     /locus_tag="VLM17_09710"
                     /pseudo
     CDS             complement(1132..1575)
                     /locus_tag="VLM17_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156966.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
BASE COUNT          205 a          562 c          588 g          220 t
ORIGIN      
        1 tgcccagcac ggcgcccaga cggccgtgct caccctgttc gcggtgatag accaggttgg
       61 ctccggcctt gcgccgcgcg tcgccgtgtt cgaacgcaag ccgcacctcg aggttgtcgg
      121 gttcgccggc cgcgcgcgcc agttcgtact cggcgctgag tccggccttg aatccctcct
      181 cgcgcccggg gtcggtgaac agcacgtgca gcgacggcgc ggtggcttcg taccgccagc
      241 cttcgccgac gagcttctcg gtgtgcgcgt gcacttcgaa ggccacccgc ggcgccagcc
      301 cgagcagcag cgccggctcg aaacccgcct gttcctccgc atcccccagg gccacgccga
      361 ggtcggccag caggtaggca tcgccgggat gcggcacggt ggggctctcg acgagcagga
      421 agtcctggcc gtggtgggcg agcgcgggga aggccgcgca ggcgagcagg acggcggaga
      481 gcaggcggac gcgacgggtc atcgggaggg agtggcggca ggagaagcaa ggatggcggc
      541 cggcgcactc gcgcgccttg atcccggtcg gttccgcatg gtcaggcgcg gtgtgccggg
      601 gtgccgtccg gatcgcggtc gaccagccac aggccggccc acagcttggc gtcgaccgca
      661 tatccttcgc ggccctgctg catcagccag gcgggcgcct gcgcgcgcgg caccgcgtgc
      721 acgacgatgt cctcggactc gtcgccgccg ccgtcgccgg tcctggtgag gccggtggcg
      781 cgcacgaagg cgatgcgctc gctggtcagt cccgcggagg tcggaccgac cagcagcacc
      841 tgcgcgtgcg ccgcgcgcca gccggtctcc tcctccagtt cgcggatcgc cgactgctcg
      901 atcgattcgc cggcgtcgac gtcgccgacc agccccgccg gcatctcgat ggttttctgc
      961 tgcagcggga tgcggaactg ctcgacgaac aggatgcggt cgtccggcgt caccgcgatg
     1021 atgatcgcgg cgaggccgcc ggcgtgggtg cgttcgacgt attcccagtg gccctgcacg
     1081 accatgcgca ggtaccggcc ttcgtggacg atcttgcgtt cgctcatgcg gcgcgatgct
     1141 agccggcggc cgtgacgggc acgccaagtc ccgcggcttc gtgcaggcga cgacgggtga
     1201 gcgggccgaa gcgcagcgtg tcgcacagcg ccgacaggcg cgggccatcg accggagcgc
     1261 gcgcgaagtc ggcgtgcgcg agcggtgcgt ccagcgcgat cgtggtcagt cgccgccaca
     1321 gcagcacgcg ctcgcgctcc tcgcgcaggc gcgcggcgat gccggccgcg ccgcgcaggc
     1381 gcaggaagcc gacctcgtcc acccgcgcga gcaggacgtc gaggctgccg aagtgcgcga
     1441 gcagctgcgc cgcggtcttc gcgccgacgc cctgcacgcc ggggatgttg tcgaccgcgt
     1501 cgccggtgag cgcgaggtag tcggcgatct ggtgcgcgtg cacgccgtgg cgcgccttga
     1561 cgcccgcggt acccc
//
LOCUS       DATIQC010000450         4285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_346857, whole genome shotgun sequence.
ACCESSION   DATIQC010000450 DATIQC010000000
VERSION     DATIQC010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346857"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1500
                     /gene="sdhA"
                     /locus_tag="VLM17_09715"
     CDS             <1..1500
                     /gene="sdhA"
                     /locus_tag="VLM17_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008434627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HSR65860.1"
                     /translation="KSVYELEHYGVPFSRTEEGKIYQRPFGGHTTEFGEGPPVQRTCA
                     AADRTGHAILHTLYGQSLKNNAEFYIEYFAIDLIITDGACTGVVAWKLDDGTIHVFNA
                     KMVVLATGGYGRAYFSATSAHTCTGDGGGMALRAGLGMQDMEFVQFHPTGIYGAGVLI
                     TEGVRGEGGILRNSSGERFMERYAPNAKDLASRDVVSRSMTIEIREGRGVGPQKDHIH
                     LDLTHLDPRDIHEKLPGISESARIFANVDVTKQPIPVLPTVHYNMGGIPTNYHGEVVT
                     LKNGNPDQVVPGLYAIGEAACVSVHGANRLGSNSLLDLVVFGRAVANRCAETIQTGKP
                     HGRLAADACDKALANLDRLRNASGGTPTAVIRDNMQRTMQADAAVFRTGETLADGVHK
                     IRDIHASFADVRVSDRSLVWNSDLIETFELQNLLGQALATIVSAENRKESRGAHARED
                     FPERDDANWQKHTLCWVDEQGNTRIDYRPVHMYTLDDEVEVVPPKPRVY"
     gene            1513..2298
                     /locus_tag="VLM17_09720"
     CDS             1513..2298
                     /locus_tag="VLM17_09720"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017118698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HSR65861.1"
                     /translation="MAEFTLPRNSKIQPGRHFPAAAGATRVRRFKVYRWSPDDGRNPS
                     VDTYEVDLDKCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGTNTLACTK
                     AIDDCGKGEVPIYPLPHMPVVKDLVPDLTHFYAQYASIKPWIRTQSAPPPDRERLQSK
                     EDRAKLDGLYECILCACCSTSCPSYWWNGDRYLGPAILLQAYRWVIDSRDEDTGARLD
                     DLEDPFKLYRCHTIMNCTRTCPKGLNPAKAIGELKQLMLARRG"
     gene            2487..2912
                     /locus_tag="VLM17_09725"
     CDS             2487..2912
                     /locus_tag="VLM17_09725"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HSR65862.1"
                     /translation="MTDVSRILLPAFAMAALTFVVWWRMYLMRVGEMKRERIHPQSVA
                     TSAEMAARVKDTRAADNFRNLFELPVLFYMALVVAALTGQANAATLGLAWGFVALRIV
                     HSAIHCTYNKVMHRFPAYLAGGLVLWALWGVLAVGLLRG"
     gene            2909..3160
                     /locus_tag="VLM17_09730"
     CDS             2909..3160
                     /locus_tag="VLM17_09730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HSR65863.1"
                     /translation="MSDEAAELRRLRWRCRRGMRELDRLLERYLDRRWPAASEPERGV
                     FLRLLDCEDDRLWRWFLGHETPPDADLAQLVQHIRDLPA"
     gene            3111..3548
                     /locus_tag="VLM17_09735"
     CDS             3111..3548
                     /locus_tag="VLM17_09735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65864.1"
                     /translation="MPTSPSWSSTSAICRLEWRPSPALSLALFALGLLAACSVIESEI
                     PRRVAWPLAAVAIAHGARLGVRHRRQPSRGFCWVPGRPPELDGAPLDAARLHWRGPLA
                     FLRWRDAGGCTRRLAWWPDVLPRAARRELKLVAQAARDTPLDA"
     gene            3601..>4285
                     /locus_tag="VLM17_09740"
     CDS             3601..>4285
                     /locus_tag="VLM17_09740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HSR65865.1"
                     /translation="MFKPIPVAIGLRYLRAKRRNGFISFISMASILGIAIGVAALITT
                     LAVMSGFQREIRDRMLQMAAHATITADGVPMDNWRQAVAEAYRDGRVAGAAPYIEKEA
                     LLQGTQNQPAIVRGILPAEEGRVSVLAKKMVQGRLDDLKPGSFNIVLGQELALWLGVN
                     VGDKVVVTVADFRSTPVGAMPRLKRFTVSGVFEAGYQEYDKGLAVANLEDMQRVLRMD
                     GGATGVRLRL"
BASE COUNT          695 a         1508 c         1431 g          651 t
ORIGIN      
        1 aagtcggtgt acgagctgga acattacggg gtgccgtttt cccgcacgga agagggcaag
       61 atctaccagc gcccctttgg cggccacacg accgaattcg gcgaaggccc gccggtgcag
      121 cgcacctgtg ccgccgccga ccggacgggg catgcgatcc tgcacacgct gtatggccaa
      181 agccttaaga acaatgcgga attctacatc gaatatttcg cgatcgacct gatcatcacc
      241 gacggggcct gcaccggggt tgtcgcttgg aagctggatg acggcacgat ccatgtcttc
      301 aacgccaaga tggtggtgct ggcgacgggc ggctatggcc gggcctattt cagtgcgacc
      361 tcggcccata cctgcaccgg cgacggcggc ggcatggcgc tgcgcgccgg cctcggcatg
      421 caggacatgg aattcgtgca gttccacccg accggcatct acggcgcggg cgtgctgatc
      481 accgagggcg tccgcggcga aggcggcatc ctgcgcaaca gcagcggcga gcgcttcatg
      541 gaacgctacg cgccgaacgc gaaggacctg gcgtcgcgcg acgtcgtcag ccgttcgatg
      601 acgatcgaga tccgcgaagg ccgcggcgtg ggcccgcaga aggaccacat ccacctcgac
      661 ctcacccacc tcgacccgag ggacatccac gagaagctgc cggggatctc cgagagcgcg
      721 cgcatcttcg ccaacgtgga cgtcaccaag cagccaatcc cggtgctgcc gaccgtgcac
      781 tacaacatgg gcggcatccc gaccaactac cacggcgaag tcgtgaccct gaagaacggc
      841 aacccggacc aggtcgtgcc cgggctgtac gcgatcggcg aagccgcctg cgtgtcggtg
      901 catggcgcca accgcctggg gtccaactcg ctgctcgacc tcgtcgtgtt cggccgcgcg
      961 gtcgccaacc gttgcgccga aaccatccag accggcaagc cgcacggccg cctggcggct
     1021 gacgcctgcg acaaggccct cgccaacctc gaccgcctgc gcaacgccag cggcggcacc
     1081 ccgacggcgg tgatccgcga caacatgcag cgcaccatgc aggccgacgc cgcggtgttc
     1141 cgcaccggcg agacgctggc cgatggcgtg cacaagatcc gcgacatcca tgcctcgttc
     1201 gccgacgtgc gcgtcagcga ccgctcgctg gtgtggaact cggacctgat cgagaccttc
     1261 gagctgcaga acctgctcgg ccaggcgttg gcgacgatcg tgtctgcgga gaaccgcaag
     1321 gagtcgcgcg gcgcgcatgc gcgcgaggac ttcccggagc gcgacgacgc caattggcag
     1381 aagcacacgc tctgctgggt cgacgagcag ggcaacaccc gcatcgatta ccggccggtg
     1441 cacatgtaca cgctcgacga cgaagtcgaa gtcgtgccgc ccaagccgcg cgtctactga
     1501 ccggacttcg ccatggccga attcaccctt cccaggaact cgaagatcca gcccggccgc
     1561 cacttcccgg cggccgcggg cgccacgcgg gtgcgccgct tcaaggtgta ccgctggagt
     1621 ccggacgatg gccgcaaccc gagcgtcgac acctacgagg tcgacctcga caagtgcggg
     1681 ccgatggtcc tcgacgcgct gatcaagatc aagaacgaga tcgacccgac gctgacgttc
     1741 cgccgctcct gccgcgaggg catctgcggc tcgtgcgcga tgaacatcga cggtaccaac
     1801 acgctcgcct gcaccaaggc gatcgacgac tgcggcaagg gcgaggtgcc gatctatccg
     1861 ctgccgcaca tgccggtggt gaaggacctc gtccccgacc tcacgcactt ctacgcgcag
     1921 tacgcctcga tcaagccgtg gatccgcacc cagagcgcgc cgccgcctga ccgcgagcgc
     1981 ctgcagtcga aggaggaccg cgccaagctc gacggcctgt acgagtgcat cctgtgcgcg
     2041 tgctgctcga cgtcctgccc gagctactgg tggaacggcg accgctacct cggcccggcg
     2101 atcctgctgc aggcctaccg ctgggtgatc gactcgcgcg acgaggacac cggcgcgcgc
     2161 ctggacgacc tcgaggatcc gttcaagctg taccgttgcc acaccatcat gaactgcacg
     2221 cggacctgcc cgaagggatt gaatccggcg aaggcgatcg gcgagctgaa gcagttgatg
     2281 ctggccaggc gcggctaggc cctgccgatc ccgtccaccc gatcctttcg agcgggccgg
     2341 ccgtttgacg atggatccgg cttccgccgg atgacgacgg gccgggccgc ggtccgaccg
     2401 gggatccgtc gctggtcggg atccctccag gcgccggccc ccgatggtcc cggtctcccc
     2461 cgggacgacg aaggagcgac tgcccgatga cggacgtttc ccggatcttg cttcccgctt
     2521 tcgccatggc cgcgctcacc ttcgtggtct ggtggcgcat gtacctcatg cgcgtcggcg
     2581 agatgaagcg cgagcgcatc catccgcaat cggtcgccac gtcggccgag atggccgcgc
     2641 gggtgaagga cacgcgggcg gccgacaatt tccgcaacct gttcgagctg ccggtgctgt
     2701 tctacatggc gctcgtcgtc gccgcgctca ccgggcaggc caatgcggca accctcggcc
     2761 tcgcatgggg tttcgtggcg ctgcgcatcg tccacagcgc gatccactgc acctacaaca
     2821 aggtgatgca ccgcttcccc gcgtacctcg ccggcgggct ggtgttgtgg gccttgtggg
     2881 gcgtgctggc ggtcgggctg ctgcgcggat gagcgacgaa gcggccgaac tgcgccgcct
     2941 gcgctggcgc tgccggcgcg gcatgcgcga actcgaccgg ctgctcgaac gctacctcga
     3001 ccgacgctgg ccggcggcat ccgagccgga gcgcggcgtt ttcctacggt tgctggattg
     3061 cgaggacgat aggctctggc gctggttcct cggccacgag acgccgcccg atgccgacct
     3121 cgcccagctg gtccagcaca tccgcgatct gccggcttga atggcggccg tcgccggccc
     3181 tgtcgctcgc gctcttcgcg ctcggcctgc tcgctgcgtg ttcggtgatc gaaagcgaga
     3241 tcccgcgtcg cgtcgcttgg ccgctcgcgg ccgtggcgat cgcccatgga gcgcggctgg
     3301 gcgttcgaca tcgccgccag ccttcgcgcg ggttctgctg ggtgccgggc cggccgccgg
     3361 aactcgacgg cgcgcccctc gacgccgccc ggctgcactg gcgcggcccg ctcgccttcc
     3421 tgcgctggcg cgatgccggt ggctgcacgc ggaggctggc ctggtggccc gacgtactgc
     3481 cgcgcgccgc ccggcgtgaa ctgaagctgg tggcgcaggc ggcgcgtgat acgcccctcg
     3541 acgcttagat ggcaccatag ccgctgcctg gccgagccga gtcgcatgct cttcgaccga
     3601 atgttcaaac ccatccccgt cgccatcggc ttgcgctacc tgcgcgccaa gcgccgcaac
     3661 ggcttcatct ccttcatctc gatggcgtcc atcctcggca tcgccatcgg cgtcgccgcg
     3721 ctgatcacga cgctggcggt gatgagcggg ttccagcgcg agatccgcga ccgcatgctg
     3781 cagatggccg cgcacgccac catcaccgcc gacggcgtgc cgatggacaa ctggcgccag
     3841 gccgtcgccg aggcataccg cgacgggcgc gtcgccggcg ccgccccgta catcgaaaag
     3901 gaagcgctgc tgcagggaac gcagaaccag ccggcgatcg tccgcggcat cctgccggcg
     3961 gaagagggca gggtgtcggt gctggcgaag aagatggtgc aggggcgcct cgacgacctg
     4021 aagcccggca gcttcaacat cgtgctcggg caggaactgg cgctgtggct cggcgtcaac
     4081 gtcggcgaca aggtcgtggt gacggtcgcc gacttccgca gcacgccggt gggggcgatg
     4141 ccgcggctga agcgcttcac tgtcagcggc gtcttcgaag ccggctacca ggaatacgac
     4201 aagggcctcg ccgtcgccaa cctcgaggac atgcagcggg tgctgcgcat ggatggcggg
     4261 gcgaccggcg tgcgcctgcg cctgc
//
LOCUS       DATIQC010000451         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_700608, whole genome shotgun sequence.
ACCESSION   DATIQC010000451 DATIQC010000000
VERSION     DATIQC010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_700608"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1443)
                     /locus_tag="VLM17_09745"
     CDS             complement(<1..1443)
                     /locus_tag="VLM17_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012438074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR65866.1"
                     /translation="MAITAPLAPLRAHAGARRTHGLDDATVARFAATHPDLVEAIDAA
                     AAEYARVRDEFPELLDMDEDAQTIEVQSGFVNFYAHDAANPYVALAARGPWLVTLKGA
                     VIYDTGGYGMLGLGHTPQAVLEAMARPQAMANIMTPSVSQLRFARAMRREIGQTRGGC
                     PYSAFLCLNSGSESVSLAARIVDANAKTMTDPGARHAGRTIKRLVVKGAFHGRTERPA
                     LYSDSSRKTYVQHLASFRGEDSVIAVPPYDVDALRKAFADADANGWFIEAMFLEPVMG
                     EGDPGRSVPVAYYTLARELTRAHGSLLLVDSIQAGLRATGYLSIVDYPGFEQVDAPDM
                     ETYSKALNAAQYPLSVLAVSEAAKAIYKRGLYGNTMTANPRALDVACAVLGQLTPGLR
                     ENIRQRGRDAVVMLEALKEELGGLITKVQGTGLLFSCELSKEFKGYGIGSTEEWMRER
                     GLGVIHGGENSLRFTPHFAIDADELGLVVSM"
     gene            1564..1995
                     /locus_tag="VLM17_09750"
     CDS             1564..1995
                     /locus_tag="VLM17_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003489775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HSR65867.1"
                     /translation="MPLSTADLQLLSLLRENARASTAELARRLRLSRTTVQSRIERLE
                     RQGVIAGYTVRVDDEAERGHIRAHIMITVLPRQMAAVVRALHAMPQVRALHSVSGPFD
                     LVALGVVPTIGGMDELTDRIGAVEGVERTTSSIILSAKFER"
     gene            2086..>2620
                     /locus_tag="VLM17_09755"
     CDS             2086..>2620
                     /locus_tag="VLM17_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HSR65868.1"
                     /translation="MKKSDFHYELPAELIAQAPLAERSASRLLVVPPAPMPFADRQVR
                     DLPDLLQPGDLLVFNDTRVIPARLFGQKATGGRVEILIERLLPGEEARAQLGVSKPPQ
                     PGSRIALDAGGEAEVLGREDGFYHLRFHVAGGLHDWLEHAGRLPLPPYIQRAPGAEDA
                     ARYQTVFARAAGAVAAPT"
BASE COUNT          363 a          912 c          954 g          391 t
ORIGIN      
        1 catcgaaacg accagtccga gctcgtcggc gtcgatcgcg aagtgcgggg tgaaacgcag
       61 cgagttctcg ccaccgtgga tcacgccgag gccacgctcg cgcatccact cctcggtcga
      121 gccgatgccg tagcccttga actccttcga aagctcgcag gagaacagca ggccggtgcc
      181 ctggaccttg gtgatcaggc cgccgagttc ttccttgagc gcctcgagca tcacgaccgc
      241 atccctgccg cgctgccgga tgttctcgcg cagccccggc gtgagctggc cgagcaccgc
      301 gcaggccacg tccagcgcgc gcgggttggc ggtcatcgtg ttgccgtaca ggccgcgctt
      361 gtagatcgcc ttggccgcct cgctcaccgc cagcaccgag agcgggtatt gcgccgcgtt
      421 gagcgccttc gaataggttt ccatgtccgg cgcgtcgacc tgctcgaagc cggggtagtc
      481 gacgatcgac aggtagccgg tcgcgcgcag gccggcctgg atcgaatcga ccagcagcag
      541 gctgccgtgg gcgcgggtca gctcgcgcgc aagcgtgtag taggcgaccg gcacgctgcg
      601 gccggggtcg ccttcgccca tcaccggctc gaggaacatc gcctcgatga accagccgtt
      661 ggcgtcggcg tcggcgaagg ccttgcgcag cgcgtccacg tcgtagggcg gcaccgcgat
      721 caccgaatcc tcgccgcgga agctggccag gtgctgcacg taggtcttgc ggctggaatc
      781 cgagtacagg gccggacgct cggtgcggcc gtggaacgcg cccttgacca ccaggcgctt
      841 gatcgtgcgg ccggcgtggc gcgcgcccgg atcggtcatg gtcttggcat tggcgtcgac
      901 gatgcgcgcc gcgagcgaga ccgactcgga acccgagttc aggcacagga aggcgctgta
      961 cggacagccg ccgcgggtct ggccgatctc cctgcgcatc gcgcgcgcga agcgcagctg
     1021 cgacacgctc ggggtcatga tgttggccat cgcctgcggg cgggccattg cctccagcac
     1081 cgcctgcggg gtgtggccga gcccgagcat gccgtagccg ccggtgtcgt agatcaccgc
     1141 gcccttgagg gtgacgagcc aggggccgcg cgcggccagc gccacgtagg ggttggcggc
     1201 atcgtgcgcg tagaagttga cgaagccgga ctgcacttcg atcgtctgcg cgtcctcgtc
     1261 catgtccagc agttcgggga actcgtcgcg gacgcgggcg tactcggccg ccgcggcgtc
     1321 gatcgcctcg acgaggtccg gatgggtggc cgcgaaccgg gcgacggtgg cgtcgtcgag
     1381 gccgtgggtg cggcgggcgc cggcgtgggc gcgcagcggc gccagggggg cggtgatggc
     1441 catgggatcc tccggcggaa gcgttgaagc ttcctattat cccgatcgga tcggcgatag
     1501 acagcggcga tccgcgcgga ataacatcct gtttcgtcga ttcgacgaaa gtggttggtc
     1561 actatgccgc tcagcaccgc cgacctgcag ttgctctcgc tgctccgcga gaacgcccgc
     1621 gcctccaccg ccgagcttgc ccgccggctc cggctctcgc gcaccaccgt gcagagccgg
     1681 atcgagcggc tggagcggca gggcgtgatc gccggctata ccgtgcgcgt cgacgacgag
     1741 gccgagcgcg gccacatccg cgcccacatc atgatcaccg tcctgccgcg gcagatggcc
     1801 gcggtggtgc gggcgctgca cgcgatgccg caggtgcgcg cgctgcattc ggtcagcggg
     1861 ccgttcgacc tggtcgccct cggcgtggtg ccgacgatcg gcgggatgga cgaactcacc
     1921 gaccggatcg gcgcggtgga gggggtggag cggaccacgt cgtcgatcat cctgtcggcg
     1981 aagttcgagc ggtagcgcgg gttcgaccgg ccgcacggca gccgcgaccg ccgggggcgc
     2041 cccgcgggcc gcctacaatg cgcggtttcc ggccgtgccc ctgtcttgaa gaagtccgac
     2101 ttccactacg agctgccggc cgaactgatc gcgcaggcgc cgctggccga gcgctcggcc
     2161 agccgcctgc tggtggtccc gccggcgccc atgccgttcg cggatcgcca ggtgcgcgac
     2221 ctccccgacc tgctgcagcc cggcgacctg ctggtgttca acgacacccg ggtgatcccg
     2281 gcgcggctgt tcgggcagaa ggcgaccggc ggccgggtgg agatcctgat cgagcgcctg
     2341 ctgccaggcg aggaggcgcg cgcgcagctc ggcgtgagca agccgccgca gcccggcagc
     2401 cgcatcgcgc tcgatgccgg cggcgaggcc gaggtgctcg ggcgcgagga cggcttctac
     2461 cacctgcgct tccatgtcgc cggcggcctg cacgactggc tcgagcacgc cggccggctg
     2521 cccttgccgc cctacatcca gcgcgcgccc ggcgcggagg atgcggcgcg ctaccagacc
     2581 gtgttcgcgc gcgcggccgg cgcggtcgcg gcgccgaccg
//
LOCUS       DATIQC010000452         4962 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_100083, whole genome shotgun sequence.
ACCESSION   DATIQC010000452 DATIQC010000000
VERSION     DATIQC010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4962
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100083"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2000)
                     /locus_tag="VLM17_09760"
     CDS             complement(<1..2000)
                     /locus_tag="VLM17_09760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009597569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HSR65869.1"
                     /translation="MPHGTDTALRLMIVDDSVEDAEAIVSMLRNAGIAVRPLRPASAD
                     EMVEMVGEQAIDLVLAAQQGKAVAIDEVLQLVKSSGKDLPVVAVAEYVDDVILTQALA
                     GGVRALALRHKPQQLLGVVRTEWADLEARRALRRLEAQVRETERRCDALIESSRDPIA
                     YVHEGMHIRANAAYLEMFGYESFDEVEGMSLLDLVAPQHVEGFKQLLKSLSKGEAPPP
                     RYELKARDLEGNDFPAVMEFTSALYEGEPCLQVVFRRQEMDPELAREVEELRQRDQTT
                     GLLNRPTFLRALEDAVADAAQRQAQYGLLLLEPDHYQRLLQEIGLDSADAMLAAIAER
                     LRGVLGARLEDGSAQAARFGEHSLAVLMRGDHTVTTALAEGIREAFASHVFDIADRSS
                     VITSSIGGVQIGEKIASVTQVLAKANQGVQSSIGVGGNRFEIFDPSAVDRAEEERIHA
                     WVARLREALDHNRFVLHYQPVISLQGEPGATYETYVRLDAGAGETVPPLSFLQIAEEH
                     GLLWEIDRWVVQRAIAVIGERVRVGTPTTLLVKITQASLVDEALPKFIGEQLAAHGVD
                     GSLLVLQVPEAKVFTNLRAAQEFVAAVARHGCRVALEQFGAGLDSFQLLSHFDPAFVK
                     LDRGFMEELPKNPGNQKRVKEIADKVRGLGIRSIAEFVQDAA"
     gene            complement(2198..3226)
                     /gene="epmB"
                     /locus_tag="VLM17_09765"
     CDS             complement(2198..3226)
                     /gene="epmB"
                     /locus_tag="VLM17_09765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011408738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0072581 - protein-N6-(L-lysyl)-L-lysine
                     modification to protein-N6-(beta-lysyl)-L-lysine [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HSR65870.1"
                     /translation="MIPAASPALQPAGAPHAGAADWKRLWRDAVRDPRELLALVGLPR
                     LAARLSESAATQFPVRVPRGFVARMRPGDPHDPLLRQVLPLDDEERIVPGFGLDAVGD
                     GAARAGAGVIRKYRGRALLVATGSCAVHCRYCFRRHFPYAEETAAAQGWREAVALVAG
                     DPSIEEVILSGGDPLSLATSKLSELTDALAAIPHLVRLRIHSRLPVVLPERVDAGLLE
                     WLRALPWPVAFVLHANHANEFDAHVDAALAQLRAAGAILLNQAVLLRGVNDSVDALAA
                     LSSRAWAAGVLPYYLHQLDRVAGTAHFEVPDDEARALHRALAARLSGYLVPRLVREVA
                     GDTGKRPL"
     gene            3329..3895
                     /gene="efp"
                     /locus_tag="VLM17_09770"
     CDS             3329..3895
                     /gene="efp"
                     /locus_tag="VLM17_09770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019301003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HSR65871.1"
                     /translation="MASLGMNDVKTGQKILVNNEPCVITETEYVKPGKGQAFTRVKYR
                     NIKSGRVVELTMKATDSLEVADVVDTDMQFLYADGEYWHFMNQESFEQFQADKAGMGG
                     AEKWLKGEEECVVTLWNGTPITVQPPNFVELKIVETDPGVRGDTSGGGGKPATLETGA
                     VVRVPLFVGQEEVIKVDTRSGEYVSRVK"
     gene            4010..>4962
                     /locus_tag="VLM17_09775"
     CDS             4010..>4962
                     /locus_tag="VLM17_09775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR65872.1"
                     /translation="MTDALPCDLLIEAGWVVPVAPQGVVLEDHAVAVRDGAIVAVLPR
                     HEARARVRAAEYVSRPHSALIPGLVNAHAHNPMTLLRGVADDLPLMQWLQGHIWPLEA
                     RLIGPEFVADGVALAIAEMLRGGTTCCNENYFFPDVQAATYRRHGFRALVGLPIIDFP
                     SAWARSDEEYFDRACEVHDQWRNDPLVGTAFAPHAPYTVSDASFERIRMLSDQLDVPV
                     HCHVHETAHEVADSQQKHGQRPLARLDRLGLVNDRLVAVHMTQLLEPEIALCAARGVS
                     VAHCPESNLKLASGFCPAAALQRAGVNLAIGTDGAASNNDL"
BASE COUNT          724 a         1719 c         1805 g          714 t
ORIGIN      
        1 ctggccgcgt cctgcacgaa ctcggcgatg ctgcggatgc cgaggccgcg caccttgtcg
       61 gcgatctcct tgacccgctt ctggttgccg gggttcttcg gcagttcctc catgaagccg
      121 cgatcgagct tcacgaacgc cggatcgaag tgcgacagga gctggaagga gtcgaggccg
      181 gcaccgaact gctccagcgc cacccgacag ccgtgcctgg cgaccgcggc gacgaactcc
      241 tgcgccgccc gcaggttggt gaacaccttc gcttccggta cctgcagcac cagcaggctg
      301 ccatcgacgc cgtgcgccgc gagctgctcg ccgatgaact tcggcagcgc ctcgtccacc
      361 agcgaggcct gggtgatctt caccagcagc gtggtcggcg tgcccacgcg cacccgttcg
      421 ccgatcaccg cgatcgcgcg ctgcacgacc cagcggtcga tctcccacag caggccgtgc
      481 tcctccgcga tctgcaggaa gctcagcggc ggcacggtct cgccggcgcc ggcgtccagc
      541 cggacgtagg tctcgtaggt cgcgccgggc tcgccctgca ggctgatcac cggctggtag
      601 tgcaggacga agcggttgtg gtccagcgcc tcgcgcaggc gcgcgaccca ggcatggatg
      661 cgctcctcct ccgcgcggtc gaccgcgctc gggtcgaaga tctcgaagcg gttgccgccg
      721 acgccgatcg acgactgcac gccctggttg gccttcgcca gcacctgggt gacgctggcg
      781 atcttctcgc cgatctgcac gccgccgatg ctcgaggtga tcacgctgga gcggtcggcg
      841 atgtcgaaca cgtgcgaggc gaacgcctcg cggatgccct cggccagcgc ggtggtgacc
      901 gtgtggtcgc ctcgcatcag caccgcgagg ctgtgctcgc cgaagcgcgc ggcctgggcg
      961 ctgccgtctt cgagcctggc gccgaggacg ccgcgcaggc gctcggcgat ggccgcgagc
     1021 atggcgtcgg cggaatccag gccgatctcc tgcagcaggc gctggtagtg gtcgggttcg
     1081 agcagcagca ggccgtactg ggcctggcgc tgggcggcgt ccgccaccgc gtcctccagc
     1141 gcgcgcagga aggtcgggcg gttgagcagg ccggtggtct ggtcgcgctg gcgcagttcc
     1201 tcgacctcgc gtgccagttc ggggtccatt tcctgccggc ggaacaccac ctgcaggcag
     1261 ggttcgccct cgtacagcgc ggacgtgaac tccatcaccg cggggaaatc gttgccttcc
     1321 aggtcgcgcg ccttgagttc gtagcgcggg ggcggggcct cccccttgct cagcgacttg
     1381 agcagctgct tgaagccctc gacgtgctgc ggcgccacca ggtcgagcag cgacatgccc
     1441 tcgacctcgt cgaaggattc gtagccgaac atctccaggt acgcggcgtt ggcgcggatg
     1501 tgcatgcctt cgtgcacgta ggcgatcgga tcgcgcgagg actcgatcag cgcgtcgcag
     1561 cggcgctcgg tctcgcgcac ctgcgcctcc agccggcgca gcgcgcggcg ggcctcgagg
     1621 tcggcccatt cggtgcggac cacgccgagc agctgctgcg gcttgtggcg cagggcgagg
     1681 gcgcgcacgc caccggccag tgcctgggtc aggatgacgt cgtcgacgta ttcggccacc
     1741 gcgaccaccg gcaggtcctt gccgctggac ttgaccagct gcagcacctc gtcgatcgcc
     1801 accgccttgc cctgctgggc ggcgaggacg aggtcgatcg cctgctcgcc gaccatctcg
     1861 accatctcgt cggcggaggc gggacgcagc gggcggacgg cgatgccggc gttgcgcaac
     1921 atgctgacga tggcctcggc gtcttcgacg ctgtcgtcga cgatcatcag gcgcagtgcg
     1981 gtatcggttc cgtgcggcat gcatctctcc gtatcgccgg gtttctacac gatgcacgcc
     2041 cccgcgtcca ttgcacttcg ggcacggtac gcgagccctg ccggcgcggg agtggagggc
     2101 ggcgtcggcc atgcaggcat acggccgggg gttgccgcgg gcgggtcctg catgcgcccg
     2161 ggcgctccga tgggccgcgc ggtttccccg caacccgtca gagcgggcgc ttgccggtgt
     2221 cgccggcgac ctcgcgcacc agcctcggca cgaggtagcc ggagaggcgt gccgcgagcg
     2281 cgcggtgcag cgcgcgggct tcgtcgtcgg ggacttcgaa gtgggccgtg ccggcgacgc
     2341 ggtcgagctg gtgcaggtag taggggagca cgcccgcggc ccaggcccgc gacgacagtg
     2401 cggcgagcgc gtcgactgaa tcgttcacgc cgcgcagcag caccgcctgg ttgagcagga
     2461 tcgcgccggc cgcgcgcagc tgcgcgagcg cggcgtcgac gtgcgcgtcg aactcgttcg
     2521 cgtggttggc atgcaggacg aaggcgaccg gccaggggag ggcccgcagc cattcgagca
     2581 ggccggcatc cacgcgctcg ggcagcacga cgggaaggcg gctgtggatg cgcaggcgga
     2641 ccaggtgcgg gatcgcggcg agcgcgtccg tgagttcgga cagtttcgag gtcgccagcg
     2701 acagcgggtc gccgccggac aggatcactt cctcgatcga cgggtcgccg gcgacgagtg
     2761 cgacggcttc gcgccagccc tgcgcggcgg cggtttcctc cgcgtagggg aaatggcggc
     2821 ggaagcagta gcggcaatgc accgcgcagc tgccggtggc caccagcagc gcgcgacccc
     2881 ggtacttgcg gatcacgccg gcgcccgcgc gcgcggcgcc gtcgccgact gcgtccaggc
     2941 cgaagccggg cacgatgcgc tcctcgtcgt cgagcggcag cacctggcgc agcagcgggt
     3001 cgtgcggatc ccccgggcgc atgcgcgcga cgaagccacg cggcacgcgc acggggaact
     3061 gcgtcgccgc ggattcggac aggcgcgcgg cgaggcgggg caggccgacc agcgcgagca
     3121 gctcgcgcgg gtcgcgcacg gcgtcgcgcc agaggcgttt ccagtccgcg gcgccggcgt
     3181 gcggcgcccc ggcgggctgc agggcagggg aggcagcggg tatcatggcg cgtccgaatg
     3241 accggatgcc ggcaggcgca acgcccggcc cggcacccca atgcccttca ttttagccgt
     3301 ccgcgcgacg gcccagcagg agtgtccgat ggccagcctt ggcatgaacg acgtgaagac
     3361 cggccagaag atcctggtca acaacgagcc gtgcgtgatc acggaaaccg aatacgtcaa
     3421 gccgggcaag ggccaggcct tcacccgggt gaagtaccgc aacatcaagt cgggccgcgt
     3481 ggtcgagctg accatgaagg cgaccgactc gctggaggtc gcggacgtgg tcgacaccga
     3541 catgcagttc ctctacgccg acggcgagta ctggcacttc atgaaccagg agagcttcga
     3601 gcagttccag gccgacaagg ccggcatggg cggcgccgag aagtggctca agggcgagga
     3661 ggagtgcgtg gtgacgctgt ggaacggcac gccgatcacc gtgcagccgc cgaacttcgt
     3721 cgaactgaag atcgtcgaga ccgacccggg cgtgcgcggc gacacctccg gcggcggcgg
     3781 caagccggcg acgctggaaa ccggcgcggt cgtgcgcgtg ccgctgttcg tcggccagga
     3841 ggaagtgatc aaggtcgaca cgcgttcggg cgaatacgtc tcgcgggtga agtgatttga
     3901 tccgcggcga ccgcgcggcg gtgcgtcggg cgaaccttcc gggtgacccg tccccggggc
     3961 agcgtggcgg gcaaccgggc ggaccagccc gggacgaagg gcgaattcca tgactgatgc
     4021 gctgccctgc gacctcctga tcgaagccgg ctgggtcgtg ccggtggcgc cgcagggcgt
     4081 ggtgctcgag gaccacgccg tcgccgtgcg cgacggcgcc atcgtcgccg tgctgccgcg
     4141 ccacgaggcg cgcgcgcggg tccgcgcggc cgaatacgtg tcgcgtccgc actcggcgct
     4201 gatcccgggg ctggtcaacg cgcatgccca caacccgatg acgctgctgc gcggcgtcgc
     4261 cgacgacctg ccgctgatgc agtggctgca gggccacatc tggccgctgg aagcacggct
     4321 gatcgggccg gagttcgtgg ccgacggcgt cgcgctcgcg atcgccgaga tgctgcgcgg
     4381 tggaaccacc tgctgcaacg agaactactt cttcccggac gtgcaggcgg cgacctaccg
     4441 ccgccatggg ttccgcgcgc tggtcgggct gccgatcatc gatttcccct cggcctgggc
     4501 gcgcagcgac gaggaatatt tcgatcgtgc ctgcgaggtc cacgaccagt ggcgcaacga
     4561 tccgctggtc ggcaccgcgt tcgcaccgca tgcgccgtac accgtgtcgg acgcgagctt
     4621 cgagcgcatc cgcatgctct ccgaccagct cgacgtgccg gtgcattgcc acgtgcacga
     4681 aaccgcgcac gaggtggccg attcgcagca gaagcacggc cagcgcccgc tggcgcggct
     4741 ggaccgcctc ggcctggtca acgaccgcct ggtcgcggtg cacatgaccc agctgctgga
     4801 gccggagatc gccctgtgtg ccgcgcgcgg cgtcagcgtc gcgcactgcc cggagtccaa
     4861 cctcaagctc gcctccggct tctgcccggc ggcggcgctg cagcgtgccg gcgtcaacct
     4921 cgcgatcggc accgacggcg cggccagcaa caacgacctc ga
//
LOCUS       DATIQC010000453         1581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_488704, whole genome shotgun sequence.
ACCESSION   DATIQC010000453 DATIQC010000000
VERSION     DATIQC010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488704"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..736
                     /locus_tag="VLM17_09780"
     CDS             <1..736
                     /locus_tag="VLM17_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008438599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HSR65873.1"
                     /translation="RVGGIHANATYPAEFLRDNLAIQTNVIHSAWKHGTRKLLFLGSS
                     CIYPKLAPQPLREDALLTGPLEPTNEWYAIAKIAGLKMCQAYRRQYGFDAIVAMPTNL
                     YGPGDNYHPQNSHVVPALIRRFHEAKAAGAPEVVIWGTGTPLRELMHVDDLADALLLL
                     MQRYSDEAMVNVGSGQETTIADLARLIAAVSGYAGALRFDPSRPDGTPRKLLDTSRLQ
                     ALAWRSQVSLEKGLRDTYEAYAARRP"
     gene            895..>1581
                     /locus_tag="VLM17_09785"
     CDS             895..>1581
                     /locus_tag="VLM17_09785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65874.1"
                     /translation="MLFGAWATLVSLVVFAGFLDFGFGNGTMNLVAAAHGRGSAAEVA
                     SVIREGRRTLVLIALALAALVLVALPLVPWHRMLGLKADYAGDCRAAAAAVLFTVVLA
                     VPLNLANRIQLGLGRGDRAFRWQVLGQLATLALVVVLARANASFVVLTAAAVATPLLA
                     SLANTLSLSRDPVLAHPRSGHRPDLARRIRREGLLFFVLQLSAALAFSADLPLISTLR
                     GPADAGTYAIV"
BASE COUNT          204 a          582 c          541 g          254 t
ORIGIN      
        1 cagggtcggc ggcatccacg ccaacgccac ctacccggcc gagttcctcc gcgacaacct
       61 cgcgatccag accaacgtga tccattcggc ctggaagcac ggcacgcgca agctgctgtt
      121 cctcggctcc tcgtgcatct acccgaagct ggcgccgcag ccgctgcgcg aggacgcgct
      181 gctgaccggg ccgctggaac cgaccaacga gtggtacgcg atcgcgaaga tcgcggggct
      241 gaagatgtgc caggcgtacc ggcgccagta cggcttcgac gcgatcgtgg cgatgccgac
      301 caacctgtac ggtcccggcg acaactacca cccgcagaac tcccacgtgg tgccggcgct
      361 gatccggcgc ttccacgaag cgaaggccgc cggcgcgccg gaagtggtga tctggggcac
      421 cggcacgccg ctgcgcgaac tgatgcacgt cgacgacctg gccgatgcgc tgctgctgct
      481 catgcagcgc tacagcgacg aggcgatggt gaacgtcggt tccgggcagg aaaccaccat
      541 cgcggacctg gcgcgcctga tcgccgccgt gtccggctac gcgggtgccc tgcggttcga
      601 tccgtccagg ccggacggca ccccgcgcaa gctcctcgac acatcgcgac tgcaggccct
      661 cgcctggcga tcgcaggtgt cgctggaaaa gggattgcgc gacacgtacg aggcgtacgc
      721 cgcgcgccgg ccatgaggat gccccgcccc tcggccattc cctccccgcg tgactggctg
      781 ggcccccggg gccggctgat cgtgcagacg ggcagctggt ccctggcggc gaaggccgcg
      841 gccgcggcca acctgttcct ctgcgtgcct ttcgtgctgc acgccctggg gccggtgctg
      901 ttcggcgcct gggcgacgct ggtgtcgctc gtggtgttcg ccggattcct cgacttcggt
      961 ttcggcaacg gcacgatgaa cctggtggcc gccgcgcacg gccgcggctc cgcggcggag
     1021 gtcgcatcgg tgatccgcga gggacgccgg acgctggtgc tgatcgcgct ggcgttggcg
     1081 gccctggtgc tcgtggccct gccactggtg ccctggcatc gaatgctggg actgaaggcc
     1141 gactacgccg gcgactgccg ggcggcggct gcggcggtgc tcttcaccgt cgtgctggcc
     1201 gtgccgctca acctcgccaa ccggatccag ctcggcctcg gccgggggga tcgcgcgttc
     1261 cgctggcagg tgctgggcca gctcgcgacc cttgcgctgg tggtggtcct ggcaagggcg
     1321 aacgcctcgt tcgtcgtgct caccgccgcg gccgtggcca cccccttgct ggcgtcgctc
     1381 gcgaacacgc tgtcgctgtc gcgcgacccc gtgctcgcgc atccgcggtc cgggcaccgc
     1441 ccggacctcg cccgccgcat ccgccgcgaa ggactgttgt tcttcgtcct gcaactgtcc
     1501 gccgccctgg cgttctcggc ggacctcccg ctgatttcca cgctgcgcgg acccgccgat
     1561 gccggcacct atgcgatcgt c
//
LOCUS       DATIQC010000454         6788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_418188, whole genome shotgun sequence.
ACCESSION   DATIQC010000454 DATIQC010000000
VERSION     DATIQC010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6788
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418188"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..733
                     /locus_tag="VLM17_09790"
     CDS             <1..733
                     /locus_tag="VLM17_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HSR65875.1"
                     /translation="GELHLSILIETMRREGYELAVSRPEVIIKQIDGVMQEPIESLVV
                     DMEEQFQGGVMGRLGERKALLQNMEPDGKGRVRLDYMIPARGLIGFQTEFRTLTAGTG
                     LLFHVFDHYGPKTEGSIGQRQNGVLISNGTGPSPAYAQIAMQERGRLFIEPGEEIYEG
                     QIVGINSKDNDLTVNALRGKQLTNFRASGKDDDEGLIPAIKFSLEQALEFIDDDELVE
                     VTPRAIRLRKKMRTETDRKRASRAA"
     gene            791..1273
                     /locus_tag="VLM17_09795"
     CDS             791..1273
                     /locus_tag="VLM17_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2127 domain-containing protein"
                     /protein_id="HSR65876.1"
                     /translation="MRRDDPRHPHYDPNPRHHPGLRAIALVEGVKGVLALLAASGLEV
                     IGPVPLKQWVHELIDEFQLDPQHGALAWLSQTISPGSVHMAAAAVAAYGVLHVAEAWG
                     LWRDKAWASWLGCLAASLYLPFDVYALFRHPGWIATAVLAINIVVVAVLGRDLLRRRY
                     "
     gene            1497..2957
                     /locus_tag="VLM17_09800"
     CDS             1497..2957
                     /locus_tag="VLM17_09800"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008435454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HSR65877.1"
                     /translation="MARRDIDSRQLTRAYLDRIAAIDQVGPSLNAIIALNPQALAEAD
                     ARDAERRAGHLRGPLHGIPVLLKDNIDALPMATTAGSLALAGHHPPRDAFLVQRLRAA
                     GAVILGKTNLSEWANFRSTRSVSGWSGAGGQTRNPYVLDRNPCGSSAGTGTAIAASLA
                     TVGVGTETDGSIICPSSVAGLVGLKPTVGLVSRDGIVPISSSQDTAGPMARSVADAAA
                     LLTALAASDAEDPATRAASRHATDYVAHLKPDALRGARIGVVRANMGFHPDVDAAMER
                     AIATMRAAGATVVDADIPTAGKWDDAELQVLLYEFKDGVARYLQSRQAPVRTLAGLIA
                     FDDAHAAEEMPWFGQELFEQAQAKGPLGERAYRDAKRRAHALAGPRGIDAALHRQHLD
                     ALVAPASGPAWRTDFVLGDHFTGAGYGAAAVAGYPSLTVPMGESHGLPLGIVFMGPAW
                     SEPRLVELGYAFEQRARARKAPRFLPTVEAAGVPSR"
     gene            complement(2979..4367)
                     /locus_tag="VLM17_09805"
     CDS             complement(2979..4367)
                     /locus_tag="VLM17_09805"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HSR65878.1"
                     /translation="MPSLDRTLQPVKLSPEWTPASWRGRPSAQMPVYPDADELDAALA
                     ELHALPPLVTSWEIMALKQRLAEAQEGRRFLLQGGDCAESFGECSSEVISNRLKVLLQ
                     MSLVLVHGLRLPVVRVGRFAGQYAKPRSADTETIGGVTLPSYRGDIVNAPAFTPQART
                     PDPRRMIKAHARSAMTMNFVRALIDGGFADLHHPEYWDLGWVRHSPLADEYQHMVAGI
                     GDAVRFMETLSGSEVHNLNRVDFYTSHEALLLPYEEAQTRQVPRQWGWFNLSTHLPWI
                     GMRTAALDGAHVEYFRGIRNPVGLKVGPSVAPDQLLRLIEALNPDDEPGRLTLIHRMG
                     ATSIAAKLPALLEAVRREGRRVLWVCDPMHGNTESVASGYKTRRFSNIRSELEQAFDL
                     HAAAGTRLGGVHLELTGEDVTECLGGARELTESDLARSYRSTVDPRLNYEQALETAML
                     IVRKQAQLNAPA"
     gene            complement(4455..4973)
                     /locus_tag="VLM17_09810"
     CDS             complement(4455..4973)
                     /locus_tag="VLM17_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017355431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HSR65879.1"
                     /translation="MNANPFRWSFRAQCLAAFLACAGLIAFALYEQLHVGLVPCPLCI
                     FQRIVFTATGVAFLVAGLHAPRGAFGRRAYALLALLAALVGVGIAGRHVWIQHLPPGQ
                     VPACGPGLDYLRELLPLSGVIRTVLTGSGECARVDWTLFGLSMAEWGLVWFVLLAGWA
                     SFLLLRRRPRRA"
     gene            complement(5101..5472)
                     /gene="rplQ"
                     /locus_tag="VLM17_09815"
     CDS             complement(5101..5472)
                     /gene="rplQ"
                     /locus_tag="VLM17_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HSR65880.1"
                     /translation="MRHQKSGRKFSRTSAHRQAMFENMAASLFKHELIRTTLPKAKEL
                     RRVAEPLITLAKVDSVANRRLAFSRLRDKEAVGTLFTVHGPRYSTRPGGYLRILKCGF
                     RAGDNAPMAYVELVDRPQAAE"
     gene            complement(5767..6765)
                     /gene="rpoA"
                     /locus_tag="VLM17_09820"
     CDS             complement(5767..6765)
                     /gene="rpoA"
                     /locus_tag="VLM17_09820"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020852431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HSR65881.1"
                     /translation="MTVSAHQVLRPRGPNIERLGSNRAKVVIEPLERGYGHTLGNALR
                     RVLLSSIPGYAITEVEIDGVLHEYTTVEGLQEDVLEVLLNLKDVAIRMHTGDSSTLTL
                     AKQGPGVVTAGDIKTDHNVEILNPEHVIAHLTKDTALNMRLKIERGFGYQPAAARRRP
                     DEETRAIGRLMLDASFSPVRRVAYAVEAARVEQRTDLDKLVLDIETNGTIDAEEAVRT
                     AADILSDQLSVFGDFTHRDRGAAKPQAAGVDPILLRPIDDLELTVRSANCLKAESIYY
                     IGDLIQKTEVELLKTPNLGKKSLTEIKEVLAQRGLSLGMKLENWPPAGIASHGMMG"
BASE COUNT         1007 a         2361 c         2415 g         1005 t
ORIGIN      
        1 cggcgagctg cacctgtcga tcctgatcga gacgatgcgc cgcgaaggct acgaactggc
       61 cgtgtcgcgc cccgaggtga tcatcaagca gatcgacggc gtgatgcagg agccgatcga
      121 gtcgctcgtg gtcgacatgg aggagcagtt ccagggcggc gtgatgggcc gcctgggcga
      181 gcgcaaggcg ctgctgcaga acatggagcc cgacggcaag ggacgcgtgc gcctggacta
      241 catgattccc gcgcgcggcc tgatcggctt ccagaccgag ttccgcacgc tcaccgccgg
      301 caccggcctg ttgttccacg tgttcgacca ctacggcccg aagaccgagg gttcgatcgg
      361 ccagcgccag aacggcgtgc tgatttccaa cggcaccggc ccctcccccg cctacgcgca
      421 gatcgccatg caggaacgcg gccgcctgtt catcgagccg ggcgaggaaa tctacgaagg
      481 ccagatcgtc ggcatcaaca gcaaggacaa cgacctcacc gtcaatgccc tgcgcggcaa
      541 gcagctgacc aatttccgtg cttccggcaa ggacgatgac gaaggactga tccccgcgat
      601 caagttctcg ctcgagcagg cgctggaatt catcgacgac gacgaactcg tcgaggtgac
      661 gcccagggcg atccgcctgc gcaagaagat gcgcaccgag accgaccgca agcgcgcctc
      721 gcgcgcggcc tgagggtcgc acgggcccgc ggtcgaccgc gggcacgtcg ccgggttagg
      781 ctgccggccg atgcgtcgcg acgacccccg ccatccgcat tacgatccga acccccggca
      841 ccacccgggg ctgcgggcga tcgcgctggt cgagggcgtg aagggcgtgc tcgcgctgct
      901 ggccgccagc ggcctcgagg tgatcggccc ggtgccgctc aagcagtggg tgcacgagct
      961 gatcgacgaa ttccagctcg atccgcagca cggcgcgctg gcatggctgt cgcagacgat
     1021 cagcccgggc tcggtgcaca tggccgcggc cgcggtcgcc gcatacggcg tcctgcacgt
     1081 cgccgaagcc tggggcctgt ggcgcgacaa ggcctgggcc tcgtggctcg gctgcctcgc
     1141 cgcgtcgctg tacctgccgt tcgacgtgta cgcgctgttc aggcatccgg gctggatcgc
     1201 caccgccgtg ctggcgatca acatcgtcgt ggtcgccgtg ctcggccgcg acctgctgcg
     1261 ccgccgctac tgaacggact tgcggccggc gcggccgcac gcaatcctcg cgcgtccgcc
     1321 acaggagcac gcgcatgcgc cacgccctgc ccgtcctcgc cgccgccctg ctcgccgcgt
     1381 gccacgcatc cgcgccgctc gcgcgcgacc cggcgccggc gccggcggcc gccaccgggg
     1441 tcccgccacc cgccttcgcc ttcgccgagg tgggcgtcgc cgacctgcag gcgcggatgg
     1501 cgcgtcgcga catcgacagc cgccagctga cccgggccta cctcgaccgg atcgccgcca
     1561 tcgaccaggt cgggccttcc ctcaacgcga tcatcgcgct caacccgcag gcgttggcgg
     1621 aggccgatgc gcgcgacgcc gagcgcaggg ccggccacct gcgcgggccg ttgcacggca
     1681 ttccggtgct gctcaaggac aacatcgacg cgctgccgat ggcgaccacc gccggttcgc
     1741 tcgcgctggc cggtcaccat ccgccgcgcg acgccttcct ggtgcagcga ctgcgcgccg
     1801 ccggcgcggt gatcctcggc aagaccaacc tgagcgagtg ggccaacttc cgctcgacgc
     1861 gctcggtgtc gggctggagc ggcgccggcg ggcagacgcg caatccgtac gtgctcgacc
     1921 gcaacccctg cggctcgagc gccggcaccg gcaccgcgat cgcagccagc ctcgccaccg
     1981 tcggcgtcgg gaccgaaacc gatggcagca tcatctgccc gtcgtcggtc gccgggctgg
     2041 tcgggctgaa gccgacggtg ggactggtga gccgcgacgg catcgtgccg atctccagca
     2101 gccaggacac cgccgggccg atggcgcgca gcgtcgccga cgccgcggcg ttgctcaccg
     2161 cgctcgccgc ctccgatgcg gaggacccgg ccacgcgcgc ggcgtcgcgg cacgcgaccg
     2221 actacgtggc gcacctgaag cccgatgcgt tgcgcggtgc gcgcatcggc gtcgtgcgcg
     2281 cgaacatggg cttccatccc gatgtcgacg cggcgatgga acgcgccatc gccacgatgc
     2341 gcgccgccgg cgccacggtg gtcgacgcgg acatcccgac cgcaggcaag tgggacgacg
     2401 ccgagctgca ggtcctactg tacgaattca aggacggcgt cgcgcggtac ctgcagagcc
     2461 gccaggcgcc ggtgcgcacg ctcgccgggc tgatcgcctt cgacgacgcg cacgcggcgg
     2521 aggagatgcc gtggttcggc caggaactgt tcgagcaggc gcaggccaag gggccgctgg
     2581 gcgagcgcgc ctaccgcgat gcgaagcgca gggcgcatgc actcgccggc ccgcgcggca
     2641 tcgacgcggc gctgcaccgg cagcacctcg acgcgctggt ggcaccggcc agcgggccgg
     2701 cctggcgcac cgacttcgtg ctcggcgacc acttcaccgg cgccggctac ggcgcggcgg
     2761 cggtcgccgg ctacccgagc ctgaccgtgc cgatggggga aagccacggg ctcccgctgg
     2821 gcatcgtctt catgggcccg gcgtggagcg agccgcgact ggtcgagctc ggctacgcgt
     2881 tcgaacagcg ggcgcgcgcg cgcaaggcgc cgcgtttcct gccgacggtc gaagctgcgg
     2941 gagttccatc ccgctagcgg tcgttcgacc gcggctgctc aggctggcgc gttcaactgc
     3001 gcctgcttgc gcacgatcag catcgcggtc tcgagcgcct gctcgtagtt cagccgcgga
     3061 tccacggtcg agcggtatga acgggcgagg tccgattcgg tgagctcgcg cgcgccgccg
     3121 aggcattcgg tgacgtcctc gccggtgagc tcgaggtgga cgccacccag gcgcgtgccg
     3181 gccgccgcat gcaggtcgaa cgcctgctcc aactcgctgc ggatgttgga gaagcgccgc
     3241 gtcttgtagc cgctggcgac gctctcggtg ttgccgtgca tcgggtcgca cacccagagc
     3301 acgcgccggc cttcgcgacg cacggcctcg agcagcgccg gcagcttcgc cgcgatgctc
     3361 gtcgcgccca tgcggtggat cagcgtcagc cggcccggct cgtcgtcggg gttgagtgcc
     3421 tcgatgaggc gcagcaactg gtcgggcgcg accgatggcc cgaccttcag gcccaccgga
     3481 ttgcggatgc cgcggaaata ctcgacgtgc gccccgtcca gcgccgccgt gcgcatgccg
     3541 atccacggca ggtgcgtgct gaggttgaac cagccccact gccgcggcac ctgccgcgtc
     3601 tgcgcttcct cgtacggcag cagcagcgct tcgtgcgaag tgtagaagtc gacccggttg
     3661 aggttgtgca cctcgctgcc ggacagcgtc tccatgaagc gcaccgcgtc gccgatgccg
     3721 gcgaccatgt gctggtattc gtcggcgagc ggcgaatgcc gcacccagcc gaggtcccag
     3781 tattcggggt ggtgcaggtc ggcgaagccg ccgtcgatga gcgcgcgcac gaagttcatc
     3841 gtcatcgccg agcgcgcatg cgccttgatc atgcggcgcg ggtcgggcgt gcgcgcctgc
     3901 ggcgtgaacg cgggcgcgtt gacgatgtcg ccgcgatagc tcggcaacgt caccccgccg
     3961 atcgtctcgg tatcggccga acgcggcttc gcatactggc cggcgaagcg gccgacccgc
     4021 accaccggca ggcgcaggcc gtgcaccagc accaggctca tctgcagcag caccttcagg
     4081 cggttcgaaa tcacctccga actgcactcg ccgaagctct ccgcgcagtc gccaccctgc
     4141 agcaggaagc gcctgccttc ctgcgcttcg gccaggcgct gcttgagcgc catgatctcc
     4201 cacgacgtca ccagcggcgg cagcgcgtgc agctcggcca gcgcggcgtc gagttcgtcc
     4261 gcatccgggt agaccggcat ctgcgccgac ggccggcccc gccacgaggc cggcgtccat
     4321 tcgggcgaca gcttcacggg ttgcaaggtg cgatccaggc tcggcattgg tgcgatcaac
     4381 gaggcattcg ggcacgcatc atggcgccgc gtccgggacg tcgcaacttg gtgcgcggca
     4441 ggacgccgca gggttcaggc gcggcgcggc cgcctgcgca ggaggaggaa cgatgcccag
     4501 cccgcgagca gcacgaacca caccaggccc cattcggcca tggacaaccc gaacagcgtc
     4561 cagtcgaccc tggcacactc gccggagccg gtgagcacgg tcctgatcac gccgctcagc
     4621 ggcagcagtt cgcgcaggta gtcgaggccc ggcccgcagg ccggcacctg gccgggcggc
     4681 aggtgctgga tccagacatg gcgcccggcg atgccgaccc cgaccagcgc ggccagcagc
     4741 gccagcagcg cgtaggcgcg ccggccgaag gctccgcgcg gcgcatgcag gccggcaacc
     4801 aggaacgcca cgcccgtcgc cgtgaacacg atccgctgga agatgcacag cgggcacggc
     4861 acgagcccga cgtgcagctg ctcgtagagg gcgaaggcga tcaggcccgc gcatgcgagg
     4921 aatgcggcca ggcactgcgc gcggaaggac cagcggaagg gattcgcgtt catgcgcgca
     4981 agatagaggg cgcgcgaggg ctttgggaag tgcggttcgt cgccgccgaa cggctggttc
     5041 ccgaaaacga aaaaccccgg cctgggccgg ggctttcggg gtgtcgcctg cggcagtcgc
     5101 ttactcggcg gcctgcgggc gatcgaccag ttcgacgtac gccatcggcg cgttgtcgcc
     5161 ggcgcggaag ccgcacttga ggatgcgcag gtagccgccc gggcgggtgg agtagcgcgg
     5221 gccgtgcacg gtgaacaggg tgccgaccgc ttccttgtcg cgcaggcgcg agaaggcgag
     5281 gcggcggttg gccacgctgt cgaccttggc gagggtgatc agcggctcgg cgacgcgacg
     5341 cagttccttg gccttcggca gcgtggtgcg gatgagttcg tgcttgaaca gcgacgcagc
     5401 catgttctcg aacatcgcct ggcgatgggc gctggtgcgg ctgaacttgc gtccggattt
     5461 ctggtggcgc atgggttgga ttcctggtga atgttggaac tgctggacgt cgttgtcgcc
     5521 atcctggcgc tggagcttcg gactgcgctg gtcctggccg gccgatccgt gggcggcgcg
     5581 ccgcgggcgt ctgggcccgt cggctggtgc gatgcgcctg ttacgcgcga ccgcgaaaag
     5641 cgggtgctgc aacttctgac gctgccatac atggcgacgc gggctccgga gagccccgcc
     5701 cggtcatccc gaccgggcgt tcaagcccgc agccgatgcc ggtcgggcat cggccagcgc
     5761 attcgctcag cccatcatcc cgtgcgaggc gatgccggcc ggcggccagt tctcgagctt
     5821 catgccgagg gacaggccac gctgggcgag cacttccttg atctcggtga gcgacttctt
     5881 gccgaggttc ggcgtcttca gcagctcgac ctcggtcttc tggatcaggt cgccgatgta
     5941 gtagatgctc tcggccttga ggcagttggc cgaacgcacg gtcagctcga ggtcatcgat
     6001 cgggcgcagc aggatcggat cgacgccggc agcctgcggc ttcgccgcgc cgcggtcgcg
     6061 gtgggtgaag tcgccgaaca ccgacagctg gtcgctgagg atgtcggcgg cggtgcgcac
     6121 ggcttcctcg gcgtcgatgg tgccgttggt ctcgatgtcg aggaccagct tgtcgaggtc
     6181 ggtgcgctgc tcgacgcgcg cggcctcgac cgcatacgcc acgcggcgca ccggcgagaa
     6241 cgaggcgtcc agcatcagcc ggccgatcgc gcgggtttcc tcgtccgggc ggcgacgggc
     6301 ggcggccggc tggtagccga agccgcgctc gatcttcagc cgcatgttca gcgcggtgtc
     6361 cttggtcagg tgcgcgatga cgtgctcggg gttgaggatc tcgacgttgt ggtcggtctt
     6421 gatgtcgccg gcggtgacca cgcccggacc ctgcttggcg agggtcaggg tcgaggaatc
     6481 gccggtgtgc atgcggatgg cgacgtcctt gaggttgagc agcacctcga gcacgtcttc
     6541 ctgcaggcct tcgaccgtgg tgtactcgtg cagcacgccg tcgatctcga cttccgtgat
     6601 ggcatagccg gggatggacg agagcagcac gcgacgcagg gcattgccga gcgtgtggcc
     6661 gtagccacgc tccagcggtt caatcacgac cttggcgcgg ttgctgccga ggcgttcgat
     6721 gttcgggccg cgcggacgca ggacctgatg ggcggaaacc gtcatggacg atgacactcc
     6781 tggaaatt
//
LOCUS       DATIQC010000455         6393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_418306, whole genome shotgun sequence.
ACCESSION   DATIQC010000455 DATIQC010000000
VERSION     DATIQC010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6393
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418306"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..813
                     /locus_tag="VLM17_09825"
                     /pseudo
     CDS             1..813
                     /locus_tag="VLM17_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010379135.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
     gene            891..1985
                     /locus_tag="VLM17_09830"
     CDS             891..1985
                     /locus_tag="VLM17_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HSR65882.1"
                     /translation="MDIPGDLAPQPPTRARSLAARFYADPAMVALDRRAVFDRAWQLV
                     AHECQLRDAGDHVVADLAGLPVLAVRGADGAGGPGEIRVFHNVCRHRAGPIAQCDGLA
                     AKSLRCRYHGWTYTLEGQLRSAPEMGTAADFNVGDIALPQLAVRVWQGLVFAAVAPER
                     APDFDALVAGIDARLGPGRGFARYGHHRRVGYDVACNWKVYVDNYLEGYHVPHVHPAL
                     NRLLDYRSYVTEVEAWHSLQWSPLESDGTLYGNGDALYYWLWPNTMLNILPGRLQTNR
                     IVPLGVDRCRVEFDFYYPVDPSDEGHARREADLSFSDEVQHEDLGICEDVQRGLASGS
                     YEPGRLNPLRETALLHFHELLRAAYREALA"
     gene            1982..2419
                     /locus_tag="VLM17_09835"
     CDS             1982..2419
                     /locus_tag="VLM17_09835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde-activating protein"
                     /protein_id="HSR65883.1"
                     /translation="MIPAPLRGGCHCGNLALTLATAQDPAALHPRACDCAFCTKHGAG
                     WVSDPDGALAIGVREAAALGDYRQGSGSARFLLCRDCGVLVAVVHEGDGGLRGAVNAR
                     CLDAARFGDAVRVSPQQLSREDKIARWGQLWTPATLDVGRDAP"
     gene            2416..3705
                     /locus_tag="VLM17_09840"
     CDS             2416..3705
                     /locus_tag="VLM17_09840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSR65884.1"
                     /translation="MTSNDTPATPAPSRPLGLWSATALVVGSMIGSGVFLLPASLAPY
                     GAASLLGWGVTLCGALLLALTFARMAGRWPQTGGPYVYARNVFGELPGFVVAWSYWVS
                     IWCANAAIAVAFAGSIGAIFPALTATPLRSAACALGALWACSAVNLAGVREAGRMQLL
                     TTVLKFVPLVLFGGIALWFTDAHHYVPFNRSGAPLPQVANATVALTLWAFLGLEAATV
                     PAGSIHDAQRTVPRATVLGTLLAGVATILACTAVLGLLPGDALANSQAPMADAARALW
                     GPAAGIALAVVAAISTFGALNGWVLISAQVPLAAATDGLLPARFARVDARGTPVFGVL
                     ASSVLATLLVFANYSQSLVQLFTFSILLSTAATLLPYVVGSAAWLWRGPARHRVASAL
                     ALAYGLYALAGTGGESLLWGSALVLAGVPVYWWNRRR"
     gene            complement(3712..4977)
                     /locus_tag="VLM17_09845"
     CDS             complement(3712..4977)
                     /locus_tag="VLM17_09845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HSR65885.1"
                     /translation="MTDTPARSPRRLAPLLGALAMFGPFSIDTIFPAFPEIGAQLHAD
                     TLAMQQTISAYLVAYALMSVVHGPLSDAVGRKRVILAGLAVFTLASVGCALSRDLPTL
                     LLFRVVQGLSAGVGLIVGRAVIRDVLHGHDAQRLMSQVSMTFGIAPAIAPVIGGWILG
                     WSRWPTIFWFLVAFSALLWIATWLALPETHPPGARLKPHPRVLLRDYLAILANRRFQR
                     LAAAGTFNFGALFVYIASAPAFVLELLRLHGRHLRQNEFAWFFVPMIGGMMLGAFVSG
                     RAAGRISGQRLAQLGFTCCGLAAVLNIAYNLFVPQPQVPWAVLPISLNAFGVALVFPI
                     LTLAILDMYPRQRGSASSLQAFGSLVSNALIAGVLSPLISDRPMHLAIAAGAFSLAAW
                     AFWRWELQADRRVPAPVAEAAALEPTDRM"
     gene            complement(5064..5480)
                     /locus_tag="VLM17_09850"
     CDS             complement(5064..5480)
                     /locus_tag="VLM17_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HSR65886.1"
                     /translation="MSQRPFDLQRIDHVVLRVRDAAAMQAFYCDVLGCREERRQDAIG
                     LVQLRAGDSLIDLVPVDGKLGRMGGAAPGPEGRNMDHLCLRVEPFDKAAIMAHLEAHG
                     ARVGEFGSRYGAEGEGPSQYLFDPEGNVVELKGPPA"
     regulatory      5681..5809
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            5852..>6393
                     /locus_tag="VLM17_09855"
     CDS             5852..>6393
                     /locus_tag="VLM17_09855"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011260009.1"
                     /note="acts in conjunction with GvcH to form
                     H-protein-S-aminomethyldihydrolipoyllysine from glycine;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
                     /protein_id="HSR65887.1"
                     /translation="MSQSPQPQNPASRAPALRDLEDHDAFLQRHIGPNDAEIRHMLGV
                     VGHGSLDALTDAIVPAKIKSSAPLALPAPVSEVEALAKVRAIAAKNQVFRSFIGQGYY
                     GTHTPNVILRNILENPAWYTAYTPYQAEISQGRMEALINFQTMCADLTGMEIANASLL
                     DEGTAAAEAMGMMARLAPKRR"
BASE COUNT          882 a         2412 c         2239 g          860 t
ORIGIN      
        1 atgcgcgccg ccaccgacgt cctgctcaac acggccctgg tcgaggcttg gccggcatgg
       61 ctgctgcgcg cgcgcggcaa ccacgacgcg cggcggctgg cgcaggcgca ctgggtgctg
      121 cgtcgcaagc gcgacggcgc ctacctcgcg accgcgcgcg acaaccggct gctgccgctg
      181 cgtccggctt tcgcgcgcag cgccgggctg gacgccgccg gcgatgcgct gcgcggcttc
      241 cttgcgcggc aacgagccgg catggaacac gtcgcgcaac tgccgctcga ccggctgcac
      301 gagcgcctgc acgcgctcgg cctcgacgac ggctatggcg cgcgcaccgg cctgccgctg
      361 gtcgccgagc ccgcctggct cgccctcgcc ggcttcgacc gctaccgacg cccgctgtgg
      421 ctgcatcccg ccgccgcgcg cgcctggtcg cacctgcagg cgaccgcgtc gcgggacggc
      481 gtcgtgctgg aggcgatctc cggctaccgc agccacgact accagctcgg catcttcgag
      541 cgcaagcgcg cgcgcggcct gtccgtcgac gacatcctcg ccgtcaacgc cgcgcccggc
      601 tacagctagc accattccgg ccacgcgctc gacatcggca cgcccgacga gccgccggcc
      661 gaggaatcct tcgaccgtac gcccgccttc gcctggctgc aggccaacgc cgccggcttc
      721 ggcttcgcga tgagctatcc gcgcgacaac ccgcacggca tcgtgtacga gccgtggcac
      781 tggcgctggt cggacgcaac ccgcgacgcc tgaggcgtcg tccttccgac cgccggccgc
      841 cgcctgcgga tgcttcctgg tggcgccgcg gcccgcgcat actgcgggcc atggacattc
      901 ccggcgacct cgccccgcaa ccacccaccc gggcccgttc actcgccgcg cgcttctacg
      961 ccgatccggc gatggtggcg ctcgaccgcc gcgcggtgtt cgaccgcgcc tggcagctgg
     1021 tcgcgcacga atgccagctg cgcgatgccg gcgaccatgt cgtcgccgac ctggccgggt
     1081 tgccggtgct ggcggtgcgc ggcgccgacg gcgcgggcgg gccgggtgaa atccgcgtgt
     1141 tccacaacgt gtgccgccac cgcgcggggc cgatcgccca gtgcgacggg ctcgcggcga
     1201 agtcgctgcg ctgccgctac cacggctgga cgtacacgct ggaaggccag ttgaggtctg
     1261 cgccggaaat gggcaccgcc gcggacttca acgtcggcga catcgccctg ccgcagctgg
     1321 cggtgcgcgt gtggcaggga ctggtgttcg cggcggtggc accggagcgc gcgccggact
     1381 tcgacgcgct cgtcgccggc atcgacgcgc gcctcgggcc cggccgtggt ttcgcccggt
     1441 acggccacca ccgtcgcgtc ggctacgacg tcgcctgcaa ctggaaggtg tacgtcgaca
     1501 actacctcga gggctaccac gtcccgcacg tgcacccggc gctcaaccgc ctgctcgact
     1561 accgcagcta cgtcaccgag gtcgaggcct ggcattcgct gcagtggagt ccgctggaaa
     1621 gcgacggcac gctgtacggc aacggcgacg ccctgtacta ctggctgtgg ccgaacacca
     1681 tgctcaacat cctgccggga cggctgcaga ccaaccgcat cgtgccgctc ggcgtggacc
     1741 gctgccgcgt ggagttcgac ttctactacc cggtcgatcc gtccgacgaa ggccatgccc
     1801 gccgcgaggc cgacctgtcg ttcagcgacg aggtgcagca cgaggacctc ggcatctgcg
     1861 aggacgtgca gcgcggcctc gcctccggtt cgtacgaacc gggccgcctg aacccgctgc
     1921 gcgagaccgc gctgctgcac ttccacgaac tgctgcgcgc ggcctaccgc gaggcgctgg
     1981 catgattccg gcgccgctgc gcggcggctg ccattgcgga aacctcgcgc tcacgctggc
     2041 gactgcgcag gatcccgccg cgctgcaccc gcgggcctgc gactgcgcct tctgcacgaa
     2101 gcatggcgcg ggatgggtct cggatcccga cggcgcgctc gcgatcggcg tgcgcgaggc
     2161 cgccgccctg ggcgactacc ggcagggcag cggcagcgcg cgtttcctgc tgtgccgcga
     2221 ttgcggcgtg ctggtggcgg tggtgcacga gggggacggc ggcctgcgcg gcgcggtgaa
     2281 cgcgcgctgc ctcgacgcag cgcggttcgg cgatgccgtg cgcgtgtcac cgcagcaact
     2341 gtcccgcgag gacaagatcg cgcgctgggg ccagctgtgg acgcccgcca cgctcgacgt
     2401 cggacgggac gccccgtgac ctcgaacgac acgccggcaa cgcctgcgcc gtcgcgcccg
     2461 ctgggtctct ggtccgccac cgcgctggtg gtcggcagca tgatcggcag cggcgtgttc
     2521 ctgctgcccg cctcgctcgc gccttacggc gcggccagcc tgctcggctg gggcgtgacc
     2581 ctgtgcggcg cgctgctgct cgcgctcacc ttcgcgcgca tggccggacg ctggccgcag
     2641 accggcggac cgtatgtgta cgcgcgcaac gtgttcggcg aactgccggg cttcgtggtc
     2701 gcgtggagct actgggtgtc gatctggtgc gccaacgcgg cgatcgcggt cgccttcgcc
     2761 ggcagcatcg gcgcgatctt ccccgccctc accgccacgc cgctgcgctc ggccgcgtgc
     2821 gcgctcggcg cgctgtgggc gtgcagcgcg gtcaacctcg ccggcgtccg cgaggccggg
     2881 cgcatgcagc tgctgaccac ggtgctgaag ttcgtcccgc tggtgctgtt cggcggcatc
     2941 gccctgtggt tcaccgacgc ccaccactac gtgccgttca accgcagcgg cgcgccgttg
     3001 ccgcaggtgg ccaatgcgac cgtcgcgctg acgctgtggg cgttcctcgg cctggaagcg
     3061 gccaccgttc cggcgggctc gatccacgac gcccagcgca ccgtgccgcg cgccaccgtc
     3121 ctcggcaccc tgctcgccgg cgtcgccacc atcctcgcct gcaccgccgt gctgggcctg
     3181 ctgccgggcg atgcgctggc gaactcgcag gcgccgatgg ccgacgccgc gcgcgcgctg
     3241 tgggggccgg ccgccggcat cgcgctggcg gtggtggcgg cgatctcgac cttcggcgcg
     3301 ctcaacggct gggtgctgat ctcggcgcag gtgccgctgg ccgcggcgac ggacggcctg
     3361 ctgccggcgc ggttcgcgcg ggtcgacgcg cgcggtacgc cggtgttcgg cgtgctggcg
     3421 agcagcgtgc tggcgacgct gctggtgttc gccaactaca gccagtcgct ggtgcagctg
     3481 ttcacctttt cgatcctgct ctcgaccgcg gccacgctgc tgccctacgt ggtcggcagc
     3541 gccgcgtggc tgtggcgcgg cccggcgcgg caccgcgtgg cgtcggcgct cgcgcttgcc
     3601 tacgggctgt acgcgctggc cggcaccggc ggcgaatcgc tgctctgggg cagcgcgctg
     3661 gtgctcgccg gagtgccggt ctactggtgg aaccgccggc gctgacgcgc gctacatccg
     3721 gtcggtcggc tccagcgccg ccgcttccgc caccggcgcg ggcacgcgcc ggtccgcctg
     3781 cagttcccag cgccagaagg cccacgccgc cagcgagaac gcccccgccg cgatcgccag
     3841 gtgcatcggc cggtcgctga tcagcggcga cagcacgccg gcgatcagcg cgttcgacac
     3901 caggctgccg aaggcctgca gcgacgatgc gctgccgcgc tggcgcggat acatgtcgag
     3961 gatggcgagg gtgaggatcg ggaacaccag cgccacgccg aacgcgttca ggctgatcgg
     4021 cagcaccgcc cacggcacct gcggctgcgg cacgaacagg ttgtaggcga tgttgagcac
     4081 cgcggcgagc ccgcagcagg tgaagccaag ctgcgcgagt cgctggccgc tgatccgccc
     4141 ggcggcgcgt cccgacacga acgcgccgag catcatcccg ccgatcatcg gcacgaagaa
     4201 ccaggcgaac tcgttctggc gcaggtgccg gccgtgcagg cgcagcagct ccagcacgaa
     4261 cgccggcgcc gaggcgatgt agacgaacag cgcgccgaag ttgaacgtgc ccgcggccgc
     4321 cagccgctgg aagcggcggt tggcgaggat cgccaggtag tcgcgcagca gcacgcgcgg
     4381 atgcggcttc agccgcgccc cgggcggatg cgtctccggc agcgccagcc acgtcgcgat
     4441 ccacagcagc gccgagaacg cgaccaggaa ccagaagatc gtcggccagc ggctccagcc
     4501 gaggatccag ccgccgatca ccggcgcgat cgccggcgcg atgccgaagg tcatcgacac
     4561 ctggctcatc agccgctgcg cgtcgtggcc gtgcaggacg tcgcggatca ccgcgcgccc
     4621 gacgatcagg cccacccccg cgctgagtcc ctgcacgacg cggaacagga gcagcgtcgg
     4681 caggtcgcgc gacagcgcgc aaccgaccga ggcgagcgtg aacaccgcga ggccggcgag
     4741 gatcacccgc ttgcgcccca ccgcatccga cagcgggccg tgcaccacgc tcatcagcgc
     4801 gtaggcgacc aggtaggcgc tgatcgtctg ctgcatggcg agcgtgtccg cgtgcagctg
     4861 cgcgccgatc tccgggaacg ccgggaagat cgtgtcgatc gagaacggcc cgaacatcgc
     4921 cagcgcgccg agcaggggcg cgagacggcg tggggagcgg gcgggggtat cggtcatcgg
     4981 gactcttgtg cttctggcag cggctgcagc cgcggtgcgc tttcctgcat ggcgacccgg
     5041 cccacgacgg acgcaggggc ttcctaggcg ggcgggcctt tcagttccac cacgttgcct
     5101 tcggggtcga acaggtactg cgacggcccc tcgccctcgg cgccatagcg cgagccgaac
     5161 tcgcccacgc gcgcgccgtg cgcctcgagg tgggccatga tcgccgcctt gtcgaagggc
     5221 tccacccgca ggcacaggtg gtccatgttg cggccctccg gcccgggcgc cgccccgccc
     5281 atgcggccga gcttgccgtc gaccggcacc aggtcgatca gcgaatcgcc ggcgcgcaat
     5341 tgcaccagtc cgatcgcgtc ctggcgccgt tcctcgcggc agccgagcac gtcgcagtag
     5401 aaggcctgca tcgccgcggc gtcgcgcacg cgcaggacca cgtggtcgat ccgctgcagg
     5461 tcgaacgggc gctgggacat gggactggct cgcggtgggg gcgcccatgg taagcggccg
     5521 cgccacgtcc ctcgccggcg gccggccaac gttcgccggc cggccatcgc cgggcccacc
     5581 cggctataat cccgcccgca gcacccggtg ggagaagcgg gcacgacccg ctgccgaagg
     5641 cgcaaacgcc cggaatcgct caggccccac aaccgccggt tgcacacact ctggagagac
     5701 cggccggcca ccctgatggc cagcgccggc gccgaagggg caagaagcgc ggagactccc
     5761 tccccacccg cgcttccaaa ctctcaggca aaaggacaga ggggcgcctc gccttcacaa
     5821 gcagcggcca cgccgccacg agacgccttc catgagccag agcccgcagc cccagaaccc
     5881 cgcgtcccgc gcgcccgccc ttcgcgacct cgaagaccac gacgcgttcc tgcagcgcca
     5941 catcggcccg aacgacgccg agatccggca catgctgggc gtggtcggcc acggctcgct
     6001 cgatgcgctc accgacgcga tcgtgccggc gaagatcaag tcgtccgccc cgctcgcgct
     6061 gccggcgccg gtgagcgaag tcgaggcgct ggccaaggtc cgcgcgatcg cggcgaagaa
     6121 ccaggtcttc cgcagcttca tcggccaggg ctactacggc acccacacgc cgaacgtcat
     6181 cctgcgcaac atcctcgaga accccgcctg gtacaccgcc tacacgccct accaggccga
     6241 gatctcgcag ggccgcatgg aagcgctgat caacttccag acgatgtgcg ccgacctcac
     6301 cggcatggag atcgcgaacg cgtcgctgct cgacgagggc accgcggccg ccgaggcgat
     6361 ggggatgatg gcgcgcctcg cgccgaagcg gcg
//
LOCUS       DATIQC010000456         4354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_29655, whole genome shotgun sequence.
ACCESSION   DATIQC010000456 DATIQC010000000
VERSION     DATIQC010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4354
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29655"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..607
                     /locus_tag="VLM17_09860"
     CDS             <1..607
                     /locus_tag="VLM17_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HSR65888.1"
                     /translation="YGVNHAKYAGEAIVSNASCTTNCLAPIAKVLNDKWGIKRGLMTT
                     VHAATATQRTVDGPSHKDWRGGRGILENIIPSSTGAAKAVGVVIPELNKKLTGMSFRV
                     PTSDVSVVDLTVELEKPASYAEICAEMKAQSEGALKGVLGYTEDKVVATDFVGDARTS
                     IFDAEAGIALDPTFVKLVSWYDNEWGYSNKCLEMVKVVAAR"
     gene            702..2417
                     /locus_tag="VLM17_09865"
     CDS             702..2417
                     /locus_tag="VLM17_09865"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_process: GO:0009966 - regulation of signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HSR65889.1"
                     /translation="MTPTDAPPRPWTLRREFARLLVLVGLLPALLFGGVLLASQYRQE
                     RDRLADRLAINSRLNAAAFEDFLDGQLAGVALLADRAGPRAADWPAELAALRDHYPAL
                     LTVLVTDAAGNRLHADPAARVLAGANASVADRDYFRIPRDTGQPYVSDAFLGRDLGHD
                     PLVAVAAPLLRDGRFDGIVEGSIRVDTFAALRAGALRQRHYALLLVDRYGHTIYAAPD
                     LGLRFLQPVPAALRAGTVPTADAGEGGMVRVADLLADGGDALVGRSRLHNGWTLLLVA
                     PEAELWTPILKAGVLMLVLVLAVGLGMVGASWWQGRLLGRGLERLLQSLRGFALGGVL
                     DLHRVQAMPEELQPLAGAIGDLSHRLNRTYDELNAALLRQSELSASLRTVVDAREREI
                     AQRTEELRGAVAQLDRLSRTDALTGCLNYRGSDDALRRLWEATRAGRAALSVLALDID
                     RFKDYNDRYGHQRGDNALKRFAGAVRSALFSPDDVLARQGGEEFLVFLPRATLEQALQ
                     VGGRIVASVAAAGIPHADSPEGVLTVSVGVAAIQPGEDADALLRRADAALYRAKRNGR
                     NRVSD"
     gene            2463..2864
                     /locus_tag="VLM17_09870"
     CDS             2463..2864
                     /locus_tag="VLM17_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group III truncated hemoglobin"
                     /protein_id="HSR65890.1"
                     /translation="MQADPVLTETDIARLVDRFYDKVQADPVLGPVFNPAVEDWDEHK
                     ATLVRFWSSVTLKTASYRGNPMAMHRPHPIRAEHFEHWLALWRETAAETLAPEHAALF
                     AEHASRIARSLMYGLGLDPHRRPLGLPIAGA"
     gene            2940..4118
                     /locus_tag="VLM17_09875"
     CDS             2940..4118
                     /locus_tag="VLM17_09875"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012445624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HSR65891.1"
                     /translation="MSILRMTDLDLSGKRVLVREDLNVPIEEGRITSEQRITAALPTL
                     RRALEQNAAVMVLSHLGRPKEGTWSEADSLAPVARRLSELLGREVPLVRDYLDGVQVQ
                     PGQVVLLENCRMNVGEAKDDEALAKRYAALCDVFVMDAFGTAHRAQASTHGVIREAKV
                     ACGGPLLMAELDALARALDNPARPLLAIVAGSKVSTKLELLSSLVGKVDQLIVGGGIA
                     NTFIAAEGHPVGKSLYEADLVGTAKRIQADANARGAHIPVPTDVVVAPRFAADAPATV
                     KAVDQVGADDMILDIGPQTAARYAGLVRDAGTVVWNGPVGVFEFDAFGKGTETIARAI
                     ADSQAFSIAGGGDTLAAVDKYGIEGDVSYISTGGGAFLEFLEGKELPAVAALKARGDA
                     "
     gene            complement(4138..>4354)
                     /locus_tag="VLM17_09880"
     CDS             complement(4138..>4354)
                     /locus_tag="VLM17_09880"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HSR65892.1"
                     /translation="AAALMLGWGFGTLGLHRVEADIDPRNEASRALLLRLGFRSEGRL
                     RERYRVDGEVSDTEYFGLLAPEWRARP"
BASE COUNT          604 a         1586 c         1575 g          589 t
ORIGIN      
        1 gtacggcgtg aaccacgcga agtacgctgg cgaggcgatc gtctccaacg cctcgtgcac
       61 caccaactgc ctggcgccga tcgccaaggt gctgaacgac aagtggggca tcaagcgcgg
      121 cctgatgacg accgtgcacg cggccaccgc cacccagcgc accgtcgacg gccccagcca
      181 caaggactgg cgcggcggcc gcggcatcct cgagaacatc atcccgtcga gcacgggcgc
      241 ggcgaaggcg gtgggcgtgg tgatccccga gctcaacaag aagctcaccg gcatgtcgtt
      301 ccgcgtgccg acctccgacg tctcggtggt cgacctcacc gtcgagctgg agaagcccgc
      361 cagctacgcc gagatctgcg ccgagatgaa ggcgcagtcg gaaggcgcgc tgaagggcgt
      421 gctcggctac accgaggaca aggtcgtggc caccgatttc gtcggggacg cgcgcacctc
      481 gatcttcgat gccgaggccg gcatcgcgct cgatcccacc ttcgtcaagc tggtcagctg
      541 gtacgacaac gagtggggct actcgaacaa gtgcctggaa atggtcaagg tggtggcggc
      601 gcgctgagcg ctcgccggcc ggccctcgcg aaagccccgt gccgcggggt tttcgcgtct
      661 gcggccgggc gcgacgcgaa atccggcagg gtcgcccggt gatgacgccg acggacgccc
      721 cgccccggcc ctggacgctg cggcgcgaat tcgcgcggct gctcgtgctg gtcgggttgc
      781 tgccggcgct gctgttcggc ggggtgctgc tggccagcca ataccgccag gagcgcgacc
      841 gcctcgccga ccggctggcc atcaacagcc gcctcaacgc cgcggcgttc gaggacttcc
      901 tcgacggaca actggccggc gtggcgctgc tggccgaccg cgccgggccg cgcgcggcgg
      961 actggccggc cgagctggcc gcgctgcgcg accactatcc cgcgctgctg accgtgctgg
     1021 tcaccgacgc ggcgggcaac cgcctgcatg ccgaccccgc cgcgcgcgtg ctggccggcg
     1081 cgaacgcgtc ggtggcggac cgcgactact tccgcattcc ccgcgacacc ggccagccgt
     1141 acgtttccga cgcgttcctc ggccgcgacc tgggccacga tccgctggtg gcggtcgccg
     1201 cgccgctcct gcgcgacggc cgcttcgacg gcatcgtcga gggttcgatc cgcgtcgaca
     1261 ccttcgccgc gctgcgcgcc ggcgcgctgc gccagcggca ttacgcgctg ctgctggtcg
     1321 accgctacgg gcacaccatc tacgccgcgc cggacctggg cctgcgcttc ctgcagccgg
     1381 tgccggcggc gctgcgcgcg ggcacggtcc cgacggccga cgccggcgaa ggcggcatgg
     1441 tgcgggtggc cgacctgctg gcggacggcg gcgatgcgct ggtcggccgc tcgcgcctgc
     1501 acaacggctg gacgttgctg ctggtggcgc ccgaggccga gctgtggacg ccgatcctca
     1561 aggcgggagt gctgatgctg gtgctggtgc tggcggtcgg cctcggcatg gtcggcgcgt
     1621 cgtggtggca ggggcgcctg ctcgggcgcg ggctggagcg gctgctgcag tcgctgcgcg
     1681 gcttcgcgct cggcggcgtc ctcgacctgc accgggtgca ggcgatgccg gaggaactgc
     1741 agccgctcgc cggcgcgatc ggcgacctgt cgcaccgcct caaccggacc tacgacgagc
     1801 tcaacgccgc gctgctgcgg cagagcgagc tgtcggcctc gctgcgcacc gtggtcgacg
     1861 cgcgcgagcg cgagatcgcg cagcgcaccg aggaactgcg cggcgcggtc gcccagctcg
     1921 accggctgag ccgtaccgac gcgctcaccg gctgcctcaa ctaccgcggc tccgacgacg
     1981 ccctgcgacg cctgtgggaa gccacgcgcg cgggccgcgc cgcgttgtcg gtgctggcgc
     2041 tggatatcga ccgcttcaag gactacaacg accgctacgg gcaccagcgc ggcgacaacg
     2101 cgctcaagcg cttcgccggc gcggtgcgca gcgcgctgtt ctcgccggac gacgtgctgg
     2161 cgcgccaggg cggcgaggaa ttcctggtgt tcctgccgcg cgcgacgctg gagcaggcgc
     2221 tccaggtcgg cgggcgcatc gtcgccagcg tcgccgccgc cggcatcccg cacgccgatt
     2281 cgccggaggg cgtgctcacc gtcagcgtgg gcgtcgcggc catccagccg ggcgaggacg
     2341 ccgacgcgct gctccggcgc gccgacgccg cgctgtaccg ggccaagcgc aacggccgca
     2401 accgcgtttc cgactagccc gggccagccg cggctcaggc ccggtgggcg acaatgcgca
     2461 ccatgcaggc cgatcccgtc cttaccgaaa ccgacatcgc ccgcctcgtc gaccgcttct
     2521 acgacaaggt gcaggccgac ccggtgctcg ggccggtctt caatccggcg gtcgaggact
     2581 gggacgagca caaggcgacg ctggtccgct tctggtcgtc ggtcacgctg aagaccgcga
     2641 gctaccgcgg caacccgatg gcgatgcacc gcccgcatcc gatccgcgcc gagcatttcg
     2701 agcactggct ggcgctgtgg cgcgagaccg cggcggagac actggcgccg gaacacgcgg
     2761 cgctgttcgc cgagcatgcg tcgcgcatcg cgcgcagcct gatgtacggc ctgggcctgg
     2821 atccgcaccg ccgtccgctc ggcctgccga tcgccggggc ctgacccgca tttgcccgcg
     2881 cccgtcccgg gccggaaaat accgggtgcc cgcgccgcgc gccgtccacg gaagagccca
     2941 tgtccatcct gcgtatgacc gacctcgacc tgtccggcaa gcgggtgctg gtccgcgagg
     3001 acctcaacgt gccgatcgag gagggccgca tcacctccga gcagcgcatc accgccgcgc
     3061 tgccgacgct caggcgcgcg ctggaacaga acgccgcggt gatggtgctc tcgcacctgg
     3121 ggcggccgaa ggaaggcacg tggagcgagg ccgattcgct ggcgccggtg gcgcgccgcc
     3181 tgtcggaact gctcggccgc gaggtgccgc tggtgcgcga ttacctcgac ggcgtgcagg
     3241 tgcagccggg gcaggtcgtg ctgctcgaga actgccgcat gaacgtcggc gaggcgaagg
     3301 acgacgaggc cctggcgaag cggtacgcgg cgctgtgcga cgtgttcgtc atggatgcgt
     3361 tcggcaccgc gcaccgcgcg caggcctcca cccacggcgt gatccgcgag gcgaaggtcg
     3421 cctgcggcgg gccgctgctg atggccgagc tcgacgcgct cgcgcgggcg ctggacaacc
     3481 cggcgcggcc gctgctggcg atcgtcgccg gcagcaaggt cagcaccaag ctcgagctgc
     3541 tgtcctccct ggtcggcaag gtcgaccagc tgatcgtcgg cggcggcatc gccaacacct
     3601 tcatcgccgc cgaagggcat ccggtgggca agtcgctgta cgaagccgac ctcgtcggga
     3661 ccgcgaagcg gatccaggcc gacgcgaacg cgcgcggcgc gcacatcccg gtgccgaccg
     3721 acgtggtggt cgcgccacgc ttcgccgccg atgcgccggc cacggtgaag gcggtcgacc
     3781 aggtgggcgc ggacgacatg atccttgaca tcggcccgca gaccgccgcg cgctacgcgg
     3841 gcctggtccg ggatgccggc accgtggtgt ggaacggtcc ggtcggcgtg ttcgaattcg
     3901 acgccttcgg caagggcacc gaaaccatcg cgcgcgcgat cgccgattcg caggccttct
     3961 cgatcgccgg cggtggcgac accctggccg cggtggacaa gtacggcatc gaaggcgacg
     4021 tgtcctacat ctccaccggc ggcggtgcgt tcctcgagtt cctcgagggc aaggaactgc
     4081 cggcggtggc ggcgctgaag gcgcgcggcg acgcctgatc cgcgtgtgcc cgcggcgcta
     4141 cggccgcgcc cgccactccg gcgccagcag gccgaaatac tcggtgtcgc tgacctcgcc
     4201 gtccacgcgg tagcgttcgc gcagccgccc ttcgctgcgg aagccgagcc gcagcagcag
     4261 cgcgcgcgag gcttcgttgc gcgggtcgat gtcggcctcg acgcgatgca ggccgagcgt
     4321 gccgaagccc caccccagca tcagcgcggc cgct
//
LOCUS       DATIQC010000457         4641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_488853, whole genome shotgun sequence.
ACCESSION   DATIQC010000457 DATIQC010000000
VERSION     DATIQC010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488853"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..444
                     /locus_tag="VLM17_09885"
     CDS             61..444
                     /locus_tag="VLM17_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HSR65893.1"
                     /translation="MAMKKKTAAKKAAPKAAAKPAAMKPIKEALGKSGLVAHISENTG
                     VAPRDVRAVLATLENTVHASVSKKGAGNFTLPGLLKINVVNVPAKPKRKGINPFTKEE
                     QWFAAKPATVKVKVRPLKKLKDAAA"
     gene            602..808
                     /locus_tag="VLM17_09890"
     CDS             602..808
                     /locus_tag="VLM17_09890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65894.1"
                     /translation="MPRAVEIRSHALEPGLRPAFDALMRGQALPLLREAGVVACGPSL
                     PDADAYCLIRAWRDLTTLQGLRDA"
     gene            805..1176
                     /locus_tag="VLM17_09895"
     CDS             805..1176
                     /locus_tag="VLM17_09895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65895.1"
                     /translation="MSESAHPRFFDAFPMRAVTARDLDAALADDARVRVLFLWGRDCP
                     NCDLAKGDLLRAPERFQWADVDWLHDNVYDDRAMAVRFGLHGIPAFLVFRGARKLGRI
                     TPWPGADAFVAAIGRVRRGEA"
     gene            1389..1814
                     /locus_tag="VLM17_09900"
     CDS             1389..1814
                     /locus_tag="VLM17_09900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65896.1"
                     /translation="MDKRFWICGLVVSIAALLLDFLVHGLLLQGDYDALVARGLMRAP
                     ADAQHYLPYMLAAHLLLGYGLTWLYRQGVDRARPAVGQGLRFGAAIALVATIPGYLIY
                     YAVQPLPPALVHKQLLFGSAATLLLGLLLAWLQPGRRAL"
     gene            1895..2455
                     /locus_tag="VLM17_09905"
     CDS             1895..2455
                     /locus_tag="VLM17_09905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65897.1"
                     /translation="MHRRHLLQGAALLLAAPLSACSTLGAVAGLLGNQLVFSAPQLQG
                     YLDKRFPRDYDKLGGLVTLSVLHPRLSIPQGSDRLRLDFDVGFGMLGRGTTPSGHIAI
                     ASGLRFDPQTRGLHLDAPTLEQADVPSLGGALGGSGRDLVDRWLADYARDEPVYRFDQ
                     GLWQRLGARRIGATTIEHGQVVVHLQ"
     gene            2464..3168
                     /locus_tag="VLM17_09910"
     CDS             2464..3168
                     /locus_tag="VLM17_09910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65898.1"
                     /translation="MRPLLALPALLAFALAGCHRDAAPAAGDAASAGEDGTPLPGPAP
                     AGGPVTGMPSRPGPGPVGLPAASSTGTPAAPAEGLPPEPGASPAASATAVDATATTAP
                     AAIPAAPEPTPEDAVAVVRSYYAALAGHDFARAQSLWADGGEPGGHAAAQLASEYGDA
                     AALEATAGAPGRMDAAAGSRYLRVPVAVTLTLRDGSVQRMTGTLTLRRAVVDGATAEQ
                     RAWRIASTDLRAAPAP"
     gene            complement(3170..>4641)
                     /locus_tag="VLM17_09915"
     CDS             complement(3170..>4641)
                     /locus_tag="VLM17_09915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5916 domain-containing protein"
                     /protein_id="HSR65899.1"
                     /translation="SDDLVVNFSANETFFSDKRPFFTENQGPFEFTTPSDNSQLVYTR
                     RVGGRADDGSGAGDITAAVKLNGSFGGANKYGLLVADEADAVGRSFAAFRLSHDFADQ
                     NLGMLLTRVDHPYLDRTATVLGVDQNWRPTAKLNVQNRLIVSQVDDAGETTRGSGFTT
                     MVDYEMQAGWRQQWIGMHFGEDLQINDFGYLSRANLNYGHWQVMHRVTDLPAGSSFAS
                     HDWRWRVSATDNDQGLALQRQFRASVQSVLRDGGAQYAQVNVNSAGYEDRLLRGNGIV
                     RLPPSFNTFFERSRPRQGQGRWELYGNVGFDDSGIGDAASGNRRHVGFNAQFKPTYFI
                     NDAFSVYALLYAEHTPQWMVWSRDNLLGTFDEHALQLDAGINWNIGNRQELRVKLQAL
                     GLDARLRQAWRVGADGTPLPVANAGDDRIDDFSLSNLGFQVRYRYELAPLSYLYVVYG
                     RGGDLFNETSTRTQQALGDAFSLRDSEQLLVKLSYRFEL"
BASE COUNT          617 a         1685 c         1649 g          690 t
ORIGIN      
        1 cattccgcgt gccgaggggg aaatcctggc gacccatcca ttccatcgag taccaaccac
       61 atggcgatga agaagaagac cgcggcgaag aaggccgccc cgaaggcggc tgccaagccg
      121 gccgcgatga agccgatcaa ggaagcgctg ggcaagtccg gcctggtcgc gcacatttcc
      181 gagaacaccg gcgtggcgcc gcgcgacgtg cgcgccgtgc tggcgacgct cgagaacacc
      241 gtgcacgcct ccgtcagcaa gaagggcgcg ggcaacttca ccctgccggg cctgctgaag
      301 atcaatgtcg tcaacgtgcc ggcgaagccg aagcgcaagg gcatcaaccc gttcaccaag
      361 gaagagcagt ggttcgccgc caagccggcc accgtcaagg tgaaggtgcg tccgctcaag
      421 aagctcaagg acgccgcggc ctgagccgag gttgcctgcg cggacggctc gccgtccgct
      481 tcgaaagggc cgggtttccg gccctttttc tttggccttt cgtgcggcat cggcgccgga
      541 gcgcggtgcg ggccacgggc gcgcgggacg ggggtcgacg gcggcgcgct accatccgcc
      601 gatgccgcgc gccgtcgaaa tccgcagcca tgcgctcgag ccgggcctgc gcccggcatt
      661 cgacgcgctg atgcgcgggc aggcgctgcc gctcctgcgc gaagccggcg tggtggcctg
      721 cggtccgtcg ctgccggacg cggatgcgta ctgcctcatc cgcgcgtggc gcgacctcac
      781 caccctccaa ggcctgcgcg acgcatgagc gaaagcgcgc acccgcgttt cttcgacgcc
      841 ttcccgatgc gggcggtgac cgcgcgcgac ctcgacgccg cgctcgccga cgacgcgcgc
      901 gtgcgggtgc tgttcctgtg gggccgggac tgtcccaact gcgacctcgc caagggcgac
      961 ttgctgcgcg cgcccgagcg cttccagtgg gccgacgtcg actggctgca cgacaacgtc
     1021 tacgacgacc gcgcgatggc ggtccggttc ggcctgcacg gcatcccggc cttcctggtc
     1081 ttccgcggcg cgcgcaagct gggccggatc acgccgtggc cgggcgcgga cgccttcgtc
     1141 gccgcgatcg gccgggtgcg acgcggcgaa gcctgacccg tgcggcggcg tacccggggc
     1201 cggcaccgcg gccttcgcgg tcggaacacg cactggacca gggccgggca cctgtcgcct
     1261 tgaaggcggc gcccttccct ccgcgggagg ctggcctcct gcacctgggc cgtgcatggc
     1321 gcggtgaaga atcggcggca ctggcctaca ctcggcgcgc cgcgcacggc ggccctgggg
     1381 ggacggcgat ggacaagcgc ttctggatct gcggcctggt ggtgtcgatc gccgcgctgc
     1441 tgctcgattt cctcgtgcat ggcctgctgc tgcagggcga ctacgatgcg ctcgtcgccc
     1501 gcgggctgat gcgtgcgccc gccgacgcgc agcactacct gccctacatg ctcgccgcgc
     1561 acctgctgct cggctacggg ctgacctggc tgtaccggca gggcgtcgac cgcgcccgtc
     1621 ccgccgtcgg ccagggcctg cgcttcggcg cggcgatcgc gctggtcgcc accatcccgg
     1681 gctacctcat ctattacgcc gtgcagccgc tgccgccggc gctggtgcac aagcagctgc
     1741 tgttcggtag cgcggcaacg ctgctgctcg gcctgctgct ggcgtggctg cagccggggc
     1801 gcagggcgct gtgagcgaac ctgcgcggcc gcgcgtgatg cgccattcac ccgctgcggg
     1861 cgatggtgcc ggcaggccac cgggagcact gcgcatgcat cgtcgccatc tgctgcaggg
     1921 agccgcgctg ctgctcgcag cgccgctgtc cgcctgctcc accctcggcg cggtcgccgg
     1981 gctgctcggc aaccagttgg tgttcagcgc accgcagctg cagggctatc tcgacaagcg
     2041 cttcccgcgc gactacgaca agctcggcgg actggtcacg ctgagcgtgc tgcatccacg
     2101 cctgagcatc ccgcagggca gcgaccgcct gcggctggat ttcgacgtcg gcttcggcat
     2161 gctcggccgc ggcaccacgc cgtccggcca catcgcgatc gccagcggcc tgcgcttcga
     2221 tccgcagacg cgcggcctgc acctcgacgc gcccacgctc gaacaggccg acgtgccttc
     2281 cctcggcggc gcgctcggcg gctccggccg cgacctcgtc gaccgctggc tcgccgacta
     2341 tgcgcgcgac gagccggtct accgtttcga ccagggcctg tggcaacgac tgggtgcgcg
     2401 ccgcatcggg gccacgacca tcgagcacgg ccaggtcgtc gtgcacctgc aatgagacct
     2461 gccatgcgcc ccctgctcgc cctgcctgcc ctgctcgcct tcgccctcgc cggctgccac
     2521 cgcgatgccg cccctgccgc cggcgatgcc gccagcgccg gcgaggacgg cacgccgctc
     2581 ccggggccgg cgccggccgg cgggccggtg accggcatgc catcgcggcc ggggccgggg
     2641 ccggtcggcc tgcctgccgc atcgtccacc ggcacgcccg cggcgccggc ggaaggcttg
     2701 cccccggaac cgggcgcttc gcccgcggcc agcgcgacgg cggtggatgc cactgccacg
     2761 accgcgccgg cagcgatccc ggccgcgccg gaaccgacgc ccgaggacgc cgtggcggtg
     2821 gtgcgcagct actacgccgc gctcgcgggc cacgatttcg cccgcgcgca gtccctgtgg
     2881 gccgatggcg gcgaacccgg cgggcacgcc gccgcgcagt tggccagcga gtacggcgac
     2941 gccgctgccc tggaggcgac ggccggcgcg cccggccgca tggacgccgc ggccggctcg
     3001 cgctacctca gggtgccggt cgcggtgacg ctgaccctgc gcgacggcag cgtgcagcgg
     3061 atgacgggga ccctcaccct gcgccgcgcc gtggtcgacg gcgccaccgc cgagcagcgc
     3121 gcctggcgca tcgcctcgac cgacctgcgc gccgcgccgg cgccgtgaat cacagctcga
     3181 accggtagct cagcttgacc agcaactgct cgctgtcgcg cagcgagaac gcatcgccca
     3241 gcgcctgttg cgtgcgcgtc gaggtctcgt tgaacaggtc gccgccgcgg ccatacacca
     3301 cgtagaggta ggacagcggc gccagctcgt agcggtagcg cacctggaag ccgaggttgc
     3361 tcaggctgaa gtcgtcgatg cggtcgtcgc cggcattggc caccggcagc ggcgtcccgt
     3421 ccgcgccgac gcgccaggcc tggcgcagcc gcgcatccag cccgagcgcc tgcagcttga
     3481 cccgcagttc ctgccggttg ccgatgttcc agttgatgcc ggcgtcgagc tgcagcgcat
     3541 gctcgtcgaa ggtgccgagc aggttgtccc ggctccagac catccattga ggcgtgtgct
     3601 cggcatacag cagcgcatac acgctgaagg cgtcgttgat gaaataggtc ggcttgaact
     3661 gcgcattgaa gccgacgtgg cgccggttgc cgctggccgc gtcgccgatg ccgctgtcgt
     3721 cgaaaccgac gttgccgtac agctcccacc ggccctggcc ctggcggggc cgcgaacgct
     3781 cgaagaaggt gttgaagctg ggcggcaggc ggacgatgcc gttgccccgc aggaggcggt
     3841 cctcgtagcc ggccgagttg acgttgacct gcgcgtactg ggcgccgcca tcgcgcagca
     3901 cgctctgcac gctggcgcgg aactgccgct gcagcgcgag gccctggtcg ttgtcggtcg
     3961 cgctgacgcg ccagcgccag tcgtgcgagg cgaagctgga gcccgcgggc aggtcggtga
     4021 cgcggtgcat cacctgccag tgcccgtagt tgaggttggc gcgcgagagg tagccgaaat
     4081 cgttgatctg caggtcttcg ccgaaatgca tgccgatcca ctgctggcgc caccccgcct
     4141 gcatctcgta gtcgaccatg gtggtgaagc cgctaccgcg cgtcgtctcg ccggcgtcgt
     4201 cgacctggct gacgatcagc cggttctgca cgttgagctt cgcggtcggc cgccagttct
     4261 ggtcgacgcc gagcacggtc gcggtgcggt ccaggtaggg atggtcgacc cgcgtgagca
     4321 gcatgcccag gttctggtcg gcgaagtcgt ggctcaggcg gaacgcggcg aagctgcgtc
     4381 ccaccgcgtc cgcctcgtcg gcgacgagca ggccgtactt gttggcgccg ccgaaactgc
     4441 cgttgagctt gaccgcggcg gtgatgtcgc cggccccgct gccgtcgtcg gcgcggccgc
     4501 cgacgcggcg ggtgtagacc agctggctgt tgtcggacgg ggtggtgaat tcgaacggcc
     4561 cctggttctc ggtgaagaac ggccgcttgt cgctgaagaa ggtttcgttg gcgctgaagt
     4621 tgaccaccag gtcgtcgctt t
//
LOCUS       DATIQC010000458         3889 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_64475, whole genome shotgun sequence.
ACCESSION   DATIQC010000458 DATIQC010000000
VERSION     DATIQC010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3889
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64475"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..694)
                     /locus_tag="VLM17_09920"
     CDS             complement(<1..694)
                     /locus_tag="VLM17_09920"
                     /inference="COORDINATES: protein motif:HMM:NF024743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat-containing
                     protein"
                     /protein_id="HSR65900.1"
                     /translation="MRHHVLLSALCAALASPALFAATPIDQTRPLDPRGRVEIDNLKG
                     RIQVRAWNRNEVKLSGSLGDGVERLVVEGGGDHLVVKVQYPRQIGVWRSDRSGPTDLQ
                     LQVPLQASLEIDSVSANVDVDGVASPSLSVDTVSGQVVIAAAPGSADINSVSGDQRLT
                     LNSREVKVQSVSGDIDLRGRLGGEVHAETVSGQLAVDSNGSALRQLSSNSVSGDTTLR
                     IALDHGAEVKSET"
     gene            complement(719..1228)
                     /locus_tag="VLM17_09925"
     CDS             complement(719..1228)
                     /locus_tag="VLM17_09925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65901.1"
                     /translation="MNHDDFDRMHDDVADSRLRLALRGLRRDTLPERDLWPQLAARLA
                     QAPRQVAAPRTRHWMPALALAASLVLAVGIAWQLRPASRPDPSAQLIQREAQAMTREY
                     RAALFELERSAPPPAASPVAPALDDLDRSAAQIRTALARDPDARFLLERLRRTYAQRL
                     ALTQRAALT"
     gene            complement(1225..1836)
                     /locus_tag="VLM17_09930"
     CDS             complement(1225..1836)
                     /locus_tag="VLM17_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HSR65902.1"
                     /translation="MLTATVTEWLPQTARPAGPADAGSSADADQPLARAAARGDLAAF
                     EALYRRHLGRVHGVIARLVGHHGARAEDLTQDTFVRAWQALPGYRFESAFGTWLHRLA
                     VNTALMDLRAGRSRPSLDGDEDALAELGTQDSAGHATALGLDLERAVASLPPRARAVL
                     VLYDVEGWKHEEIAEELGMAVGSSKAQLHRARGLLRARLGAHA"
     gene            complement(1904..3238)
                     /locus_tag="VLM17_09935"
     CDS             complement(1904..3238)
                     /locus_tag="VLM17_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012439319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR65903.1"
                     /translation="MRLSYALAAAITVAIASTANAQSAQAPAPARTALHAARLLDVDS
                     GRVLHDAWVVVDGERIASVGEGGGAPAGAKVVELGDVTLLPGLIDVHVHLTSDPTVST
                     GNYYQDALTLGPMDYAVVAPTLARRTLDAGFTTVRNVGAGDYIDVALRNAIDRGQLVG
                     PRILAATVAIGSTGGHADDSTGFSPNVEFAGITGVANGVEGVRERVRENVKRGADVIK
                     FMASAGVLSNEASVGAPQYTQEEMDAIVDEAHRWGKKVAAHAHGAEAIKMAIRAGVDS
                     VEHCSMIDAEGLKLAKQKGTFLDFDVYNDDYILTEYAKLGVPQAQIEKEKLVGRVQRE
                     NFRKAVQAGEKMAFATDAGVYPHGWNAKQFAKEVEWGMTPLQAIRSATTNAAELLGWS
                     DKVGSLAPGHYADVVAVPGDPLADVRTLEHVSFVMKGGQVVKGGPAAAAAQP"
     gene            3463..>3889
                     /locus_tag="VLM17_09940"
     CDS             3463..>3889
                     /locus_tag="VLM17_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HSR65904.1"
                     /translation="MFDYIIVGAGSAGCVLANRLSEDPAVRVLLLEAGPRDWHPFIHM
                     PAGLARLAGNTRINWNYDTVPQPGLGGRTIWWPRGKVLGGSSSINAMCYIRGVPGDYD
                     DWARSASGWDWDSVLPYFRRAEGNTRGADALHGADGPLGV"
BASE COUNT          476 a         1410 c         1444 g          559 t
ORIGIN      
        1 ccgtttcgga cttgacctcg gccccgtggt cgagcgcgat gcgcagcgtg gtgtcgcccg
       61 acacgctgtt gctcgacagc tggcgcagcg cactgccgtt gctgtcgacc gcgagctggc
      121 cggacaccgt ctccgcatgc acctcgccgc cgaggcggcc gcgcaggtcg atgtcgccgc
      181 tcacgctctg caccttcacc tcgcggctgt tgagggtgag gcgctggtcg ccgctgacgc
      241 tgttgatgtc ggcgctgccg ggcgcggcgg cgatcaccac ctgcccgctc accgtgtcga
      301 ccgacagcga gggcgaggcg acgccgtcga cgtcgacgtt ggccgagacg gaatcgatct
      361 cgaggctggc ctgcagcggc acctgcagct gcaggtcggt gggcccgctg cggtcgctgc
      421 gccacacgcc gatctgcctg gggtactgca ccttgacgac gaggtggtcg ccgccgcctt
      481 ccaccaccag ccgctcgacg ccgtcgccga gcgagccgct cagcttgacc tcgttgcggt
      541 tccaggcgcg cacctggatg cgccccttga ggttgtcgat ctcgacccgg ccgcgtggat
      601 cgagcgggcg ggtctggtcg atgggcgtgg cggcgaacag cgcggggctg gcgagcgcgg
      661 cgcacagggc ggacagcagg acgtggtgac gcatggcgac ctccggggaa ggcatcgatc
      721 aggtgagcgc ggcgcgctgg gtgagcgcga gccgctgggc ataggtgcga cgcaggcgtt
      781 cgagcaggaa acgcgcgtcc ggatcgcggg cgagcgcggt gcggatctgc gcggcgctgc
      841 ggtcgaggtc gtcgagcgcg ggcgcgaccg gcgacgcggc cggcggcggc gcgctgcgct
      901 cgagctcgaa cagcgccgcg cggtattcgc gggtcatcgc ctgcgcctcg cgctggatca
      961 gctgcgcgga gggatccggc cgcgaggcgg gccgcagctg ccacgcgata ccgaccgcca
     1021 gcaccagcga ggcggccagc gcgagcgccg gcatccagtg ccgcgtgcgc ggcgcggcca
     1081 cctgccgcgg ggcctgcgcg aggcgtgcgg caagctgcgg ccacaggtcg cgctcgggca
     1141 gcgtgtcgcg gcgcaggccg cgcagggcga ggcgcaggcg gctgtcggca acgtcgtcgt
     1201 gcatgcggtc gaagtcgtcg tggttcatgc gtgtgctccc agacgcgcgc gcagcaggcc
     1261 gcgcgcgcga tgcagctgtg ccttggaact gccgaccgcc atgccgagct cctcggcgat
     1321 ctcctcgtgc ttccagccct ccacgtcgta cagcaccagc accgcgcggg cgcgcggcgg
     1381 gagggaggcg acggcgcgct cgaggtcgag gccgagcgcg gtggcgtggc cggccgaatc
     1441 ctgggtgccg agttcggcga gcgcatcctc gtcgccgtcc agcgaagggc ggctgcgccc
     1501 cgcgcgcagg tccatcagcg cggtgttgac cgcgagccgg tgcagccagg tgccgaaggc
     1561 gctttcgaac cggtagcccg gcagcgcctg ccacgcgcgc acgaaggtgt cctgggtcaa
     1621 atcctcggcg cgcgcgccgt ggtggccgac cagccgcgcg atgacgccgt ggacgcggcc
     1681 gagatggcgg cggtacagcg cctcgaacgc ggccaggtcg ccgcgcgccg ccgcacgcgc
     1741 gagcggctgg tcggcgtccg ccgacgaccc ggcgtcggcc gggccggcgg ggcgcgctgt
     1801 ctggggcagc cactcggtca cggtcgcggt cagcatatcc actcggatgc gccgccgcgg
     1861 ccgcgggttt aaggcgcgcg cgtcgccgtc gccggcgcgg ggcttacggc tgcgccgcgg
     1921 cggccgccgg accgcccttc accacctggc cgcccttcat cacgaaggac acgtgctcga
     1981 gggtcctgac gtcggccagc gggtcgccgg ggaccgcgac cacgtcggcg tagtggcctg
     2041 gcgcgagcga gcccaccttg tcgctccagc ccagcagctc ggccgcattg gtggtcgccg
     2101 agcggatcgc ctgcagcgga gtcatgcccc actccacttc cttggcgaac tgcttcgcgt
     2161 tccagccatg cgggtacacg ccggcatcgg tggcgaaggc catcttctcg cccgcctgca
     2221 ccgccttgcg gaagttctcg cgctgcacgc ggccgaccag cttctccttc tcgatctgcg
     2281 cctgcggcac gccgagcttg gcgtactcgg tgaggatgta gtcgtcgttg tagacgtcga
     2341 agtcgaggaa ggtgcccttc tgcttcgcca gcttcaggcc ctcggcgtca atcatgctgc
     2401 agtgttcgac cgagtcgacg ccggcgcgga tcgccatctt gatcgcctcg gcgccgtgcg
     2461 cgtgcgcggc gaccttcttg ccccagcgat gcgcctcgtc gacgatcgcg tccatttctt
     2521 cctgcgtgta ctgcggcgcg cccacggacg cctcgttgct gagcacgccg gcgctggcca
     2581 tgaacttgat cacgtcggcg ccgcgcttga cgttctcgcg cacgcgctcg cgcacgccct
     2641 cgaccccgtt ggcgacgccg gtgatgccgg cgaactcaac gttcggcgag aagccggtgc
     2701 tgtcgtccgc atggccgccg gtcgagccga tcgccaccgt cgcggcgagg atgcgcgggc
     2761 cgacgagctg gccgcggtcg atggcgttgc gcagggcgac gtcgatgtag tcgccggcgc
     2821 cgacgttgcg cacggtggtg aagccggcat cgagcgtgcg tcgcgccagc gtcggcgcaa
     2881 ccaccgcgta gtccatcggc ccgagcgtga gcgcgtcctg gtagtagttg ccggtgctga
     2941 ccgtcggatc ggacgtcagg tggacgtgca cgtcgatcag gccgggcagc agggtgacgt
     3001 cgccgagctc gaccaccttc gcgccggccg gggcgccgcc gccttctccg acgctggcga
     3061 tgcgctcgcc gtcgaccacc acccaggcgt cgtgcagcac gcggccgctg tcgacgtcca
     3121 gcaggcgcgc ggcgtgcagc gcggtgcgcg ccggggcggg cgcctgcgcc gactgggcgt
     3181 tggcggtgga agcgatcgcc acggtgatcg cggcggcgag ggcgtaggac aggcgcatgc
     3241 ggggtctccg gaaagtcgcg cgatcatcgc acgcgggcac gccgctccgg cgcgacggcg
     3301 gtcgcgcccg ggccggctcc gcctctccgc cagggcccgg gtccgcgccg ccagcgccag
     3361 cgtggtgcgg cgcgctccag cgcgcacgac ggcgcccgct tcccggcgcg catgccgcgg
     3421 gggacaatcc ctccgtcgcc gcgcgcatcc ggaacccacc cgatgttcga ctacatcatc
     3481 gtcggcgccg gctccgccgg ctgcgtgctc gccaatcgcc tgtccgagga cccggccgtg
     3541 cgcgtgctgc tgctggaagc cggcccgcgc gactggcatc ccttcatcca catgccggcc
     3601 ggcctcgccc gcctcgccgg caacacgcgc atcaactgga actacgacac cgtgccgcag
     3661 ccgggcctgg gcggccgcac gatctggtgg ccgcgcggca aggtgctcgg cggctccagt
     3721 tcgatcaacg cgatgtgcta catccgcggc gtgcccggcg actacgacga ctgggcccgc
     3781 tccgcctcgg gctgggactg ggactcggtg ctgccctact tcaggcgtgc cgaaggcaac
     3841 acccgcggcg cggacgcgtt gcacggcgcc gacggtccgc tcggggtct
//
LOCUS       DATIQC010000459         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_29705, whole genome shotgun sequence.
ACCESSION   DATIQC010000459 DATIQC010000000
VERSION     DATIQC010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29705"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VLM17_09945"
     CDS             <1..406
                     /locus_tag="VLM17_09945"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HSR65905.1"
                     /translation="AAALDVARANATRHGIANVEFRDGDWWAPLGGARFDLVASNPPY
                     IAERDPHLSQGDLRFEPPAALSSGLDGLDAIRAIVRDAPAHLAAGGWLLLEHGYEQGD
                     AVRALLGAAGFRDVVTRQDLEARDRVTLGRHS"
     gene            486..1430
                     /gene="pip"
                     /locus_tag="VLM17_09950"
     CDS             486..1430
                     /gene="pip"
                     /locus_tag="VLM17_09950"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HSR65906.1"
                     /translation="MRTLYPEIEPFDTGTLRVDDRHALYYEQCGNPEGKPVVLLHGGP
                     GAGCSAKMRRFHDPAKYRIVLFDQRGAGRSTPHADLVGNTTWELVADIEKLRDALGID
                     RWQVFGGSWGSTLALAYAEAHPQRVTELVLRGIFMLRRWELEWFYQEGASRLFPEAWE
                     HYLAAIPPVERHDLISAFHRRLTSDDEATRLAAARAWSVWEGATSFLHVDPDFIAGHE
                     DAAFALAFARIENHYFVNGGFFETEDQLLRDAHRIAAIPGVIVHGRYDVVCPIQNAWE
                     LHKAWPKADLVVTPASGHSAFEAENVDALVRATDAFAA"
BASE COUNT          213 a          570 c          525 g          221 t
ORIGIN      
        1 cgcggccgcg ctcgacgtcg cgcgtgcgaa cgccacgcgc cacggaatcg ccaatgtcga
       61 gttccgcgac ggcgactggt gggcgccgct cggcggggcg cgcttcgacc tcgtcgccag
      121 caatcccccc tacatcgccg agcgcgaccc ccacctgtcg cagggcgacc tgcgcttcga
      181 accgcccgcc gcgttgtcct ccggcctcga tgggctcgat gcgatccgtg cgatcgtgcg
      241 cgacgcgccg gcccacctcg ccgcgggtgg ctggctgctg ctcgagcatg gctacgaaca
      301 gggcgatgcg gtccgcgcgc tgctgggcgc cgccggcttc cgcgacgtgg tcacgcgcca
      361 ggacctcgag gcgcgtgatc gcgtcaccct ggggcgccat tcctgatcgt ccggcgaggg
      421 cgcgcgcgtc cggccgccgg cagcggccac ggtagaatcc gcgttccccc gccgcggacg
      481 cttccatgcg caccctctat cccgagatcg agcccttcga caccggcacg ctgcgcgtcg
      541 acgatcgcca tgccctctac tacgagcagt gtggaaatcc ggagggcaag ccggtggtgc
      601 tgctgcacgg aggcccgggt gcgggctgca gcgcgaagat gcgccgcttc cacgatccgg
      661 cgaagtaccg gatcgtgctg ttcgaccagc gtggcgccgg gcgctccacc ccgcatgccg
      721 acctcgtcgg caacaccacc tgggaactgg tggccgacat cgagaagctg cgcgatgcgc
      781 tcggcatcga ccgctggcag gtgttcggcg gcagctgggg ctcgaccctc gcgctggcct
      841 acgcggaagc ccatccgcag cgcgtcaccg aactcgtgct gcgcggcatc ttcatgctgc
      901 ggcgctggga gctggagtgg ttctaccagg aaggcgcctc gcggctgttc ccggaggcat
      961 gggagcacta cctcgcggcg atcccgccgg tcgagcgcca cgacctgatc agcgccttcc
     1021 atcgccgcct cacctcggac gacgaagcca cccgcctcgc ggccgcgcgc gcgtggagcg
     1081 tgtgggaagg cgcgaccagt ttcctgcacg tggacccgga cttcatcgcc ggccacgagg
     1141 acgcggcgtt cgcgctcgcc ttcgcccgca tcgagaacca ctacttcgtc aacggcggct
     1201 tcttcgaaac cgaggaccag ctgctgcgcg acgcgcaccg gatcgcggcg atccccggcg
     1261 tgatcgtgca cggtcgctat gacgtcgtct gcccgatcca gaacgcgtgg gagctgcaca
     1321 aggcctggcc gaaggcggac ctggtggtga cgccggcatc gggccactcg gcgttcgagg
     1381 cggagaacgt cgatgcattg gtgcgcgcga ccgacgcgtt cgccgcgtag cgcggggacg
     1441 tcgccgcgcg tcagtcgcgc agccgcagca ccaggcccag ccgcgcgacc ggcgtccagg
     1501 cgccatccgt accccgttcg ccgcccagg
//
LOCUS       DATIQC010000460         2408 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_277354, whole genome shotgun sequence.
ACCESSION   DATIQC010000460 DATIQC010000000
VERSION     DATIQC010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277354"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /gene="hemC"
                     /locus_tag="VLM17_09955"
     CDS             complement(<1..721)
                     /gene="hemC"
                     /locus_tag="VLM17_09955"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HSR65907.1"
                     /translation="MAILRIATRKSPLALWQTEHVAERLRAAHPGLQVELVPLSTRGD
                     EVLDRSLAAIGGKGLFLKELELAMQRGEADCAVHSLKDVPMELEPGFALPAILQRADP
                     ADAFVSNRFDALDALPRGARVGTSSLRRQAQLRARRPDLRLVDLRGNVNTRLAKLDAG
                     DYDAIVLACAGLQRLGFDARIRARLVSPDWLPAPAQGAIAIECRDGDAATQALCAALD
                     HTDTHTCAEAERAMNRALHGSC"
     gene            complement(782..1138)
                     /locus_tag="VLM17_09960"
     CDS             complement(782..1138)
                     /locus_tag="VLM17_09960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65908.1"
                     /translation="MALLDCPECKREYSDQAAACVHCGARNPAHRKPTPLILKLLLGI
                     VVLFVTFIGLGLVLEMADPTSGQRNDDRSAIEYCESEYARLEDDPRMTRGALGLAYGA
                     CEKLKDDFRRKWNREP"
     gene            complement(1149..1877)
                     /locus_tag="VLM17_09965"
     CDS             complement(1149..1877)
                     /locus_tag="VLM17_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR65909.1"
                     /translation="MRVVIVDDEPLARARLRELLAEQPGVAVVAEAGDGHAALHACAE
                     QQPDLVLLDIQMPGIDGLETARHLAAFEPRPAVVFCTAFDAHALSAFDAQAIDYLVKP
                     VRPERLAAALERVRTFAAGRGQAATAPSGQRRTHLCARMRGSLRLIPIEDVHYLQAEE
                     KYVVVHHARGEDLIEESLKSLEEEFGERFVRIHRNCLVARHEIVELKRAADGHVQAVL
                     RHGKQPLEVSRRCVAHLRETIKHL"
     gene            complement(1933..>2408)
                     /locus_tag="VLM17_09970"
     CDS             complement(1933..>2408)
                     /locus_tag="VLM17_09970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HSR65910.1"
                     /translation="RAALGAGEAGSTLAEEVELAERYLAIEALRLGARLQVAWDRREP
                     LPWRQPLPRLVLQPLVENAVLHGISRLPQGGTVAIVLRAEAGRLHLAVGNPAPPAAEP
                     ALHVGAGHAQRSIGLRLAHAFGPRARMTSGGDAGYYRCELEVPIADPGWAGEQAR"
BASE COUNT          322 a          865 c          866 g          355 t
ORIGIN      
        1 ggcagctgcc gtggagggcg cggttcatcg cccgctcggc ctcggcgcag gtgtgggtgt
       61 cggtgtggtc gagcgccgcg cacagcgcct gcgtggcggc gtcgccgtcg cggcattcga
      121 tcgcgatcgc gccctgcgcc ggcgccggca gccagtcggg cgacacgagc cgcgcgcgga
      181 tgcgcgcatc gaagccgagc cgctgcaggc ccgcgcaggc gagcacgatc gcgtcgtaat
      241 cgccggcgtc gagcttggcc aggcgggtgt tgacgttgcc gcgcaggtcg accagccgca
      301 ggtcgggccg ccgcgcgcgc agctgcgcct gccggcgcag ggaggacgtt cccacgcgcg
      361 cgccccgcgg caacgcgtcg agcgcatcga agcggttgct gacgaaggca tcggccggat
      421 cggcgcgctg caggatcgcc ggcagcgcga acccgggctc cagctccatc ggaacgtcct
      481 tgagcgagtg caccgcgcag tcggcctcgc cgcgctgcat cgccagctcg agctccttga
      541 ggaacagccc cttgccgccg atcgcggcga gcgagcggtc gagcacctcg tcgccgcgcg
      601 tgctcagcgg caccagctcc acctgcaggc cgggatgggc ggcgcgcagg cgttcggcga
      661 catgctcggt ctgccacagg gcgagcgggc ttttgcgggt ggcgatgcgg aggatggcca
      721 tgcgcccatt atcgggcgtc gccggtcacc gcgcacggct cgtgcaatcg caaggcccgg
      781 cctatggctc cctgttccat ttccgccgaa agtcgtcctt gagtttttcg caggccccat
      841 aagccaatcc gagcgcaccc cgggtcatcc tcggatcatc ctcgaggcgc gcgtattcgc
      901 tctcgcaata ttcgatggcg cttcggtcgt cattgcgctg gcccgatgtt ggatcggcca
      961 tttcaagcac gagtcccagc ccgatgaagg tcacgaacaa cacgacgatt cccagcagca
     1021 gcttcaggat gagcggggtc ggtttcctgt gggccggatt ccgcgcgccg caatgcacgc
     1081 acgctgcggc ttgatcactg tattcccgct tgcattccgg gcagtcgagc aacgccaacg
     1141 gggtcttcct aaaggtgctt gatggtttcg cgcaggtgcg ccacgcagcg acggctgact
     1201 tccagcggct gcttgccgtg gcgaagcacc gcctgcacgt ggccgtcggc ggcgcgcttg
     1261 agttcgacga tctcgtgccg tgccaccagg cagttgcggt ggatgcgcac gaagcgctcg
     1321 ccgaactcct cctccagcga cttcagcgat tcctcgatca ggtcctcgcc gcgcgcgtgg
     1381 tggacgacga cgtacttctc ctcggcctgc aggtagtgca cgtcctcgat cgggatcagg
     1441 cgcaggctgc cgcgcatgcg cgcgcacagg tgggtgcggc gctggccgga gggcgcggtg
     1501 gccgcctgcc cgcggccggc agcgaaggtg cgcacgcgtt cgagcgcggc ggccaggcgc
     1561 tcggggcgca ccggcttgac caggtagtcg atcgcctgcg catcgaaggc ggacagcgcg
     1621 tgtgcgtcga aggcggtgca gaacaccacc gccgggcgcg gctcgaacgc ggcgagatgg
     1681 cgggcggtct cgagcccgtc gatgccgggc atctggatgt cgagcaggac caggtcgggc
     1741 tgctgttcgg cgcaggcgtg cagggcggcg tggccgtcgc cggcctcggc gaccacggcc
     1801 acgcccggct gctcggcgag cagctcgcgc aaccgcgccc gcgccagcgg ttcgtcgtcg
     1861 acgatgacga ctctcatgct gcgaccttca ttgctgccgt cgttcatgcc ggcgccccgt
     1921 tcgcaacggc gctcatcgcg cctgctcccc cgcccaaccc ggatcggcga tgggcacctc
     1981 gagctcgcag cgatagtagc ccgcgtcccc gcccgacgtc atgcgcgcgc gcgggccgaa
     2041 ggcgtgggcc aggcgcaggc cgatgctgcg ctgggcatgg cccgcgccga cgtgcagcgc
     2101 cggctccgcc gcgggcggcg ccgggttgcc caccgcgagg tgcaggcgcc cggcttcggc
     2161 gcgcagcacg atcgccaccg tcccgccctg tggcaggcgc gagatgccgt gcagcaccgc
     2221 gttctcgacc agcggctgca gcacgagccg cggcagcggc tgccgccacg gcaagggctc
     2281 gcgacggtcc caggcgacct gcaggcgcgc ccccaggcgc agcgcctcga tcgcgaggta
     2341 gcgctcggcc agttccacct cctcggccag cgtcgagccg gcctcgcctg cgccgagcgc
     2401 ggcgcgga
//
LOCUS       DATIQC010000461         1673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_347449, whole genome shotgun sequence.
ACCESSION   DATIQC010000461 DATIQC010000000
VERSION     DATIQC010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347449"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VLM17_09975"
     CDS             <1..298
                     /locus_tag="VLM17_09975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HSR65911.1"
                     /translation="KRDPRGPAGARQGLNDYTGWFAGDAGMQGDYLGYDGPYPPANDL
                     RLHRYFFRLFALDVERLALPERFTAADVLRAMHGHVLGEAALYGTYSLNPAVRD"
     gene            complement(328..1134)
                     /locus_tag="VLM17_09980"
     CDS             complement(328..1134)
                     /locus_tag="VLM17_09980"
                     /inference="COORDINATES: protein motif:HMM:NF019359.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSR65912.1"
                     /translation="MSIPDDRYLRIGTIARRTGVSAKALRLYERRGLLAPCAHTPSGY
                     RLYGPAALQRLARIVLLKRLGFTLAQVGRLLAHDEQAATSLLAARIGVLERELRERTQ
                     TLHALRVVLARVDPASPPTTDQLLETLGMSNTIEEPTGEDEREALRRRAGTMGAYFTE
                     DEHAGFRQRAAALGEAGMARAQQDWAVLIGEVRAAMAAGMAADSGEGQALGRRWHALV
                     SAFTGGDPAIARKLGEAYAAQPQVAAGQGMDPAMFGWAREAMAAAGLTLA"
     gene            complement(1188..>1673)
                     /locus_tag="VLM17_09985"
     CDS             complement(1188..>1673)
                     /locus_tag="VLM17_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HSR65913.1"
                     /translation="PVAWALVIGGAWMLLAEWGAARRAQALGERANITWTVALLVGIA
                     QVVAGVFPGTSRSAATIFVALLAGTTARTAATEFAFLVGIPTMFAATAYELLSLYRDG
                     GLAGEDWGALAFAFVAATITAFVAVKWLLRYIQTHRFTVFALYRIAVGVALLLLVPAG
                     S"
BASE COUNT          220 a          644 c          596 g          213 t
ORIGIN      
        1 caagcgcgat ccgcgcgggc cggccggcgc gcgccagggg ttgaacgact acaccggctg
       61 gttcgccggc gacgccggca tgcagggcga ttacctcggc tacgacggcc cgtacccgcc
      121 ggccaacgat ctgcgcctgc accgctattt cttccgcctg ttcgcgctcg acgtcgagcg
      181 gctcgcgctg ccggagcgct tcaccgcggc cgacgtgttg cgcgccatgc acggccacgt
      241 gctgggcgag gcggcgctgt acggcaccta ttcgctcaac cccgcggtgc gcgactgacg
      301 gcggcaccca gggcgccgcc gccgcgctca cgccagcgtc aagcctgccg ccgccatcgc
      361 ctcgcgcgcc cagccgaaca tcgccgggtc catgccctgg ccggccgcga cctgcggctg
      421 cgcggcgtag gcctcgccga gcttgcgcgc gatcgccgga tcgccgccgg tgaaggcgct
      481 caccagcgcg tgccagcgcc ggccgagcgc ctgtccctcg ccggaatcgg ccgccattcc
      541 cgccgccatc gccgcgcgca cctcgccgat cagcacggcc cagtcctgct gcgcgcgcgc
      601 catgcccgct tcgcccagcg ctgcggcgcg ctggcggaag cccgcgtgtt cgtcctcggt
      661 gaagtaggcg cccatcgttc cggcgcggcg gcgcagcgcc tcgcgttcgt cctcgccggt
      721 cggttcttcg atcgtgttgc tcatgcccag ggtctccagc agctggtcgg tggtcggggg
      781 cgatgccgga tccacccgtg ccagcaccac ccgcagcgcg tgcagcgtct gcgtgcgctc
      841 gcgcagctcg cgctcgagca cgccgatgcg cgcggccagc aggctggtcg ccgcctgctc
      901 gtcgtgggcc agcagccgcc cgacctgcgc gagggtgaag cccaggcgct tgagcaggac
      961 gatgcgcgcc agccgctgca gcgccgccgg cccatacagc cggtaaccgg acggcgtgtg
     1021 cgcgcatggc gccagcaggc cgcgccgctc gtacagccgc agcgccttcg cgctgacgcc
     1081 ggtgcggcgg gcgatcgtgc cgatgcgcag gtaccggtcg tcgggaatcg acatcggcgg
     1141 cgacgttgcg gcctgtccct ggggcaaggt caagcgtccg ctgcggctca gctgccggcc
     1201 gggaccagca gcagcagcgc gacgccgacg gcgatgcggt agagcgcgaa cacggtgaag
     1261 cggtgcgtct ggatgtagcg cagcagccac ttcacggcga cgaacgcggt gatcgtggcg
     1321 gcgacgaagg cgaacgcgag cgcgccccag tcctcgccgg cgagcccgcc gtcccggtac
     1381 agcgacagca gttcgtaggc ggtcgccgcg aacatggtgg gaatgccgac caggaacgcg
     1441 aattcggtcg cggcggtgcg cgcggtggtg ccggcgagca gggcgacgaa gatcgtcgcc
     1501 gcgctgcgcg aggtgccggg aaacaccccg gcgacgacct gcgcgatgcc gaccagcagc
     1561 gccaccgtcc aggtgatgtt cgcgcgctca cccagcgcct gcgcccgccg cgccgcgccc
     1621 cattcggcca gcagcatcca ggcgccgccg atcaccagcg cccacgccac cgg
//
LOCUS       DATIQC010000462         3187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_595307, whole genome shotgun sequence.
ACCESSION   DATIQC010000462 DATIQC010000000
VERSION     DATIQC010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595307"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VLM17_09990"
     CDS             complement(<1..218)
                     /locus_tag="VLM17_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015472403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR65914.1"
                     /translation="MVTLGTPLSPHATRVLLLGSGELGKEVAIELQRFGVEVIAADRY
                     ADAPAMQVAHRSHVLDMLDGDAVRALIEA"
     gene            299..1198
                     /locus_tag="VLM17_09995"
     CDS             299..1198
                     /locus_tag="VLM17_09995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65915.1"
                     /translation="MPGGRRPRLSILLAVLLAGCGVRPLPFAQLSGLLVDPQLDEVSG
                     LAASRAHPDTLWVLDDGGNAPVLYAIGKRGGLVARLRIAGVTNTDWEDLAAFDLDGRH
                     YLLVADTGDNGGLRHSAQLHVVEEPAALADGTLSPAWSIAFRWPDGPRDCEAVAVDAA
                     RGEVLLVSKKRRPPELFVLPLRPAQAGVQVARRIGALVGVPAPDAGELRDNPRAARIL
                     HQVTAADLAPDGRRLAVLTYSELLLYTRRGDEGWARATARAPVVHALPWLPQAEALGW
                     APGGQALYATGEGLPEPLFYLNP"
     gene            1373..2236
                     /locus_tag="VLM17_10000"
     CDS             1373..2236
                     /locus_tag="VLM17_10000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014507017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HSR65916.1"
                     /translation="MKENPLHSLPGIPVLLAVIAGALGGAYAVVLGAQAANGTFVVAG
                     ALLVALAVFFVVGLYTVEPNQAAVLSLFGKYVGTVKESGLRWNGPFYGKKKVSLRVRN
                     FESGKLKVNELDGSPIEIAAVIVWQVVDSAEAVYNVDDYESFVHIQSESALRAMATSY
                     PYDQHEPGQLALRSHAAEISQHLKQELQERLADAGVAVTDARISHLAYAPEIAQAMLQ
                     RQQANAIIAARTRIVAGAVGMVEMALAELQKNDVVQLDEERKAQMVSNLLVVLCGERG
                     TQPIVNAGTIY"
     gene            2320..2508
                     /locus_tag="VLM17_10005"
     CDS             2320..2508
                     /locus_tag="VLM17_10005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arc family DNA binding domain-containing
                     protein"
                     /protein_id="HSR65917.1"
                     /translation="MTEKKAYPLRINADVLAAAQRWADDELRSLNAQIEYVLRDALRK
                     AGRLKPPATAPDGDDDDA"
     gene            2555..3142
                     /locus_tag="VLM17_10010"
     CDS             2555..3142
                     /locus_tag="VLM17_10010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65918.1"
                     /translation="MDAPTIIELQPPSARARTWTFLLTVGLPMAAVAGSLAMHGPSRW
                     RLWPSAGSPLADGAIVLATALLVLLLVWAAMVRAMRRHRLEVRDGALAVVAGFHRDRL
                     ALPELQLDQARIGTLGEHPEWKPFLKVNGTALPGFRGGWFRTRSWQRVFACMADGERV
                     LWIPTTRKHALLLDARRPRELLEQLRAMAAPPPRR"
BASE COUNT          456 a         1165 c         1131 g          435 t
ORIGIN      
        1 gcctcgatca gcgcgcggac cgcgtcgccg tcgagcatgt cgagcacgtg gctgcgatgc
       61 gcgacctgca tcgccggggc gtccgcgtag cggtccgccg cgatcacctc gacgccgaag
      121 cgctgcagct cgatcgccac ctccttgccg agctcgccgg agccgagcag cagcacgcgc
      181 gtcgcatgcg gggacagggg cgtgccgagg gtgaccatgg gcgggtccgg gggaacgggc
      241 cgccagtcta gcgggcgaga cggtgatggc gtccggcgcg cgtgcgatcc ttgtccgcat
      301 gcccgggggc cgccgtccac gcctgtcgat cctgcttgcc gtactgctcg ccggttgcgg
      361 cgtgcggccg ctgccgttcg cgcagttgtc ggggctgctg gtcgacccgc aactcgacga
      421 ggtcagcggc ctggcggcat cgcgcgccca ccccgacacg ctgtgggtgc tcgacgacgg
      481 cggcaacgcg ccggtgcttt acgcgatcgg caagcgcggc ggcctcgtgg cgcgcctgcg
      541 catcgccggc gtcaccaaca ccgactggga agacctcgcc gccttcgacc tcgacggacg
      601 ccactacctg ctcgtcgccg acaccggcga caacggtggc ctccgccaca gcgcgcagct
      661 gcacgtggtc gaggaaccgg cggcgctcgc cgatggcacg ctctcgccgg cgtggtcgat
      721 cgcgttccgc tggcccgacg gcccgcgcga ctgcgaggcc gtcgcggtgg acgccgcgcg
      781 cggcgaggtg ctgctggtgt cgaagaagcg ccggccgccc gaactgttcg tgctgccgtt
      841 gcggccggcg caggccggcg tgcaggtggc gcggcggatc ggcgccctcg tcggcgtgcc
      901 ggcgccggac gccggcgaac tgcgcgacaa cccgcgcgcg gcgcgcatcc tgcaccaggt
      961 gaccgccgcc gacctcgcac ccgacggccg acggctcgcg gtgctgacct acagcgagct
     1021 cctgctctac acccgccgcg gcgacgaagg ctgggcgcgg gccaccgcgc gagcgccggt
     1081 cgtgcatgcg ctgccctggc tgccacaggc cgaggcgctg ggctgggcgc cgggcggcca
     1141 ggcgctgtac gcgaccggcg aagggctgcc ggaaccgctc ttctacctca acccctagaa
     1201 gcgcccgcga tgccgatcca cgccggcggg ccctcgccgc gagggccctg cctgctctac
     1261 ccccgacggc tgctcgccat ggccgcgccg accgacggcg gcatgagcca cttgcagtct
     1321 gatatcagtt tgatatcttg acctgcaccc caaccggcca gcgagagccg ccatgaaaga
     1381 gaacccgctg cactcccttc ccggcatccc ggtgctgctg gcggtgatcg ccggcgcgct
     1441 cggcggcgcc tacgccgtcg tgctcggcgc gcaggccgcg aacggcacgt tcgtggtcgc
     1501 cggcgccctg ctcgtcgcgc tcgccgtgtt cttcgtggtc ggcctgtaca cggtcgaacc
     1561 caaccaggcc gcggtgctga gcctgttcgg caagtacgtc ggcacggtca aggaaagcgg
     1621 cctgcgctgg aacggcccct tctacggcaa gaagaaggtg tccctgcgcg tgcgcaactt
     1681 cgagagcggc aagctcaagg tcaacgagct cgacggcagc ccgatcgaga tcgccgcggt
     1741 catcgtgtgg caggtcgtcg acagcgcgga ggcggtctac aacgtcgacg actacgagag
     1801 cttcgtgcac atccagtccg agtcggcgct gcgtgcgatg gcgaccagct acccttacga
     1861 ccagcacgaa cccggccagc tcgccctgcg cagccacgcg gcggaaattt cgcagcacct
     1921 gaagcaggaa ttgcaggaac gcctcgcgga cgccggtgtc gcggtcaccg acgcccgcat
     1981 cagccacctc gcctatgcgc cggagatcgc ccaggcgatg ctgcagcgcc agcaggccaa
     2041 cgcgatcatc gccgcgcgca cgcggatcgt cgccggcgcc gtcggcatgg tcgagatggc
     2101 gctcgccgag ctgcagaaga acgacgtggt gcagctcgac gaggagcgca aggcgcagat
     2161 ggtcagcaac ctgctggtgg tgctgtgcgg cgagcgagga acgcagccca tcgtgaacgc
     2221 cggaacgatc tactgaggcc gcgcggatga acgtcgccgt gatggtcgcc atcctcgtgg
     2281 tcctggtcgc cgtcccgcga cgccgcaagg actgaccgga tgacggagaa aaaggcctat
     2341 ccgctgcgca tcaacgccga cgtgctggcg gcggcgcagc gctgggccga cgacgagctc
     2401 cgcagcctca acgcgcagat cgagtacgtg ctgcgcgacg cgctgcggaa ggcggggcgg
     2461 ttgaagccgc ccgcgaccgc accggacggg gacgacgatg acgcgtgacc gcgccggcat
     2521 ggcccgccgg attcacccgc actactgagg cgacatggac gccccgacca tcatcgaact
     2581 gcagccgccg tccgcgcgcg cacggacctg gacgttcctg ctcaccgtcg gcctgccgat
     2641 ggcggccgtg gccgggagcc tcgccatgca cggaccttcg cgctggcgat tgtggccgag
     2701 cgcgggctcg ccgctggccg atggcgcgat cgtgctcgcg acggccctgc tggtgctgct
     2761 gctcgtgtgg gcggcgatgg tccgcgcgat gcgccgccac cgcctcgaag tgcgggacgg
     2821 cgcactggcc gtggtcgccg ggttccatcg agaccgcctc gccctgcccg agctgcagct
     2881 ggaccaggcg cgcatcggca cgcttggcga gcacccggag tggaagccct tcctcaaggt
     2941 caacggcacg gcgctgcccg gtttccgggg cggctggttc cgcacgcgat cctggcagcg
     3001 cgtgttcgcc tgcatggcgg acggcgagcg cgtgctgtgg atcccgacca cgcgcaagca
     3061 cgcgctgctg ctcgatgcgc gccggccgcg cgaactgctc gagcagttgc gcgcgatggc
     3121 ggcgccaccg ccgcgccggt aacctgcacg catgcgcgcc gccaccgacg tcctgctcaa
     3181 cacggcc
//
LOCUS       DATIQC010000463         3603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_453594, whole genome shotgun sequence.
ACCESSION   DATIQC010000463 DATIQC010000000
VERSION     DATIQC010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453594"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VLM17_10015"
     CDS             <1..507
                     /locus_tag="VLM17_10015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007513903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR65919.1"
                     /translation="AAFAHAREGHAMAYHWLERALDTAARHGCAGLDSAAVERWLAAA
                     ASNPRFANDPHRRQDLLSLRGQLRLAHGDGAGALADFDRALAQDPTPVVAAMQTALLA
                     SAGHYREALAHLDGFRRLPPRAPSGWGMPRLHAWVLERQGYWPHELGELRRKLLAELA
                     APSTPTTP"
     gene            515..2482
                     /locus_tag="VLM17_10020"
     CDS             515..2482
                     /locus_tag="VLM17_10020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65920.1"
                     /translation="MTDFPRAHAATPTGRDALAVLAVVALVALVYWPGLHGGFVFDDY
                     QNIADNPGFRSGFTHWREWLAVALSSSSSSLQRPLSMLTFIANVRFAGLDPVAMKLTN
                     IAIHAGNVVLVFVLARALLDASAGGRRHADGPRAWAPLFVAAAWGLHPINLMAVLYVV
                     QRMESLSHAFVFLGLWLYVRGRRGQLAGERGWLRIGAGLLGCTVLGLLCKESAVLLPL
                     YALGIELCVFRFRRDGGRVERRLVVLYLLVLALPALAAVAWLLPQALRPDAYASRDFT
                     LGERLLTEPRVVLGYLHWILAPGLRSLGLYHDDIVISRGLLDPPATLVALVALALLAM
                     GGWWLRRRRPLAALGIFWFLAAQVLTATFIPLELVFEHRNYFASLGVCLVLADLLLLA
                     PPPAWRRIGALLAVAFVLYGAGITWLRAREWSDPLRFAASEAAKHPLSPRATYEYARA
                     LIIVSNYDPRSPAYAEVPAAIARAQGAPGAGPLPDQAALMFAARTGTPPPAGTWEDLQ
                     RKLRLRRGSPESQLSMMALVDCNIAGHCDLPPDRMLATFGATLEDDHPDPEMLALYGK
                     YALRVLGDGNLALRAWGEAVARAPTVARFRVNLAALLIDLGEHGEARAQIAALRGLGR
                     MGQHAEAADALQRRLDASTAAVPRPAATLPP"
     gene            2479..3591
                     /gene="gmd"
                     /locus_tag="VLM17_10025"
     CDS             2479..3591
                     /gene="gmd"
                     /locus_tag="VLM17_10025"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008446 - GDP-mannose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HSR65921.1"
                     /translation="MTKRALITGITGQDGAYLAEFLLGKGYEVHGIKRRASSFNTERI
                     DHLYQDPHERDRRRVLHYGDLSDATNLIRVIQQTRPDELYNLGAQSHVQVSFETPEYT
                     ANADGIGTPRLLEAIRILGLEAKTRFYQASTSELYGKVAETPQTESTPFYPRSPYGVA
                     KLYAYWITVNYREAYGLYACNGILFNHESPIRGETFVTRKITRALARIHLGLQDCLYL
                     GNLDARRDWGHARDYVEMQWLMLQQPAPEDYVIATGVQHSVREFVEYAAAELGIAIEW
                     RGSGADAHGVVARAPADSRATPGQRIVAIDPRYYRPAEVETLLGDATKARDKLGWQPR
                     IGFEALVREMMQSDLSLARRDALIVDAGYRANSPQD"
BASE COUNT          464 a         1377 c         1241 g          521 t
ORIGIN      
        1 gcggccttcg cccatgcccg cgaaggccat gcgatggcct accactggct ggaacgcgcg
       61 ctcgatacgg ccgcccgaca cggctgcgcc ggactcgatt ccgccgcggt ggaacgctgg
      121 ctggccgccg ccgcgagcaa cccgcgcttc gccaacgatc cgcaccggcg ccaggacctg
      181 ctgtcgctgc ggggccagct gcggctggcc catggcgacg gtgccggcgc gctggccgat
      241 ttcgaccgcg cgctggcgca ggacccgacc cccgtggtgg ccgccatgca gaccgcgctg
      301 ctcgccagcg ccggccacta tcgcgaagcg ctcgcgcacc tggacggttt ccggcgcctg
      361 ccgccgcgcg cgccgtccgg ctggggcatg ccgcgcttgc atgcgtgggt gctcgaacgg
      421 cagggttact ggccgcacga actgggcgag ctgcggcgca agctgctggc cgaactcgcc
      481 gcgccttcca cgcccaccac cccatgaggc cccgatgacc gacttcccac gcgcgcacgc
      541 cgcgaccccg acggggcgcg acgcgctcgc cgtgctggcc gtcgtcgcgc tggtcgcgct
      601 ggtgtactgg cccggcctgc acggcggctt cgtgttcgac gactaccaga acatcgccga
      661 caacccgggg ttccggtccg gcttcacgca ctggcgcgaa tggctggcgg tcgcgctctc
      721 gtcgtcctcg agctcgctgc agcgcccgct gtcgatgctg accttcatcg cgaacgtgcg
      781 cttcgccggg ctggacccgg tggcgatgaa gctcaccaac atcgcgatcc acgccggcaa
      841 cgtggtgctg gtgttcgtgc tcgcgcgggc gttgctggac gcgtccgccg gcggccgccg
      901 gcacgctgac ggcccgcgcg cgtgggcgcc gctgttcgtc gccgcggcct ggggcctgca
      961 tccgatcaac ctgatggcgg tgctgtacgt ggtgcagcgc atggagagcc tgagccacgc
     1021 cttcgtcttc ctcggcctgt ggctgtacgt gcggggacgg cgcgggcagc tggcgggcga
     1081 acgcggctgg ctgcggattg gcgcgggcct gctcggctgc accgtgctcg gcctgctgtg
     1141 caaggaatcg gcggtgctcc tgccgttgta tgcgctgggc atcgagctgt gcgtgttccg
     1201 tttccggcgc gacggcggac gcgtcgagcg ccgcctcgtg gtgctctacc tgctcgtgct
     1261 ggcgctgccg gcgctggccg ccgtcgcctg gctgctgccg caggcgctgc gcccggacgc
     1321 ctatgcgtcg cgcgacttca ccctcggcga acgcctgctc accgagccgc gcgtcgtgct
     1381 cggctacctg cactggatcc tcgcgccggg gctgcgcagc ctgggcctgt accacgacga
     1441 catcgtcatc tcgcgcggcc tgctcgatcc accggcgacg ctggtggcgc tggtcgcgct
     1501 ggcgctgctc gccatgggcg ggtggtggct gcgccggcgc cgtccactgg cggccctcgg
     1561 catcttctgg ttcctcgccg cgcaggtgct gaccgcgacc ttcatcccgc tcgaactcgt
     1621 gttcgagcac cgcaactact tcgcctcgct gggcgtctgc ctcgtcctcg ccgacctgct
     1681 gctgctcgcg ccgccgccgg cctggcgccg gatcggcgcg ctgctggccg tggccttcgt
     1741 gctgtacggc gccggcatca cctggctgcg cgcgcgcgag tggagcgacc cgctgcgctt
     1801 cgcggcgtcg gaggcggcca agcacccgct ctcgccgcgg gcgacctacg aatacgcgcg
     1861 cgcgctgatc atcgtcagca actacgaccc ccgctcgccc gcgtacgccg aagtgccggc
     1921 ggcgatcgcg cgcgcgcagg gcgcgccggg cgcaggcccc ctgcccgacc aggccgcgct
     1981 gatgttcgcc gcgcgcaccg gcacgccgcc gccggcgggg acgtgggaag acctgcagcg
     2041 gaaactgcgc ctcaggcgtg gttcgccgga atcgcagctc tcgatgatgg cgctggtcga
     2101 ctgcaacatc gccgggcact gcgacctgcc gcccgaccgg atgctggcca ccttcggcgc
     2161 cacgctggag gacgaccatc ccgacccgga gatgctcgcg ctgtacggga agtacgcgct
     2221 gcgcgtgctc ggcgacggca acctggcgct gcgggcctgg ggcgaagccg tcgcccgggc
     2281 ccccaccgtc gcccgcttcc gggtcaacct ggccgccctg ctgatcgacc tcggcgagca
     2341 cggcgaagcg cgcgcgcaga tcgcggcgct gcgcggcctc ggccgcatgg gccagcacgc
     2401 cgaggccgcc gatgcgctgc agcgccggct cgacgccagc accgccgcag tgccccgccc
     2461 cgcggctaca ctcccgccat gaccaagcgc gcattgatca ccggcatcac cggccaggat
     2521 ggcgcctacc tggccgaatt cctgctcggc aagggctacg aggtgcacgg catcaagcgc
     2581 cgcgcctcct cgttcaacac cgagcgcatc gaccacctgt accaggaccc gcacgagcgc
     2641 gaccgccggc gggtgctgca ctacggcgac ctgtcggacg cgaccaacct gatccgggtc
     2701 atccagcaga cgcggcccga cgagctctac aacctgggcg cgcagagcca cgtgcaggtc
     2761 tcgttcgaga cgcccgagta caccgcgaac gccgacggca tcggcacgcc gcggctgctg
     2821 gaagccatcc gcatcctcgg cctcgaggcg aagacgcgct tctaccaggc ctcgacctcc
     2881 gagctctacg gcaaggtcgc ggagacgccg cagaccgagt cgacgccgtt ctacccgcgc
     2941 tcgccctacg gcgtggccaa gctctacgcg tactggatca cggtcaacta ccgcgaggcc
     3001 tacggcctgt acgcctgcaa cggcatcctg ttcaaccacg agtcgccgat ccgcggcgag
     3061 accttcgtca cccgcaagat cacccgcgcg ctcgcccgca tccacctcgg actgcaggat
     3121 tgcctgtacc tcggcaacct cgacgcgcgc cgggactggg gccacgcgcg cgactacgtc
     3181 gagatgcagt ggctgatgct gcagcagccg gcgccggagg actacgtgat cgccaccggc
     3241 gtgcagcatt cggtgcgcga gttcgtcgaa tacgccgccg cggaactcgg catcgccatc
     3301 gagtggcgcg gcagcggcgc cgacgcgcac ggtgtggtcg cgcgcgcgcc ggcggactcg
     3361 cgcgcgacgc ccggccagcg catcgtcgcc atcgacccgc gctactaccg ccccgcggaa
     3421 gtcgagaccc tgctgggcga cgcgaccaag gcgcgcgaca agctcggctg gcagccgcgc
     3481 atcggcttcg aggcgctggt gcgcgagatg atgcagtccg acctgtcgct ggcccggcgc
     3541 gacgcgctga tcgtcgacgc cggctaccgc gcgaactcgc cgcaggactg agcgcgcgga
     3601 tgg
//
LOCUS       DATIQC010000464         7199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_135653, whole genome shotgun sequence.
ACCESSION   DATIQC010000464 DATIQC010000000
VERSION     DATIQC010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7199
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135653"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /locus_tag="VLM17_10030"
     CDS             <1..850
                     /locus_tag="VLM17_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HSR65922.1"
                     /translation="VNYAFVDAALLARWQLADAAVPLANPLSAELAVMRTQLLPGLVA
                     ALARNVARQQVRVRLFELGNVFHARGAVGAPAETPRIAAVACGAAAGEQWGERARPVD
                     FHDLKGDLDSLAALSGAQLEYRRSQAPWGHPGRSADVFRDGERIGWLGQLHPRLQQAL
                     GLDVELVAFELDLEPLLARPLPKARPLSRFPSVRRDLAFVVAEQVPWSTLEATVKAAA
                     GAFLQELVLFDRYVGKGVETGCKSLAMGLILQDESRTLTDRDVDAVVAEVMAALQREH
                     GAVIRG"
     gene            872..1189
                     /locus_tag="VLM17_10035"
     CDS             872..1189
                     /locus_tag="VLM17_10035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HSR65923.1"
                     /translation="MALTKAEMAERLFDEVGLNKREAKEFVDAFFDALREALEAGRQV
                     KLSGFGNFDLRRKNQRPGRNPKTGEEIPISARTVVTFRPGQKLKERVEAYAGSGSLEA
                     GHA"
     gene            1182..1538
                     /locus_tag="VLM17_10040"
     CDS             1182..1538
                     /locus_tag="VLM17_10040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019182707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HSR65924.1"
                     /translation="MLDPGSNKELPPIPAKRYFTIGEVSELCDVKPHVLRYWETEFPS
                     LKPVKRRGNRRYYQRHDVMMVRQIRGLLYEQGYTIGGARLRLEGEGAKQEATLSTQIV
                     RQVRMELEEVLQLLRR"
     gene            1583..1659
                     /locus_tag="VLM17_10045"
     tRNA            1583..1659
                     /locus_tag="VLM17_10045"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1617..1619,aa:Pro,seq:ggg)
     gene            1791..2027
                     /locus_tag="VLM17_10050"
     CDS             1791..2027
                     /locus_tag="VLM17_10050"
                     /inference="COORDINATES: protein motif:HMM:NF021471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HSR65925.1"
                     /translation="MRPVMYFVSRVGDHWEIRCRSDPRAGDFADRAEAIAAARQAAGA
                     LWKAQQVASEVFVDDEDGRWHKVATYGDLLGPLG"
     gene            complement(2049..3971)
                     /gene="dxs"
                     /locus_tag="VLM17_10055"
     CDS             complement(2049..3971)
                     /gene="dxs"
                     /locus_tag="VLM17_10055"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HSR65926.1"
                     /translation="MIDPTRYPRLSRIRTPAELRQFDEGELPAIADELRAYLIESVGR
                     SGGHFGAGLGVIELTVALHWLYATPDDRIVWDVGHQTYPHKILTGRGEAIHTVKQKDG
                     IAPFPKREESEYDTFGVGHSSTSISAALGMAIANQRAGSDSKAASRQVVAVIGDGAMT
                     AGMAYEALNHAGGMEPEPNLLVILNDNRMSISENVGGLTKMLGRMTGSRTLNAIREGG
                     KKLLGDKNNPTAKFVRRWEEHWKGMFVPSTLFEEMGFHYTGPIDGHDVDALVKTLRTL
                     KGLKGPQLLHVITTKGKGYELAEGDQIGYHAVSPFDPDKGVVAKTGAKKPTYTDVFGD
                     WLCDMAAADPKLLAITPAMREGSGLVRFSREFPERYFDVAIAEQHAVTLAAGMACEGA
                     KPVVAIYSTFLQRGYDQLVHDVAIQDLDVLFAVDRGGVVGPDGATHAGNLDLSFLRCV
                     PNMVVMAPADENECRQLLTTGYRFEGPAAVRYPRGTGPGVAVEPTLETLPIGKAEVRR
                     RGARIALLAFGAVVPAAEQVGAELGLTVVNMRFVKPLDRALLLELAQTHEGFATLEDN
                     VVAGGAGSGVAELLAGENLAMPILHLGLPDAFQHHASREQLLAEAGLDAAGIRAALLA
                     RWPSLGRPQAMHSAAG"
     gene            complement(4097..5176)
                     /locus_tag="VLM17_10060"
     CDS             complement(4097..5176)
                     /locus_tag="VLM17_10060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65927.1"
                     /translation="MAQTLGMTGMDPATESALKAAFEQANAQLGRAWRLVPDQNADYV
                     VVDMDSMYGPMSWLRLHAAGKLVIGLTSAARTQTDFHLAQPFDAASVAALLRDIAGGG
                     SPVAAPEAAAPAKVAAIPSGMSPSPMPQDQLPEELPPVRDEEERAPLGPKPADSVEVG
                     TLAPTTIEPAPMPEPPARERGFFDWLAPGALSGRVRYRDLLIDADQRQYHGPVALKPL
                     AGHFDGVVERSAFAPVDDASWARESAALGPAQPLNRLQWFGGLVAGRGALLPGHDADG
                     RFRLGKWPQTEREFPKHFRIATQMMKGPATVEEIAAGSGMPREDVVDFVNASIAGGYA
                     EQVREQAPEPTEPAKGGLFGRLRGK"
     gene            complement(5253..5870)
                     /locus_tag="VLM17_10065"
     CDS             complement(5253..5870)
                     /locus_tag="VLM17_10065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HSR65928.1"
                     /translation="MPARLDAVRLLSLDAHGRVLDWMSWQDATCLYARGAVAWTLGDP
                     CLRVHGGTSRASGAQSVVELHPIVAARGHPRPHALDPTPALTNAALFARDQHLCLYCG
                     RESTRHHLTRDHVMPLSKGGRDVWENVVAACFHCNSRKGGRTPQQAGMPLLAVPYRPR
                     WIEHLILANRNILADQMAFLKAQLPKRAPRFDAGLHAAQRDGAIA"
     gene            complement(5997..>7199)
                     /gene="phaZ"
                     /locus_tag="VLM17_10070"
     CDS             complement(5997..>7199)
                     /gene="phaZ"
                     /locus_tag="VLM17_10070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HSR65929.1"
                     /translation="TWLAAWPEAPRIAAGYELIHRLGKEYEKPAFGITVVDAHGHACP
                     VLEQEVMATPFCRLLRFRRTADDAAVLDRLNRDPAVLVVAPLSGHHATLLRDTVRTLL
                     RDHDVYVTDWVDARLVPARLGTFSLDDYVATIEGFIATLGASRLHVVSVCQSTVPVLA
                     AVSLLAARGEATPRSLVMMGGPIDSRESPTAVNTLATRKPLAWFAANLIHPVPANHPG
                     RGRRVYPGFLQHAGFLAMNPERHLQSHWDFYCHLVRGDLDDAEAHRRFYDEYNAVLDM
                     PAEYYLDTVRIVFQQHLLARGGWDVAGERVDPAAIRDTAILTIEGELDDICGLGQTRA
                     AHGLCTGLGDDRRAHLTVEGAGHYGIFSGRRWREQVYPQVRGFIAAHGAREPAPARKR
                     DRRLHTAS"
BASE COUNT          975 a         2460 c         2698 g         1066 t
ORIGIN      
        1 ggtgaactac gccttcgtcg atgccgccct gcttgcccgg tggcagctgg ccgacgccgc
       61 ggtgccgctg gccaatccgc tcagcgcgga actggcggtg atgcgcaccc aactgctgcc
      121 ggggctggtg gcggcgctcg cgcgcaacgt ggcgcgccag caggtgcgcg tgcgcctgtt
      181 cgagctcggc aacgttttcc acgcccgcgg cgcggtcggc gccccggccg agacgccgcg
      241 cattgccgcc gtcgcctgcg gcgcggccgc cggcgagcag tggggcgagc gcgcgcgtcc
      301 ggtcgatttc cacgacctca agggcgacct cgacagcctc gccgccctgt cgggggcgca
      361 gctcgaatac cgccgctcgc aggccccgtg ggggcatccg gggcgctcgg cggacgtctt
      421 ccgcgacggc gagcggatcg gctggctcgg ccagttgcac ccgcgcctgc agcaggcgct
      481 ggggctggac gtcgagctgg tggcgttcga gctcgacctg gagccgctgc tcgcgcgacc
      541 gctgccgaag gcgcggccgc tctcgcgctt tccgtccgtc cgccgcgacc tcgcgttcgt
      601 cgtcgccgag caggtgccct ggagcacgct ggaggccacc gtcaaggcgg ccgcgggcgc
      661 gtttttgcag gagctggtgc tgttcgaccg ctatgtcggc aagggcgtgg aaacgggatg
      721 caagagtctg gctatgggct tgattctgca ggacgaatcg cgcacgctga ccgaccgcga
      781 cgtggacgcc gtggtggccg aggtgatggc cgccctgcag cgcgaacacg gcgcggtcat
      841 ccgtggttga tcgttcaggg ggacgatgag gatggccttg accaaggcgg aaatggccga
      901 gcgtctgttc gacgaggtcg gtctcaacaa gcgcgaggcg aaggaattcg tcgacgcgtt
      961 cttcgacgcg ctgcgcgaag cgctcgaggc cgggcgacag gtgaagctgt ccggcttcgg
     1021 caacttcgac ctgcgccgca agaaccagcg cccgggacgc aacccgaaga ccggcgagga
     1081 gattccgatc tccgcgcgca cggtggtgac gttccgtccg gggcagaaac tgaaggagcg
     1141 cgtggaggcc tacgccggct ccggcagcct ggaggccggc catgcttgat ccgggcagca
     1201 acaaggagct gccgccgatc ccggcgaagc gctacttcac catcggcgag gtcagcgagc
     1261 tgtgcgacgt caagccgcac gtgctccgct actgggagac cgaattcccg tcgctcaagc
     1321 cggtcaagcg ccgcggcaac cgccgctact accagcgcca cgacgtgatg atggtgcggc
     1381 agatccgcgg cctgctgtac gaacagggct acacgatcgg cggcgcgcgc ctgcgcctgg
     1441 agggcgaggg cgcgaagcag gaggccaccc tgtccaccca gatcgtgcgc caggtgcgca
     1501 tggagctgga ggaagtgctg cagctgctgc gtcgctgaac gcgcttttgg gacgacgctg
     1561 cggctataat ccgcgtccca ctcggggtat agcgcagcct ggtagcgcac ttgtctgggg
     1621 gacaagtggt cgtcggttca aatccggcta ccccgaccag ttccgacacc cgacggccag
     1681 gccccgcgcc cggccgttgt cgcatacggc cggcgcaagc cggcttgccg ctcccttccg
     1741 cgccgcgcgc ttcgacgggg cggccacccg cccgatgcta gggttttcgc atgcgtccgg
     1801 tgatgtactt cgtttcgcgc gtcggcgacc actgggagat ccgctgccgc agcgatcccc
     1861 gggccggcga cttcgccgac cgcgcggagg cgatcgcggc ggcgcggcag gcggccggcg
     1921 cgttgtggaa ggcccagcag gtggcgagcg aggtcttcgt cgacgacgag gacggccgct
     1981 ggcacaaggt cgccacctac ggcgacctgc tgggaccgct cggctgaggc gccgggcgcg
     2041 cgccggagtc agccggcggc gctgtgcatc gcctggggcc gacccaggct gggccagcgt
     2101 gccagcagcg cggcgcggat gccggcggca tcgagcccag cttcggccag gagctgctcg
     2161 cggctggcgt ggtgctggaa ggcgtccggc agcccgaggt gcaggatcgg catggcgagg
     2221 ttctcgccgg ccagcagttc ggccacgccg gagccggcgc cgccagcgac gacgttgtcc
     2281 tcgagggtgg cgaacccttc gtgggtctgc gccagttcca gcagcaacgc gcggtcgagc
     2341 ggcttgacga agcgcatgtt gacgacggtg aggcccagtt cggcgccgac ctgttcggcc
     2401 gccggcacga ccgcgccgaa ggccagcagg gcgatgcgcg cgccgcggcg gcggacttcc
     2461 gccttgccga tcggcaaggt ctccagcgtc ggctcgacgg ccacgcccgg gccggtgccg
     2521 cgcggatagc gcaccgcggc cgggccctcg aagcggtagc cggtggtcag cagctgccgg
     2581 cattcgttct cgtcggccgg cgccatcacc accatgttgg gcacgcagcg caggaagctg
     2641 aggtcgaggt tgccggcgtg cgtcgcgccg tccgggccga ccacgccgcc gcggtcgacc
     2701 gcgaacagga cgtcgaggtc ctggatcgcg acgtcgtgca ccagctggtc atagccgcgc
     2761 tgcaggaagg tcgaatagat cgcgacgacc ggcttggcgc cttcgcaggc catgcccgcg
     2821 gcgagcgtca ccgcgtgctg ctcggcgatc gcgacgtcga aatagcgctc cgggaattcc
     2881 cggctgaaac gcaccagccc cgagccttcg cgcatcgccg gcgtgatcgc cagcagcttc
     2941 gggtcggccg cggccatgtc gcacagccag tcgccgaaca cgtcggtgta ggtcggcttc
     3001 ttggcgcccg tcttggcgac gacgcccttg tcgggatcga acggcgacac cgcgtggtag
     3061 ccgatctggt cgccttcggc gagttcgtaa cccttgccct tggtggtgat gacgtgcagc
     3121 agctgcgggc ccttgaggcc cttgagcgtg cgcagcgtct tcaccagcgc gtcgacgtcg
     3181 tggccgtcga tcgggccggt gtagtggaag cccatctcct cgaacagcgt ggacggcacg
     3241 aacatgccct tccagtgttc ctcccagcgc cgcacgaact tcgccgtcgg gttgttcttg
     3301 tcgccgagca gcttcttgcc gccctcgcgg atcgcgttga gcgtgcggct gccggtcatg
     3361 cggccgagca tcttggtcag gccgccgacg ttctcggaga tcgacatccg gttgtcgttg
     3421 aggatgacga gcaggttcgg ctccggctcc atcccgccag cgtggttgag cgcctcgtag
     3481 gccatgccgg cggtcatcgc gccgtcgccg atcaccgcga cgacctgtct tgaagccgcc
     3541 ttgctgtcgc tgccggcgcg ctggttcgcg atcgccatgc cgagcgcggc ggagatcgac
     3601 gtcgacgaat ggccgactcc gaaggtgtcg tattcacttt cctcgcgctt ggggaagggc
     3661 gcgatgccat ccttctgctt gaccgtgtgg atcgcctcgc cgcgcccggt caggatcttg
     3721 tgcgggtacg tctggtggcc gacgtcccag acgatgcggt cgtcgggcgt ggcgtacagc
     3781 cagtgcaggg ccacggtcag ctcgatcacg ccgaggccgg cgccgaaatg gccaccactc
     3841 ctgccgaccg actcgatcag gtaggcacgc agctcgtccg cgatcgccgg cagctcgcct
     3901 tcgtcgaact ggcgcaactc ggcgggcgtg cggatgcggg agaggcgcgg gtagcgcgtg
     3961 gggtcgatca tgggggcctt tcgtcgcgcg gacccgccat tttcgcgccc gctgccgtga
     4021 ggggcaagaa aaccccgcat ggccgatcgg gtggcgcgcg atcagccgcg cgcgcggtgg
     4081 cctcgcgcgc gccgcgtcac ttgccgcgca ggcgcccgaa caggccgccc ttggccggct
     4141 cggtgggctc cggcgcctgc tcgcgcacct gctcggcgta gccgccggcg atgctggcgt
     4201 tgacgaaatc gaccacgtcc tcgcgcggca tgccgctgcc ggcggcgatc tcctccacgg
     4261 tcgccgggcc cttcatcatc tgggtggcga tgcggaagtg cttggggaac tcgcgctcgg
     4321 tctgcggcca cttgccgagc cggaagcggc cgtcggcgtc atggcccggc agcagtgcgc
     4381 cgcgtccggc caccaggccg ccgaaccact gcaggcggtt gagcggctgc gccgggccga
     4441 gcgcggcgct ttcgcgcgcc cagctcgcgt cgtcgaccgg cgcgaacgcg ctgcgctcga
     4501 ccacgccgtc gaagtggccg gcgagcggct tgagcgccac cggcccatgg tactggcgct
     4561 ggtcggcgtc gatcagcagg tcgcggtagc gcacgcgccc cgacagggca ccgggggcca
     4621 gccagtcgaa gaagccgcgc tcgcgcgcgg gcggctcggg catcggcgcc ggctcgatcg
     4681 tcgtcggcgc gagcgtgccg acctcgaccg aatccgccgg cttgggcccg agcggcgcgc
     4741 gctcctcctc gtcgcggacc ggcggcagtt cctccggcag ctggtcctgc ggcatcggcg
     4801 agggcgacat gccggaggga atggcggcca ccttcgccgg cgcggccgcc tccggcgccg
     4861 cgaccgggct cccgccgccg gcgatgtcgc gcagcagcgc ggcgacgctg gccgcatcga
     4921 acggctgcgc gaggtggaag tcggtctgcg tgcgcgcggc ggaggtcagg ccgatcacca
     4981 gcttgccggc cgcgtgcagg cgcagccagc tcatcgggcc gtacatgctg tccatgtcga
     5041 ccacgacgta gtcggcattc tggtcgggca ccagccgcca ggcgcgcccg agctgggcgt
     5101 tggcctgttc gaaggcggcc ttgagcgcgc tctccgtcgc cgggtccatg ccagtcatgc
     5161 cgagggtctg ggccatcgct tgcagtccgt gcgggaaagg tccgagttta gcgtgacgcc
     5221 cgcgggttgc gaccctgccg gcaggcaggg gcctaggcga tggcgccgtc ccgctgcgcg
     5281 gcgtgcaggc cggcgtcgaa gcgcggtgcg cgcttgggca gttgcgcctt caggaacgcc
     5341 atctggtcgg cgaggatgtt gcggttggcg aggatcaggt gctcgatcca tctcggccgg
     5401 tagggcaccg ccagcagcgg catgccggcc tgctgcgggg tgcggccgcc cttgcgcgag
     5461 ttgcagtgga agcaggcggc gaccacgttc tcccacacgt cgcggccgcc cttcgacagc
     5521 ggcatgacgt ggtcgcgggt gaggtggtgg cgggtggact cgcggccgca gtacaggcac
     5581 aggtgctggt cgcgcgcgaa cagcgcggcg ttggtcagcg cgggcgtggg atcgagcgcg
     5641 tgcgggcgcg gatggccgcg cgcggcgacg atcgggtgca gctccaccac gctctgcgcg
     5701 ccgctcgcgc gggaggtgcc gccgtgcacg cgcaggcagg gatcgccgag cgtccacgcg
     5761 accgcgccgc gcgcgtacag gcaggtggcg tcctgccagg acatccagtc gagcacgcgg
     5821 ccgtgcgcat cgagcgagag caggcgcacg gcgtccaggc gcgcgggcag ggcgcgatgg
     5881 gcgtggacgc ggaaagccgg ggcgacggag gcggagccgg catccgggga tccggcggat
     5941 cgggccaggc gcagggacgc tctgtcgctc tccatgccgc cgagcttata ccgccttcat
     6001 gacgccgtgt gcaggcggcg gtcgcgtttc ctggccggcg ccggttcgcg cgcgccgtgg
     6061 gcggcgatga agccgcgcac ctgcggatac acctgctcgc gccagcgtcg gccgctgaag
     6121 atgccgtaat gccccgcgcc ttcgaccgtg aggtgcgccc ggcggtcgtc gccgagcccg
     6181 gtgcacaggc cgtgggcggc gcgggtctgg ccgaggccgc agatgtcgtc gagttcgccc
     6241 tcgatggtga ggatcgcggt gtcgcggatc gccgcggggt cgacccgttc gcccgcgacg
     6301 tcccagccac cgcgcgcgag caggtgctgc tggaacacga tgcgcacggt gtcgaggtag
     6361 tactcggccg gcatgtcgag cacggcgttg tattcgtcgt agaagcggcg gtgcgcctcg
     6421 gcgtcgtcca ggtcgccgcg gaccaggtgg cagtagaagt cccagtgcga ctgcaggtgg
     6481 cgttcgggat tcatcgccag gaagccggcg tgctgcagga agccgggata cacgcggcgg
     6541 ccgcggcccg gatggttggc cggcaccgga tggatcaggt tggccgcgaa ccacgccagc
     6601 ggcttgcgcg tggccagcgt gttgaccgcg gtcgggcttt cgcgggagtc gatcgggccg
     6661 cccatcatca ccagcgagcg cggcgtcgcc tcgccgcgcg cggcgagcag cgagaccgcg
     6721 gcgagcaccg gcacggtcga ctggcagacg ctgaccacgt gcagccgcga cgcgcccagt
     6781 gtcgcgatga agccttcgat ggtggcgacg tagtcgtcga ggctgaaggt gccgagccgg
     6841 gccggcacga ggcgtgcatc gacccagtcg gtgacgtaaa cgtcgtggtc gcgcagcagc
     6901 gtgcgcacgg tgtcgcgcag gagcgtcgcg tggtggccgg acaacggcgc gaccacgagc
     6961 accgcgggat cgcggttgag gcgatcgagc accgcggcat cgtcggcggt acgccggaag
     7021 cgcaacaggc gacagaacgg cgtcgccatc acctcctgct cgagtaccgg gcaggcatgg
     7081 ccgtgcgcgt cgacgacggt gatcccgaac gcgggcttct cgtactcctt gccgagccga
     7141 tggatgagct cgtagccggc cgcgatgcgt ggcgcctcgg gccaggccgc gagccacgt
//
LOCUS       DATIQC010000465         2657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_453646, whole genome shotgun sequence.
ACCESSION   DATIQC010000465 DATIQC010000000
VERSION     DATIQC010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453646"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VLM17_10075"
     CDS             complement(<1..285)
                     /locus_tag="VLM17_10075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter periplasmic adaptor subunit"
                     /protein_id="HSR65930.1"
                     /translation="MPRVPSVVAALAAAVLALAACGRQPAEAPRKDQAKPTVVTTAVL
                     APRPFHDALQALGTAQAQESVAITAKVSDVVTRLAFDSGQRVRAGQLLADM"
     gene            complement(402..1151)
                     /locus_tag="VLM17_10080"
     CDS             complement(402..1151)
                     /locus_tag="VLM17_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HSR65931.1"
                     /translation="MQLPLEFLTYAGIGFAAQLVDGALGMAYGVTASSLLLAFGVPPA
                     YASATVHAAECFTTGASAVSHHAFGNIDRALFRRLLLPGMLGAGIGAYLLANIDGSVL
                     KPWIAGYLLLMGVVIVAKAFREVPSARITTHLGPLGFCGALVDAMGGGGWGPIVASNL
                     LARGNEFRLTVGSVNAVEFFVTLSASAVFLATLGLAHWQIVAGLAAGGVLAAPLGAWL
                     VKRVRPRPMLCAVGLLVIALAARTLLHALAG"
     gene            complement(1314..2300)
                     /locus_tag="VLM17_10085"
     CDS             complement(1314..2300)
                     /locus_tag="VLM17_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003477207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HSR65932.1"
                     /translation="MTLTQLRYLVAIADSGLNITLAAERVHATQPGVSKQLKQLEDEL
                     GFLLFARRGRSLDSVTPAGRQVLAHARRAIAEAANIRALAANQRGETQGRLTLVTTDT
                     QARYVLPAAVSAVLRAFPQVSVHLQPAAEGEVLAQLASGQADFAVISTAGGPPGGGLA
                     VPLFRWRRVVVVPRSHPLAALDRVPTLSELAALPLLSYESSQRPESSLRRAFAAQGLE
                     PQFAMTAHEGDLLKTYVRAGLGVGLLAEMAVSLADDPDLRALPVPDAIPECTAWAVMP
                     RERVLRDYAVRLLQELAPQLDRHDLHRVVAGHAEPEWPLAPTWTERSRTTAG"
BASE COUNT          371 a          939 c         1036 g          311 t
ORIGIN      
        1 catgtcggcg agcagctggc ccgcgcgcac gcgctggccg ctgtcgaaag cgagccgcgt
       61 gaccacgtcg ctgaccttgg cggtgatcgc caccgactcc tgcgcctgcg cggtgcccag
      121 cgcctgaagc gcgtcgtgga acggacgcgg cgcgaggacg gcggtggtga cgacggtcgg
      181 cttcgcctgg tccttgcgcg gtgcctcggc cggctggcgg ccgcaggcgg cgagcgcgag
      241 gacggcggcg gccaaggcgg cgacgacgga gggaactctg ggcatcgaac ggatgggcga
      301 cgagggaacg cccgagtgta cggggcgccc atgaaggtgc cccgtgccgt ccggcctagg
      361 cggccgtggt caaccgcccg cttcgtgatg cgttgcgcgc ttcagccggc gagtgcgtgc
      421 agcagcgtgc gcgcggccag cgcgatcacc agcaggccga cggcgcacag catcggccgc
      481 ggccgcaccc gcttcaccag ccacgcgccc agcggtgcgg ccagcacgcc gccggcggcg
      541 aggccggcca cgatctgcca gtgggcgagg ccgagggtgg cgaggaacac cgccgacgcg
      601 ctgagggtga cgaagaattc gaccgcgttg acgctgccga cggtgaggcg gaactcgttg
      661 ccgcgtgcga gcaggttgct ggccacgatc gggccccagc caccgccgcc catcgcatcg
      721 accagcgcgc cgcagaagcc gagcgggccg aggtgggtgg tgatccgcgc cgacggcact
      781 tcgcggaacg ccttggcgac gatcaccacg cccatcagca gcaggtagcc ggcgatccac
      841 ggcttgagca cgctgccgtc gatgttcgcc agcaggtagg cgccgatgcc cgcgccgagc
      901 atgccgggca gcagcaggcg acggaacagc gcgcggtcga tgttgccgaa cgcgtggtgc
      961 gacaccgccg acgcaccggt ggtgaagcat tctgcggcgt gcacggtggc gctggcgtag
     1021 gccggtggca cgccgaaggc gagcagcagg ctggacgcgg tgacgccgta ggccatgccg
     1081 agcgcgccgt cgaccagctg cgcggcgaaa ccgatgccgg cgtacgtcag gaattcgagc
     1141 gggagctgca tgccgggcgc cggaaaggtc ggcgcattat ccggaggccg ttgctggctg
     1201 aacagggcgc tccgcgcggg cgcgcgcgcg catcttgccg ccgggtccgc cacgttccgc
     1261 tgccatcgcc gcaggagcgg gacgagccgc ccgcgccgcc acgccgcgat gcctcaaccg
     1321 gcggtcgtcc ggctccgctc cgtccacgtc ggcgccagcg gccactccgg ctcggcatgc
     1381 ccggcgacca cgcgatgcag gtcgtggcgg tcgagctgcg gggcgagctc ctgcaacagg
     1441 cgcacggcgt agtcgcgcag cacgcgttcg cgcggcatca ccgcccacgc ggtgcattcg
     1501 gggatcgcgt cgggcaccgg cagcgcgcgc aggtcgggat cgtcggccag gctcaccgcc
     1561 atctccgcga gcaggccgac gccgaggccg gcgcgcacgt aggtcttgag caggtcgcct
     1621 tcgtgcgcgg tcatcgcgaa ctgcggctcc aaaccctgcg cggcgaacgc gcggcgcagc
     1681 gaggactcgg gccgctgcga ggattcgtag ctgagcagcg gcagcgcggc gagttcggac
     1741 agcgtcggca cgcggtcaag cgcggccagc ggatgcgaac gcggcaccac caccacgcgc
     1801 cgccagcgga acagcggcac cgccaggccg ccgccgggcg gcccgccggc ggtgctgatc
     1861 accgcgaagt cggcctgccc gctggcgagc tgggccagca cctcgccctc cgcagcgggc
     1921 tgcaggtgca cgctcacctg cgggaacgcg cgcagcaccg ccgacaccgc cgccggcagc
     1981 acgtagcgcg cctgggtgtc ggtggtgacg agggtgagcc ggccctgcgt ctcgccgcgc
     2041 tggttggcgg cgagggcccg gatgttggcg gcttcggcga tcgcgcggcg cgcgtgcgcc
     2101 agcacctgcc ggccggccgg ggtgaccgag tccaggctgc gcccgcggcg cgcgaacagc
     2161 aggaagccga gttcgtcctc gagctgcttc agctgcttgg acacgccggg ctgggtggcg
     2221 tgcacgcgct cggcggcaag ggtgatgttg agcccggagt cggcgatggc gaccaggtaa
     2281 cggagctggg tgagggtcat ctgcggagtc ccggacatgg tcgcgaaggc gcaaggcgcg
     2341 aaggcgcatg cgggcgacat tccgggggcg cggacgggac catctcggcg gctccagccg
     2401 cggcgcgcgg cgagggaacg caccataccg ggggcgcgga cggcatgcca ccggcgcccg
     2461 ataaccggcg ggcatgaggg tcggcgcgct gctcatttcc gcgcggcacc cggcggggct
     2521 agggtttggc cagccatgcc ggagggccgc ccgcccgcct gcccgcggcc gcgccggcct
     2581 gccgttcgcg ttgaccggaa agggttcgcg gccgtgggca ccgccatcgg tgccgcctgg
     2641 ttgtcgagcc cgcccgc
//
LOCUS       DATIQC010000466         2256 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_100787, whole genome shotgun sequence.
ACCESSION   DATIQC010000466 DATIQC010000000
VERSION     DATIQC010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100787"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..458)
                     /locus_tag="VLM17_10090"
     CDS             complement(<1..458)
                     /locus_tag="VLM17_10090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006449345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatA domain-containing protein"
                     /protein_id="HSR65933.1"
                     /translation="MSFALLFPLGLAALAALALPLLLHLARRSEARITGFAALRWLRA
                     DPRPRRKRRFDERMLMGARLLLLAAFALLLAMPVLRGAPDRTPWVVAAPGVPASAARA
                     AAGSRRARLHWLAPGFPALDAPPPRDAAPLASLLRELDSTLPPGTPLTVLV"
     gene            complement(455..1363)
                     /locus_tag="VLM17_10095"
     CDS             complement(455..1363)
                     /locus_tag="VLM17_10095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014035489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HSR65934.1"
                     /translation="MAAPSPDRLIPPDVRARLATLRLRTRRSASAAGHGVHASRHRGA
                     GMEFAQYRAYEPGDELRQVDWKLYARSDRFFVREAERESPLVAWLLLDATASMAQADE
                     ARPAWSKLDAACAIAACTIELALRQGDRFGVAALGADGLQLVPAGGGPRHRDRCLLAL
                     QRLRAGGGWPSPGRLRALWEAVPADALVLMLGDFFDDAATALAERFSGARREVLAVQL
                     LSVGERDFRYAGGHRFRDPESGEELLGDAAALRAGFLVRFGAARAALARRFAAAGIRH
                     APFVLDEPLDAPLRALFDPRATGGAT"
     gene            complement(1420..>2256)
                     /locus_tag="VLM17_10100"
     CDS             complement(1420..>2256)
                     /locus_tag="VLM17_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR65935.1"
                     /translation="GLGKTLLVRSLGQALELQFRRVQFTPDLMPSDILGTEILEEDHG
                     TGRRVFKFQPGPVFTSLLLADELNRTPPKTQAALLEAMQERTVSYAGVTHALPAPFFV
                     LATQNPLEQAGTYPLPEAQLDRFLLHVRVDYPSEAEERAILAQTTGAHAAEVPRVMDG
                     AAVLALQALVREVHVGDDLLAWITRLVRASRPQAGASEDVRQWLRWGAGPRAGQSLVL
                     ASKARALLHGRLAATREDVAALAAPVMRHRLLLSFAAEAEQKTTDDVVAGLLRDLPFP
                     AG"
BASE COUNT          306 a          830 c          888 g          232 t
ORIGIN      
        1 accagcaccg tcagcggcgt gccaggcggc agggtggagt cgagctcacg cagcaggctg
       61 gcgagcggcg ccgcatcgcg tggtggcggc gcgtcgagcg cgggaaagcc gggagcgagc
      121 cagtgcaggc gggcgcggcg cgagccggcg gcggcgcggg ccgcggacgc gggtacgccc
      181 ggggcggcca ccacccacgg cgtgcggtcc ggcgcgccgc gcagcaccgg catcgccagc
      241 agcagcgcga aggccgccag cagcagcaac cgcgcgccca tcagcatgcg ctcgtcgaag
      301 cggcgcttgc ggcgcggccg cgggtccgcg cgcaaccagc gcagcgcggc gaacccggtg
      361 atgcgcgcct cgctgcgacg ggcgaggtgc agcagcagcg gcagcgccag cgcggccagc
      421 gcggcgaggc cgagcgggaa gagcagcgcg aagctcacgt cgcgccgccc gtcgcgcgtg
      481 gatcgaacag cgcgcgcagc ggcgcgtcga gcggctcgtc gagcacgaag ggcgcatggc
      541 ggatgccggc cgcggcgaag cgccgcgcca gcgccgcgcg cgccgcgccg aagcggacca
      601 ggaaaccggc acgcagcgcg gcggcgtcgc cgagcagttc ctcgccgctc tccggatcgc
      661 ggaagcgatg gccgccggcg tagcggaagt cgcgctcgcc cacgctcagc agctgcaccg
      721 ccagcacctc gcggcgcgcg ccggagaatc gttcggccag cgcggtcgcg gcgtcgtcga
      781 agaagtcgcc gagcatcagc acgagcgcgt cggccggcac ggcctcccac agcgcgcgca
      841 ggcgtcccgg cgacggccag ccaccgcccg cgcgcaggcg ctgcagcgcg agcaggcagc
      901 ggtcgcgatg gcgcggaccg ccgccggccg gcaccagctg caggccgtcc gcgccgagcg
      961 cggcgacgcc gaagcggtcg ccctggcgca gcgcgagctc gatcgtgcag gcggcgatcg
     1021 cgcaggccgc gtcgagcttg ctccacgcgg ggcgcgcttc gtcggcctgg gccatcgagg
     1081 cggtggcgtc gagcagcagc cacgcgacca ggggactctc gcgttcggct tcacgcacga
     1141 agaaacggtc cgaacgcgcg tacagcttcc agtcgacctg gcgcagctcg tcgccgggct
     1201 cgtaggcacg gtattgcgcg aactccatgc cggcgccgcg atgccggctg gcgtgcacgc
     1261 cgtggcccgc ggcgctggcg ctgcgccgcg tgcgcaggcg cagcgtggcc agccgcgcgc
     1321 gcacgtcggg cgggatgagg cggtcgggcg acggagcggc catggcggga aggctggcat
     1381 gccgcacgcg cggcctgcgc gttgcgtgcg gcgcggcggt cagccggcgg gaaagggcag
     1441 gtcgcgcagc aggccggcga ccacgtcgtc ggtcgtcttc tgctcggcct cggcggcgaa
     1501 ggacagcagc agccggtggc gcatcaccgg cgcggccagc gcggcgacgt cctcgcgcgt
     1561 cgcggccagg cgaccatgca gcagcgcgcg cgccttcgag gccagcacca gcgactgccc
     1621 ggcgcgcggg cccgcgcccc agcgcagcca ctggcgcacg tcctcgctcg cgccggcctg
     1681 cggacggctc gcgcgcacca gccgcgtgat ccacgcgagg aggtcgtcgc cgacgtgcac
     1741 ctcgcgcacc agcgcctgca gcgcgagcac cgccgcgccg tccatcacgc ggggcacctc
     1801 ggcagcgtgc gcgccggtgg tctgggcgag gatcgcgcgt tcctcggcct cgctcgggta
     1861 gtccacgcgc acgtgcagca ggaagcgatc gagctgcgcc tccggcagcg ggtaggtgcc
     1921 ggcctgctcg agcgggttct gggtggccag cacgaagaac ggcgccggca gcgcatgggt
     1981 gaccccggcg tagctgacgg tgcgttcctg catcgcctcc agcaatgcgg cctgggtttt
     2041 cggcggcgtg cggttgagct cgtcggcgag cagcaggctg gtgaacaccg gccccggctg
     2101 gaacttgaac acgcgccggc cggtgccgtg gtcctcctcg aggatctcgg tgccgaggat
     2161 gtcgctgggc atcaggtcgg gcgtgaactg cacgcggcgg aactgcaact ccagcgcttg
     2221 gcccagcgat cgcaccagca gcgtcttgcc caggcc
//
LOCUS       DATIQC010000467         1600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_383067, whole genome shotgun sequence.
ACCESSION   DATIQC010000467 DATIQC010000000
VERSION     DATIQC010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383067"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1123)
                     /locus_tag="VLM17_10105"
     CDS             complement(<1..1123)
                     /locus_tag="VLM17_10105"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HSR65936.1"
                     /translation="MDTSRSHALFTRAQALMPGGVNSPVRAFKSVGGEPFFVQRAEGA
                     YLVDVDGNRYIDYVGSWGPMIVGHNHPQVLDAVIRTARDGLSFGTPNPLEVTMAEAIT
                     RLIPSCEMVRMVNSGTEATLSAIRLARGATGRARIVKFEGCYHGHGDSFLVKAGSGAL
                     TFGVPTSPGVPKALADLTLTLPYNDFDAATALFDECGADIAGLIIEPVVGNANCLPPR
                     EGYLQHLRALCTQYGALLIFDEVMTGFRVALGGAQARYGVTPDLSTFGKVIGGGMPVG
                     AYGGRRELMQQIAPSGPVYQAGTLSGNPVATACGLATLKEIARPGFFEALAARRPSPS
                     RFVRRSSVRYSVAFSFEIDHRPAVTASGLPDSVPAWYIGP"
     gene            complement(1138..>1600)
                     /gene="thiE"
                     /locus_tag="VLM17_10110"
     CDS             complement(1138..>1600)
                     /gene="thiE"
                     /locus_tag="VLM17_10110"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HSR65937.1"
                     /translation="LALRALCADAGVAFIVNDDVELARATDADGVHLGEHDARPDAAR
                     ARLGPDAIIGGSCYADLDRAEAAARAGASYVAFGAFFPSPTKPLARRATPELLRAAAC
                     LGLPRVAIGGIRPDNAAPLVAAGADLIAVISGVFAAPDPAAAARACADLFD"
BASE COUNT          217 a          558 c          611 g          214 t
ORIGIN      
        1 ccggcccgat gtaccaggcc ggcacgctgt ccggcaaccc gctcgccgtc accgccggcc
       61 tgtggtcgat ctcgaagctg aacgccacgc tgtatcgcac gctcgatcgc ctgacgaagc
      121 ggctcggcga cggcctgcgt gccgccagcg cctcgaagaa cccggggcgg gcgatctcct
      181 tcagcgtcgc cagcccgcag gccgtggcca ccggattgcc gctgagcgtg ccggcctggt
      241 agaccggccc gctcggcgcg atctgctgca tcagctcgcg gcggccgccg tacgcgccta
      301 ccggcatgcc gccgccgatc accttgccga aggtgctgag gtcgggcgtg acgccgtagc
      361 gcgcctgcgc gccgccgagg gcgacgcgga agccggtcat cacctcgtcg aagatcagca
      421 gcgcgccgta ctgcgtgcac agcgcgcgca ggtgctggag gtagccctcg cgtggcggca
      481 ggcagttggc gttgccgacc accggctcga tgatcaggcc ggcgatgtcg gcgccgcact
      541 cgtcgaacag cgcggtggcg gcgtcgaagt cgttgtaggg cagggtcagg gtgaggtcgg
      601 ccagcgcctt gggcacgccc ggcgaggtcg gcacgccgaa ggtcagcgcg ccgctgccgg
      661 ccttgaccag gaagctgtcg ccatggccgt ggtagcagcc ctcgaacttg acgatgcgcg
      721 cgcgcccggt cgcgccgcgg gcgagccgga tcgccgacag cgtcgcctcg gtgcccgagt
      781 tcaccatgcg caccatctcg cagctcggga tgaggcgggt gatggcttcg gccatcgtca
      841 cctcgagtgg gttcggcgtg ccgaacgaga ggccgtcgcg cgcggtgcgg atcaccgcgt
      901 cgagcacctg cggatggttg tggccgacga tcatcgggcc ccacgagccg acgtagtcga
      961 tgtagcggtt gccgtcgacg tcgaccaggt aggcgccttc cgcgcgctgc acgaagaacg
     1021 gttcgccgcc gaccgacttg aacgcgcgca ccggcgagtt gacgccgccc ggcatgagcg
     1081 cctgggcgcg ggtgaacagg gcgtgcgagc ggctggtgtc catcgtggaa tccggggtca
     1141 gtcgaagagg tcggcgcagg cgcgcgccgc ggcggcgggg tcgggcgcgg cgaacacgcc
     1201 gctgatgacc gcgatcaggt cggcgccggc cgcgaccagc ggcgccgcat tgtccggcct
     1261 gatcccgccg atcgccaccc gcggcaggcc caggcaggcg gcggcgcgca gcagctccgg
     1321 cgtcgcccgc cgggccagcg gcttggtcgg tgacgggaag aaggcgccga aggcgacgta
     1381 gctcgcaccc gcgcgtgccg ccgcttcggc gcggtcgagg tcggcgtagc acgagccgcc
     1441 gatgatggcg tcggggccga gtcgcgcgcg ggccgcgtcg gggcgggcat cgtgttcgcc
     1501 gaggtgcacg ccgtcggcat cggtcgcgcg cgcgagttcg acgtcgtcgt tgacgatgaa
     1561 tgcgacgccg gcatcggcgc atagcgcacg cagggccagc
//
LOCUS       DATIQC010000468         3321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_560524, whole genome shotgun sequence.
ACCESSION   DATIQC010000468 DATIQC010000000
VERSION     DATIQC010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560524"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..878)
                     /locus_tag="VLM17_10115"
     CDS             complement(72..878)
                     /locus_tag="VLM17_10115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007965588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:1990397 - queuosine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="queuosine precursor transporter"
                     /protein_id="HSR65938.1"
                     /translation="MPDTSLAPLRRTAARVLDDRATVLFLALAAFFCVNAVLAEFIGV
                     KIFALEDTLGIRPLQWNLFGQSGSLNFTAGTLLWPIVFIMTDTINEYYGRRGVRFISW
                     LAAGLIAYGFAFAFVAIHLAPASWWVGVAKDQGVPDYQAAFSAVFGQGLWTIWGSLVA
                     FILGQLIDVSVFHRIRRATGERHAWLRATGSTAVSQLVDSFVVLYIAFVLGPQQWPIS
                     LFLAVGLVNYVYKASFALIATPVLYAVHRLIDGWLGHDVAEAMKRRAAEP"
     gene            complement(895..1575)
                     /locus_tag="VLM17_10120"
     CDS             complement(895..1575)
                     /locus_tag="VLM17_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF502 domain-containing protein"
                     /protein_id="HSR65939.1"
                     /translation="MHTPPSFGLRLQRLFLTGLLTLLPIWLTWVVVKFVFGMLSDISR
                     PLIGPALHNLAVQDPAHSAWLDDPWVQTALAVLATVLVVLLAGWLARRVFGQRLLRWF
                     EALVSRIPLASTVYGSARKLFDILQTQPDGTQRVVLLDFPHRGIKAVGFVTRTLHEEG
                     TGRELAAVYVPTTPNPTGGYLELVPIEELTPTDWSVDEAMSFIISGGAVAPDRIPFAP
                     PARVSTDA"
     gene            complement(1668..>3321)
                     /locus_tag="VLM17_10125"
     CDS             complement(1668..>3321)
                     /locus_tag="VLM17_10125"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional serine/threonine-protein
                     kinase/formylglycine-generating enzyme family protein"
                     /protein_id="HSR65940.1"
                     /translation="HAHARGVVHRDVKAENVLFDEAERPLLADFGIALRRFGPRVTTA
                     GMAVGSTAYMAPEQARGEEVDARADLYAVGVLAWEMLTGQLPYMAGDALSMAVMHAQD
                     PIPRLPRPLRHWQRFFDRALAKSPAQRFRNAQQMREALDRVPRHGGSPMAALRDGGRH
                     AIAGMRRWPITVWLGLMLLVAAGVGIGLREMNRAPADGFFRAVTDRVAGALPTPGARP
                     GQPVVGEPLDPTFRPLPQSPAEPFLAAAEQQLRTRNLTAPSDRNATDSLLAAWKADPH
                     HPRLAADTTSVIDALADEGAQRVRDGDGSRARDYLDRASRLAAVAGKQADPVLARMRA
                     RLDKALDNRMAEATSHADRAGAQRVVDSARALGMPVARIDALAARAKDIPSAGDALPG
                     DASMRLVRSGDGLVALALRQVDRADYARFANSTARDAALCRQRISLLRLVRPISWQAP
                     GFVQTPAQPVVCVSWADANAYAQWLGRKTGFHYRLPRAAEARALPATEGGRAVGEWLG
                     ECGNGCSEHLSGGRSWRGGSGTRPLDGSRGYDDVGFRLVREL"
BASE COUNT          501 a         1152 c         1243 g          425 t
ORIGIN      
        1 attcgcacgc tcttggcaag aaaacggcgt gcgaatgaga ttcgcaccca cagacaatga
       61 cgcccgcaaa atcacggttc ggcggcgcgg cgtttcatcg cttcggcgac gtcgtggccg
      121 agccagccgt cgatcagtcg atgcacggca tacagcaccg gcgtggcgat caacgcgaaa
      181 ctggccttgt acacgtagtt gaccaagccg accgcgagga acagcgagat cggccactgc
      241 tgcggcccga gcacgaaggc gatgtagagc acgacgaagc tgtcgaccag ttgcgagacc
      301 gcggtcgagc cggtcgcgcg cagccacgcg tggcgctcgc cggtggcgcg gcggatgcgg
      361 tggaagacgc tgacgtcgat cagctggccg aggatgaagg cgaccagcga gccccagatc
      421 gtccacaggc cctggccgaa caccgccgaa aacgcggcct ggtagtcggg cacgccctgg
      481 tccttcgcca cgcccaccca ccacgaggcc ggcgcgaggt ggatcgcgac gaaggcgaag
      541 gcgaagccgt aggcgatcag gcccgcggcg agccagctga tgaaacgcac gccgcgacgg
      601 ccgtaatact cgttgatcgt gtcggtcatg atgaacacga tcggccacag cagcgtgccg
      661 gcggtgaagt tgagcgagcc cgactggccg aacaggttcc attgcagcgg ccggatgccg
      721 agggtgtcct cgagcgcgaa gatcttgacg ccgatgaact ccgccagcac cgcgttgacg
      781 cagaagaacg cggccagcgc gaggaacagc accgtcgccc gatcgtcgag cacgcgcgcg
      841 gcggtccgtc gcaggggggc gaggctggtg tcgggcatgt ccatcgcggc tccgtcaggc
      901 gtcggtcgaa acgcgcgcgg gtggcgcgaa aggaatgcgg tcgggcgcca cggcgccgcc
      961 cgaaatgatg aagctcatcg cttcgtccac gctccagtcg gtcggcgtga gctcctcgat
     1021 cggaaccagc tcgaggtagc caccggtcgg gttgggcgtc gtcggcacgt acaccgcggc
     1081 gagttcgcgg ccggtgcctt cctcgtgcaa cgtgcgggtg acgaagccga ccgccttgat
     1141 gccgcgatgc gggaagtcga gcagcaccac ccgctgggtg ccatccggct gggtctgcag
     1201 gatgtcgaag agcttgcgcg cgctgccgta cacggtgctg gccagcggga tgcggctgac
     1261 cagcgcctcg aaccagcgca gcaggcgctg gccgaagacg cgccgcgcca gccagccggc
     1321 gagcagcacg acgaggaccg tcgccagcac ggcgagcgcg gtctgcaccc acgggtcgtc
     1381 cagccacgcc gaatgcgccg gatcctggac cgcgagattg tgcagcgccg ggccgatcag
     1441 cgggcggctg atgtccgaga gcatgccgaa cacgaacttg accaccaccc aggtgagcca
     1501 gatcggcagc agggtcagga ggccggtgag gaacaggcgc tgcaggcgca ggccgaacga
     1561 ggggggcgtg tgcatcggcg gattctacgg gcgcccgggc cgcgccgtgc gcgggcggtt
     1621 gccacgcggc gcgatcctcg gccttgcgcc cgggcttcgc cgccgcctta cagttcccgc
     1681 accagccgga agccgacgtc gtcgtagcca cggctgccgt cgagcgggcg cgtgcctgac
     1741 ccgccgcgcc agctccgccc gccgctcagg tgctcgctgc agccgttgcc gcattcgccg
     1801 agccattcgc cgacggcgcg gccgccttcg gtggccggca gggcacgcgc ctcggccgcg
     1861 cgcggcaggc ggtagtggaa accggtcttg cggccgagcc actgcgcgta ggcgttggcg
     1921 tccgcccagg acacgcacac caccggctgc gccggcgtct gcacgaagcc cggtgcctgc
     1981 caggagatcg gccgcaccag ccgcagcagc gagatgcgct ggcggcacag cgctgcatcg
     2041 cgtgcggtgg aattggcgaa gcgcgcgtag tccgcgcggt cgacctggcg gagggccagc
     2101 gcaaccaggc catcgccgct gcgcaccagt cgcatgctgg cgtcgccggg cagcgcgtcg
     2161 ccggcggagg gaatgtcctt ggcgcgtgcc gccagcgcgt cgatgcgtgc gaccggcatg
     2221 ccgagcgcac gcgcgctgtc gacgacccgc tgcgcgcccg cgcggtccgc gtggctggtg
     2281 gcttccgcca tgcggttgtc gagggccttg tccagcctgg cgcgcatgcg cgcgagcacc
     2341 gggtcggcct gctttccggc gacggccgcc aggcggctgg cgcggtcgag gtagtcgcgc
     2401 gcgcggctgc cgtcgccatc gcgcacccgc tgcgcgccct cgtcggccag cgcatcgatg
     2461 accgaggtgg tatcggccgc gaggcgcgga tggtgtggat ccgccttcca cgccgccagc
     2521 aggctgtcgg tggcgttgcg gtcggacggc gcggtgaggt tgcgcgtgcg cagttgctgc
     2581 tcggcggcgg cgaggaacgg ctcggcgggc gattgcggca gcggacggaa ggtcgggtcg
     2641 agcggctcgc cgacgaccgg ttggcccggg cgcgcgcccg gcgtgggcag cgcgccggcg
     2701 acccggtcgg tgaccgcgcg gaagaagcca tcggcggggg cgcggttcat ttcgcgcagg
     2761 ccgatgccca cgcccgccgc gaccagcagc atcagcccga gccacaccgt gatcggccag
     2821 cggcgcatgc ccgcgatcgc atggcggccg ccgtcgcgca gcgccgccat cggcgaaccg
     2881 ccatggcgtg ggacgcggtc gagggcctcg cgcatctgct gcgcgttgcg gaagcgctgc
     2941 gccggcgact tcgccagcgc gcgatcgaag aagcgctgcc agtggcgcag cgggcgcggc
     3001 aggcgcggga tcggatcctg cgcgtgcatc accgccatcg acagcgcgtc gccggccatg
     3061 tagggcagct gcccggtcag catctcccag gcgagcacgc cgaccgcgta caggtcggcg
     3121 cgcgcgtcga cctcctcgcc gcgcgcctgc tcgggcgcca tgtaggcggt gctcccgacc
     3181 gccatgccgg cggtggtcac gcgcgggccg aagcggcgca gggcgatgcc gaagtcggcc
     3241 agcagcgggc gctcggcctc gtcgaacagg acgttttcgg ccttgacgtc gcggtggacc
     3301 acgccgcgcg cgtgcgcgtg c
//
LOCUS       DATIQC010000469         7981 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_171056, whole genome shotgun sequence.
ACCESSION   DATIQC010000469 DATIQC010000000
VERSION     DATIQC010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7981
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171056"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1491)
                     /locus_tag="VLM17_10130"
     CDS             complement(<1..1491)
                     /locus_tag="VLM17_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HSR65941.1"
                     /translation="MRRLLPASALLALALAGCQGMPAPTATKEAPVASAAVASTADAR
                     FAEISSHWLDGWMRLNPVAATQLGDHRFDDRVDDTSAEGRRQLVDFSKALLAQLDGID
                     ASKLSRENQVDALILRNQLRSDIWNMETLQSWAWDPQGYQGLAGGAIYNLMAREFAPM
                     PQRLKSATARMEQIPTLFAQMRANLDPARVPKIHAETVARQTGGLLELVDGFITPNAG
                     QLTGADRARLDAAVANLRKAVAEQQAWLDKTLVPNAKGDFRIGEKLYDEKLQLSLMSS
                     LSRAEIRQRAESELKRVRGEMYAIAQQVLKGRKGAPKTPDNPTDDQRQKAIEAALELA
                     YAEHPSRAGVVDAAKAALAQATDFVRTHNLVSVPSDPVKVILMPEFQRGVAVAYCDSP
                     GPLDKGLDTYFAISPIPDEWSKQQADSFLREYNSRMIHLLTIHEAMPGHYLEGAYSTR
                     YPSTLRGVLRSGLFAEGWAVYTENMMQHAGYMNGDPLFHLVQLKFYL"
     gene            complement(1640..1936)
                     /locus_tag="VLM17_10135"
     CDS             complement(1640..1936)
                     /locus_tag="VLM17_10135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007511108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65942.1"
                     /translation="MLTLRMRVTGSEDDVRAMMNLLQSLDGIEHVEEVSDLMPHGDDP
                     DSSSAGLSENTVAPDAHEIEIEAPNVSTARKVREAVESLAFDLDTLVEFEEEED"
     gene            2171..4120
                     /locus_tag="VLM17_10140"
     CDS             2171..4120
                     /locus_tag="VLM17_10140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HSR65943.1"
                     /translation="MSAEPAASLEVALAHAQRLLASDPALAAEQACEILRVVPGQPVA
                     QRLLAAAHVLRGDVDGALAILQPLAQQHPQWARVQLDLGLALGRARRGAEALAALQRA
                     VALDPKLPGAWRALGDHLAGAGDTAGADAAYAAHVRHSPADPALLAAAHALAEGRIPE
                     AEAQLRALLRRAPTDVAAIRMLAEVAARQQHALVLNRGNRHAEALAEVEALLAIEPAN
                     PGYRNLKAVILGRIGDYPRAIALYDQLLAEYPAHAQLSMSYGHALKTAGDTPRAVEAY
                     RRSIALDPACGEAYWSLANLKTFRFDDDDVAAMRAQLARADLADDARLHFEFALGKAG
                     EDAGEHAQSFAHYARGNALRRAQLPYDADDNHARVERARRTYTRDFLAARAGWGAQAR
                     DPIFIVGLPRAGSTLLEQILSSHSQVEGTMELPEVIALTRELRRAGGVPQSTSYHDVL
                     AGLDAAAVRGLGERYLERTRIQRHGGAPLFIDKMPNNFAHVGLIHLALPNARIIDARR
                     HPLACCFSAFKQHFARGQAFSYGLADLGRYYRDYVALMAHFDAVLPGRVHRVTYERLV
                     EDTEAEVRRLLGYCGLPFEDACLRFHENPRAVRTASSEQVRRPIYRDGVDHWRRFEPW
                     LAPLKEALGPVLDAYPEAPAFPPPG"
     gene            4142..6712
                     /locus_tag="VLM17_10145"
     CDS             4142..6712
                     /locus_tag="VLM17_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007509403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HSR65944.1"
                     /translation="MQRSARTTRDRLSPGRLPARLPLAAAIYLAFGSLAWAQDAAPQP
                     PPAEAGKPATRKQATLETVTVTAQKRVEDVQKVPISLQAISETKLTQQDVHSFDDYAK
                     LLPSVTFGTAGGGVFSGPGFVQVYMRGVASGDNGNHSGPQPSVGMYLDEEPITTIQGA
                     LDVNIYDVQRIEALAGPQGTLYGASSQAGTIRIITNKPDPSGFAGGYSLEANTVEDGG
                     NGYVAQGFFNAPLTGSAAVRVVAWKRRDAGYVDNVAGTRQFPIRDPAAGEPPSWGGVL
                     DNTADCVASAQRVCTHNADDDYNWADTLGARAALKIDLNDSWSITPAIMGQHQEANGS
                     TGYDPSVGDLKVLHFYPEHSNDRWNQAALTVQGKIGNFDLVYAFAHLRRDVDSQADYT
                     DYGFWYDSSPADYGQYFCSDFDPNSFSCAPGTLINMSQHIDAKDGYRKSSHELRVTSQ
                     KEDRLRLVAGLFWQRQGHDIFQRYFMDGLSAVQEVPGWPDTIWLTAQQRTDRDKAVFG
                     ELSFDLTKSLTATVGGRWFHNDNSLKGFFGYGDWGWSSTAGVAACFSDEQFHGAPCVD
                     LDKDVRESGRIGRANLTWQLTNDKLVYATWSEGYRPGGINRRGTIPPYQSDFLTNYEL
                     GWKTTWGDNVLTWNGAVFQDNWNNFQFSYLGQNGLTEIRNAARARIRGLETDVRWAAT
                     YNLALTAAAAFYDAKLTQDYCGKLSPVTGKAITDCPVGSTVDGVFFPDGAEAPAGSRL
                     PVTARFKGNVTARYTFDLWGGEAFGQAAVIHEGSRRTDLRAAAANTLGDLKPYTITDL
                     SAGFRRNNWSVDVFLKNAFNTRAQLTRFTECAVGTCGGQPYTVVAQPRTFGVRFSQDF
                     "
     gene            complement(6786..7700)
                     /locus_tag="VLM17_10150"
     CDS             complement(6786..7700)
                     /locus_tag="VLM17_10150"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007962980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSR65945.1"
                     /translation="MRPALPATLSLLVLALATALPLQAAAPAKPKSMQELLDASKPSD
                     WHRLDPADTLYLELAGGRVVIELAPDFAPRHAANIRALAHEGYWNGLSINRSQDNFVV
                     QWGDPAEDDKARRPLGAAQAHLPAEFTRSAQGMRFERLPDADGWAPQVGFSGDFAAAR
                     DPGTNTAWLAHCYGTVGAGRDMAADSSNGSELYVVDGQSPRQLDRNITVVGRVVQGME
                     LLSTLPRGTGPLGFYEKAEQRVPIKAITLASDLPEAQRTPLEVLRTDTPLFRDVVESR
                     RNRRDDWYKVPAGHIDLCNVPLPVRTPK"
     gene            complement(7733..>7981)
                     /locus_tag="VLM17_10155"
     CDS             complement(7733..>7981)
                     /locus_tag="VLM17_10155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65946.1"
                     /translation="GGDGVLWWWFDSLGFPPEPARGHWDGDTLRFEKHTPRGSARYRF
                     EFDGDDRYRFVIENRLGDAAEYSEFMRGDYVRVPALHA"
BASE COUNT         1188 a         2888 c         2758 g         1147 t
ORIGIN      
        1 caggtagaac ttcagctgca cgaggtggaa cagcggatcg ccgttcatgt agccggcgtg
       61 ctgcatcatg ttctcggtgt agacggccca gccttcggcg aacaggccgg accgcaatac
      121 gccgcgcagg gtcgacggat aacgcgtcga atacgcgcct tcgaggtagt gccccggcat
      181 cgcctcgtgg atggtcagca ggtggatcat ccggctgttg tactcgcgca ggaaggaatc
      241 cgcctgctgc ttcgaccact cgtccgggat cggcgaaatg gcgaagtagg tgtcgaggcc
      301 cttgtcgagc ggccccggcg aatcgcagta ggccaccgcg acgccgcgct ggaattccgg
      361 catcaggatc accttcaccg gatcgctcgg cacgctgacg aggttgtgcg tgcgcacgaa
      421 gtcggtcgcc tgcgcgagcg cggccttggc ggcgtcgacc acgcccgcgc ggctgggatg
      481 ctcggcgtag gcgagttcga gcgcggcctc gatcgccttc tggcgctggt cgtcggtcgg
      541 attgtccggc gtcttcggcg cgcccttgcg gcccttgagc acctgttgcg cgatggcgta
      601 catctcgccg cgcacgcgct tcaattcgga ctcggcacgc tggcggatct cggcgcgcga
      661 cagcgacgac atcagcgaga gctgcagctt ctcgtcgtaa agcttctcgc cgatgcggaa
      721 gtcgcccttc gcgttcggca ccagcgtctt gtcgagccac gcctgctgct cggccaccgc
      781 cttgcgcagg ttggcgaccg cggcatccag gcgcgcacgg tcggcgccgg tgagctgtcc
      841 ggcgttcggg gtgatgaacc cgtcgaccag ctcgagcagg ccgccggtct gcctggcgac
      901 cgtttcggcg tggatcttcg gcacgcgcgc cggatcgagg ttggcgcgca tctgcgcgaa
      961 cagcgtcggg atctgctcca tgcgcgcggt ggccgacttc agccgctgcg gcatcggcgc
     1021 gaactcgcgc gccatcaggt tgtagatggc gccgccggcg aggccctggt agccctgcgg
     1081 gtcccaggcc caggactgca gcgtctccat gttccagatg tccgagcgca gctggttgcg
     1141 caggatcagc gcgtcgacct ggttctcgcg cgagagcttg gacgcatcga tgccgtcgag
     1201 ttgcgcgagc agcgccttgc tgaagtcgac cagctgccgg cggccctccg cgctggtgtc
     1261 gtcgacgcgg tcgtcgaagc ggtggtcgcc cagctgggtg gccgcgaccg ggttgagccg
     1321 catccagcca tcgagccagt ggctcgagat ctccgcgaag cgcgcatcgg cggtgctggc
     1381 cacggccgcg gaggccaccg gcgcctcctt cgtggcggtc ggcgcaggca tgccctggca
     1441 accggcgagg gcgagggcga gcagggcgga agcgggcagc aggcgacgca tggggattcc
     1501 ttggggcggg ccgaaggcca ttcccccaag gataacggta ccgccctcgc ggctgccggc
     1561 cgcacgccgg ggccgccccg ggggcgcctc ccggactgaa tgattcatcg ccggcggccg
     1621 atggccgccg gacggatcgt cagtcttcct cttcctcgaa ctcgaccagc gtgtcgagat
     1681 cgaaggcgag cgattcgacg gcctcgcgca ccttgcgcgc ggtcgacacg ttcggcgcct
     1741 cgatctcgat ctcgtgcgcg tccggcgcga ccgtgttctc gctcaggccg gcggaactgg
     1801 aatcgggatc gtcgccgtgt ggcatcaggt ccgacacttc ctcgacgtgc tcgatgccat
     1861 ccaggctctg cagcaggttc atcatcgcgc ggacatcgtc ctcgctgccg gtcacgcgca
     1921 ttcgcagggt caacatggcg cgcctcgcgc ggtggggaat gcggacaggc tggcgggcgc
     1981 ggcctcaatg gcacgtgacg ggcgccgccc cgcgcgggtg ctggacgtcg cgaacgacgg
     2041 cggcgtagat tggcctgcgc ccggcatggc cgcggcatgg ggcggggaag gggatgcagg
     2101 agatccgcac ggatcggccc gtcatgcgcg cccgcgcggc gcccggtcgc cgcgcacgcg
     2161 gagcccgccg gtgagcgccg aaccggccgc ttcgctggag gtcgcactgg cccacgcgca
     2221 gcgcctgctg gcgagcgatc cggcgctcgc ggccgaacag gcctgtgaga tcctgcgcgt
     2281 ggttcccggc cagccggtcg cgcagcgcct gctggcggcc gcgcacgtcc tgcgcggcga
     2341 cgtcgacggc gcgctcgcca tcctccagcc gctcgcgcag cagcatccgc agtgggcccg
     2401 cgtgcagctc gacctcggcc tcgcgctggg ccgggcgcgg cgcggggcag aggcgctggc
     2461 cgcgctgcag cgcgcggtgg cgctggaccc gaagctgccc ggcgcgtggc gcgcgctcgg
     2521 cgaccacctc gccggggccg gcgacaccgc cggcgcggac gcggcctatg cggcgcacgt
     2581 gcgccattcg cccgccgacc ccgcgctcct cgccgccgcg catgcgctcg ccgaaggccg
     2641 gatcccggag gccgaggcgc agctgcgcgc gctgctccgg cgcgcgccca ccgacgtcgc
     2701 cgcgatccgc atgctggccg aggtcgccgc gcgccagcag cacgcgctgg tactcaaccg
     2761 tggcaaccgc catgccgagg cgctggcgga ggtcgaggca ctgctggcca tcgagccggc
     2821 caacccgggc taccgcaacc tcaaggcggt catcctcggc cgcatcggcg actacccgcg
     2881 ggcgatcgcg ctgtacgacc agctgctcgc cgaatacccc gcgcatgcgc agctgtcgat
     2941 gagttacggc cacgcgctta agaccgcggg cgacacgccg cgcgcggtcg aggcctaccg
     3001 ccgcagcatc gcgctcgatc cggcgtgcgg ggaggcgtac tggtcgctgg ccaacctcaa
     3061 gaccttccgc ttcgacgacg acgacgtcgc ggcgatgcgg gctcagctgg cgcgcgccga
     3121 ccttgccgac gatgcgcgcc tgcacttcga attcgccctc ggcaaggccg gcgaggacgc
     3181 cggcgagcac gcgcagtcgt tcgcccatta cgcgcgcggg aacgcgctgc ggcgcgcgca
     3241 gctgccctac gacgccgacg acaaccacgc ccgcgtcgag cgcgcccgcc ggacctacac
     3301 gcgcgacttc ctcgccgcgc gcgccggctg gggcgcgcag gcgcgcgacc cgatcttcat
     3361 cgtcggcctg ccgcgcgcgg ggtcgaccct gctcgagcag atcctgtcca gccattcgca
     3421 ggtcgaaggc acgatggagc tgccggaggt gatcgcgctg acccgcgagc tgcgccgtgc
     3481 cggcggggtc ccgcagtcga cctcctacca cgacgtgctg gccgggctgg acgccgccgc
     3541 ggtgcgcggg ctcggcgagc gctacctcga gcgcacgcgc atccagcgcc acggcggcgc
     3601 gccgctgttc atcgacaaga tgccgaacaa cttcgcccac gtcggcctga tccacctggc
     3661 cctgccgaac gcgaggatca tcgacgcgcg ccgccatccg ctggcgtgct gcttctccgc
     3721 gttcaagcag cacttcgcgc gcgggcaggc cttcagctac ggcctcgccg acctaggccg
     3781 ctattaccgc gactacgtcg ccctgatggc gcatttcgac gccgtgctgc cggggcgcgt
     3841 gcaccgcgtc acctacgaac gcctggtcga ggacaccgag gcggaagtgc ggcgcctgct
     3901 cgggtactgc gggctgccct tcgaggacgc ctgcctgcgc ttccacgaaa acccccgcgc
     3961 cgtgcgcacc gccagttccg aacaggtgcg ccggccgatc taccgcgacg gcgtcgacca
     4021 ctggcgccgg ttcgaaccgt ggctggcgcc gctcaaggaa gcgctcggcc ccgtgctcga
     4081 cgcctacccc gaagcccccg cgttcccgcc acccggctga tccaccagag gagaacggtc
     4141 catgcaacgc agtgcccgca cgacgcgcga ccgcctgtcc cccggccgtc ttcccgcccg
     4201 cctgccgctc gcggccgcca tctacctggc cttcggctcc ctggcctggg cgcaggacgc
     4261 ggcgccgcag ccgccgccgg ccgaggccgg caagcccgcc acccgcaagc aggccaccct
     4321 cgagacggtg accgtcaccg cgcagaagcg cgtggaggac gtgcagaagg tgccgatcag
     4381 cctgcaggcg atcagcgaga ccaagctgac ccagcaggac gtgcacagtt tcgacgacta
     4441 cgcgaagctg cttcccagcg tcaccttcgg caccgccggc ggcggcgtct tctccggccc
     4501 cggcttcgtg caggtgtaca tgcgcggcgt cgccagcggc gacaacggca accattccgg
     4561 cccgcagccg agcgtgggca tgtacctcga cgaggagccg atcaccacca tccagggcgc
     4621 gctggacgtc aacatctacg acgtgcagcg gatcgaggca ctggccgggc cgcagggcac
     4681 gctgtacggc gccagctcgc aggcaggcac catccgcatc atcaccaaca agccggatcc
     4741 gtccgggttc gccggcgggt actcgctgga agccaacacg gtcgaggacg gcggcaacgg
     4801 ctacgtcgcg cagggcttct tcaatgcgcc gctgaccggt tcggccgcgg tgcgcgtcgt
     4861 ggcctggaag cgccgcgacg ccggttacgt cgacaacgtg gcgggaaccc gccagttccc
     4921 gatccgcgac ccggcggcgg gcgagccgcc gagctggggc ggcgtcctcg acaacaccgc
     4981 cgattgcgtc gcctcggcgc agcgggtgtg cacccacaac gccgacgacg actacaactg
     5041 ggcggacacc ctgggcgcgc gcgcggcgct gaagatcgac ctcaacgaca gctggtcgat
     5101 cacccccgcg atcatgggcc agcaccagga agccaacggc agcaccggct acgacccgtc
     5161 ggtcggcgac ctcaaggtcc tgcacttcta cccggagcat tcgaacgacc gctggaacca
     5221 ggccgcgctg accgtgcagg gcaagatcgg caacttcgac ctcgtctacg ccttcgccca
     5281 cctgcgccgc gacgtcgatt cgcaggcgga ctacaccgac tacggcttct ggtacgacag
     5341 ctcgccggcc gattacgggc agtatttctg cagcgacttc gacccgaact ccttcagctg
     5401 cgcgccgggc accctgatca acatgtccca gcacatcgac gcgaaggacg gctaccgcaa
     5461 gagcagccat gagctgcgcg tcacctcgca gaaggaggac cggctgcgcc tggtcgccgg
     5521 gctgttctgg cagcggcagg gccacgacat cttccagcgc tatttcatgg acggcctgtc
     5581 ggcggtgcag gaagtgccgg gctggccgga cacgatctgg ctgacggcgc agcagcgcac
     5641 ggaccgcgac aaggcggtgt tcggcgagct ctccttcgac ctcaccaaat cgctgaccgc
     5701 caccgtcggc gggcgctggt tccacaacga caacagcctc aagggcttct tcggctacgg
     5761 cgactgggga tggagctcga cggccggcgt ggcggcgtgc ttctcggacg agcagttcca
     5821 cggcgctccc tgcgtcgacc tcgacaagga cgtccgcgag agcggccgca tcggccgagc
     5881 caacctcacc tggcagctca ccaacgacaa gctggtgtat gccacctggt cggagggtta
     5941 tcgtcccggc ggcatcaacc gccgcggcac gatcccgccg taccagtccg acttcctcac
     6001 caactacgag ctgggctgga agacgacgtg gggcgacaac gtcctcacct ggaacggcgc
     6061 cgtcttccag gataactgga acaacttcca gttctcctac ctggggcaga acggcctgac
     6121 cgagatccgc aacgcggcac gggcccgcat ccgcggcctg gaaaccgacg tccggtgggc
     6181 ggccacctac aacctcgcgc tcaccgcggc cgcggccttc tacgacgcca agttgaccca
     6241 ggactactgc ggcaagctct cgcccgtcac cggcaaggcg atcaccgatt gcccggtcgg
     6301 cagcacggtc gacggcgtct tcttcccgga cggcgccgaa gcgccggccg gcagccgcct
     6361 gccggtcacc gcccgcttca agggcaacgt caccgcgcgt tacaccttcg acctgtgggg
     6421 cggcgaggcc ttcgggcagg cggccgtgat ccacgaagga tcgcgtcgca ccgaccttcg
     6481 cgcggcggcg gccaacacgc tcggcgacct aaagccctac acgatcaccg acctgtccgc
     6541 cggcttccgc aggaacaact ggtcggtgga cgtgttcctg aagaacgcgt tcaacacgcg
     6601 cgcgcagctc acccgtttca ccgaatgcgc ggtcggcacc tgcggcggcc agccgtacac
     6661 ggtggtggcg cagccgcgca cgttcggagt gcggttctcg caggatttct gagcgtccac
     6721 cgccggctgg aaggaaaacg cccgcgcgag cgggcgtttt ccagtgcgga accgtcgcgg
     6781 cgcggctact tcggcgtgcg caccggcagc ggcacgttgc acaggtcgat gtggcccgcg
     6841 ggcaccttgt accaatcgtc gcggcggttg cggcgcgact ccaccacgtc gcggaacagc
     6901 ggcgtgtcgg tgcgcagcac ctcgagcggg gtgcgctgcg cttcggggag gtcgctggcg
     6961 agcgtgatcg ccttgatcgg cacccgctgc tcggccttct cgtagaagcc gagcggcccg
     7021 gtgccgcggg gcagggtcga cagcagttcc atgccctgca cgacccggcc caccacggtg
     7081 atgttgcggt cgagctggcg cggcgactgc ccatcgacga cgtacagctc gctgccgttg
     7141 ctggaatcgg cggccatgtc gcgcccggcg ccgacggtgc cgtagcagtg cgccagccag
     7201 gcggtgttcg tcccggggtc gcgcgcggcg gcgaaatccc cgctgaagcc cacctgcggt
     7261 gcccatccat ccgcgtccgg cagtcgctcg aaccgcatgc cctgcgcact gcgggtgaat
     7321 tccgccggca ggtgcgcctg cgccgccccg agcggcctgc gcgccttgtc gtcctcggca
     7381 ggatcgcccc actgcacgac gaagttgtcc tgcgagcggt tgatgctgag gccattccag
     7441 tagccctcgt gggccaaggc gcggatgttg gcggcgtgcc gcggcgcgaa gtcgggcgcc
     7501 agttcgatca ccacgcgccc gcccgcgagc tcgaggtaca gcgtgtcggc gggatcgagg
     7561 cggtgccagt ccgacggttt cgatgcatcg agcagctcct gcatcgactt cggtttggcg
     7621 ggcgcggcgg cctgcagggg aagggcggtc gcaagggcga ggacgagcag ggacagcgtc
     7681 gcaggcaggg cagggcgcat cggatgctcc gacgattggg gaaacggaat ggtcaggcgt
     7741 gcagcgcggg cacgcgcacg tagtcgccgc gcatgaactc ggaatactcc gccgcgtcgc
     7801 cgaggcggtt ctcgatcacg aagcgatagc gatcgtcgcc gtcgaactcg aagcggtagc
     7861 gcgcgctgcc gcgcggcgtg tgcttctcga accggagggt gtcgccgtcc cagtggccgc
     7921 gcgcgggttc gggcgggaag ccgaggctgt cgaaccacca ccacagcacg ccgtcgcccc
     7981 c
//
LOCUS       DATIQC010000470         3851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_101044, whole genome shotgun sequence.
ACCESSION   DATIQC010000470 DATIQC010000000
VERSION     DATIQC010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101044"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..502)
                     /gene="tadA"
                     /locus_tag="VLM17_10160"
     CDS             complement(23..502)
                     /gene="tadA"
                     /locus_tag="VLM17_10160"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009602240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HSR65947.1"
                     /translation="MNAPVDDEHWMRHALALADRAQHEDDEIPVGAVLVAAGGEVIGE
                     GWNRNITDRDPSAHAEIVAMRQAGARVGNHRLLGSTLYVTLEPCAMCAMAMVHARIAR
                     VVYAAADPKTGAAGSVFDLLADERHNHRVAVQGGVLAEEAGRCLSNYFRAKRGRPPL"
     gene            complement(516..2084)
                     /gene="guaA"
                     /locus_tag="VLM17_10165"
     CDS             complement(516..2084)
                     /gene="guaA"
                     /locus_tag="VLM17_10165"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HSR65948.1"
                     /translation="MTDLHSDKILILDFGAQYTQLIARRIREIGVYCEIWAWDHDPAE
                     IARYGAKGIILSGGPESTTVEGAPRAPQEVFDSGLPVLGICYGMQTLAAQLGGSTEAA
                     DQREFGHATVELVAQDALLDGLKDHPGSPPKLDVWMSHGDHVAAAPPGFVVTARTDRI
                     PVAAMANEDKRWYGVQFHPEVTHTKSGQALLRRFVVDICGCRTLWTAEHIIEDQIARV
                     RAQVGGDEVILGLSGGVDSSVVAALLHKAIGDQLTCVFVDTGLLRWQEGDQVMAMFAE
                     HMGVKVVRVNARDRYFKALEGVGDPEAKRKIIGNLFVEIFDEESHKLTNAKWLAQGTI
                     YPDVIESAGSKTGKAHVIKSHHNVGGLPEDMKLGLVEPLRELFKDEVRRLGVELGLPP
                     HMVYRHPFPGPGLGVRILGEVKPEYAELLAQADAIFIDELRKAGLYDKVSQAFAVFLP
                     VKSVGVVGDARAYEWVIALRAVETIDFMTAHWAHLPYEFLGRVSNRIINELRGVSRVV
                     YDISGKPPATIEWE"
     gene            complement(2198..3658)
                     /gene="guaB"
                     /locus_tag="VLM17_10170"
     CDS             complement(2198..3658)
                     /gene="guaB"
                     /locus_tag="VLM17_10170"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HSR65949.1"
                     /translation="MLRIQAEALTYDDVSLVPAHSVVLPKDVSLATRLTRNLRLNLPI
                     VAAAMDTVTEARLAVAMAQLGGIGILHKNMSIERQAAEVARVKKFEAGVIKEPFTVGP
                     ETTIGEVLKLTRARNISGVPVVDEGGQLVGIVTGRDMRFEKKLDDPVRHIMTKKDRLV
                     TVKEGASDDEVIQLLHKHRIEKVLVVNDEFALRGLITVKDIQKKSDNPNAAYDSSERL
                     LVGAAVGVGGDTEQRIEALVAAGVDVIVVDTAHGHSQGVLDRVGWAKKRFPKLEVVGG
                     NIVTGDAARALEDAGADAVKVGVGPGSICTTRIVAGVGVPQVTAVSMVAEALADRIPL
                     IADGGIRYSGDIGKAIVAGASVVMIGGLFAGTEESPGETELFQGRSYKSYRGMGSLGA
                     MEKGSKDRYFQDASDADKLVPEGIEGRVPYRGPLSGVVHQLAGGLRATMGYVGCATIE
                     EMRSKPSFVKVTTAGTRESHVHDVQITKEPPNYRAG"
     gene            complement(3758..>3851)
                     /locus_tag="VLM17_10175"
     CDS             complement(3758..>3851)
                     /locus_tag="VLM17_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="HSR65950.1"
                     /translation="ITPVPGGVGPMTVATLMQNTLEAAEAADPA"
BASE COUNT          532 a         1368 c         1313 g          638 t
ORIGIN      
        1 cgccacgagg cctagcaccg gttcagagcg gcggcctgcc ccgcttggcg cggaagtagt
       61 tgctcaggca acgcccggcc tcctccgcca gcaccccgcc ctgcaccgcc acgcggtggt
      121 tgtggcgctc gtcggcgagc aggtcgaata cgctgcccgc cgcgccggtc ttgggatcgg
      181 cggccgcgta gaccacgcgt gcgatgcgcg catgcaccat ggccatcgcg cacatcgcgc
      241 agggctccag cgtcacgtag agcgtactgc cgagcaggcg gtggttgccg acgcgcgcgc
      301 cggcctggcg catcgcgacg atctcggcgt gcgcgctggg atcgcggtcg gtgatgttgc
      361 ggttccagcc ctcgccgatc acctcgccgc cggcggcgac caggaccgcg ccgacgggga
      421 tctcgtcgtc ctcgtgctgt gcgcggtcgg cgagcgccaa tgcgtggcgc atccagtgct
      481 cgtcgtcgac gggcgcgttc atgcgcggaa ccgtcctact cccactcgat cgtcgccggc
      541 ggcttgccgc tgatgtcgta gacgacgcgc gagacgccgc gcagctcgtt gatgatgcgg
      601 ttggataccc ggccgaggaa ctcgtacggc aggtgcgccc aatgcgcggt catgaagtcg
      661 atggtctcga ccgcccgcag cgcgatcacc cattcgtagg cacgcgcgtc gccgaccacg
      721 ccgaccgact tcaccggcag gaacaccgcg aaggcctggc tgaccttgtc gtacaggccg
      781 gccttgcgca gttcgtcgat gaagatcgca tccgcctgcg ccagcagctc ggcatattcc
      841 ggcttcactt cgccgaggat gcgcacgccc aggccggggc cggggaaggg gtgccggtag
      901 accatgtgcg gcggcaggcc gagttcgacg cccaggcgcc gcacctcgtc cttgaacagc
      961 tcgcgcagcg gttcgaccag gccgagcttc atgtcctcgg gcaggccgcc gacgttgtgg
     1021 tggctcttga tgacgtgcgc cttgccggtc ttgctgccgg ccgattcgat cacgtccggg
     1081 tagatcgtgc cctgggcgag ccacttcgcg ttggtgagct tgtgcgactc ctcgtcgaag
     1141 atctcgacga acaggttgcc gatgatcttg cgcttggcct ccgggtcgcc gaccccttcc
     1201 agcgccttga agtagcggtc gcgcgcgttg acgcggacga ccttgacgcc catgtgctcg
     1261 gcgaacatcg ccatcacctg gtcgccttcc tgccagcgca gcaggccggt gtcgacgaac
     1321 acgcacgtca gctggtcgcc gatcgccttg tgcagcagcg cggcgacgac cgaggagtcg
     1381 acgccgcccg acaggccgag gatcacctcg tcgccgccga cctgcgcgcg cacgcgcgcg
     1441 atctggtcct cgatgatgtg ctcggcggtc cacagcgtcc ggcagccgca gatgtcgacc
     1501 acgaagcggc gcagcagcgc ctgcccggac ttggtgtggg tcacttccgg atggaattgc
     1561 acgccgtacc agcgcttgtc ctcgttggcc atcgccgcga ccgggatgcg gtcggtgcgc
     1621 gcggtgacga cgaagcccgg cggcgcggcg gcgacgtggt cgccatggct catccagacg
     1681 tcgagcttcg gcggcgaacc cggatggtcc ttgaggccgt cgagcagcgc gtcctgcgcg
     1741 accagctcga cggtcgcgtg gccgaactcg cgctggtcgg cggcttcggt ggacccgccc
     1801 agctgcgcgg ccagcgtctg catgccgtag cagatgccga ggaccggcag gccggagtcg
     1861 aagacttcct gcggcgcgcg cggcgcgcct tccacggtgg tcgactccgg gccgccggag
     1921 aggatgatgc ccttcgcgcc gtacctggcg atctccgcgg ggtcgtggtc ccacgcccag
     1981 atctcgcaat acacgccgat ctcgcggatg cgccgcgcga tcagctgcgt gtactgcgcg
     2041 ccgaagtcga ggatgaggat cttgtcgctg tgcaggtcgg tcatggaagg ccgttcatgg
     2101 ttcgacaggc tcaccacgaa cggtcgtcat gcaccgtcgc gaaaaacgat aaaccgttcg
     2161 ccctgagcct gccgaagggc ggacggcgcg gcgggcctca gcccgcccgg tagttcggcg
     2221 gttccttggt gatctgcacg tcgtgcacgt ggctctcgcg cgtgcccgcg gtcgtgacct
     2281 tcacgaacga aggcttgctg cgcatttcct cgatggtcgc gcagccgacg tagcccatcg
     2341 tggcgcgcag gccgccggcg agctggtgca ccacgccgct caggggcccg cggtacggca
     2401 cccggccctc gatgccctcc ggcaccagct tgtcggcgtc ggacgcgtcc tggaagtagc
     2461 ggtccttcga gcccttctcc atcgcgccga gcgagcccat gccgcggtag ctcttgtagc
     2521 tgcggccctg gaacagctcg gtctcccccg gcgactcctc ggtgccggcg aacaggccgc
     2581 cgatcatcac cacgctcgcg ccggcgacga tggccttgcc gatgtcgccc gaatagcgga
     2641 tgccgccgtc ggcgatcagc gggatgcgat cggccagcgc ctcggcgacc atcgacaccg
     2701 cggtgacctg cggcacgccg acgcccgcca cgatccgcgt ggtgcagatc gagccggggc
     2761 cgacgcccac cttgaccgcg tccgcgcctg catcttccag cgcgcgcgcc gcgtcgccgg
     2821 tgacgatgtt gccgcccacc acctcgagct tcgggaaacg cttcttcgcc cagccgacgc
     2881 ggtccagcac gccctgcgag tggccgtgcg ctgtgtcgac cacgatgacg tcgacgcccg
     2941 ccgcgaccag cgcctcgatg cgctgctcgg tgtcgccgcc gacgccgacc gcggcaccga
     3001 cgagcaggcg ttcgctgctg tcgtaggcgg cgttcgggtt gtcggacttc ttctggatgt
     3061 ccttgacggt gatcaggccg cgcagcgcga actcgtcgtt caccaccagc accttctcga
     3121 tgcggtgctt gtgcagcagc tggatgacct cgtcgtcgct ggcgccctcc ttcaccgtga
     3181 ccaggcggtc cttcttggtc atgatgtggc ggaccgggtc gtcgagcttc ttctcgaagc
     3241 gcatgtcgcg cccggtgacg attccgacga gctggccgcc ctcgtccacc accggcacgc
     3301 cggagatgtt gcgcgcgcgg gtgagcttga ggacctcgcc gatcgtcgtc tcggggccga
     3361 cggtgaacgg ctccttgatc acgccggcct cgaacttctt cacccgcgcc acttccgccg
     3421 cctggcgctc gatcgacatg ttcttgtgca ggatgccgat gccgcccagc tgcgccatcg
     3481 cgacggccag gcgcgcctcg gtcaccgtgt ccatcgccgc ggcgacgatg ggcaggttca
     3541 ggcgcaggtt gcgggtcagg cgggtggcga gcgaaacgtc cttgggcagg acgaccgaat
     3601 gcgcggggac gagcgaaacg tcgtcgtagg tcagcgcttc agcctggatg cggagcatgg
     3661 gcaaccccgg tgggatgaag cgcgtcattg taacccgggc tggcgtcccg gcgctcgccc
     3721 acggggcacg aagcgttccg cgctcaggcc cggccgatca ggcgggatcc gccgcctctg
     3781 ccgcctccag cgtgttctgc atcagcgtgg ccacggtcat cggcccgacg ccgcccggca
     3841 ccggcgtgat c
//
LOCUS       DATIQC010000471         5191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_277950, whole genome shotgun sequence.
ACCESSION   DATIQC010000471 DATIQC010000000
VERSION     DATIQC010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5191
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277950"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VLM17_10180"
     CDS             complement(<1..197)
                     /locus_tag="VLM17_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65951.1"
                     /translation="MSNIGTDDAPGRRPAGSDFRTPLARARGLGSGKTGTAHWWAQRM
                     TAVLLALLAPWLVGLLVSFVG"
     gene            complement(194..586)
                     /gene="sdhC"
                     /locus_tag="VLM17_10185"
     CDS             complement(194..586)
                     /gene="sdhC"
                     /locus_tag="VLM17_10185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019300223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HSR65952.1"
                     /translation="MPTRERPLSPHLQVYRWQITMTMSILHRASGVILAVGAFGLAWW
                     LLALARGGDAFAHAAHVVASPLGLLFLFGFSLSLVYHLLNGIRHLLWDAGWGYDIPDV
                     YRSGWTVAVLTVVFTAAIWFAAFGGHHA"
     gene            complement(638..823)
                     /locus_tag="VLM17_10190"
     CDS             complement(638..823)
                     /locus_tag="VLM17_10190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005409075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1674 domain-containing protein"
                     /protein_id="HSR65953.1"
                     /translation="MNPQMIGQSTPEPAPEQAPVPAQEPAAAAPEAHEALEIGGRAGP
                     DPTRYGDWEKNGRCIDF"
     gene            852..1718
                     /locus_tag="VLM17_10195"
     CDS             852..1718
                     /locus_tag="VLM17_10195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HSR65954.1"
                     /translation="MSDNPQDSRDAFFALGFGVLALSGPDAVKFAHAQFMSDVAALAP
                     GRWQWSGWLTPKGRLVALFAVLKPDAETLWLLLPEGDAADLGDQLRRYVFRSRLEITA
                     RSDLFVAGKAAAPALARGAALAGDASHGVELDFGGEGGPRAVRVASDPAPDDRPALAR
                     WRRFDVEHGLPRLDPSQRGQWTPQMLSLDRLQAFSVKKGCYPGQEIVARTHFLGQAKR
                     GLVLLEADASLAPGTEVGDGGKPLGTIVSVARDADTALALAVLPLEHDATALLAGATT
                     LRERPLLGGLAR"
     gene            complement(1726..3996)
                     /locus_tag="VLM17_10200"
     CDS             complement(1726..3996)
                     /locus_tag="VLM17_10200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HSR65955.1"
                     /translation="MFATVPTPIPARMKGLNRAEICDVNFQEFVRGWAGRAEAKPAPG
                     EAILDGSALDARGFRELFESQLISRHLDLMARVLRVQNKVFYTIGSSGHEGNAMVARL
                     TRHTDPAFLHYRSGGFMAERFRKLPGMDPIMDSALSFAASKDDPASGGRHKVWGSKPL
                     WVLPQTSTIASHLPKALGTAVAIEQARRIGHQLPVPDDSIAICSFGDASSNHATAQTA
                     FNAAAWTAYQKLPAPVLFVCEDNGIGISVKTPEGWVGRNFRDRADLDYFHADGLDLAA
                     GYGQVQAAVEHCRNTRRPTFLHLRTARIMGHAGTDFEIEWRSVEELCAVEATDPLLRS
                     AAIALESGLMSKDEILGLYEETRKKCFAAAEDADSRPRLSSLEEVMAPLAPYHRDKVE
                     AEAARFDYADKRAQVFGGEAKLPEKQAPKHLAIQINQALHDLFAKYPEALLFGEDVAQ
                     KGGVYTVTKGLQKAFKGARVFNTLLDETMILGLAQGYANMGMLPLPEIQYLAYFHNAC
                     DQIRGEAASLQFFSNGQYRNPMVVRIAALGYQRGFGGHFHNDNSITALRDIPGLVVGC
                     PSRGDDAAMMLRTLTALAKVDGRVCAFLEPIALYMAKDLYEAGDGGWLTDYPSPERFM
                     PLGEGRVYGEGDDLVIFTFGNGVPMSLRAARAIEAKHGWKVRVVDLRWLVPLNEAFIR
                     EQARTAKRILIVDEGRRSAGVGEGIITAVVEGGYGARPFKRVVGADTFTPLAGAAFLV
                     IPSDEEIVAAADSLAG"
     gene            complement(4066..4707)
                     /locus_tag="VLM17_10205"
     CDS             complement(4066..4707)
                     /locus_tag="VLM17_10205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005410282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSR65956.1"
                     /translation="MPTVHGFSPSGNCHKVRLLLEQLGQPYRWVETDSTTGATRTPQF
                     LAKNPNGKVPLLELDDGRVLAESNAILCWLAEGTPFLPEDAWQRAQALSWMFFEQYSH
                     EPCIAVARFICGWTPADSPRRADLPKLRERGHQALAVMERHLSSQPWFTGPAYGVADI
                     ALFAYTSVARHGGIALDAYPAVRDWLARIAATPRFVPVPEPDAKARALIDQST"
     gene            complement(4707..>5191)
                     /locus_tag="VLM17_10210"
     CDS             complement(4707..>5191)
                     /locus_tag="VLM17_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR65957.1"
                     /translation="DAYAAMMADEDTARYIGGHMTRTAAWRKFLQMPGAWAMQGFAMF
                     SLEEKASGEWVGQCGPWQPEGWPGTEVGWSLRREFTGQGYALEAAIASIDWAFDTLGW
                     TEVIHSIQYPNQASIRLAERLGSAYLGPGKLPPPYDDIELGLWGQGRDEWRARRAQVA
                     "
BASE COUNT          746 a         1791 c         1863 g          791 t
ORIGIN      
        1 atgccgacga aggacaccag caggccgacc agccacggcg ccagcagcgc cagcagcacg
       61 gcggtcatgc gctgcgccca ccagtgggcg gtcccggtct tgccggagcc gaggccgcgc
      121 gcacgcgcca gcggcgtgcg gaaatcgctg cccgcggggc ggcggcccgg cgcgtcgtcg
      181 gtgccgatgt tgctcatgcg tggtggcctc cgaaagcggc gaaccagatc gcggcggtga
      241 acacgacggt cagcaccgcc accgtccagc cggagcggta cacgtcggga atgtcgtagc
      301 cccagccggc gtcccacagc aggtggcgga tgccgttgag caggtggtag acgagcgaga
      361 gcgagaagcc gaacaggaac agcaggccga gcggcgaggc gacgacgtgt gccgcgtggg
      421 cgaaggcatc gccgccgcgc gccagcgcca gcagccacca cgccaggcca aacgcgccga
      481 ccgccaggat gaccccgctg gcgcgatgca ggatcgacat cgtcatggtg atctgccagc
      541 gatagacctg cagatgcggt gacagcgggc gttcgcgggt gggcatgcgt gtcgtctccg
      601 gcaggcggcg cgggccgcgt ggtcgccgtg tgatggctca gaagtcgatg cagcggccgt
      661 tcttttccca atcgccgtag cgcgtggggt cggggccggc acggccgccg atctcaagcg
      721 cctcgtgcgc ctccggagcg gcggcggccg gttcctgcgc gggaacgggc gcctgctccg
      781 gcgcgggctc gggtgtcgat tgacctatca tctgcgggtt cacagccggt caagtgtacg
      841 tcccgccgcc aatgtcggac aacccgcagg attcccgcga cgcatttttc gccctcggct
      901 tcggcgtgct ggcgctgtcc ggaccggacg ccgtgaagtt cgcgcatgcg cagttcatga
      961 gcgatgtcgc cgccttggca cctggccggt ggcagtggag cggctggctg acgcccaagg
     1021 ggcggctggt cgcgttgttc gcggtgttga agcccgatgc ggagaccctc tggctgttgc
     1081 tgcccgaagg cgacgcggcg gatctgggcg accagctgcg gcgctacgtc ttccgcagca
     1141 ggctggagat cacggcgcgt tccgaccttt tcgtcgcagg caaggccgcg gctcccgccc
     1201 tggctcgcgg cgccgccctg gcgggtgatg ccagccatgg cgtggagctc gacttcggcg
     1261 gcgagggcgg cccgcgcgct gtccgcgtcg cgtccgatcc ggcaccggac gatcgccccg
     1321 ccctcgcccg ctggcggcgc ttcgacgtgg agcacggcct gccgcgcctg gacccctcgc
     1381 aacgcgggca atggaccccg cagatgctct cgctcgatcg gctgcaggcc ttcagcgtga
     1441 agaagggctg ctatcccggc caggaaatcg tcgcgcgcac gcacttcctc ggccaggcga
     1501 agcgcgggct cgtgctgctg gaagcggatg cgtcgctcgc gccgggcacc gaggtcggcg
     1561 atggcgggaa gccgctcggc acgatcgtga gcgtcgcccg cgacgccgat acggcgctcg
     1621 cgctggcggt gctgccactg gagcatgacg cgaccgcgct gctcgcgggc gcgacgacgc
     1681 tgcgcgaacg cccgctcctc ggcgggctcg cgcgctgacc cggtctcaac cggccagcga
     1741 gtccgccgcc gcgacgattt cctcgtccga cggaatcacc aggaaggcgg cgcccgcaag
     1801 cggcgtgaac gtgtcggcgc ccaccacgcg tttgaacggt cgcgcgccat agccgccttc
     1861 gaccaccgcg gtgatgatgc cctcgcccac gccggcgctg cggcggccct cgtcgacgat
     1921 caggatgcgc ttcgcagtcc tcgcctgttc gcggatgaag gcctcgttga gcgggaccag
     1981 ccagcgcagg tcgaccacgc gcaccttcca gccgtgcttc gcttcgatgg cgcgcgcggc
     2041 gcgcaggctc atcggcacgc cattgccgaa ggtgaagatg acgaggtcgt cgccctcgcc
     2101 gtagacgcgg ccttcgccga gcggcatgaa gcgctccggc gacggatagt cggtcaacca
     2161 gccgccatcg cccgcctcgt acaggtcctt ggccatgtac agcgcgatcg gctcgaggaa
     2221 cgcgcacacg cggccgtcga ccttcgcgag cgcggtgagc gtgcgcagca tcatcgccgc
     2281 gtcgtcgccg cgcgacggac agccgaccac caggccgggg atgtcgcgca gcgcggtgat
     2341 cgagttgtcg ttgtggaagt gcccgccgaa gccgcgctgg tagccgagcg cggcgatgcg
     2401 gaccaccatc ggattgcggt actggccgtt gctgaagaac tgcaggctcg ccgcctcgcc
     2461 gcggatctgg tcgcaggcgt tgtggaaata cgcgaggtac tggatctcgg gcagcggcag
     2521 catgcccatg ttcgcgtagc cctgcgccag gccgaggatc atcgtctcgt cgagcagcgt
     2581 gttgaacacg cgtgcaccct tgaaggcctt ctgcaggccc ttggtcacgg tgtagacgcc
     2641 gcccttctgc gccacgtcct cgccgaagag caaggcttcg gggtacttgg cgaacaggtc
     2701 gtgaagcgcc tggttgatct ggatggcgag gtgcttcggc gcctgcttct cgggcagctt
     2761 cgcctcgccg ccgaacacct gcgcacgctt gtcggcgtag tcgaagcgcg cggcctcggc
     2821 ctcgaccttg tcccggtggt agggcgcaag cggcgccatc acctcttcca gcgacgacag
     2881 gcgggggcgg ctgtccgcat cttcggccgc ggcgaagcat ttcttccgcg tctcctcgta
     2941 cagcccgagg atctcgtcct tcgacatcag cccggattcg agtgcgatcg ccgccgaacg
     3001 cagcagcgga tcggtcgctt cgaccgcgca cagctcctcg accgagcgcc actcgatctc
     3061 gaagtcggtg ccggcatggc ccatgatgcg ggcggtgcgc aggtggagga aggtcgggcg
     3121 tcgggtgttg cggcagtgct cgaccgccgc ctgcacctgg ccgtagcccg cggcgagatc
     3181 gaggccgtcg gcatggaagt aatcgaggtc ggcgcggtcg cggaagttgc gccccaccca
     3241 gccctccggc gtcttgaccg agatgccgat cccgttgtcc tcgcacacga acagcacggg
     3301 cgccggcagc ttctggtacg ccgtccacgc cgccgcgttg aacgcggtct gggcggtggc
     3361 gtggttgctg gaggcatcgc cgaacgagca gatggcgatg ctgtcgtcgg gaaccggcag
     3421 ctggtggccg atgcgcctgg cctgctcgat cgcgacggcg gtgccgagcg ccttgggcag
     3481 gtgcgaggcg atcgtcgagg tctgcggcag gacccacaag ggcttgctgc cccacacctt
     3541 gtggcgcccg ccgctggcgg gatcatcctt cgacgccgcg aacgacagcg ccgaatccat
     3601 gatgggatcc atgcccggca gcttgcggaa gcgctcggcc atgaagccgc cggagcggta
     3661 gtgcaggaac gccggatcgg tgtggcgcgt gagccgcgcg accatcgcgt tgccttcgtg
     3721 gccgctcgaa ccgatggtgt agaagacctt gttctgcacg cgcagcacgc gcgccatcag
     3781 gtcgaggtgg cggctgatca gctgcgattc gaacagttcg cggaacccgc gcgcgtcgag
     3841 cgcgctgccg tcgaggatgg cctcgcccgg cgccggcttc gcctccgccc tgcccgccca
     3901 gccgcgcacg aactcctgga agttgacgtc gcagatctcg gcgcggttga ggcccttcat
     3961 gcgggccggg atgggggtgg gaacggtggc gaacatggcg gtgccttctc ggggcggggt
     4021 ttcgacccgc cggcgtcctg gattgtcgaa aggccggggg cggccctacg tggattggtc
     4081 gatcagcgcc cgcgccttcg cgtccggttc cggcacggga acgaagcgcg gcgtggccgc
     4141 gatgcgcgcc agccagtcgc ggacggccgg ataggcgtcc agcgcgatgc ccccgtggcg
     4201 cgcgacggag gtgtaggcga acagcgcgat gtcggcgacg ccgtacgccg ggccggtgaa
     4261 ccacggctgc gaggacaggt gccgctccat cacggccagc gcctggtggc cgcgctcgcg
     4321 cagcttcggc aggtccgcgc ggcgcggcga atcggccggc gtccagccgc agatgaagcg
     4381 ggcgaccgcg atgcacggct cgtggctgta ctgttcgaag aacatccagc tcagtgcctg
     4441 cgcgcgctgc caggcatctt ccggcaggaa cggcgtgcct tctgcgagcc agcacaggat
     4501 cgcgttcgac tcggcaagca cgcggccatc gtccagctcg agcagcggca ccttgccgtt
     4561 cggattcttc gccaggaact gcggggtgcg cgtggcgccg gtggtgctgt cggtttccac
     4621 ccagcgatac ggctgcccca gttgctccag cagcaggcgc accttgtggc agttgccgga
     4681 gggggaaaag ccgtggacgg tcggcatcac gcgacctgcg cccgccgcgc gcgccattca
     4741 tcgcgcccct ggccccacag gccgagttcg atgtcgtcgt agggtggcgg cagcttgccc
     4801 gggccgaggt aggccgagcc gagccgctcg gccagccgga tcgaagcctg gttcgggtac
     4861 tggatgctgt ggatcacctc ggtccagccg agcgtgtcga aggcccagtc gatcgaggcg
     4921 atcgccgcct ccagcgcgta gccctggcca gtgaactcgc gtcgaagcga ccagccgacc
     4981 tcggtgcccg gccagccctc gggctgccac gggccgcact ggccgaccca ctcgccgctc
     5041 gccttttcct ccagcgagaa catcgcgaag ccctgcatcg cccacgcgcc gggcatctgc
     5101 aggaacttgc gccacgccgc ggtgcgggtc atgtgcccgc cgatgtaacg cgcggtgtcc
     5161 tcgtcggcca tcatcgccgc gtaggcgtcg a
//
LOCUS       DATIQC010000472         2000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_489718, whole genome shotgun sequence.
ACCESSION   DATIQC010000472 DATIQC010000000
VERSION     DATIQC010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489718"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..1151
                     /locus_tag="VLM17_10215"
     CDS             294..1151
                     /locus_tag="VLM17_10215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA4780 family RIO1-like protein kinase"
                     /protein_id="HSR65958.1"
                     /translation="MKTPPALQALIDDGVIDEVLRPLKSGKEAAVYVVRSGDDVRCAK
                     VYKDMAQRSFQQRVQYQEGRKVRGSREARAIGKATKYGRRQQEAAWKNTEVDALYQLR
                     DAGVRVPQPHGYFHGVLVMELVTDADGFSAPRLGEVELTADEARAYHAVLVRQVVRML
                     CCGLIHGDLSAYNVLVGPDGPVVIDFPQVVSAGGNNAARAMLLRDVNNLTASLGRWAP
                     ELLDTWYGEEMWALFEAGALQPETELTGTFEPDEHAVDLDSVRDAINEARAEALIRQQ
                     GREAAEAEA"
     gene            1309..1815
                     /locus_tag="VLM17_10220"
     CDS             1309..1815
                     /locus_tag="VLM17_10220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65959.1"
                     /translation="MTAALAACNKSGPAATTTAPADAPAASASAAPAPEAVATDAPAA
                     DDTAPVSLDMGKVKAWVQAQKNLAALEKADPALDSAQNISEENTTQYVARLEANAKIR
                     AAIESAGLSVRDYARIGDTLIGAMMAQGAVEAGQLKKIPDGIDPAAVDFVKQHKAEIG
                     ALMGPGAG"
BASE COUNT          314 a          704 c          706 g          276 t
ORIGIN      
        1 gtcgccgctg cagaggacgc gaccccgcga tgggtttgca cagccaagcc aacgccgggg
       61 gtcgcgcttc gcggccatcc atccgatcgg cggaaaatcg ctgtttcgct ccccattcat
      121 tcggccgcgc gacacccgcc cggtgtcccg ccgctatccc gggtcgtctg gccctcgacg
      181 ttgcatgaac gcctcggcac cgcctcgttc aggccgcggt ttcgccgtgg cggaggtggt
      241 gagacactgc ccgcccttcg cgccggccct gccggcgctt ttcgcgagaa tccgtgaaga
      301 ctcccccggc tttgcaggcg ctgatcgacg acggcgtcat cgacgaggtg ctgcgtccgc
      361 tcaagagcgg caaggaagcg gcggtgtacg tcgtgcgcag cggcgacgac gtgcgctgcg
      421 cgaaggtcta caaggacatg gcgcagcgca gcttccagca gcgcgtgcag taccaggaag
      481 gccgcaaggt gcgcggcagc cgcgaggcgc gcgcgatcgg caaggcgacg aagtacggcc
      541 gcaggcagca ggaagccgcc tggaagaaca ccgaggtcga cgcgctgtac cagctgcgcg
      601 acgccggcgt gcgcgtgccg cagccgcacg gttatttcca tggcgtgctg gtgatggagc
      661 tggtgaccga cgccgacggc ttctccgcgc cgcgcctggg cgaggtcgaa ctcaccgccg
      721 acgaggcccg cgcgtatcac gccgtgctgg tgcgccaggt cgtgcgcatg ctgtgctgcg
      781 gcctgatcca cggcgacctg tcggcgtaca acgtgctggt cgggccggac ggcccggtgg
      841 tgatcgactt cccgcaggtg gtcagcgcgg gcggcaacaa cgccgcgcgc gcgatgctgc
      901 tgcgtgacgt caacaacctc accgccagcc tcggccgctg ggcgccggag ctgctcgaca
      961 cctggtacgg cgaggagatg tgggcgctgt tcgaggccgg tgcgctgcag ccggaaaccg
     1021 agctcaccgg caccttcgag cccgacgagc acgccgtcga tctcgacagc gtgcgcgatg
     1081 cgatcaacga ggcgcgcgcc gaggcgctga tccgccagca ggggcgcgag gccgcggaag
     1141 ccgaggcctg atccctgcat cgtcggaccg gaactgcggc gccacggatc accctcgagg
     1201 cttccccacg ggcccgcgca ggctcgccgc atgcggcatg atgtcggtcc gttcactgca
     1261 aggagtgccc gaatgacccc gatcctgcgc gcagccgcct gcctgctcat gaccgccgcg
     1321 ctcgcggcct gcaacaagtc cgggcccgcc gcgacgacga cggcaccggc ggatgcgccg
     1381 gcagcgtcgg cctcggctgc gcctgcaccg gaggcagtgg cgacggacgc gccggccgcc
     1441 gacgacacgg cgcccgtgtc gctcgacatg ggcaaggtca aggcctgggt gcaggcgcag
     1501 aagaaccttg cggcgctgga gaaggcggat cccgccctcg attcggcgca gaacatctcc
     1561 gaggaaaaca ccacgcagta cgtggcgcgc ctcgaagcca acgcgaaaat ccgcgcggcg
     1621 atcgagtcgg ccggcctgtc cgttcgcgac tacgcccgca tcggcgacac gctgatcggc
     1681 gcgatgatgg cgcagggcgc ggtggaagcc ggccagctga agaagatccc cgatggcatc
     1741 gacccggcgg ccgtcgactt cgtgaagcag cacaaggccg agatcggcgc cttgatgggc
     1801 ccgggcgccg gctgagcccg cgccgtccgc tgcatgaaaa aaaaccgtgc ggcgcgtggg
     1861 cgccgcacgg tccggaaacg cgcgatgcgc gcggcgtcct agcgccgggt gtccttccgg
     1921 tccttccgat cgttgagctc ggcgatcatg cgctcggcct tgcccgcatg cttctcgaca
     1981 gtgcccgcga cctgctgcga
//
LOCUS       DATIQC010000473         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_454069, whole genome shotgun sequence.
ACCESSION   DATIQC010000473 DATIQC010000000
VERSION     DATIQC010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454069"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..351)
                     /locus_tag="VLM17_10225"
     CDS             complement(<1..351)
                     /locus_tag="VLM17_10225"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HSR65960.1"
                     /translation="MTTLFISDLHLDPERPAITEAFGRFVDGEARAADALYILGDLFE
                     AWVGDDDPSETGRFVAEKLAALRAAGVPVYFQHGNRDFLLGEDYARRAGMTILPDPAV
                     ILLQGRPTLLMHGDL"
     gene            503..1909
                     /gene="gltX"
                     /locus_tag="VLM17_10230"
     CDS             503..1909
                     /gene="gltX"
                     /locus_tag="VLM17_10230"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003472954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HSR65961.1"
                     /translation="MACRTRFAPSPTGYLHIGGARTALYCWLEARRRGGEFILRIEDT
                     DRERSTQAAIDAILEAMGWLGLDYDEGPIYQTARLDRYREVAEQMVAAGTAYYAYETK
                     EELEAMREAAMAKGDKPRYSGAARDAGLPHRDDPNRVIRFRNPSDGTVAWDDKVKGRI
                     EIANSELDDLVIFRSDGYPTYNFAVVVDDIDMRITDVVRGDDHVNNTPRQINIYRALG
                     AEVPHFAHLPMILDEHGAKLSKRTGAADVMQYREMGYLPHALLNYLVRLGWSHGDQEV
                     FSIAEMQALFDLKDVNAKAARMDPAKLGWLNQQYLKGDAPEDVAKHLDWHLRQQGFDL
                     VHGPKAADLVVALRDRVQTLNEMAARSAIWFHPLREYDDKAVAKHLTAAAQAPLADAR
                     ERLAALGEWSVETVSLALHATAEALGLGMGKVAQPLRVAITGTQVSPDIGHTVYLAGR
                     DEALRRIDAALAMIPAGG"
     gene            1911..2420
                     /locus_tag="VLM17_10235"
     CDS             1911..2420
                     /locus_tag="VLM17_10235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HSR65962.1"
                     /translation="MGHPHARDACIDPTHHVHGAKAFVRAVEAACRERGLRLTPIRAR
                     VLGLIAEAGKPLKAYDLLERIAQDSRDGEGVGAAAPPTVYRALDFLLANGFIHKLESV
                     NAFVACHHPSTAQHSVPFLICERCHSAVELEDADVVAALEARARALGFVPQAQTLEVH
                     GLCARCSSR"
BASE COUNT          409 a          911 c          861 g          346 t
ORIGIN      
        1 caggtcgccg tgcatcagca gcgtcggcct gccctgcagg aggatgaccg ctggatcggg
       61 caggatggtc atgccggcgc ggcgggcgta gtcctcgccg agcaggaaat cgcggttgcc
      121 gtgctggaag tacacgggaa cgcccgccgc gcgcagcgcc gcgagcttct cggccacgaa
      181 ccgaccggtc tccgagggat cgtcgtcgcc gacccaggcc tcgaacaggt cgcccaggat
      241 gtacagcgcg tccgccgcgc gcgcctcgcc atcgacgaag cgaccgaagg cctcggtgat
      301 ggcggggcgc tcggggtcga ggtgcaggtc cgagatgaac agcgtggtca tcggcgcatt
      361 gtacgagcgg catcgcgaca ttccccgtcg cgagcggttt accggcctgt ccggccgtgc
      421 cgatgcgact ctctacggat ggcgggctcg cggcacgagc cgctcccgta aaatacccgc
      481 ttcttccgga tatccgcccc gcatggcctg ccgcacccga ttcgccccca gtcccaccgg
      541 ctacctgcac atcggtggcg cccgcacggc gctgtactgc tggctggagg cgcgtcgccg
      601 cggcggcgag ttcatcctgc gcatcgagga caccgaccgc gagcgcagca cgcaggcggc
      661 gatcgacgcg atcctcgagg cgatgggctg gctgggcctg gactacgacg aaggcccgat
      721 ctaccagacc gcgcgcctgg accgctaccg cgaggtcgcc gagcagatgg tcgcggccgg
      781 cacggcgtat tacgcctacg agacgaagga ggagctcgag gcgatgcgcg aggccgccat
      841 ggccaagggc gacaagccgc gctacagcgg cgccgcgcgc gacgccgggc tgccgcaccg
      901 cgacgatccc aatcgcgtca tccgcttccg caacccgagc gacggtaccg tcgcctggga
      961 cgacaaggtc aagggccgca tcgagatcgc gaacagcgaa ctcgacgacc tggtgatctt
     1021 ccgctccgac ggctacccga cctacaactt cgcggtcgtc gtcgacgaca tcgacatgcg
     1081 catcaccgac gtggtgcgcg gcgacgacca cgtcaacaac acgccgcggc agatcaacat
     1141 ctaccgtgcg ctcggcgccg aagtgccgca tttcgcgcac ctgccgatga tcctcgacga
     1201 gcacggcgcc aagctgtcca agcgcaccgg cgcggccgac gtcatgcagt accgcgagat
     1261 gggctacctg ccgcacgcgc tgctgaacta cctggtgcgg ctgggctggt cgcacggcga
     1321 ccaggaagtg ttttcgatcg ccgaaatgca ggcgctgttc gacctcaagg acgtgaacgc
     1381 gaaggccgcg cgcatggatc cggccaagct cggctggctc aaccagcagt acctgaaggg
     1441 cgatgcgccc gaggacgtcg cgaagcacct cgactggcac ctgcgccagc agggtttcga
     1501 cctcgtgcac ggaccgaagg cggccgacct cgtggtggcg ctgcgcgacc gcgtgcagac
     1561 gctcaacgag atggccgcgc gttcggcgat ctggttccat ccgctccgcg aatacgacga
     1621 caaggccgtc gccaagcacc tcaccgccgc cgcgcaggcg ccgctcgccg atgcacgcga
     1681 acgcctcgcg gcgcttggcg agtggagcgt cgagacggtg agcctcgcgc tgcacgccac
     1741 cgccgaagcg ctcggcctcg gcatgggcaa ggtcgcgcag ccgctgcgcg tcgccatcac
     1801 cggcacccag gtcagccccg acatcggcca caccgtctac ctcgccgggc gcgacgaggc
     1861 gctgcgccgc atcgacgcgg cgctggcgat gattcccgcc ggaggctgag atgggacacc
     1921 cgcacgcacg cgacgcctgc atcgacccca cgcaccacgt gcacggggcg aaggcgttcg
     1981 tgcgcgcggt cgaggccgcg tgccgcgaac gcgggctgcg gctgaccccg atccgcgcgc
     2041 gcgtgctcgg cctgatcgcc gaggccggca agccgctgaa ggcctacgac ctgctcgaac
     2101 gcatcgccca ggacagccgc gacggcgagg gcgtcggcgc cgcggcgccg ccgacggtgt
     2161 accgcgcgct cgacttcctg ctcgccaacg gcttcatcca caagctcgaa tcggtgaacg
     2221 ccttcgtcgc ctgccatcac ccgagcacgg cgcagcattc ggtgccgttc ctgatctgcg
     2281 agcgctgcca ttcggcggtc gagctcgagg acgcggacgt ggtggcggcg ctggaggcga
     2341 gggcgcgcgc gctcggcttc gtgccgcagg cgcagacgct ggaagtgcac gggctgtgcg
     2401 cgcgctgcag ttcccgctga gcccgaccgg cggctgaccg ccgcatgtga tccggtgccc
     2461 cgttcggcgc ccgtaggccg atggtcatat tgaccccctc tccggcgcga gtgttacgtt
     2521 ataacct
//
LOCUS       DATIQC010000474         2089 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_595984, whole genome shotgun sequence.
ACCESSION   DATIQC010000474 DATIQC010000000
VERSION     DATIQC010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595984"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VLM17_10240"
     CDS             <1..652
                     /locus_tag="VLM17_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003473238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c-type biogenesis CcmF C-terminal
                     domain-containing protein"
                     /protein_id="HSR65963.1"
                     /translation="MLAPWLGLALAVGVVVFFLAPQGPWKVAAGVAGAAWVLGGTLRF
                     VWTRFRATGSRFTAEMLGMTFAHLGIAVFLVGALLVEGLSQQRELAVAPGQQVELGHY
                     AFRFDGVARREGPNYVADSGTVTVFRDDAPLAVLRPEKRLYAGGGQVMTEAAIRPGFS
                     RDLYVALGEPLGNGSWAVRVHVKPFVRWIWSGALLMALGGFVTATDRRFRRTEAGA"
     gene            649..1206
                     /locus_tag="VLM17_10245"
     CDS             649..1206
                     /locus_tag="VLM17_10245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HSR65964.1"
                     /translation="MTRRSRAARWLPLAVFGALAVLLAAGVWLSRNPDRAALPSPLIG
                     KPAPQFALPVLHEPTRIVHLADLGGAPFVLNVWGSWCPSCREEHPVLTRFAETRRVRV
                     VGYDWKDEREDALRWLDQFGNPYWLVLSDEDSRYALDWGIYGAPETFLVDARGIVRWK
                     HVGPLTDAVIADELVPELAKAEGSR"
     gene            1206..1640
                     /locus_tag="VLM17_10250"
     CDS             1206..1640
                     /locus_tag="VLM17_10250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HSR65965.1"
                     /translation="MARLLAACLALAPLLAAAEPVSDPAPLQFQSRAEEQHFRALVTE
                     LRCVMCQNQSLADSNAMVAHDLRREVLDLMRQGKSDAQIEDYLVARYGEFVLYKPRVE
                     ERTWLLWFGPAALLLAGGLVVAFVVRRHAGDQPVAEDDGQEW"
     gene            1640..>2089
                     /locus_tag="VLM17_10255"
     CDS             1640..>2089
                     /locus_tag="VLM17_10255"
                     /inference="COORDINATES: protein motif:HMM:NF024820.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HSR65966.1"
                     /translation="MTAAFLFGAALLLVFVLALVLRPLWRDMRGVAAALCVSVACSAA
                     ALYLLVGTPAALDPAARAAPATLSDAIGRLEAQLRQAPTDAEGWRLLGRAYLSARQPA
                     QARGAFARAAVLAPDDPDVLAEAAEASALADPQRRFDPRAVAWLVHAL"
BASE COUNT          226 a          738 c          801 g          324 t
ORIGIN      
        1 gatgctggcg ccgtggctcg gcctcgcgct cgccgtcggc gtcgtcgtgt tcttcctcgc
       61 gccgcagggt ccgtggaagg tcgccgcggg cgtcgccggc gcggcgtggg tgctgggcgg
      121 cacgctgcgc ttcgtgtgga cgcgcttcag ggcgaccggt tcgcgcttca ccgccgagat
      181 gctgggcatg accttcgccc acctgggcat cgcggtgttc ctggtcgggg ccctgctggt
      241 cgagggcctg agccagcagc gcgagctcgc ggtggcgccg ggccagcagg tcgaactcgg
      301 ccattacgcg ttccgcttcg acggcgtggc gcgccgcgaa ggccccaact acgtcgccga
      361 cagcggcacc gtcaccgtgt tccgcgacga tgcgccactc gccgtgctgc gtccggagaa
      421 gcgcctctac gccggcggcg ggcaggtgat gaccgaagcg gcgatccggc cgggcttctc
      481 gcgcgacctc tatgtcgcgc tcggcgaacc gctcggcaac ggcagctggg cggtgcgggt
      541 gcacgtcaag ccgttcgtgc gctggatctg gtccggcgcg ctgctgatgg cgctcggcgg
      601 cttcgtcacc gcgaccgacc gccgtttccg ccgcacggag gccggcgcat gacccggcga
      661 tccagggcgg cgcgctggct gccgctggcg gtgttcggcg cgctcgccgt gctgctcgcc
      721 gcgggcgtgt ggctcagccg caatcccgac cgcgccgccc tgccctcgcc gctgatcggc
      781 aagccggcgc cgcagttcgc gctgccggtg ctgcacgagc cgacgcgcat cgtgcacctg
      841 gccgacctcg ggggcgcgcc gttcgtgctc aacgtgtggg gcagctggtg cccgtcctgc
      901 cgcgaggagc acccggtact gacgcgcttc gccgagacca ggcgcgtgcg cgtggtcggc
      961 tacgactgga aggacgagcg cgaggacgcg ctgcgctggc tggaccagtt cggcaacccg
     1021 tactggctgg tgctcagcga cgaggacagc cgctacgcgc tcgactgggg catctacggc
     1081 gcgccggaaa ccttcctcgt cgatgccagg ggcatcgtgc gctggaagca tgtcgggccg
     1141 ctgaccgacg cggttatcgc cgacgagctg gtgccggagc tggcgaaggc ggagggttcg
     1201 cggtgatcgc gcgcctgctt gccgcctgcc tggcgctggc gccgctgctc gccgccgccg
     1261 agccggtgtc cgaccccgcg ccgctgcagt tccagagccg cgccgaggaa cagcatttcc
     1321 gcgcgctggt caccgaactg cgctgcgtga tgtgccagaa ccagtcgctc gccgactcca
     1381 acgcgatggt cgcgcacgac ctgcgccgcg aggtgctgga cctgatgcga cagggcaagt
     1441 cggacgcgca gatcgaggac tacctggtcg cgcgctatgg ggagttcgtg ctgtacaagc
     1501 cgcgggtcga ggaacggacc tggctgctgt ggttcgggcc ggcggccctg ttgctggccg
     1561 gcggcctggt ggtggcgttc gtggtgcgcc ggcacgcggg cgaccagccg gtggccgaag
     1621 acgacggaca ggagtggtga tgaccgcggc attccttttc ggggcggcgc tgctgctcgt
     1681 gttcgtgctg gcgctggtgc tgcgcccgct gtggcgcgac atgcgcgggg tggcggcggc
     1741 gctgtgcgtc agcgtcgcct gctcggcggc cgcgctgtac ctgctggtcg gcacgccggc
     1801 cgcgctggat cccgccgcgc gcgccgcgcc cgcgacgctg tccgatgcca tcggacgcct
     1861 cgaggcgcag ttgcggcagg cgccgaccga cgccgagggt tggcgcctgc tcggccgcgc
     1921 ctacctgtcg gcacggcagc cggcgcaggc gcggggcgcg ttcgcgcgcg ccgcggtgct
     1981 ggcgccggac gatcccgacg tgcttgccga ggcggccgaa gcgagcgcgc tcgccgatcc
     2041 gcagcgccgc ttcgatccgc gcgcggtcgc ctggctcgtg catgcgctc
//
LOCUS       DATIQC010000475         1727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_454247, whole genome shotgun sequence.
ACCESSION   DATIQC010000475 DATIQC010000000
VERSION     DATIQC010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454247"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..359)
                     /locus_tag="VLM17_10260"
     CDS             complement(<1..359)
                     /locus_tag="VLM17_10260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family peroxiredoxin"
                     /protein_id="HSR65967.1"
                     /translation="MALKRYATAHWEGDLKSGGGRISTPASGLLADTRYGFNTRFGDK
                     KGTNPEELIAAAHAGCFAMALSNALAEAGHAPEAVDARAEVELSLDGAPTISGIRLAV
                     QAKVPGIDPVKFRAVAD"
     gene            632..>1727
                     /locus_tag="VLM17_10265"
     CDS             632..>1727
                     /locus_tag="VLM17_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007513789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HSR65968.1"
                     /translation="MPYTTEQIRNVALAGHPGAGKTTLFEALLHAGGALQTAGTVERG
                     STVSDFDPIEKARGHSIDAAIASTDHGAAGREPIHVNLIDTPGYPDFRGPSLSALAAV
                     ETVAIVVDAGAGVEYGTRRMMDYAKARGLCRVIVVNKIDHAEADPGRVLAQLRDSFGP
                     EVLPLNLPADRGQRVLDCFGGGDGASDVGPVADWHRKIIDQVVEVNETVMDHYLDLGE
                     GGLSGQELHDAFEQCLREGHLVPVCFVSARSGVGVRELLDVAERLFPHPGEANPPPFA
                     KGTGDGAMPVEARPDPGAHVIADVFKIVNDPFVGKLSVFRVFQGTVRRDTQLYIDDGR
                     KAFKVGHLFKLRGKDHVEVEQAIPGDIAAVA"
BASE COUNT          253 a          631 c          604 g          239 t
ORIGIN      
        1 tcatccgcga ccgcgcggaa cttcaccggg tcgatgccgg gcaccttcgc ctgcaccgcc
       61 agccggatgc cgctgatcgt cggcgcgccg tccagcgaca gctcgacctc ggcgcgggcg
      121 tccaccgcct ccggcgcgtg ccccgcttcg gccagtgcgt tcgacaacgc catcgcgaag
      181 cacccggcgt gcgcggcggc gatgagttcc tccgggttgg tgcccttttt gtcgccgaag
      241 cgcgtgttga agccgtagcg ggtgtctgcg agcagtccac tggccggcgt gctgatccgg
      301 cccccgccgg acttgaggtc gccttcccag tgcgcggtgg catagcgctt gagtgccatg
      361 gcggtgctcc ttcgaggggg cgcacagcct acgcgcgccg gcgtcagcag cgcatcacgc
      421 ggccgccgaa gcggcaggct tgacccgccc ggtggcctgc gggacgcttg ccctcccggc
      481 ggcgacgccg gctcccgcca tgaccgcccg ccgagcgcac cgctcggacg gcagcgcttc
      541 cgcagcggac agccatgacg gtatgcgtgt ccctacgcaa gagcccggcc ttccacgggc
      601 cggactcctc acgaacgaca gggaggacgt catgccgtac acgacagaac agatccgcaa
      661 cgtggccctc gcgggccatc ccggcgccgg caaaaccacg ctgttcgaag ccctgctgca
      721 tgccggcggc gccctgcaga cggcaggcac ggtcgaacgc ggcagcaccg tgtccgactt
      781 cgacccgatc gagaaggcgc gcggccactc gatcgacgcg gcgatcgcca gcaccgacca
      841 cggcgcggcc ggccgggagc cgatccacgt caacctgatc gacacgcccg gctaccccga
      901 tttccgcggc ccctcgctgt ccgcgctcgc ggcggtggaa accgtcgcga tcgtcgtcga
      961 tgcgggcgcc ggcgtcgaat acggcacgcg ccggatgatg gactacgcga aggcgcgcgg
     1021 gctgtgccgg gtcatcgtcg tcaacaagat cgaccacgcc gaggccgacc cgggccgcgt
     1081 gctggcgcag ctgcgcgaca gcttcgggcc ggaggtgctg ccgctgaacc tgccggccga
     1141 ccgcggccag cgtgtgctcg actgcttcgg cgggggcgat ggcgcgagcg acgtcggccc
     1201 ggtcgccgac tggcaccgga agatcatcga ccaggtcgtc gaggtcaacg agacggtgat
     1261 ggaccattac ctcgacctcg gcgagggcgg cctctcgggg caggagctgc acgatgcctt
     1321 cgagcagtgc ctgcgcgagg ggcacctggt gccggtgtgc ttcgtctcgg cgcgcagcgg
     1381 cgtcggcgtg cgcgaactgc tcgacgtcgc cgagcgcctg ttcccgcacc cgggcgaggc
     1441 caacccgccc ccgttcgcga aggggacggg cgacggcgcc atgccggtcg aggccaggcc
     1501 cgatcccggg gcgcacgtca tcgccgacgt cttcaagatc gtcaacgacc cgttcgtggg
     1561 caagctcagc gtgttccgcg tgttccaggg cacggtgcgg cgcgacacgc agctgtacat
     1621 cgacgacggc cgcaaggcct tcaaggtcgg ccatctgttc aagctgcgcg gcaaggacca
     1681 cgtcgaggtc gagcaggcga ttcccggcga catcgccgcc gtggcca
//
LOCUS       DATIQC010000476         1996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_313590, whole genome shotgun sequence.
ACCESSION   DATIQC010000476 DATIQC010000000
VERSION     DATIQC010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313590"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..105)
                     /locus_tag="VLM17_10270"
     tRNA            complement(30..105)
                     /locus_tag="VLM17_10270"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(70..72),aa:Phe,seq:gaa)
     gene            247..675
                     /locus_tag="VLM17_10275"
     CDS             247..675
                     /locus_tag="VLM17_10275"
                     /inference="COORDINATES: protein motif:HMM:NF039797.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6491 family protein"
                     /protein_id="HSR65969.1"
                     /translation="MKRWIVLPLLLVLAACATGPNAPERESPRLSLYRAHAGAPVSAF
                     HYFGRFDSWESFGDRTLAVWTRPGEAWLLDLDAPCDGLDFAVAIGLTSHTGLVSARFD
                     DVLVNQPGPHFPCRIQTIRPLDVGAIRAAERAQRAQASGT"
     gene            complement(657..929)
                     /locus_tag="VLM17_10280"
     CDS             complement(657..929)
                     /locus_tag="VLM17_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008268317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HSR65970.1"
                     /translation="MTARSVFCEYEQRETEGLAFVPWPGALGKRVFAHIGKRAWAAWL
                     AHQTMLINENRLSPLDPKHRAFLEGEMEKFLFGGGAEKPAGYVPEA"
     gene            complement(926..1984)
                     /gene="mutY"
                     /locus_tag="VLM17_10285"
     CDS             complement(926..1984)
                     /gene="mutY"
                     /locus_tag="VLM17_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HSR65971.1"
                     /translation="MAAEAADDFAARLLRWFDRCGRHDLPWQHPRTPYRVWVSEVMLQ
                     QTQVGVVMPYFQRWMAALPDLHALAAAPPDDVLALWSGLGYYARARNLHAAARMCVDR
                     HGGELPRDIAALTALPGIGRSTAGAILAQAWGERFPILDGNVRRVLSRLHGIAGWPGL
                     PAVEKQLWRLAEGHLPQERLADYTQAQMDLGATLCTRADPACVVCPLQDGCIARREGR
                     VAELPTPKPGKPLPERDAVVLLFEDAHGRVLLQRRPPAGVWAGLWSLPEAAHAEDARA
                     WFSRHALGDFADGAPLPPVAHAFTHYRLTLQPLRWHGVSFRAQVADNGDLRWVARDAL
                     AALGIPAPIRKLLEARTG"
BASE COUNT          278 a          726 c          712 g          280 t
ORIGIN      
        1 gtgcgggttt cgtaaacgcc tgaaatcact ggtggccggg gagggaatcg aacccccgac
       61 acggggattt tcaatcccct gctctaccaa ctgagctacc cggccatgcg tgaagggcgc
      121 gatgatacgg gcgggcgcct gcgggagcaa gccggatggc cgctgaacgc ggcggcggcg
      181 cgctcgaacg atgcgctgcg gtcgacgcat catcctgtgc cacgccatcc gcgccggagc
      241 cgtgccatga aacgctggat cgtcctgccc ctgctgctcg tgctggccgc ctgcgcgacg
      301 ggccccaatg ccccggagcg cgaaagcccg cgcctttcgc tgtaccgcgc gcatgccggc
      361 gcgccggtgt cggcgttcca ttacttcggc cgcttcgaca gctgggagtc cttcggcgac
      421 cgcacgctgg cggtgtggac gcgcccgggc gaggcctggc tgctcgacct cgatgcgccc
      481 tgcgacggcc tcgacttcgc ggtcgcgatc gggctgacct cgcacaccgg gctggtctcg
      541 gcgcgcttcg acgacgtcct ggtgaaccag ccgggcccgc acttcccgtg ccggatccag
      601 accatccgcc cgctcgacgt cggcgcgatc cgcgcggccg agcgcgccca gcgcgctcag
      661 gcctcgggca cgtagcccgc gggtttctcg gcaccgccgc cgaacaggaa cttctccatc
      721 tcgccttcga ggaaggcgcg gtgcttcgga tccagcggcg acagccggtt ctcgttgatc
      781 agcatggtct ggtgggcgag ccacgccgcc catgcccgct tgccgatgtg cgcgaacacc
      841 cgcttgccga gcgcgccagg ccacggcacg aaggccagcc cttcggtttc gcgttgttcg
      901 tattcgcaga agacgctgcg cgcggtcatc ctgtccttgc ctccagcaac ttgcggattg
      961 gcgccgggat gccgagcgcg gcgagcgcgt cgcgcgccac ccagcgcaag tccccattgt
     1021 cggcgacctg cgcccgaaac gaaacgccgt gccagcgcag cggttgcagc gtgagccggt
     1081 agtgggtgaa ggcgtgcgcg accggcggca gcggcgcgcc gtcggcgaaa tcgcccagcg
     1141 catggcggct gaaccacgcg cgcgcgtctt cggcgtgcgc ggcttcgggc agcgaccaca
     1201 ggccggccca gacgcctgcc gggggccgtc gttgcagcag cacgcggccg tgcgcgtcct
     1261 cgaacagcag caccactgca tcgcgttccg gcaacggctt gcccggtttc ggcgtcggca
     1321 gctcggcgac gcggccttcg cgccgcgcga tgcaaccgtc ctgcagcggg cacaccacgc
     1381 aggccggatc ggcgcgcgtg cagagcgtcg cacccaggtc catctgcgcc tgggtgtagt
     1441 cggcgaggcg ttcctgcggc aggtggcctt ccgcgaggcg ccacagctgc ttctcgaccg
     1501 cgggcagccc cggccagccg gcgatgccgt gcaggcgcga gagcacgcgc ctgacgttgc
     1561 cgtcgaggat cggaaaacgc tcgccccagg cctgggcgag gatcgcgccc gccgtgctgc
     1621 ggccgatgcc gggcagggcg gtgagcgcgg cgatgtcgcg cggcagctcg ccaccatggc
     1681 ggtcgacgca catccgcgcc gccgcgtgca ggttccgggc gcgggcgtag tagcccaggc
     1741 cggaccaaag cgcgaggacg tcgtcgggcg gcgccgcggc gagcgcgtgc aggtcgggca
     1801 gggcggccat ccagcgctgg aaataaggca tcaccacgcc gacctgggtc tgctgcagca
     1861 tcacctccga cacccacacg cggtacggcg tgcgcgggtg ctgccagggc aggtcgtggc
     1921 ggccacagcg gtcgaaccac cgcagcaggc gcgccgcgaa atcgtcggcg gcctcagcgg
     1981 ccatcgctgc cgtccg
//
LOCUS       DATIQC010000477         2797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_30924, whole genome shotgun sequence.
ACCESSION   DATIQC010000477 DATIQC010000000
VERSION     DATIQC010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2797
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30924"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VLM17_10290"
     CDS             complement(<1..429)
                     /locus_tag="VLM17_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HSR65972.1"
                     /translation="MAPAPRLPLRFSKMHGAGNDFVVLDLRDGTPPPNGVLCRRLGDR
                     HTGVGCDQILTVEKPRSDGAVAAYRIWNADGSSAQQCGNGARCIAAWLVRDGAPATGF
                     MLDSPAGSHAVDVLGGGRYRIAMGRPEFAPARIPLQGFAAA"
     gene            complement(434..643)
                     /locus_tag="VLM17_10295"
     CDS             complement(434..643)
                     /locus_tag="VLM17_10295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014089308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HSR65973.1"
                     /translation="MNPKPLAVLLALTLPLAACGNKGPLVRPSSAPLPPAPTSTAPPS
                     DSTAPPAETTTPPADTTTPADAGHG"
     gene            complement(740..>2797)
                     /locus_tag="VLM17_10300"
     CDS             complement(740..>2797)
                     /locus_tag="VLM17_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HSR65974.1"
                     /translation="REDEYYWLRDDTRKNPEMLAYLHAENAYVDAWMAPLRPVEDRLY
                     DEIVGRIKQDDSSVPYRERGWWYYTRFETGQDYPVYARRQGQPDNTPALGSELAGDEQ
                     VLLDVNAMARGKDYFSVGDWEVSPDNRLLAWAEDAVGRRQYTIRIRDLATGEVFADEI
                     HGVAPNLVWADDNRTVFYIENDPDTLLTKRVKKHLLGTPAAADEVVYEEPDDSFYMGI
                     DRSRDDRFLCISVESTVTSELRYAPADDPRAFTVLAPREREVEYQADHLGDRWVIRTN
                     ADGASNFKLVTAPSAASARAQWREWVPHRADVFIDGYELFDGFTAIAERSNGLERLRL
                     LRQPDAGAAAEGAHGDYVQADEPAYSMGLDVNSEPGTDWLRYSYTSMTTPVTTYELNV
                     RTGERRQLKRQPVLGYDPAKYETERLWATARDGTRVPVSLVYARGFRKDGTAALLQYA
                     YGSYGHAMDPAFNLPVVSLLDRGMVYAIAHIRGGQEMGRAWYDDGRLMRKRNTFTDFI
                     DVTDFLVREGYAASDRVAASGGSAGGLLMGAITNMAPEKYRVILSQVPFVDVVTTMLD
                     PSIPLTTNEYDEWGNPEEPASYEYMLSYSPYDNLAARDYPAMFVGTGLWDSQVQYWEP
                     AKYVARVRDLDTGGRAVVFRTNMDAGHGGKSGRFRRYRELAEMYAFLLDQLGVAGDAA
                     GGG"
BASE COUNT          357 a          960 c         1036 g          444 t
ORIGIN      
        1 cgcggccgcg aacccctgca gcggaatgcg cgcgggcgcg aactcgggcc gccccatcgc
       61 gatgcggtag cgcccgccgc ccagcacgtc gaccgcgtgc gagcccgccg ggctgtcgag
      121 catgaaaccg gtcgccggcg cgccgtcgcg caccagccag gcggcgatgc agcgcgcgcc
      181 gttgccgcat tgctgcgccg acgagccatc ggcgttccag atccggtagg ccgcgacggc
      241 tccgtcgctg cgcggcttct cgacggtcag gatctggtcg cagccgacgc cggtgtggcg
      301 atcgccgagg cggcggcaca gcacgccgtt gggcggcggc gtgccgtcgc gcaggtcgag
      361 cacgacgaag tcgttgcccg caccgtgcat cttggagaag cgcagcggca ggcgcggcgc
      421 cggcgccatg ggctcagccg tggccggcat cggccggcgt ggtggtgtcg gccggcggcg
      481 tggtggtttc ggccggcggg gccgtgctgt cggagggcgg cgcggtgctc gtcggggccg
      541 gcggcagcgg tgccgacgat ggccgcacca gggggccctt gttgccgcag gcggcgagcg
      601 ggagggtcag ggcgagcagg acggcgagcg gcttgggatt catgccgcga gtgtagcgcc
      661 tgcgggcggt cgcccgcccc tgtcccgccg acggcggggc ctgggagccg accgccgcac
      721 tcccgccccg cgcgtcgcgc tatccgccgc cggctgcgtc cccggccacg cccagctggt
      781 cgagcaggaa tgcatacatc tccgccagct cgcgatagcg gcggaagcgt cccgacttgc
      841 cgccgtggcc cgcgtccatg ttggtgcgga acaccacggc gcggccgccg gtgtcgagat
      901 cgcgcacgcg cgccacgtac ttggccggct cccagtactg cacctgcgag tcccacagcc
      961 cggtgccgac gaacatcgcc gggtaatccc gcgccgcgag gttgtcgtag ggcgagtacg
     1021 acagcatgta ctcgtaggac gccggctcct ccgggttgcc ccactcgtcg tattcgttgg
     1081 tggtcagcgg gatgctcggg tcgagcatgg tggtgaccac gtccacgaac ggcacctgcg
     1141 acaggatcac ccggtacttc tccggcgcca tgttggtgat cgcgcccatc agcaggccgc
     1201 cggcgctgcc gccggaggcg gcgacgcggt cgctggcggc atagccttcg cgcaccagga
     1261 aatcggtgac gtcgatgaag tcggtgaagg tgttgcgctt gcgcatcagg cgcccgtcgt
     1321 cgtaccaggc acggcccatt tcctggccgc cgcggatgtg cgcgatcgcg tagaccatgc
     1381 cgcggtcgag caggctgacc accggcaggt tgaaggccgg atccatcgcg tggccgtagc
     1441 tgccgtaggc gtactgcagg agcgcggcgg tgccgtcctt gcggaagccg cgcgcgtaga
     1501 ccagcgacac cggcacccgg gtgccgtcgc gcgcggtcgc ccacaggcgt tcggtttcgt
     1561 atttcgccgg gtcgtagccc agcaccggct gccgcttgag ctggcggcgc tcgccggtgc
     1621 ggacgttgag ctcgtaggtg gtgaccggcg tggtcatcga ggtgtagctg tagcgcagcc
     1681 agtcggtgcc gggctcggaa ttgacgtcca gccccatcga atacgcgggc tcgtcggcct
     1741 gcacgtagtc gccgtgcgct ccttccgcag ccgcacccgc gtcgggctgc cgcagcaggc
     1801 gcaggcgctc caggccattg gatcgctcgg cgatcgcggt gaagccgtcg aacagctcgt
     1861 agccgtcgat gaacacgtcg gcgcggtgcg gcacccactc gcgccactgc gcgcgcgcgc
     1921 tggccgccga cggcgcggtc accagcttga agttgctcgc gccgtcggca ttggtgcgga
     1981 tcacccagcg gtcgccgagg tggtcggcct ggtattcgac ctcgcgttcg cgcggggcaa
     2041 gcacggtgaa tgcgcgcgga tcgtcggccg gggcatagcg cagctcgctg gtgaccgtgc
     2101 tctcgacgct gatgcacagg aagcggtcgt cgcggctgcg gtcgatgccc atgtagaagc
     2161 tgtcgtccgg ctcctcgtag accacctcgt cggcggcggc cggcgtgccg agcaggtgct
     2221 tcttcacccg cttggtcagc agggtgtccg gatcgttctc gatgtagaac acggtgcggt
     2281 tgtcgtcggc ccagaccagg ttgggcgcga cgccgtggat ctcgtcggcg aagacttcgc
     2341 cggtggcgag gtcgcggatg cggatcgtgt actggcggcg gccgaccgcg tcctcggccc
     2401 acgccagcag gcggttgtcc gggctgacct cccagtcgcc gacgctgaaa tagtccttgc
     2461 cgcgcgccat cgcgttgacg tcgagcagca cctgttcgtc cccggcgagc tcgctgccga
     2521 gcgcgggcgt gttgtccggc tggccctgcc ggcgcgcgta caccgggtag tcctggccgg
     2581 tctcgaagcg ggtgtagtac caccagccgc gctcgcggta cgggaccgag ctgtcgtcct
     2641 gcttgatgcg gccgacgatc tcgtcgtaca ggcggtcctc gaccggcctg agcggcgcca
     2701 tccaggcgtc gacgtaggcg ttctccgcgt ggagatacgc gagcatctcg ggattcttgc
     2761 gggtgtcgtc gcgcagccag tagtactcgt cctcgcg
//
LOCUS       DATIQC010000478         2688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_313701, whole genome shotgun sequence.
ACCESSION   DATIQC010000478 DATIQC010000000
VERSION     DATIQC010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313701"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VLM17_10305"
     CDS             complement(<1..271)
                     /locus_tag="VLM17_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008438590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HSR65975.1"
                     /translation="MSEGGLRPRILLVTRNLPPLIGGMEKLNQRLVAGLAAWAEVEVV
                     GPAGCRAALAPARAHEVPPGPLWKFLPAAGAAAVRAAVGARPHLVL"
     gene            complement(264..1115)
                     /locus_tag="VLM17_10310"
     CDS             complement(264..1115)
                     /locus_tag="VLM17_10310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007513921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HSR65976.1"
                     /translation="MRISVILPAKNEAEGLRRTLPALRACLPDAEVIVVDDGSSDDTA
                     AVATRHGARVVASPYSMGNGAAIKRGTRAAGGDVLVFMDADGQHDPALIPGLLERLAQ
                     GFDMVVGARNAAGQASVGRGAANAFYNRLASWMTGHKVADLTSGFRVVRAERFREFLH
                     LLPNGFSYPTTSTMAFFRSAYAVAYVPVPVAQRIGRSHIRPLRDGLRFLLIIFRIATL
                     YSPLKLFAPVGIGFFLLGAGYYAWTFATEHRFTNMSALLLSASVVVFLIGLVSEQITS
                     LTYRRDE"
     gene            1268..>2688
                     /gene="pilB"
                     /locus_tag="VLM17_10315"
     CDS             1268..>2688
                     /gene="pilB"
                     /locus_tag="VLM17_10315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0009297 - pilus assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV-A pilus assembly ATPase PilB"
                     /protein_id="HSR65977.1"
                     /translation="MAANLVGITGIARRLVMDGALEEATAREAMDAATREKRPLAGYL
                     LEKKLIAPADLAAANSIEFGMPIFDVASLDPAQSAIKLVSEELVRKHNALPLFKRGGR
                     LFVGIADPTNTRALDEIKFHVNLTVEAILVDEERIKRTIDQWLETADALADAVADSEG
                     MEGLETSGGDEDLAGSESGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYETEYR
                     VRLRIDGLLKQVAKVPVKLQARIAARLKVMAQLDIAEKRIPQDGRIKLNLSKSKQIDF
                     RVSTLPTLFGEKIVLRILDAGAAKLGIDKLGYEEDQKKLFLDAIKKPYGMVLVTGPTG
                     SGKTVSLYTALNILNDDSRNISTVEDPVEIRVPGINQVQMNVKRGMTFAAALRSFLRQ
                     DPDVIMVGEIRDLETAEIGIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPFNITSS
                     VSLVIAQRLARRLCGNCKREAVLP"
BASE COUNT          484 a          911 c          944 g          349 t
ORIGIN      
        1 cgagcacgag gtgcgggcgc gcgccgaccg ccgcgcggac cgcggcggcg cccgcggcgg
       61 gcaggaactt ccacaacggg ccgggcggca cctcgtgcgc gcgggccggg gcgagggcgg
      121 cgcggcatcc ggccggcccg accacctcga cctcggccca cgcggcgagc cccgccacca
      181 gccgctggtt gagtttctcc atgccgccga tcaacggcgg caggttgcgc gtcaccagca
      241 ggatgcgcgg gcgcaggccg ccctcactca tcgcgccggt acgtcaggct ggtgatctgc
      301 tccgacacca ggccgatcag gaacacgacc acggatgcgc tgagcagcag cgcgctcatg
      361 ttggtgaagc ggtgctcggt ggcgaaggtc cacgcgtaat agccggcgcc gagcaggaag
      421 aagccgatgc ccaccggcgc gaacagcttg agcggcgagt acagggtggc gatgcggaag
      481 atgatcagca ggaagcgcag gccgtcgcgc agcgggcgga tgtggctgcg cccgatgcgc
      541 tgggcgaccg gcaccgggac gtaggcgacc gcgtaggcgc tgcggaagaa cgccatggtg
      601 ctggtggtgg gatagctgaa cccgttcggc agcaggtgca ggaattcgcg gaagcgctcg
      661 gcgcgcacca cccggaagcc ggaagtcagg tcggccacct tgtgcccggt catccagctg
      721 gcgagccggt tgtagaaggc attcgcggcg ccgcggccga cgctggcctg gccggcggcg
      781 ttgcgcgcgc cgaccaccat gtcgaagccc tgcgcgagcc gctcgagcag ccccgggatc
      841 agcgccgggt cgtgctggcc gtcggcatcc atgaatacga ggacgtcgcc gccggcggcg
      901 cgggtgccgc gcttgatcgc ggcgccgttg cccatcgaat agggggacgc gaccacccgg
      961 gcgccatggc gggtggccac ggcggcggtg tcgtcgctgg agccgtcgtc gacgacgatg
     1021 acctcggcat ccggcaggca ggcgcgcaac gccggcagcg tccgcctgag gccttcggct
     1081 tcgttcttgg ccggcaggat caccgatatg cgcatgcgcc ctccccttcg gccacagggt
     1141 atcccgaagc gggcgtgaag gcagcccaag cggctgaaac cttggaaaaa aacgcgaccg
     1201 cagcccactt gtccacaagc gggattgggg taaagtcgag gttggggaag tacctgagaa
     1261 gcacgaaatg gccgcgaacc tggtcgggat caccggcatc gcccggcgcc tggtgatgga
     1321 cggcgcactg gaggaagcca ccgcgcgcga ggcgatggac gcggccaccc gcgagaagcg
     1381 cccgctcgcc ggctacctgc tggagaagaa gctgatcgcc ccggccgacc tggcggcggc
     1441 gaactcgatc gagttcggca tgccgatctt cgacgtggcc tcgctggacc cggcgcagtc
     1501 ggcgatcaag ctggtcagcg aggaactggt ccgcaagcac aacgcgctgc cgctgttcaa
     1561 gcgcggcggg cggctgttcg tcggcatcgc cgacccgacc aacacgcgcg ccctcgacga
     1621 gatcaagttc cacgtcaacc tgacggtcga ggcgatcctg gtcgacgagg agcgcatcaa
     1681 gcgcaccatc gaccagtggc tggaaaccgc cgatgcgctc gccgacgcgg tcgccgacag
     1741 cgagggcatg gaagggctgg agaccagcgg cggcgacgag gacctcgccg gcagcgagtc
     1801 gggcgtcgac gccaagggcg acgacacgcc ggtcgtgaag ttcgtcaaca aggtgctggt
     1861 cgacgcgatc cgccgcggcg cctcggacat ccatttcgag ccgtacgaga ccgaataccg
     1921 cgtgcgcctg cgcatcgacg gcctgctcaa gcaggtcgcc aaggtgccgg tgaagctgca
     1981 ggcgcgcatc gccgcgcgcc tgaaggtgat ggcccagctg gacatcgccg agaagcgcat
     2041 cccgcaggac gggcgcatca agctcaacct gtccaagagc aagcagatcg acttccgcgt
     2101 gagcacgctg ccgacgctgt tcggcgagaa gatcgtgctc cgcatcctcg atgccggggc
     2161 ggccaagctc ggcatcgaca agctcggcta cgaggaagac cagaagaagc tgttcctcga
     2221 cgcgatcaag aagccctacg gcatggtgct ggtcaccggc ccgaccggct cgggcaagac
     2281 cgtgtcgctg tacacggcgc tgaacatcct caacgacgac agccgcaaca tctccaccgt
     2341 cgaggacccg gtcgaaatcc gcgtgccggg catcaaccag gtgcagatga acgtcaagcg
     2401 cggcatgacc ttcgccgccg ccctgcgttc gttcctgcgc caggacccgg acgtgatcat
     2461 ggtcggcgaa atccgcgacc tcgagacggc ggagatcggc atcaaggctg cgcagaccgg
     2521 ccacatggtg ctctccacgc tgcacaccaa cgacgcgccg cagaccatcg cgcgcctgat
     2581 gaacatgggt atcgcgccgt tcaacatcac ctcctcggtc agcctggtga tcgcgcagcg
     2641 cctcgcgcgc cgcctgtgcg gcaactgcaa gcgcgaagcc gtgctgcc
//
LOCUS       DATIQC010000479         2827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_383785, whole genome shotgun sequence.
ACCESSION   DATIQC010000479 DATIQC010000000
VERSION     DATIQC010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383785"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1368)
                     /locus_tag="VLM17_10320"
     CDS             complement(<1..1368)
                     /locus_tag="VLM17_10320"
                     /EC_number="2.7.7.13"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004476 - mannose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate
                     guanylyltransferase/mannose-6-phosphate isomerase"
                     /protein_id="HSR65978.1"
                     /translation="MAKLQPVLLSGGSGTRLWPLSREAYPKQFLPLAGEDTMLQATWQ
                     RVAPMADAAPIVVANEEHRFLVAEQLRQAGAPTPAILLEPVGRNTAPAIAAAALQATA
                     DGDDPLLLVLPSDHVVRDADAFRAAVGQAAAAAERGALVTFGIHPTGPETGFGYIQSG
                     AGHSAGEGVRKVLRFVEKPDAATAQAYLAEGGYSWNSGMFLFRASRYLGELARFRPDI
                     LAAVRDAFARARRDGDFVRLDRDAFAASPADSIDYAVMEKTDAAMVLPVDIGWNDVGS
                     WSALWDVAERDSEGNAYLGDVIAVDTRNSYAYARRLVALVGVDDLVVVETDDAVLVAR
                     KDRVQEVKQVVARLKASQRSQAALHREVHRPWGSYDSVDVGDGFQVKRIKVKPGAALS
                     LQSHDRRAEHWIVVRGTARVTRNNDMFELHANQSTYIPIGARHRLENPGTGMLELIEV
                     QSGDYL"
     gene            1437..2450
                     /locus_tag="VLM17_10325"
     CDS             1437..2450
                     /locus_tag="VLM17_10325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019185647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HSR65979.1"
                     /translation="MTQPADDTSHRADARLAWTRAALADPGAGLERASMDAGFRSYWR
                     TLGHAPSRIVMDSPPDKEDVRPWLRIHDLLEGGGVRVPRVLARDVDAGFLLLEDLGAR
                     TCLQVLDDGNADGLFDAALDQLLRLQAIAPPAGLPAYDEALLARELRLFDEWFLGRHL
                     GLALDCEALETLDAAYRALIDAALAQPRVLVHRDFMPRNLMPAGDTLAVLDFQDAVEG
                     PIAYDVLSLFKDAFHSWPEERVAGWVAHYHARAVDAGLPVPELARFRRDVDWIGVQRH
                     LKVIGIFARLHHRDHKPRYLQDVPRFFAYLDGVLPRYPEFDGLRRLIDGRVRPAMAAP
                     ADA"
     gene            2461..>2827
                     /locus_tag="VLM17_10330"
     CDS             2461..>2827
                     /locus_tag="VLM17_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HSR65980.1"
                     /translation="MKALIFAAGLGERMRPLTDTTPKPLLPAGGRPLVAWHLEKLAAC
                     GVREVVVNTSWLAHAFPPTLGDGARWGLRLHYVYEGPTPLETGGGMWNALALLADTPN
                     APFLAINGDIWTDYDFGRLP"
BASE COUNT          373 a         1057 c          995 g          402 t
ORIGIN      
        1 gaggtagtcg cccgactgca cctcgatcag ctcgagcatg ccggtgccgg gattctccag
       61 gcggtgcctg gcgccgatcg ggatgtaggt cgactggttg gcgtgcagtt cgaacatgtc
      121 gttgttgcgg gtcacgcgcg cggtgccgcg caccacgatc cagtgttccg cgcgccggtc
      181 gtgcgactgc agcgagagcg ccgcgcccgg cttgaccttg atccgcttga cctggaagcc
      241 gtcgccgacg tcgaccgagt cgtagctgcc ccaagggcgg tgcacctcgc ggtgcagcgc
      301 cgcctggctg cgctgcgagg ccttcagccg cgccaccacc tgcttcactt cctgcacccg
      361 gtccttgcgc gcgaccagga ccgcgtcgtc ggtctccacc accacgaggt cgtcgacgcc
      421 gaccagcgcc accagccgcc gtgcgtaggc gtagctgttg cgggtgtcga ccgcgatcac
      481 gtcaccgagg tacgcgttgc cttcgctgtc gcgctcggcc acgtcccaca gcgccgacca
      541 cgaaccgacg tcgttccagc cgatgtccac cggcagcacc atcgccgcgt cggtcttctc
      601 catcaccgcg tagtcgatcg aatccgccgg cgacgccgcg aacgcgtccc ggtcgaggcg
      661 gacgaagtcg ccgtcgcggc gcgcccgcgc gaaggcatcg cgcacggccg cgaggatgtc
      721 gggccggaag cgcgccagct cgccgaggta gcgcgaggcg cggaacagga acatgccgct
      781 gttccaggaa tacccgccct cggccaggta ggcctgcgcg gtggcggcat cgggcttctc
      841 gacgaagcgc agcaccttgc gcacgccttc gccggcggag tggccggcgc cggactggat
      901 gtagccgaag cccgtctcgg gcccggtcgg atggatgccg aaggtgacca gcgcgccccg
      961 ctccgccgcg gcggcggcct gcccgacggc ggcacggaag gcgtcggcat cgcgcaccac
     1021 gtggtcggaa ggcagtacca gcagcagcgg gtcgtcgccg tcggcggtcg cctgcagcgc
     1081 ggccgccgcg atcgccggcg cggtgttgcg gccgaccggt tcgagcagga tcgcgggcgt
     1141 cggcgcgccg gcctggcgca gctgctcggc gaccaggaag cggtgttcct cgttggccac
     1201 cacgatcggc gcggcgtcgg ccatcggcgc gacgcgctgc caggtcgcct gcagcatcgt
     1261 gtcctcgccg gccagcggca ggaactgctt ggggtaggcc tcgcgcgaga gcggccacag
     1321 gcgggtgccg gagccgccgg acagcaacac gggttgcagt ttcgccacgc tccactccct
     1381 tcgatgcggc gccgcagttt accctgagct tctccgcgcc ctcgcacgca cgccgcatga
     1441 cccagcccgc cgacgacaca tcccatcgcg ccgacgcccg cctcgcctgg acgcgcgcgg
     1501 cgctggccga tcccggcgcc ggcctcgaac gcgcctcgat ggacgccggc ttccgcagct
     1561 actggcgcac gctcgggcac gcgccgagcc gcatcgtgat ggactcgccg cccgacaagg
     1621 aggacgtgcg cccgtggctg cgcatccacg acctgctcga gggcggcggc gtgcgcgtgc
     1681 cacgcgtgct cgcgcgggac gtcgacgccg gcttcctcct gctcgaggac ctcggcgccc
     1741 gcacctgcct gcaggtgctc gacgacggca atgccgacgg gctgttcgac gcggcgctcg
     1801 accagctgct gcggctgcag gcgatcgcgc cgccggcggg cctgccggcc tacgacgagg
     1861 ccctgcttgc gcgcgaactg cgcctgttcg acgaatggtt cctcggccgc cacctcgggt
     1921 tggcgctcga ttgcgaggcg ctggagacgc tggacgcggc ctaccgtgcg ctgatcgacg
     1981 ccgcgctcgc gcagccgcgc gtgctggtgc accgcgactt catgccgcgc aacctcatgc
     2041 cggccggcga caccctggcc gtgctcgact tccaggacgc ggtggagggg ccgatcgcct
     2101 acgacgtgct cagcctgttc aaggatgcct tccacagctg gccggaggaa cgcgtcgccg
     2161 gctgggtggc gcattaccat gcgcgcgccg tcgacgccgg gctgccggtg ccggagctcg
     2221 cgcgcttccg ccgcgacgtc gactggatcg gcgtgcagcg gcacctgaag gtgatcggca
     2281 tcttcgcccg cctccaccac cgcgaccaca agcccaggta cctgcaggac gtgccgcgct
     2341 tcttcgccta cctagacggg gtgctgccgc gctacccgga gttcgacgga ctgcgccggc
     2401 tgatcgacgg gcgcgtgcgg ccggcgatgg cggcaccggc ggacgcgtga gtcgcgcggc
     2461 atgaaggccc tgatcttcgc cgccggcctc ggcgaacgca tgcggccgct caccgatacg
     2521 acccccaagc cgctgctgcc ggccggcggc aggccgctgg tcgcgtggca cctggagaag
     2581 ctcgccgcgt gcggcgtgcg cgaggtggtg gtcaacacca gctggctggc gcacgcgttc
     2641 ccgcccacgc tcggcgacgg cgcgcgctgg ggcctgcgcc tgcactacgt ctacgaaggc
     2701 ccgacgccgc tggaaaccgg cggcggcatg tggaacgcgc tggcactgct ggctgacacg
     2761 ccgaacgccc ccttcctcgc gatcaacggc gacatctgga ccgactacga tttcggccgg
     2821 ctgcccg
//
LOCUS       DATIQC010000480         6949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_631357, whole genome shotgun sequence.
ACCESSION   DATIQC010000480 DATIQC010000000
VERSION     DATIQC010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6949
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631357"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..702)
                     /locus_tag="VLM17_10335"
     CDS             complement(<1..702)
                     /locus_tag="VLM17_10335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HSR65981.1"
                     /translation="MRAVRALALAGAALLAACSSAPHKPAPPTASRVEPAKPARKPDA
                     RRSPYAPAQEDLGKRGNYTRGGLYAPGVQDSVPGTALADVDQIPEPDVVDLPHSAYGN
                     RSPYNVLGRQYTVLADAHGYDETGLASYYGQKFHGRRTSNLEVYDMYAFTAAHRTLPL
                     PSFARVTNLANGKSVIVRVNDRGPFHDGRLIDLSYAAAVKLGVYPHGTARVQVHGLTA
                     ADMLDSDQRVADNDAP"
     gene            complement(699..1808)
                     /gene="mltB"
                     /locus_tag="VLM17_10340"
     CDS             complement(699..1808)
                     /gene="mltB"
                     /locus_tag="VLM17_10340"
                     /inference="COORDINATES: protein motif:HMM:NF024798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HSR65982.1"
                     /translation="MTIRTLLPVALALALAACAAHAPPPAPASPAATVEIPEPLLPPV
                     PQPPERPLPPASVTDPALPREARVAAFVDYTARMYQVNPDAIRMQLAQAQLVQRTLDI
                     ISRPAEAVRPWRDYRPIFITDARIQAGVAFYQANRALLDRIAAETGVPPEYIVAIIGV
                     ETFYGKNLGTYRVLDVLDTLAFDYPKRAPFFAGELAQLFALGQDEHLDVSTLTGSYAG
                     AMGWGQFMPSSWRVWGKDGDGDGRRDLIGDQADVFASIANYFVAHGWERGAPVVARAT
                     LDPSKAEFLPGTVDPVYPPADLAAHGYRVQPGEPVPAATQSPGATVLGLDGDAGREYW
                     FGYRNFYVITRYNHSPMYALAVHQLAQAIRAGAGP"
     gene            complement(2193..3305)
                     /gene="rodA"
                     /locus_tag="VLM17_10345"
     CDS             complement(2193..3305)
                     /gene="rodA"
                     /locus_tag="VLM17_10345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005419392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HSR65983.1"
                     /translation="MSLLLRWLIDLVARFVRTLDIPLCLALGALMVIALMVLYSAGNE
                     SSSIVVAQGSRFVLGLGGMWLMSRLPPTRLRHWTPLVYGLSLVPLLIVLVIGQGKHGN
                     LWINLGVFYFQPAEVLKLSLPMMTAWFLYRERLPPSFTTVLVAGAIIGVPTLLILLQP
                     DFGTAMLVGIAGAFVLYLAGLSWWWFAAAGGGVAAVAPVAWFFLLRPYQKDRILTFLN
                     PESDPLGSGWNIIQSKIAIGAGGFTGKGWGQGTQSHLNYLPEHTTDFIFAVLSEEFGW
                     LGVATVLALYLFIIGRCLWIASEARDGYSRLLAGSLGLSMLVYVVVNGGMISGLLPVV
                     GVPMPLLSYGGTSAVSLLAGLGVVMAVRAHRPTHGG"
     gene            complement(3302..5380)
                     /gene="mrdA"
                     /locus_tag="VLM17_10350"
     CDS             complement(3302..5380)
                     /gene="mrdA"
                     /locus_tag="VLM17_10350"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HSR65984.1"
                     /translation="MSPRRRHLKHAAAEAAQFRVRAAIGFACVLVALGGLAAWYFRLQ
                     VVQHAEYVTRSEANRIKPRPVLPARGLIYDRKGRILADNVPAYRLDVQPDKAGDPKQL
                     IAELSKIIALSPDDIDRFEDERKATRGLRPVTLKLRIGDEEAARFAVDRWRFPGVDLV
                     PYLNRRYPYGALFAHVIGYVGRVDERDLKQLGEANSAFTHTGKAGLERYYDEALRGRI
                     GYEQVETNVEGRALGTVGRVPATPGADLRLSIDADLQQATIDAFGDFDGAAVAVDPRT
                     GEVLAMVSLPGFDPNLFVNGISRTDYKALNDNPSRPLFNRNVLGGGPPGSTVKPFIGL
                     AGLDSGLRTPEDKVFSTGEFHIPGQRRGYRDAHGGAGWTDLRKAIAESVNFYFYKLAF
                     DMGIDRFATWMARYGFGERTGIDLAGENAGVVPSPGWKAKRSKEPWYAGETVISGIGQ
                     GYWVATTLQLVRGVSAIANGGHLPRLHLVSQRRDGYNALWLPLPQPASRAITEHPGHL
                     RAVQEGMEETMMPGGTGAALVVGAPYRVAGKTGTAQKVSRKGNVSMDPHQLPISLRHQ
                     AWFIGYAPVEDPKIAVAVMVEHGGFGASSAGPIARKMMDAYLLGKMPGPPVRKDDAPL
                     APKFGNVVAGRVPARPAAATGAAPSAPLATAPTPGDAPSAAVPHSSDATAASVPAGAG
                     AAASSTASAP"
     gene            complement(5385..5864)
                     /gene="mreD"
                     /locus_tag="VLM17_10355"
     CDS             complement(5385..5864)
                     /gene="mreD"
                     /locus_tag="VLM17_10355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019186042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HSR65985.1"
                     /translation="MSRTVRHWLLPLSAFAALLLGLLPLTPLLQPLRPYWLALVLAYW
                     TLEQPERVGLGFAFAVGVLADLVYGTLLGEQALRLVIMTFILQRFRARLRFFPLWQQA
                     LAIGALLLNDRVVSAAVHTALGTPQLPWAFWWAPLLGLALWAPLFLLLDTLRIGRRG"
     gene            complement(5861..6877)
                     /gene="mreC"
                     /locus_tag="VLM17_10360"
     CDS             complement(5861..6877)
                     /gene="mreC"
                     /locus_tag="VLM17_10360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003477838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HSR65986.1"
                     /translation="MPAYAGSPAPKPGDVAGTLRLLAYLALAITLAVLDHRGGWLAQL
                     RARGETLAQPVWWLAGLPGRMGDDLRDTATTRDQLARDNKTLRNALMISGARLARLQA
                     AAAENARLRGLLAAAQRGGLDVQLAPILDVDLDPTRQRLVLDAGRRDGIEMGQSVIDA
                     GGLLGQVVALTPQTATVLLLTDPDHAVPVVVARNGVRLVAYGQGRSDQLRLPNIPISS
                     DVKVGDAVVTSGLGGRFPAGFPVGTITALQPDESRAFLVGDVKPAAQLDRGRDVLLLR
                     KEAEAAAQEGAAPGTTVGATRQAARPAGPGDRPSPPTPVHPAAPAGKADATPVPPTTT
                     ASPP"
BASE COUNT         1021 a         2364 c         2631 g          933 t
ORIGIN      
        1 cggcgcgtcg ttgtcggcga cgcgctggtc gctgtcgagc atgtcggcgg cggtgaggcc
       61 gtgcacctgc acgcgcgcgg tgccgtgcgg gtagacgccg agcttcaccg cggcggcata
      121 gctgaggtcg atcaggcggc cgtcgtggaa cgggccgcgg tcgttgacgc gcacgatcac
      181 cgacttgccg ttggcgaggt tggtgacgcg cgcgaagctc ggcaatggca gcgtgcggtg
      241 cgcggcggtg aaggcgtaca tgtcgtacac ctccaggttg gacgtgcggc ggccgtggaa
      301 tttctgcccg tagtacgagg cgagcccggt ctcgtcgtag ccgtgcgcgt cggcgagcac
      361 ggtgtactgc ctgccgagca cgttgtacgg cgaacggttg ccgtaggccg agtgcggcag
      421 gtcgacgacg tctggttcgg gaatctggtc gacatcggcc agcgccgtgc ccggcacgct
      481 gtcctggacc ccgggcgcgt acaggccgcc gcgcgtgtaa ttgccgcgct tgccgaggtc
      541 ttcctgcgcc ggcgcgtagg gcgaacggcg cgcatcgggc ttgcgggcgg gcttcgccgg
      601 ttcgacgcgg gacgcggtgg gcggcgcggg cttgtgcggg gcgctgctgc aggccgcgag
      661 caatgcggcg cccgcgaggg ccagcgcgcg caccgccctc atggccccgc gcccgcgcgg
      721 atcgcctgcg ccagctggtg cacggccagc gcatacatcg gcgagtggtt gtagcgggtg
      781 atcacgtaga agttgcggta gccgaaccag tattcgcggc cggcgtcgcc gtcgaggccg
      841 agcacggtcg cgcccggcga ctgcgtcgcg gccggaaccg gctcgcccgg ctgcacgcgg
      901 tagccgtgcg cggcgaggtc ggcgggcgga tacaccggat cgaccgtgcc gggcaggaac
      961 tccgccttcg acggatccag cgtcgcgcgc gcgaccaccg gtgcgccccg ctcccagccg
     1021 tgggcgacga agtagttggc gatcgaggcg aacacgtcgg cctggtcgcc gatcaggtcg
     1081 cggcggccgt cgccgtcgcc gtccttgccc cagacgcgcc agctcgaggg catgaactgg
     1141 ccccagccca tcgcgccggc gtagctgccg gtgagggtgg acacgtcgag gtgctcgtcc
     1201 tggccgagcg cgaacagctg ggccagctcg ccggcgaaga acggcgcgcg cttcgggtag
     1261 tcgaaggcga gcgtatcgag cacgtcgagc acgcggtacg tgccgaggtt cttcccgtag
     1321 aaggtctcga cgccgatgat cgcgacgatg tattcgggcg gcacgccggt ctcggcggcg
     1381 atgcggtcga gcagcgcgcg gttggcctgg tagaaggcga cgccggcctg gatgcgcgcg
     1441 tcggtgatga agatcgggcg gtagtcgcgc cacgggcgca ccgcctcggc cgggcgcgag
     1501 atgatgtcga gggtgcgctg cacgagctgc gcctgcgcca gctgcatgcg gatcgcgtcc
     1561 ggattcacct ggtacatccg cgcggtgtaa tcgacgaacg cggcgacccg cgcctcgcgc
     1621 ggcagcgcgg gatcggtgac cgaggcgggc ggcaacggac gctccggcgg ctgcggcacg
     1681 ggcggcagca ggggctcggg gatttcgacg gtggccgcgg gcgaggcggg cgcgggaggc
     1741 ggagcgtgcg cggcgcaggc ggcgagggcc agcgcgagcg ccacgggcag cagcgtgcgg
     1801 atcgtcatcg agcggagggt acacgcggtt ttgcgcgagg ggaaccgcat gcgcgcgcat
     1861 ggatcgcggc tcgaagccac ggattccgct tccagccagc ctgcgtgatc tccagacccg
     1921 aagggcggcg gtcaggaatg cccgccgttt tcggaccggg ccatggaatg gcgagtacga
     1981 aaatcccgaa ggcgtgcccg gtcgccggac cggtttgccg gggaggccat ttctttttgg
     2041 cgactttttc ttcgggcccg caaggaaaaa aattactcgg ccgaggcagc ggacgaagac
     2101 cggcgccttc gcaagaacat cagacgtcgc ggtttcgcgc cttggggaaa ggcggtaagc
     2161 attcgaccgg gcgaaccaac ttgcgcgacc gctcacccac catgcgtcgg ccggtgggcg
     2221 cgcaccgcca tcaccacgcc caggcccgcg agcagcgaca ccgccgacgt gccgccgtag
     2281 ctgagcagcg gcataggcac gccgaccacg ggcagcaggc cggagatcat cccgccgttg
     2341 accacgacgt agaccagcat cgacaggccg aggctgccgg cgagcaggcg cgagtaaccg
     2401 tcgcgcgcct cgctcgcgat ccagaggcag cgaccgatga tgaacaggta cagcgcgagc
     2461 accgtcgcca cgccgagcca gccgaattcc tcgctcagca ccgcgaagat gaagtcggtg
     2521 gtgtgctcgg gcaggtagtt gaggtgcgac tgcgtgccct gtccccaccc cttgccggtg
     2581 aagccgccgg cgccgatcgc gatcttcgac tggatgatgt tccagccgct gccgagcgga
     2641 tccgattcgg gattgaggaa ggtgaggatg cggtccttct ggtacggccg cagcaggaag
     2701 aaccacgcga ccggcgcgac cgccgcgacg ccgccgccgg cggcggcgaa ccaccaccac
     2761 gacagcccgg cgagatacag cacgaacgcg ccggcgatgc cgaccagcat ggcggtgccg
     2821 aagtccggct gcagcaggat cagcagcgtg ggcacgccga tgatcgcgcc ggcgaccagc
     2881 actgtggtga agctgggcgg cagccgttcg cgatacagga accaggcggt catcatcggc
     2941 aggctcagct tgagcacttc cgccggctgg aaatagaaca cgccgaggtt gatccacagg
     3001 ttgccgtgct tgccctgccc gatcaccagc acgatcagca gcggaaccag cgacagcccg
     3061 tacaccagcg gcgtccagtg gcgcagccgc gtgggcggca gccgcgacat cagccacatg
     3121 ccacccagcc cgaggacgaa gcgcgagccc tgggcaacga cgatcgacga cgactcgttt
     3181 ccggcgctgt acagcaccat cagcgcgatc accatcaacg cgccgagcgc caggcacagc
     3241 gggatgtcga gcgtgcgcac gaagcgcgcg accaggtcga tcagccagcg cagcaggagg
     3301 ctcatggggc ggaggccgtc gaggacgccg cggcgccggc gccggcggga accgacgcgg
     3361 ccgtggcgtc gctgctgtgc gggacggccg cggacggcgc gtcgccaggc gtcggcgccg
     3421 tcgcgagcgg cgcgctgggg gccgcgccgg tggccgctgc aggccgcgcc ggcactcgcc
     3481 ccgccaccac gttgccgaac ttcggcgcga gcggcgcatc gtccttgcgc accggcggcc
     3541 ccggcatctt cccgagcagg tacgcgtcca tcatcttgcg cgcgatcggg ccggcggagc
     3601 tcgcgccgaa gccgccgtgc tcgaccatca ccgcgaccgc gatcttcgga tcctcgaccg
     3661 gcgcgtagcc gatgaaccac gcctggtggc gcagcgagat cggcagctgg tgcggatcca
     3721 tgctgacgtt gcccttgcgg ctgaccttct gcgcggtgcc ggtcttgccg gcgacgcggt
     3781 agggcgcgcc caccaccaag gcggcgccgg tgccgccggg catcatggtt tcctccatgc
     3841 cctcctgcac cgcgcgcagg tgcccgggat gctcggtgat cgcgcgcgac gcgggttgcg
     3901 gcagcggcag ccacagcgcg ttgtagccgt cgcggcgctg cgacaccagg tgcaggcgcg
     3961 gcaggtggcc gccgttggcg atcgccgaca cgccgcgcac gagctgcagc gttgtcgcca
     4021 cccagtagcc ctggccgatg ccgctgatca cggtctcgcc ggcgtaccac ggctccttgc
     4081 tgcgtttcgc cttccagccc ggcgagggca ccacgcccgc gttctcgccg gcgaggtcga
     4141 tgccggtgcg ctcgccgaag ccgtacctcg ccatccacgt ggcgaagcgg tcgatgccca
     4201 tgtcgaaggc gagcttgtag aagtagaagt tcaccgactc ggcgatcgcc ttgcgcaggt
     4261 cggtccagcc ggcgccgccg tgcgcgtcgc gatagccgcg ccgctggccg gggatgtgga
     4321 actcgccggt ggagaacacc ttgtcctcgg gcgtgcgcag gccgctgtcg aggccggcga
     4381 ggccgatgaa gggcttcacc gtcgagcccg gcggcccgcc gccgagcacg ttgcggttga
     4441 acagcgggcg cgacgggttg tcgttgagcg ccttgtagtc ggtgcgcgag atgccgttga
     4501 cgaacaggtt ggggtcgaag cccggcaggc tgaccatcgc cagcacctcg ccggtgcgcg
     4561 gatcgaccgc gaccgcggcg ccgtcgaagt cgccgaaggc gtcgatggtg gcctgttgca
     4621 ggtcggcgtc gatcgacagg cgcaggtccg cgccgggcgt ggccggcacc cgcccgacgg
     4681 tgccgagcgc gcggccctcg acgttggttt ccacctgctc gtagccgatg cggccgcgca
     4741 gcgcctcgtc gtagtagcgc tcgaggccgg ccttgccggt gtgggtgaac gccgaattcg
     4801 cctcgccgag ctgcttgagg tcgcgctcgt cgacgcggcc gacgtagccg atcacgtgcg
     4861 cgaacagcgc gccgtaggga tagcggcggt tgaggtaggg cacgaggtcc acgccgggga
     4921 agcgccagcg gtcgaccgcg aagcgcgcgg cctcctcgtc gccgatgcgc agcttgagcg
     4981 tgaccgggcg caggccgcgg gtggccttgc gctcgtcctc gaagcggtcg atgtcgtccg
     5041 ggctgagcgc gatgatcttc gacagttcgg cgatcagctg cttcgggtcg ccggccttgt
     5101 ccggctgcac gtcgagccgg tacgcgggca cgttgtcggc gaggatgcgg cccttgcggt
     5161 cgtagatcag cccgcgcgcc ggcagcaccg ggcgcggctt gatgcggttg gcttcagaac
     5221 gggtgacgta ttcggcgtgc tgcaccacct gcaggcggaa gtaccacgcg gcgagcccgc
     5281 cgagcgcgac cagcacgcag gcgaagccga tcgccgcgcg cacgcggaac tgcgcggcct
     5341 cggcggcggc atgcttgagg tggcggcggc gcgggctcat cggctcagcc ccggcggccg
     5401 atccgcagcg tgtccagcag caggaagagc ggcgcccaca gcgcgagccc gagcagcggc
     5461 gcccaccaga acgcccatgg cagctgcggc gtgccgagcg cggtatgcac ggccgcgctg
     5521 accacgcggt cgttgagcag cagcgcgccg atcgccagcg cctgctgcca cagcgggaag
     5581 aaacgcaggc gcgcgcggaa gcgctgcagg atgaaggtca tgatcaccag gcgcagcgcc
     5641 tgctcgccga gcagggtgcc gtagacgagg tcggccagca cgcccaccgc gaaggcgaag
     5701 ccgaggccga cgcgttcggg ctgctccagc gtccagtagg cgagcaccag cgcgagccag
     5761 taaggccgca gcggttgcag cagcggggtc agcggcagca ggccgagcag cagcgcggcg
     5821 aacgcgctca gcggcagcag ccagtggcgg acggtacggc tcatgggggc gaagccgtgg
     5881 tggtcggcgg gacgggcgtg gcgtccgcct ttcctgccgg cgcggcggga tggacgggcg
     5941 tcggcggcga tggtcggtcg ccgggacccg cggggcgcgc ggcctggcgc gtcgcaccga
     6001 cggtcgtacc cggcgccgcg ccctcctggg cggccgcttc cgcttccttg cgcagcagca
     6061 gcacgtcgcg gccgcgatcc agctgcgcgg cgggcttcac gtcgccgacc aggaacgcgc
     6121 ggctctcgtc cggttgcagc gcggtgatcg tgccgacggg gaagccggcg ggaaaacgtc
     6181 cgcccaggcc cgaggtcacc accgcgtcgc ccaccttgac gtcgctcgag atcgggatgt
     6241 tgggcaggcg cagctggtcg ctgcggccct ggccgtaggc gaccaggcgc acgccgttgc
     6301 gcgcgaccac caccggcacc gcatggtcgg gatcggtgag cagcagcacg gtcgcggtct
     6361 gcggggtcag cgcgaccacc tggccgagca ggccgccggc gtcgatcacg ctctggccca
     6421 tctcgatgcc gtcgcggcgg ccggcatcga gcaccaggcg ctggcgggtg ggatcgaggt
     6481 cgacgtcgag gatcggcgcg agctgcacgt cgagtccgcc gcgctgcgcc gcggcgagca
     6541 ggccgcgcag gcgcgcgttc tcggcggcgg cggcctgcag gcgcgccagc cgcgcaccgc
     6601 tgatcatcag cgcgttgcgc agcgtcttgt tgtcgcgcgc gagctggtcg cgcgtggtcg
     6661 cggtgtcgcg caggtcatcg cccatgcgcc cgggcaaccc cgccagccac cacaccggct
     6721 gcgccagcgt ctcgccgcgc gcgcgcaact gcgccagcca gccgccgcga tggtcgagca
     6781 cggccagcgt gatcgccagc gcgaggtagg ccagcagccg cagcgtgccg gccacgtcac
     6841 cgggcttggg tgcgggagaa ccggcgtagg cgggcacggt ggcgtgtcgg gaagattggg
     6901 agtcagggag gcgtggaacg aagcatcgtt ttgatccagg gatggatca
//
LOCUS       DATIQC010000481         3080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_525134, whole genome shotgun sequence.
ACCESSION   DATIQC010000481 DATIQC010000000
VERSION     DATIQC010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3080
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525134"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..2955
                     /locus_tag="VLM17_10365"
     CDS             58..2955
                     /locus_tag="VLM17_10365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004425764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HSR65987.1"
                     /translation="MAIVDGQNLFDLDVEIPSREQKKSNIYKGRITRVEPSLEACFVE
                     YGGERHGFLPLKEIGREYFTPGVDPNKAGIRELLKEGREVIVQVDKEERGNKGAALTT
                     FISLAGRYMVLMPNSPTAGGVSRRIEGDDRAALKEAMDKLDIPDDMGVIIRTAGVGRD
                     AEELQWDLDYLLSVWKAIADAALTKPAPFLIYQESRLIIRALRDYMRPDVGEILVDTK
                     EMYEEAREFVEQVMPHNQRKLKHYTDDTPLFNRFQIESQIENAYERNVRLPSGGALVI
                     DQTEALTAVDVNSARATKGGDIEETAFHTNLEAAEEVARQLRLRDLGGLVVVDFIDMA
                     SSKHQREVENRLQNALRSDRARVQIGRISKFGLLEMSRQRLRPSLGEASQIVCPRCEG
                     HGRLRSIESLALSIIRVAEEHAMKDNTGQVLVQAPVEIANYLLNEKRRALSEIEQRHD
                     APIVIVADDQLETPHYEVTRIRENELGEETSKPSYQRGTPRKLATIALTKANLNVPAA
                     PAVTNVKPAQPAPVREPREETPAPAPAPIAPAPQPVATGGLVGWLRGLFAPAAAPAPA
                     APQPLRGDDGRGRNDRQRRDGRDGRNKPGRDQRRERDERRGQQAQAGQPQQQKQREQQ
                     KPSQQQAQQKQKPQQPQKQTQQAQQQQKQKPQEERQPQVAQQPAQPRLQQVPQPQKPA
                     RAPETEPEAAMDMPVVAPVAVPVEHAAVVPPGDAVATPSAERAEADADAAQAADAAQG
                     EGGRRRRGRRGGRRRRRGAGEGATAGEVAPEHEDGSDEDVVAAQRSQPEFDFDDEAAE
                     ASAVAATFRPAPPAPPVPEVRATPAAEPVPAAVPPPAHETAVADVAPASEPALPAFGA
                     DGSRDEAAPAFPVEDSVGPGPHIDEAEIAANELPSNEPSPALEPVSFAAADSAALGVP
                     EGSAADIGHAPGLFDALPAPAPAEADPAEAAADAASQLAASGNGSGEARNV"
BASE COUNT          530 a         1134 c         1068 g          348 t
ORIGIN      
        1 gaagcattca caatgaagcg tatgttgatc aacgcaactc agcgggaaga gttgcgcgtg
       61 gctatcgtcg atggccaaaa cctgtttgac ctcgatgtcg aaatcccgtc gcgcgagcag
      121 aagaagtcga acatctacaa gggacgcatc acccgcgtcg aacctagcct cgaagcctgt
      181 ttcgtcgaat atggcggcga gcggcacggc ttcctgcctt tgaaggaaat cggtcgcgag
      241 tacttcacgc ccggcgtcga cccgaacaag gcaggcatcc gcgaactgct gaaggaaggc
      301 cgcgaggtca tcgtccaggt cgacaaggaa gagcgtggca acaagggcgc cgccctgacc
      361 acgttcatct cgctggccgg gcgctacatg gtgctgatgc ccaactcgcc caccgccggc
      421 ggcgtgtcgc gccgcatcga gggcgacgac cgcgccgccc tcaaggaggc gatggacaag
      481 ctcgacatcc ccgacgacat gggcgtgatc atccgcaccg ccggcgtcgg ccgcgatgcc
      541 gaagagctgc agtgggacct cgactacctg ctcagcgtgt ggaaggcgat cgcggacgcc
      601 gcgctcacca agccggcgcc cttcctgatc taccaggaat cgcgcctgat catccgcgcg
      661 ctgcgcgact acatgcgccc ggacgtcggc gagatcctcg tcgacacgaa ggagatgtac
      721 gaggaagcgc gcgagttcgt cgagcaggtg atgccgcaca accagcgcaa gctcaagcac
      781 tacaccgacg acacgccgct gttcaaccgc ttccagatcg agtcgcagat cgagaacgcg
      841 tacgagcgca acgtgcgcct gccctccggc ggcgcgctgg tcatcgacca gaccgaggcg
      901 ctgaccgcgg tggacgtgaa ctcggcgcgc gccaccaagg gcggcgacat cgaggaaacc
      961 gcgttccaca ccaacctcga ggctgccgag gaagtggccc gccagctgcg cctgcgcgac
     1021 ctcggcggcc tggtggtcgt cgacttcatc gacatggcct cgagcaagca ccagcgcgag
     1081 gtcgagaacc gcctgcagaa cgcgctgcgc tcggaccgcg cgcgcgtcca gatcggccgc
     1141 atctccaagt tcggcctgct cgagatgagc cgccagcgcc tgcgcccgtc gctcggcgag
     1201 gccagccaga tcgtctgccc gcgctgcgaa ggacacggcc gcctgcgcag catcgagtcg
     1261 ctcgcgctgt cgatcatccg cgtcgccgaa gagcatgcga tgaaggacaa caccggccag
     1321 gtgctggtgc aggcgccggt cgagatcgcc aactacctgc tcaacgagaa gcgccgcgcg
     1381 ctgagcgaga tcgagcagcg ccacgacgcg ccgatcgtga tcgtcgccga cgaccagctc
     1441 gagaccccgc actacgaggt cacccgcatc cgcgagaacg aactcggcga ggaaaccagc
     1501 aagccgagct accagcgcgg cacgccccgc aagctcgcga ccatcgcgtt gaccaaggcc
     1561 aacctcaacg tgccggcggc accggcggtg accaacgtca agcccgcgca acccgcgccg
     1621 gtgcgcgagc cgcgcgagga aacgccggcg ccggcccccg cgccgatcgc gcctgcgccg
     1681 cagccggtgg cgaccggcgg cctggtgggg tggctgcgtg gcctgttcgc gccggccgcg
     1741 gcccccgccc ccgccgctcc ccagccgctg cgtggcgacg acggccgggg gcgcaacgac
     1801 cgccagcgcc gtgacggtcg cgatggccgc aacaagccgg ggcgcgacca gcgccgcgag
     1861 cgcgacgaac gccgcgggca gcaggcgcag gccggccagc cgcagcagca gaagcagcgc
     1921 gagcagcaga agccgtcgca gcagcaggcg cagcagaagc agaagccgca gcaaccgcag
     1981 aagcagaccc agcaggcgca gcagcagcag aagcagaagc cgcaggaaga gcgccagccg
     2041 caggtcgccc agcagccggc gcagcccagg ctgcagcagg tgccccagcc ccagaagccg
     2101 gcgcgtgcgc cggagacgga gcccgaggcg gccatggaca tgcctgtggt cgctccggtc
     2161 gcggtaccgg tcgaacatgc agccgtcgtc ccgcccggcg acgccgtcgc cacgccgtcg
     2221 gccgaacgcg ccgaggcgga cgcggacgcg gcgcaggccg ccgatgccgc gcagggcgaa
     2281 ggcggtcgtc gtcgtcgcgg ccgtcgcggt ggtcgccgcc ggcgccgcgg cgctggcgag
     2341 ggtgctactg ccggtgaggt cgcgccggag cacgaggacg gctccgacga ggacgtcgtg
     2401 gccgcgcagc gctcgcagcc ggaattcgat ttcgacgatg aggccgccga ggcttccgcc
     2461 gtcgcggcga ccttccggcc tgcgcccccc gcgccgccgg tcccggaagt gagggcgacg
     2521 cccgccgcgg aaccggtgcc cgctgccgtg ccgccgcccg cgcatgaaac ggccgtggcg
     2581 gacgtggcgc ctgcctccga gcccgctctg cccgcgttcg gcgcggacgg ctcgcgggac
     2641 gaagccgcgc cggcgttccc ggtcgaggat tctgtcggcc ccggcccaca catcgacgag
     2701 gcggagatcg ccgccaacga gctgccgtcg aacgagccgt cccccgccct cgagccggtg
     2761 agcttcgcgg ccgccgacag cgccgcgctg ggcgtgccgg agggctccgc ggccgacatc
     2821 gggcatgcac ccggcctgtt cgatgccctg cccgccccgg cgccggccga ggccgacccg
     2881 gccgaagcag cggcggacgc cgcctcgcag cttgccgcct ccggcaacgg cagcggggaa
     2941 gcacgcaacg tgtgagtcac ctcgatggcg gcggccaggt gccgtctcca tcctggggtc
     3001 gatgccgccg cccctgccgg cgcgcggctc cgttacagcg cgtgcgccgg gtctgcgagc
     3061 ccgtactgcg cgacgagccg
//
LOCUS       DATIQC010000482         3909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_101714, whole genome shotgun sequence.
ACCESSION   DATIQC010000482 DATIQC010000000
VERSION     DATIQC010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101714"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..206)
                     /locus_tag="VLM17_10370"
     CDS             complement(<1..206)
                     /locus_tag="VLM17_10370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65988.1"
                     /translation="MRPGHVAFRCNICGAWGEAPESLLRQRETPSCRVCGSNQRFRAL
                     VAALQDRLLGTVAPLRRQRPRRDLA"
     gene            complement(322..1263)
                     /locus_tag="VLM17_10375"
     CDS             complement(322..1263)
                     /locus_tag="VLM17_10375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017917018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HSR65989.1"
                     /translation="MNAAKTPPAAAKKRGLGRGLEALLGPKAAAEAPATLEAQPGESL
                     QTLPIDALTPGKYQPRRTMDQAKLAELADSIRAQGVIQPIVVRAIGAERGGKVYEIIA
                     GERRWRASRLAGLDQVPVVLRTVDDRTVVAMALIENIQREDLNPLEEAQSLQRLIDEF
                     DLTHAQAAEAVGRSRAAVSNLLRLLELPAEIRVLVETRALEMGHARALLTLTPQAAVA
                     LARQAAEHGWSVREVEHRVQQLGAGQVPSGAAKKAKPAKARPQADIATLERELSESLG
                     TRVNVLHGRGGKGRLVIHYGDLDSLEGVLERLRSPTA"
     gene            complement(1260..2069)
                     /locus_tag="VLM17_10380"
     CDS             complement(1260..2069)
                     /locus_tag="VLM17_10380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005995574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HSR65990.1"
                     /translation="MTARIIAIANQKGGVGKTTTAVNLAAALASTPMRVLLVDLDAQG
                     NATMGSGIDKRELAASTCDVLLEEQHADAAIVAAPEGFDLLPGNTDLTAAEIELMDEA
                     GREQRLKRALEPLRARYDFILIDCPPALSLLTLNALTAADSVLVPMQCEYYALEGLTA
                     LLQTIEALKQKLNPALEIEGVLRTMFDVRNNLANAVSGELVAHFGDKVFRTIVPRNVR
                     LAEAPSHGQSIVGYDKGSRGAVAYLGLAGEVIRHQRERQQAAARTPSETAA"
     gene            complement(2268..2912)
                     /gene="rsmG"
                     /locus_tag="VLM17_10385"
     CDS             complement(2268..2912)
                     /gene="rsmG"
                     /locus_tag="VLM17_10385"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005995473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HSR65991.1"
                     /translation="MADALPEVLPELRGELEAGLVALGLDTALSAPLLAYLALLARWN
                     ATYNLTAIRDPREMLTKHLLDSLAMQAFVADGTLADLGTGPGLPGIPLAIARPGLRVT
                     LVESNGKKARFLRAAVRELGLPNAEVAESRIEGLDRPGAFDQITARALATLPQIIAFG
                     GPLLKRGGRLLAMKGTRPDDEIAELPDGWWLQSVQPLTVPGLAAERHLVIVARD"
     gene            complement(2912..>3909)
                     /locus_tag="VLM17_10390"
     CDS             complement(2912..>3909)
                     /locus_tag="VLM17_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HSR65992.1"
                     /translation="MKPVYDRARGDRQRVVYAEGEEETVLRAVQTVIDEELASPILIG
                     RPEVIETRISRLGLRMRAGVDFELTNINSDPRFDSYWQQYHALTERRGVTPAAAKNLM
                     RSRPTLIAALMVERGEADAMICGLVGRFHKKLGYLRSIFDFDKGVQGTAAMTAVINER
                     GVWFFLDTHVQLDPSAGQIAESTLQASYRLKLFGIEPKVALLSHSNFGSHDDASARKM
                     REALELIRARAPRLEIDGEMMADTAWDDELRHRIFPNTLLKGRANLFVMPNLDAANIT
                     YNMVRVMTDGVAIGPILMGLDQPAHVLTPSSTPRRVVNMTAIAAVEAQIRKAQRG"
BASE COUNT          499 a         1372 c         1449 g          589 t
ORIGIN      
        1 gcgaggtcgc ggcgcggccg ctgccggcgc aacggcgcga cggtgccgag caggcggtcc
       61 tgcagcgccg ccaccagcgc gcggaagcgc tggttcgacc cgcagaccct gcagctcggc
      121 gtctcgcgct ggcgcagcag cgattccggc gcttcgcccc aggcgccgca gatgttgcag
      181 cggaacgcga cgtggcccgg acgcacgcgg tccggcggcg tggtcagcgc tgcccgcact
      241 ccgagcagcc gccgacgcag cctccccgcg gcccggcgca tggagtcgcg cgcccagcgc
      301 gccgacgcgc cggccatcgg atcaggcggt cgggctgcgc aggcgttcga gcacgccttc
      361 cagcgagtcg aggtcgccgt aatggatcac cagccgcccc ttgccgccgc gcccgtggag
      421 gacgttgacg cgggtgccga gcgattcgga cagctcgcgc tcgagcgttg cgatgtcggc
      481 ctgcgggcgc gccttcgccg gcttcgcctt cttcgccgcg ccgctgggca cctggccggc
      541 gccgagctgc tgcacccggt gctcgacctc gcgtaccgac cagccgtgct cggccgcctg
      601 ccgcgccagc gcgaccgcgg cctgcggcgt gagggtgagc agcgcgcggg cgtggcccat
      661 ctccagcgcg cgggtctcga ccagcacccg gatctccgcc ggcagctcga gcaggcgcag
      721 caggttggac accgccgcgc gcgagcgacc gaccgcttcg gcggcctgcg cgtgggtgag
      781 gtcgaactcg tcgatcaggc gctgcaggga ctgcgcctcc tccagcggat tcaggtcctc
      841 gcgctggatg ttctcgatca gcgccatcgc cacgaccgtg cggtcgtcga cggtgcgcag
      901 caccaccggc acctggtcca ggccggccag gcgcgaggcg cgccagcggc gttcgccggc
      961 gatgatctcg tagaccttgc cgccgcgctc ggcgccgatg gcgcgcacca cgatcggctg
     1021 gatcacgccc tgcgcgcgga tcgaatcggc cagctcggcg agcttggcct ggtccatcgt
     1081 gcggcgcggc tggtacttgc ccggggtcag cgcgtcgatc ggcagggtct gcagcgattc
     1141 gccgggctgc gcctcgagcg tggccggcgc ctccgcggcg gccttcggac cgagcagcgc
     1201 ctccaggccg cggccgagcc cccgcttctt cgcggcggcg ggcggggtct tggcggcgtt
     1261 catgcggcgg tctccgaagg cgtgcgcgcg gccgcctgct ggcgctcgcg ctggtggcgg
     1321 atcacctcgc cggccaggcc gaggtaggcg accgcgccgc ggctgccctt gtcgtagccg
     1381 acgatgctct ggccgtggct cggcgcctcg gccaggcgca cgttgcgcgg cacgatggtg
     1441 cggaacacct tgtcgccgaa gtgcgcgacg agctcgcccg acaccgcgtt ggcgaggttg
     1501 ttgcgcacgt cgaacatggt ccgcagcacc ccctcgatct ccagcgccgg attgagcttc
     1561 tgcttgagcg cctcgatggt ctgcaagagc gcggtcaggc cctccagcgc gtagtactcg
     1621 cactgcatcg ggaccagcac gctgtcggcg gcggtgagcg cgttcagggt cagcagcgac
     1681 agcgccggcg ggcagtcgat gaggatgaag tcgtagcggg cgcgcagcgg ctcgagcgcg
     1741 cgcttcaggc gctgctcgcg cccggcctcg tccatcagct cgatctcggc cgcggtgagg
     1801 tcggtgttgc cgggcagcag gtcgaagcct tcgggcgccg cgacgatggc ggcgtcggcg
     1861 tgctgctctt ccagcagcac gtcgcaggtg gacgcggcga gctcgcgctt gtcgatgccg
     1921 ctgcccatgg tcgcgttgcc ctgggcatcg aggtcgacca gcagcacgcg catcggcgtg
     1981 ctggcgagcg cggcggcgag gttgaccgcg gtggtggtct tgccgactcc acctttctgg
     2041 ttggcgatgg cgatgatgcg ggccgtcacg cgcacgctcc gacagggatg ccctggacaa
     2101 aggaaagccg gccgagggcc gggcttggga ttatgcgtta tcccggccac ggggcgaccg
     2161 gaggtggcgg ggcaaggccg ttcatccttc gacaggctca ggacgaacgg cccccgatcc
     2221 gttcgtggtg agcctgtcga accacgaaat gcagcgacga cgcgggctca gtcgcgggcg
     2281 acgatcacca ggtggcgttc ggccgccagg cccggaaccg tgagcggctg cacgctttgc
     2341 agccaccagc cgtccggcag ctccgcgatc tcgtcgtccg ggcgcgtgcc cttcatcgcc
     2401 agcaggcggc cgccgcgctt cagcaggggg cccccgaacg cgatgatctg cgggagcgtg
     2461 gcgagcgcgc gcgcggtgat ctggtcgaag gcgcccggcc ggtcgagccc ctcgatgcgc
     2521 gattcggcga cttcggcgtt gggcaggccc agttcgcgca ccgcggcgcg caggaagcgc
     2581 gccttcttgc cgttcgactc gaccagggtc acccgcaggc ccggccgggc gatcgccagc
     2641 gggatgccgg gcaggccggg gccggtgccg aggtcggcga gggtgccgtc ggcgacgaac
     2701 gcctgcatcg ccagcgaatc gagcaggtgc ttggtcagca tctcgcgcgg gtcgcggatc
     2761 gcggtcaggt tgtaggtcgc gttccagcgc gccagcaggg cgaggtaggc gagcagcggc
     2821 gccgacagcg ccgtgtcgag gccgagcgcg acgagcccgg cctcgagttc gccgcgcagt
     2881 tcggggagca cttccggaag cgcgtcggcc atcagccgcg ctgcgccttg cggatctgcg
     2941 cctcgacggc ggcaatcgcg gtcatgttga cgacccggcg cggcgtcgag gacggcgtga
     3001 ggacgtgcgc cggctggtcc aggcccatca ggatcgggcc gatcgccacc ccgtcggtca
     3061 tcacccgcac catgttgtag gtgatgttgg ccgcgtcgag gttcggcatc acgaacaggt
     3121 tggcgcgccc cttgagcagc gtgttcggga agatgcggtg gcgcagctcg tcgtcccagg
     3181 cggtgtcggc catcatctcg ccgtcgatct ccagcctggg cgcgcgcgcg cggatcagtt
     3241 ccagcgcctc gcgcatcttg cgcgcgctgg cgtcgtcgtg gctgccgaag ttggaatgcg
     3301 acagcagcgc gaccttgggt tcgatgccga acagcttgag gcggtagctc gcctgcagcg
     3361 tgctctcggc gatctgcccg gccgacgggt cgagctgcac gtgggtgtcg aggaagaacc
     3421 aaacgccgcg ctcgttgatc accgcggtca tcgccgcggt gccctgcacg cccttgtcga
     3481 agtcgaagat gctgcgcagg tagccgagct tcttgtggaa gcgcccgacc aggccgcaga
     3541 tcatcgcgtc cgcctcgccg cgctcgacca tcagcgcggc gatcagggtc gggcgcgagc
     3601 gcatcaggtt cttggccgcc gccggggtca cgccgcggcg ctcggtcagc gcgtgatact
     3661 gctgccagta gctgtcgaag cgcgggtcgg agttgatgtt ggtcagctcg aagtcgacgc
     3721 cggcgcgcat gcgcaggccg agccggctga tccgtgtttc gatcacctcg gggcggccga
     3781 tcaggatcgg ggacgcgagc tcctcgtcga tcaccgtctg caccgcgcgc agcaccgtct
     3841 cctcctcgcc ttcggcgtac accacgcgct ggcggtcgcc gcgggcgcgg tcgtacaccg
     3901 gcttcatga
//
LOCUS       DATIQC010000483         4168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_313936, whole genome shotgun sequence.
ACCESSION   DATIQC010000483 DATIQC010000000
VERSION     DATIQC010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4168
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313936"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..541)
                     /locus_tag="VLM17_10395"
     CDS             complement(<1..541)
                     /locus_tag="VLM17_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit a"
                     /protein_id="HSR65993.1"
                     /translation="MAAQAATAPATGGSTEYINHHLTFWQVSVGNGDFMKLNVDTLIF
                     TLLLSALFLFFFVRSARKATAGVPGKFQTFVEIVVGFVDGLVRETFHGRSKLIAPLSI
                     TIFCLVFLMNFMDMVPVDFLPWAWMSGHAAAGMDPEHAYLRVVPTADLNTTFGLSLAV
                     FLLIQVFGIAHKGVGGFTRE"
     gene            complement(566..922)
                     /locus_tag="VLM17_10400"
     CDS             complement(566..922)
                     /locus_tag="VLM17_10400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR65994.1"
                     /translation="MAIEVAAAGVVAIAFLFQGWRSAAGAAVGGLAMAAGHALAARVS
                     FAGGIQPARMAFARLLLGVMGKWLVALGVVALALEAWRLPPLPVVAGLVAGLLAYLVG
                     LNLRHARQRQAPPQQD"
     gene            complement(1285..3120)
                     /gene="lpdA"
                     /locus_tag="VLM17_10405"
     CDS             complement(1285..3120)
                     /gene="lpdA"
                     /locus_tag="VLM17_10405"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017114723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HSR65995.1"
                     /translation="MASRIEVKVPDIGGYDDVPVIEVLVAVGDTVKVDQGLATLESDK
                     ATMEVPSSAAGKVVELKVKVGDKVSEGAVIAVLEAEGEGSAPSPAPAGEGRDGGAPKA
                     SASTHAAPPPQPSPASGGGSQGRAQATPAPQAAAGSGRQADIECAMVVIGAGPGGYTA
                     AFRAADLGLDTVLVERHATLGGVCLNVGCIPSKALLHAAAVIDEAAHAKSYGVEFGAP
                     KIALDALRAYKDKVVGQLTKGLATMAKQRKVSTVTGVARFVSPNELEITGEGGTQLLR
                     FQHCIIAAGSQALKLPGFPWDDPRVMDSTDALDLADIPKTLLVVGGGIIGLEMATVYR
                     ALGSQVTVVELADQLMPGADADLVKPLAARLKKQGVAVHLKTKVVEAKAQKNGITCTF
                     DGASIPEGKSYDRVLVSVGRVPNGGKLDAGKAGVAVSERGFIAVDAQMRTNVPHIFAI
                     GDLVGQPMLAHKATHEGRLAAEVAAGERKAWVARVIPSVAYTDPEIAWVGVTEAEAKA
                     KGLQVGVGKFPWAASGRAIGLDRTEGFTKLVFDEATHRVIGGGIVGVHAGDLIAEVAL
                     AIEMGAEAADIGHTIHPHPTLGESVGMAAEVYEGTITDLYLPKKA"
     gene            complement(3135..>4168)
                     /locus_tag="VLM17_10410"
     CDS             complement(3135..>4168)
                     /locus_tag="VLM17_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007974307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HSR65996.1"
                     /translation="RLAQASIAQQSATGTHTAPLGAGQPLQRFDADAVLPDKVPYASP
                     AVRLFARELGVDLAQVPGSERAGRITREDVQKFVKGALQGGVPAAAGGGGGGLSLLPW
                     PKVDFARFGPVETRELTRIQKLSGANLARNWAMIPHVTQHDDADITELEALRVALNAE
                     QAKQKDGAKLTMLAFLIKASVAALQKFPTFNASLDPDGTTLTLKQYFHIGFAADTPNG
                     LVVPVIRDCDRKGVLEIARETSELAARAREGKLSPADMQGGCFSISSLGGIGGTSFTP
                     IVNAPEVAILGVSKAAMKPVWDGKAFQPRLVLPLSLSYDHRVIDGAAAARFAAFLAQL
                     LGDMRRALL"
BASE COUNT          590 a         1488 c         1452 g          638 t
ORIGIN      
        1 tttcgcgggt gaagccgccg acgcccttgt gggcgatgcc gaacacctgg atcagcagga
       61 acaccgccag cgacaggccg aaggtggtgt tgaggtcggc ggtcggcacc acgcgcaggt
      121 aggcgtgctc cgggtccatg ccggcggcgg cgtggccgct catccacgcc cacggcagga
      181 agtccaccgg caccatgtcc atgaagttca tcaggaacac gaggcagaag atggtgatcg
      241 acagcggcgc gatcagcttg ctgcggccat ggaaggtctc gcgcaccagg ccgtcgacga
      301 agccgaccac gatctcgacg aaggtctgga acttgcccgg cacgccggcg gtcgccttgc
      361 gcgcgctgcg cacgaagaag aacaggaaca gcgccgacag cagcaaggtg aagatcaacg
      421 tgtcgacgtt gagcttcatg aagtcgccat tgcccacgct cacctgccag aaggtcaggt
      481 ggtggttgat gtattcggtc gagccgccgg ttgccggggc ggtcgcggcc tgtgctgcca
      541 tggctgtcgc ttcaacgctc acgtttcaat cctgctgcgg gggtgcttgc cgttgacgtg
      601 catgacgcag attcagtccc accaggtagg ccagcaagcc ggccaccagc cccgccacca
      661 ccggaagcgg cggcaggcgc caggcttcca gcgcgagcgc gacgacgccc agcgccacca
      721 gccatttccc catcacgccg aggagcaggc gggcgaaggc catccgtgcc ggctggatcc
      781 cgccggcgaa ggacaccctc gccgccagcg catgacccgc cgccatcgcc agtccaccga
      841 ccgccgcgcc cgccgcggac cgccacccct ggaacaggaa ggcgatggcg accactcctg
      901 ccgcggcgac ctcgatggcc accgcgcgcg ctgctgcgct gcgacctgcg gcgatgggat
      961 cgtgcacggt aggcggacca cggggggatg ggctgaaaac ggccctgcga agccgcaaaa
     1021 gtatagcagc ggcccgaatt tgcgggcaac cgcccgcagg cgttccggcc tgaacagggc
     1081 gccgcgtcac gccttcgcgc gcggcaaccg gcgatggcgg gcgcgccgcg cgggcgaccg
     1141 gaacctttgc ccggggagcc ggtcagtctt cccgcgacct gccgcccttc ctcgtcgacc
     1201 cgcggcagtc cgaggagccc cgaccatccg gtcggggctt cgccttttcc ccgcccgccc
     1261 cgcaggcggg agccggatcc cggctcaggc cttcttcggc aggtacaggt cggtgatggt
     1321 gccttcgtac acttcggccg ccatgcccac cgattcgccc aaggtcggat gcgggtggat
     1381 ggtatggccg atgtcggcgg cctcggcgcc catctcgatc gcgagcgcga cctcggcgat
     1441 gaggtcgccc gcgtgcacgc cgacgatgcc gccgccgatc acgcgatggg tcgcctcgtc
     1501 gaacacgagc ttggtgaagc cctcggtgcg gtcgaggccg atcgcgcgac ccgaggcggc
     1561 ccacgggaac ttgcccacgc cgacctgcag gcccttggcc ttcgcttccg cttcggtcac
     1621 gccgacccag gcgatctccg gatcggtgta cgcgaccgac ggaatgacgc gcgcgaccca
     1681 tgccttcctt tcgcccgcgg cgacttccgc ggcgagccgg ccctcgtgcg tcgccttgtg
     1741 cgcgagcatc ggctggccga cgaggtcgcc gatcgcgaag atgtgcggca cgttcgtgcg
     1801 catctgcgcg tcgaccgcga tgaagccgcg ctcgctcacc gcgacgccgg ccttgcccgc
     1861 gtcgagcttg ccgccgttcg ggacgcgacc caccgacacc agcacgcggt cgtagctctt
     1921 gccttccggg atgctcgcgc catcgaacgt gcacgtgatg ccgttcttct gcgccttcgc
     1981 ctcgaccacc ttcgtcttca ggtgcacggc gacgccctgc ttcttcaggc gtgcggccag
     2041 cggcttgacc aggtcggcgt cggcgcccgg catcagctgg tcggcgagtt cgacgacggt
     2101 gacctggctg ccgagcgcgc ggtacaccgt ggccatctcg aggccgatga tgccgccgcc
     2161 gaccacgagc agcgtcttcg ggatgtcggc caggtcgagc gcgtcggtcg agtccatcac
     2221 gcgcgggtcg tcccagggga agcccggcag cttcagcgcc tggctgccgg cggcgatgat
     2281 gcagtgctgg aagcgcagca gctgcgtgcc gccctcgccg gtgatctcca gttcgttcgg
     2341 cgagacgaag cgggcgacgc cggtgacggt gctcaccttg cgctgcttcg ccatcgtcgc
     2401 caggcccttg gtgagctggc cgacgacctt gtccttgtag gcgcgcagcg cgtcgagcgc
     2461 gatcttcggt gcgccgaact cgacgccgta gctcttcgcg tgcgcggcct cgtcgatcac
     2521 cgcggccgca tgcagcaacg ccttcgacgg gatgcagccg acgttgaggc agacgccgcc
     2581 gagcgtggcg tggcgttcga ccaggaccgt gtcgaggccg aggtcggcgg cgcggaacgc
     2641 ggcggtgtag ccgccggggc cggcgccgat cacgaccatc gcgcactcga tgtcggcctg
     2701 gcggccgctg ccggctgcgg cctgcggtgc aggcgtggct tgcgcgcgtc cttgactccc
     2761 tcccccgctc gcgggggagg gttggggtgg gggcgccgcg tgcgtggaag ccgacgcctt
     2821 cggcgcgccc ccatcccggc cttcccccgc tggcgcaggg gaaggagcag agccctcgcc
     2881 ttccgcttcg agcacggcga tcaccgcgcc ctcgctgacc ttgtcgccca ccttgacctt
     2941 gagctcgacc accttgccgg cggcgctcga cggcacttcc atcgtcgcct tgtcggattc
     3001 cagcgtggcc aggccctggt cgaccttgac ggtgtcgccg accgcgacca gcacctcgat
     3061 caccggcacg tcgtcgtagc cgccgatgtc gggaaccttc acttcgatgc gcgaagccat
     3121 gcgtgcgcct cctctcagag cagtgcccgg cgcatgtcgc cgagcagctg cgcgaggaac
     3181 gcggcgaaac gcgcggcggc ggcaccgtcg atcacgcggt ggtcgtagct gagcgaaagc
     3241 ggcagcacca ggcgcggttg gaaggccttg ccgtcccaca ccggcttcat cgccgccttc
     3301 gacacgccga ggatggcgac ttccggcgca ttgacgatcg gcgtgaacga cgtaccgccg
     3361 atgccgccga gcgagctgat cgagaagcag ccgccctgca tgtccgccgg cgacagcttg
     3421 ccctcgcgcg ccctggcggc gagctcggag gtttcgcgcg cgatctcgag cacgcccttc
     3481 ctgtcgcagt cgcggatcac cggcaccacc aggccgttcg gcgtgtcggc ggcgaagccg
     3541 atgtggaagt actgcttcag cgtcagcgtc gtgccgtcgg ggtcgagcga ggcgttgaac
     3601 gtcgggaact tctgcagcgc ggcgaccgag gccttgatca ggaaggcgag catggtcagc
     3661 ttcgcaccgt ccttctgctt ggcctgctcg gcgttgaggg cgacgcgcag cgcttccagc
     3721 tcggtgatgt cggcgtcgtc gtgctgggtg acgtgcggga tcatcgccca gttgcgcgcg
     3781 aggttggcgc ccgacagctt ctggatgcgg gtgagctcgc gcgtctcgac cgggccgaac
     3841 ctggcgaagt cgaccttcgg ccacggcagc aggctcaagc cgccgccacc gccgcccgct
     3901 gccgcgggta cgccgccctg cagcgcgccc ttgacgaact tctgcacgtc ctcgcgggtg
     3961 atccggccgg cgcgttcgct gccgggcacc tgcgcgaggt cgacgccgag ctcgcgcgcg
     4021 aacaggcgca ccgcggggct ggcgtacggc accttgtcgg gcagcaccgc gtcggcgtcg
     4081 aagcgctgca gcggctggcc ggcgccgagc ggcgcggtgt gcgtgccggt cgccgactgc
     4141 tgcgcgatcg aggcctgcgc gaggcggt
//
LOCUS       DATIQC010000484         1955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_207995, whole genome shotgun sequence.
ACCESSION   DATIQC010000484 DATIQC010000000
VERSION     DATIQC010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_207995"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1199)
                     /locus_tag="VLM17_10415"
     CDS             complement(<1..1199)
                     /locus_tag="VLM17_10415"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HSR65997.1"
                     /translation="MTGALAALQFGFAPALATALLQSLWQDTLLAIGAWCALAALARA
                     GAALRHAVAMAFLLAMVAVPAWTFAEFWQQAPARINAGWLPALTAPTLDAAHGVFAQR
                     SNPATALLALLWLAGVGAMLLRRFGGWRVLASLDRRPFEPLPADWQRRVDHLRGALRI
                     GRRVAVRLSSDVLTPFTARLLRPVVWLPLSLLAQLPREQVEALLAHELAHIARLDWLW
                     NGVQCVVEALLFFHPAAWWLGRRIRIEREHACDDRAVAACGDAIALAEALAQLERQRS
                     PAPRLLLAAQGGSLMERITRLLPATTSRSRWGARTGAGVLLAAGTLVLAQLAFGGARP
                     SIHITATTLGTLQPGDSREIVADGIDGQRYYRADVDAQGRVTEVYRENGQARPIDPAA
                     RHWIASVA"
     gene            complement(1196..1588)
                     /locus_tag="VLM17_10420"
     CDS             complement(1196..1588)
                     /locus_tag="VLM17_10420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017462971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HSR65998.1"
                     /translation="MPAAPHPTEGELAILRTLWARKAPMTVREVHAELSKGKDTAYTT
                     VLKMLTIMADKGLVHRYESERSQAYTPVHPEPVVQRSLVRDLVRRAFAGSAASLVQRA
                     LDDGVASDRELDEIARLIAEAKAKRAAK"
BASE COUNT          280 a          740 c          700 g          235 t
ORIGIN      
        1 gccaccgacg cgatccagtg gcgcgccgcg ggatcgatcg ggcgcgcctg gccgttttcc
       61 cggtagacct cggtgacccg gccctgggcg tcgacgtcgg cgcggtagta gcgctgcccg
      121 tcgatgccgt cggcgacgat ctcgcgcgag tcgccgggct ggagcgtgcc cagggtggtg
      181 gcggtgatgt ggatcgacgg ccgcgcgccg ccgaaggcga gctgggcgag gaccagcgtg
      241 ccggccgcga gcagcacgcc ggcgccggtg cgcgcgcccc agcgtgagcg cgacgtcgtc
      301 gccggcaaca gacgggtgat gcgttccatg agcgagcctc cttgggccgc gagcagcagg
      361 cggggcgcgg gcgaccgctg gcgctcgagt tgcgcgagcg cctcggccag cgcgatggcg
      421 tccccgcagg ccgccaccgc acgatcgtcg caggcgtgtt cgcgctcgat ccggatgcgc
      481 cggccgagcc accacgccgc ggggtggaag aacagcagcg cctcgaccac gcactgcacg
      541 ccgttccaca gccagtccag ccgcgcgatg tgcgcgagtt cgtgcgcgag cagcgcttcg
      601 acctgttcgc gcggcagctg cgccagcagc gacagcggca gccacaccac cggccgcagc
      661 agccgcgcgg tgaacggcgt cagcacgtcc gacgacagcc gcaccgccac ccgccgtccg
      721 atgcggagcg cgccgcgcag gtggtcgacg cggcgctgcc agtccgcggg cagcggctcg
      781 aacggccgcc ggtcgagcga ggccagcacg cgccagccgc cgaagcggcg cagcagcatc
      841 gcgccgacgc cggcgagcca cagcaacgcg agcagggcgg tcgccgggtt cgagcgctgc
      901 gcgaacacgc cgtgcgccgc gtccagggtc ggcgcggtca gcgccggcag ccagccggcg
      961 ttgatgcgcg ccggcgcctg ctgccagaac tccgcgaacg tccacgccgg caccgccacc
     1021 atcgccagca ggaaggccat cgccaccgca tggcgcagtg ccgcgcccgc ccgcgccagc
     1081 gccgccagcg cgcaccaggc gccgatcgcc agcagcgtgt cctgccacag cgactgcagc
     1141 agcgcggtcg ccagcgccgg ggcgaagccg aactgcaggg cggcgagcgc accggtcatt
     1201 tcgccgcccg cttcgccttc gcctcggcga tcagccgcgc gatctcgtcg agctcgcggt
     1261 cgctggcgac gccgtcgtcg agcgcgcgct gcaccaggct cgccgccgac ccggcgaacg
     1321 cgcgccgcac caggtccctg accagcgagc gctgcaccac gggctccgga tgcaccggcg
     1381 tgtacgcttg gctgcgctcg gattcgtatc gatgcaccag gcccttgtcg gccatgatcg
     1441 tcagcatctt cagcaccgtc gtgtaggcgg tgtccttgcc cttcgacagc tcggcgtgca
     1501 cctcgcgcac ggtcatcggc gccttgcgcg cccacagcgt gcgcaggatg gcgagctcgc
     1561 cttcggtggg atggggggca gccggcatcg ggcatcctcg gtgtctacgc cgccattagt
     1621 acgaaacgat tagtagatgt caaccaccgt ccgtcggtca cgcttcggca cgcgcgccgc
     1681 gcgcacggac cgcggtcggc ggcgggccgc ccgggccgcg ctggtagaat cggcggttcc
     1741 cgaccccacg aaaaaacgcg gcgtttggcc gcgtcggagc cgcatcgatg aactggctga
     1801 acgagctgct gcacaacgac ccggatcccg ccgaatcgcg cgagtggatc gagtccatca
     1861 aggccgtcat cgaccacgac ggcccgcagc gcgcgcacca gctgctcgag ggcatggtcg
     1921 agctcacccg ccgcgccggc gcgcacctgc cgttc
//
LOCUS       DATIQC010000485         3792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_702472, whole genome shotgun sequence.
ACCESSION   DATIQC010000485 DATIQC010000000
VERSION     DATIQC010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_702472"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..1588
                     /gene="purB"
                     /locus_tag="VLM17_10425"
                     /pseudo
     CDS             221..1588
                     /gene="purB"
                     /locus_tag="VLM17_10425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156796.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
     gene            1592..2830
                     /locus_tag="VLM17_10430"
     CDS             1592..2830
                     /locus_tag="VLM17_10430"
                     /EC_number="1.14.11.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043687 - post-translational protein
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HSR65999.1"
                     /translation="MARRPARKSATPAGTVPFEVDAAGRPPLGMAPADFLRDYWQKRP
                     LLIRNAFPGFVSPLEPEDLAGLACEEAALSRIVLHDRADDRWTLRHGPFAEEEFPGMP
                     RQDWSLLVQDVDKWDADVAALLQRFDFLPRWRIDDVMVSFAAPGGSVGAHVDQYDVFL
                     LQAEGHRRWQVDASQALGRGKPPLDVRDDVELRLLREFQPTHDWVLGPGDMLYLPPGV
                     PHHGVAEDACLTFSVGMRAPSAAELLGDFADTLAADADDALRYRDPDLAPPADPNEID
                     AAAMERVVEALNLLRMNDADRLGDWFGRFITVYRSAGMVAPAPEAPSRIELEWQLDHG
                     LRLLRHPLSRMAWRKAARGARLYVSGRDYVLPAKDARLLAGAGEVDGRVYGALSQAGR
                     DAVVALLGEGHYRLPDDEEE"
     gene            2833..3741
                     /locus_tag="VLM17_10435"
     CDS             2833..3741
                     /locus_tag="VLM17_10435"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006377019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR66000.1"
                     /translation="MAAPPAFRVEQVDYAGALPGLRAVRERVFVQEHGLPAAVEKDEL
                     DPLSTHVLACDAQGTAVGTGRLTPERRIGRMAVLPQWRGRGVGSAVLAALLHEAQARG
                     WREVALHAHGDAVAFYLRHGFAPVGDGFIEAGIAQQVMARPLGLRAIEDRDAARAAAG
                     ALIRCARRGLSVYTRDLDPGLFDDAGVLDALRGFATAGRGGEARFLLQDAAAPQRAHS
                     PLLALAQRLPSAFLFREVTDPVDRAYPSAFIANDAGGFYFRALGHRFDGEADLHAPGR
                     ARQLRMAFDAVWERARPVGEYRALGL"
BASE COUNT          505 a         1411 c         1342 g          534 t
ORIGIN      
        1 ggaaaccggg aaattgtcga cggcgcgctg ggtctgcgcg ccccacagcg cgtcggccgg
       61 cacctgcagt gcgcccatgc tgtcgtgctc ggtgcggtac ccggcggatt tcctcgcggc
      121 cacgctgcct cccgtgtgcg cgggacggcc ccgcggcgcg accggagcat acgccgccga
      181 ccgtttagaa ttgcgcgcgt cccgcctgcc ccgcccgacc atgtccgacg cccagctgct
      241 tgccctgtcc ccgctcgatg gccgctatgc cggcaagatc gatgctttgc gcccgatctt
      301 ctctgagttc ggcctgatca aggcgcgggt cacggtcgag gtcgagtggc tgctggcgct
      361 ggccggcgag cccggcatcg tcgagctcaa gcccttcccg cccgccgccg ccgcgcgcct
      421 gcgcgcgctg gccgagtgac tgtcgaccgc cgacgcggcg cgggtgaagg agatcgagcg
      481 caccaccaac cacgacgtca aggcggtcga gtacctgatc aaggaacggc tgaaggacga
      541 cgccgagctc ggcccggcgc tggagttcgt gcacttcgcc tgcaccagcg aggacatcaa
      601 caacctcagc tacgcgctga tgctgcgcgc cggccgcgac cgcgtggtgt tgccgaagct
      661 cgacgccctg atcgcaaccc tgcgcacgat ggcgcacgcg cacgccgcgc tgccgatgct
      721 ctcgcgcacc cacggccaga cggcgtcgcc caccaccgtc ggcaaggagc tggccaacgt
      781 cgtcgcccgc ctggagcgcc agcgcggcgt gctcgcggcc ctgccgatgc cgggcaagat
      841 caacggcgcg gtcggcaact acaacgcgca cctggccgcc tatcccgacg tggactggac
      901 ggcgttctcc cggcgcttcg tcgaatcgct gggcctggcc tggcagccgt acacgaccca
      961 gatcgaaccg cacgacggca tcgccgagct gtgcgacgcg atgaagcgca tcgacaccat
     1021 cctcgtcgac ctctgccgcg acgtctgggg ctacatctcg ctcggctact tcaggcaggc
     1081 ggtgaaggcc ggcgaagtcg gcagttcgac catgccgcac aaggtcaacc cgatcgactt
     1141 cgagaacgcg gaaggcaact tcggcatcgc caatgcgctg ttcgagcact tcgccgccaa
     1201 gctgccggtc agccgctggc agcgcgacct caccgactcg accgtgctgc gcgcgctcgg
     1261 caccgcgttc ggccatgcgc tgatcggatt cgacgcgctg gcgcgtggcc tgggcaagct
     1321 cagcgctaac ccggagcgcc tcgctgccga cctcgacgcg gcctgggaag tgctggccga
     1381 ggcggtgcag acggtgatgc ggcgccacgg cctgccgaac ccgtacgagc aattgaaggc
     1441 gctgacccgc ggccatggca tcaccgaagc ctcgatgcag gccttcatcg ccggcctgga
     1501 cctgccgcgc gacgacaagc agcgcctgct ggcgatgacc ccggcgacct acaccggcct
     1561 cgccgagcgc ctcgcgcggg agatctgagc gatggccagg cggcccgcgc gcaagtccgc
     1621 cacgccggcc ggcacggtgc cgttcgaggt ggacgccgcc ggccgtccgc cgctgggcat
     1681 ggcaccggcg gatttcctgc gcgattactg gcagaagcgc ccgctgctca tccgcaacgc
     1741 gtttcccggc ttcgtgtcgc cgctggagcc cgaggacctc gccggcctcg cctgcgagga
     1801 ggccgcgctg tcgcgcatcg tgctgcacga ccgcgccgac gaccgctgga cgctgcgcca
     1861 cggaccgttc gccgaggagg aattccccgg catgccgcgc caggactggt cgctgctggt
     1921 gcaggacgtc gacaagtggg acgccgacgt cgccgcgctg ctgcagcgtt tcgatttcct
     1981 gccgcgctgg cggatcgacg acgtgatggt ctcgttcgcc gcgcccggcg gctcggtcgg
     2041 cgcacacgtc gaccagtacg acgtgttcct gctgcaggcg gagggccacc ggcgctggca
     2101 ggtcgacgcc tcgcaggcgc tgggccgcgg caagccgccg ctggacgtcc gcgacgacgt
     2161 cgagctcagg ctgctgcgcg agttccagcc gacccacgac tgggtgctcg gccccggcga
     2221 catgctctac ctcccgcccg gcgtgccgca ccacggcgtc gccgaggacg cgtgcctgac
     2281 gttttccgtc ggcatgcgcg cgccgtccgc ggccgaactg ctcggcgact tcgccgacac
     2341 gctcgcggcc gacgccgacg acgcgttgcg ctaccgcgac cccgacctcg cgccgccggc
     2401 cgatccgaac gagatcgacg ccgccgcgat ggaacgcgtg gtcgaggcgc tcaacctgct
     2461 gcgcatgaac gacgccgacc ggctcggcga ctggttcgga cgtttcatca ccgtctaccg
     2521 cagcgcgggc atggtggcgc cggcaccgga ggcgccctcg cgcatcgagc tcgaatggca
     2581 gctggaccac ggcctgcgcc tgctgcgcca tccgctctcg cgcatggcgt ggcgcaaggc
     2641 agcacgcggc gcgcggctgt acgtgagcgg gcgcgactac gtcctgccgg cgaaggacgc
     2701 gcgcctgctc gccggcgcgg gcgaagtcga tggccgcgtg tacggcgcgt tgtcgcaggc
     2761 cggacgcgat gccgtcgtcg ccctgctcgg cgagggccac taccgcctgc ccgacgacga
     2821 ggaggagtga gcatggccgc gccgcccgcc ttccgcgtcg agcaggtgga ctacgcgggc
     2881 gcgctgcccg ggctgcgcgc ggtgcgcgag cgcgtgttcg tgcaggaaca cgggctgccg
     2941 gcggcggtcg agaaggacga gctcgacccg ctcagcacgc acgtgctggc gtgcgatgcc
     3001 cagggcacgg cggtggggac cggccgcctc acgcccgagc gccggatcgg gcgcatggcg
     3061 gtgctgccgc aatggcgcgg ccgcggcgtc ggcagcgccg tgctcgcggc gctgctgcac
     3121 gaggcgcagg cgcgcggctg gcgcgaggtg gcgttgcacg cgcacggcga cgccgtcgcg
     3181 ttctacctgc ggcatggctt cgcaccggtc ggcgacggct tcatcgaggc cggcatcgcg
     3241 cagcaggtga tggcccggcc gctcggcctg cgcgcgatcg aggatcgcga tgccgcccgc
     3301 gcggcggcgg gcgcgctgat ccgctgcgcg cgccgcgggc tgtcggtgta cacacgcgac
     3361 ctcgacccag gcctgttcga cgatgcgggc gtgctcgatg cgctgcgcgg gttcgccacc
     3421 gccggccgcg gcggcgaggc gcgcttcctg ctgcaggacg ccgccgcgcc gcagcgcgcg
     3481 cattcgccgc tgctcgcgct ggcgcagcgg ctgccgagcg cgttcctgtt ccgcgaggtg
     3541 accgatccgg tcgaccgcgc ctatccgtcc gccttcatcg ccaacgatgc gggcggcttc
     3601 tatttccgcg ccctcggcca ccgtttcgac ggcgaggccg acctgcacgc gccgggacgc
     3661 gcgcgccagc tgcggatggc gttcgatgcc gtctgggagc gcgcccgccc ggtcggcgaa
     3721 taccgggcac tgggcctctg aaccgcgctg gtgcagtgcg gcaagcgctg cggctataat
     3781 ttgcgccctt tc
//
LOCUS       DATIQC010000486         2424 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_348785, whole genome shotgun sequence.
ACCESSION   DATIQC010000486 DATIQC010000000
VERSION     DATIQC010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348785"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VLM17_10440"
     CDS             <1..225
                     /locus_tag="VLM17_10440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010381128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate oxidase C-terminal
                     domain-containing protein"
                     /protein_id="HSR66001.1"
                     /translation="QSRTLESRETFEARLERYTHEFEGRQVPRPPRWTGFRVAPRAIE
                     FWYGADFRLHERDAYERDRAGTWTKRMLYP"
     gene            309..1097
                     /locus_tag="VLM17_10445"
     CDS             309..1097
                     /locus_tag="VLM17_10445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017464044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HSR66002.1"
                     /translation="MVCLTEEPTEVLYALGEQHRIVGISGFTVRPPQARREKPKVSAF
                     TSAKIDEILRLEPDFVVGFSDIQADIAAALIRHGVEVWISNHRSVAGILDYIRRLGAL
                     VGVAARADAYAAGLEAGLQALAREAATLPRRPKVYFEEWDEPPITGIRWVAELVRIAG
                     GDDVFPERAAEPLARQRILEDPGEVVRRAPDIILGSWCGKKFRPDKVAARPGWDAIPA
                     VRTGALHEVKSPLILQPGPAALTDGVREIAGFIRSWAATAGKAG"
     gene            1258..1566
                     /locus_tag="VLM17_10450"
     CDS             1258..1566
                     /locus_tag="VLM17_10450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66003.1"
                     /translation="MRIQPILAVSALLACGMASAQSNLPTVEVRASTLESVSVSCAKP
                     DSVSSADVERVLSIDDPSMTPGLRRRFVSAVAAACKAGIPHILMTAGPNGTLTWKRME
                     "
     gene            complement(1609..2103)
                     /locus_tag="VLM17_10455"
     CDS             complement(1609..2103)
                     /locus_tag="VLM17_10455"
                     /inference="COORDINATES: protein motif:HMM:NF025822.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4426 domain-containing protein"
                     /protein_id="HSR66004.1"
                     /translation="MRDVRLLLLACLTLPLAACGEGGNAPPAATGSSQARSTEQSAEA
                     EATVDGATVHVTTVQTSQLPDSVARGYGIARSPRTILLLVNLRGIGTAPPPAVSATVT
                     DLQQHVTPVALRELHVAGAEAATADYVGTVDATLPDTLRFTVLARRGGATATVEVSRD
                     FYPQ"
     gene            complement(2113..>2424)
                     /locus_tag="VLM17_10460"
     CDS             complement(2113..>2424)
                     /locus_tag="VLM17_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011348110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase dimerization
                     domain-containing protein"
                     /protein_id="HSR66005.1"
                     /translation="TALSGSGPAYVFLLAEAMQAAGEAEGLPADAARTLALQTILGAA
                     RMLTEEAAPAAELRRRVTSPGGTTQAAVEALEAGGFRALVAQAIHAATERGRQLSAAN
                     D"
BASE COUNT          338 a          861 c          899 g          326 t
ORIGIN      
        1 cagtcgcgca cgctggagtc gcgcgagacc ttcgaggcgc ggctggagcg ctacacgcac
       61 gagttcgagg gccgccaggt gccgcgtccg ccgcgctgga ccggcttccg cgtggcgccg
      121 cgcgcgatcg agttctggta cggcgccgac ttccgcctgc acgaacgcga tgcctacgag
      181 cgcgaccgcg ccggcacgtg gacgaagcgg atgctctatc cgtgaatgga acgacggaaa
      241 ccgcgccaac ggccgatgag gcgcacggct ccgcgccacc gggtaccggc ttccatggac
      301 cccaacgcat cgtctgcctc accgaggaac cgaccgaagt cctgtacgcg ctcggcgagc
      361 agcaccgcat cgtgggcatc agcggcttca ccgtgcgccc gccgcaggcg cgccgggaaa
      421 aacccaaggt cagcgccttc accagcgcga agatcgacga gatcctgcgg ctggagcccg
      481 acttcgtcgt cggcttctcc gacatccagg ccgacatcgc cgcggcgctg atccgccacg
      541 gcgtcgaagt gtggatcagc aaccaccgca gcgtcgccgg catcctcgac tacatccgcc
      601 ggctgggcgc gctggtcggc gtcgcggccc gggccgatgc gtacgcggcc ggactcgagg
      661 cgggactgca ggcgctcgcg cgcgaggcgg cgacgctgcc gcgccggccg aaggtctatt
      721 tcgaggagtg ggacgagccg ccgatcaccg gcatccgctg ggtcgccgaa ctggtgcgca
      781 tcgccggcgg cgacgacgtc tttcccgaac gcgccgccga gccgctggcc aggcagcgca
      841 tcctcgagga tcccggtgag gtcgtccggc gcgcgccgga catcatcctc ggctcgtggt
      901 gcgggaagaa gttccgtccg gacaaggtcg ccgcgcgtcc cggctgggat gccatcccgg
      961 cggtgcgcac cggcgcgctg cacgaagtga agtcgccgct gatcctgcag ccggggccgg
     1021 cggcgctgac cgatggcgtg cgcgagatcg ccggattcat ccggtcatgg gcggcgacgg
     1081 ccggcaaggc ggggtgaaag cggcggccgt tgtcgcctgc gggcggcgca tgcggaggcc
     1141 tgttgcacgc gaccaggccg ttgtcatcga caggcaggga cgccgtaccc aggggtggac
     1201 acaaggagtc cggcaccggc ggcaatcgcg ccgcccgccg cgaacaggag gtctgccatg
     1261 cgtatacaac cgatcctcgc cgtctccgcg ctgctggcat gcggcatggc gtctgcccag
     1321 agcaaccttc ccaccgtcga ggttcgcgcc agcacgctcg agtcggtgtc ggtgtcctgc
     1381 gccaagcccg attcggtcag ttcggcggac gtggagcggg tgctgtcgat cgacgacccc
     1441 agcatgaccc cgggcctgcg caggcgcttc gtttccgcgg tggccgccgc gtgcaaggcg
     1501 gggattccgc acatcctgat gaccgccggg ccgaacggca cgctgacctg gaagcggatg
     1561 gaatgaccgc ggaacgcgtc gccgcccggc gctccggcgc cgggtcgctc actgcgggta
     1621 gaagtcccgg ctgacctcga ccgtcgccgt cgccccgccg cgcctggcga gcacggtgaa
     1681 gcgcagggtg tcgggcagcg tggcgtcgac cgtgccgacg tagtcggcgg tcgccgcttc
     1741 cgcgcctgcg acatgcagct cgcgaagcgc caccggcgtg acgtgctgct gcagatcggt
     1801 gacggtggcg gagaccgccg gcggcggcgc ggtgccgatc ccgcgcaggt tcaccagcag
     1861 caggatcgtc cgcggcgagc gcgcgatgcc gtagccgcgg gcgacggagt cgggcagctg
     1921 cgaggtctgc acggtggtga cgtgcacggt ggcgccatcg accgtcgctt ccgcttcggc
     1981 ggactgttcc gtggaccgcg cctgcgacga gccggtcgcg gccggtggcg cgttgccgcc
     2041 ctccccgcag gcggccagcg gcagcgtgag gcaggcgagc agcagcaggc ggacatcgcg
     2101 catggcggac tcctagtcgt tggcggccga cagttgccgg ccgcgttctg tggcggcatg
     2161 gatggcttgc gcgaccagtg cgcggaaacc gcccgcctcc agggcctcga ccgccgcctg
     2221 ggtggtgccg ccgggcgagg tcacccggcg ccggagctcc gccgccggtg ccgcctcctc
     2281 ggtgagcatg cgcgccgcgc cgaggatggt ctgcagggcg agcgtgcgcg cggcgtcggc
     2341 cggcagtcct tccgcctcgc ccgcggcctg catggcctcg gcgagcagga acacataggc
     2401 cggaccgctg ccggacaggg cggt
//
LOCUS       DATIQC010000487         3230 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_631662, whole genome shotgun sequence.
ACCESSION   DATIQC010000487 DATIQC010000000
VERSION     DATIQC010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631662"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1205
                     /locus_tag="VLM17_10465"
     CDS             <1..1205
                     /locus_tag="VLM17_10465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66006.1"
                     /translation="TPAESDLEALAATPEEQAAAPSAPAAPVDTTATLAAPAEGGGSG
                     SANAFNPAISIILNGSYSHHSLDPADYVRAGFPLVAGAGPGANGFSLGESEMSLAANI
                     DDKFYGQLTLTAESEDGQDHIGVEEAFIDTTSLPAGFSLRMGRFYSNIGYLNSHHAHT
                     DSFFDRPLAYQAFLGNQYGDDGVQLRWVAPTSLFVELGGELFRGDTYPSGGAQDGGVG
                     TRTLFAHVGGSAGQDSEWLTGVSMLKTRTAGGEDGFSGDATLYLADGTWKWAPNGNFK
                     DGGLTLRGEYFVDNRDGVFVDPADPLVTTLWNGQRRGAYLESVWRLNRTWDVGYRYDK
                     LWADDEGPFASPFDPYRHTVEATWRNSEFSLVRLQLSHDKPNADDSDNAVTVQYQTSL
                     GAHGAHKF"
     gene            1215..2117
                     /locus_tag="VLM17_10470"
     CDS             1215..2117
                     /locus_tag="VLM17_10470"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HSR66007.1"
                     /translation="MKSILAVSVLLLGAFATHPAQAKLRVFACEPEWGSLVHELAGDK
                     VDVDVGTSALQDVHVIEAKPSLIAKVRAADLAVCTGAQLEVGWLPQLISQSGNTKVAS
                     GPGSFMAAAQVKTLEKPTALDRAYGDVHPDGNPHVQLDPRRVLIIARRLDDRLAELDP
                     ANAATYRQRGADFEKRWLAAMSKWAVEAAPLRGRKVVVHHISWVYLWDWLGMQQIGAL
                     EPKPGVPPTSGHLASLIGTTKSSNTLAIVRAAYQDPKPADWLAERTGVPAVTLPYTVG
                     GDAQSKDLFGLFDSTLSKLLGAAK"
     gene            2114..2929
                     /locus_tag="VLM17_10475"
     CDS             2114..2929
                     /locus_tag="VLM17_10475"
                     /inference="COORDINATES: protein motif:HMM:NF013143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HSR66008.1"
                     /translation="MTLNWEGLDLAILGPACAAGLVVLSTHVPLGKQVLSRGIIFIDL
                     AIAQIAGLGVILAQYLGIGEDGLGVQFAAAAAALLGAGLLSWTDRRWPQYQEPLIGTL
                     FVLAATGGLLLLANNPQGGEHLKDLLVGQILWVSYKQLIPALVLSVVILGVLAWRRGK
                     LAGLWFYGLFALAITASVQLVGVYLVFASLIVPALATAGMRGRARLVAAYLIGAAGYV
                     AGLVLSALLDLPSGAMIVWTLAGCALLAQALPLVRRAHPARPATLTDALPDAS"
     gene            3024..>3230
                     /locus_tag="VLM17_10480"
     CDS             3024..>3230
                     /locus_tag="VLM17_10480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerC domain-containing protein"
                     /protein_id="HSR66009.1"
                     /translation="MLDRVGATGSLLCAAHCALLPMVLALLPSLGVAAWLGDDFERGF
                     VLFASALGLFTLLWGYRRHRAVRAL"
BASE COUNT          455 a         1176 c         1118 g          481 t
ORIGIN      
        1 cgacccccgc cgaatccgat ctcgaggccc tcgcggcaac gccggaggag caggctgcgg
       61 cgccgtcggc gcccgccgcg ccggtcgaca ccacggccac gctggcagcg cccgcggagg
      121 gtggcggcag cggcagcgcg aacgccttca acccggcgat cagcatcatc ctcaacggca
      181 gctactcgca ccactcgctg gatccggccg actacgtgcg cgccggcttc ccgctggtgg
      241 ccggcgccgg cccgggcgcg aatggcttct cgctcggcga gagcgagatg tcgctggccg
      301 ccaacatcga cgacaagttc tacggccagc tgacgctgac cgccgagagc gaggacggac
      361 aggaccacat cggcgtcgag gaagccttca tcgacaccac ctccctgccc gcgggcttca
      421 gcctgcgcat gggccgcttc tattcgaaca tcggctacct caacagccac cacgcgcaca
      481 ccgacagctt cttcgaccgc ccgctcgcct accaggcctt cctcggcaac cagtacggcg
      541 acgacggcgt gcagctgcgc tgggtggcgc cgacgtcgct gttcgtcgaa ctcggcggcg
      601 aactgttccg gggcgacacc tacccgagcg gcggcgcgca ggacggcggc gtcggcacgc
      661 gcacgctgtt cgcgcatgtc ggcgggtcgg caggccagga cagcgagtgg ctcaccggcg
      721 tatcgatgct gaagacgcgc accgccggag gcgaggacgg cttcagcggc gatgccacgc
      781 tctatctcgc cgacggcacg tggaagtggg cgccgaacgg caatttcaag gacggcggcc
      841 tcacgctgcg cggcgagtac ttcgtggaca atcgcgacgg cgtgttcgtc gatcccgccg
      901 atccgctggt gacgacgttg tggaacgggc agcggcgcgg cgcctatctc gaaagcgtct
      961 ggcgcctgaa ccgcacgtgg gatgtcggtt accgctacga caagctgtgg gcggatgacg
     1021 aaggcccgtt cgccagtccg ttcgatccgt accggcacac ggtggaggcg acgtggcgca
     1081 acagcgaatt cagcctcgtg cgcctgcagc tcagccacga caagcccaac gcggacgaca
     1141 gcgacaacgc cgtcaccgtg cagtaccaga ccagcctcgg cgcgcacggc gcgcacaagt
     1201 tctaggagtc gaccatgaaa tccatcctcg cggtgtccgt cctgctgctc ggcgcgttcg
     1261 ccacccatcc cgcgcaggcc aagctgcgcg tgttcgcctg cgagccggag tgggggtcgc
     1321 tggtgcacga actggccggc gacaaggtcg acgtcgacgt cggcacctcc gcgctgcagg
     1381 acgtgcacgt catcgaggcc aagcccagcc tgatcgccaa ggtgcgcgcg gccgacctcg
     1441 ccgtgtgcac cggcgcgcag ctcgaggtgg gctggctgcc gcagctgatc agccagtcgg
     1501 gcaacaccaa agtcgcctcc ggccccggct cgttcatggc cgccgcgcag gtgaagacgc
     1561 tggagaagcc gaccgcgctt gaccgcgcct acggcgacgt gcatccggat ggcaatccgc
     1621 acgtgcagct cgacccccgc cgggtgctga tcatcgcgcg ccgcctcgac gaccgccttg
     1681 ccgagctcga cccggccaat gccgcgacct accggcagcg cggcgccgac ttcgagaagc
     1741 gctggctggc cgcgatgtcc aagtgggcgg tcgaggccgc gccgctgcgc gggcgcaagg
     1801 tcgtcgtcca ccacatcagc tgggtctacc tgtgggactg gctcggcatg cagcagatcg
     1861 gcgcgctgga acccaagccg ggcgtgccgc cgacctcggg ccacctcgcc agcctgatcg
     1921 gcacgaccaa gtcgagcaac acgctcgcca tcgtgcgcgc cgcctaccag gacccgaagc
     1981 ccgccgactg gctggccgaa cgcaccggcg tgccggcggt gaccctgccg tacacggtcg
     2041 gcggcgatgc gcagtcgaag gacctgttcg gcctgttcga ctccaccctg tccaagctgc
     2101 tgggagccgc caagtgacgc tcaactggga aggcctggac ctcgccatcc tcggccccgc
     2161 ctgcgcggcg gggctggtgg tgctgtccac ccacgtgccg ctcggcaagc aggtgctctc
     2221 gcgcgggatc atcttcatcg acctcgcgat cgcgcagatc gccggcctcg gcgtgatcct
     2281 cgcccagtac ctcggcatcg gcgaggacgg gctcggcgtg cagttcgcgg ccgcggccgc
     2341 cgcgctgctc ggcgcgggcc tgctgtcctg gaccgaccgg cgctggccgc agtaccagga
     2401 gccgctgatc ggcaccctgt tcgtgctggc ggcgacgggc ggcctgctgc tgctcgccaa
     2461 caacccgcag ggcggcgaac acctgaagga cctgctggtc ggtcagatcc tgtgggtcag
     2521 ctacaagcag ctgattcccg cgctggtgct gtcggtggtg atcctgggcg tgctggcgtg
     2581 gcggcgcggg aagctggcgg gcctgtggtt ctacggcctg ttcgcgctgg cgatcaccgc
     2641 ctcggtgcag ctggtcggcg tgtacctggt gttcgccagc ctgatcgtgc cggcgctcgc
     2701 cacggcgggc atgcgcggcc gcgcgcgcct ggtcgccgcc tacctgatcg gcgcggccgg
     2761 ctatgtcgcc ggcctggtgc tgtcggcgct gctggacctg ccgagcggcg ccatgatcgt
     2821 gtggacgctg gcaggctgtg cgctgctcgc ccaggcattg ccgctggtgc gccgcgcgca
     2881 cccggcacgg ccggcgacgc tcacggatgc gttgcccgac gcgtcctgaa gcgttcacgg
     2941 tgggcccgcc cggcattgtt acaatgtaac gaatgacgga ccgccgcctc ccgcccgccg
     3001 ctcctgcccg ccgcccggcg ccgatgctcg atcgcgtcgg cgccaccggg tcgctgctgt
     3061 gcgcggcgca ctgcgcgctg ctgccgatgg tgctggcgct gctgccttcg ctcggcgtcg
     3121 cggcgtggct gggcgacgac ttcgagcgcg gcttcgtgct gttcgccagc gcactcggcc
     3181 tgttcaccct gctgtggggc taccggcggc accgcgcggt ccgcgcgctg
//
LOCUS       DATIQC010000488         2771 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_596709, whole genome shotgun sequence.
ACCESSION   DATIQC010000488 DATIQC010000000
VERSION     DATIQC010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596709"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..357
                     /gene="clpS"
                     /locus_tag="VLM17_10485"
     CDS             37..357
                     /gene="clpS"
                     /locus_tag="VLM17_10485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005914463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HSR66010.1"
                     /translation="MTKRTDQEHSHGVAVETSKPELARPPLYSVLLLNDDYTPMDFVV
                     EVLVRFFAMNIEKATQVMLHVHTRGRGVCGVYTREVAESKVAQVNEYSRLNQHPLLCT
                     MEKA"
     gene            438..2711
                     /gene="clpA"
                     /locus_tag="VLM17_10490"
     CDS             438..2711
                     /gene="clpA"
                     /locus_tag="VLM17_10490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0043335 - protein unfolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HSR66011.1"
                     /translation="MFSKDLEYSIGQCYKRAREARHEYMTVEHLLLALLDNPSAETVL
                     RATGADFGRLRSDLEDAIERSVAKLDSDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEV
                     TGANVLVAIFGEKDSHAVYFLNQQDVTRLDVVNYLSHGIAKQGGEEPHGHDESARAEG
                     GEGEGRGDALGEYASNLNELALAGKIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAG
                     VGKTALAEGLAKRIVEGDVPEVLADAVIYALDLGALVAGTKYRGDFEKRLKAVLAALK
                     KTPGAILFIDEIHTIIGAGSASGGTMDASNLIKPVLASGELRCIGSTTFQEYRGIFEK
                     DRALARRFQKIDVVEPTVGEAIEILHGLKPKYESHHGVTYADDALQAAVDLSVKHIAD
                     RLLPDKAIDVIDEAGARQRLLPLDSRKSTIDVEEIETIVAKMARIPAKQVSASDKDVL
                     QHLERNLKMVIFGQDPAIGTLTSAIKLARSGLANPDKPIGNFLFAGPTGVGKTEVTRQ
                     LALQLGIELVRFDMSEYMEPHSVSRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDE
                     VEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVILVMTTNAGAAQAARRSIGFTRQD
                     HSSDAMEVIRRSFSPEFRNRLDAVVQFQPLGMEHILRVVDKFLIELETQLHEKNVSLS
                     ATPTARDWLAQHGFDPLMGARPMARVIQDRIKRPLADELLFGKLVNGGRVSIDVKDNE
                     LVVDAQAEPEKLLPATV"
BASE COUNT          514 a          942 c          920 g          395 t
ORIGIN      
        1 gagcgtccat ctgcgtgggt ttcatataat ccgggcatga ccaaacgtac cgaccaggag
       61 cacagccacg gcgtcgcggt cgaaaccagc aagcccgaac tggcgcgccc cccgctgtat
      121 tcggtgttgc tgctgaacga cgactacacc ccgatggact tcgtggtcga ggtcctcgtg
      181 cgcttcttcg ccatgaacat cgagaaggcc acccaggtga tgttgcacgt gcacacccgg
      241 ggccggggtg tgtgcggcgt ctacacgcgc gaggtggcag agtccaaggt ggcgcaggtg
      301 aacgaatact caaggctcaa ccagcacccg ttgctgtgca ccatggagaa ggcataaaca
      361 ggtcttgtgg cagccgcttg tggaacccgg gaatcgcccc acatccaccg gcagtacttc
      421 cggagggcaa ccgccccatg ttcagcaaag acctcgaata cagcatcggc cagtgctaca
      481 agcgcgcccg cgaggcgcgc catgagtaca tgacggtcga gcacctcctg ctcgcgctgc
      541 tcgacaaccc ctcggccgag accgtgctgc gcgccaccgg cgccgacttc ggccgcctgc
      601 gcagcgacct ggaggacgcc atcgagcggt cggtcgccaa gctcgacagc gacgacggcc
      661 gcgataccca gccgaccctc gggttccagc gcgtgctcca gcgcgccgtc taccacgtcc
      721 agtcctcggg caagaaggag gtcaccggcg ccaacgtgct tgtggcgatc ttcggcgaaa
      781 aggactcgca tgcggtctat ttcctcaacc agcaggacgt cacccggctg gatgtcgtca
      841 actacctctc gcacggcatc gccaagcagg gcggcgagga gccgcacggc cacgacgaat
      901 cggcccgcgc cgaaggcggc gagggcgagg gccgcggcga cgcgctcggc gaatacgcca
      961 gcaacctcaa cgaactcgcg ctcgccggca agatcgatcc gctggtcggc cgcgcggacg
     1021 agatcgagcg caccatccag gtgctgtgcc gccgccgcaa gaacaacccg ctgtacgtcg
     1081 gcgaggccgg cgtgggcaag accgcgctcg cggagggcct ggccaagcgc atcgtcgagg
     1141 gcgacgtccc cgaggtgctc gccgacgcgg tgatctacgc gctcgacctc ggcgcgctgg
     1201 tcgccggcac caagtaccgc ggcgacttcg agaagcgcct gaaggcggtg ctcgcggcgc
     1261 tgaagaagac tcccggcgcg atcctgttca tcgacgagat ccacacgatc atcggcgccg
     1321 gctcggcctc gggcggcacc atggacgcgt ccaacctgat caagccggtg ctcgcctcgg
     1381 gcgaactgcg ctgcatcggt tcgaccactt tccaggagta ccgcggcatc ttcgagaagg
     1441 accgtgcgct ggcgcggcgc ttccagaaga tcgacgtggt cgagccgacc gtgggcgagg
     1501 cgatcgagat cctgcacggc ctgaagccga agtacgagtc gcaccacggc gtgacctacg
     1561 ccgacgacgc gctgcaggcg gcggtcgacc tgtcggtcaa gcacatcgcc gaccgcctgc
     1621 tgccggacaa ggccatcgac gtcatcgacg aggcgggcgc gcgccagcgc ctgctgccgc
     1681 tggactcgcg caagagcacc atcgacgtcg aggagatcga aaccatcgtc gccaagatgg
     1741 cgcgcatccc ggccaagcag gtgagcgcct cggacaagga cgtgctgcag cacctcgagc
     1801 gcaacctgaa gatggtgatc ttcggccagg accccgcgat cggcaccctg accagcgcga
     1861 tcaagctggc gcgctcgggc ctggccaacc cggacaagcc gatcggcaac ttcctgttcg
     1921 ccggcccgac cggcgtgggc aagaccgagg tcacccgcca gctggcgctg cagctcggca
     1981 tcgagctggt gcgcttcgac atgtccgagt acatggagcc gcactcggtt tcgcgcctga
     2041 tcggcgcgcc cccgggctac gtcggcttcg accagggcgg gctgctgacc gagaagatcg
     2101 tcaagacgcc gcactgcgtg ctgctgctgg acgaggtcga gaaggcgcac ccggacatct
     2161 tcaacatcct gctgcaggtg atggaccgcg gcgtgctcac cgacaccaac gggcgcgagg
     2221 cgaacttcaa gaacgtgatc ctggtgatga cgacgaacgc gggcgcggcg caggcggcgc
     2281 ggcgttcgat cggcttcacc cgccaggacc attccagcga cgcgatggaa gtgatccgtc
     2341 gcagcttcag cccggaattc cgcaaccgcc tcgatgccgt cgtgcagttc cagccgctgg
     2401 ggatggagca catcctgcgg gtcgtcgaca agttcctgat cgagctggaa acccagctgc
     2461 acgagaagaa cgtgtcgctg tcggccacgc cgaccgcgcg cgactggctg gcgcagcacg
     2521 gcttcgaccc gctgatgggc gcgcggccga tggcgcgggt gatccaggac cggatcaagc
     2581 ggccgctcgc cgacgagctg ttgttcggca agctggtgaa cggcggccgc gtcagcatcg
     2641 acgtcaagga caacgagctg gtggtcgatg cgcaggccga gccggaaaag ctgctgccgg
     2701 ccacggtctg agcctccggc cggaatgaaa aaggcggcca tgggccgcct ttttcatgcc
     2761 gccgcgcggg g
//
LOCUS       DATIQC010000489         2982 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_243079, whole genome shotgun sequence.
ACCESSION   DATIQC010000489 DATIQC010000000
VERSION     DATIQC010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243079"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..372)
                     /locus_tag="VLM17_10495"
     CDS             complement(<1..372)
                     /locus_tag="VLM17_10495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66012.1"
                     /translation="MSNGNGVAATFTNAVETVAGKAHEVGSAVVGRAGSVAGATREVA
                     GQAAEVAGGVIGAGAAVVGEVVRKGVAAVRKRARKAARKASARKAAKQAAPRKAVARK
                     AAAKKGATKQAAAKKAAPRKAV"
     gene            complement(463..2613)
                     /locus_tag="VLM17_10500"
     CDS             complement(463..2613)
                     /locus_tag="VLM17_10500"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009574097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HSR66013.1"
                     /translation="MSTVRLEAVKTTQEQEIPMQPASQDIWDKKYRLKTKSGQAVDAD
                     IDGTYQRVAKALSEAEPTAEKRRYWNERFLWALRRGAIPAGRITSNAGALEHKPATST
                     INCTVSGTIEDSMDGILDKVHEAGLTLKAGCGIGYEFSTLRPRGAFVAGAGAYTSGPM
                     SFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVKDFIRAKREDGRLRQFNLSLLITD
                     GFMQAVEHDGDWPLVFPINSKEAGDIDIENGTDVVWREWPTHRNYITRDDGLVACKVY
                     GHIRARHLWDMIMVSTYDYAEPGFILIDKVNEMNNNWWCESIRATNPCGEQPLPPYGA
                     CLLGSVNLTKFVRKPFTDEASFDWEEYKEVVRVFTRMLDNVVEVNGLPLEQQRNEIMR
                     KRRHGMGFLGLGSTVTMLKMKYGSKESCEFTERIARDMAVAGWETGLALAKEKGPAPI
                     MEERFTVTAEMLRKRPEMAKDGWKAGQEIEGKVLHAKYSRYMQRVHEVAPELVDELAE
                     VGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNVIREGKKTKEKVDVWSYE
                     LLAYRELVNPAAMPYAEDAAAKLPDYFIAADDITPKEHVDVQAAAQKWVDSSISKTAN
                     VPTDYPYEDFKDIYRYAYQQGLKGCTTFRFNPAAFQGVLVKEADLENTTYRFELEDGS
                     VLEVKGNEQIEYDGEVHTAANLFDALKEGYYGKF"
BASE COUNT          362 a         1014 c         1027 g          579 t
ORIGIN      
        1 gacggccttg cgtggcgcgg ccttcttcgc ggcggcctgc ttcgttgcgc ccttcttcgc
       61 ggcggccttc ctcgcgacgg ctttccgcgg cgccgcctgc ttcgcggcct tgcgggcgct
      121 ggccttgcgc gcggccttgc gggcgcgctt gcgcaccgcg gcgacgccct tgcgcaccac
      181 ctcgcccacc accgccgcgc cggcgccgat cacgccgccg gcgacctcgg ccgcctggcc
      241 cgccacttcc cgcgtggccc cggccacgct gccggcgcgc ccgaccaccg cgctgccgac
      301 ctcgtgggcc ttgccggcca ccgtttccac ggcgttggtg aaggtcgccg ccaccccgtt
      361 gccgttgctc atgggtcctc ctgggacgcc gtgtcgtgcc gcgtgtcctg gaactgccgc
      421 gatgccggcg gtggccggca tcggaacctg tcgcgcgcgc tcctagaact tgccgtaata
      481 gccctctttc agcgcatcga acaggttggc ggcggtgtgc acctcgccgt cgtattcgat
      541 ctgctcgttg cccttgacct cgagcacgct gccgtcctcg agctcgaagc ggtaggtggt
      601 gttctccagg tccgcttcct tcaccagcac gccctggaac gcggcggggt tgaagcggaa
      661 ggtggtgcag cccttcaggc cctgctggta ggcgtagcgg tagatgtcct tgaagtcctc
      721 gtacgggtag tcggtcggga cgttcgcggt cttggagatg gagctgtcca cccacttctg
      781 cgccgcggcc tgcacgtcga cgtgctcctt cggcgtgatg tcgtcggcgg cgatgaagta
      841 gtcgggcagc ttcgccgcgg cgtcctccgc gtagggcatc gcggccgggt tgaccagctc
      901 gcggtaggcg agcagctcgt acgaccacac gtcgaccttt tccttggtct tcttgccttc
      961 gcggatcacg ttgcggctgt agtggtgggc gaacgacggc tcgatgccgt tggaggcgtt
     1021 gttggccagc gacagcgaga tcgtgccggt cggcgcgatc gagctgtggt gggtgaagcg
     1081 cgcgccgacc tcggcgagct cgtcgaccag ttccggcgcg acctcgtgca cgcgctgcat
     1141 gtagcgcgag tacttcgcgt gcagcacctt gccctcgatc tcctggccgg ccttccagcc
     1201 gtccttcgcc atctccgggc gcttgcgcag catctcggcg gtgacggtga agcgctcctc
     1261 catgatcggc gccgggccct tctccttcgc cagcgcgagg ccggtttccc agccggcgac
     1321 cgccatgtcg cgggcgatgc gctcggtgaa ctcgcacgac tccttcgagc cgtacttcat
     1381 cttcagcatg gtcacggtgc tgcccaggcc gaggaagccc atgccgtggc ggcgcttgcg
     1441 catgatctcg ttgcgctgct gctccagcgg caggccgttc acctcgacca cgttgtcgag
     1501 catgcgggtg aacacgcgca cgacttcctt gtattcctcc cagtcgaacg aggcctcgtc
     1561 ggtgaagggc ttgcgcacga acttggtgag gttgaccgag ccgagcaggc acgcgccgta
     1621 cggcggcagc ggctgctcgc cgcacgggtt ggtggcgcgg atcgactcgc accaccagtt
     1681 gttgttcatc tcgttgacct tgtcgatgag gatgaacccg ggctcggcgt agtcgtacgt
     1741 cgagaccatg atcatgtccc acaggtggcg ggcgcggatg tgcccgtaca ccttgcacgc
     1801 gaccaggccg tcgtcgcggg tgatgtagtt gcggtgggtc ggccactcgc gccagacgac
     1861 gtcggtgccg ttctcgatgt cgatgtcgcc ggcttccttg ctgttgatcg ggaacaccag
     1921 cggccagtcg ccgtcgtgct cgaccgcctg catgaagccg tcggtgatca gcagcgagag
     1981 gttgaactgg cgcaggcggc cgtcctcgcg cttggcgcgg atgaaatcct tcacgtccgg
     2041 gtgcgacacg tcgaaggtgc ccatctgcgc gccgcggcgg ccgcccgcgc tcgacacggt
     2101 gaagcacatc ttgtcgtaga tatccatgaa ggacatcggg ccggaggtgt acgcgccggc
     2161 gccggcgacg aacgcgccgc gcgggcgcag cgtggagaac tcgtagccga tgccgcagcc
     2221 ggccttgagg gtcaggcccg cctcgtggac cttgtcgagg atgccgtcca tcgagtcctc
     2281 gatggtgccg gacacggtgc agttgatggt cgaggtcgcc ggcttgtgct cgagcgcgcc
     2341 ggcattggag gtgatgcggc cggccgggat ggcgccgcgg cgcagcgccc acaggaagcg
     2401 ctcgttccag tagcggcgct tctcggcggt cggctcggcc tcggacaggg ccttggccac
     2461 gcgctggtag gtgccgtcga tgtcggcgtc gacggcctgc cccgacttgg tcttcagccg
     2521 gtacttcttg tcccagatgt cctgggacgc cggctgcatc gggatctcct gctcctgcgt
     2581 ggtcttgacc gcttcgaggc gcaccgtgct catccttctg tttctccccg tcggccggat
     2641 catccccggc ctgttgttct ggtggcgtgc tgtttccaag tgcccggagg ccggcgacgc
     2701 gttgccgcgg ccgcgccttc gcgcaccgtg aatgtcggtg tcaggtctgc cgtcgcgccg
     2761 cttgcgtcat cgccttcccc ctggctttac gctgcgtggg aggctgtgga taagccccca
     2821 atgcttgggc cctgcttctc gccgacccca acatcttggg gtgggcgagt ggggaaagta
     2881 gaccgggggc gaacgggtgt caaccggtcc ggacggcttt ccgggatccg gccgcggcga
     2941 cgtgggacgg gcgcgaaaac ggccatgccg gtgccgcgcg cg
//
LOCUS       DATIQC010000490         3099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_243086, whole genome shotgun sequence.
ACCESSION   DATIQC010000490 DATIQC010000000
VERSION     DATIQC010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3099
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243086"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..981
                     /locus_tag="VLM17_10505"
     CDS             31..981
                     /locus_tag="VLM17_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HSR66014.1"
                     /translation="MNVRVLAPGLLTTVQDRGRLGWRHLGVGAAGALDPHAHALANLL
                     AGNDAGAATLEISLAGPTLRFERAARIALCGADIEARCDGIALPGARPCLLPAGSTLA
                     LGPCRRGARAYLAVEGGFDVGPVLGSRSTDLRGGFGGLDGRALRKGDALPLGPARDVA
                     VDAPRFPSWWIDAMPGRGPAGMIRVLPGADATAPGDALFRRDWDVAAASDRQGLRLEG
                     EAIAVADRRERVSAPVAPGTIQLPPDGRPIVLLADAQTHGGYPRIGHVVRADWPRLAQ
                     LRPGERLRFAPCTPEQAHAAWQRRRQELARLALMIAAAPL"
     gene            1062..2858
                     /locus_tag="VLM17_10510"
     CDS             1062..2858
                     /locus_tag="VLM17_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HSR66015.1"
                     /translation="MRPLLRQVPLAVLLAATIVGCSTRGTTTPAPTSAAVAPATADAN
                     AGFDAAIDGFIAGYFEHNPVFAANAGKHEYDGRLPDYSPAGLKATADWLHAQRDRLAA
                     FGDGASGNGGLDAQHRFRRDYAQAVIDGQLFWLEDSGFPYGNPAFYTGDLSPSMYLTR
                     PYAPLPQRMDAFIRYEQALPAAIAQMKANLRTPLPASWVDLGYNTFAGYASFFKGDVP
                     KIFAEVHDDALQARLKDSNAAAVRATQAMADWFKAQKPAATQAFALGAGKFSKMLQAT
                     ERVDMPLDQLKAAGQADLARNLASLKAACARFAPGKPLAKCVDKVNADKPQGGAVEGA
                     RAQLAGLRQFIVDHDIVTIPGPEQAQVEEAPPYNRWNFAYIEIPGPYEKNLPSVYYIA
                     PPDPHWSKAEQAAYVPGRSVLLFTSAHEVWPGHFLQFLHSNRSDWKFGQLFVGYAFAE
                     GWAHYTEEMMFDAGLDGATPETHIGQLSEALLRDVRFLSAIGLHTGGMTIAQSEKMFR
                     EQGLQDAGNARQQAARGTYDPAYLNYTLGKLMIMQLREDWTRDKGGRAAWKQFHDAFL
                     AFGGPPIPLVRAQMLGGAPEAKLWTAPAAGAH"
     gene            2862..>3099
                     /locus_tag="VLM17_10515"
     CDS             2862..>3099
                     /locus_tag="VLM17_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HSR66016.1"
                     /translation="MPTLDFNCDLGEGCGTDAAIVPVISSASIACGAHAGDAATMRDT
                     VALCLAHGVAIGAHPSFEDRAHFGRRELAVAAAAL"
BASE COUNT          429 a         1181 c         1080 g          409 t
ORIGIN      
        1 ccgcgtgcgc ttcgtcgtcg agcgcgcgcc atgaacgtgc gcgtcctcgc gcccggcctc
       61 ctgaccaccg tgcaggaccg gggcaggctg ggttggcgcc acctgggcgt cggcgccgcc
      121 ggcgcgctcg acccgcatgc gcacgcgctc gccaacctgc tggccggcaa cgacgccggc
      181 gcggccacgc tcgagatcag cctggccggg ccgacgctgc gcttcgaacg cgcggcccgc
      241 atcgcgctgt gcggcgccga catcgaggcg cgttgcgacg gcatcgccct gcccggcgca
      301 cgcccctgcc tgctgccggc cggcagcacg ctcgcgctcg gcccgtgccg gcgcggcgcg
      361 cgcgcgtacc tggcggtgga gggcggcttc gacgtcgggc cggtcctcgg cagccgcagc
      421 accgacctgc gcggcggctt cggtggcctg gacggacgcg cattgcgaaa gggcgacgcg
      481 ctgccgctcg gcccggcgcg cgacgtggcg gtcgatgcgc cgcgcttccc gtcatggtgg
      541 atcgacgcga tgcccgggcg cggtccggcc ggcatgatcc gcgtgcttcc cggcgccgat
      601 gcgacagcgc cgggcgatgc gctgttccgc cgggactggg acgtcgcggc cgcgagcgac
      661 cgccagggcc tgcgtctcga aggcgaagcg atcgccgtcg ccgatcggcg cgaacgcgtg
      721 tccgcaccgg tcgcgcccgg caccatccag ctgccgcccg acgggcgtcc gatcgtgctg
      781 ctcgccgacg cgcagaccca cggcggctat ccgcgcatcg gccacgtggt ccgcgccgac
      841 tggccacgcc tggcgcaact gcggcccggc gagcgcctgc gcttcgcgcc gtgcacgccg
      901 gagcaggcac acgcggcctg gcagcggcga cgacaggagc tggcgcggct ggcactgatg
      961 atcgccgctg cgccgctgta gccgcggtcg ccgcgggcgt cgtgagttgc gccctggcca
     1021 cccggtgcta ggctcggcgt cccaccgcca gggagtgcgc catgcgtccg ttgctccgcc
     1081 aggttccgct cgccgtcctg ctcgccgcga ccatcgtcgg ctgctccacc cgcggcacca
     1141 cgaccccggc gccgacctcc gcggcggtcg cgcccgcgac ggccgatgcc aacgccggtt
     1201 tcgacgccgc gatcgacggc ttcatcgcgg gctatttcga gcacaacccg gtgttcgccg
     1261 ccaacgcggg caagcacgag tacgacggca ggctgcccga ctacagcccc gccggcctca
     1321 aggcgaccgc ggactggctg cacgcccagc gcgaccgcct cgccgccttc ggcgacggcg
     1381 cgtccggcaa cggcggtctc gacgcgcagc accgcttccg ccgcgactac gcgcaggcgg
     1441 tgatcgatgg ccagctgttc tggctggagg attccggctt cccctacggc aacccggcgt
     1501 tctacaccgg cgacctgtcg ccgagcatgt acctcacccg cccgtacgcg ccgctgccgc
     1561 agcgcatgga cgccttcatc cgctacgaac aggcgctgcc ggccgcgatc gcgcagatga
     1621 aggccaacct gcgcacgccg ttgccggcgt cgtgggtcga cctcggctac aacacgttcg
     1681 ccggctatgc cagcttcttc aagggcgacg tgccgaagat cttcgccgag gtgcacgacg
     1741 atgccctgca ggcgcgactg aaggacagca acgccgccgc ggtacgggcg acgcaggcga
     1801 tggccgactg gttcaaggcg cagaagccgg cggcgacgca ggccttcgcg ctcggcgccg
     1861 gcaagttctc gaaaatgctg caggccaccg agcgcgtcga catgccgctc gaccagctca
     1921 aggcggccgg ccaggccgac ctcgcgcgca accttgcctc gctcaaggcc gcctgcgcac
     1981 ggttcgcgcc aggcaagccg ctggcgaagt gcgtcgacaa ggtcaacgcc gacaaaccgc
     2041 agggcggcgc ggtcgagggc gcgcgcgcgc aactcgccgg cctcaggcag ttcatcgtcg
     2101 accacgacat cgtcaccatc ccgggcccgg aacaggcgca ggtcgaggag gcgccgccct
     2161 acaaccgctg gaacttcgcc tacatcgaga ttcccggccc ctacgagaag aacctgcctt
     2221 cggtctacta catcgcgccg cccgacccgc actggtcgaa ggccgaacag gccgcgtacg
     2281 tgccgggcag gtcggtgctg ctgttcacgt ccgcgcacga ggtgtggccg ggccacttcc
     2341 tgcagttcct gcactccaac cgctcggact ggaagttcgg ccagctcttc gtcggctacg
     2401 ccttcgccga aggctgggcc cactacaccg aggagatgat gttcgacgcc ggcctcgacg
     2461 gcgccacgcc ggagacgcac atcggccagc tcagcgaggc gctgctgcgc gacgtgcgct
     2521 tcctgtccgc catcggcctg cacaccggcg ggatgaccat cgcgcagtcg gagaagatgt
     2581 tccgcgagca gggcctgcag gacgccggca acgcccgcca gcaggcggcg cgcggcacct
     2641 atgaccccgc ctacctcaac tacaccctgg gcaagctgat gatcatgcag ctgcgcgagg
     2701 actggacccg cgacaagggc ggacgcgcgg cctggaaaca gttccacgat gcgttccttg
     2761 ccttcggcgg cccgccgatc ccgctggtgc gcgcgcagat gctcggcggc gcgccggagg
     2821 cgaagctgtg gacggcgccg gcggcgggag cgcactgagg cttgccgacg ctcgacttca
     2881 attgcgacct cggcgaaggc tgcggcaccg atgccgcgat cgtcccggtc atcagctcgg
     2941 ccagcatcgc ctgcggcgcg catgcgggcg acgcggcgac gatgcgggac accgtggcgc
     3001 tgtgcctggc gcacggcgtg gccatcggcg cgcatccgtc gttcgaggac cgcgcgcact
     3061 tcgggcggcg ggaactcgcc gtcgccgccg ctgcgctgg
//
LOCUS       DATIQC010000491         2160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_243194, whole genome shotgun sequence.
ACCESSION   DATIQC010000491 DATIQC010000000
VERSION     DATIQC010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_243194"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VLM17_10520"
     CDS             complement(<1..371)
                     /locus_tag="VLM17_10520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase RsgA"
                     /protein_id="HSR66017.1"
                     /translation="MTPLRAIGWPHAGPVTDPQWAACLAAHPQARPARVVEQHRTGYV
                     VAEGPDAGAAAESPPEWQRASGYRKGRLAPEERAAVGDWVLVEGSGRSAKIVALLPRH
                     TAIKRAAAGEHYKQQLIAANV"
     gene            500..1753
                     /locus_tag="VLM17_10525"
     CDS             500..1753
                     /locus_tag="VLM17_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HSR66018.1"
                     /translation="MSPPPKIPAVKTRERLSEVRYEIRGELARRARELEAQGRSPIKL
                     HIGNPGVFGFRAPEHLQRAIADRIDRTDPYVHQQGLPAAREAIAADHKRRGTPNASPE
                     RVFVGNGVSELIDLSLRALLNPGDEVLVPSPDYPLWTAATILNDGRPVHYRCRAEDGF
                     LPDPDEIAALVTPRTRAIVLINPNNPTGASYPRALLERIVAIAARHGLLLMADEIYDE
                     IVYDDAVFQPLAPLAGELPCLSFGGLSKVHRACGWRVGWAVLSGDPLASGELHHAMDL
                     LGALRLCANVPGQFAIEAALQGDATIRALTAPGGRLHETRRALVECCAASEHLQLVTP
                     QAALYGFPAVAGAAARGFDDHAFALELLETEDVLIVPGTSFNVPYRHHFRVTLLPEAP
                     VLREVFARIERVLARRADAATRAVA"
     gene            1757..>2160
                     /locus_tag="VLM17_10530"
     CDS             1757..>2160
                     /locus_tag="VLM17_10530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014162007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HSR66019.1"
                     /translation="MAGAADELRYLALGDSYTIGEGVPEDGRWPALLARALRRGGIPL
                     ADPRIIAATGWTTDELAAALDAVERGEMVEMAVDEHAPRPAPPYQLVTLLIGVNNQYR
                     GRAVAEYRAQLQALVARAVAYAGGEPRRVVMLS"
BASE COUNT          278 a          825 c          774 g          283 t
ORIGIN      
        1 tcgacgttgg ccgcgatcag ctgctgcttg taatgctcgc cggcggcggc gcgcttgatc
       61 gcggtgtgcc gcggcagcag cgcgacgatc ttcgccgacc tgccgctgcc ttcgaccagc
      121 acccagtcgc cgaccgccgc gcgttcctcc ggcgccagcc ggcccttgcg gtagccgctg
      181 gcgcgctgcc actcgggcgg ggattcggct gcggcgcccg cgtccggacc ctcggcgacg
      241 acgtagccgg tacggtgctg ctcgaccacc cgcgccggtc gcgcctgcgg atgcgcggcc
      301 aggcaggccg cccactgcgg gtcggtgacc gggccggcgt ggggccagcc gatcgcgcgc
      361 agcggagtca tggatgaggg tggcgtggca tcggcgggat tctaagcggc gcgcgcggat
      421 cgcgatgcgc gctcgcgcct gcacccgcgc gcggccgctt tccgctaggc tggcctgccc
      481 cgccgcgcca gccccgtcga tgtcgccgcc cccgaaaatt cctgccgtga agacgcgcga
      541 gcgcctgtcc gaagtccgtt acgagatccg cggcgaactg gcccggcgcg cgcgcgagct
      601 ggaggcgcag gggcgcagcc cgatcaagct gcacatcggc aaccccggcg tgttcggatt
      661 ccgtgcgccg gaacacctgc agcgcgcgat cgccgaccgc atcgaccgca ccgatcccta
      721 cgtccaccag cagggactgc cggccgcgcg cgaggcgatc gccgcggacc acaagcgccg
      781 cggcacgccg aacgcgagcc cggagcgcgt gttcgtcggc aacggcgtca gcgagctgat
      841 cgacctcagc ctgcgcgcgc tgctcaaccc cggcgacgag gtgctggtgc cctcgcccga
      901 ctatccgctg tggaccgcgg cgaccatcct caacgacggc cgcccggtgc actaccgctg
      961 ccgcgccgag gacggcttcc tgcccgatcc ggacgagatc gccgcgctgg tcacgccgcg
     1021 cacccgcgcg atcgtgctga tcaaccccaa caacccgacc ggcgccagct atccgcgcgc
     1081 gctgctcgag cgcatcgtcg cgatcgccgc gcgccacggc ctgctgctga tggccgacga
     1141 gatctacgac gagatcgtct acgacgacgc ggtgttccag ccgctggcgc cgctcgccgg
     1201 cgagctgccg tgcctgtcct tcggcggcct gtcgaaggtg caccgcgcct gcggctggcg
     1261 cgtcggctgg gcggtgctga gcggcgatcc gctcgccagc ggcgaactgc accacgcgat
     1321 ggacctgctc ggcgcgctgc gcctgtgcgc gaacgtgccg ggccagttcg cgatcgaggc
     1381 ggcgctgcag ggcgatgcga ccatccgggc gctgaccgcg cccggcggtc gcctgcacga
     1441 aacccgccgt gcgctggtcg agtgctgcgc agcgagcgaa cacctgcaac tggtgacgcc
     1501 acaggccgcg ctctacggct tccccgcggt ggcgggcgcg gccgcgcgcg gcttcgacga
     1561 ccatgccttc gcgctcgagc tgctggaaac cgaagacgtg ctgatcgtgc ctggcaccag
     1621 cttcaacgtg ccctaccgcc accacttccg cgtcaccctg ctgccggagg cgccggtgct
     1681 gcgcgaagtg ttcgcccgca tcgagcgcgt gctcgcgcgc cgcgcggacg cggccacgcg
     1741 cgcggtggcc tgagcgatgg cgggcgccgc ggacgagctg cgttacctgg cgctcggcga
     1801 cagctacacc atcggcgagg gcgtccccga ggacggccgc tggccggcgc tgctggcgcg
     1861 ggcgctgcgc aggggcggca tcccgctggc cgacccgcgc atcatcgccg ccaccggctg
     1921 gaccaccgac gaactcgccg cggcgctcga tgccgtcgaa cgcggcgaaa tggtggaaat
     1981 ggccgtcgac gagcacgcgc cgcgaccggc gccgccctac cagctggtca cgctgctgat
     2041 cggggtcaac aaccagtacc gcgggcgggc ggtcgccgag taccgggcgc agctgcaggc
     2101 gctggtcgcg cgcgcagtcg cctacgccgg cggcgagccg cggcgcgtcg tgatgctgtc
//
LOCUS       DATIQC010000492         3846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_137317, whole genome shotgun sequence.
ACCESSION   DATIQC010000492 DATIQC010000000
VERSION     DATIQC010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_137317"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VLM17_10535"
     CDS             <1..271
                     /locus_tag="VLM17_10535"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007969013.1"
                     /note="catalyzes the DNA-template-directed extension of
                     the 3'-end of a DNA strand; the delta' subunit seems to
                     interact with the gamma subunit to transfer the beta
                     subunit on the DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HSR66020.1"
                     /translation="ALAQRWTADAQAVLRLEFAADLALQDAARLTDPRRTRRLAAWFD
                     AANRTRALLRTTVRPDLAVAELLLAWRMDAGAQAGQGRGTNEVRR"
     gene            271..627
                     /locus_tag="VLM17_10540"
     CDS             271..627
                     /locus_tag="VLM17_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035438 - cyclic-di-GMP binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PilZ domain-containing protein"
                     /protein_id="HSR66021.1"
                     /translation="MANVGGARQGILSLAVKDKAQLYNAYMPYLKSGGIFVPTAKRYF
                     LGDEVFLLLTLPESNERLPVAGKVVWVTPPGAQGNRAAGIGVQFADTPEGETVKGKIE
                     TLLAGTLSADKPTQTM"
     gene            complement(737..2815)
                     /locus_tag="VLM17_10545"
     CDS             complement(737..2815)
                     /locus_tag="VLM17_10545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HSR66022.1"
                     /translation="MTAEFAGLRFAHWQVESRGEGIVVVTLDRAGEPVNALSQDVLIE
                     LGTLVERLAIDPPRGVVVRSGKPSGFVAGADIREFQQFDAQGTVKDALFRGQQVFQRL
                     AELPCPTVAAIQGFCMGGGTELALACRYRVAAGDASTRIGLPEIKLGIYPGWGGSVRL
                     PRLVGAPAAFDMMLTGRALSASAARAIGLVDKVVDAPVLLDAAIDLLARPPARPFGQR
                     FRAWATNTWLARQLLAPMLAKQVARKARREHYPAPYALIDTWHRAGGGLQALLGAECR
                     SVARLAGTPTARNLIRVFFLQERLKAQAGKDAADKSGGIRRVHVVGAGVMGGDIAAWS
                     AYKGFEVTLADREQRFIDGALARAKELFAKKVKDEGKRRAVAARLRGDLAGDGVADAD
                     LVIEAIVEQPEAKRALYQQVEPRMKADALLTTNTSSIPLAELRGHIARPAQFAGLHYF
                     NPVALMPLVEIVRHDAMAEATQQRLAAFCKALDKLPVPVAGTPGFLVNRVLFPYMLEA
                     ATAFAEGIPGPAIDRAAVKFGMPMGPIELIDTVGLDVAAGVARELAPFLGVHVPAALS
                     APPPAGQRGRKDGQGLYKWERGKPVKPALPKDYQAPSDLEDRLILPLLNEAVACLHDG
                     VVADADLLDAGVIFGTGFAPFRGGPIQYIRSTGADALLSRLQTLQARHGDRFAPRAGW
                     DSALLPASAP"
     gene            3002..3619
                     /gene="rpoE"
                     /locus_tag="VLM17_10550"
     CDS             3002..3619
                     /gene="rpoE"
                     /locus_tag="VLM17_10550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007962205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HSR66023.1"
                     /translation="MAEVESTHDLDLDLVRRVQRGDSAAFDLLVRKYQHRIAGLIGRY
                     IADWSEVQDVAQETFLRAYRAIGNFRGDAQFYTWLHRIAVNTAKNHLVAQNRRPPTED
                     VDAEDAAQYESGVRLRDTDTPERELMRQEMEQTVVRAVEALPEELRAAITMREVEGLS
                     YEEIARRMACPIGTVRSRIFRAREAIDAQLRPLMDLEHTRERPTR"
     gene            3616..>3846
                     /locus_tag="VLM17_10555"
     CDS             3616..>3846
                     /locus_tag="VLM17_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010482817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RseA family anti-sigma factor"
                     /protein_id="HSR66024.1"
                     /translation="MNNILDAGRHDGERILDHTRQQLSALVDGELAPGEAVFLMRRLR
                     HDDELAGCWERWQLAGELLRGRGGARLPDGFSA"
BASE COUNT          582 a         1397 c         1349 g          518 t
ORIGIN      
        1 cgcgctggcg cagcgctgga cggccgacgc gcaggcggta ctgcggctgg agttcgccgc
       61 cgacctcgcc ctgcaggatg ccgcgcgctt gaccgatccc cggcgaaccc gcaggctggc
      121 ggcctggttc gacgcggcga accggacgcg cgcgttgctg cgcaccaccg tccggcccga
      181 cctcgccgtc gccgaactgc tgctggcctg gcgcatggac gccggcgcgc aggcgggaca
      241 gggacgcgga acgaacgagg tcaggcgctg atggccaacg tgggcggagc acgacagggc
      301 atcctgtcgc tggcggtgaa ggacaaggcg cagctgtaca acgcctacat gccctacctg
      361 aagagcggcg gcatcttcgt gccgaccgcc aagcgctatt tcctcggcga cgaggtcttc
      421 ctgctgctga ccctgccgga atccaacgag cgcctgccgg tcgccggcaa ggtcgtgtgg
      481 gtcacgccgc ccggcgcgca gggcaaccgc gccgccggca tcggcgtgca gttcgccgac
      541 acgccggaag gcgagaccgt caagggcaag atcgagacgc tgctcgccgg cacgctcagc
      601 gcggacaagc cgacgcagac gatgtgacct tgcccgctgg aggcgtagcc ccttttagta
      661 aaaggggcgc gcggcagcgg gggtaattgg aagccaagag ctggggcccc aagtttgcaa
      721 cgcaaacttt ggggcgctag ggcgcgctcg cgggcagtag cgcgctatcc cagcccgcac
      781 gcggcgcgaa gcggtcgcca tgccgggcct gcagggtctg cagccgcgac aacagcgcgt
      841 ccgcgccggt gctgcggatg tactggatcg gcccgccgcg gaacggcgcg aacccggtgc
      901 cgaagatcac gcccgcgtcg agcaggtcgg catccgccac cacgccgtcg tgcaggcagg
      961 cgaccgcctc gttgagcagc ggcaggatca gccggtcctc gaggtcggac ggcgcctggt
     1021 agtccttcgg cagcgccggt ttcaccggtt tgccgcgctc ccacttgtac aggccctggc
     1081 cgtccttgcg gccgcgctgg cccgccggcg gcggcgccga cagcgcggcc ggcacatgca
     1141 cgccgaggaa gggcgccagt tcccgcgcga cgcccgcggc gacgtcgagg ccgaccgtgt
     1201 cgatcagttc gatcggcccc atcggcatgc cgaacttcac cgccgcgcgg tcgatggccg
     1261 gccccgggat gccttcggcg aacgcggtcg ccgcctccag catgtacggg aacagcacgc
     1321 ggttgacgag gaagccgggc gtgcccgcga ccggcaccgg cagcttgtcc agcgccttgc
     1381 agaacgcggc caggcgttgc tgcgtcgcct cggccatcgc gtcgtggcgg acgatctcga
     1441 ccagcggcat cagcgcgacc gggttgaagt agtgcaggcc ggcgaactgc gccggccgcg
     1501 cgatgtggcc gcgcagttcg gcgagcggga tcgacgaggt gttggtggtc agcagcgcat
     1561 cggccttcat gcgcggttcg acctgctggt acagcgcgcg cttggcttcc ggctgctcga
     1621 cgatggcctc gatgacgagg tcggcgtcgg ccacgccgtc gccggcgagg tcgccgcgca
     1681 ggcgcgccgc caccgcgcgg cgcttgcctt cgtccttcac cttcttcgcg aacagctcct
     1741 tcgcccgcgc cagcgcgccg tcgatgaagc gctgctcgcg gtcggcaagg gtgacctcga
     1801 accccttgta ggccgaccat gccgcgatgt cgccgcccat cacgccggcg ccgaccacgt
     1861 gcacgcgccg gatgccgccg ctcttgtcgg ccgcgtcctt gccggcctgg gccttcagcc
     1921 gctcctgcag gaagaacacc cggatcaggt tgcgcgcggt cggagtgccg gcaagcctgg
     1981 ccaccgagcg gcattcggcg ccgagcagcg cctggaggcc gcctccggcg cggtgccacg
     2041 tgtcgatcag cgcgtagggc gcgggatagt gctcgcgtcg cgccttgcgc gcgacctgct
     2101 tcgccagcat gggtgcgagc agctgccgcg cgagccaggt gttcgtcgcc caggccctga
     2161 agcgctggcc gaacggccgc gccggcggcc tggccagcag gtcgatcgcc gcgtccagca
     2221 gcaccggcgc gtcgacgacc ttgtcgacca gcccgatcgc gcgcgccgcc gaggccgaca
     2281 gcgcgcggcc ggtcagcatc atgtcgaacg ccgccggcgc gccgaccagg cgcggcaggc
     2341 gcacgctgcc gccccagccc ggatagatgc cgagcttgat ttccggcagg ccgatgcggg
     2401 tggacgcgtc gcccgctgcg acgcgatagc ggcaggcgag cgccagttcg gtgccgccgc
     2461 ccatgcagaa gccctggatc gcggcgaccg tggggcaggg cagttcggcc aggcgctgga
     2521 acacctgctg gccgcggaac agcgcgtcct tgaccgtgcc ctgcgcatcg aactgctgga
     2581 attcgcggat gtccgcgccg gcgacgaagc ccgagggctt gccgctgcgc accaccacgc
     2641 cgcgcggcgg atcgatcgcc agccgctcca ccagcgtgcc cagttcgatc agcacgtcct
     2701 gcgagagcgc gttgaccggc tcgccggcgc ggtcgagcgt caccaccacg atgccttcgc
     2761 cgcgcgactc cacctgccag tgcgcgaagc gcaacccggc gaactccgcg gtgatgcgac
     2821 ctgccgtcat ccggcaccat ccgttgcggt atgggaaggc cagtatcatc cgggcctgat
     2881 ttgaagcccg tcaatccgtc cccattaagc cgcgatcccc ggcgcgggaa cttccgcgcg
     2941 gacccgcagt cccaagcacc ggcctttcga gccggaccga catcaggagt gccggcgcgg
     3001 catggccgaa gtggaatcca cccacgacct ggacctcgac ctggtccggc gcgtgcagcg
     3061 cggcgacagc gcggcgttcg acctgctggt gcgcaagtac cagcatcgca tcgccgggct
     3121 gatcggccgc tacatcgccg actggagcga agtgcaggac gtggcgcagg aaaccttcct
     3181 gcgtgcgtac cgcgcgatcg gcaatttccg cggtgacgcg cagttctata cgtggctgca
     3241 ccggatcgcc gtgaataccg ccaagaacca tctcgtcgcc cagaaccgcc gcccgccgac
     3301 cgaggacgtc gacgccgagg atgccgcgca gtacgagtcc ggcgtgcgcc tgcgcgacac
     3361 cgacacgccc gagcgcgaac tgatgcgcca ggagatggaa caaaccgtgg tgcgcgcggt
     3421 cgaagccctg ccggaagagt tgcgcgccgc gatcaccatg cgcgaggtcg aaggcctcag
     3481 ctacgaggag atcgcgcgca ggatggcctg tccgatcggc accgtgcgct cgcgcatctt
     3541 ccgtgcgcgc gaggcgatcg atgcgcagct gcggcccctg atggatctcg agcacacccg
     3601 ggagcgaccg acccgatgaa caacatcctt gacgcaggcc gccacgacgg cgaacgcatc
     3661 ctcgaccaca cccgccagca gctgtccgcg ctggtcgacg gcgaactcgc gcccggcgag
     3721 gccgtcttcc tgatgcgccg cctgcggcac gacgacgagc tcgccggttg ctgggaacgc
     3781 tggcagctcg cgggcgaact gctgcgcggc cgcggcggcg cccgcctgcc cgacggcttc
     3841 agtgcg
//
LOCUS       DATIQC010000493         3701 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_172439, whole genome shotgun sequence.
ACCESSION   DATIQC010000493 DATIQC010000000
VERSION     DATIQC010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172439"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VLM17_10560"
     CDS             complement(<1..492)
                     /locus_tag="VLM17_10560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HSR66025.1"
                     /translation="MVRPDIDALGTPIAWASADGCLSGGNPAFARWLGVSARRLPGVP
                     LAALEVDGDGLARGLAQAADALRLRRVALAFPGNEAPRFADLYLARGEDGGWLLEAHP
                     VAEFPGEDPAVTLPSALSAALKGLAHELRNPLAGLKGAAQLLARRTEDPQSRELTGLI
                     EAEV"
     gene            746..1171
                     /locus_tag="VLM17_10565"
     CDS             746..1171
                     /locus_tag="VLM17_10565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66026.1"
                     /translation="MYRVTPDFETGIIRAMAYGTTLHAAECQRLIDEVDEAVQLTGIH
                     CVLLEVGADHAVDEPFPDKLRLANRLVNDPTITHTRFAYVPIRDADIDPVVETLAQAK
                     GFQGQRFGDRDTALEWLTASSDACLPGAAARGPDDARPG"
     gene            complement(1183..1638)
                     /locus_tag="VLM17_10570"
     CDS             complement(1183..1638)
                     /locus_tag="VLM17_10570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019466370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR66027.1"
                     /translation="MEIRPGGLDHPAVVALLREHLEGMHALSPPDSVHALGLRALHGP
                     DISFWSAWRAQALLGCAALRELDAEHGEVKSMRTLDAHRRTGVASRLLDHLLDEARRR
                     GYRRLSLETGAGAAFAPAHRLYERAGFVACAPFGAYADDPHSVFLALAL"
     gene            complement(1707..3116)
                     /gene="glnA"
                     /locus_tag="VLM17_10575"
     CDS             complement(1707..3116)
                     /gene="glnA"
                     /locus_tag="VLM17_10575"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HSR66028.1"
                     /translation="MSLEHVEKLIKDHKVEWVDLRFADMRGVQHHVTFPKSIVDASLF
                     EDGKMFDGSSIAGWKGIHQSDMVLLPDPSTAFLDPFTSDPTVVLTCDILDPATMQAYS
                     RDPRGVARRAEAFLKSSGIADTAFFGPEPEFFIFDSVRYANEMGHTFFHIDSEEAHWN
                     SAREYEGGNTGYRPGIKGGYFPVAPLDSLHDIRAEMCKTLQQVGIEVEVHHHEVANAG
                     QCEIGTRFNTLVQKADELLTMKYIIKNVAFRNGKTATFMPKPIVDDNGSGMHVHQSLA
                     KGGTNLFTGDGYGGLSQMALWYIGGIFKHARAINAFANSTTNSYKRLVPGFEAPVMLA
                     YSASNRSASCRIPYVANPKARRIEIRFPDPMQSGYLTFAALMMAGLDGIRNQIDPGAP
                     SDKDLYDLPPEEEKNIPTVCHSLDQALEALDKDREFLKAGGVFTDDLIDAYIGLKMKE
                     VTAFRAATHPLEYQMYYTI"
     gene            3414..>3701
                     /locus_tag="VLM17_10580"
     CDS             3414..>3701
                     /locus_tag="VLM17_10580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HSR66029.1"
                     /translation="MTPTLAALLLGLIEGITEFLPISSTGHLLIAERWLGHRSELFNI
                     AIQAGAILAVVLIYRARLWELAGSLLRPRGQTVHGQPARDYVGKLSVAFLVT"
BASE COUNT          529 a         1285 c         1319 g          568 t
ORIGIN      
        1 gacctcggcc tcgatcaggc cggtcagttc gcgcgactgc gggtcctcgg tgcgccgcgc
       61 cagcagctgc gccgcgccct tcaggccggc cagcggattg cgcagttcgt gggccaggcc
      121 cttgagcgcg gccgacagcg ccgacggcag ggtcaccgcc gggtcctcgc cgggaaactc
      181 cgcgaccggg tgcgcctcca gcagccagcc gccgtcctcg ccgcgtgcca ggtacaggtc
      241 ggcgaagcgc ggcgcctcgt tgccggggaa ggcgagcgca acccgacgca gccgcagcgc
      301 gtccgccgcc tgtgccaggc cgcgcgccag gccatcgccg tcgacttcca gcgccgccag
      361 cggcacgccg ggcaggcgcc gggcgctcac ccccagccag cgggcgaagg ccggattgcc
      421 gccggacagg cagccgtcgg cgctcgccca cgcgatcggg gtaccaaggg cgtcgatgtc
      481 gggccggacc attgcaccat cgtagtgcaa cggccggccg caggctggcc gaccgccgac
      541 gccgcgctcc gggcgaggcc gccggggtcc accggtgcct cccggccggc ttgggtgcgc
      601 aggagcggcc gctggcgcgg atcgggggcg tcgggttggc gaactgcccg gcccgctcgc
      661 ttcgcgcgcg cgcgcggccg gcctcaccgc acattgagcg gcgcgcgcgt ccaatgcccg
      721 cgccgcgttc ttgccggagc cctccatgta ccgcgtcacg cccgatttcg aaaccggcat
      781 catccgggcc atggcgtacg gaaccacgtt gcatgcggcc gaatgccagc ggctgatcga
      841 cgaggtcgac gaagccgtgc agctgaccgg catccattgc gtcctgctgg aggtcggcgc
      901 cgaccacgcc gtcgacgagc cgttccccga caagctgcgt ttggccaacc gcctggtcaa
      961 cgatcccacg atcacgcaca cgcgcttcgc ctacgtgccg atccgcgatg cggacatcga
     1021 tccggtggtc gagacgctgg cgcaggccaa gggcttccag ggacaacgct tcggggaccg
     1081 cgacaccgcg ctcgaatggc tgaccgcatc gagcgacgcg tgcctgcccg gggctgccgc
     1141 gcgcgggccc gacgacgcgc gtccggggta gcggcgccgc aactagagcg ccagcgccag
     1201 gaacacgctg tggggatcgt cggcgtaagc accgaacggc gcgcaggcga cgaagccggc
     1261 gcgctcgtac aggcggtgcg cgggggcgaa ggccgcgccc gcgccggttt ccaggctgag
     1321 ccgtcggtag ccgcgacggc gggcctcgtc gagcaggtgg tccagcaggc gcgaggcgac
     1381 gccggtgcgg cgatgtgcgt cgagcgtccg catcgatttc acttcgccgt gttccgcgtc
     1441 cagttcgcgc aacgccgcgc agccgagcag cgcctgcgca cgccatgcgc tccagaagct
     1501 gatgtcgggc ccgtgcaggg cgcgcaggcc cagcgcgtgc acgctgtccg gcggagacaa
     1561 tgcgtgcatg ccctccaggt gttcgcgcag cagcgcgacg acggccgggt ggtccaggcc
     1621 gcccgggcgg atctccatgc aggggcctcc accgggaaca gccggcggcg ctcgcgcgcc
     1681 gccgggttgc cgtccggcgc gcgcgatcag atcgtgtagt acatctggta ttcgagcgga
     1741 tgggtcgccg cgcggaacgc ggtgacttcc ttcatcttca gcccgatgta cgcgtcgatg
     1801 aggtcgtccg tgaacacgcc gcccgccttg aggaactcgc ggtccttgtc gagcgcttcc
     1861 agcgcctggt ccagcgagtg gcacacggtc gggatgttct tctcctcttc cggcggcagg
     1921 tcgtacaggt ccttgtcgga aggagcgccc gggtcgatct ggttccggat gccgtccagg
     1981 ccggccatca tcagcgcggc gaaggtgagg tagccggact gcatcgggtc ggggaagcgg
     2041 atctcgatgc ggcgcgcctt cgggttggcg acgtacggga tgcggcacga cgcggagcgg
     2101 ttcgacgccg agtacgccag catcaccggc gcctcgaagc ccggcaccag gcgcttgtag
     2161 gagttggtgg tcgagttggc gaacgcgttg atcgcgcgcg cgtgcttgaa gatgccgccg
     2221 atgtaccaca gcgccatctg cgacaggccg ccgtagccgt cgccggtgaa caggttggtg
     2281 ccgcccttgg cgagcgactg gtgcacgtgc atgccgctgc cgttgtcgtc gacgatgggc
     2341 ttcggcatga aggtcgcggt cttgccgttg cggaaggcga cgttcttgat gatgtacttc
     2401 atcgtgagca gctcgtcggc cttctgcacg agcgtgttga agcgggtgcc gatctcgcac
     2461 tggccggcgt tcgcgacttc gtggtggtgc acctcgacct cgatgccgac ctgctgcagg
     2521 gtcttgcaca tctcggcgcg gatgtcgtgc agcgagtcca gcggcgcgac cgggaagtag
     2581 ccgcccttga tgcccggccg gtagccggtg ttgccgcctt cgtattcgcg cgcggagttc
     2641 cagtgcgcct cttccgaatc gatgtggaag aaggtgtggc ccatttcatt cgcgtagcgc
     2701 accgagtcga agatgaagaa ctcgggctcg ggaccgaaga acgcggtgtc cgcgatgccg
     2761 ctggacttga ggaaggcctc ggcgcggcgg gcgacgcccc gcggatcgcg cgagtacgcc
     2821 tgcatggtcg ccgggtcgag gatgtcgcag gtgaggacga cggtcggatc cgaggtgaac
     2881 ggatccagga acgcggtcga cggatccggc agcagcacca tgtcggactg gtggatgccc
     2941 ttccagccgg cgatcgagct gccgtcgaac atcttgccgt cctcgaacag ggaggcatcg
     3001 acgatggatt tcgggaaggt cacgtggtgc tgcacgccgc gcatgtcggc gaagcgcagg
     3061 tcgacccact cgaccttgtg gtccttgatc agtttctcga cgtgctcgag ggacatggga
     3121 actccggagg ctgggctggg cggggatgga gctggcgatg ccaacgccag ggagatagca
     3181 aacggcgtgc cagcccactc ccgctgccaa gtggttgatc cgcaaggtcc tccgccgcgt
     3241 ggcggacaag ggccgttcca tcatggtgca tgcgccaaga ctattggcac caccgcggtg
     3301 caaggcgcgg ctccgctatg ctcgcccgcg atcctgcgcc gcttcggccc gtccccccgc
     3361 cgggccggcc agcgacgcgg cccggccttc ccgcctccct tttccggccc gccatgaccc
     3421 cgaccctcgc cgccctcctg ctcggcctca tcgaaggcat caccgagttc ctgcccatct
     3481 ccagcaccgg ccacctgctg atcgccgagc gctggctcgg ccaccgcagc gagctgttca
     3541 acatcgcgat ccaggccggc gcgatcctcg cggtggtgct gatctaccgc gcgcgcctgt
     3601 gggaactggc cggcagcctg ctgcgcccgc gcgggcagac cgtgcacggg cagccggcgc
     3661 gcgactacgt cgggaagctt tcggtggcct tcctggtcac c
//
LOCUS       DATIQC010000494         4649 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_208551, whole genome shotgun sequence.
ACCESSION   DATIQC010000494 DATIQC010000000
VERSION     DATIQC010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4649
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_208551"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..1516
                     /gene="pyk"
                     /locus_tag="VLM17_10585"
     CDS             14..1516
                     /gene="pyk"
                     /locus_tag="VLM17_10585"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003487265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HSR66030.1"
                     /translation="MPPSQGSGPPGAAQACPRRTKIVATLGPASSAPERIEALLQAGV
                     DVVRLNFSHGDPSAQVARALAVREAAGRVGVEVGILADLPGPKLRIERFAEGKVQLRA
                     GQRFDLIARTDAPPGGVGGVGISYLGLPDDVRAGDTLLLDDGLLQLRVEGVEGDRIVT
                     EVLTDGVLSDRKGLNRLGGGLSLGALTDRDRELIEIAAQIGVDFIAVSFCRSAADMEE
                     ARAIARRHGSDAALVAKIERTEAIENLTEIVIASDAVMVARGDLGVEIGDAELPGLQK
                     KIIRESLACNKAVITATQMLQSMVDNPIPTRAEVLDVANAVIDGTDAVMLSQETAAGN
                     YPLKAVEAMARICVGAERQFETEVDFGKAQRDLERPDQAIAMATMFLSEHIGVRAILA
                     MTESGGTARYLSRFRSNVPIYGLSRWDGARRRMALMRDVFPVAFDSRGMASRDASRQS
                     IRLLFEGGLLAEGDRVVVTSGDHMERHGATNTLRLLQVGPEGRAEGLGEL"
     gene            1595..2602
                     /locus_tag="VLM17_10590"
     CDS             1595..2602
                     /locus_tag="VLM17_10590"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HSR66031.1"
                     /translation="MSIEQLAETAQAMVARGKGIIAIDESNATIAKRFAGVGVESTEE
                     HRRAYREMLLTTPKLGDYISGAILYDETIRQATRAGVPFTKVMMQNGIIPGIKVDKGT
                     QPLAGFQGELITEGLDGLRDRLKEYYGLGARFAKWRAVINIGEDIPSGTCIEANSHAL
                     ARYAALCQEQGLVPMVEPEVLMDGDHDIGTCYEVTEVVLRSLFDALYQQNVMLEGTIL
                     KASMVVSGKDSDEQASVEEVAESTLMCLKTAVPAILPGIVFLSGGQSDEDATAHLDAM
                     NRMGPNPWPLSFSYGRAMQSAALKIWAQDTAANVAKAQAMVYERAKDNGMAALGQWKK
                     G"
     gene            2973..3515
                     /locus_tag="VLM17_10595"
     CDS             2973..3515
                     /locus_tag="VLM17_10595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66032.1"
                     /translation="MKKPRITFANVDSLQQAVDAAARLHRLGLVLFIAACVLVTLPHA
                     HMPAWLARAGMATTLLAFACKVLATRREIRLASLLGRIMDMPYRRAGTGKGSDHSAWS
                     AIRSYVIVSVVLTLAVALTPSMLASLGETALAHLTVMLSAAALAIQSFDNPKRLHSRI
                     MQICFSRLDLHAGDDGVLVA"
     gene            complement(3591..4547)
                     /gene="cysK"
                     /locus_tag="VLM17_10600"
     CDS             complement(3591..4547)
                     /gene="cysK"
                     /locus_tag="VLM17_10600"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HSR66033.1"
                     /translation="MALHDSILDTIGDTPVVRLHRIAPPHVTLYAKVESFNPGGSVKD
                     RLAIAIILDAEARGLLNPGDTVVEATSGNTGVALAMVCAARGYRFVATMSETFSIERR
                     KLMRAYGAKVILTPAAERGSGMVRRAEELARKHGWFLARQFTNPANPAYHRQTTAAEI
                     LRDFAGRRLDHFVTGWGTGGTLTGVAEVLRVARPEVKVTTCEPASAALLGGGEFVPHK
                     IQGWTPDFVPEVLNREVAGTLLRIDDLAARDTARRLAQEEGLFVGLSSGATIAGALEV
                     AKTARDGEVILAMAPDTGERYLSTFLFEGVNEGSDEEWLATL"
BASE COUNT          725 a         1624 c         1667 g          633 t
ORIGIN      
        1 cggggacaga cgcatgccgc ccagccaggg aagcgggccg ccgggggccg cccaggcgtg
       61 tccgcggcgc accaagatcg tagcgacgct tgggccggca tccagcgcgc ccgaacgcat
      121 cgaggctctg ctgcaggccg gtgtcgacgt cgtgcggctg aacttctcgc acggcgatcc
      181 gtctgcccag gtcgcgcgcg cgctggcggt gcgcgaagcg gccgggcgcg tcggcgtcga
      241 ggtcggcatc ctcgccgacc tgcccggacc caagctgcgc atcgagcgct tcgccgaagg
      301 caaggtgcag ctgcgcgccg gccagcgttt cgacctgatc gcccgcaccg atgcgccgcc
      361 cggtggcgtg ggtggcgtgg gcatcagcta cctcggcctg cccgacgacg tgcgcgcggg
      421 ggacaccctc ctgctcgacg atggcctgct gcagctgcgc gtcgaaggcg tcgaaggcga
      481 tcgcatcgtc accgaagtgc tgaccgacgg cgtgctgtcc gaccgcaagg gcctcaaccg
      541 gctcggcggc ggcctgtcgc tgggcgcgct caccgaccgc gaccgcgagc tgatcgagat
      601 cgccgcgcag atcggcgtcg acttcatcgc cgtgtcgttc tgccgcagcg ccgccgacat
      661 ggaggaggcg cgggcgatcg cgcgccggca tggcagcgac gccgccctgg tggccaagat
      721 cgagcgcacg gaggcgatcg agaacctgac cgaaatcgtg atcgccagcg acgcggtgat
      781 ggtcgcgcgc ggcgacctcg gcgtggagat cggcgacgcc gaactgcccg gcctgcagaa
      841 gaagatcatc cgcgagtcgc tggcgtgcaa caaggcggtg atcaccgcca cgcagatgct
      901 gcagtcgatg gtcgacaacc cgatcccgac ccgcgccgaa gtgctcgacg tcgccaacgc
      961 ggtgatcgac ggcaccgacg cggtgatgtt gtcgcaggaa accgcggccg ggaactaccc
     1021 gctcaaggcg gtcgaggcga tggcgcgcat ctgcgtcggc gccgagcgcc agttcgaaac
     1081 cgaggtcgac ttcggcaagg cgcagcgcga cctcgagcgc cccgaccagg cgatcgcgat
     1141 ggcgacgatg ttcctgtccg agcacatcgg cgtgcgcgcg atcctcgcga tgaccgaatc
     1201 gggcggcacc gcgcgctacc tctcgcggtt ccgctccaac gtgccgatct acggcctgtc
     1261 gcgctgggac ggcgcgcgcc ggcggatggc gctgatgcgc gacgtgttcc cggtcgcgtt
     1321 cgacagccgc ggcatggcct cgcgcgacgc ctcgcggcag tcgatccgcc tgctgttcga
     1381 gggtggcctg ctggccgagg gcgaccgcgt cgtcgtcacc agcggcgacc acatggagcg
     1441 gcacggcgcg accaacacgc tgcgactgct gcaggtcggg ccggaggggc gggcggaagg
     1501 cctgggcgag ctctgacggc ggccgtacgc ggcggccggc cgggcccccc gggctataat
     1561 ccggggttcc cagccgccaa tccgcaggac gccaatgagc atcgaacagc ttgccgagac
     1621 cgcccaggcg atggtcgccc ggggcaaggg catcatcgcg atcgacgaat ccaacgccac
     1681 gatcgccaag cgcttcgccg gcgtcggcgt ggagagcacg gaagagcatc gccgcgccta
     1741 ccgcgagatg ctgctgacca cgcccaagct cggcgactac atctccggcg cgatcctgta
     1801 cgacgaaacc atccgccagg cgaccagggc cggcgtgccg ttcaccaagg tgatgatgca
     1861 gaacgggatc atcccgggca tcaaggtcga caagggcacg cagccgctgg ccggcttcca
     1921 gggcgagctg atcaccgaag gcctcgacgg cctgcgcgac cgcctcaagg agtactacgg
     1981 cctgggcgcg cgcttcgcaa agtggcgcgc tgtgatcaac atcggcgagg acatcccgtc
     2041 gggcacctgc atcgaggcca acagccacgc gctggcgcgc tacgccgcgc tgtgccagga
     2101 gcagggcctg gtgccgatgg tggaaccgga agtgctcatg gacggcgacc acgacatcgg
     2161 cacctgctac gaggtcaccg aagtcgtgct gcgctcgctg ttcgacgcgc tgtaccagca
     2221 gaacgtcatg ctcgaaggca ccatcctcaa ggcgtcgatg gtcgtgtccg gcaaggacag
     2281 cgacgagcag gcgtcggtcg aggaagtcgc cgagtcgacc ctgatgtgcc tgaagaccgc
     2341 ggtgccggcg atcctgccgg gcatcgtgtt cctctccggc ggccagagcg acgaggacgc
     2401 gaccgcgcac ctcgatgcga tgaaccgcat gggcccgaac ccgtggccgc tgtcgttctc
     2461 ctacggccgc gcgatgcagt cggcggcgct caagatctgg gcgcaggaca ccgccgccaa
     2521 cgtcgccaag gcgcaggcga tggtgtacga gcgggcgaag gacaacggca tggccgcgct
     2581 ggggcagtgg aagaagggct gatccctttt ccagcggacc aagggaacgc cggcccgcgc
     2641 cggcgttttt tttcgcctcg aagcagcagt ccccgccgca ccggccgctg gacggcggcg
     2701 ccgaagggac ggcgttccac ggtcccacgg ccacgggttc cggccgagag gctgaatgcg
     2761 cgccgggcgg gccgcgaccc gaatgcccgg tgaagaaagc gtgatcggtg gctggacccg
     2821 caccgcgcgc agcatcgaca atggacgcgg gcgccgggaa cacgcgcgcg cggtccgcat
     2881 cgctcaaccg ggcgccggcc gcgccgatat ccaggacacc agccaccgcg cgacggatgc
     2941 ttccttccgg cgcgccgcca gcagtacacg ccatgaaaaa gccacgcatc accttcgcca
     3001 acgtcgacag cctgcagcag gcggtcgacg cggccgcgcg cctgcatcga ctcggcctgg
     3061 tgttgttcat cgccgcctgc gtgctggtca cgttgccaca cgcgcacatg ccggcgtggc
     3121 tggcgagggc cggcatggcc acgaccctgc tcgcgttcgc ctgcaaggtg ctggccaccc
     3181 gccgcgagat ccgcctcgcc agcctgctcg gccggatcat ggacatgccg taccggcgcg
     3241 ccggcaccgg caagggcagc gaccacagcg catggagcgc gatccgctcc tacgtgatcg
     3301 tgtcggtggt gctcacgctc gcggtcgcgc tcacccccag catgctcgcc tcgctcggcg
     3361 aaacggcgct ggcccacctc accgtgatgc tgagcgccgc cgcgctcgcg atccagtcgt
     3421 tcgacaaccc caagcgcctg cacagccgga tcatgcagat ctgcttcagc cgcctcgacc
     3481 tgcacgcggg cgacgacggc gtgctggtgg cctgagccgg gccgccggcg caaacgaaaa
     3541 aagcgcccgc acgggcgctt ttttcttgcc ggggtcgcag ggaggcggcg tcagagcgtg
     3601 gccagccact cctcgtccga gccctcgttg acgccttcga acaggaaggt cgacaggtag
     3661 cgctcgccgg tatccggcgc catcgcgagg atcacctcgc catcccgtgc ggtcttcgcc
     3721 acttccagcg cgccggcgat cgtggcgccg gaggacaggc cgacgaacag gccttcctcc
     3781 tgcgccagcc gccgcgcggt gtcgcgcgcg gcgaggtcgt cgatccgcag cagcgtgccg
     3841 gccacctcgc ggttgagcac ctcgggcacg aagtcgggcg tccagccctg gatcttgtgc
     3901 gggacgaact cgccgccgcc gagcagcgcg gcgctggccg gttcgcaggt ggtcaccttc
     3961 acttccgggc gggcgacacg cagcacctcg gcgaccccgg tcagcgtgcc gcccgtgccc
     4021 cagccggtga cgaagtggtc gaggcggcgg ccggcgaagt cgcgcaggat ttccgccgcg
     4081 gtggtctggc ggtggtaggc gggattggcc gggttggtga actggcgggc gaggaaccag
     4141 ccatgcttgc gtgcgagttc ctcggccctg cgcaccatgc cgctgccgcg ctcggcggcg
     4201 ggcgtgagga tgaccttggc cccgtacgcg cgcatcagct tgcgccgttc gatcgagaag
     4261 gtctccgaca tcgtggccac gaaccggtag ccgcgcgccg cgcacaccat cgccagcgcc
     4321 acgccggtgt tgccggaggt cgcctcgacc acggtgtcgc cgggattcag caggccgcgc
     4381 gcctcggcgt cgaggatgat cgcgatggcg aggcggtcct tgaccgagcc gccggggttg
     4441 aaggactcga ccttggcgta gagggtgacg tggggcggcg cgatgcggtg caggcggacc
     4501 acgggcgtat cgccgatggt gtcgaggatg ctgtcgtgca gggccatggc ggaactcggt
     4561 ggaaggagga ggtcggcggc gagcgcgccg catcgccggt gatcggcggc gccgggcctg
     4621 cgatcgcgtg atggcgggcg ggctcgaca
//
LOCUS       DATIQC010000495         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_455279, whole genome shotgun sequence.
ACCESSION   DATIQC010000495 DATIQC010000000
VERSION     DATIQC010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455279"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VLM17_10605"
     CDS             complement(<1..226)
                     /locus_tag="VLM17_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrA/EmrK family multidrug efflux transporter
                     periplasmic adaptor subunit"
                     /protein_id="HSR66034.1"
                     /translation="MTTEFNPNAAAPTAQKNGKRKRALLILAVVVVVGGVGWLLYHLL
                     VGRWHQDTDDAYVQGNVVSITPQATGTVVSI"
     gene            complement(223..1692)
                     /locus_tag="VLM17_10610"
     CDS             complement(223..1692)
                     /locus_tag="VLM17_10610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HSR66035.1"
                     /translation="MAPAFFRTRLLPAAVSFALLLAGCASTHGLAPGGGPLDADALAA
                     ARSLSGAHLSDAAFPRRDWWKALGDPQLDALVDEALAGTPTLALADARARQAIAQAGL
                     ADAERQPVVAASGQYSGIRIPESIAPPPLGGSYKGIFLLGLNFKYSPDLWGGQRAKWQ
                     AALGQARAAEVEAQDARLLIASNVAKAYVGLAQAYAALDVAQAEQDRSGGLLELGRQR
                     VRAGLDNQLTLRQAESAVDAAMAQQQAAQQQIDAARNALAALLGEGPDRGLDIARPAL
                     LSAPAAGVPDVVPSELLGHRPDVVAARWQVEAAAHGIKAAKAAFYPTVNLSALVGVAA
                     GTLGDLFDTKALVAQGGPAVSLPIFDGGRLRNTLASNDAQYDLAVAGYNQALVGALRE
                     VVDALQAARSLDDQLASTRQARDAAQAALALATQRYKAGLATRLDVLAAQQPLLRIDQ
                     QLAALRAQRLDAAIDLDRALGGGLAPTSPDTDIARAPTP"
     gene            complement(1695..>2052)
                     /locus_tag="VLM17_10615"
     CDS             complement(1695..>2052)
                     /locus_tag="VLM17_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HSR66036.1"
                     /translation="RAAAGHALNFSQFITIKTLAGGAAGVTELARAAYLHPGAMTRLL
                     DKLEARGILERVADPADRRALHVHLTPAGAAIWKDINECAMRVRERATAGMSDAEQAE
                     LTRLLMQVRDNFSSGT"
BASE COUNT          256 a          704 c          814 g          278 t
ORIGIN      
        1 cgatgctcac caccgtgccc gtggcctgcg gcgtgatgct gacgacattg ccctgcacgt
       61 aggcgtcgtc ggtgtcctgg tgccagcggc cgaccagcag gtggtacagc agccagccga
      121 cgccgcccac gacgaccacc accgccagga tcagcagggc gcgcttgcgc ttgccgttct
      181 tctgcgccgt cggcgccgcg gcattcgggt tgaactcggt ggtcatggcg tgggggccct
      241 ggcgatgtcg gtgtcgggag aggtgggagc gagaccgccg ccgagcgcgc ggtcgaggtc
      301 gatggcggcg tccaggcgct gcgcgcgcag cgcggcgagc tgctggtcga tccgcagcag
      361 cggctgctgc gcggcgagca cgtcgagccg ggtggcgagg ccggccttgt agcgctgggt
      421 cgccagcgcg agcgcggcct gcgcggcgtc gcgcgcctgc cgggtcgagg cgagctggtc
      481 atcgagcgag cgcgccgcct gcagcgcatc gaccacttcg cgcaacgcgc cgaccagcgc
      541 ctggttgtag ccggcgacgg cgaggtcgta ctgggcgtcg ttcgacgcga gcgtgttgcg
      601 caggcggccg ccgtcgaaga tcggcaggct gaccgccggg ccgccctgcg ccacgagggc
      661 cttggtgtcg aacaggtcgc cgagcgtgcc ggcggcgacg ccgaccagcg cgctcaggtt
      721 gacggtcgga tagaacgcgg ccttcgcggc cttgatgccg tgcgcggcgg cttcgacctg
      781 ccagcgtgcg gcgaccacgt cgggacgatg gccgagcagt tcgctcggca ccacgtcggg
      841 cacgccggcg gcaggcgccg acagcagcgc cggcctggcg atatccaggc cgcggtcggg
      901 gccctcgccg agcagcgcgg cgagcgcgtt gcgcgcggcg tcgatctgct gctgcgccgc
      961 ctgttgctgg gccatcgccg cgtcgacggc gctctcggcc tggcgcaggg tgagctggtt
     1021 gtcgagcccg gcgcgcacgc gctggcggcc gagctcgagc aggccgccgg agcggtcctg
     1081 ttcggcctgc gcgacgtcga gcgccgcgta cgcctgggcg aggccgacat aggccttcgc
     1141 cacgttggag gcgatcagca gccgcgcgtc ctgcgcctcg acttcggcgg cgcgcgcctg
     1201 gccgagcgcg gcctgccact tcgcgcgctg gccgccccac aggtcgggcg aatacttgaa
     1261 gttgagcccg agcaggaaga tgcccttgta cgaaccaccg agcggcggcg gcgcgatcga
     1321 ttcgggaatg cggatgccgg agtactgccc gctcgcggcg acgaccggct ggcgttcggc
     1381 atcggcgagc ccggcctgcg cgatcgcctg gcgcgcgcgc gcatcggcga gcgcgagcgt
     1441 cggcgtgccg gccagggcct cgtcgaccag cgcatcgagc tgcggatcgc cgagcgcttt
     1501 ccaccagtcg cgccggggga aggccgcgtc ggacagatgc gcgccggaca ggctgcgcgc
     1561 cgcggcgagc gcgtcggcgt ccagcggccc gccccccggc gcgaggccgt gggtgctggc
     1621 gcaaccggcg agcagcaatg cgaaggacac ggcggccgga agcagccggg tgcggaagaa
     1681 ggcgggggcc attcctaggt tccggaagag aagttgtcgc ggacctgcat gagcaggcgg
     1741 gtcagttcgg cctgctcggc gtcgctcatg ccggcggtgg cgcgttcgcg cacgcgcatg
     1801 gcgcactcgt tgatgtcctt ccatatcgcg gcgccggccg gggtcagatg aacgtgcagg
     1861 gcgcggcggt cggccgggtc ggcgacgcgc tcgaggatgc cgcgcgcctc cagcttgtcg
     1921 agcaggcggg tcatcgcgcc ggggtgcagg taggccgcgc gcgccagttc ggtaacgccg
     1981 gcggcgccac cggcgagcgt cttgatggtg atgaactggc tgaagttgag cgcgtgaccg
     2041 gcggccgccc gc
//
LOCUS       DATIQC010000496         2652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_667893, whole genome shotgun sequence.
ACCESSION   DATIQC010000496 DATIQC010000000
VERSION     DATIQC010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2652
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667893"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1300)
                     /gene="rimO"
                     /locus_tag="VLM17_10620"
     CDS             complement(<1..1300)
                     /gene="rimO"
                     /locus_tag="VLM17_10620"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HSR66037.1"
                     /translation="MSQQDPSTRARKVGFVSLGCPKALVDSERILTQLKVEGYDLVQS
                     YDDADVVVVNTCGFIDSAVAESLDAIGEALAENGRVIVTGCLGKRAEVIRDAHPDVLA
                     ITGPQDYASVMQAVHAVVPPSHDPFVDLMPRRTTDGDIGIKLTPKHYAYLKISEGCNH
                     RCSFCIIPSMRGDLVSRPVDEVLREAEKLAMGGVKELLVVSQDTSAYGVDLRYAERAW
                     RGAGYETRMKSLCEGLAQLGLWTRLHYVYPYPHVDDVIPLMAEGKVLPYLDIPFQHAS
                     PRILKLMKRPGAVDRTLERIQRWRATCPELTIRSTFIVGFPGETEDEFEALLDFLDEA
                     QLDRVGAFAYSPVEGAAANALPDPVPDALKQERLARFMARQAEISAGRLEAKVGTVQR
                     CLVDVVDGDLAIARSRADAPEIDGTVQIQNGLLAELRPGDF"
     gene            1428..2096
                     /locus_tag="VLM17_10625"
     CDS             1428..2096
                     /locus_tag="VLM17_10625"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HSR66038.1"
                     /translation="MGEWHPLTTARGDVQAWLARPEQAPRGAVVVIQEIFGVTAHIRD
                     VTERFAAAGFTAMAPAFFDVLRPGVELAYDEAGMNRGRELVGELGLDGALEVVGAAAH
                     WLRESGHRVGAVGYCWGGSVAFLANTRLGLPAVSYYGARNVPFLVEPARAPLMFHFGG
                     KDRSITPGDIDEHRARQPQAQLFVYPDAGHAFNRDVDPHVYEPASAKLAWQRTLDFFA
                     GHLR"
     gene            2093..2515
                     /locus_tag="VLM17_10630"
     CDS             2093..2515
                     /locus_tag="VLM17_10630"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HSR66039.1"
                     /translation="MKHPTTGWQLHPQLAADSHPLAAFVLSELRLMDDANYPWLVLVP
                     RVPEAGELTDLQGEQRHRLADEIDRAAHVLRAVFRPRKLNVAALGNIVPQLHVHVIAR
                     FEDDPAWPAPVWGRVAARPYTPEQLVERIARLQDALRG"
BASE COUNT          388 a          920 c          964 g          380 t
ORIGIN      
        1 cgaagtcgcc gggccggagt tcggccagca ggccgttctg gatctgcacg gttccgtcga
       61 tctccggtgc gtccgcgcgc gaccgcgcga tcgccaggtc gccgtcgacg acatcgacca
      121 ggcagcgctg cacggtgccg accttcgcct ccagccgccc tgcggaaatc tccgcctgcc
      181 tggccatgaa gcgggcgagg cgttcctgct tgagcgcgtc cgggaccggg tcgggcagcg
      241 cgttcgcggc cgcgccttcc accggcgaat aggcgaacgc gccgacgcga tcgagctgcg
      301 cttcgtcgag gaagtcgagc agcgcctcga actcgtcctc ggtctcgccg gggaagccca
      361 cgatgaaggt agaacggatg gtcagctccg ggcaggtcgc gcgccagcgc tggatgcgct
      421 cgagcgtgcg gtcgacggcg cccggccgct tcatcagctt caggatgcgc gggctcgcgt
      481 gctggaacgg gatgtcgagg tacggcagca ccttgccctc ggccatcagc ggaatgacgt
      541 cgtcgacgtg cgggtacgga tagacgtagt gcaggcgggt ccacaggccg agctgcgcga
      601 gcccctcgca gagcgacttc atgcgcgtct cgtagccggc gccgcgccag gcgcgttcgg
      661 cgtaacgcag gtcgacgcca taggcggagg tgtcctggga gacgaccagc agctccttca
      721 ccccgcccat cgccagcttc tcggcctcgc gcagcacctc gtcgaccggg cgcgagacga
      781 ggtcgccgcg catcgacggg atgatgcaga agctgcagcg gtggttgcag ccttcggaaa
      841 tcttcaggta cgcgtagtgc ttcggcgtga gcttgatccc gatgtcgccg tccgtcgtgc
      901 ggcgcggcat gaggtcgacg aagggatcgt ggctcggcgg caccaccgca tgcaccgcct
      961 gcatcacgct ggcgtagtcc tgcggaccgg tgatcgcgag cacgtcggga tgcgcatcgc
     1021 ggatgacctc ggcgcgcttg ccgaggcagc cggtgacgat gaccctgccg ttctcggcga
     1081 gcgcctcgcc gatcgcgtcc agcgactccg ccaccgccga gtcgatgaag ccgcaggtgt
     1141 tgaccaccac cacatcggca tcgtcgtagc tctgcaccag gtcgtagccc tcgaccttga
     1201 gctgggtgag gatgcgctcg gaatccacca gcgccttggg gcagccgagg ctgacgaaac
     1261 cgaccttgcg ggcgcgggtc gaagggtctt gctgggacat gggcgtggtg cgggcgacag
     1321 cggccggaaa cccgcggcgg cgggcctccc agggccaggg aaaggggcgc gaagtatagc
     1381 cgtgcgccac ccccggcccg gcgtaggatg gcggccggag gtgaaccatg ggcgaatggc
     1441 atccgttgac caccgcgcgc ggcgacgtgc aggcctggct ggcgcgacct gaacaggcgc
     1501 cgcggggcgc ggtggtggtg atccaggaaa tcttcggcgt gaccgcgcat atccgcgacg
     1561 tgaccgaacg cttcgccgcc gccggtttca ccgcgatggc accggcgttc ttcgacgtgc
     1621 tgcgcccggg cgtggaactc gcctacgacg aggccggcat gaaccgcggc cgcgagctgg
     1681 tcggcgagct cggcctcgac ggcgcgctgg aggtggtcgg cgcggccgcg cactggctgc
     1741 gcgagagcgg ccatcgcgtc ggcgcggtcg gctactgctg gggtggcagc gtcgccttcc
     1801 tcgccaacac ccggctcggg ctgccggcgg tcagctacta cggcgcgcgc aacgtgccct
     1861 tcctggtcga accggcgcgc gcgccattga tgttccactt cggtggcaag gaccgcagca
     1921 tcacgcccgg ggacatcgac gagcaccgtg cgcgccagcc gcaggcgcag ctgttcgtgt
     1981 acccggatgc cggacatgcg ttcaaccgcg acgtcgatcc gcacgtctac gaaccggcga
     2041 gcgcgaagct cgcctggcag cgcacgctcg acttcttcgc cgggcacctg cgatgaaaca
     2101 tccgacgacc ggctggcagc tgcacccgca gctggcggcg gacagccatc cgctcgcggc
     2161 cttcgtgctc agcgaactgc ggctgatgga cgacgccaac tacccctggc tggtgctggt
     2221 gccgcgcgtg cccgaagccg gcgaactgac cgacctgcag ggcgagcagc gccaccgcct
     2281 cgccgacgag atcgaccgcg ccgcgcacgt gctgcgcgcg gtgttccggc cgcgcaagct
     2341 caatgtcgcc gcgctcggca acatcgtgcc gcagctgcac gtgcacgtga tcgcgcgctt
     2401 cgaggacgat cccgcctggc cggcgccggt gtggggccgc gtcgccgcgc gcccgtacac
     2461 gccggagcag ctggtggaac gcatcgcgcg cctgcaggac gcgctgcgcg gctgatggac
     2521 tggcggatcg ggcgactggg cgaccaggcc ctgctgctgg aagcgggcgg gcgcatcgac
     2581 gcggccacca gcgcgcgcgt gcatgcgctg gggcggcgga tcgcggcgca gcggcccgcc
     2641 tgggcgacgg ac
//
LOCUS       DATIQC010000497         4367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_420577, whole genome shotgun sequence.
ACCESSION   DATIQC010000497 DATIQC010000000
VERSION     DATIQC010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4367
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420577"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /locus_tag="VLM17_10635"
     CDS             complement(<1..342)
                     /locus_tag="VLM17_10635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HSR66040.1"
                     /translation="MDALLLSRIQFGFVISFHILFPAFTIGLASWLAFIEWRWLRTRD
                     DLWRDLYFFWLKIFAVSFGMGVVSGIVMSFQFGTNWAVLSERAGNILGPLLSYEVMTA
                     FFLEATFLGVML"
     gene            486..2081
                     /locus_tag="VLM17_10640"
     CDS             486..2081
                     /locus_tag="VLM17_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR66041.1"
                     /translation="MAATIEGGTRSLWVATATPPAFAPLREDTHAEVCVVGAGIAGLT
                     TAYRLALEGRDVVVLEERDLCGGQTARSTGHLCNALDDRFFQLEDMFGEDGARLAAQS
                     HSAAIDTIQDTCRSEEIDCDFERVDGYLVRGFGDTREGVLEREFSAARNAGLDVELVD
                     AGPDAFAHLGPALRFREQARLHALRYLGGLARAVQRHGGRIHCGTRVEDVDGGRGAGV
                     GTEAGPAVRADAIVVATHVPFNDRFVVHTKQAAYRTYVLALRIAHDAVPDALLWDTLD
                     PYHYVRIAHEGDTSWLLVGGEDRKSGQDDLPRAHFRELEAWTRDHFPMAGPVGYCWSG
                     HIIEPVDSLAFIGHNPGLADNVFIATGDSGNGLTHGTIAGLLLADLIGGRDSPWRRLY
                     APDRKPTRALGEYLHENANLAPYYGELLGAGEHEDIEALVPGEAAVVRHHLGKVAAWR
                     DLGGMLHLHSARCPHLGCVVHWNPVEHSWDCPCHGSRFDAHDGSVLNGPADRGLTPLR
                     AGLQPLAGESHPPPGESHPLPPL"
     gene            2169..>4367
                     /locus_tag="VLM17_10645"
     CDS             2169..>4367
                     /locus_tag="VLM17_10645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010381433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR66042.1"
                     /translation="MRRLLPLACFLLPFCTAAQPATPLTLGQVMADPDWIGNGVEDAW
                     WAWDGRSVDYTVKRDGASIRDTFQLATGGGAATRIDGAARAGLDAANPVYDEAHRHMA
                     FVRNGDVFVRDLSTGALAQLTRTNAEEALPQWSRDGGLVWRVGNDWYRWSARDGVQQA
                     ALLKAEKDPATPPKADALRDRQLRLIDTLRDDKARRDAARAQEDAWRRADPSRAPAPV
                     YLGGDVEIADSALSPDGRWLLVVTTARGGDAGQAAKLPHYVTESGYQEPEEGRTLVGR
                     NAPLPHTLWLVDMRDGKPRELKFDALPGIHDDPLAALRKAAKQEPLPGNRAVRIETDG
                     DGEGPAIHWSDDSRNVAVVVRAVDNKDRWLATVDLGSATLQSRHRLHDPAWVSWAFND
                     FGWLPANDGKAGGTLWYLSEESGWSHLYALDTAGGRARQLTSGRWEVSSPQLSADGAR
                     FDFLCNRKWPGDYEVCDVPVAGGAVRELTALDGVEGFVPSPDGRSLLVRYSGSYLPAQ
                     LAVVDAGGGAARVLTDTRKPAYKAMDWIAPQIVQVPGKHGQGTVWGKFYGPKALEPGR
                     KYPLVLFVHGAGYLQNVHARYPIYFREQMFHNLLVQHGYLVLDLDYRASSGYGRDWRT
                     AIYRDMGHPELDDYLDGLDWLVANHQGDRAHAGIYGGSYGGFMTLMALFRAPGVFQAG
                     AALRPVSDWTQYNHEYTSNILNTPELDPEAYKLSSPIEYAAGLQDHLLIAH"
BASE COUNT          674 a         1600 c         1530 g          563 t
ORIGIN      
        1 cagcatcacg ccaaggaagg ttgcctcgag gaagaacgcg gtcatcacct cgtaactcaa
       61 cagcggcccg aggatgttgc cggcgcgttc gctcagcacc gcccagttgg tgccgaactg
      121 gaagctcatc acgatgcccg acaccacgcc catgccgaac gagaccgcga agatcttcag
      181 ccagaagaag tagaggtcgc gccagaggtc gtcgcgcgtg cgcagccagc gccattcgat
      241 gaaggccagc cagctggcca ggccgatcgt gaacgcgggg aagaggatgt ggaaggagat
      301 gacgaacccg aactggatcc gagagagcag caacgcatcc aacgcggcgc ctccaacggc
      361 acgcggggag tgccgccggc gcgtattgtg cgcccgatcg ggaaaggcgg gtgaaaatgg
      421 cgcatttgac gcgcggttga ccgccgcgcg cgcacgctcg gcgcaggttc cggcggaggc
      481 gcgcgatggc tgcgaccatc gaaggcggca cccgttcgct gtgggtggcg accgcgacgc
      541 cgcccgcgtt cgcgccgctg cgcgaggaca cgcatgccga ggtgtgcgtg gtcggcgccg
      601 ggatcgccgg gctcaccacc gcctaccggc tggcgctgga ggggcgcgac gtggtcgtgc
      661 tggaggagcg cgacctgtgc ggcggacaga ccgcgcgctc caccggccac ctgtgcaacg
      721 cgctcgacga ccgcttcttc cagctggagg acatgttcgg cgaggacggc gcgcgcctgg
      781 ccgcgcagag ccactcggcc gcgatcgaca ccatccagga cacctgccgc agcgaggaga
      841 tcgactgcga cttcgaacgc gtcgacggct acctcgtgcg cggcttcggc gacacccgcg
      901 agggcgtgct ggaacgcgaa ttctcggcgg cgcgcaacgc cggcctcgac gtggagctgg
      961 tcgatgccgg gccggacgcc ttcgcccatc tcggccccgc cctgcgcttc cgcgagcagg
     1021 cgcgcctgca tgcattgcgc tatctcgggg gcctggcgcg ggccgtgcag cgccatggcg
     1081 ggcgcatcca ctgcggcacg cgcgtcgagg acgtcgacgg cggccgcggc gccggcgtgg
     1141 gcacggaggc cgggccggcg gtgcgcgccg acgcgatcgt ggtcgcgacc cacgtcccct
     1201 tcaacgaccg tttcgtcgtc cacaccaagc aggccgccta ccgcacctac gtgctggcgc
     1261 tgcggatcgc ccacgacgcc gtgcccgacg cgctgctgtg ggacaccctc gatccctacc
     1321 actacgtgcg catcgcccac gaaggcgaca ccagctggct gctcgtcggc ggcgaggacc
     1381 gcaagagcgg ccaggacgac ctgccgcgcg cgcacttccg cgaactggag gcatggacgc
     1441 gcgaccattt cccgatggcc gggccggtcg gttactgctg gtcgggccac atcatcgaac
     1501 cggtcgacag cctcgccttc atcggccaca acccgggcct ggccgacaac gtgttcatcg
     1561 ccaccggcga ttccggcaac ggcctcaccc acggcaccat cgccggactg ctgctcgccg
     1621 acctgatcgg cggccgcgac tcgccgtggc gcaggctgta cgcgcccgac cgcaagccga
     1681 cccgcgcgct cggcgaatac ctgcacgaga acgccaacct cgcgccgtac tacggcgagc
     1741 tgctcggcgc cggcgaacac gaggacatcg aagcgctggt gccgggcgaa gccgcggtcg
     1801 tgcgccacca cctggggaag gtcgccgcgt ggcgcgacct gggcggcatg ctgcacctgc
     1861 attcggcgcg ctgcccgcac ctgggttgcg tggtgcactg gaacccggtc gagcacagct
     1921 gggactgccc ctgccacggc tcgcgcttcg acgcccacga cggcagcgtg ctcaacgggc
     1981 cggcggaccg cgggctgacg ccgctgcggg ccggactgca gccgctcgcc ggcgaatcgc
     2041 acccgccacc gggcgagtcg catccgctgc cgccgctgta gccgcacacc tgcaaggcat
     2101 gacctccggc ccagccgggg cgcgggcgga ctgctaccct gcgcgggttt ttccgccgga
     2161 atcgcccgat gcgccgcctg ctgccgcttg cctgcttcct gctgcccttc tgcaccgccg
     2221 cccagccggc cacgccgctg acgctcgggc aggtgatggc cgatcccgac tggatcggca
     2281 acggcgtcga ggacgcctgg tgggcatggg acggccgcag cgtcgactac acggtcaagc
     2341 gcgacggcgc gagcatccgc gacaccttcc agctcgcgac tggcggcggc gcggccacgc
     2401 gcatcgatgg cgccgcgcgc gccggcctcg acgccgccaa cccggtctac gacgaagcgc
     2461 accggcacat ggccttcgtg cgcaatggcg acgtgttcgt gcgcgacctg tccaccggtg
     2521 cgctcgccca gctgacccgc accaacgccg aggaggccct gccgcaatgg agccgcgatg
     2581 gcggcctggt ctggcgcgtc ggcaacgact ggtaccgctg gagcgcgcgg gacggcgtgc
     2641 agcaggccgc gctgctgaag gcggaaaagg atccggcgac gccgcccaag gccgatgcgc
     2701 tgcgcgaccg ccagctgcgc ctgatcgaca ccctgcgcga cgacaaggcg cgtcgcgacg
     2761 ccgcgcgcgc gcaggaggac gcctggcgcc gcgccgaccc gagccgggcg ccggcgcccg
     2821 tctacctcgg cggcgacgtc gaaatcgccg acagcgcgct gtcgcccgac ggtcgctggc
     2881 tgctggtggt gaccaccgcc aggggcggcg acgccgggca ggcggcgaag ctgccgcact
     2941 acgtcaccga gtccggctac caggagccgg aggaaggccg caccctggtc ggccgcaacg
     3001 cgccgctgcc gcacaccctg tggctggtcg acatgcgcga tggcaagccg cgcgaattga
     3061 agttcgacgc cctgcccggc atccacgacg atccgctcgc cgcgctgcgc aaggccgcga
     3121 agcaggaacc gctgccgggc aaccgcgcgg tgcgcatcga gaccgacggc gacggtgagg
     3181 gcccggcgat ccactggagc gacgacagcc gcaacgtcgc ggtggtggtg cgcgcggtcg
     3241 acaacaagga ccgctggctc gccacggtcg acctcggcag cgccacgctg cagtcgcgcc
     3301 accgcctgca cgatccggcc tgggtcagct gggccttcaa cgatttcggc tggctgccgg
     3361 cgaacgatgg aaaagcgggc gggacgctgt ggtacctgtc ggaggaatcc ggctggtcgc
     3421 acctgtacgc gctcgatacc gccggcggcc gcgcgcgcca gctgacctcg ggccgctggg
     3481 aggtgtcctc gccgcagctg tctgcggacg gcgcgcgctt cgacttcctg tgcaaccgca
     3541 agtggccggg cgactacgag gtatgcgacg tgccggtcgc cggcggcgcc gtgcgcgagc
     3601 tcaccgcgct cgacggcgtc gaaggcttcg tgccgtcgcc cgacggccgc agcctgctgg
     3661 tgcgctattc cggcagctac ctgcccgccc agctggcggt ggtcgacgcc ggcggcggcg
     3721 ccgcgcgcgt gctcaccgac acccgcaagc cggcgtacaa ggcgatggac tggatcgcgc
     3781 cgcagatcgt gcaggtgccg ggcaagcacg gccagggcac ggtgtggggc aagttctacg
     3841 gaccgaaggc gctggagccg ggccgcaagt atccgctcgt gctgttcgtg cacggcgcgg
     3901 gctacctgca gaacgtgcac gcgcggtatc ccatctactt ccgagagcag atgttccaca
     3961 acctgctcgt ccagcacggc tacctggtgc tcgacctcga ctaccgcgcg agcagcggct
     4021 acggccgcga ctggcgcacc gcgatctatc gcgacatggg ccatcccgag ctggacgact
     4081 acctcgacgg gctcgactgg ctcgtcgcca accaccaggg cgaccgcgcg catgccggca
     4141 tctacggcgg cagctacggc ggcttcatga ccctgatggc gctgttccgc gcgccgggcg
     4201 tgttccaggc cggcgccgcg ctgcggccgg tgtcggactg gacccagtac aaccacgagt
     4261 acacctccaa catcctcaac acgccggaac tggacccgga ggcgtataag ctgtcctcgc
     4321 cgatcgagta cgccgccggc ctgcaggacc acctgctgat cgcgcac
//
LOCUS       DATIQC010000498         3581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_349770, whole genome shotgun sequence.
ACCESSION   DATIQC010000498 DATIQC010000000
VERSION     DATIQC010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349770"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..199)
                     /locus_tag="VLM17_10650"
     CDS             complement(<1..199)
                     /locus_tag="VLM17_10650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017914613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66043.1"
                     /translation="MRVALRNRFGGRVARWRGAGGFLAWWWRSLVAWLPRRWRAALGV
                     DRGRLLLQPDAEAVQLRLQDGD"
     gene            complement(205..1092)
                     /locus_tag="VLM17_10655"
     CDS             complement(205..1092)
                     /locus_tag="VLM17_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003466893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HSR66044.1"
                     /translation="MSTSVRARGAALLLVLWLVALLTALIGGFALGARIEHLQGQVLA
                     RGVVAQQAARAGIEYAIVRVGSEDPHWRWLADGRPYHWPFGDARVEVRITDEQGKVDL
                     NLASLELLAALFRQGGGDPQQAQQLAGEVLDWRDGDTLTQVGGGAEDADYAAAGLPYG
                     SKDEPFDSVAELEQLLRMPKALYARVAPFVTVYSGRANPDPAFAPPEVLTAMGYDAER
                     IIALRRAWSPESGQPAPLLPDGQSLVGNISGTYSIESRAQVVGGRVAVSRVTLRVGGN
                     GLPGSAWTPLRWEEGASPR"
     gene            complement(1089..1745)
                     /locus_tag="VLM17_10660"
     CDS             complement(1089..1745)
                     /locus_tag="VLM17_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019237947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSR66045.1"
                     /translation="MSRRPQGPARGFTLIEVLLATVLLASGLALAFATLRSATAIATR
                     GEVIERRNERLRAVEGFLRARLVAARPLPFAFDPDSGLAQRFLGEPQRMRFVADLPDY
                     LGRGGPYIHEFAVERGDGANELRLTVALTMVLGGQAVVERPVRPPEVLADHLRAVRFR
                     YRSLGADGKLGAWQERWPTQEALPLQVGIDLQGADGRDWPTLVVALPLAGSIGGVSAP
                     "
     gene            complement(1742..2206)
                     /locus_tag="VLM17_10665"
     CDS             complement(1742..2206)
                     /locus_tag="VLM17_10665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011257725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HSR66046.1"
                     /translation="MTAGVHRRGPVQRRCAQRGYTLIEVIVAFAVLALALTLLLGILS
                     GATRQVRWADEAGRAALHAQSLLDQTGVGEPLRAGHSEGAFEQGRYRWALDVAPYVDP
                     LAPPAPPRDLSAPRLWQLALTVQWGQGDDPRQRLALRSLRLVTPAPDQGNPP"
     gene            complement(2203..2676)
                     /locus_tag="VLM17_10670"
     CDS             complement(2203..2676)
                     /locus_tag="VLM17_10670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017908497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HSR66047.1"
                     /translation="MIAAARRAPRARGFTLLEVLVVLALIAVASALAAGALTGGLAGL
                     RLRSSANEIAAQLRYTRAQALATGEAQRFVIDPAAHRWRAPKDRHGDVPRALGIAFIG
                     ARETQPARGEGAIVFFPDGASTGGRVQLSAKRAAWNVDVAWLTGEVRVTRTEATR"
     gene            complement(2681..3139)
                     /gene="gspG"
                     /locus_tag="VLM17_10675"
     CDS             complement(2681..3139)
                     /gene="gspG"
                     /locus_tag="VLM17_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010894020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HSR66048.1"
                     /translation="MRPTCSSKRSLKRSITRSPRPSAQGGFSLIEIILVVVLIGGIVA
                     FAASRILGGGDRAKFNLAKSQVQTLAEKVQQYENDTGGLPTSLDDLVAQPGNAAGWLG
                     PYAKPAELKDPWGHAFVYHAPGEGQAFDLVSLGADGQPGGSSVDADVKYQ"
     gene            complement(3243..>3581)
                     /locus_tag="VLM17_10680"
     CDS             complement(3243..>3581)
                     /locus_tag="VLM17_10680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HSR66049.1"
                     /translation="IGRNVLGNRTLAEAVDAASGEVKSGVGLSAALARGKVFPRLALQ
                     MIQVGEESGALDTMLLKTADTFEQETSLALDRMLAALVPAVTLLMASIVGIVILAVLT
                     PIYDLTNVIQ"
BASE COUNT          490 a         1334 c         1320 g          437 t
ORIGIN      
        1 cgtcgccatc ctgcaggcgc agctgcacgg cctcggcatc gggctgcagc agcaggcggc
       61 cacggtcgac gccgagcgcg gcgcgccagc gccgcggcag ccacgcgacc agcgagcgcc
      121 accaccacgc gagaaagccg cccgcgccgc gccagcgggc gacgcggcca ccgaaacggt
      181 tccgcagggc gacgcgcatg tccatcagcg tggcgatgct ccttcctccc agcgcaacgg
      241 cgtccaggcc gaccccggca ggccgttgcc cccgacgcgc agcgtcaccc gcgacaccgc
      301 gacgcgccct ccgacgacct gcgcacggct ctcgatacta tacgtaccgc tgatgttgcc
      361 cacgagcgac tgcccgtccg gcaacagcgg cgcgggctgc cccgactcgg gcgaccacgc
      421 gcgacgcaac gcgatgatgc gttcggcatc gtagcccatg gcggtgagca cctccggcgg
      481 agcgaacgcc ggatccgggt tggcgcggcc gctgtacacg gtgacgaagg gcgccacccg
      541 cgcgtacagg gccttgggca tgcgcagcag ctgttccagc tcggcgacgc tgtcgaaggg
      601 ctcgtccttg ctcccgtagg gcagcccggc cgcggcgtag tcggcatcct cggcgccacc
      661 gcccacctgg gtcagggtgt cgccgtcgcg ccagtcgagc acctcgccgg ccagctgctg
      721 cgcctgctgc gggtcgccgc cgccctggcg gaacagcgcg gcgagcagtt cgagcgaggc
      781 gaggttgagg tcgaccttgc cctgctcgtc ggtgatgcgc acctccaccc gcgcgtcccc
      841 gaacggccag tggtaggggc ggccgtcggc cagccagcgc cagtgcggat cctcgctgcc
      901 gacgcgcacg atcgcgtatt cgatgccggc gcgcgccgcc tgctgggcga ccacgccgcg
      961 cgccagcacc tgtccctgca ggtgctcgat gcgcgcgccg agcgcgaagc cgccgatcag
     1021 cgcggtgagc agcgcgacca gccacagcac cagcaggagg gcggcgccgc gcgcgcgcac
     1081 ggaagtgctc atggcgccga caccccgccg atgctgcccg ccaggggtag tgcgaccacc
     1141 agcgtcggcc agtcgcggcc gtcggcgccc tggaggtcga tcccgacctg cagcggcagg
     1201 gcttcctggg tcggccaccg ctcctgccac gcgccgagct tgccgtcggc gcccagcgag
     1261 cgatagcgga agcgcaccgc gcgcaggtgg tccgcgagca cctcgggcgg gcgcaccggg
     1321 cgttcgacca ccgcctggcc gccgagcacc atcgtcagcg ccacggtcag gcgcagctcg
     1381 ttggccccgt cgccgcgttc gaccgcgaac tcgtggatgt aggggccgcc acggccgagg
     1441 tagtcgggca ggtcggcgac gaagcgcatg cgctgcggtt cgccgaggaa gcgttgcgcc
     1501 agcccgctgt cgggatcgaa ggcgaacggc agcgggcgcg ccgcgaccag gcgcgcgcgc
     1561 aggaagcctt cgaccgcgcg caggcgctcg ttgcggcgct cgatcacttc gccgcgggtc
     1621 gcgatcgcgg tggccgagcg cagcgtggcg aaggcgagcg cgaggcccga ggcgaggagc
     1681 acggtggcga gcagcacctc gatcagggtg aagccgcgcg cggggccctg gggacgccgg
     1741 ctcacggcgg attcccctgg tccggcgccg gcgtcaccag ccgcaggctc cgcagcgcca
     1801 gccgctggcg cggatcgtcg ccctgtcccc actgcacggt cagcgcgagc tgccacaggc
     1861 gcggcgcgct gaggtcacgc ggcggcgccg gcggcgccag gggatcgacg tagggcgcca
     1921 cgtccagcgc ccagcggtag cggccctgct cgaacgcgcc ttcgctgtgg cccgcgcgca
     1981 gcggctcgcc gacgcccgtc tggtcgagca gcgactgcgc gtgcagcgcc gcgcgcccgg
     2041 cctcgtccgc ccagcgcacc tgcctggtcg cgccggacag gatgccgagc agcagcgtca
     2101 gcgcgagcgc gagcaccgcg aaggcgacga tgacctcgat gagggtgtag ccgcgctgcg
     2161 cgcaccggcg ctgcacgggt ccgcgacggt ggacgcctgc ggtcaccgcg tcgcctccgt
     2221 gcgcgtcacc cgcacttcgc cggtgagcca ggcgacatcg acgttccacg ctgcgcgttt
     2281 cgcgctgagc tgcacgcggc cgccggtgga ggcgccgtcc gggaagaaca cgatcgcgcc
     2341 ctcgccccgc gccggctggg tctcgcgcgc gccgatgaag gcgatgccga gcgcgcgcgg
     2401 cacgtcgccg tgccggtcct tcggcgcgcg ccagcggtgc gcggcgggat cgatcacgaa
     2461 gcgctgcgcc tcgccggtgg cgagcgcctg cgcgcgggtg tagcgcagct gcgcggcgat
     2521 ctcgttggcg ctggagcgca gccgcaggcc cgccagtccg ccggtcagcg ccccggccgc
     2581 gagcgcgctg gcgaccgcga tcaacgcgag caccaccagc acctcgagca gggtgaatcc
     2641 gcgcgcgcgc ggcgcacggc gcgcggcggc gatcatcggc ttactggtac ttgacgtccg
     2701 cgtcgacgct gctgccgccc ggctgcccgt cggcgcccag actgacgagg tcgaacgcct
     2761 gcccttcgcc cggcgcgtgg tagacgaacg cgtgtcccca cgggtccttc agctcggccg
     2821 gcttggcgta cgggccgagc cagccggcgg cgttgccggg ctgggcgacg aggtcgtcga
     2881 gcgaggtcgg caggccgccg gtgtcgttct cgtactgctg caccttctcg gccagcgtct
     2941 gcacctgcga cttggcgagg ttgaacttgg cgcggtcgcc gccgccgagg atgcggctgg
     3001 cggcgaaggc gacgatgccg ccgatcagca ccaccaccag gatgatctcg atcaggctga
     3061 aaccgccctg cgccgacggc cggggcgagc gggtgatgga gcgcttcagg gagcgcttgc
     3121 tggagcaggt cgggcgcatg gcgggcatcc ggaaggaagg caattggcca atgctgccac
     3181 ggaaggctga acagggcgcg aaatcgaccg cccggcgcaa ccggcgcgca tcggcgcagc
     3241 gctcactgga tcacgttggt caggtcgtag atcggcgtca gcacggcgag gatgacgatg
     3301 ccgacgatgc tcgccatcag cagcgtcacc gccggcacca gcgcggcgag catgcggtcg
     3361 agcgcgagcg aggtttcctg ctcgaaggtg tcggcggtct tgagcagcat ggtgtcgagc
     3421 gcgcccgact cctcgccgac ctggatcatc tgcagcgcca gccgcgggaa gaccttgccc
     3481 ctggccagcg cggccgacag cccgacgccg ctcttgacct cgccgcttgc cgcgtccacc
     3541 gcctcggcga gcgtgcggtt gccgagcacg ttgcggccga t
//
LOCUS       DATIQC010000499         5195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_526397, whole genome shotgun sequence.
ACCESSION   DATIQC010000499 DATIQC010000000
VERSION     DATIQC010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5195
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526397"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..755
                     /locus_tag="VLM17_10685"
     CDS             <1..755
                     /locus_tag="VLM17_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015471441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HSR66050.1"
                     /translation="LLRAAGGGHRALVDLLLARGADPRRAANTGATPLSAAVSMRHVE
                     IVDRLLAAGAGLEQRLPGEVTVLMLAAALGLPDVCARLLQAGANVHAQDAQGLTPLHC
                     ATLFGFGARERPRLVALLDTLLLAGAEADAAAAGNVTPLLLLLGARAEPGSAVDEDVA
                     LAGLERLLDEDVALEAQDPRGFGPLHLAALHGLLRLTQRLLRAGCNPDLRDALNRTPR
                     EIAVMRGFVDVAAEFAPQAPGVSMARFLREPR"
     gene            788..1045
                     /locus_tag="VLM17_10690"
     CDS             788..1045
                     /locus_tag="VLM17_10690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66051.1"
                     /translation="MLDALRAVLARAGEVSRMDDATFDEFCRTWQQANDAIKDAIYAG
                     PAGGASWMGRADFENLWGAQSVVFMTDILPHLHAKLVAHYR"
     gene            1052..1585
                     /locus_tag="VLM17_10695"
     CDS             1052..1585
                     /locus_tag="VLM17_10695"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR66052.1"
                     /translation="MLKALDVGAASGFGSRFLASLHRDHSIYSRLEVEAVDISPGRKR
                     WVQATAPDVCFTVGDLFELPSRAWDLVVCSHVVEHLDKPRPFIEKLRDVCRGFAFVYT
                     PYAEEPRIKPHLSSISEADYDGLPCEFHRIKSMGWHPNRPDDYCLLAVIDCRNAEPGN
                     TATAAAADEAKRGAGGR"
     gene            complement(1602..3413)
                     /locus_tag="VLM17_10700"
     CDS             complement(1602..3413)
                     /locus_tag="VLM17_10700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014162046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation:proton antiporter-2 (CPA2)
                     family protein"
                     /protein_id="HSR66053.1"
                     /translation="MHGGGLELALVFLLAAVVAVPVFKRFGLGAVLGYLAAGVVLGPF
                     GLRVVRDADPVLAASEIGVVMLLFVIGLELSPARLRVMRRPVFGVGGLQVLLSGGVLA
                     ALAAAAGLAWKPALIVGFGLALSSTAIGLQLLAERKALTSDHGRLGFAILLFQDLAAI
                     PLLAAIPLLGGAATHAAQPFWWLALKALLAIAALVFGGRLLLRRVFRIVARTRMPEVF
                     TATALLVVLGSAWLMQRAGLSMGLGAFLAGVLLADSEFRHELEAQIQPFEGLLLGLFF
                     MAVGMSIDLQRVAAEPLLVAAGVLVLMAVKFALLFALGLRPGGLDVRGALLLGSVLAL
                     GGEFAFVVFGEAERAGLVGGMLRDRLVAIVGVSMALTPLLMIVVSRLLPAHARRPQRP
                     FDRIPDDHPQVLIAGLGRFGQIVARLLTAQRIPYVAIEHSPEQVDFMRRFGSQLYYGD
                     PSRPELLRAAGAARVRVFVVAIDDPEANLKAVRLIRHDYPDATVFARARNRRHAWELM
                     DLGAQAVRETFHSSLKMGERVLVALGEPPGIAARRAERFREHDEALLVSQHQIYDDEA
                     ALIQTSQEARKDLEQLFAADRGEGVLGGMVEKDEEES"
     gene            3532..4563
                     /locus_tag="VLM17_10705"
     CDS             3532..4563
                     /locus_tag="VLM17_10705"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HSR66054.1"
                     /translation="MLSRLRNDFQLAILTLFGACAVLGVTPFAFYRFATGNRVAGSID
                     LSIVACIALAVLHAWRSGNAHRAASFAMAASLVGCLAIATLLGVSGLFWMYPTLLANF
                     LLVGRRQAGIASVLALGFLALHGGAFASPVQAWMFLSSAAVVVLFAFLFAHRTESQRQ
                     QLESLASHDPLTGACNRRAMERELRDAIDANRRDAVPFGLVLLDLDHFKRINDQHGHD
                     AGDRVLVEFATLARLATRKSDRLFRFGGEEFVLLLPGAGRGDLAEVAEKVRRRVAAQL
                     RCGDQGVTVSIGAAALQPGETWHAWLSRADMALYRAKAEGRDRVVVADDAAAPRVRVA
                     AGDEAAQPA"
     gene            complement(4664..>5195)
                     /gene="rho"
                     /locus_tag="VLM17_10710"
     CDS             complement(4664..>5195)
                     /gene="rho"
                     /locus_tag="VLM17_10710"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HSR66055.1"
                     /translation="AEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLT
                     GGVDSNALQRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNSEVH
                     LDRRIAEKRVYPAINLNRSGTRREDLLIEPELLQKIWILRKLLHGMDEIAAMEFLLDK
                     MKNTKSNDEFFASMKR"
BASE COUNT          744 a         1876 c         1838 g          737 t
ORIGIN      
        1 cgctgttgcg tgccgccggt ggcggccatc gcgcgctggt cgacctgctg ctcgcgcgcg
       61 gcgcggaccc caggcgcgcg gcgaataccg gtgccacgcc gctgtcggcg gcggtcagca
      121 tgcgccacgt cgagatcgtc gaccgcctgc tcgccgccgg cgccgggctc gagcagcgcc
      181 tgccgggaga ggtcaccgtg ctgatgctcg ccgccgcgct cggcctgccc gacgtgtgcg
      241 cgcgcttgct gcaggccggc gctaacgtcc acgcgcagga cgcgcagggg ctgacgccgc
      301 tgcattgcgc gacgctgttc ggcttcggcg cccgcgagcg gccgcgcctg gtcgcgctgc
      361 tcgacaccct gctgctcgcc ggcgccgaag ccgatgccgc cgcggccggc aacgtcactc
      421 cgctgctgct gctgctcggc gcgcgcgccg aaccgggcag cgccgtggac gaggacgtgg
      481 cgctcgccgg cctcgagcgt ctgctcgacg aggacgtcgc gctggaagcc caggacccgc
      541 gcggcttcgg cccgttgcac ctggccgcgc tgcatggcct gctgcggctc acccagcgcc
      601 tgctgcgcgc cggctgcaac ccggacctgc gcgacgcgct caaccgcacc ccgcgcgaaa
      661 tcgcggtgat gcgcggcttc gtcgatgtcg ccgccgagtt cgccccgcag gcgccgggcg
      721 tgtcgatggc gcggttcctg cgcgagccgc gttgaagcgc ccacacttgc aatcccggga
      781 ggacgacatg ctggatgcat tgcgcgcggt gctggcacgg gccggcgagg tcagccggat
      841 ggacgatgcg accttcgacg aattctgccg cacctggcaa caggcgaacg acgcgatcaa
      901 ggatgcgatc tatgccggac ccgccggagg agcgtcatgg atggggcgag ccgatttcga
      961 gaacctctgg ggcgcgcagt cggtggtgtt catgacggac atcctgccgc acctgcatgc
     1021 caagctggtc gcgcattacc gctgaccgca ggtgctcaag gcactggacg tgggcgcggc
     1081 gtcggggttc ggcagccggt tcctcgcttc gctccaccgc gaccattcga tttacagccg
     1141 gctcgaggtg gaggccgtcg acatcagtcc tggccgcaag cgctgggtgc aggcgacggc
     1201 cccggatgtc tgcttcaccg tcggcgacct gttcgagctt ccgtcgcggg cctgggatct
     1261 cgttgtgtgc agccacgtgg tcgaacacct ggacaaaccg cggccgttca tcgagaagct
     1321 gcgcgacgta tgccgcggct tcgccttcgt ctacacgccc tatgccgagg agccgcggat
     1381 caagccgcac ctgtccagca tcagcgaagc cgattacgac gggctgccgt gcgaattcca
     1441 ccggatcaag agcatgggct ggcacccgaa ccggcccgat gactattgcc tgctggcggt
     1501 gatcgattgt cggaacgccg agcccggcaa cacggcgacg gcggctgcag cggatgaggc
     1561 gaagcggggg gcgggcggcc gctgacggcg ctcgggatgc gctaggactc ctcttcgtcc
     1621 ttctccacca ttccgcccag cacgccctcg ccgcggtccg cggcgaacag ctgctcgagg
     1681 tccttgcgcg cttcctgcga ggtctggatc agcgccgcct cgtcgtcgta gatctggtgc
     1741 tggctgacca gcagcgcttc gtcgtgttcg cggaagcgct cggcgcggcg cgcggcgatg
     1801 ccgggcggtt cgcccagcgc gaccagcacg cgctcgccca tcttcaggct ggaatggaag
     1861 gtctcgcgca ccgcctgcgc gccgaggtcc atcagctccc acgcatgccg gcggttgcgc
     1921 gcgcgcgcga acacggtggc gtccgggtag tcgtggcgga tcagccggac cgccttgagg
     1981 ttggcctcgg ggtcgtcgat cgccaccacg aacacgcgca cgcgcgccgc gccggccgcg
     2041 cgcagcaact cgggtcggga cggatcgccg tagtagagct ggctgccgaa gcgacgcatg
     2101 aagtcgacct gttccgggct gtgctcgatc gcgacatacg ggatgcgctg cgcggtgagc
     2161 aggcgcgcga cgatctggcc gaagcggccg aggccggcga tcagcacctg cgggtggtcg
     2221 tcggggatgc ggtcgaacgg gcgctgcggg cgccgcgcgt gcgccggcaa caaccgcgag
     2281 accacgatca tcagcagcgg cgtcagcgcc atcgacacgc cgacgatcgc gaccaggcgg
     2341 tcgcgcaaca tgccgccgac caggccggcg cgctccgctt cgccgaacac cacgaaggcg
     2401 aactcgcccc ccagcgccag cacgctgccg agcagcagcg cgccgcgcac gtcgaggccg
     2461 ccgggacgca ggccgagcgc gaacagcagc gcgaacttca ccgccatcag caccagcacg
     2521 ccggcggcga cgagcagcgg ctcggcggcc acgcgctgca ggtcgatgct catgcccacc
     2581 gccatgaaga acaggccgag cagcaggccc tcgaacggct ggatctgcgc ctcgagctcg
     2641 tggcggaact ccgagtcggc gagcagcacg ccggcgagga acgcgcccag gcccatgctc
     2701 agccccgccc gctgcatcag ccaggcgctg ccgagcacca ccagcagcgc ggtggcggtg
     2761 aacacctccg gcatgcgcgt gcgcgcgacg atgcggaata cccgccgcag cagcaggcgg
     2821 ccgccgaaca ccagcgcggc gatcgccagc aacgccttca gcgccagcca ccagaacggc
     2881 tgcgccgcat gggtcgcggc gccgccgagc agcgggatcg ctgcgagcag cgggatcgcg
     2941 gccaggtcct ggaacagcag gatcgcgaag ccgagccgcc cgtggtcgct ggtcagcgcc
     3001 ttgcgttcgg cgagcagctg caggccgatc gcggtcgagg acagcgctag cccgaaaccg
     3061 acgatgagcg ccggcttcca cgccagcccg gccgcggccg cgagcgccgc gagcacgccg
     3121 ccgctgagca gcacctgcag tccgccgacg ccgaacaccg gccgccgcat cacccgcagg
     3181 cgcgccggcg agagctccag cccgatcacg aacagcagca tcaccacgcc gatctcgctg
     3241 gccgccagca ccgggtcggc atcgcgcacc acccgcagcc cgaacggccc gagcacgacg
     3301 cccgcggcga ggtagccgag caccgcgccg aggccgaaac gcttgaacac cggcaccgcg
     3361 accaccgccg cgagcaggaa gaccagtgcg agttcgagac cgccgccgtg catcgccgtc
     3421 ctccacgtcc gccccgactc tagcgcggtc cgccgccggc cggctcaagc atccgcgggc
     3481 ccggtcgatc tacactgtcg atcggccgca ctccggccag ggcgaggtcg catgctgtcc
     3541 cgactgcgca acgatttcca gctcgccatc ctgaccctgt tcggcgcctg cgccgtgctc
     3601 ggcgtcaccc cgttcgcgtt ctaccgcttc gccaccggca accgggtcgc gggcagcatc
     3661 gacctgtcga tcgtggcctg catcgcgctg gcggtgctgc atgcgtggcg cagcggcaat
     3721 gcccaccgcg cggcctcgtt cgcgatggcg gccagcctgg tcggctgcct ggccatcgcc
     3781 acgctgctgg gggtgtccgg gctgttctgg atgtatccga cgctgctggc caacttcctg
     3841 ctggtcgggc ggcgccaggc ggggatcgcc tcggtgctgg cgctgggctt cctcgcgctg
     3901 cacggcggcg ccttcgcttc gccggtgcag gcctggatgt tcctgtcctc ggccgcggtg
     3961 gtggtgctgt tcgcgttcct gttcgcgcat cgcaccgaga gccagcgcca gcagctggag
     4021 agcctcgcca gccacgatcc gctgaccggc gcctgcaacc gccgggcgat ggagcgcgaa
     4081 ctgcgcgacg cgatcgacgc caaccggcgc gacgccgtgc cattcggcct ggtgctgctg
     4141 gaccttgacc acttcaagcg gatcaacgac caacacggcc acgatgccgg cgaccgcgtg
     4201 ctggtcgagt tcgccacgct ggcgcggctg gccacgcgca agagcgaccg cctgttccgt
     4261 ttcggcggcg aggagttcgt gctgctgctg cccggcgccg ggcgcgggga cctggccgag
     4321 gtcgcggaaa aagtgcgccg gcgggtcgcc gcgcagctgc gctgcggcga ccagggggtg
     4381 accgtctcga tcggcgcggc ggcgctgcag ccgggggaga cctggcacgc gtggctgtcg
     4441 cgcgcggaca tggcgctgta ccgggccaag gccgagggtc gcgaccgggt ggtggtggcc
     4501 gacgacgcgg ccgcgccgcg cgtgcgggtc gccgccgggg acgaggccgc gcaacccgcc
     4561 tgaacagcgc ggcgcggtgg gccgacggag cggctggcaa aaagaagccc cgcggtgcgg
     4621 ggcttgcttc tcgcgcggga accggcgccc gcgagggacg cgtctatcgc ttcatggaag
     4681 cgaagaactc gtcgttcgac ttggtgttct tcatcttgtc gagcaggaac tccatcgccg
     4741 cgatctcgtc catgccgtgc agcagcttgc gcaggatcca gatcttctgc agcagctccg
     4801 gctcgatcag caggtcctcg cggcgggtgc cggagcggtt gaggttgatc gcggggtaga
     4861 cgcgcttctc ggcgatgcgg cggtccaggt gcacctcgga gttgccggtg cccttgaact
     4921 cctcgtagat cacctcgtcc atcttcgagc cggtgtcgat cagcgcggtg gcgatgatcg
     4981 tcagcgagcc gccttcctcg acgttgcgcg ccgcgccgaa gaagcgcttc ggccgttgca
     5041 gcgcgttgga gtcgacgccg cccgtgagca ccttgccgga agccggcacg acggtgttgt
     5101 aggcccgcgc gaggcgtgtg atcgagtcca gcaggatcac cacgtccttc ttgtgctcga
     5161 cgaggcgctt ggccttctcg atcaccatct cggcg
//
LOCUS       DATIQC010000500         8542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_562560, whole genome shotgun sequence.
ACCESSION   DATIQC010000500 DATIQC010000000
VERSION     DATIQC010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 8542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8542
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562560"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..979
                     /gene="phbB"
                     /locus_tag="VLM17_10715"
     CDS             239..979
                     /gene="phbB"
                     /locus_tag="VLM17_10715"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014090372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018454 - acetoacetyl-CoA reductase
                     activity [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HSR66056.1"
                     /translation="MGARVALVTGGTGGIGTAICQRLAGLGHRVANNYRNEARARAWQ
                     ERMRATGVEVALAPGDVSSPEEAAAMVGEVERQLGPVEILVNNAGITRDSTFHKMSAQ
                     QWREVIDTNLNSVFNVTRPVIEGMRERRWGRIIQISSINGLKGQYGQANYAAAKAGMH
                     GFTISLARENAKLGVTVNTISPGYIATDMVMAVPEEVRAKIIADIPTGRLGTPEEIAY
                     GVAFLAAEEAGWITGSNLDINGGHHMGW"
     gene            1111..1602
                     /gene="phaR"
                     /locus_tag="VLM17_10720"
     CDS             1111..1602
                     /gene="phaR"
                     /locus_tag="VLM17_10720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HSR66057.1"
                     /translation="MAARVIKKYPNRRLYDTEISSYITIEDVRQLIVEGEEFEVRDAK
                     SGEDLTRQVLLQIIAEHEQDGEPMLSTQLLSQLIRFYGDSLQGFMGNYLERSMQLFLD
                     QQQQFRQQMGGLLGQTPWTLMNQLTERNLQAWKEFQQNLVGAMGRSATGAREKDPDKT
                     RGG"
     gene            1728..2570
                     /gene="asd"
                     /locus_tag="VLM17_10725"
     CDS             1728..2570
                     /gene="asd"
                     /locus_tag="VLM17_10725"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006381472.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaetidylserine decarboxylase"
                     /protein_id="HSR66058.1"
                     /translation="MSLSTRLTYLLPHRVLSSLARRLAYSDHPRVSRWLVDTVTRKFG
                     VDLGEAVQPDPRAYATFNAFFTRALREGARAPDPDPRALLMPADGRISQCGPIEDGRI
                     FQAKGRSFTAAELLADEDAARPYADGAFATVYLSPRDYHRVHMPWSGRLLETVHVPGR
                     LFSVGPAAVRTVPRLFARNERLVCHFDTSFGPMAGVMVGALLVSGVETVWGGIEIPRY
                     GDAVTVKDYRGADITLDRFAEMARFNYGSTVIVLLPRGVAELAPQLAAESPVRLGERL
                     ATLR"
     gene            complement(2604..4226)
                     /locus_tag="VLM17_10730"
     CDS             complement(2604..4226)
                     /locus_tag="VLM17_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019182653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HSR66059.1"
                     /translation="MHRAVLPRLAPLACVLSALLVAMPEASASRRDEAAVAAINQQMA
                     AAESRYRRALVKIANNAPDGQKDSDAALEDMEDAVAACGSQRGCQVSTLLATYKRLLK
                     DAADGGAADADDGDDIDPADPDPDHNDAGHAGAIAFNASVPQAAHAASLLSGQGHDFD
                     AMVQYNPAVQAGIRRWLTDMRGALLSSYENYETMRQLMWPSYQRAGLPEALLFGIMAK
                     ESNGKVHATSRTGAAGPLQFMYATGRRFGLGPDATGFDTRYDPRAAAEASAAYLNERM
                     GELNHSVELALAAYNGGEGRALRVYQGSGGRSFWDADVYAQFPEETRDYVPMVVAAAW
                     LFLHPRQYGLTFPKVDARPAPLQLQQPASIYELAICLGNKGMRDGYLRPLRNLNPRYD
                     ADSWLPAGTTLNATTRIVGLYDRYCTQGPRAALAAQLVRANPATAIVRVGELQPVPMG
                     AATTPATTVQSAAVQTPPAADPPRAIAAARPQPKTRRTPGHYRVQRGETLTAIADRFQ
                     CDLRALARDNALKGPRYAIRPGQRLKLATCGD"
     gene            4399..5913
                     /locus_tag="VLM17_10735"
     CDS             4399..5913
                     /locus_tag="VLM17_10735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase HerA-like domain-containing protein"
                     /protein_id="HSR66060.1"
                     /translation="MPSPLLVGKGTTDDIPVLLLPAFGNRHGLVAGATGTGKTVTLMT
                     LAEGFSRLGVPVFLADVKGDVAGLAVPGAASDKLQQRIGEIGVGDWHPEGTPAIFWDL
                     YGKAGHPVRTTVSEMGPLLLSRILELNDTQSGVLDIVFKLADDRGLLLLDLADLRALL
                     GLVADERKDISTSYGLVSTQSIGAIQRALLQLEQQGGSRFFGEPALELSDLMRTTPDG
                     RGVASILAADQLVLKPRLYSSFLLWLLSELFEKLPEVGDLDKPKLVFVFDEAHLLFDD
                     APPALQQRIEQVVRLIRSKGVGVYFCSQFPDDVPDAILGQLGNRVQHALRAFTPRDQK
                     AVRTAAETFVANPKLDVAATIGQLGVGEALASMLGDKGIPQPVERTLVAPPRCRMGAI
                     TDAERAQVRAGSPVGMKYDQPVDRDSAAEMLARKAGAAAERAAAPAARTRAQDEAEGN
                     GFGQAVKDAVFGTSRRQGMVESMAKQAARTVGSQIGRQILRGVLGGLLGGSSRR"
     gene            6042..6212
                     /locus_tag="VLM17_10740"
     CDS             6042..6212
                     /locus_tag="VLM17_10740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66061.1"
                     /translation="MRHATLLAPFLRAESRRGLSTGMRASLEFRQMIAMHTDTFAAGP
                     HTAQQLVDAAGK"
     gene            6277..6774
                     /gene="greB"
                     /locus_tag="VLM17_10745"
     CDS             6277..6774
                     /gene="greB"
                     /locus_tag="VLM17_10745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007963950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HSR66062.1"
                     /translation="MSRWRPPQEKSTALITPEGHARLKAELDALWRTKRPEVVKALAA
                     AAAEGDRSENAEYTYRKKQLGEIDRRVRYLSKRLESLRVVDAAPADRDAVFFGASVEV
                     EDIANGELARYRIVGPDETDARQGWISIDSPLARAMLKKRIDDEFEAVLPGGPARFVI
                     VDVGY"
     gene            complement(6779..8092)
                     /locus_tag="VLM17_10750"
     CDS             complement(6779..8092)
                     /locus_tag="VLM17_10750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007508163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HSR66063.1"
                     /translation="MGGHLSRRHRQRAEPAPEPVSARGLLRQLGPGFITGASDDDPSG
                     IATYSQVGAQFGYALLWTMPFSWPLMTAIQDISARIGRITGHGIAGNLRRFYPHWLAR
                     FVVALMVAANVFNIGADFSAMGEALKLLAGGPALAHAIGFALLSLVLQVFVPYHRYAR
                     LLKWLTFALFAYVAVVFAVEVQWRQALLGAVVPKLAFTPEYLTAAIAVLGTTISPYLF
                     FWQASEEAEDTTDDPHDRPLKRAPWQARRHLRRIDLDTAVGMAFSNLVSFFIILTCAA
                     TLHASGVTGIASAAQAAEALRPIAGGFTFWIFSAGIIGTGLLAVPVLAGSAAYAVGEL
                     MQWHVSLESRPREAKGFYLVLAGAMLTGLALDFIGIDPIRALFWSAVLNGVVAAPAMV
                     MIMLLAGNRRVVAGFRLPPALRIAGWAATVVMLATTVGLLASWMA"
     gene            complement(8077..>8542)
                     /locus_tag="VLM17_10755"
     CDS             complement(8077..>8542)
                     /locus_tag="VLM17_10755"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HSR66064.1"
                     /translation="GLVERPLEFSLEALRALPNRTQITRHDCVEGWSVIGQWTGVPLA
                     HLLDLARPKPGARMVVFHCFDDLAGDGSRYYESVDLLDAYHPQTIAAHMLNGASLPIA
                     NGAPVRMRIERKLGYKQPKYVRAIELAPGYAAFGAGRGGYWEDRGYDWWGGI"
BASE COUNT         1290 a         3049 c         3036 g         1167 t
ORIGIN      
        1 cggcgtggag ggcgctgggg caggaaccag gcgccctggg cgccgccggc tcgagcgcgg
       61 cgctgctgga agcggcccgg gtcgccttcg acccctcacg catcccggcg ggcccgcagc
      121 cggtcaccgc attgcacaac atgactgcaa caggcgctgc ctagaatcgg gccgggccac
      181 tacagtccgg ccaccacagt ccgatcacgc cgcgcaacgc ggccacgagg agctcaggat
      241 gggcgcacgc gtcgcactcg tcaccggcgg gaccggcggc atcggcaccg cgatctgcca
      301 gcggctggcc ggactcggcc acagggtcgc caacaactac cgcaacgagg ccagggcgcg
      361 cgcctggcag gagcgcatgc gtgccacggg cgtcgaggtc gcgctggcgc cgggcgacgt
      421 gtcctcgccg gaggaagcgg ccgcgatggt gggcgaggtc gagcgccagc tcgggccggt
      481 cgagatcctg gtcaacaacg ccggcatcac ccgcgacagc accttccaca agatgagcgc
      541 gcagcagtgg cgcgaggtga tcgacaccaa cctcaactcg gtcttcaacg tcacccgccc
      601 ggtgatcgag ggcatgcgcg agcggcgctg gggccggatc atccagatca gctcgatcaa
      661 cggcctcaag ggccagtacg gccaggccaa ctacgcggcg gccaaggccg gcatgcacgg
      721 tttcaccatc tcgctcgcgc gcgagaacgc gaagctgggc gtcaccgtga acaccatctc
      781 gcccggctac atcgccaccg acatggtgat ggccgtgccc gaggaggtgc gcgcgaagat
      841 catcgccgac atcccgaccg gccgcctggg gacgccggag gagatcgcct acggcgtggc
      901 cttcctcgcc gccgaggagg ccggctggat caccgggtcc aacctcgaca tcaacggcgg
      961 ccaccacatg gggtggtagc ggcgaaggta accgttggct gactgcgatc ggcgtcacgg
     1021 ctcatgtaca tgaccgtggg gccttgacag cccccgttgc aagccctgct gcgctgcgcc
     1081 atgctcggcg cctagcccgg gggaacgcgc atggctgccc gcgtcatcaa gaagtatccg
     1141 aaccgtcgcc tctacgacac cgagatctcc agctacatca ccatcgagga cgtcaggcag
     1201 ctgatcgtcg agggcgagga gttcgaggtg cgcgacgcca agagcggtga ggacctgacc
     1261 cggcaggtgc tgctgcagat catcgccgag cacgagcagg acggcgaacc gatgctgtcg
     1321 acccagctgc tcagccagct gatccggttc tacggcgact cgctgcaggg cttcatgggc
     1381 aactacctgg agcgctcgat gcagctgttc ctcgaccagc agcagcagtt ccgccagcag
     1441 atgggcggcc tgctcgggca gacgccgtgg accctgatga accagctgac cgagcgcaac
     1501 ctgcaggcgt ggaaggaatt ccagcagaac ctggtcggcg cgatgggacg cagcgcgacc
     1561 ggcgcgcgcg agaaggaccc cgacaagacc cgcggcggct gagtccgtcg cggaatcgcg
     1621 ccggctccgg agccacgcgg gaggccatca tcctcccggc acgccggctc gccttgcatg
     1681 cacgcgcgcg accgccacaa tggcggcccc ctgcatgcga gcgccccgtg agcctgagca
     1741 cgcgcctgac ctacctgctg ccgcatcgcg tgctgtcctc gctcgcgcgc cggctcgcct
     1801 attccgacca tccgcgcgtc agccgctggc tggtcgacac ggtcacccgg aaattcggcg
     1861 tcgacctcgg cgaggccgtc caacccgacc cgcgcgccta cgccaccttc aatgccttct
     1921 tcacccgcgc gctgcgcgag ggcgcccgcg cgcccgaccc ggatccgcgc gcgctgctga
     1981 tgcccgccga cggccgcatc agccagtgcg ggccgatcga ggacggccgc atcttccagg
     2041 ccaagggccg ctcgttcacc gcggccgaac tgctcgccga cgaggatgcc gcgcggccgt
     2101 acgcggacgg ggcgttcgcg accgtgtacc tctcgccacg cgattaccac cgcgtgcaca
     2161 tgccgtggag cggccggctg ctggaaaccg tgcacgtgcc gggccggctc ttcagcgtcg
     2221 ggcccgcggc ggtgcgcacg gtgccgcggc tgttcgcgcg caacgagcgg ctggtgtgcc
     2281 acttcgacac cagcttcggg ccgatggcgg gggtgatggt cggcgcgctg ctggtgtcgg
     2341 gcgtggaaac cgtctggggc gggatcgaga tcccgcggta cggcgacgcg gtgacggtga
     2401 aggactatcg cggtgcggac atcacgctgg accgcttcgc cgagatggcg cgcttcaact
     2461 acggctcgac cgtgatcgtg ctgttgccgc ggggcgtggc ggagctcgcg ccgcaactgg
     2521 cggcggagtc gccggtgcgg ctgggcgagc ggctggcgac gctgcgctag cccatcgcgc
     2581 cgcgcgcgaa atgggccgcg cgctcagtcc ccgcaggtcg ccagcttgag ccgctgcccc
     2641 ggacggatcg cgtagcgcgg tcccttcagc gcattgtcgc gggccagcgc gcgcaggtcg
     2701 cactggaacc ggtccgcgat cgcggtcagg gtttcgccgc gctgcaccct gtagtggccc
     2761 ggcgtgcgcc gggtcttcgg ctgtggcctg gcggccgcaa tggccctggg cgggtccgcc
     2821 gccggcgggg tctgcaccgc cgcgctctgc accgtcgtcg ccggcgtggt ggccgcgccc
     2881 atcggcacgg gctgcagttc gccgacgcgg acgatcgcgg tggccggatt ggcgcgcacc
     2941 agctgcgccg ccagcgccgc gcgcggcccc tgcgtgcagt agcggtcgta caagccgacg
     3001 atgcgcgtgg tggcgttgag ggtggtgccc gccggcagcc agctgtcggc gtcgtagcgc
     3061 gggttgaggt tgcgcagggg gcgcaggtag ccgtcgcgca tgcccttgtt gccgaggcag
     3121 atcgcgagtt cgtagatcga cgcgggctgc tgcagctgca gcggcgcggg ccgggcgtcg
     3181 accttcggga aggtcaggcc gtactgcctg gggtgcagga acagccacgc ggcagcgacc
     3241 accatcggca cgtagtcgcg cgtctcctcg ggaaactgcg cgtacacgtc cgcatcccag
     3301 aaactgcgtc cgccgctccc ctggtaaacg cgcagcgcgc gcccctcgcc gccgttgtag
     3361 gcggccagcg cgagctcgac gctgtggttg agctcgccca tgcgctcgtt gaggtaggcg
     3421 gcgctcgctt ccgcggcggc gcgcggatcg tagcgggtgt cgaagccggt cgcgtccggg
     3481 ccgaggccga agcggcggcc ggtcgcgtac atgaactgca gcgggccggc ggcgccggtg
     3541 cgcgaagtcg cgtgcacctt gccgttggac tccttcgcca tgatcccgaa cagcagcgcc
     3601 tcgggcagcc cggcgcgctg gtacgacggc cacatcagct ggcgcatcgt ctcgtagttc
     3661 tcgtagctcg acagcagcgc gccgcgcatg tcggtgagcc agcggcggat gccggcctgc
     3721 accgccgggt tgtactgcac catcgcgtcg aagtcgtgcc cctggcccga cagcaggctg
     3781 gccgcgtgcg cggcctgcgg caccgacgca ttgaaggcga tggcgccggc gtggccggca
     3841 tcgttgtgat cgggatcggg atcggccgga tcgatgtcgt cgccgtcgtc ggcatccgcc
     3901 gccccgccgt cggcggcgtc cttgagcagg cgcttgtagg tcgcgagcag ggtcgacacc
     3961 tggcagccgc gctggctgcc gcacgcggcg accgcgtcct ccatgtcctc cagggcggcg
     4021 tcgctgtcct tctgcccgtc cggcgcgttg ttggcgatct tcaccagcgc gcggcggtaa
     4081 cgagattccg ccgcggccat ctgctggttg atcgccgcca ccgcggcctc gtcgcgacgc
     4141 gaggcggacg cctctggcat cgcgaccagc agcgcggaca ggacacaggc gagcggcgcg
     4201 aggcgcggca ggacggctcg atgcatgacg atcacgtgaa aaccccgggg aaaccgcagg
     4261 gtagccccgc ccagcctgcg caaacaaggg acctccgtcg cacccgcgcg tgccaaccgc
     4321 gcgcgtgcgc gcatgaatgc gcgcggccgg gatgcatgct tagaatcccg cgaccagaga
     4381 ctccccgcgg agcgcgcgat gccgtccccc ctcctcgtcg gcaagggcac caccgacgac
     4441 atcccggtcc tcctgctgcc ggccttcggc aaccgccatg ggctcgtcgc gggcgcgacc
     4501 ggcaccggca agacggtgac cctgatgacg ctggccgagg gcttttcgcg cctcggcgtg
     4561 ccggtcttcc tcgccgacgt gaagggcgac gtcgccgggc tcgcggtgcc gggcgccgcc
     4621 agcgacaagc tgcagcagcg gatcggcgag atcggcgtcg gcgactggca tcccgaaggc
     4681 acgcccgcga tcttctggga cctgtacggc aaggccggcc acccggtgcg caccaccgtc
     4741 agcgagatgg ggccgctgct gctttcgcgc atcctcgaac tcaacgacac ccagtccggc
     4801 gtgctcgaca tcgtgttcaa gctggccgac gaccgcggcc tgctcctgct cgacctcgcc
     4861 gacctgcggg cgctgctcgg cctggtcgcc gacgagcgca aggacatctc gacctcctac
     4921 ggcctggtca gcacgcagtc gatcggcgcg atccagcgcg cgctgctgca gctcgagcag
     4981 cagggcggca gccggttctt cggcgaaccg gcgctggagc tgtcggacct gatgcgcacc
     5041 acgcccgacg gccgcggcgt cgcctcgatc ctcgccgccg accagctggt gctcaagccg
     5101 cgcctgtatt cgagcttcct gctgtggctg ctgtcggagc tgttcgagaa gttgccggaa
     5161 gtgggcgacc tcgacaaacc gaagctggtg ttcgtgttcg acgaggcgca cctgctgttc
     5221 gacgacgcgc cgcccgcatt gcagcagcgc atcgaacagg tcgtgcgcct gatccgttcc
     5281 aagggcgtgg gggtgtactt ctgctcgcag ttccccgacg acgtgcccga cgccatcctc
     5341 gggcagctcg gcaaccgcgt gcagcacgct ctgcgcgcgt tcaccccgcg cgaccagaag
     5401 gcggtgagga cggcggcgga aacgttcgtc gccaacccga agctcgacgt ggcggcgacc
     5461 atcggccagc tcggcgtcgg cgaggcgctg gcgtcgatgc tcggcgacaa gggcatcccg
     5521 cagccggtcg aacgcacgct ggtcgcgccg ccgcgctgcc gcatgggcgc gatcaccgac
     5581 gccgagcgcg cgcaggtgcg cgccggcagc ccggtgggca tgaagtacga ccagccggtc
     5641 gatcgcgatt cggcggccga gatgctcgcg cgcaaggccg gcgccgccgc cgaacgggcc
     5701 gccgcgccgg cggcgcgcac gcgcgcgcag gacgaggccg agggcaatgg cttcggccag
     5761 gcggtgaagg acgcggtgtt cggcaccagc cgccgccagg gcatggtcga atcgatggcc
     5821 aagcaggccg cgcgcacggt cggcagccag atcggccggc agatcctgcg cggcgtgctc
     5881 ggcggcctgc tcggcggcag cagccggcga taggcctcgc gctggccgag cggtaaggcc
     5941 gccgacgttc ccctctgcgc atgcggggtg gcgtgccggg cgctcgtgcg ggccggctca
     6001 ccggcgtcct ccctcctccg gcatcgctcc gggagtccgt catgcgccat gccaccctgc
     6061 tcgctccctt cctccgggcc gaatccaggc gcgggctgtc caccggcatg cgtgcgtcgc
     6121 tggaattccg ccagatgatc gcaatgcaca ccgacacgtt cgccgcgggg ccgcatacgg
     6181 cgcagcaact ggtcgatgcc gccggaaagt gacggcgccg cttgagtggg gacgcagggt
     6241 ctgcaataac acgcgcccgc gtcctcctct tcccgcatgt cgcgctggcg tccgccccag
     6301 gaaaaaagca ccgcgctcat cacgcccgaa ggccacgcgc ggctgaaggc cgagctcgac
     6361 gcgctgtggc ggacgaaacg tcccgaggtg gtcaaggccc tcgccgccgc ggccgccgaa
     6421 ggcgaccgct ccgagaacgc cgagtacacc taccgcaaga aacagctcgg cgagatcgac
     6481 cggcgcgtgc gctacctcag caagcggctc gagtcgctgc gcgtggtcga cgccgcgccg
     6541 gcggaccgcg acgcggtgtt cttcggggca agcgtcgagg tggaggacat cgcgaacggc
     6601 gaactcgccc gctaccgcat cgtcggcccc gatgaaaccg acgccaggca gggctggatc
     6661 agcatcgact cgccgctcgc gcgcgcgatg ctgaagaagc gcatcgacga cgaattcgag
     6721 gcggtgctcc ccggcggccc ggcccgcttc gtcatcgtcg acgtcggcta ctgaggcctc
     6781 acgccatcca gctcgccagc aggccgaccg tggtggccag catgaccacg gtcgccgccc
     6841 agcccgcgat ccggagcgcc ggcggcaggc ggaagccggc caccacgcgc cggttgccgg
     6901 ccagcagcat gatcatcacc atcgccggcg cggccaccac gccgttgagc accgccgacc
     6961 agaacagcgc gcggatcgga tcgatgccga tgaagtccag cgccaggccg gtcagcatgg
     7021 cccccgccag gaccaggtag aagcccttcg cctcgcgcgg acggctctcc aggctgacgt
     7081 gccactgcat cagttcgccg accgcgtacg ccgccgagcc ggccaggaca ggcacggcca
     7141 gcagcccggt gccgatgatc ccggcactga agatccagaa ggtgaagccg cccgcgatgg
     7201 gtcgcaacgc ctcggccgcc tgcgccgcgc tggcgatccc ggtcacgccg ctggcgtgca
     7261 gggtcgccgc gcaggtgagg atgatgaaga acgacaccag gttggagaac gccatgccga
     7321 ccgcggtatc gaggtcgatc cggcgcaggt gccggcgtgc ctgccagggc gcgcgcttga
     7381 gcggccggtc gtgcgggtcg tcggtggtgt cctccgcttc ctccgatgcc tgccagaaga
     7441 acaggtacgg gctgatggtg gtgccgagca cggcgatcgc cgcggtcagg tactcgggcg
     7501 tgaacgccag tttcggcacc accgcaccga gcagtgcctg ccgccactgc acctcgaccg
     7561 cgaacaccac cgcgacgtag gcgaacaacg cgaaagtcag ccacttcagg aggcgcgcat
     7621 agcggtggta gggcacgaac acctgcagca ccaggctcag cagcgcgaag ccgatcgcat
     7681 gggcgagcgc ggggccgccg gccagcagtt tcagcgcctc gcccatcgcc gagaagtccg
     7741 cgccgatgtt gaagacgttc gcggccacca tcagcgcgac gacgaagcgc gccagccagt
     7801 gcggatagaa gcggcgcagg ttgccggcga tgccatggcc ggtgatgcgg ccgatgcgcg
     7861 cgctgatgtc ctggatggcg gtcatcagcg gccacgagaa cggcatggtc cacaggagcg
     7921 cgtagccgaa ctgcgcgccg acctgcgagt aggtggcgat gccgctggga tcgtcgtcgg
     7981 acgcgccggt gatgaagccc gggccgagct ggcgcagcag cccgcgcgcg ctgacgggct
     8041 cgggcgccgg ctcggcccgc tgccggtggc gacggctcag atgccccccc accagtcgta
     8101 gccgcggtcc tcccagtagc cgccacggcc ggcgccgaac gcggcgtagc cgggcgccag
     8161 ttcgatcgcg cgcacgtact tgggctgctt gtagccgagc ttgcgctcga tccgcatgcg
     8221 aaccggcgcg ccattggcga tcggcaacga cgcgccattg agcatgtgcg cggcgatcgt
     8281 ctgcgggtgg taggcgtcga gcaggtcgac gctttcgtaa tagcgcgatc cgtcgccggc
     8341 caggtcgtcg aagcagtgga acacgaccat gcgcgcgccg ggtttcggtc gcgcgaggtc
     8401 gagcaggtgc gccagtggca cgccggtcca ctggccgatc acgctccagc cctcgacgca
     8461 gtcgtggcgg gtgatctggg tgcggttggg cagtgcgcgc agggcctcca gggagaactc
     8521 cagcggccgc tcgaccaggc cg
//
LOCUS       DATIQC010000501         5831 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_279861, whole genome shotgun sequence.
ACCESSION   DATIQC010000501 DATIQC010000000
VERSION     DATIQC010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5831
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279861"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VLM17_10760"
     CDS             <1..229
                     /locus_tag="VLM17_10760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008572000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HSR66065.1"
                     /translation="SLMSTPIVNPPQSAILGMHAIKERPIAENGQVVIAPMMYIALSY
                     DHRIIDGKDAVLFLVDIKNQLENPHRMLLGL"
     gene            251..1675
                     /gene="lpdA"
                     /locus_tag="VLM17_10765"
     CDS             251..1675
                     /gene="lpdA"
                     /locus_tag="VLM17_10765"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005988423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HSR66066.1"
                     /translation="MSEQFDVVVIGAGPGGYVAAIRAAQLGLKTACVDAFIGKDGKPA
                     LGGTCLNIGCIPSKALLDSSRQFWNMGHIFGDHGISFKDAKIDVGTMVGRKDKIVKQF
                     TGGIAMLFKANKITAFYGFAQLQPGNVVTVKQHDGSTVELKGTNVILAAGSDSIELPF
                     AKFDGKTIVDNVGALDFPEVPKRLGVIGAGVIGLELGSVWKRLGSEVTILEALPDFLA
                     AADTEVAKTAAKEFRKQGLDIRLGAKVSKAEVKKDGVHVTYSDAKGEQTLVVDKLLVS
                     VGRRAATRGLLAEGTGVKLDQRGMIEVDEHCHTGVDGVWAVGDCVRGPMLAHKGFEEG
                     IAVAELIAGLPGHVNLETIPWVIYTEPEIAWVGRTEEQLKADGVPYKAGSFPFAAVGR
                     AVAMAEPIGFVKVLAHAETDTILGMHLVGPNVSELVHEGVLSMEFKGSADDLARICHA
                     HPSLSEAVHDAAMAVHKRSIHKAN"
     gene            1822..2166
                     /locus_tag="VLM17_10770"
     CDS             1822..2166
                     /locus_tag="VLM17_10770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3147 family protein"
                     /protein_id="HSR66067.1"
                     /translation="MNAQFLIKTMVTLAVVLAASFFARRSGWLGALIASLPLTSLLVL
                     GWLYAETRDARQVADLSMGIFWFVLGSLPFFVVLALALRHGWNIGLAFACAALAGFAG
                     VSLTQWLLARAA"
     gene            2187..3047
                     /locus_tag="VLM17_10775"
     CDS             2187..3047
                     /locus_tag="VLM17_10775"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HSR66068.1"
                     /translation="MAQDDNPIRNVSDTALWVAIYRAMETERSDAIFRDPHARRLGGE
                     RGQAIVDGMPRGRTMGWPMVVRTAVMDEIVLRCVRQGAATVLNLAAGLDARPYRMDLP
                     ATLRWMHVDMPEMIDYFRGHMAGETPRCQLEFVAADLRDGAARREVFARAAAHGPVLV
                     ITEGLLVYLEADDVAALARDLHDVARARWWLTDLASPMLLKFLERRWQPKLRAANAPF
                     RFGPAEGTAFFAPSGWREAEFRSTWDESQRLHRTMRGAWLWKLLSRLQSKQRREAGRR
                     MSGIVLLESA"
     gene            3073..3666
                     /locus_tag="VLM17_10780"
     CDS             3073..3666
                     /locus_tag="VLM17_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HSR66069.1"
                     /translation="MRAVCVYCGSNTGAKPAYAERAALLGARLAREGLALVYGGGNVG
                     LMGIVADAALAAGGEVVGVIPEQLVGWEVAHAGLGRLEVVGSMHERKARMFDLSDAFI
                     ALPGGFGTLDEMFEMLTWRQLGLGDKPCAFLDVDGYYAPLAAMLDHMVGERFLHPDQR
                     RDLWHGEDPDALFAWLRAYRPVRAGKSLDEQRRRELR"
     gene            3663..4655
                     /locus_tag="VLM17_10785"
     CDS             3663..4655
                     /locus_tag="VLM17_10785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdH/YhfP family quinone oxidoreductase"
                     /protein_id="HSR66070.1"
                     /translation="MTIPERFRAFRIHDDDAGYRSGIEDVSLDDLSPGEIVVRAAYSS
                     VNFKDALAGTGKGRILRRFPLAGGIDVAGHVVASRDRAFREGDAVLVTGCGLSETRDG
                     GYSEYARLQAEWTIPLPSGLSLREAMILGTAGFTAALALFRLLENRQEPALGPLCVTG
                     ATGGVGMLALDIFSRAGFAVHAVSGKAEHADFLRAIGAADVLGRDALATTRPMESARF
                     GGGLDNVGGPMLASLLAQTAPYGNVASAGLAASADLATTVMPFIIRGVSLLGVASAGT
                     ARAIREELWRRLASDWKPAHLERICTREVGLDGLPEVFATMLAGGSFGRTLVRL"
     gene            4727..5131
                     /locus_tag="VLM17_10790"
     CDS             4727..5131
                     /locus_tag="VLM17_10790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR66071.1"
                     /translation="MARILIVDDSPSQLMGIRRIVEKLGHEALTAEDGAAGVEAAKRE
                     IPDLILMDVVMPNLNGFQATRSITREPTTRHIPVILVTTKDQDTDRVWGMRQGARAYL
                     TKPFSESELAEIITSHVGTGPAPVPEDGGEAA"
     gene            complement(5135..>5831)
                     /locus_tag="VLM17_10795"
     CDS             complement(5135..>5831)
                     /locus_tag="VLM17_10795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HSR66072.1"
                     /translation="RGYRPGEEIHAPPGGFGQGGAEGFDFDEIFAGGGAGGGFSDFFE
                     ELFGRRRASGGFGQRGGAQPRGDTRAKLAVPLEAVYGGDSVRIAVNGKTLDVRVPKGV
                     RPGQVIRLAGQGNRGGDLLLEVEYAAHPQFEVDGRNILYSLPVAPWEAALGATVSVPT
                     LGGPVDVRIPADSEAGRKLRLRGRGLPGGVQGAAGDEIIELEVLAPRAHDDAQREAYR
                     RLEDAFGSDWRRA"
BASE COUNT          855 a         2118 c         2025 g          833 t
ORIGIN      
        1 ctcgctgatg tcgacgccga tcgtcaaccc gccgcagtcg gccatcctgg gcatgcatgc
       61 catcaaggag cgcccgattg ccgagaacgg ccaggttgtg atcgcgccga tgatgtacat
      121 cgcgctgagc tacgaccacc gcattatcga cggcaaggac gcggtgctgt tcctggtgga
      181 catcaagaac cagctggaaa acccgcaccg gatgctgctg ggcctttaat tcaacgcata
      241 aggattggca atgagcgagc agttcgacgt agtggtgatc ggcgccggcc ccggcggtta
      301 cgtggcggcc atccgtgccg cgcagctggg cctgaagacg gcctgcgtgg atgccttcat
      361 cggcaaggac ggcaagcccg cgctcggcgg cacctgcctc aacatcggct gcatcccgtc
      421 caaggcactg ctcgactcgt cgcgccagtt ctggaacatg ggccacatct ttggcgacca
      481 tggcatcagc ttcaaggacg cgaagatcga cgtcggcacc atggtcggcc gcaaggacaa
      541 gatcgtgaag cagttcaccg gcggcatcgc gatgctgttc aaggcgaaca agatcacggc
      601 gttctacggt ttcgcccagc tgcagccggg caacgtcgtc acggtgaagc agcacgacgg
      661 cagcaccgtc gagctcaagg gcaccaacgt catcctcgca gccggctcgg actcgatcga
      721 gctgccgttc gcgaagttcg acggcaagac catcgtcgac aacgtcggcg cgctcgactt
      781 ccccgaagtg cccaagcgcc tcggcgtgat cggcgccggc gtgatcggcc tcgagctcgg
      841 cagcgtgtgg aagcgcctgg gcagcgaggt caccatcctc gaggcgctgc ccgacttcct
      901 cgccgccgcc gacacggaag tggcgaagac cgccgccaag gaattcagga agcagggcct
      961 cgacatccgc ctcggcgcga aggtcagcaa ggccgaagtg aagaaggacg gcgtccacgt
     1021 cacctattcc gacgccaagg gcgagcagac gctcgtcgtc gacaagctgc tggtgtcggt
     1081 cggccgccgc gccgcgacca ggggcctgct ggccgagggc accggcgtca agctcgacca
     1141 gcgcggcatg atcgaggtcg acgagcactg ccacaccggg gtcgacggcg tgtgggccgt
     1201 cggcgactgc gtgcgcgggc ccatgctggc gcacaagggc ttcgaggaag gcatcgccgt
     1261 cgccgaattg atcgccggcc tgccgggcca cgtcaacctc gagacgattc cgtgggtgat
     1321 ctacaccgag ccggagatcg cctgggtcgg ccgcaccgag gagcagctca aggccgacgg
     1381 cgtgccgtac aaggccggca gcttcccctt cgcggcggtc ggtcgcgcgg tggcgatggc
     1441 cgagccgatc ggcttcgtga aggtgctggc gcacgccgaa accgacacca tcctcgggat
     1501 gcacctggtc ggcccgaacg tgtccgagct ggtccacgag ggcgtgctgt cgatggaatt
     1561 caagggcagc gccgacgacc tcgcccgcat ctgccacgcc catccgtcgc tgtccgaggc
     1621 ggtgcacgac gcggcgatgg cggtgcacaa gcgctcgatc cacaaggcga actgagcgcg
     1681 tgcccggcgc agggcacgcc gacgcgacgc aggccggccg ccgatcggtc ggcatcgggc
     1741 accggttgag cgtgcgcagg gcgtgcgcgc cgcgcacccc ggcaacaccc gcctgatccc
     1801 cctcggcccc gaggacacgc gatgaacgcc cagttcctca tcaagacgat ggtcaccctc
     1861 gcggtggtgc tggcggcctc cttcttcgcc cgccgcagcg gctggctcgg cgccctcatc
     1921 gcctcgctgc cgctgacctc gctgctggtg ctgggctggc tgtacgccga gacgcgcgat
     1981 gcgcgccagg tcgccgacct gtcgatgggc atcttctggt tcgtgctcgg cagcctgccc
     2041 ttcttcgtcg tcctggcgct cgcgctgcgg cacggctgga acatcgggct ggcgttcgcc
     2101 tgcgcggcgc tcgcgggctt cgccggggta tcgttgacgc agtggctgct cgcgcgggcg
     2161 gcctgacccg gcgaagggag gcggcgatgg cgcaggacga caacccgatc cgcaacgtgt
     2221 cggacaccgc cctgtgggtg gcgatctacc gcgccatgga gaccgagcgc agcgacgcga
     2281 tcttccgcga cccccatgcg cgccggctcg gcggagagcg cggccaggcc atcgtcgacg
     2341 gcatgccgcg cggccgcacg atgggctggc cgatggtggt tcgcaccgcg gtgatggacg
     2401 agatcgtgct gcgctgcgtc cggcagggcg cggcgacggt gctcaacctc gccgccggcc
     2461 tggatgcgcg cccctatcgc atggacctgc cggccacgct gcgctggatg cacgtcgaca
     2521 tgccggagat gatcgactac ttccgcgggc acatggccgg cgagacgccg cgctgccagc
     2581 tcgaattcgt cgccgccgac ctgcgcgacg gcgcggcgcg gcgcgaggtg ttcgcgcgcg
     2641 ccgcggcgca cggcccggtg ctggtgatca ccgaaggcct gctggtctac ctggaggcgg
     2701 acgacgtcgc cgcgctcgcg cgcgacctgc acgacgtcgc ccgggcgcgc tggtggctca
     2761 ccgacctcgc ctcgccgatg ctgctcaagt tcctcgagcg gcgatggcag ccgaagctgc
     2821 gcgcggccaa cgcgccgttc cgcttcggcc cggccgaagg caccgccttc ttcgcgccgt
     2881 cgggctggcg cgaagcggaa ttccgctcga cgtgggacga atcgcagcgc ctccatcgca
     2941 cgatgcgggg cgcctggctg tggaagctgc tgtcgcgcct gcaatcgaag cagcgccgcg
     3001 aggcaggtcg ccgcatgtcg ggcatcgtgc tgctggagtc ggcctgatgg aacgtcttgc
     3061 agggcgccgt tgatgcgcgc ggtctgcgtc tactgcggct ccaacaccgg cgcgaagccg
     3121 gcgtacgccg aacgcgccgc gctcctgggc gcgcgcctgg cgcgcgaggg cctggcgctg
     3181 gtctacggcg gcggcaacgt cggcctgatg ggcatcgtcg ccgatgccgc gctggccgcg
     3241 ggcggcgagg tggtcggcgt catccccgag cagctggtcg gctgggaagt ggcgcacgcc
     3301 ggcctgggcc ggctggaagt ggtcggcagc atgcacgagc gcaaggcgcg catgttcgac
     3361 ctcagcgacg ccttcatcgc cctgcccggc ggcttcggca cgctcgacga aatgttcgag
     3421 atgctcacct ggcgccagct cggcctcggc gacaagccgt gcgcgttcct agacgtcgac
     3481 ggctactacg cgcctctcgc ggccatgctc gaccacatgg tcggggaacg cttcctgcat
     3541 cccgaccagc gccgcgacct ctggcacggc gaggaccccg acgcgctgtt cgcctggctg
     3601 cgcgcgtacc ggccggtgcg ggcgggaaaa tcgctggacg aacaacgacg cagggagctg
     3661 cgatgaccat ccccgagcgc ttccgcgcct tccgcatcca cgacgacgac gccggttacc
     3721 gcagcggcat cgaggacgtg tcgctggacg acctctcgcc cggcgagatc gtcgtccgcg
     3781 cggcctattc gtcggtgaac ttcaaggacg cgctggccgg caccggcaag ggcaggatcc
     3841 tgcggcgctt cccgctggcg ggcggcatcg acgtcgccgg ccacgtggtc gcctcgcgcg
     3901 atcgcgcctt ccgcgagggc gacgcggtgc tggtcaccgg ctgcggactg tcggaaacgc
     3961 gcgacggcgg ttactccgaa tacgcccgcc tgcaggccga atggacgatc ccgctgccgt
     4021 cggggctgtc gctgcgcgag gccatgatcc tcggcaccgc gggcttcacc gcggcgctgg
     4081 cgctgttccg cctgctcgag aaccggcagg aacccgcgct cggccccctg tgcgtcaccg
     4141 gcgcgaccgg cggcgtcggc atgctcgcgc tcgacatctt cagccgcgca ggcttcgccg
     4201 tgcatgcggt cagcggcaag gcggaacacg cggatttcct gcgcgcgatc ggcgccgcgg
     4261 acgtgctcgg acgcgacgcg ctggcgacca cgcgacccat ggaatcggcg cgcttcggcg
     4321 gcggcctcga caacgtcggc gggccgatgc tggcgagcct gctcgcgcag accgcgccct
     4381 acggcaacgt cgccagcgcg ggcctcgcgg cgagcgcgga cctcgcgacc accgtcatgc
     4441 ccttcatcat ccgcggcgtg tcgctgctcg gcgtcgcctc ggccggcacc gcgcgggcga
     4501 tccgcgagga gctgtggcgg cggctggcgt cggactggaa gcccgcgcac ctggagcgga
     4561 tctgcacccg cgaggtcggc ctcgacgggt tgccggaggt cttcgcgacc atgctcgccg
     4621 gcggctcctt cggccgcacg ctggtgcggc tgtagcactg cgccccgggc ggcttgcggc
     4681 gcgcgtgtcc accgctacaa tcgggccgtc ttcacgggga aaccgcatgg cccgcatcct
     4741 gatcgtcgac gattcgccct cgcagctgat gggcatccgc cgcatcgtcg agaagctcgg
     4801 ccacgaggcg ctcaccgccg aggacggcgc cgccggcgtc gaggcggcca agcgcgagat
     4861 ccccgacctg atcctgatgg acgtggtgat gccgaacctc aacggcttcc aggccacgcg
     4921 ctcgatcacc cgcgaaccga cgaccaggca catcccggtg atcctggtga cgaccaagga
     4981 ccaggacaca gaccgcgtgt ggggcatgcg ccagggcgcg cgcgcctacc tcaccaagcc
     5041 cttcagcgaa tccgagctgg ccgagatcat caccagccat gtcggcaccg gcccggcccc
     5101 ggtcccggag gatggcggcg aggccgcctg agcctcaggc ccggcgccag tcgctgccga
     5161 acgcgtcctc cagcctgcga taggcctcgc gctgcgcatc gtcgtgcgcg cgcggcgcca
     5221 gcacttccag ttcgatgatc tcgtcgccgg cggcaccctg cacgccgccc ggcaggccgc
     5281 ggccgcgcaa ccgcagcttg cggccggctt ccgaatcggc cgggatgcgc acgtcgaccg
     5341 gcccgcccag cgtcggaacg ctcaccgtcg cgcccagcgc cgcttcccag ggcgccaccg
     5401 gcaggctgta gaggatgttg cggccgtcga cctcgaactg cggatgcgcc gcgtactcga
     5461 cttccagcag caggtcgccg ccgcggttgc cctgccccgc cagccggatc acctgccccg
     5521 gccgcacgcc cttgggcacg cgcacgtcga gcgtcttgcc gttgacggcg atgcgcacgc
     5581 tgtcgccccc gtacaccgct tccaacggca ccgcgagctt ggcgcgggtg tcgccgcgcg
     5641 gctgcgcgcc cccgcgctgg ccgaagccgc cgctcgcgcg acgacgcccg aacagctcct
     5701 cgaagaaatc cgagaagccc ccgccggcgc cgccgccggc gaagatctcg tcgaagtcga
     5761 aaccctccgc gccgccctgg ccgaagccgc ccggcggcgc atggatctcc tcgcccggcc
     5821 ggtagccgcg c
//
LOCUS       DATIQC010000502         4712 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_455912, whole genome shotgun sequence.
ACCESSION   DATIQC010000502 DATIQC010000000
VERSION     DATIQC010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_455912"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1197)
                     /locus_tag="VLM17_10800"
     CDS             complement(<1..1197)
                     /locus_tag="VLM17_10800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011051804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HSR66073.1"
                     /translation="MHKKADVLIVGGGVVGLACGLALQEAGRQVRVVDAGAAGQGSSH
                     GNCGTLTPSHALPLAVPGTIGRALRWMLTPDAPLYLAPRADPLLWRWMLRFAGNCNER
                     AALVAARARVALLQASRDAFPAWLASHAIEAEFEQLGVDHVFRDPGALGAFLPECEAL
                     ADLGIAHERIAGDAYLRGEPALREGVAGVVRFPGDASLRPDRYVAGLARALAAAGGEI
                     FEHCAVHGVQAAGDGMQALTDRGVQHARDVIVATGAWTPRLALSPALASLRAAMQPGK
                     GYSITYDRPALAPRRPLVLHERSVCVTTWGSGYRLGSTMEFSGYDTTLNRRRLDALER
                     GAREYLREPVGAVVREEWYGWRPMSCDDVPILGAVPGERHLWVATGHGMLGVSMIPAT
                     ALLLCDL"
     gene            1473..3068
                     /locus_tag="VLM17_10805"
     CDS             1473..3068
                     /locus_tag="VLM17_10805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007967835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M4 family metallopeptidase"
                     /protein_id="HSR66074.1"
                     /translation="MHFQARLLSVAVVAALALPASALAAVPAGSPAVSRALGLIDGHG
                     KSFQRADADRFVAKDVIVDRDGTEHVRFARTYRGLPVIGGDVVVHSRNGQLRSESMTL
                     KTAGRPDIVPTISASQAIVEAGARFGTGFQGTPTSSLVIYARGATPVLAHEVVFNGVK
                     ADQTPTDMHYIVDARNGHVLDKWDTINTAAATGTGRTLYSGNVSINTNTISGGYEMRD
                     TVRGGTYTMDCGGCATNSPPKAGTPLTDADNTWGNNATSDRATAGADAHYGVASTWDF
                     YQSLGRNGIANDGKGAFNRVHVGRNYVNAFWSDGCFCMSYGDGDGVTYSPLVDLDVAG
                     HEMSHGVTSRSAGLTYSGESGGLNEATSDIMGTMVEFFANNANDTPDYLIGEKIYINN
                     TTGKALRYMFRPNKDGSSSDCWYSGVGSLDVHYSSGPANHFYYLLAEGTGTKTFSGVA
                     HTPSVCKAGDTKAGTGTGTLTGIGRDAATKIWYRALTVYMTSNTNYAGARTATLNAAA
                     DLYGNGSANYNAVAAAWSAINVN"
     gene            complement(3175..3654)
                     /locus_tag="VLM17_10810"
     CDS             complement(3175..3654)
                     /locus_tag="VLM17_10810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HSR66075.1"
                     /translation="MKIEKDRVVRFHYSVAEQGQESVENSRGGEPLAILYGHGNIIPG
                     LEKAMEGREAGESFSADVPAAEAYGEKRDGLSQRIPKKHFGDQRLAPGMQVVLNTNFG
                     PRAVTIEKVGMSVVDVDLNHPMAGKDLHFDIDVVEVREATAEELEHGHVHGEGGHHH"
     gene            3836..4294
                     /locus_tag="VLM17_10815"
     CDS             3836..4294
                     /locus_tag="VLM17_10815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HSR66076.1"
                     /translation="MSACGHTPVRRTPVAERRWPLVVPSDPVKANAVLMRALSLVGTP
                     YRYGGNTPESGFDCSGLVGYVFRDMLDLRLPRTTRELAGWEGPRIPPERLATADLVFF
                     GAAGQVSHVGIYVGEGRFVHAPSSGGTVRLDRLDGPYWRDHYTGARRVLR"
     gene            4426..>4712
                     /locus_tag="VLM17_10820"
     CDS             4426..>4712
                     /locus_tag="VLM17_10820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66077.1"
                     /translation="MTTTDQPLGRTAANRRPVRGFLRFLCCAVLGAAALPAFAQQAPA
                     APMTASTAAPVALPAPPAIDASLPLSDRAILLAGDLRRMVGAQSAIADAPKP"
BASE COUNT          677 a         1819 c         1556 g          660 t
ORIGIN      
        1 caggtcgcac agcagcagcg cggtggcggg aatcatgctg acgcccagca tgccatgccc
       61 ggtggcgacc cacaggtgcc gttcgccggg gaccgcgccg aggatcggca cgtcgtcgca
      121 gctcatcggc cgccacccat accattcctc gcgcaccacc gcgccgaccg gctcgcgcag
      181 gtattcgcgc gcgccgcgct cgagcgcatc gaggcgacgg cggttgagcg tcgtgtcgta
      241 gccggaaaac tccatcgtgc tgccgagccg gtagccgctg ccccaggtgg tgacgcacac
      301 gctgcgctcg tgcagcacca gtggccggcg cggcgccagc gccgggcggt cgtaggtgat
      361 cgaatagccc ttgcccggct gcatcgccgc gcgcagcgac gccagcgccg gcgacagggc
      421 caggcgcggc gtccacgcgc cggtggcgac gatgacgtcg cgcgcatgct gcacgccgcg
      481 gtcggtcagc gcctgcatgc cgtccccggc cgcctgcacg ccgtgcaccg cgcagtgctc
      541 gaagatctcg ccgccggcag cggccagcgc gcgcgccagg cccgcgacgt agcggtccgg
      601 gcgcaggctg gcgtcgcccg ggaaacgaac cacgccggcg acgccctcgc gcagcgcggg
      661 ctccccgcgc aggtaggcat cgccggcgat gcgctcgtgg gcgatgccga ggtccgccag
      721 cgcctcgcat tccggcagga aggcaccgag cgcgccgggg tcgcggaaca cgtggtcgac
      781 gccgagctgc tcgaattcgg cctcgatcgc gtggctcgcg agccaggcgg gaaacgcgtc
      841 gcgcgaggcc tgcagcagcg ccacgcgcgc gcgcgccgcg accagcgcgg cgcgttcgtt
      901 gcagttgccg gcgaagcgca gcatccatcg ccagagcagc gggtcggcgc gcggcgcgag
      961 gtacagcggc gcgtccgggg tcagcatcca gcgcaacgcg cgcccgatcg tgcccggcac
     1021 cgccagcggc agcgcgtggc tgggcgtcag cgtgccgcag ttgccatgcg aactgccctg
     1081 cccggcggcg ccggcatcga ccacgcgcac ctgccgcccg gcttcctgca gcgccaggcc
     1141 gcaggccagc ccgaccaccc cgccgccgac gatcagcaca tccgctttct tgtgcactgc
     1201 ctcatatccg aaagttgtca caaggccggc agccgcttcg gccgggtccc ggcgttctgc
     1261 atgaacgagt cacgcttcta ctgcgacgca gcatgacagc agccgtgacg catgcctatt
     1321 ttcggtgcgc ctaccgcccg caccgggctg cccccgcggc tgccggactg gccatcaggt
     1381 cacttcggcc agccgcgcga gcggggcgtc ggagtgtatg tccaacgccg gctccgccgg
     1441 tccctccgac aaaacactca ggggtgtttt cgatgcattt ccaggctcgc cttctcagcg
     1501 tggcggtggt cgccgcgctt gcccttcccg cttccgccct cgccgctgtc ccggccggtt
     1561 cgcccgcggt gtcccgcgcg ctgggcctga tcgacggcca cggcaagtcg ttccagcgcg
     1621 ccgacgcgga ccgcttcgtc gccaaggacg tgatcgtcga tcgcgacggc accgagcacg
     1681 tgcgcttcgc ccgcacctac cgcggcctgc cggtgatcgg cggcgacgtg gtcgtgcact
     1741 cgcgcaacgg ccagctccgc tccgagagca tgaccctcaa gaccgcgggc cgcccggaca
     1801 tcgtcccgac gatcagcgcc agccaggcca tcgtcgaggc cggcgcccgc ttcggcaccg
     1861 gcttccaggg cacgccgacc tccagcctgg tgatctacgc gcgcggcgcc accccggtgc
     1921 tcgcgcacga ggtcgtgttc aacggcgtca aggccgacca gaccccgacc gacatgcact
     1981 acatcgtcga tgcgcgcaac ggccacgtcc tcgacaagtg ggacacgatc aacaccgccg
     2041 ccgcgaccgg caccggccgc acgctgtact cgggcaacgt gtcgatcaac accaacacca
     2101 tctccggcgg ctacgagatg cgtgacaccg tccgcggcgg cacgtacacc atggactgcg
     2161 gcggctgcgc caccaattcg ccgcccaagg ccggaacccc gctcaccgac gccgacaaca
     2221 cctggggcaa caacgccacc tccgaccgcg ccaccgccgg cgccgacgcg cattacggcg
     2281 tcgcgtcgac ctgggacttc taccagtcgc tcggccgcaa cggcatcgcc aacgacggca
     2341 agggcgcctt caaccgcgtc cacgtcggcc gcaactacgt caacgcgttc tggtccgacg
     2401 gctgcttctg catgagctac ggcgacggcg acggcgtgac ctacagcccg ctcgtcgacc
     2461 tcgacgtcgc cggccacgag atgagccacg gcgtgacctc gcgctcggcc ggcctcacct
     2521 actccggcga gtcgggcggc ctcaacgaag ccacctccga catcatgggc acgatggtcg
     2581 agttcttcgc caacaacgcg aacgacacgc cggactacct gatcggcgag aagatctaca
     2641 tcaacaacac cacgggcaag gcgctgcgct acatgttccg cccgaacaag gacgggtcgt
     2701 cgtccgactg ctggtactcg ggcgtgggct cgctggacgt gcattacagc tcgggcccgg
     2761 cgaaccactt ctactacctg ctggccgagg gcaccggcac caagaccttc agcggcgtgg
     2821 cgcatacgcc gtcggtctgc aaggcgggcg acaccaaggc cggcaccggc acgggcacgc
     2881 tgaccggcat cggccgcgac gcggccacca agatctggta ccgcgccctc accgtgtaca
     2941 tgacgtccaa caccaactac gcgggcgccc gcacggccac gctgaacgcc gccgcggacc
     3001 tgtacggcaa cggctcggcg aactacaacg ccgtcgccgc ggcctggtcg gcgatcaacg
     3061 tcaactgatc catcgcgtca ccgcaaacga gaacggcccg cgcgagcggg ccgttttctt
     3121 ttgcaggccg gaaccggcgc cggcaccttc gatcgtcgga ggcgcgggcc cgtttcagtg
     3181 gtggtggccg ccctcgccgt gcacgtggcc gtgttccagt tcctcggccg tcgcctcgcg
     3241 cacctcgacc acgtcgatgt cgaagtggag gtccttgccg gccatcgggt ggttgaggtc
     3301 gacgtcgacc acgctcatgc cgaccttctc gatggtcacc gcgcgcgggc cgaagttggt
     3361 gttgagcacg acctgcatgc cgggggcgag gcgctggtcg ccgaagtgct tcttcgggat
     3421 gcgctggctc aggccgtcgc gcttctcgcc gtaggcctcg gcggccggca cgtcggcgct
     3481 gaacgactcg cccgcctcgc ggccttccat cgccttctcc aggcccggga tgatgttgcc
     3541 gtggccgtac aggatggcca gcggctcgcc gccccgggaa ttctcgacgg attcctggcc
     3601 ctgctcggcc acgctgtaat ggaagcggac gacgcggtct ttctcgatct tcatggggcc
     3661 tcggagccgg ccgcgccggc ggtgagcggc gcttgtgcac gccgggtgaa agcggccaca
     3721 ctggcgcgcg atgaagcacg ccagcatccg ggctgcggga gccgcgcatt atccggactc
     3781 gttccggccc gcgccagccg cggtggtcgt ggccgtgctc gccggcgcgc tgctcatgtc
     3841 cgcctgcggc cacacgccgg tgcgccgtac gccggtggcg gaacgcaggt ggccgctggt
     3901 ggtccccagc gatccggtga aggccaacgc ggtgctgatg cgcgcgctca gcctggtcgg
     3961 cacgccctac cgctacgggg gcaacacgcc cgaaagcggc ttcgactgca gcggcctggt
     4021 cggttacgtc ttccgcgaca tgctcgacct gcggctgccg cgcaccaccc gcgaactcgc
     4081 cggctgggag ggcccacgca ttccgcccga gcggctggcc accgcggatc tcgtgttctt
     4141 cggggccgcg gggcaggtct cgcatgtcgg catctacgtc ggcgaagggc gcttcgtgca
     4201 cgcgccgagc agcggcggca cggtgcgcct ggaccggctc gacgggccct actggcgcga
     4261 ccactacacc ggcgcccggc gcgtcctccg ctgatcgtcc ggggcgcccc cggcaccccg
     4321 aaacgtgacg cccgtcgccc ggcttcacct cgtctttacg gaaattgaac ccgctggccg
     4381 gctccgtggg gcaccatcgc tcctcgcttc aaccgtgagc cccgcgtgac gacgaccgac
     4441 cagccccttg gccgcaccgc cgccaaccgc cgccctgttc gcggattcct ccgcttcctg
     4501 tgctgcgccg tgctgggcgc ggccgccctg cccgcgttcg cgcagcaggc gcccgccgcc
     4561 ccgatgaccg catccacggc ggcgccggtg gccctgcccg cccctcccgc catcgacgcc
     4621 agcctgcccc tgtccgaccg cgcgatcctc ctcgccggcg acctgcgccg catggtcggc
     4681 gcgcagtccg ccatcgccga cgcccccaag cc
//
LOCUS       DATIQC010000503         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_173154, whole genome shotgun sequence.
ACCESSION   DATIQC010000503 DATIQC010000000
VERSION     DATIQC010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173154"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..667
                     /locus_tag="VLM17_10825"
     CDS             11..667
                     /locus_tag="VLM17_10825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010341535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66078.1"
                     /translation="MRHARQHAQQHAQTRTRERRHRLAHEAARLMAEGGIRDYHQAKL
                     KAAARLGILDDASLPRNREIEDALREYQRLFNAGQAGDLHARREAALQALEFFAPFEP
                     RLVGPVLDGTADRNSPVALHLHADDAEAVARFLEERRIPAESRVRRLRVDRERNEDAP
                     VWLFAADGLGFDLTVLPLARLRQAPLSSVDEKPMRRASLSQVRALLAQDEIAGYEAGG
                     "
     gene            complement(735..2039)
                     /locus_tag="VLM17_10830"
     CDS             complement(735..2039)
                     /locus_tag="VLM17_10830"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017156870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HSR66079.1"
                     /translation="MSVENKPAFDQVTLDAAGKQVALPVQVPTLGNPCIDIAKLPKET
                     GCFTYDPGFGATASCKSAITYIDGDQGVLLYRGYPIEQLAEKSNFLEVAYLLMHGELP
                     SQDQFGKFEHEVTHHTMMHEAFRTFLYGFRHDAHPMAMLTGMLGSLASFYHNDLDIDD
                     PEQRRLAAIRLIAKVPTIAAACYRYSIGWPIRYPRNNLEYTTRFLHMMKEVPSEPLEL
                     NPVAAKALDLLFILHADHEQNASTSTVRLVGSTGANPYVSVAAGVAALWGPAHGGANE
                     AVLKMLAEIGRPENVGSAVAKAKDKESGFRLMGFGHRVYKNFDPRAKIIRAMCYQVLQ
                     ELGVNDPLLEVAMRLEEAALKDEYFIQRKLYPNVDFYSGIIYKALGIPTEMFTVMFAI
                     ARTAGWVSHWLEQQNDPEARIGRPRQIYTGYAARDYAGMAKR"
     gene            complement(2241..>2328)
                     /gene="rpmE"
                     /locus_tag="VLM17_10835"
     CDS             complement(2241..>2328)
                     /gene="rpmE"
                     /locus_tag="VLM17_10835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004087863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HSR66080.1"
                     /translation="ASHPFYTGQNKIVDTSGRVDKFRKRYAK"
BASE COUNT          353 a          782 c          824 g          369 t
ORIGIN      
        1 tggaggtcgc atgcgccacg cccgccagca cgcgcagcag catgcgcaga cccgcacccg
       61 cgagcgccgc caccggctcg cccacgaagc cgcgcggctg atggccgaag gcggcatccg
      121 cgactaccac caggccaagc tcaaggcggc cgcgcggctg ggcatcctcg acgacgcctc
      181 gcttccccgg aaccgcgaga tcgaggacgc gctgcgcgaa taccagcgcc tgttcaatgc
      241 cggccaggcc ggcgacctgc acgcgcggcg cgaggcggcg ctgcaggcgc tggaattctt
      301 cgcgccgttc gaaccgcgcc tggtcggacc ggtgctggac ggcaccgccg accgcaactc
      361 gccggtcgcg ctgcacctgc acgccgacga cgccgaagcg gtcgcccgct tcctcgagga
      421 acgccgcatc cccgccgaat cgcgggtgcg ccggctgcgc gtcgaccgcg aacgcaacga
      481 ggacgccccg gtctggctgt tcgccgccga cggcctgggc ttcgacctga ccgtgctgcc
      541 gctggcccgc ctgcgccagg caccgctgtc gagcgtcgac gagaagccga tgaggcgcgc
      601 cagcctctcg caggtgcgcg cgctgctggc gcaggacgag atcgccggct acgaagcagg
      661 cggctgacgc gcgccggttc cgcaaaacag gacgccccgc cggagcgggg cgttttcgcg
      721 acgacgcctg gacttcagcg cttggccatg ccggcgtagt cgcgcgcggc gtagccggtg
      781 tagatctggc gcgggcggcc gatgcgcgct tccgggtcgt tctgctgctc cagccagtgc
      841 gagacccagc cggcggtgcg cgcgatcgcg aacatcaccg tgaacatctc ggtcgggatg
      901 ccgagcgcct tgtagatgat gccggagtag aaatcgacgt tcgggtagag cttgcgctgg
      961 atgaagtact cgtccttgag cgccgcttcc tccaggcgca tcgccacttc cagcagcggg
     1021 tcgttgaccc cgagctcctg caggacctgg tagcacatag cgcggatgat cttcgcgcgc
     1081 gggtcgaagt tcttgtagac gcggtggccg aagcccatca ggcggaagcc cgattccttg
     1141 tccttcgcct tcgcgaccgc ggaaccgacg ttctccggcc tgccgatctc ggcgagcatc
     1201 ttcagcaccg cctcgttggc gccgccatgc gccgggcccc acagcgcggc gacgccggcg
     1261 gcgacgctca cgtacgggtt ggcgccggtc gagccgacca ggcgcacggt cgaggtcgag
     1321 gcgttctgct cgtggtcggc gtgcaggatg aacagcaggt cgagcgcctt cgcggcgacc
     1381 gggttgagtt ccagcggctc cgacggcact tccttcatca tgtgcaggaa gcgcgtggtg
     1441 tactcgaggt tgttgcgcgg atagcggatc ggccagccga tcgaatagcg gtagcacgcg
     1501 gcggcgatcg tcggcacctt ggcgatcagg cggatcgcgg ccaggcggcg ctgctccgga
     1561 tcgtcgatgt cgaggtcgtt gtggtagaag ctcgccagcg acccgagcat gccggtgagc
     1621 atcgccatcg ggtgcgcgtc gtggcggaag ccgtagagga aggtgcggaa ggcctcgtgc
     1681 atcatcgtgt gatgcgtgac ctcgtgctcg aacttgccga actggtcctg cgacggcagt
     1741 tcgccgtgca tcagcaggta ggcgacctcg aggaagttcg acttctcggc gagctgttcg
     1801 atcgggtagc cgcgatacag cagcacgccc tggtcgccgt cgatgtaggt gatcgccgac
     1861 ttgcagctgg cggtggcgcc gaagcccggg tcgtaggtga agcaaccggt ttccttcggc
     1921 agcttcgcga tgtcgatgca ggggttgccg agggtcggca cctgcaccgg cagggcgacc
     1981 tgcttgccgg cggcatccaa cgtcacctgg tcgaaggcgg gcttgttctc gacggacacg
     2041 gcatgctccc tggagacgcg cgcccgtcgg ctgctccgcg ggcacggtgg tgatgatcga
     2101 tccgcggcgg cccgcggaag cagggaatta tcgcataccg gccatgccac atccgccggc
     2161 gtatgccggc gcgcaggccc tggtcgcaaa agcagaacgg ccgccctggg gcggccgttc
     2221 aagcacgcga tgcgtggcgc ttacttggcg tagcgcttgc ggaacttgtc gacgcgaccg
     2281 ctggtgtcga cgatcttgtt ctggcccgtg tagaacggat gcgaggcc
//
LOCUS       DATIQC010000504         3367 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_244133, whole genome shotgun sequence.
ACCESSION   DATIQC010000504 DATIQC010000000
VERSION     DATIQC010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244133"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1032)
                     /locus_tag="VLM17_10840"
     CDS             complement(<1..1032)
                     /locus_tag="VLM17_10840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010378222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HSR66081.1"
                     /translation="MSTYHAPLRDMRFVLFDVLGAEPLFQRLGHADATRDIVDAVLEE
                     AARFTESVLAPLNAAGDRFGCRLNVDTGEVTTPPGFREAYAQFVEGGWSGLTSPPEFG
                     GQGLPHLAGVPLKEMIDAANLAWGNFPLLSHGATEALLHHGEAWQREAFLKPLVEGRW
                     TGTMCLTEPHCGTDLGLLKTRAEPQSDGSHAISGTKIFITAGEHDFTDNIVHLVLARL
                     PEAPAGVKGISLFVVPKMRVGHDGAMGGRNALRCGSLEHKMGIHGSATCVMNFDGAQG
                     WLVGEANKGLAAMFTMMNTARLAVGLQGLGLADRAYQNALRYARERLQMRSLSGAKLP
                     DKPADPIIVH"
     gene            1215..2633
                     /locus_tag="VLM17_10845"
     CDS             1215..2633
                     /locus_tag="VLM17_10845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017118147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HSR66082.1"
                     /translation="MQNWLRRKDIDRVTVHEEGRRLVPTLSWPHLVALGIGAIVGTGI
                     YTLIGVGANLAGPAVLVSFLVAGVVCACAALAYAEMATMMPAAGSAYTYSYTVLGETI
                     AWVVGWSLILEYTLVVSTVAVGWSGYAVGFLQGLGVDLPAALTVGPHAGGLVNLPAIA
                     ITWVVAGLLIAGTRESATLNAFLVVAKLIALAVFVAIALPAFDAANLHPFMPHGFAES
                     IGADGRKYGVMAAAAIIFFAFYGFDAISTAAEETKNPGRDLSIGIVGSMVGCTLIYML
                     VALAAVGALSFTVFGQSPEPLALIMRELGHGTAAKVVAAAAVVALPTVLLAFFYGQSR
                     IFFVMSRDGLLPRSLSKVGRRGTPVAITVFTAVVTSALAGIARLDEIAALANAGTLIA
                     FVAVAACMLVLRRRDPLRPRVFRAPLAWLVGPVAILGCAYLFMSLPTRTQLWCLAWNA
                     FGLVVYLVYARRNSLLAQGQHA"
     gene            2664..>3367
                     /gene="miaA"
                     /locus_tag="VLM17_10850"
     CDS             2664..>3367
                     /gene="miaA"
                     /locus_tag="VLM17_10850"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010484247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HSR66083.1"
                     /translation="MGVDVRPRAIALMGPTASGKSALALEWAERLGGEIVSVDSALVY
                     RGLDIGAAKPTRAERARAPHHLVDVRDPWQPYSAADFARDARTAIDGIVARGRMPILA
                     GGTGLYFRALFDGLAPMPEADPALRARLAAEAQARGWPALHAELAQVDPDAAARIHAT
                     DPQRIQRALEVYRASGRPISAWQRERAGERLPLRVLRLVLAPAGRAVLHARIAARFDT
                     MLGEGFLDEVRALRALP"
BASE COUNT          424 a         1175 c         1244 g          524 t
ORIGIN      
        1 gtggacgatg atcggatcgg cgggtttgtc gggcagcttc gcgcctgaga gcgaccgcat
       61 ctgcaggcgc tcgcgcgcat agcgcagcgc gttctggtac gcgcggtcgg cgaggccgag
      121 gccctgcagg ccgaccgcga gccgtgcggt gttcatcatg gtgaacatcg ccgcaagccc
      181 cttgttggct tcccccacca gccagccctg cgcgccgtcg aagttcatca cgcaggtcgc
      241 cgaaccatgg atgcccatct tgtgttcgag cgatccgcag cgcagcgcgt tgcgtccgcc
      301 catcgcgccg tcgtggccga cccgcatctt gggcaccacg aacagcgaaa tccccttcac
      361 tcccgccggc gcttccggca gtcgcgcgag caccaggtgc acgatgttgt cggtgaagtc
      421 gtgctcgccg gcggtgatga agatcttggt gccgctgatc gcgtggctgc cgtcggactg
      481 cggttcggcg cgcgtcttca gcaggccgag gtcggtgccg cagtgcggtt cggtcaggca
      541 catggtgccg gtccagcgac cttccaccag cggcttgagg aaggcttcgc gctgccaggc
      601 ctcgccgtgg tgcagcagcg cctcggtggc cccgtgggag agcagcggga agttgcccca
      661 ggcgaggttg gcggcgtcga tcatctcctt cagcggcacg ccggcgaggt gcggcaggcc
      721 ctggccgccg aactcgggcg gcgatgtcag gccgctccag ccgccctcga cgaactgcgc
      781 gtaggcctcg cggaagccgg gcggcgtggt gacttcgccg gtgtcgacgt tgagccggca
      841 gccgaagcgg tcgccggccg cgttgagcgg ggcgagcacg ctttcggtga agcgcgcggc
      901 ttcctccagc accgcgtcga cgatgtcgcg ggtggcgtcc gcatgcccga ggcgctggaa
      961 cagcggttcc gcgccgagca cgtcgaacag cacgaagcgc atgtcgcgca ggggggcgtg
     1021 gtaggtgctc atggcgggcg tccggcgttc cagtcggtgg cgtatggtgg ccaccatagc
     1081 ccaagcggca gggggcgtgg agcgcccggg gccggttaag cttgcgcggc ttccggggat
     1141 gcgccggcgc gtggaagcac gtgggtcgcg acgcgaccgc gccgccgccg gcctcctccg
     1201 aaccgaggct cacgatgcag aactggctgc gccgcaagga catcgaccgc gtcaccgtgc
     1261 acgaggaagg ccggcgcctg gtgccgacgc tgagctggcc gcacctggtc gcgctgggca
     1321 tcggcgcgat cgtcggcacc ggcatctaca cgctgatcgg cgtcggcgcc aacctcgccg
     1381 ggccggcggt gctggtgtcg ttcctggtcg ccggcgtggt ctgcgcctgc gcggcgctgg
     1441 cgtacgcgga aatggcgacg atgatgccgg ccgccggcag cgcctacacc tacagctaca
     1501 cggtgctcgg cgagaccatc gcctgggtgg tcggctggag cctgatcctc gagtacacgc
     1561 tggtggtgag cacggtcgcg gtcggctggt ccggctatgc ggtgggcttc ctccagggcc
     1621 tgggcgtcga cctgccggcg gcgttgacgg tcgggccgca cgcgggcggc ctggtcaacc
     1681 tgccggccat cgccatcacc tgggtggtcg caggcctgct catcgccggc acccgcgaga
     1741 gcgccacgct caacgccttc ctcgtcgtcg ccaagctcat cgcgctggcc gtgttcgtcg
     1801 ccatcgcgct gccggccttc gacgcggcca acctgcatcc gttcatgccg cacgggttcg
     1861 ccgaaagcat cggcgcggac ggcaggaaat acggcgtgat ggcggcggcg gcgatcatct
     1921 tcttcgcgtt ctacggattc gacgcgatct cgacggcggc cgaggaaacc aagaatcccg
     1981 gccgcgacct gtcgatcggc atcgtcggct cgatggtcgg ctgcacgctg atctacatgc
     2041 tggtggcgct ggccgcggtc ggcgcgctga gcttcaccgt gttcggacag agcccggaac
     2101 cgctggcgtt gatcatgcgc gagctcggcc acggcaccgc cgcgaaggtc gtcgcggcgg
     2161 ccgcggtggt cgcgctgccg accgtgctgc tggcgttctt ctacggccag agccggatct
     2221 tcttcgtgat gtcgcgcgac ggcctgctgc cgcgcagcct gtcgaaggtg ggcaggcgcg
     2281 gcacgccggt ggcgatcacc gtgttcaccg cggtcgtgac ctcggcgctg gccggcatcg
     2341 cgcgcctgga cgagatcgcc gcgctggcga atgcaggcac cctgatcgcc ttcgtcgcgg
     2401 tcgccgcgtg catgctggtg ctgcgcaggc gcgatccgct gcgcccgcgc gtgttccgtg
     2461 cgccgctggc atggctggtc ggcccggtcg cgatcctcgg ctgcgcctac ctgttcatga
     2521 gcctgccgac gcggacgcag ctgtggtgcc tggcgtggaa cgcgttcggc ctcgtcgtct
     2581 acctcgtcta cgcgcggcgc aacagcctgc tcgcgcaggg gcaacacgcg tgaatccgac
     2641 gcgcgcggcg acgcgatgac gtgatgggcg tcgacgtccg cccgcgcgcg atcgcgctga
     2701 tgggcccgac cgcgtcgggc aagagcgcac tggcgctgga atgggcggag cggctgggcg
     2761 gggagatcgt cagcgtcgat tcggcgctgg tctaccgcgg gctcgacatc ggcgcggcca
     2821 agccgacgcg cgcggagcgc gcgcgcgcgc cgcaccatct cgtcgacgtg cgcgacccct
     2881 ggcagccata ttcggcggcc gatttcgcca gggacgcgcg caccgcgatc gacggtatcg
     2941 tcgcgcgcgg ccgcatgccc atcctggcgg gcggcaccgg gctgtatttc cgcgcgctgt
     3001 tcgacggact ggcgccgatg cccgaggcgg accccgcgct ccgcgcgcgg ctcgcggccg
     3061 aagcgcaggc gcgcggctgg ccggcgctgc acgcggaact ggcgcaggtc gatccggacg
     3121 ccgccgcgcg catccatgcg accgatccgc aacgcatcca gcgcgcgctg gaggtctacc
     3181 gcgccagcgg ccggccgatc agcgcgtggc agcgcgagcg cgccggcgag cggttgccgc
     3241 tgcgcgtgct caggctggtg ctcgcacccg ccggccgcgc ggtgctgcac gcgcgcatcg
     3301 ccgcgcgctt cgacacgatg ctgggcgaag gtttcctcga cgaggtgcgc gccctgcgcg
     3361 cgctgcc
//
LOCUS       DATIQC010000505         1874 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_703808, whole genome shotgun sequence.
ACCESSION   DATIQC010000505 DATIQC010000000
VERSION     DATIQC010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1874)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1874)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_703808"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..496
                     /locus_tag="VLM17_10855"
     CDS             <1..496
                     /locus_tag="VLM17_10855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HSR66084.1"
                     /translation="GQAAEAARTWQPLLAEVDAKTAVPLREQIDAARAAAGLPRLPAA
                     PGPANAPSLTVQVRLDARLAARLGPDATVFVIARMPHGPPMPVAVERHAASELPFTAT
                     LDDADSPMPTAKLSSQAQVEVIARVSQAGNAMPQAGDLESAPVRVALPASKPAALAID
                     HVRE"
     gene            600..1712
                     /locus_tag="VLM17_10860"
     CDS             600..1712
                     /locus_tag="VLM17_10860"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017917743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HSR66085.1"
                     /translation="MTEFIPPGTRFLALPSPFPMKRGGALHGARIAYETWGTLDPARA
                     NAILILTGLSPDAHAAANAANPEPGWWEGMLGPGKAIDTDRWFVVCVNSLGSCKGSTG
                     PASTDPATGEPYRLDFPELSIEDGAEAAFEVVRALGIGRLACVIGNSMGGMVALAFLL
                     RHPGIARSHVNISGSAQALPFSIAIRSLQREAIRLDPNWNDGRYDDAHYPDAGMRMAR
                     KLGVITYRSALEWDGRFGRVRLESDRRDEEAFGLEFEVESYLEAHARRFVRRFDPNCY
                     LYLSRSMDWFDMAEHGGGDVMRGLARIQVERALAIGVHTDILFPLQQQEQIADGLRAG
                     GATAEFLPLPSPQGHDAFLVDIERFGAAVGGFLAGL"
BASE COUNT          246 a          705 c          656 g          267 t
ORIGIN      
        1 cggccaggcg gcggaggcgg cgcggacctg gcagccgctg ctggccgaag tcgatgcgaa
       61 gaccgccgtg ccgctgcgcg agcagatcga cgccgcgcgc gcggccgccg gcctgccgcg
      121 gttgccggcc gcacccggac cggcgaacgc gccatcgctc acggtgcagg tgcgactgga
      181 tgccaggctc gccgcgcgcc tcggtcccga tgccaccgtg ttcgtgatcg cgcgcatgcc
      241 gcacggcccc ccgatgccgg tcgcggtgga gcgccacgcc gccagcgaac tgcccttcac
      301 cgccacgctc gacgacgccg acagcccgat gccgaccgcg aagctgtcgt cgcaggcgca
      361 ggtcgaggtc atcgcgcgcg tgtcgcaggc gggcaacgcg atgccgcagg cgggcgacct
      421 cgaatcggcg ccggtgcggg tggcgctgcc ggcgtcgaaa ccggccgcgc tcgccatcga
      481 ccacgtgcgg gaataggcct gcgcggcctc gcgatcgccg cgcggccgga ccggtgcgcg
      541 gttttgcgac aatggccgga tcggcgcttg cgcccgcacg ctggatccac ggccttcgca
      601 tgaccgagtt catcccgccc ggcacccgtt tcctcgccct gccctcgccc ttcccgatga
      661 aacgcggcgg cgcgctgcac ggcgcgcgca tcgcgtacga gacctggggc acgctcgacc
      721 ccgcgcgcgc caacgcgatc ctgatcctca ccggcctctc gcccgacgcg catgccgcgg
      781 cgaacgcggc gaatcccgaa cccggctggt gggaaggcat gctcggcccg ggcaaggcga
      841 tcgacaccga ccgctggttc gtggtctgcg tcaattcgct gggcagctgc aagggctcga
      901 ccgggccggc gtcgaccgac cccgccaccg gcgagccgta ccggctcgac ttcccggagc
      961 tttcgatcga ggacggcgcc gaggccgcct tcgaggtcgt gcgcgcgctc ggcatcgggc
     1021 gcctcgcctg cgtgatcggc aactcgatgg gcggcatggt ggcgctcgcg ttcctgctgc
     1081 gccatccggg catcgcccgc agccacgtca acatctccgg cagcgcgcag gcgctgccgt
     1141 tctcgatcgc gatccgttcg ctgcagcgcg aagcgatccg gctcgacccg aactggaacg
     1201 acggccgcta cgacgacgcg cattaccccg acgcaggcat gcgcatggcg cgcaagctcg
     1261 gcgtgatcac ctaccgctcc gcgctggaat gggatggccg cttcggccgc gtgcgcctgg
     1321 agtccgaccg tcgcgacgag gaggcgttcg gcctcgaatt cgaggtcgag agctacctcg
     1381 aggcgcacgc gcgccgcttc gtgcggcgct tcgatcccaa ctgctacctc tacctgagcc
     1441 gctcgatgga ctggttcgac atggcggagc atggcggcgg cgacgtgatg cgcggcctcg
     1501 cccgcatcca ggtcgaacgg gcgctggcga tcggcgtgca caccgacatc ctgttcccgt
     1561 tgcagcagca ggagcagatc gccgacgggc tgcgcgccgg cggcgcgacc gcggagttcc
     1621 tgccgttgcc ctcgccgcag ggccacgacg ccttcctggt cgacatcgag cgcttcggtg
     1681 cggcggtggg aggcttcctg gcgggcttgt agcgggcctt ccggttcgat cccacggccg
     1741 cccggcgggc gcaggacgcc agccgtcgcc cggcttattc cggtttagaa tcagcccatg
     1801 aacgatgcgc ctgtcgcccc tgcctcgact tccccggcca ggccaggctg gtggccgccc
     1861 tcgatgcggc ggtc
//
LOCUS       DATIQC010000506         1954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_597919, whole genome shotgun sequence.
ACCESSION   DATIQC010000506 DATIQC010000000
VERSION     DATIQC010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_597919"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1954)
                     /locus_tag="VLM17_10865"
     CDS             complement(<1..>1954)
                     /locus_tag="VLM17_10865"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR66086.1"
                     /translation="ARALLEGDERAAQAVRDAYGALHAEVLRERLAGVPVERLKEIVP
                     RLPAARLEKAGFADIGAVLDAGTARLEQIDGVGRHSAAQAVAAARRMAEAVGQDVRIT
                     ADVDVGDERGTALLAALHRVRSAQSALERAREPARRIGDQFGGLMSAARPLSGRIRRL
                     LVGRKRREAARAAVAQLEEALAAPATDRDLKRIEAANERLRAAPARPPTVRRDFEKRA
                     ADYFAALERILGIRDDAEAARGFLPEDLIGSIGKQLLDTTHLRVTLRGYQEFGARFAL
                     AGRRVVLGDEMGCGKTVEAIAALAHLRAEGKRHFLVVCPASVLINWMREMRGHSSLRP
                     HRLHGGERDENLLAWAKGGGVGITTFETVHSLPLPGRPRVAMLVVDEAHYIKNPDARR
                     SKALREWTRRIDRVLFMTGTPMENRVEEFRNLVGYLQPGLVDSVDGIDAITGSKAFRR
                     AVAPAYLRRNQEDVLAELPQLTRIDEWEEFGPHELAAYRQAVEAGNFMAMRRAAYAAG
                     TAHGSAKLRRLIEIADEARQSGRKVVIFSHFREVLDIVCAALGERALGPLNGSMPSPR
                     RQELVDRFAKAHGHGVLVSQIQAGGVGINMQAASVVILCEPQVKPTLEAQAIARAHRL
                     GQVQKVQVHRLLVVDSVDERMLELLEG"
BASE COUNT          256 a          763 c          647 g          288 t
ORIGIN      
        1 ccctcgagca gctccagcat ccgttcgtcc acgctgtcga ccaccagcaa tctgtgtacc
       61 tgcaccttct gaacctggcc gagccggtgc gcgcgggcga tcgcctgcgc ctccagcgtc
      121 ggcttgacct gtggctcgca caggatgacc acggaggcgg cctgcatgtt gatcccgacg
      181 ccgccggcct ggatctggct gaccagcacc ccgtgcccat gcgccttggc gaaccggtcc
      241 acgagttcct ggcgccgcgg cgacggcatc gacccgttca gcggcccgag cgcccgctcg
      301 cccagtgccg cgcacacgat gtcgagcacc tcgcggaagt gggagaagat cacgaccttg
      361 cgtccggact ggcgcgcctc gtcggcgatc tcgatcagcc gccgcagctt cgccgaaccg
      421 tgcgccgtgc ccgcggcgta ggcggcgcgg cgcatcgcca tgaagttgcc cgcctccacc
      481 gcctgccggt acgcggccaa ttcgtgcggc ccgaactcct cccactcgtc gatgcgcgtg
      541 agctgcggca gttcggccag tacgtcctcc tggttgcgac gcaggtacgc cggcgcgacc
      601 gcgcggcgga aggccttgga cccggtgatc gcgtcgatcc cgtccaccga gtccaccagc
      661 cccggttgca gatagccgac cagattgcgg aactcctcga cccggttctc catcggcgtg
      721 ccggtcatga acagcacccg gtcgatccgg cgagtccact cccgtagcgc cttcgaacgc
      781 cgggcgtccg ggttcttgat gtagtgcgcc tcgtcgacca cgagcatcgc cacccgcggc
      841 cggcccggca gcggcaggct gtgcaccgtc tcgaacgtgg tgatgcccac accgccgccc
      901 ttcgcccagg ccagcaggtt ctcgtcgcgc tcgccgccgt gcagtcggtg gggccgcagg
      961 ctgctgtggc cgcgcatctc ccgcatccag ttgatcaaga cgctggcggg acacaccacg
     1021 aggaagtgcc gcttgccctc ggcgcgcagg tgtgctagtg cggcgatcgc ctccaccgtc
     1081 ttaccgcaac ccatctcgtc gccgagcacc acccgccggc cggccagggc gaaacgcgcc
     1141 ccgaactcct ggtagccacg cagcgtgacg cgcaggtgcg tggtgtccag gagctgtttc
     1201 ccgatgctac cgatcagatc ctccggcagg aaaccgcgcg cggcctcggc gtcgtcgcgg
     1261 atgccgagga tgcgctcgag cgcggcgaag tagtcggcgg cgcgcttctc gaagtcacgc
     1321 cgcaccgtgg gcgggcgcgc tggagcggcg cgcaagcgct cgttcgcggc ctcgatgcgc
     1381 ttgagatccc ggtctgtggc gggcgcggcg agtgcctcct caagctgcgc gacggcggcc
     1441 cgggccgcct cccggcgctt ccgcccgacc agtaaccggc gtatgcggcc gctcaggggc
     1501 ctggccgcgg acatcagacc gccgaactgg tcgccgatcc ggcgcgccgg ctcgcgggcg
     1561 cgctcgagcg cgctctgcgc gctgcgcacc cggtgcaggg cggccagcag ggccgtgccc
     1621 ctctcatcgc ccacgtccac atcggcggtg atccgcacgt cctgcccgac ggcctcggcc
     1681 attcgccggg cggcggccac cgcctgcgcg gcgctgtgcc gcccgacacc gtcgatctgc
     1741 tcgagccgtg ccgtcccggc gtcaagcacc gcgccgatgt cggcgaaccc ggccttctcc
     1801 agcctggcgg ccggcaggcg cggcacgatc tccttgagcc gctcaaccgg cacccctgcg
     1861 agccgctcgc gcagcacctc ggcgtgcagt gcgccgtacg cgtcacgcac cgcctgcgct
     1921 gcccgctcgt caccctccag gagggcgcgc gccg
//
LOCUS       DATIQC010000507         3253 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_67441, whole genome shotgun sequence.
ACCESSION   DATIQC010000507 DATIQC010000000
VERSION     DATIQC010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3253
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67441"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /gene="bioD"
                     /locus_tag="VLM17_10870"
     CDS             complement(<1..633)
                     /gene="bioD"
                     /locus_tag="VLM17_10870"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HSR66087.1"
                     /translation="MHGFFVTGTDTGIGKTRAATVLLHALRARGLRAVGMKPLASGCE
                     RTPEGWRNEDALALQAASDPRPRYADVNPYALPNPLAPQLAARDAGVDVQLAPILAAH
                     ARLQAQADAVVVEGVGGWAAPLADALMQADLVRALDVPVVLVVGLRLGCLNHAFLSAR
                     AIAADGCRLAGWIGNAIDPDMARAGDNLRLLAGGLPAPCWGVLPHAPAAEA"
     gene            700..1182
                     /locus_tag="VLM17_10875"
     CDS             700..1182
                     /locus_tag="VLM17_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014506539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HSR66088.1"
                     /translation="MFTAATLSGSKPEQYAQLLEQARGLLHGERDRIANAANLSALVY
                     HALPDLNWVGFYFFDGAELVVGPFQGLPACVRIPLDKGVCGAAARTRTTQLVEDVDAF
                     PGHIACDSASRSELVVPLYRGDALLGVFDLDSPLPGRFDVVDQRGLEAVAQAFLETCT
                     "
     gene            1179..1547
                     /locus_tag="VLM17_10880"
     CDS             1179..1547
                     /locus_tag="VLM17_10880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HSR66089.1"
                     /translation="MTAAKLRNIGPKSAAWLRQVGLRSRDDLAAIGTVEAFMRVRRAG
                     FKPSLNLLYAIEGALLDCHWQEIPDARRGELVLAAEAATAQLPPPRHRPAAAPVTTTM
                     HVPDAMPDLALFDQPAGDDA"
     regulatory      1615..1880
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1997..>3253
                     /locus_tag="VLM17_10885"
     CDS             1997..>3253
                     /locus_tag="VLM17_10885"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HSR66090.1"
                     /translation="MRSHSFVVASLVAAITAAPAHAQSDDASKLDAVVVTATRTATTV
                     DATLAAVDVITRADIDRSQARSLPELLRGRAGLTLVNQGGLGKLTTLFLRGAESDHVL
                     VLIDGVRVGSATSGLVSLQDLPLAEIERVEIVRGPRSSLYGSEAIGGVIQVFTRRAHA
                     GVHPRFSAGIGSHGYRDAGAGLGARNASAWFDVDGSWQRDDGINACTGFADDVNFIYA
                     GCGVARPDPDRDGYRARAVSLRGGLTPSEAWTLEGNALRSEGHNDYDSNPAFLLPDSS
                     DVVQQVVGGKLRYAPAARFALQLTAGRNLDASTQYLGDVFTDRFWSTRDSATLQGDLG
                     LAEGQLLTLGLDWLRDRGAVEGAFDTQVRGNRAAFVQYQGALGRQQLQAALRHDDNDQ
                     FGGHDTGSIAWGTDLGHGLRLTASHGT"
BASE COUNT          439 a         1266 c         1110 g          438 t
ORIGIN      
        1 ggcctccgcc gccggcgcat gcggcagcac gccccagcac ggcgccggca ggccgcctgc
       61 cagcaggcgc aggttgtccc cggcacgcgc catgtccgga tcgatcgcat tgccgatcca
      121 gccggccagc cggcagccgt cggcggcgat cgcgcgcgcg ctgaggaagg cgtggttgag
      181 gcaacccagg cgcaggccga ccaccagcac caccgggacg tcgagcgcgc gcacgaggtc
      241 ggcctgcatc agcgcgtcgg ccagcggcgc cgcccagccg ccgacgccct cgaccaccac
      301 cgcgtcggcc tgcgcctgca ggcgcgcgtg ggcggcgagg atcggcgcca gctgcacgtc
      361 cacgccggca tcgcgcgcgg ccagctgcgg cgcgagcgga ttgggcagcg catacgggtt
      421 cacgtccgcg tagcgcgggc gcggatcgct cgccgcctgc agcgccagcg catcctcgtt
      481 gcgccagcct tcgggcgtgc gctcgcagcc gctggccagc ggcttcatgc cgaccgcgcg
      541 cagcccgcgt gcgcgcagcg catgcaggag cacggtcgcg gcgcgcgtct tgccgatgcc
      601 cgtatcggtg ccggtgacga agaaaccgtg cattgccgcc gcctgcgccg ccatcgtggg
      661 cggacatggt aacggcaggc cccgcgctac actgcgcgca tgttcaccgc cgcgaccctt
      721 tccggcagca agccggaaca gtacgcgcag ctgctggagc aggcccgcgg cctgctgcac
      781 ggggagcgcg accgcatcgc caacgccgcc aacctgtcgg cgctggtcta ccacgcgttg
      841 cccgacctca actgggtcgg cttctatttc ttcgacggcg ccgagctggt ggtcgggccg
      901 ttccagggcc tgccggcctg cgtgcgcatc ccgctcgaca agggcgtgtg cggggcggcc
      961 gcgcgcaccc gcaccacgca gctggtcgag gacgtcgacg ccttccccgg ccacatcgcc
     1021 tgcgactcgg cctcgcgctc cgagctggtg gtgccgctct accgcggtga cgcgctgctc
     1081 ggcgtgttcg acctcgacag tccgcttccc ggccgtttcg acgttgttga ccagcgaggc
     1141 ctggaggcag tcgcgcaggc attcctggag acctgcacat gactgccgcg aagctgcgca
     1201 acatcggtcc caagtccgcc gcctggttgc gccaggtcgg cctgcgcagc cgcgacgacc
     1261 tcgccgcgat cggcacggtc gaagccttca tgcgcgtcag gcgcgccggc ttcaagccga
     1321 gcctcaacct gctgtacgcg atcgagggcg cgctgctgga ctgccattgg caggagatcc
     1381 ccgacgcccg ccgcggcgaa ctggtgctcg ccgccgaagc cgccaccgca cagctgccgc
     1441 cgccgcgcca ccgcccggcc gccgcgccgg tgaccacgac gatgcacgtg ccggacgcga
     1501 tgcccgacct cgccctcttc gaccagcccg ccggcgacga cgcctaggct ccgcccgttc
     1561 cgggcggccg ctgacacgag gcggccggct gtcgcacccg ctgcgcaacg gatacactcc
     1621 ccgccgcttc gaggtgaccc gcgggcgttc gcccaagggt tgaaacggga agccggtgac
     1681 gccgcacgca ctgcggccat tccggcactg cccccgcaac ggtaagcgcg caaacgccgc
     1741 cggcattcgc cactgtgcat cgcacgggaa ggcgccggcg gctggaacgg gtccctgcag
     1801 gcacgggcac gcgcccacgc caggcgaagg attcgttccg cccgcaagtc cggagaccgg
     1861 ccttggagtc tcgtggttgc gacgcggagg gcgtcgtggc ggcgacgcgt cgtcgcgcgt
     1921 cctcgctccg gtttccttcg catcgcggct cccttccttc agggcgcgcg ggcgtgcgcg
     1981 ccggagaccc cgtcccatgc gttcgcactc ctttgttgtt gccagcctcg ttgccgccat
     2041 caccgcggcg ccggcccacg cgcaatcgga cgacgcgtcg aagctcgacg ccgtcgtcgt
     2101 caccgccacc cgcaccgcca ccacggtcga tgccacgctc gccgcggtcg acgtcatcac
     2161 ccgtgccgac atcgaccgca gccaggcgcg ttcgctgccc gaactgctgc gtggccgcgc
     2221 cggcctgacg ctggtcaacc agggcgggct cggcaagctc accacgctgt tcctgcgcgg
     2281 cgccgagtcc gaccacgtgc tggtgctgat cgacggcgtg cgcgtcggct cggcgacttc
     2341 gggcctggtc tcgctgcagg acctgccgct cgcggagatc gagcgcgtcg agatcgtgcg
     2401 cggcccgcgc tccagcctgt acggttcgga agccatcggc ggcgtgatcc aggtgttcac
     2461 ccgccgcgcg cacgcgggcg tgcatccgcg cttttccgcc ggcatcggca gccacggtta
     2521 ccgcgacgcc ggagcggggc tcggtgcgcg caacgcgtcc gcgtggttcg acgtcgacgg
     2581 cagctggcag cgcgacgacg gcatcaacgc ctgcaccggt ttcgcggacg acgtgaactt
     2641 catctacgcg ggctgcggcg tcgcacgccc ggatcccgac cgcgacggct atcgcgcccg
     2701 tgcggtgtcg ctgcgcggcg gcctgacacc cagcgaggcg tggacgctgg agggcaatgc
     2761 cctgcgcagc gaaggccaca acgactacga ctccaacccc gccttcctgc tccccgacag
     2821 ctccgacgtc gtgcagcagg tggtcggcgg caagctccgc tacgcgccgg ccgcgcgctt
     2881 cgccctgcag ctgaccgccg gccgcaacct cgacgcctcg acccagtacc tcggcgacgt
     2941 cttcaccgac cgcttctgga gcactcgcga cagcgcgacg ctgcagggcg acctcgggct
     3001 cgccgaaggc cagctgctga ccctcggcct ggactggctg cgcgaccgcg gcgcggtgga
     3061 aggggcgttc gacacgcagg tgcgcggcaa ccgcgccgcc ttcgtgcaat accagggcgc
     3121 gcttggccgc cagcagttgc aggccgccct gcgccacgac gacaacgacc agttcggcgg
     3181 ccacgacacc ggcagcatcg catggggcac cgacctcggc cacggcctgc gcctgaccgc
     3241 gagccatggc acc
//
LOCUS       DATIQC010000508         6113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_526795, whole genome shotgun sequence.
ACCESSION   DATIQC010000508 DATIQC010000000
VERSION     DATIQC010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6113
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526795"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1258
                     /locus_tag="VLM17_10890"
     CDS             <1..1258
                     /locus_tag="VLM17_10890"
                     /inference="COORDINATES: protein motif:HMM:NF044995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HSR66091.1"
                     /translation="ILASVTGGDRRVAVPADRINQALVLGNRAQPLSTTPDPYHPERL
                     QLALASPAGTVPLGAGSVGGQLGGLMEFRGNVLDPARAELGRIATAFATEYNTTQQAG
                     VDYNGNAGATMFSLDAPRVAAHAANTGSATLAASVSGIGALQGADLVLRFDGSAWSAT
                     RKDDGGSVAMSGSGTAASPFVVNGLSLVVGGSAAAGDRFDVSPTTGAAGSLKLAISDP
                     LAIAAAAPLQVAAATTNTGGARAASTQVTDATAFASFSGATIDFLDSNTYTIDGAGPY
                     AYAAGTPIAAGGWSLSLAGTPAPGDSFTLARTPPRSADNANARALAALDQAGVLDGGT
                     TSVTSGIGQLTAQVGGDARHAQLSLDAQQTIHDQIGAERESISGVNLDEEAADMLRYQ
                     QAYQAAAQVMSTANTVFQTLLAAVRG"
     gene            1269..2477
                     /gene="flgL"
                     /locus_tag="VLM17_10895"
     CDS             1269..2477
                     /gene="flgL"
                     /locus_tag="VLM17_10895"
                     /inference="COORDINATES: protein motif:HMM:TIGR02550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HSR66092.1"
                     /translation="MALRVSTNGLYAQGLNNLQLRQSEIARLQQQISSGVKLTRAADD
                     PTGMASAQQLDHVLARLTQYDRDATLLGNRLTQQESALGDAGDVLARARELATQANND
                     ALSDDDRHAIALELRSLRASLLQTANRGDGQGRQLFAGTRDGVVPFTDNAGSVAYTGD
                     DGQNQVDIAPDVAVADANPGSEVFLRVPTGDGIGRGLAAGGNTGSGVLDTAQVTDPAA
                     WNGATLTLRFTSASTYEVVDGSGNPLAPPVAGSWTSGQTVTAQGVQFQVSGAPAGGDS
                     FTLGRAPNQDVFASLQQLADALDAPESIAADVARRANALRDGQKSLDMAQQHLLDLRA
                     DTGIRRNTLDNAADRRSADNENFSRMLSDLRDTDLPAAISQLNLKMVALDAAQQLMVR
                     MQASSLFNKL"
     gene            2620..5115
                     /locus_tag="VLM17_10900"
     CDS             2620..5115
                     /locus_tag="VLM17_10900"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HSR66093.1"
                     /translation="MTAKRPAMPASASRHDDRDATVSVAELGSLLARHPRVKLLSLDC
                     FDTILWRRVDHPADVFYTLQHDPAFAAHGLDARLRVRAEQQARELAAVQRDSHEVTLD
                     EVYRTALPGIPGDAVVALEEAELAAEIQACQALPAAVALLRDARARGIEVMVVSDTYL
                     REPQLRRLLQACLPEDAFGAIRRIVVSSEHGVGKAGGLFTKIRDRMNLPVARMLHVGD
                     NPLADLHPARDAGIASLQLKHLPEALEARRQYRATALRLLEPEVRARRPMPAGYHPVL
                     AGMQHDEDDIDQAIGHASLGPMMHAFASWLLERKRALEAQGRRVKLAFLLRDGYLPHA
                     AATALAGEDVGKPVYLSRYAAFAASFRDAGDVQRYLALFAGSAQHEAMLRQLGVEDAA
                     AGRILAAVRNHPRPAQEFARRVLAPDLLARIVARSAAYRARLKTYLERELGLAAGDTL
                     VFVDLGYVGTAQRVLAPMMREDWDVDLHGWYFMCTPQAGTGDSRHGLVDCSRFDARTI
                     DTLLPFVSLLENLCTTGAGSVVDYAEDGTPRLARNSTGKQQTQKVERIQRHCLAFVRA
                     AERHYADGAPRPGADTLRDTALAEFARMVFFPDAAELAHYDQFALELNLGTDRVVRLH
                     DTGRSLAELRRHGLFYAARRGDDQRINTPHELRHAGMEMTLAMMSTYRYGLAFSAKDW
                     TLREESLPVILLRGQESTRHELAARSTHDGCFRLRVPLGKGDSHAGVLFGDRYRWLQL
                     IEARVLRVGDLHLDADPDAGIDVRDHLLLDGIEHAGDGLLHCTGQPALAMLPAGMVSS
                     GHNLTLDLVFRPLSGREAPDMAGAADTAAACAG"
     gene            5159..6085
                     /locus_tag="VLM17_10905"
     CDS             5159..6085
                     /locus_tag="VLM17_10905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66094.1"
                     /translation="MPLQSVTLLLGSPFSGSSLLGQSLNDVAGIAYAGEIDNMHAFGF
                     DMHRASNHYRSRCVICETHERYDCPIYPPGPYLLRDPGSVPIEDYLEVLSRFGAPFVV
                     DGSKNVDWLWYLHQRGLLDALPTRAILVARSVWAFVASQLRTGTANPYQAAEGWRNIY
                     RHALRTISLLAVPNLVVRHEAFVADSDKWLSRAAWFVSDRPHNLFEPKPLHCVGGNPS
                     AYAIRSEFDRQGHLHVQRDDDDRSLSLEKFAFFGGDAPRNQAIARWAARIDRDQARAI
                     LAIPGVMDTMLDLGYDPLRILEEHAALLAAAA"
BASE COUNT          900 a         2402 c         2041 g          770 t
ORIGIN      
        1 gatcctcgcc agcgtcaccg gcggcgaccg tcgggtcgcg gtcccggccg accggatcaa
       61 ccaggcgctg gtgctcggca accgggcgca gccgctgtcg accacgcccg acccgtacca
      121 ccccgagcgc ctgcagctcg cgctcgcctc ccccgccggc acggtgccgc tcggcgccgg
      181 cagcgtcggc ggccagctcg gcgggctgat ggagttccgc ggaaacgtgc tggacccggc
      241 gcgcgccgaa ctcggccgca tcgccaccgc gttcgcgacc gaatacaaca cgacccagca
      301 ggcgggcgtc gactacaacg gcaacgccgg cgcgacgatg ttctcgctgg acgcgccccg
      361 cgtcgccgcg cacgcggcca acaccggcag cgcgacgctc gccgccagcg tgtccggcat
      421 cggcgcgctg cagggcgcgg acctggtgct gcgcttcgac ggcagcgcgt ggagcgcgac
      481 ccgcaaggac gacggcggca gcgtggcgat gagcggcagc ggcacggccg ccagtccgtt
      541 cgtggtcaac ggcctgtcgc tggtggtcgg cggcagcgcc gcggccggcg accgcttcga
      601 cgtcagcccg accaccggcg cggccggttc gctcaagctg gcgatcagcg atccgctggc
      661 gatcgccgcc gccgcgccgc tgcaggtcgc cgcggcgacg acgaacaccg gcggcgcgcg
      721 cgcggcctcg acccaggtca ccgacgccac cgcgttcgcc tccttcagcg gggcgacgat
      781 cgacttcctc gacagcaaca cctacaccat cgacggcgcc ggcccgtatg cctacgccgc
      841 cggcacgccg atcgccgccg gtggctggtc gctgtcgctc gccggcacgc ccgcgccggg
      901 cgacagcttc accctcgccc gcacgccgcc gcgctcggcc gacaacgcca atgcgcgcgc
      961 gctggccgcg ctcgaccagg ccggcgtgct cgacggcggc accaccagcg tcaccagcgg
     1021 catcggccag ctcaccgcgc aggtcggcgg cgacgcgcgc cacgcgcagc tgtcgctgga
     1081 cgcgcagcag accatccacg accagatcgg cgccgagcgc gaatcgatct cgggcgtcaa
     1141 cctcgacgag gaggccgccg acatgctgcg ctaccagcag gcctaccagg ccgcggcgca
     1201 ggtgatgtcg accgccaaca ccgtgttcca gaccctgctc gccgcggtac gcggctgacg
     1261 aggacgccat ggcgctgcga gtttccacca acggcctgta cgcgcaggga ctgaacaacc
     1321 tgcagctgcg ccagagcgag atcgccaggc tgcagcagca gatcagcagt ggcgtgaagc
     1381 tgacccgcgc ggccgacgat cccaccggca tggcatcggc gcagcagctc gaccacgtgc
     1441 tcgcccggct cacccagtac gaccgcgacg ccaccctgct cggcaaccgc ctgacccagc
     1501 aggaaagcgc cctcggcgac gcgggcgacg tgctggcgcg cgcgcgcgaa ctggccaccc
     1561 aggccaacaa cgacgcgctc tccgacgacg accgccacgc gatcgcgctg gagctgcgca
     1621 gcctgcgcgc cagcctgctg cagaccgcca accgcggcga cggccagggc cggcagctgt
     1681 tcgccggcac gcgcgatggc gtcgtgccct tcaccgacaa cgccggcagc gtcgcctaca
     1741 ccggcgacga tggccagaac caggtcgaca tcgccccgga cgtggcggtg gccgacgcca
     1801 accccggcag cgaagtgttc ctgcgcgtgc ccaccggcga cggcatcggc cgcggcctcg
     1861 ccgccggcgg caacaccggc agcggcgtgc tcgacaccgc ccaggtcacc gatccggccg
     1921 cctggaacgg cgccaccctg accctgcgct tcacctccgc cagcacctac gaagtggtcg
     1981 acggcagcgg caatccgctg gcgccgccgg tcgccggcag ctggaccagc ggccagacgg
     2041 tcaccgcgca gggcgtgcag ttccaggtca gcggcgcgcc cgcgggcggc gacagcttca
     2101 ccctcgggcg cgcgcccaac caggacgtgt tcgcctcgct gcagcagctc gccgacgcgc
     2161 tcgatgcgcc ggaaagcatc gccgccgacg tcgcccgccg cgcaaacgcc ctccgcgacg
     2221 gccagaagag cctggacatg gcgcagcagc acctgctcga cctgcgcgcc gacaccggca
     2281 tccgccgcaa cacgctggac aacgccgccg accgtcgcag cgccgacaac gagaacttca
     2341 gcaggatgct gtcggacctg cgcgacaccg acctgccggc ggccatcagc cagctcaacc
     2401 tgaagatggt cgcgctggac gccgcccagc agctgatggt caggatgcag gcgagctcgc
     2461 tgttcaacaa gctctgatgc ggcgggagcg gtccggaacg gcggccatcg acgggcgccg
     2521 cccgtcgggc ctggagagcg cgctgcccgg gccccgcagc gcctgaaggc cggcagcccg
     2581 ggggcttccg ctggaacgcg ccttgcatgg ctcggggcga tgaccgccaa gcgccccgcc
     2641 atgcccgcct ccgcctcccg ccacgacgac cgcgacgcca ccgtctccgt cgccgagctc
     2701 ggttcgctgc tcgcgcgcca cccgcgcgtc aaactgctgt cgctggactg cttcgacacc
     2761 atcctctggc gccgggtcga ccatccggcc gacgtcttct acacgctgca gcacgacccg
     2821 gccttcgccg cccacggcct cgacgcgcgc ctgcgcgtgc gcgccgagca gcaggcgcgc
     2881 gagctggcgg cggtgcagcg cgattcgcac gaggtcaccc tcgacgaggt ctaccgcacc
     2941 gcgctgcccg gcatccccgg tgatgccgtc gtcgcgctgg aggaagccga actcgccgcc
     3001 gagatccagg cctgccaggc cctgcccgcg gcggtcgccc tgctgcgcga cgcgcgggcg
     3061 cgcgggatcg aggtgatggt cgtgtccgat acctacctgc gcgaaccgca actgcgccgc
     3121 ctgctccagg cctgcctgcc ggaggacgcg ttcggcgcga tccgccgcat cgtcgtctcc
     3181 agcgagcatg gcgtcggcaa ggccggcgga ctgttcacga agatccgcga tcgcatgaac
     3241 ctcccggtcg cgcggatgct gcacgtcggc gacaacccgc tcgccgacct ccatcccgcg
     3301 cgcgatgccg gcatcgccag cctgcagctg aaacacctgc ccgaagcgct ggaggcgcgt
     3361 cgccagtacc gcgccaccgc cctgcgcctg ctcgagcccg aggtgcgcgc gcgccggccg
     3421 atgcccgccg gctaccaccc cgtgctcgcc ggcatgcagc acgacgagga cgacatcgac
     3481 caggcgatcg gccacgccag cctcgggccg atgatgcatg ccttcgccag ctggctgctg
     3541 gaacggaagc gcgcgctgga agcacagggc cgccgcgtca agctcgcctt cctgctgcgc
     3601 gacggctacc tgccgcacgc ggcggccacc gcgctcgccg gcgaggacgt cggcaagccg
     3661 gtgtacctgt cgcgctacgc cgcgttcgcc gcgtccttcc gcgacgcggg cgacgtgcag
     3721 cgctacctcg cgctgttcgc cggatcggcc cagcacgagg cgatgctgcg ccagctcggc
     3781 gtcgaggacg ccgccgccgg gcgcatcctc gcggcggtac gcaaccaccc gcggccggcg
     3841 caggaattcg cgcgccgcgt cctcgcaccg gacctgctcg cgcgcatcgt cgcgcgctcg
     3901 gccgcctacc gcgcgcgcct gaagacctac ctcgagcgcg agctcggcct cgccgcaggc
     3961 gacacgctgg tgttcgtcga cctcggttac gtcggcaccg cccagcgggt gctcgcgccg
     4021 atgatgcgcg aggactggga cgtcgacctg cacggctggt acttcatgtg cacgccgcag
     4081 gccggcaccg gcgacagccg acacggcctg gtcgactgca gccgcttcga cgcgcgcacc
     4141 atcgacaccc tgctgccgtt cgtctcgctg ctggagaacc tgtgcaccac gggcgccggc
     4201 tcggtcgtcg actacgccga ggacggcacg ccgcggctgg cgcgcaactc caccggcaag
     4261 cagcagacgc agaaggtcga gcgcatccag cgccattgcc tcgccttcgt gcgcgcggcc
     4321 gaacgccact acgcggacgg cgccccgcgc cccggcgcgg acacgctgcg cgacaccgcc
     4381 ctcgccgagt tcgcgcgcat ggtgttcttc cccgacgcgg cggagctcgc ccactacgac
     4441 cagttcgcgc tcgaactcaa cctcggcacc gatcgcgtgg tgcgcctgca cgacaccggg
     4501 cgcagcctcg ccgagctgcg gcgccacggc ctgttctacg ccgcccgccg cggcgacgac
     4561 cagcgcatca acacgccgca cgagctgcgc cacgccggca tggagatgac cctggcgatg
     4621 atgtccacct accgctacgg cctggccttc agcgcgaagg actggacgct gcgcgaggag
     4681 tcgctgccgg tgatcctgtt gcgcgggcag gagtcgaccc ggcacgagct cgccgcgcgg
     4741 tccacccacg acggctgctt ccgcctgcgc gttccgctcg gcaagggcga ttcgcatgcc
     4801 ggcgtgctgt tcggcgatcg ctatcgctgg ctgcaactga tcgaggcgcg cgtgctgcgc
     4861 gtcggcgacc tgcacctgga cgcggacccc gacgcgggca tcgacgtccg ggaccacctg
     4921 ctgctggacg gcatcgagca cgccggcgac gggctgctgc actgcaccgg ccaaccggcg
     4981 ctggcgatgc tgccggccgg gatggtgtcc agcgggcaca acctcaccct cgacctggtg
     5041 ttccggccgc tgtcgggacg cgaggccccc gacatggcgg gcgccgcgga cacggccgct
     5101 gcgtgcgcgg gctgacatgg aacggatggc gcacgaccca gatgcaagcc aacggcccgt
     5161 gcccctgcag tcggtgacgc tgctgctcgg cagcccgttc tcgggctcca gcctgctcgg
     5221 ccagagcctc aatgacgtcg ccggcatcgc ctacgcgggc gagatcgaca acatgcacgc
     5281 gttcggcttc gacatgcatc gcgcgagcaa ccactaccgc tctcgctgcg tgatctgcga
     5341 aacacacgaa cgctacgatt gcccgatcta tcccccgggg ccttacttgc tgcgcgatcc
     5401 aggaagcgtg cccatcgagg attacctcga ggtgctgtcg cgcttcggcg cgcccttcgt
     5461 cgtcgacggc tccaagaacg tggactggct ctggtacctg caccagcgcg ggctgctcga
     5521 cgcgctgccg acccgggcga tcctggtcgc gcgttcggtc tgggccttcg tcgcaagcca
     5581 gctgcggacg ggcaccgcaa acccttacca ggccgcggaa ggctggcgga acatctatcg
     5641 ccatgcgctg cgcacgatct cgctgctcgc cgtccccaac ctcgtggtcc gccacgaagc
     5701 cttcgtcgcc gacagcgaca aatggctgtc gcgcgccgcg tggttcgtgt cggaccggcc
     5761 gcacaacctg ttcgagccca agcccctgca ttgcgttggc ggcaatccga gcgcgtacgc
     5821 gatccgcagt gaattcgacc ggcaggggca cctccacgtc cagcgtgacg acgacgaccg
     5881 ttcgctttct cttgagaagt tcgcgttctt cggcggcgat gcaccgcgca accaggccat
     5941 cgcgcggtgg gcggccagga tcgaccgcga ccaggcgcgt gcgatcctcg cgatcccggg
     6001 cgtgatggac accatgctcg acctcggcta cgacccgctg cgcatcctcg aggaacacgc
     6061 cgcgctgctc gccgcggcgg cctgaggccg agccggcccg cgcgcgccgt gcg
//
LOCUS       DATIQC010000509         6864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_32686, whole genome shotgun sequence.
ACCESSION   DATIQC010000509 DATIQC010000000
VERSION     DATIQC010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6864
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32686"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..2013)
                     /gene="ftsH"
                     /locus_tag="VLM17_10910"
     CDS             complement(106..2013)
                     /gene="ftsH"
                     /locus_tag="VLM17_10910"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HSR66095.1"
                     /translation="MNDLAKNLMLWAVVAVVLMVVFQSFSPKTAGSDALTYDQFVQEV
                     QDNRISKVSIGEDRTTISGERKDGTRFTTYAPADKDLVNDLLRHDVTTVQAPPSSGLS
                     LGVILINILPWLLFIGIWVYFMRQMQQGGGKGAMSFGRSRAKLLNEDQTKVTFADVAG
                     CDEAKEEVSELVEFLRDPGKFQKLGGRIPRGVLMVGPPGTGKTLLAKAIAGEAKVPFF
                     SISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGLGGGHDERE
                     QTLNQLLVEMDGFEGGEGVIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVKGREQI
                     LKVHMRKVPLADDVEPMVVARGTPGFSGADLANLVNEAALFAARENAKDVRMDHFDRA
                     RDKILMGTERRSMAMSEQEKTLTAYHEAGHAIVGRLVPEHDPVYKVTIIPRGRALGVT
                     MYLPEGDKYSYNKTAIESQLCSLYGGRVAEELIFGNEKVTTGASNDIERATKMARNMA
                     TKWGLSELGPITYGEEEDEVFLGRSVTQHKNVSDATARKIDEVVRGILDTAYGRSKKI
                     LTDNLDKLHTMAKLLLQYETIDAPQIDAIMEGRDPPPPAGWNKSGGNGKSDDTPPRPL
                     SPVPAGPAAQT"
     gene            complement(2060..2683)
                     /gene="rlmE"
                     /locus_tag="VLM17_10915"
     CDS             complement(2060..2683)
                     /gene="rlmE"
                     /locus_tag="VLM17_10915"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005924322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016436 - rRNA (uridine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HSR66096.1"
                     /translation="MAARSKSSQRWLKEHFSDPYVKKAQAEGLRSRAAYKLEELVERD
                     RLLKPAMVVVDLGAAPGGWSQWVRQALGDSGRVIALDILEMPTLAGVEFLHGDFREDD
                     VLSRLEAALGGHPVDLVLSDMAPNKSGVDAVDQPRGMHLAELAMEFADRHLRPGGSFL
                     IKLFQGVGFDEYVRELRQRYARVVIRKPAASRKRSPEVYALAQDKRR"
     gene            2747..3058
                     /gene="yhbY"
                     /locus_tag="VLM17_10920"
     CDS             2747..3058
                     /gene="yhbY"
                     /locus_tag="VLM17_10920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004087669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HSR66097.1"
                     /translation="MSLALTNAQIRFLRGQAHDLKAMLQVGGKGVTDSLVAEVGNALD
                     QHELIKVKVACEDRDERDAMIAELAGRADAALVQRIGHTAVLFRPNPEKRRIVLPRAR
                     D"
     gene            3101..3481
                     /locus_tag="VLM17_10925"
     CDS             3101..3481
                     /locus_tag="VLM17_10925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mth938-like domain-containing protein"
                     /protein_id="HSR66098.1"
                     /translation="MQLNLERPDYSWFLRGADGRHVLVNERALTRSCVFSPDTLVEDW
                     PVTDARAMAPADLDALLALRPELVVLGTGEAQVFPAAAVLAACLGRGIGLEVMDNAAA
                     ARTYSVLAGEGRRVVAGFVLPPSG"
     gene            3620..6442
                     /locus_tag="VLM17_10930"
     CDS             3620..6442
                     /locus_tag="VLM17_10930"
                     /inference="COORDINATES: protein motif:HMM:NF013736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSR66099.1"
                     /translation="MVLQALSGNSAGNAAAQRRVFDAMPAPVFTCDAAGRFTYVNAAW
                     RQLLGYTDDELLALDFEDLADEATVREWREAVAQVSDGLDGFTCENQLRHRDGSPRWL
                     ACNVRAVREDDGALRGLLGVAMDVGKRKRGEVLQAGLRDVLEQMALGAGLPQVLLRLT
                     EVIEAALDYGARASIQLVTDDGRHLAPAAAPNLPPDYLDEAGGLSIAEGAGNCGTAAF
                     RREPVFVTDTRRDPLWRDFQPLAARYDIGAAWSMPIVSGRGRLLGTFAVYYREPRRPT
                     HAERTMLELASRSAMVALERVQAEDALRARGEQFRRAIQDAPIPVMLHAEDGQVLQLS
                     NVWTELTGYTLGDTKALRRLLARAYGADEHDLGPAVQRLFGHEGAAQLQTELPVETRN
                     GQRLTWTLSASSPGQLRDGRRFVVAMAVDITERKRTERQLRASEERASLATRVAQVGI
                     WSWEPDTNHFEADPRCREILGVPADAPMAFDPGMPHLHPDDRELARRGLELALDPQGS
                     GHYEAELRVLRADGSMRWISGRAQCVFRGSGRRRRPALLLGSLIDITESKHMQESLLE
                     ADRRKDEFLATLAHELRNPLAPLRNCLHVLKMHDVDDPHAARLHAMMDRQVAQMVRLV
                     DDLLEVSRITRGNVELRKRPVALAEILSSAVETSRPLLDQGGHRIEVHTPPPTVMLHA
                     DPMRLEQVFTNLLNNAAKYTPPGGRIVVKTRVEDGMAQVSVCDNGIGLPAEMLVQVFD
                     MFTQCEHSRSQAQGGLGIGLTLVRSLVEQHGGRVEARSEGLGFGSEFIVHLPLLQHAH
                     DARSESLAPPPLVPHPRSVLVADDNHESADSMALFLRLSGHDVRTVYDGRACLEAIGE
                     ARPDVVLLDIGMPLLDGYETCRRIRALPDGDDIIVFATTGWGQDADRERSSAVGFDAH
                     LVKPVDPGALLARLDALPEHHSRPAH"
     gene            6502..>6864
                     /locus_tag="VLM17_10935"
     CDS             6502..>6864
                     /locus_tag="VLM17_10935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66100.1"
                     /translation="MPAIATLSRPLLPLALLALAACSTVDGAGRRVAPGEPFDLTPGA
                     QATLADGGTLRYVALVNDSRCAPDVQCIWAGDAEITIEWTPRAGGSERFGLHTLPANS
                     RHALDAGRSLRLVALARGP"
BASE COUNT          955 a         2486 c         2406 g         1017 t
ORIGIN      
        1 gtcatgctac gccgccgcgg cgcggcggcg gatggaaaaa agcccccgca tcgctgcggg
       61 ggctctggtg acaacgggcg tgcccgcggc gggcggccag cctggtcagg tctgcgcggc
      121 gggcccggcc gggaccggcg acagcgggcg cggcggcgtg tcgtcggact tgccgttgcc
      181 ccccgacttg ttccagccgg cgggcggcgg cggatcgcgg ccttccatga tcgcgtcgat
      241 ctgcggcgcg tcgatggtct cgtactgcag cagcagcttg gccatcgtgt gcagcttgtc
      301 gaggttgtcg gtgaggatct tcttgctgcg gccgtaggcg gtgtcgagga tcccgcgcac
      361 gacctcgtcg atcttgcgcg ccgtcgcgtc ggagacgttc ttgtgctgcg tcaccgagcg
      421 accgaggaac acctcgtcct cctcctcgcc gtaggtgatc ggcccgagct cggacaggcc
      481 ccacttggtc gccatgttgc gcgccatctt ggtcgcgcgc tcgatgtcgt tggaggcgcc
      541 ggtggtgacc ttctcgttgc cgaagatcag ctcctcggcg acgcggccgc cgtacagcga
      601 gcacagctgc gattcgatcg cggtcttgtt gtagctgtac ttgtcgcctt ccggcaggta
      661 catggtcacg cccaaagctc ttcctctggg aatgatcgtg accttgtaga ccgggtcgtg
      721 ctccggcacc aggcggccga cgatggcgtg cccggcctcg tggtaggcgg tgagcgtctt
      781 ctcctgctcg ctcatcgcca tcgagcggcg ctcggtgccc atcaggatct tgtcgcgcgc
      841 gcggtcgaag tggtccatgc gcacgtcctt cgcattctcg cgcgccgcga acagcgccgc
      901 ctcgttgacg aggttggcga ggtccgcgcc ggagaagccc ggcgtgccgc gcgcgaccac
      961 catcggctcg acgtcgtcgg ccagcggcac cttgcgcatg tgcaccttga ggatctgctc
     1021 gcggcccttc acgtccggca ggcccacgac gacctggcga tcgaagcggc ccgggcgcag
     1081 cagcgccggg tcgagcacgt ccgggcggtt ggtcgcggcg atcacgatca cgccctcgcc
     1141 gccctcgaag ccgtccatct ccaccagcag ctggttgagg gtctgctcgc gctcgtcgtg
     1201 gccaccgccg aggccggcgc cgcgatggcg gccgaccgcg tcgatctcgt cgatgaagat
     1261 gatgcacggg gcgtgcttct tcgcctgctc gaacatgtcg cgcacgcggc tggcgccgac
     1321 gccgacgaac atctcgacga agtcggaacc ggaaatcgag aagaacggga ccttggcctc
     1381 gccggcgatc gccttggcga gcagcgtctt gccggtgccc ggcgggccga ccatcagcac
     1441 gccgcgcggg atgcgcccgc cgagcttctg gaacttgccc gggtcgcgca ggaactcgac
     1501 cagctccgac acttcctcct tcgcctcgtc gcagccggcg acgtcggcga aggtgacctt
     1561 ggtctggtcc tcgttgagca gcttggcgcg cgagcggccg aaggacatcg cgcccttgcc
     1621 gccgccctgc tgcatctgcc gcatgaagta cacccagatg ccgatgaaca gcagccaggg
     1681 gaggatgttg atcaggatga cgcccagcga cagcccgctc gacggcggcg cctgcacggt
     1741 ggtgacgtcg tggcgcagca ggtcgttgac caggtccttg tcggccggcg cgtaggtggt
     1801 gaagcgggtg ccgtccttgc gctcgccgga gatcgtggtg cggtcctcgc cgatgctcac
     1861 cttcgagatg cggttgtcct gcacctcctg cacgaactgg tcgtaggtga gcgcgtcgct
     1921 gccggccgtc ttcgggctga agctctggaa gaccaccatc agcacgacgg ccactaccgc
     1981 ccacagcatc aggttcttgg cgaggtcgtt catcttgcgc atccggtggg ggtctctctg
     2041 tactgctgca attcggggat cagcggcgct tgtcctgcgc gagggcgtag acctcgggcg
     2101 aacgcttgcg ggaggccgcc ggtttccgga tcacgacgcg agcatagcgc tggcgcagct
     2161 cgcgtacgta ttcgtcgaac cccacgccct ggaacagctt gatcaggaag ctgccgcccg
     2221 ggcgcaggtg cctgtcggca aactccatcg ccagctctgc aaggtgcatg ccgcgtggct
     2281 ggtcgacggc gtccacgcca ctcttgttgg gggccatgtc ggaaagcaca aggtcgacgg
     2341 gatggccacc gagtgcggct tcgagccgcg ataagacgtc atcttccctg aagtcgccat
     2401 gaagaaactc gacgccggcg agcgtgggca tctcgaggat gtccagcgcg atcacccgcc
     2461 cgctgtcgcc cagcgcctgc cgcacccact gcgaccagcc gccgggcgcc gcgccgaggt
     2521 cgaccacgac catggccggc ttcaggagcc ggtcgcgctc gaccagctcc tccagcttgt
     2581 acgcggcgcg cgagcgcagc ccctcggcct gcgccttctt cacgtagggg tcggagaaat
     2641 gctctttcag ccagcgctgg ctggacttgc tgcgggcggc cacgtcggcg gggagcgagg
     2701 tcggaacgtc atgataccct gacgttcccc tgccattccg tgtcccatgt cgctcgcgct
     2761 gaccaacgcc cagatccgtt tcctccgcgg tcaggcgcac gatctcaagg cgatgctgca
     2821 ggtgggcggc aagggcgtca ccgactcgct ggtggcggaa gtcggcaacg cgctggacca
     2881 gcacgaactc atcaaggtga aggtggcctg cgaggaccgt gacgagcgcg acgcgatgat
     2941 cgccgaactc gccggccggg ccgacgcggc gctggtgcag cggatcggcc ataccgcggt
     3001 gctcttccgg cccaatcccg aaaagcgccg gatcgtgctg ccgcgcgcca gggactgata
     3061 agccgcgggg cccctgcggc ccccggtgcg gcgccacgcc atgcagctca acctcgaacg
     3121 ccccgactac agctggttcc tgcgcggcgc cgacggtcgc cacgtgctgg tgaacgagcg
     3181 cgcgctgacc cgcagctgcg tgttctcgcc ggatacgctg gtcgaggact ggccggtcac
     3241 cgatgcccgc gcgatggcgc ccgcggacct cgatgcgctg ctcgcgctgc ggcccgaact
     3301 ggtcgtgctc ggcaccggcg aggcccaggt cttcccggcc gctgccgtgc tggccgcctg
     3361 cctggggcgc gggatcggcc tcgaggtcat ggacaacgcc gccgccgcgc gcacctacag
     3421 cgtcctggcc ggggaaggca ggcgggtggt cgcggggttc gtgctgcccc cctccggctg
     3481 aacgcttcac cgccctcacg ggccgtgcac gcctttttca cgccgcgccc ccgcccctcg
     3541 cgctatcgcg gatgaccggg cgtgctcggc cgcttcgttg cagccggtgt tgtcggcccg
     3601 gaacgagcga ggcggcagga tggtcctcca ggcactcagc gggaacagcg ccggcaacgc
     3661 cgcggcgcag cgccgcgtgt tcgacgccat gcccgcgccg gtgttcacct gcgacgccgc
     3721 gggccggttc acctacgtca acgcggcctg gcggcaactg ctgggctaca cggacgacga
     3781 actgctcgcg ctggacttcg aggacctcgc cgacgaggcc acggtgcgcg agtggcgcga
     3841 agcggtggcg caggtctccg acgggctcga cggtttcacc tgcgagaacc agctgcgcca
     3901 tcgcgacggc tccccgcgct ggctcgcctg caacgtgcgc gcggtgcgcg aagacgacgg
     3961 tgcgctgcgc ggcctgctcg gcgtggcgat ggacgtcggc aagcgcaagc gcggcgaggt
     4021 cctgcaggcg ggcctgcgcg acgtgctcga gcagatggcg ctgggcgccg gccttccgca
     4081 ggtgctgctg cggctgaccg aagtgatcga ggccgcgctg gactacggcg cgcgcgcctc
     4141 gatccagctg gtgaccgatg atggtcgcca cctcgcgccc gccgcggcgc cgaacctgcc
     4201 tccagactac ctcgacgagg ccggcgggct gtcgatcgcg gaaggcgcgg gcaactgcgg
     4261 caccgccgcg ttccgccgcg agccggtgtt cgtcaccgac acccgccgcg atccgctctg
     4321 gcgcgatttc cagccgctgg cggcgcgcta cgacatcggc gccgcctggt cgatgccgat
     4381 cgtgtccggc cgcggccgcc tgctcggcac cttcgccgtc tactaccgcg agccgcgccg
     4441 cccgacccac gccgagcgca cgatgctcga gctcgccagc cgcagcgcga tggtcgccct
     4501 cgagcgcgtg caggccgagg acgcgctgcg cgcgcgcggc gagcagttcc ggcgcgcgat
     4561 ccaggacgcg ccgatcccgg tcatgctgca cgccgaggac ggacaggtgc tgcagctgag
     4621 caacgtctgg accgaactca ccggctacac gctgggcgac accaaggcgc tgcgccgcct
     4681 gctggcgcgc gcgtatgggg ccgacgagca cgacctcggc ccggcggtgc agcgcctgtt
     4741 cggccacgag ggcgcggcgc agctgcagac cgagctgccg gtggagacgc gcaacggcca
     4801 gcgcctgacc tggaccctga gcgcgtcctc gccgggccag ctgcgcgacg gccgccgctt
     4861 cgtggtggcc atggcggtgg acatcaccga acgcaagcgc accgagcggc agctgcgcgc
     4921 gagcgaggag cgcgcctcgc tggccacgcg ggtggcgcag gtcgggatct ggagctggga
     4981 gccggacacc aaccatttcg aagccgaccc gcgctgccgc gagatcctcg gtgtgcccgc
     5041 cgatgcgccc atggccttcg acccgggcat gccgcacctg caccccgacg accgcgaact
     5101 cgcgcgccgc gggctcgaac tcgcgctcga ccctcagggc agcggccact acgaggcgga
     5161 gctgcgcgtg ctgcgcgccg acggatcgat gcgctggatc tccggccgcg cgcagtgcgt
     5221 gttccgcggc agcggcaggc ggcgccgccc cgccctcctg ctcggctcgc tgatcgacat
     5281 caccgagagc aagcacatgc aggaatcgct gctcgaggcg gaccggcgca aggacgagtt
     5341 cctcgccacc cttgcccacg agctgcgcaa tccgctggcg ccgctgcgca actgcctgca
     5401 cgtgctgaag atgcacgacg tcgacgatcc gcacgccgcg cgcctgcacg cgatgatgga
     5461 ccgccaggtc gcgcagatgg tgcggctggt cgacgacctc ctggaggtgt cgcggatcac
     5521 ccgcggcaac gtcgagctgc gcaagcggcc ggtggcgctc gccgaaatcc tctccagcgc
     5581 ggtcgagacc agccgcccgc tgctcgacca gggcggacac cgcatcgagg tgcacacgcc
     5641 gccgccgacg gtgatgctcc acgcggaccc gatgcggctg gaacaggtct tcaccaacct
     5701 gctcaacaac gccgccaagt acacgccacc gggcggccgc atcgtggtga agacgcgcgt
     5761 ggaggacggc atggcgcagg tgtcggtgtg cgacaacggc atcggcctgc ccgcggagat
     5821 gctcgtgcag gtgttcgaca tgttcaccca gtgcgagcac agccgctcgc aggcgcaggg
     5881 cgggctgggc atcggcctga ccctggtgcg cagcctggtc gagcagcacg gcggccgggt
     5941 cgaggcgcgc agcgaagggc tcggcttcgg cagcgagttc atcgtccacc tgccgctgct
     6001 gcagcacgcg cacgacgcgc gctcggaaag cttggccccg ccgccgctgg tgccgcatcc
     6061 gcgctcggtg ctggtcgccg acgacaacca cgagagcgcc gactcgatgg cgctgttcct
     6121 gcgcctgagc ggccacgacg tgcgcacggt gtacgacggc cgcgcctgcc tggaggcgat
     6181 cggcgaggcg cggccggacg tggtgctgct ggacatcggc atgccgctgc tcgacggcta
     6241 cgaaacctgc cggcgcatcc gcgcgctgcc cgacggcgac gacatcatcg tgttcgccac
     6301 caccggctgg ggccaggacg cggaccgcga gcgcagcagc gcggtcggct tcgacgcgca
     6361 cctggtcaag ccggtcgatc ccggcgcgct gctggcgcgg ctggacgcgc tgccggagca
     6421 ccactcccgc cccgcccact gagcttcacc cgggcgccgc cggcggatgc ctagactggc
     6481 cgctcccgga ccggagccgc catgcccgcc atcgccacgc tgtcccgccc actgctgcca
     6541 ttggccctgc tcgccctcgc cgcctgcagc accgtggacg gcgccggccg ccgcgtcgcg
     6601 cccggcgaac cgttcgacct gacaccgggc gcgcaggcca ccctcgccga cggcggcacc
     6661 ctgcgctacg tcgcgctggt gaacgactcg cgctgcgcgc cggacgtgca gtgcatctgg
     6721 gcgggagacg ccgagatcac gatcgagtgg acgccgcgcg ccggcggcag cgagcgcttc
     6781 ggcctgcaca cgctgccggc gaactcgcgc cacgcgctcg acgcgggccg ctcgctgcgc
     6841 ctggtcgcgc tcgcgcgcgg gccc
//
LOCUS       DATIQC010000510         5916 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_456211, whole genome shotgun sequence.
ACCESSION   DATIQC010000510 DATIQC010000000
VERSION     DATIQC010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5916
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456211"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..412)
                     /locus_tag="VLM17_10940"
     CDS             complement(<1..412)
                     /locus_tag="VLM17_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016901851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR66101.1"
                     /translation="MHLPEPDFAADPSAQRRRDRARLLRAFNASLGAVLVLAAMYSAQ
                     GAFDATAWMVVPHTLPGLRGVLAAPLLHGSAAHLAANVVAVLLLGTLAGCVYPRATLR
                     ALPLLWLGAGLGAWSLGAPGTHHLGASGVTHGLGF"
     gene            657..1796
                     /locus_tag="VLM17_10945"
                     /pseudo
     CDS             657..1796
                     /locus_tag="VLM17_10945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008264547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
     gene            2163..2642
                     /locus_tag="VLM17_10950"
     CDS             2163..2642
                     /locus_tag="VLM17_10950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HSR66102.1"
                     /translation="MFDVILHQPEIPPNTGNVIRLCANTGARLHLVQPLGFSLEDRQL
                     RRAGLDYHEYATMRVHPGLDEALAAIAADTGAPPRVFALSTRGTVRYDSPRYAAGDVF
                     LFGAETRGLPGEVLAAIPPAQRLRLPMRPDNRSLNLSNAVAVVVYEAWRQLGFDGGR"
     gene            complement(2663..3700)
                     /locus_tag="VLM17_10955"
     CDS             complement(2663..3700)
                     /locus_tag="VLM17_10955"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009331 - glycerol-3-phosphate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0046167 - glycerol-3-phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HSR66103.1"
                     /translation="MSAGHAVDAPVAVLGAGSWGTALAALIARHGHRVVLWGRDAATR
                     DAINARHENERYLPGTTLPDGMRATTDLAEAMRDARLVLVVVPSHAFADTLRALAPLR
                     PAGAGVAWATKGFEPGSGRFLHEVAGDVLGPGVPLAVVTGPSFAREVAAGLPTALTVH
                     GDDEAFTRDVAELLHGPAFRAYTGDDMRGAELGGAMKNVLAVATGVADGMGLGLNARA
                     GLITRGLNEMLRLNAAIGGRPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGHGQSLQ
                     DAVREIGQVVESVQTADEVMRLAERHGVELPIAHNVRAVLHGDITPAEGLQRLLAREQ
                     KAEYPQALFPG"
     gene            complement(3706..4203)
                     /gene="secB"
                     /locus_tag="VLM17_10960"
     CDS             complement(3706..4203)
                     /gene="secB"
                     /locus_tag="VLM17_10960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014501523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HSR66104.1"
                     /translation="MSDDTLNGAEQAAGPAFTVEKVYVKDVSFEAPGTPQVFNEPGQP
                     QLQMNLNQRVQRLNESAFEVVLGVTLTCNIEDKTAYLAEVQQAGVFGLAGFDDQTLDA
                     MLGTHCPNVLYPYARQAISDLISAGGFPPFLLQPINFDALYAEGLRQRAQQGGLADTE
                     AVGNA"
     gene            complement(4303..4740)
                     /locus_tag="VLM17_10965"
     CDS             complement(4303..4740)
                     /locus_tag="VLM17_10965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HSR66105.1"
                     /translation="MTFPELQAFVGNHPYLALAFAGLTLAILGNEVTSLFTGYKRIAP
                     AGLTALVNRDNALVVDLRALADFEKGHIPGSKNVLPSQFDPENKQLAAARALPVVLVC
                     KAGNSAGDAARRLKKAGFEHVYVLDGGIQAWQQADLPLARGRA"
     gene            complement(4823..5233)
                     /locus_tag="VLM17_10970"
     CDS             complement(4823..5233)
                     /locus_tag="VLM17_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003480155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66106.1"
                     /translation="MRLIKTWLPLLAAVLLLAGCATKLDRNNALQEAQYAWSAAIRWG
                     DFEGAFNMLDPKLRAEHPVTDLEFARYKQVQISEYRDLGAQVRDGTAVRVVMINVVNR
                     NTLVERQVRYTEAWRYDPASKTWWVTSGLPDLWQ"
     gene            complement(5265..5735)
                     /locus_tag="VLM17_10975"
     CDS             complement(5265..5735)
                     /locus_tag="VLM17_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiD C-terminal domain-containing protein"
                     /protein_id="HSR66107.1"
                     /translation="MPRADAFADALAVLDAHYQAMPPVAAMGLAIGGFDGTRLRLHAP
                     LARHVNDKGCAFGGSLASLMTLAGWGLVALRLHEDGIEAEVFVADSEVRYLKPLFADL
                     AAEAELAADVDWNDVLADLRGRGRARIGLVARVRLPDGGVAAEARAGFVAIAKG"
BASE COUNT          826 a         2059 c         2207 g          824 t
ORIGIN      
        1 ggaagccgag cccgtgggtc acgccgctcg cgccgaggtg gtgggttccc ggcgcaccca
       61 gcgaccatgc cccgaggccc gcgccgagcc acagcagcgg cagtgcgcgc agcgtcgcgc
      121 gcgggtacac gcagccggcg agcgtaccca gcagcagcac ggcgacgacg ttcgcggcga
      181 ggtgcgccgc cgagccgtgc agcagcggcg ccgccagcac gccgcgcagg cccggcaacg
      241 tgtgcggcac caccatccac gccgttgcgt cgaacgcgcc ctgcgcgctg tacatcgcgg
      301 cgagcaccag caccgcgccg aggctggcgt tgaacgcgcg cagcaggcgc gcacggtcgc
      361 gccggcgctg cgcggaagga tcggcggcga agtcgggttc gggcaggtgc atggctggac
      421 gatggcgccg cgggaccggg aaacaagggc cggcagcggt ttcgacgcgg gccggatcac
      481 ggcgcgcgcg ccggtggcac ggtgtgttgc acgccgggcc tggttgggtc ggcgtggcgc
      541 gcgctcacgg cgtgcgctcg acggttcggg cagggctggc cttgcgcccg gacaccagcc
      601 gcggacacgc gcgcgactag aatgtgcgga tgaacgaaac gcccaccgtc cactagaaga
      661 acgcctggaa gtcgacccat ccgtggatct tccagaagct ggtcgacaag ccggtccagc
      721 gccccaagcc cggcagcatc gtcgaggtgg tcggcgtgga cggggaatgg atcggccgcg
      781 gcttctacaa cggccactcg cgcatcgcat tgcgcatgct cgagaccgac cccgacgtgc
      841 ccgtggatgc gcagtggttc gcgcgccgca tcgccggcgc ggtggcgctg cgccgcgacg
      901 tgctgcggct ggacgaggtg agcgatgcct ggcgcgtcgt gcacagcgaa ggcgacggcc
      961 tcagcggcct ggtcgtcgat cgctacgccg acctgctggt ggtcgagttc ttcagcgccg
     1021 gcatgttccg ccaccgcgag tggatctacg acgcattgcg cgcgcaattt ccgggctgcc
     1081 gcttccatgc cttcgccgac gagcacgtgc agaagcagga atcgttcgat ttccgcggca
     1141 gcgagccggc ggcgccggcg atcatcgtcg agcacggcat ccggttccgg gccgatcccg
     1201 ccggcgcgca caagaccggc tttttcgccg accagcgcga gaaccggcag tggctgtcgc
     1261 agctggtcgc cggcaagcgc gtgctcgacc tgtgctgcaa caccggcggc ttcgccgtgt
     1321 acgcggcggt gcgcggcgcg gacgaggtgg tcggcatcga catcgatggc gacgtcatcg
     1381 agatcgcgaa gggcaacgcc aggctcaaca acgtgcgccc gcgcttcgtg caggccgacc
     1441 tgttcccgtg gctgcgcgac gcgggggcga gcggcgaacg gttcgacgtg gtgatcctcg
     1501 atcccgcgaa gatgacgcgc gaccgcgagc aggtcattcc cgcgctgaag aaatacctcg
     1561 acatgaacaa gctcgcgctg ggcgtggtga agccgggcgg gctgttcgcg acgttctcgt
     1621 gcaccggcct cgtgagcgag gaccagttcc tcgacatgct gcggcgcgcg gccttctacg
     1681 ccgggcgcac ggtgcaggtg ctgaagatcg ccggcgccgg cgccgaccat ccgttcctcg
     1741 cccaggcgcc ggagtcacgc tatctcaagg cggtgttctg ccgggtcctg gactgaccgc
     1801 ggacacgctt ccgccacggc cggccggggg gcggcaggtc gtggcgttgc gttgcggggg
     1861 gaccggtccg gaaccatgca cgggccgcgc aggacaatgc cgacgtccct gtcggcgagg
     1921 ccattgaacg caaacttcac ccggaccgga agcccgtggc ggctgcgacc tgggtgacga
     1981 tcggtagcgg cttgggggcg gccgccagca acggcgcgga ctcgttgacg catcagccac
     2041 cggaagcgca ctttttgagg tgaatatcgg tcgcgcggtg aacacgaggc gcgtgcaccg
     2101 cggccggagc gttttccggc cgcgcggtcg cgggccacgc ggtgatcccc gatcatggcc
     2161 ggatgttcga cgtcatcctg caccagcccg aaatcccgcc gaacaccggc aacgtcatcc
     2221 gcctgtgcgc gaacaccggc gcgcggctgc acctcgtcca gccgctcggc ttttcgctgg
     2281 aggaccgcca gctgcgccgc gcggggctcg attaccacga gtacgcgacg atgcgggtgc
     2341 accccgggct ggatgaagcg ctggcggcca tcgccgcgga cacgggcgcg ccaccgcggg
     2401 tgttcgcgct gagcacgcgc ggcacggtgc gctacgacag cccccgctac gcggcgggcg
     2461 acgtgttcct gttcggcgcg gaaacccgcg gcctgccggg cgaagtgctg gcggcgattc
     2521 cgccggcgca gcgcctgcgg ctgccgatgc ggccggacaa ccgcagcctc aacctgtcga
     2581 atgcggtggc ggtggtggtg tatgaagcgt ggcggcagct cggcttcgac ggcggccgct
     2641 agcgtgacgg gcggcgccgc gctcagccgg ggaacagcgc ctgtggatac tcggccttct
     2701 gttcgcgcgc gagcagtcgc tgcagccctt cggcgggggt gatgtcgccg tgcaggacgg
     2761 cacgcacgtt gtgcgcgatc ggcaactcga cgccgtggcg ctcggccagg cgcatcactt
     2821 cgtcggcggt ctgcaccgat tcgaccacct ggccgatctc gcgcaccgcg tcctgcagcg
     2881 actggccgtg gcccagcgca aggcccaggc ggcggttgcg cgacaggtcg ccggtgcagg
     2941 tcagcaccag gtcgccgagg ccggcgaggc ccatcagcgt ttccgggcga ccgccgatcg
     3001 cggcattgag ccgcagcatc tcgttgaggc cgcgggtgat caggccggcg cgcgcgttga
     3061 ggccgaggcc catgccatcg gcgacgccgg tggcgaccgc gagcacgttc ttcatcgcgc
     3121 cgccgagctc ggcgccgcgc atgtcgtcgc cggtgtaggc gcggaacgcc gggccgtgca
     3181 gcagttcggc gacgtcccgg gtgaacgctt cgtcgtcgcc gtgcacggtc agcgcggtcg
     3241 gcaggccggc ggcgacctcg cgcgcgaacg acggcccggt caccaccgcc agcggcacgc
     3301 cggggccgag cacgtcgccc gcgacctcat gcaggaagcg tccgctaccg ggctcgaagc
     3361 ccttggtcgc ccacgccacg ccggcaccgg cgggccgcag cggcgcgagc gcccgcaggg
     3421 tgtcggcgaa cgcgtgcgaa ggcaccacga cgaggaccag gcgcgcgtcg cgcatcgcct
     3481 cggccaggtc ggtggtcgcg cgcatgccgt ccggcaacgt ggtgccgggc aggtagcgct
     3541 cgttttcgtg gcgcgcgttg atcgcgtctc gggtggcggc gtcgcgtccc cacagcacga
     3601 cgcggtggcc gtggcgggcg atcagggctg cgagcgcggt gccccacgag cccgcgccga
     3661 gcacggcgac gggcgcgtcc acggcatggc cggcggacat gggactcagg cgttgccgac
     3721 ggcttccgtg tcggccaggc cgccctgctg ggcgcgctgg cgcaggccct cggcgtacag
     3781 cgcgtcgaag ttgatcggct gcagcaggaa cggcgggaag cccccggccg agatcaggtc
     3841 gctgatcgcc tggcgcgcgt agggatacag cacgttcggg cagtgcgtgc cgagcatcgc
     3901 gtcgagggtc tggtcgtcga agccggcgag gccgaacacg ccggcctgct gcacttcggc
     3961 gaggtaggcg gtcttgtcct cgatgttgca ggtcagggtc acgcccagca ccacctcgaa
     4021 cgcggattcg ttgagacgct gcacgcgctg gttgaggttc atctgcagct gcggctggcc
     4081 cggctcgttg aacacctgcg gcgtgcccgg cgcctcgaac gacacgtcct tgacgtagac
     4141 cttctcgacg gtgaaggcgg ggccggcggc ctgttcggcg ccgttgaggg tgtcgtcgga
     4201 catggcgttg ctccggaaag cgcaaagaag ggggattatg gcacggcccc gcgggccgcc
     4261 cgaccgttca ggtgcggtcg ccggggcgcg cctgcaaggg cctcaggcgc ggccgcgcgc
     4321 gagcggcagg tcggcctgct gccaggcctg gatgccgccg tcgagcacgt acacgtgctc
     4381 gaaaccggcc ttcttcagtc gcctggcggc atcgccggcg ctgttgccgg ccttgcacac
     4441 cagcaccacc ggcagcgcgc gcgcggcggc gagctgcttg ttctcggggt cgaactggct
     4501 cggcaggacg ttcttcgagc cggggatgtg gcccttctcg aaatcggcca gcgcgcgcag
     4561 gtcgaccacc agcgcgttgt cgcggttgac cagcgcggtc agcccggccg gcgcgatgcg
     4621 cttgtagccg gtgaacaggc tggtgacctc gttgccgagg atggccaggg tcaggccggc
     4681 gaaggccagc gccaggtagg ggtggttgcc gacgaaggcc tgcagttcgg gaaaggtcac
     4741 gacgggggtc tgcgaacgcg cggcgacgcc ggcgcggaag cgggattgtc gccgctcgcg
     4801 ccggacgagg caaagccgcg cgttactgcc agaggtccgg caggccgctg gtgacccacc
     4861 aggtcttgct cgccgggtcg tagcgccagg cctcggtgta gcgcacctgg cgctcgacca
     4921 gggtgttgcg gttgaccacg ttgatcatca cgacgcgcac cgcggtgccg tcgcgcacct
     4981 gcgcgccgag gtcgcggtac tcggagatct gcacctgctt gtagcgcgcg aactcgaggt
     5041 cggtgaccgg atgctcggcg cgcagcttcg ggtcgagcat gttgaacgcg ccctcgaagt
     5101 cgccccagcg gatcgccgcc gaccacgcgt actgcgcctc ctgcagcgca ttgttgcggt
     5161 ccagcttggt cgcgcagccg gccagcagca gcaccgccgc cagcaacggc agccacgtct
     5221 tgatcaggcg cattcgcact ctccccggga tggtcgatcg catcctaccc cttggcgatc
     5281 gcgacgaagc cggcgcgcgc ctccgcggcg acgccgccgt cgggcaggcg cacccgcgcg
     5341 accagtccga tgcgcgcgcg gccgcggccg cgcaggtccg ccagcacgtc gttccagtcg
     5401 acgtccgcgg ccagctcggc ctcggcggcg aggtcggcga acagcggctt gaggtagcgc
     5461 acctcgctgt cggcgacgaa cacctcggct tcgatgccgt cctcgtgcag gcgcaacgcg
     5521 accagccccc agccggccag cgtcatcagc gacgccaggc tgcccccgaa cgcgcagccc
     5581 ttgtcgttga cgtggcgcgc cagcggcgcg tgcaggcgca ggcgggtgcc gtcgaagccg
     5641 ccgatggcga ggcccatggc cgcgaccggc ggcatcgcct ggtaatgcgc gtcgagcacg
     5701 gcgagggcgt cggcgaaggc gtcggcgcgg ggcattggct atcctgcggg catgtcgcga
     5761 gcgagcgccg gatgctacgt catctccctg cgtccggtcg gcgggcacgg cgccgtgcgc
     5821 cgcgctgccg cggcgcgcgg gctgcgcacg atcgcgctgt cgccgtggcg gatcgcggtg
     5881 cgcgaggacg acgacacccg ccgcgccgtg cgcgac
//
LOCUS       DATIQC010000511         2109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_703979, whole genome shotgun sequence.
ACCESSION   DATIQC010000511 DATIQC010000000
VERSION     DATIQC010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_703979"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..728
                     /locus_tag="VLM17_10980"
     CDS             <1..728
                     /locus_tag="VLM17_10980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2066 domain-containing protein"
                     /protein_id="HSR66108.1"
                     /translation="VRFDQDKVDTLVGALGLPVWAEPRPKPVLWLAIDDGRGPRLVGL
                     AQAGAARSVLDRAKARGFKLGLPSGSAAEQAAVGAIWRGDASVISRLSARYNPPMQLI
                     GKLYRNAGGWTADWTFVDNGRVLDQWSSTDVDARRAMAAGAEGAADALFARYAKAPPS
                     GPPGVVRVVFTGLHGSDDYLRLSGYLQGLAVVRGFAPVKATPDTLEADLDLVSGLEGF
                     RRLLDRDVLEDAGAVGTPTFQLH"
     gene            737..1876
                     /locus_tag="VLM17_10985"
     CDS             737..1876
                     /locus_tag="VLM17_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017909199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HSR66109.1"
                     /translation="MSDRPEFAVATFLHRLQWGLLALAVGWLLWLLAPVLTPFALAAL
                     LGWLGDPLVDRLERRLARNTAVMIVFGVMAAVALLALLALVPLLQRQVVTLVASLPHY
                     RDWITGTALPWLQARTGLQLTQWLDPQRLIEVVRQHWEAAGGAAATLLGYLSRSGFAL
                     LGWIANLVLLPVLTFFFLRDWDLFVERVAALVPRDHAAIAGQLARESSEVLGAFLRGQ
                     LLVMLILGVLYGAGLWAIGLDLGILIGLVAGVLTFVPYLGPATVIVLGGLAALAQYGD
                     WQHLVGVALVFGTGQAVESYWLTPKLVGGRIGLHPVAVIFAVLAGGQLFGFLGMLLAL
                     PVAAVANVLLRYAHGRYTHSRLYAGERPGILLDDRVDIPGPDAGA"
     gene            1873..>2109
                     /locus_tag="VLM17_10990"
     CDS             1873..>2109
                     /locus_tag="VLM17_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR66110.1"
                     /translation="MNTGTGGQLPLALRHSPDQRLDTFVDAPAGVLQHLRALATQPAA
                     DGLYLAGPGGVGKTHLALAACAAAHAAGRRAAYLP"
BASE COUNT          220 a          786 c          784 g          319 t
ORIGIN      
        1 tggtccgctt cgaccaggac aaggtcgata ccctggtcgg cgccctcggc ctgcccgtgt
       61 gggccgaacc gcggcccaag ccggtgctgt ggctggcgat cgacgacggc cgcggcccgc
      121 ggctggtcgg actcgcccag gcgggggccg cgcgctcggt gctcgaccgc gccaaggcgc
      181 gtggcttcaa gctcggcctg ccttccggca gcgccgccga gcaggcggcg gtcggcgcga
      241 tctggcgcgg cgacgccagc gtcatctcgc ggctgtcggc gcgctacaac ccgccgatgc
      301 agctgatcgg caagctgtac cgcaatgccg gcggctggac cgccgactgg accttcgtcg
      361 acaacggccg cgtcctcgac cagtggagca gcaccgacgt ggacgcgcgc cgggcgatgg
      421 cggcgggcgc cgagggcgcg gcggacgcgc tgttcgcgcg ctacgccaag gcgccgccgt
      481 ccggcccgcc gggcgtggtg cgggtggtgt tcaccggcct gcacggcagc gacgactacc
      541 tgcgcctgtc cggttacctg cagggcctgg cggtggtgcg cggcttcgcg ccggtgaagg
      601 cgacgcccga cacgctcgag gccgacctcg acctggtcag cggcctcgaa ggcttccgac
      661 gcctgctcga ccgcgacgtc ctcgaggacg ccggcgcggt gggaacgccg accttccagc
      721 tgcactgagg cgcgccttga gcgaccgtcc cgagttcgcc gtggccacct tcctgcaccg
      781 cctgcagtgg ggcctgctcg cgctcgccgt gggttggctg ctgtggctgc tggcgccggt
      841 gctgacgccg ttcgcgctgg ccgcactgct cggctggctg ggcgatccgc tggtcgaccg
      901 cctggagcgg cggctggcgc gcaacaccgc ggtgatgatc gtgttcggcg tgatggcggc
      961 ggtggccctg ctcgcgctgc tcgcgctggt gccgctgctg cagcggcagg tggtgacgct
     1021 ggtggcgtcg ctgccgcact accgcgactg gatcaccggc accgcgctgc cctggttgca
     1081 ggccaggaca gggctgcagc tcacccaatg gctcgacccg cagcggctga tcgaggtcgt
     1141 gcgccagcac tgggaagcgg cggggggcgc ggcggcgacc ctgctcggct acctgtcgcg
     1201 ctcgggcttc gccctgctcg gctggatcgc caacctcgtg ctgctgccgg tgctgacctt
     1261 cttcttcctg cgcgactggg acctgttcgt cgagcgcgtg gccgcgctcg tgccgcgcga
     1321 ccacgccgcg atcgccggcc agctcgcgcg cgagtcgagc gaggtgctgg gcgcgttcct
     1381 gcgcggccag ttgctggtga tgctgatcct cggcgtgctg tacggcgccg ggctgtgggc
     1441 gatcggcctc gacctcggca tcctgatcgg cctggtcgcc ggcgtgctga ccttcgtgcc
     1501 ctacctcggg cccgccacgg tgatcgtgct cggcggcctg gccgcgctcg cgcagtacgg
     1561 cgactggcag cacctggtcg gcgtggcgct ggtgttcggc acgggccagg cggtggagag
     1621 ctactggctg acgcccaagc tggtcggcgg ccgcatcggc ctgcacccgg tcgccgtcat
     1681 cttcgcggtg ctcgccggtg gccagctgtt cggcttcctc ggcatgctgc tggcgctgcc
     1741 ggtggcggcg gtggccaacg tgctgctgcg ctacgcgcac ggacgctaca cgcacagccg
     1801 cctgtacgcg ggcgagcgcc ccggcatcct gctcgacgac cgcgtcgaca tcccgggacc
     1861 ggacgccggc gcatgaacac cggcaccggc gggcagctcc cgctggcgct gcggcattcg
     1921 cccgaccagc gcctggacac cttcgtcgac gcacccgcgg gcgtgctgca acacctgcgc
     1981 gcgcttgcga cccagccggc cgccgacggg ctgtacctcg ccggccccgg cggcgtcggc
     2041 aagacccacc tcgcgctcgc cgcgtgcgcc gcggcccacg cggccgggcg ccgcgccgcc
     2101 tacctgccg
//
LOCUS       DATIQC010000512         2047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_244320, whole genome shotgun sequence.
ACCESSION   DATIQC010000512 DATIQC010000000
VERSION     DATIQC010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244320"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..1675)
                     /locus_tag="VLM17_10995"
     CDS             complement(65..1675)
                     /locus_tag="VLM17_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007509765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR66111.1"
                     /translation="MKANGLSFHHPVAFWLGCAAVVAGVFAHAPMFWMGRMTHWQMVG
                     MPMDGMMLGGMALIVAGVLLATYGLMPRLAQMRQTLHGDANHLHFHVADGVPLNRAHW
                     TLVAVLAVALVIDVMKPATLGFVVPGMSAEYAITKPTASLLALVALIGTTVGSVVWGW
                     MADAFGRRAGILLSALMFIGTAICGAMPQFGWNLAMCFLMGASAGGMLPIAFTLMAET
                     VPAAHRGWLLVALGGIGTSAGYLAAAGAAAVLEPMFSWRALWLLNLPTGVVILILNRF
                     IPESPRFLSNAGLETQARAVLRKFAGRNAVETDDAQHPGAPVLDAPPPPATLRALLHG
                     RHARISWGLLVCGLAWGLANFGFVLWLPVNLAQLGVDAHAASALLARSAVCALPGIGA
                     VVWLYHRWSSVRSLVLFIALTTLALLAFAAMDLAGLRSQPLTIACTAALLVSVSGVIA
                     MLIPYAAEIYPVHLRGTGSGVIAASSKFGGILGAGFGVLGLLGHFAGSALVIAVPMAL
                     SGVMLWRNGIETRGQRLEEIQARLATSD"
BASE COUNT          312 a          762 c          741 g          232 t
ORIGIN      
        1 ggcgcgcgct gcgggtgaac gacatggcac ggcccgcgcc acgcgggccg tgccgcacct
       61 gccctcagtc cgacgtggcc aggcgcgcct ggatctcctc gagccgctgg ccgcgcgtct
      121 cgatgccgtt gcgccacagc atcacgcccg acagcgccat cggcaccgcg atcaccagcg
      181 ccgaccccgc gaaatggccg agcagtccga gcacgccgaa accggcgccc aggatgccgc
      241 cgaacttgga actggccgcg atcacgcccg agccggtgcc gcgcaggtgc accgggtaga
      301 tttccgccgc gtacggaatc agcatcgcga tcaccccgct cacgctcacc agcagcgccg
      361 ccgtgcaggc gatggtgagc ggctgcgagc gcaggcccgc caggtccatc gccgcgaacg
      421 cgagcagcgc cagcgtggtc agcgcgatga acagcaccag cgagcgcacg ctgctccagc
      481 ggtggtacag ccacaccacc gcgccgatcc cgggcagcgc gcataccgcc gagcgcgcga
      541 gcagcgcgct cgcggcgtgc gcgtcgaccc cgagctgcgc caggttcacc ggcagccaca
      601 gcacgaagcc gaagttggcc agtccccacg ccagcccgca caccagcagg ccccagctga
      661 tgcgcgcatg ccggccgtgc aggagcgccc gcagcgtcgc cggcggcggc ggcgcgtcca
      721 gcaccggcgc gcccggatgc tgcgcgtcgt cggtctccac cgcgttgcgg ccggcgaact
      781 tgcgcagcac cgcgcgcgcc tgcgtttcca gtcccgcatt cgagaggaag cgcggcgact
      841 cggggatgaa gcggttgagg atgaggatga ccacgccggt cggcaggttc agcagccaca
      901 gcgcgcgcca gctgaacatc ggctcgagca ccgccgccgc gcccgccgcg gcgagatagc
      961 cggccgaggt gccgatgccg ccgagcgcga ccagcagcca gccgcggtgc gcggccggca
     1021 cggtttccgc catcagggtg aacgcgatcg gcagcatgcc gccggccgag gcgcccatca
     1081 ggaagcacat cgcgaggttc cagccgaact gcggcatcgc cccgcagatc gcggtgccga
     1141 tgaacatcag cgccgacaga aggatgcccg cgcgccggcc gaacgcatcg gccatccagc
     1201 cccagaccac cgagccgacg gtggtgccga tcagcgcgac cagcgcgagc aggctcgcgg
     1261 tgggcttggt gatcgcgtat tcggcgctca tgccggggac gacgaagccg agcgtggccg
     1321 gcttcatcac gtcgatgacc agcgcgaccg cgagcaccgc caccagggtc cagtgcgcgc
     1381 ggttgagcgg cacgccgtcg gcgacgtgga agtgcaggtg gttggcgtcg ccgtgcaggg
     1441 tctgccgcat ctgcgcgagg cgcggcatca ggccgtaggt cgccagcagc acgccggcga
     1501 cgatcagggc catgccgccg agcatcatcc cgtccatcgg catgcccacc atctgccagt
     1561 gggtcatgcg ccccatccag aacatgggcg cgtgcgcgaa cacgccggca accacggcgg
     1621 cgcagccgag ccagaacgcg acggggtggt ggaaggacaa gccgttggct ttcatgcgcg
     1681 gactcgggtg ttgcctgcgt ccgcgtcgtg cgctgcaagc ggtgcgggcg aggatacggg
     1741 ctgcgcgcgg cagcgggaag cgcgcgctgc gcgggcgcgg cgtcgcggcg accttgccca
     1801 tcgtgcgctg gcatgcggcc cgcgctgaca ccggggccac gcgcggggcg gcaaggtggc
     1861 gggcctgccc cttcgggacg ccgccccatg cctgccaccc gttcgccgga gtcgcgctga
     1921 tggccgcggc gccgctgtcg ccggtgctgg ccgcgctgat cgccggctcg gtggcggccg
     1981 ccgcgaccgc ggtcggcacg ctgccggcgc tgttcgcgcg gcggctggag cagcacgtgc
     2041 aggacac
//
LOCUS       DATIQC010000513         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_244417, whole genome shotgun sequence.
ACCESSION   DATIQC010000513 DATIQC010000000
VERSION     DATIQC010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244417"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..>1585
                     /locus_tag="VLM17_11000"
     CDS             164..>1585
                     /locus_tag="VLM17_11000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010366902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR66112.1"
                     /translation="MDESSPSPNFTDLGLPEPLLRALADVGYESPSPIQAATIPPLLG
                     GRDVLGQAQTGTGKTAAFALPILARIDATQHAPQALVLAPTRELAIQVAEAFQKYAHH
                     LPGFHVLPIYGGQSYYPQLQALKRGVQVVVGTPGRIIDHLDRGSLDLSQLRCLVLDEA
                     DEMLRMGFIDDVEAVLKKIPESRQVALFSATMPPPIRRIAQTYLRDPVEVSIKAPTTT
                     AANIRQRYWAVSGVHKLDALTRILEAEPFDAMIVFSRTKLGTEELAEKLNARGISAAA
                     INGDMDQKGRERTIQRLKDGQVDVLVATDVAARGLDVERITHVLNYDIPYDTESYVHR
                     IGRTGRAGRKGEAILFVTPRERGMLRAIERATRQPIEPMQLPSVEAVNEQRVARFLGR
                     IDEALEGRDLALFRDLLERYERERNVPAIEVAAALAALLQGRTPLLLEPPAARETAGW
                     TKPERARGEPPARDGERPRRERET"
BASE COUNT          243 a          586 c          560 g          196 t
ORIGIN      
        1 catgccgcga tgctaccggg cgcggccgga cggggccgcg aggacgccac gcggacgccg
       61 cgcggcccgc agcgtgaacc ggcgtgtcgt gaacccgcgt ggacgcgcgg cgcgtagaat
      121 ctgcgccccg tcggagttac cggcgcttcc ccaccgcgcc gccatggacg agtcctcgcc
      181 ttccccgaac ttcaccgatc tcggcctccc ggagccgctg ctgcgggccc tggccgacgt
      241 cggctacgag tcgccctcgc cgatccaggc ggcgaccatc ccgccgctgc tcgggggccg
      301 cgacgtgctc ggccaggcgc agaccggcac cggcaagacc gccgctttcg cgctgccgat
      361 cctcgcccgc atcgacgcca cccaacacgc cccgcaggcg ctggtgctgg cgccgacgcg
      421 cgagctggcg atccaggtgg cggaagcgtt ccagaaatac gcgcaccacc tgccgggctt
      481 ccacgtgctg ccgatctacg gggggcagag ctattacccg cagctgcagg cgctcaagcg
      541 cggcgtgcag gtcgtggtcg gcacgcccgg gcgcatcatc gaccatctgg accgcggctc
      601 gctcgacctg tcgcagctgc gctgcctcgt tctcgacgaa gccgacgaga tgctgcgcat
      661 gggcttcatc gacgacgtcg aggcggtgct gaagaagatc ccggagtcgc gccaggtcgc
      721 gctgttctcg gcgaccatgc cgccgccgat ccggcgcatc gcgcagacct acctgcgcga
      781 cccggtcgag gtgtcgatca aggcgcccac cacgaccgcc gccaacatcc gccagcgcta
      841 ctgggcggtg agcggcgtgc acaagctcga cgcactgacc cgcatcctcg aggccgagcc
      901 tttcgacgcg atgatcgtgt tctcgcgcac caagctcggc accgaggagc tcgccgagaa
      961 actcaacgca cgcgggatct ccgcggcggc gatcaacggc gacatggacc agaagggccg
     1021 cgagcgcacg atccagcggc tgaaggatgg ccaggtcgac gtgctggtgg ccaccgacgt
     1081 cgcggcgcgc gggctggacg tcgagcgcat cacccacgtg ctcaactacg acatccccta
     1141 cgacaccgag agctacgtgc accgcatcgg tcgcaccggc cgcgcgggtc ggaagggcga
     1201 ggcgatcctg ttcgtcaccc cgcgcgagcg cggcatgctg cgtgcgatcg agcgcgcgac
     1261 gcgccagccg atcgaaccga tgcagctgcc gagcgtggag gcggtcaacg aacagcgggt
     1321 ggcgcgtttc ctcggccgca tcgacgaggc cctggagggc cgcgacctcg cgctgttccg
     1381 tgacctgctg gaacgctacg agcgcgagcg caacgtgcct gcgatcgagg tcgcggcggc
     1441 gctggcggcg ctgctgcagg ggcgcacgcc gctgctgctg gagccgccgg cggcgcgcga
     1501 gacggccggc tggacgaagc cggagcgcgc gcgcggcgaa cccccggcgc gcgacggcga
     1561 gcggccgcgc cgggaacgcg agacg
//
LOCUS       DATIQC010000514         2945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_563097, whole genome shotgun sequence.
ACCESSION   DATIQC010000514 DATIQC010000000
VERSION     DATIQC010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_563097"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1441
                     /locus_tag="VLM17_11005"
     CDS             <1..1441
                     /locus_tag="VLM17_11005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HSR66113.1"
                     /translation="FDALRRAHRVAAVARTAAPKDADVLAYLARVDVADHAWDLNRGA
                     DRDLLAGRLGESGGGALAKLREVLQVRPGQARALQGLAAVESALIRRAETAASRGDFK
                     AANGWLGLADKVRPGSDTVPDARARLEAMRESHVGDLRDAGLRALQARDGIPLARARL
                     DELLRIARPGDPAAAELRQRIDLATYYGLFRPGQAFTDALGVAARGPEMVVVPHGAFR
                     MGAEEGDGEDSERPAHNIRFDRGFAISRTEVTVGQFRQFVQATGYEPTATHRGFSLAY
                     DELGGNFVRRSRVGWDSAYDGRRAGDDLPVVHVSARDADAYVKWLGERSGQRYHLPSE
                     AQFEYALRAGGRSLYPWGDGAPPKGAGNLTGARDRSPSGRQWNNAFAGYGDGYWGPAP
                     AGSFAPNAFGLHDMAGNVSEWVADCWHDGYRRAPTDGDAWVNPGCRTRVVRGGAWASA
                     PEQTRSAWRAPAGVDTTNARIGFRVVRDL"
     gene            1469..2368
                     /locus_tag="VLM17_11010"
     CDS             1469..2368
                     /locus_tag="VLM17_11010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HSR66114.1"
                     /translation="MRQDPFGNTSRVGFGGLRLWVLLLFAGYAAFYWFSNRSTDALTG
                     EKVVIDKSISPEDEKALGLQAYQQVLTEQPPLPKDAQVSRQVGEIAQRLIAKVPEVED
                     ALAAEHGLQAPHVERDFDWDVNVIPSDEVNAFCLPGGKIAVYTGLVPIAQNADAMAVV
                     LGHEISHALLRHGAQRMTQQKLEQMGQMAGAMGGLSQGQLQTVMAVYGYGHQLPYARK
                     QEVQADEMGLMLAAAACFDPHEAIPLWERMDGASGGNAPPEFASDHPSSGSRIQDLQS
                     LMPKAEQYRQRFCEAAGGTSATR"
     gene            2381..>2945
                     /locus_tag="VLM17_11015"
     CDS             2381..>2945
                     /locus_tag="VLM17_11015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR66115.1"
                     /translation="MQRTARVAIPRTIWALGFVSLFMDMSSELVHSLLPVLLASGLGA
                     SALAIGLIEGAAEGLVMVTKVFSGYISDAFGKRKPLVLFGYGLAAACKPLFPLAATVE
                     AVAFARLLDRFGKGIRGAPRDALVGELAPPAIRGACFGLRQSMDTIGAVLGPLLAMLG
                     LWLLAGNLRAVLWISVVPAVLCVLLIVF"
BASE COUNT          403 a         1026 c         1095 g          421 t
ORIGIN      
        1 cttcgatgcg ctgcggcgcg cgcatcgcgt cgccgcggtg gcgcggaccg ccgcgccgaa
       61 ggatgccgac gtgctggcct acctggcgcg cgtcgatgtc gcggaccatg catgggacct
      121 caaccgtggc gccgaccggg acctgctcgc cggcaggctc ggtgaatcgg gcggcggtgc
      181 gctcgccaag ctgcgcgagg tgctgcaggt gcgccccggc caggcgcgcg ccctgcaggg
      241 cctggcggcg gtggagagcg cgctgatccg gcgcgcggag acggccgcgt cgcgcggcga
      301 cttcaaggcg gccaacgggt ggctcgggct cgccgacaag gtgcgccccg gcagcgacac
      361 cgtgccggat gcgcgcgccc ggctggaggc gatgcgcgag tcgcacgtcg gcgacctgcg
      421 cgacgccggg ttgcgcgcgc tgcaggcgcg cgacggcatc ccgctggcgc gggcgcggct
      481 ggacgaactg ctgcgcattg cccggcccgg cgatccggcc gcggccgaac tgcgccagcg
      541 catcgacctt gccacctact acggcctgtt ccgccccggg caggcgttca ccgacgcact
      601 gggcgtcgcc gcgcgcggcc cggagatggt ggtggtgccg cacggcgcgt tccgcatggg
      661 cgccgaagaa ggcgatggcg aggacagcga gcggcccgcg cacaacatcc gcttcgaccg
      721 cggcttcgcg atctcgcgca ccgaggtcac cgtcggccag ttccgccagt tcgtccaggc
      781 gacgggatac gagccgaccg cgacccatcg cggtttctcg ctcgcctacg acgagctcgg
      841 cggcaacttc gtccgccgca gccgggtggg ctgggacagc gcctacgacg gccgtcgtgc
      901 cggcgacgac ctgccggtgg tgcacgtcag cgcgcgcgat gccgatgcct acgtgaaatg
      961 gctgggcgaa cgcagcggcc agcgctacca cctgccgagc gaggcgcagt tcgagtacgc
     1021 actgcgggcc ggcggccgct cgctgtatcc gtggggcgac ggtgcgccgc caaagggcgc
     1081 gggcaacctg accggcgcgc gcgaccgctc gccgtccggc cggcaatgga acaacgcctt
     1141 cgccggctat ggcgacggct actggggacc ggcgccggcg ggcagcttcg cgcccaatgc
     1201 attcggcctt cacgacatgg ccggcaatgt cagcgagtgg gtcgccgact gctggcacga
     1261 tggctatcgg cgcgcgccga ccgacggcga cgcctgggtg aatcccggtt gccgcacgcg
     1321 cgtggtgcgc ggcggtgcct gggccagcgc gccggaacag acccggtcgg catggcgcgc
     1381 gccggcgggc gtcgacacca ccaacgcgcg catcggcttc cgcgtggtgc gcgacctgta
     1441 gctggccagc ccgacctgga ggtcgcacat gcggcaggat cccttcggca acacctcgcg
     1501 cgtcggtttc ggcggactgc ggctgtgggt gttgctgctg ttcgccggct acgccgcctt
     1561 ctactggttc tccaaccgca gcaccgacgc gctcaccggc gagaaggtgg tcatcgacaa
     1621 gagcatctcg cccgaggacg agaaggcgct cggcctgcag gcctaccagc aggtgctgac
     1681 cgaacagccg ccgctcccga aggacgcgca ggtctcgcgg caggtcggcg agatcgcgca
     1741 gcgactgatc gccaaggtgc ccgaggtcga ggatgcgctc gccgcggagc acggcctgca
     1801 ggcgccgcac gtcgaacgcg acttcgactg ggacgtcaac gtcattccgt ccgacgaagt
     1861 caatgcgttc tgcctgccgg gcggcaagat cgcggtgtac accggcctcg tccccatcgc
     1921 gcagaacgcc gacgcgatgg cggtcgtgct cgggcatgag atctcgcacg cgctgctgcg
     1981 ccacggtgcg cagcgcatga cccagcagaa gctggagcag atgggccaga tggccggcgc
     2041 gatggggggc ctcagccagg gccagctgca gacggtgatg gcggtgtatg gctacggcca
     2101 ccagttgccg tacgcgcgca agcaggaggt ccaggccgac gagatgggat tgatgctggc
     2161 ggcggcggcc tgtttcgacc cgcacgaggc catcccgctg tgggagcgca tggacggcgc
     2221 cagtggcggc aatgcgccgc cggaattcgc ctccgaccat cccagttcgg gcagccgcat
     2281 ccaggacctg cagtcgctga tgcccaaggc cgagcagtac cgccagcgct tctgcgaagc
     2341 cgccggcggc acctccgcca cgcgctgacg gggcacgcgc ttgcagcgca ccgcgcgcgt
     2401 cgccatcccg cgcaccatct gggcgctggg cttcgtcagc ctgttcatgg acatgagttc
     2461 cgaactcgtg cacagcctgc tgccggtgct gctggcgagc gggctgggcg cgagtgcgct
     2521 cgcgatcggc ctgatcgaag gtgcggccga gggcctggtc atggtcacaa aggtcttctc
     2581 cggctacatc agcgacgcgt tcggaaagcg caagccgctg gtgctgttcg gctacgggct
     2641 ggcggcggcg tgcaagccgc tgttcccgct cgcggcgacg gtggaagcgg tggcgttcgc
     2701 gcgcctgctc gaccgtttcg gcaagggcat ccgcggcgcg ccgcgcgatg cgctggtcgg
     2761 cgaactcgcg cctccggcga tccgcggtgc ctgcttcggc ctgcgccagt cgatggacac
     2821 gatcggcgcg gtgctcgggc cgctgctggc gatgctcggc ctgtggttgc tggccggcaa
     2881 cctgcgcgcg gtgctgtgga tctcggtggt accggcggtg ctgtgcgtgc tgctgatcgt
     2941 gttcg
//
LOCUS       DATIQC010000515         4352 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_280518, whole genome shotgun sequence.
ACCESSION   DATIQC010000515 DATIQC010000000
VERSION     DATIQC010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280518"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..888
                     /locus_tag="VLM17_11020"
     CDS             <1..888
                     /locus_tag="VLM17_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HSR66116.1"
                     /translation="EKVALVLGAGGARGLAQIGVIEALQVRGIDVVAVAGSSSGALVG
                     GLFAAGKLGVYRDWLCGLSRKQMLRLLDPGLGGPAVFRGERLMHALRELVGEPRIEDL
                     PIDFTAVAVDLLRQREVWLRHGDLWDAVRASFAIPGIFTPHVVHGRELVDGGLLAPLP
                     ITATRLSDAHRLIAVDMHGWPQQPPGAPAVRDHPGADPEHDDGRLARWWNARFGHAHD
                     AATADDPVAHMGFTELMARSLDTMQAQIARVHLALDPPELVIRIPRDACQFYEFWRVR
                     ELVGIGRAQADKALDAAGY"
     gene            997..1308
                     /locus_tag="VLM17_11025"
     CDS             997..1308
                     /locus_tag="VLM17_11025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011260369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66117.1"
                     /translation="MHHHHADPRPDRRVDPRLDHLLRRLIACGVLAVLVLPAARGSSA
                     WLGWWPLWLVAMPLSAWCALHRFALPQRARSARAFLPRRRRGVQARRRATGRPVFARA
                     A"
     gene            1383..3530
                     /locus_tag="VLM17_11030"
     CDS             1383..3530
                     /locus_tag="VLM17_11030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HSR66118.1"
                     /translation="MPTAVRHLVLAASLVVVPALAAPREAAMTDQPTSDRYAWLEEVT
                     GDKPLAWVHQQNARTDAELADSAEFAGLQEQVEAILDSKAKIPEVEKIGDHYYNFWKD
                     AQHQRGLWRRTTLAEYRKPEPRWETVIDLDALGAAEKENWVWHGADCLRPTPPDGTYR
                     RCLVALSRGGSDADVTREFDLVDKQWVKDGFYRAEAKGGLGWIDADHVYVQTDFGPGS
                     MTSSGYPRITKAWRRGTPMSAATLVYEGKPDDLAISASRDHAPGFERDFVSRALAFYR
                     DELYLRRADGTLAKVDAPDSAIKSVHARWLALQLRDPWTVAGTTHPAGALLVADFDAF
                     MAGGRDLRVVFTPTASTSLEGFTWTKDQLVLNVLDDVKNRLSVLDPAQGWKATPFAGS
                     IGIGTLGVRAVDADESNALWLTETSYLTPTTLSLWQPGSAPEALKAMPAFFDASGSVV
                     EQHFATSQDGTRVPYFLVRPRDLAPGASAPTLLYGYGGFEVSLTPAYSGIVGKGWLER
                     GGVYAVANIRGGGEYGPRWHQAALKENRHKAYEDFAAVAQDLVARKITSRAHLGIMGG
                     SNGGLLVGNMLTQYPQLFGAVVIQVPLLDMKRYSHLLAGASWMAEYGDPDGADWNYIR
                     TFSPYQLFDPAKRYPPTFVWTTTRDDRVHPGHARKMAAEMLAADKDVRYYENTEGGHG
                     AGATNRQQAHLWALTYAFLWKALGAAGGAPAAP"
     gene            3788..4153
                     /locus_tag="VLM17_11035"
     CDS             3788..4153
                     /locus_tag="VLM17_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HSR66119.1"
                     /translation="MARPTVLLCDDSRALRMLTASQLADCGYELAGEAGDGASAIALY
                     RALRPDVVLLDLVMPEVDGRQALEQIMAFDPQARVVVLSSLGAQADIEQCLRMGARSY
                     LQKPIDPTVLRRVLAEATA"
     gene            4164..>4352
                     /locus_tag="VLM17_11040"
     CDS             4164..>4352
                     /locus_tag="VLM17_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66120.1"
                     /translation="MAAAKFFGQFLLERGAIDARQLLRALELQRASNPMLGEIAQAEG
                     LLTIAQASMVPAYYGMGWL"
BASE COUNT          597 a         1620 c         1542 g          593 t
ORIGIN      
        1 gagaaggtcg cgctggtgct cggcgccggt ggtgcgcgcg ggctcgcgca gatcggggtg
       61 atcgaggcgc tgcaggtgcg cggcatcgac gtcgtcgcgg tcgccggctc gtccagcggc
      121 gcgctggtcg gcggcctgtt cgccgccggc aagctcgggg tctaccgcga ctggctgtgc
      181 gggctcagcc gcaagcagat gctgcgcctg ctcgatcccg gcctgggcgg cccggccgtg
      241 ttccgcggcg aaaggctgat gcacgcgctg cgcgaactgg tcggcgaacc gcgcatcgag
      301 gacctgccga tcgacttcac cgcggtcgcg gtcgacctgc tgcgccagcg cgaggtgtgg
      361 ttgcgccacg gcgacctgtg ggatgcggtg cgcgcctcgt tcgcgattcc cggcatcttc
      421 accccgcatg tcgtgcatgg ccgcgaactg gtcgacggcg gcctgctcgc cccgttgccg
      481 atcaccgcca cgcggctgtc ggatgcgcac cgcctcatcg cggtcgacat gcacggctgg
      541 ccgcagcagc cgcccggcgc gcccgccgtg cgcgaccacc ccggcgcgga cccggagcac
      601 gacgacggac gcctcgcccg ctggtggaat gcgcggttcg gccatgcgca cgacgcggcg
      661 acggcggacg atccggtcgc gcacatgggc ttcaccgaac tgatggcgcg ttcgctcgac
      721 accatgcagg cgcagatcgc ccgcgtgcac ctcgcgctgg acccccccga gctggtgatc
      781 cgcatccccc gcgacgcctg ccagttctac gaattctggc gcgtgcgcga actggtcggc
      841 atcgggcgcg cacaggcgga caaggcgctg gacgcggcgg ggtactgaag ccgccggcgc
      901 ggccggtcgt cgttccttgc ccgcggcgcc gccgcaatcg caaccggtga gatcccggcc
      961 ggcgaggctg ctccgcacgc acaccggagc gccgccatgc accaccacca cgccgacccc
     1021 cgtcccgacc gccgcgtcga cccgcgcctc gaccacctgc tgcgccggct gatcgcctgc
     1081 ggcgtgctcg ccgtgctggt cctgcccgcc gcgcgcggca gcagtgcgtg gctgggctgg
     1141 tggccgttgt ggctggtggc gatgccgctg agcgcctggt gtgcgctgca ccggttcgcg
     1201 ctgccgcagc gcgcccggtc ggcgcgcgca ttcctgccgc gccgccgccg cggcgtgcag
     1261 gcccggcgtc gcgccacggg gcgtccggtg ttcgcgcgcg cggcgtgacc ggcgacaggg
     1321 gagcggtgcg aggagtgcgt gctacggtgc gcgtcccgct gtcttcctcc atcgagggtc
     1381 gcatgccgac cgccgtccgc cacctcgtcc tggccgccag cctcgtggtc gtgcccgccc
     1441 tcgccgcacc gcgcgaggcc gccatgaccg accagccgac ttccgaccgc tacgcctggc
     1501 tcgaggaggt caccggcgac aagccgctgg cgtgggtgca ccagcagaac gcgcgcaccg
     1561 acgccgagct tgccgacagc gcggagttcg cggggctgca ggaacaggtc gaggcgatcc
     1621 tcgattccaa ggccaagatc cccgaggtcg agaagatcgg cgaccactac tacaacttct
     1681 ggaaggacgc gcagcaccag cgcggcctgt ggcggcgcac cacgctggcc gaataccgca
     1741 agcccgagcc gcggtgggag acggtgatcg acctcgacgc actcggcgcc gccgagaagg
     1801 agaactgggt ctggcacggc gccgactgcc tgcggcccac gcctccggac ggcacgtacc
     1861 ggcggtgcct ggtcgcgctc tcgcgcggcg gctcggacgc cgacgtgacg cgcgagttcg
     1921 acctcgtcga caagcagtgg gtgaaggacg gcttctaccg cgccgaggcc aagggcgggc
     1981 tcggctggat cgatgccgac cacgtctacg tgcagaccga tttcggcccg ggctcgatga
     2041 ccagttccgg ctacccgcgc atcaccaagg cctggcggcg cggcacgccg atgtccgccg
     2101 cgacgctggt gtacgaaggc aagcccgacg acctcgcgat ctcggcatcc cgcgaccacg
     2161 cgccgggctt cgagcgcgac ttcgtcagcc gcgcgctcgc cttctaccgc gacgagctct
     2221 acctgcgccg cgccgacggc acgctggcga aggtcgacgc gcccgactcg gcgatcaagt
     2281 cggtgcacgc gcgctggctg gccctgcagc tgcgcgatcc gtggaccgtg gccggcacca
     2341 cccatccggc cggcgcgctg ctggtcgccg acttcgacgc gttcatggcc ggcgggcgcg
     2401 acctgcgcgt ggtgttcacg ccgaccgcca gcacttcgct cgagggcttc acctggacga
     2461 aggaccagct cgtcctcaac gtgctcgacg acgtcaagaa ccgcctgtcc gtgctcgatc
     2521 cggcgcaggg gtggaaggcg acgcccttcg ccggcagcat cggcatcggc acgctcggcg
     2581 tgcgcgcggt ggacgccgac gagagcaacg cgctgtggct gaccgaaacc agctacctca
     2641 ccccgaccac gctgtcgctg tggcagccgg gcagcgcgcc ggaagcgctc aaggcgatgc
     2701 cggcgttctt cgacgcgtcc gggagcgtcg tcgagcagca tttcgccacc tcgcaggacg
     2761 gaacgcgcgt gccgtacttc ctggtgcgcc cgagggacct cgcgcccggc gccagcgcgc
     2821 cgacgctgct gtacggctac ggcggcttcg aggtgtcgtt gacgccggcc tactccggca
     2881 tcgtcggcaa gggctggctc gagcgcggtg gcgtgtatgc ggtcgccaac atccgcgggg
     2941 gcggcgagta cggcccgcgc tggcaccagg ccgcgctgaa ggagaaccgg cacaaggcct
     3001 acgaggattt cgccgcggtc gcgcaggacc tggtcgcgcg gaagatcacc tcgcgcgcgc
     3061 acctcgggat catgggcggc agcaacggtg gcctgctggt cggcaacatg ctgacccagt
     3121 acccgcagct gttcggcgcg gtggtgatcc aggtaccgct gctggacatg aagcgctaca
     3181 gccacctgct ggccggcgcc tcgtggatgg ccgagtacgg cgaccccgac ggcgccgact
     3241 ggaactacat ccgcacgttc tcgccgtacc agctgttcga tccggcgaag cggtatccgc
     3301 cgaccttcgt gtggacgacg acgcgcgacg accgcgtgca tcccggccac gcccgcaaga
     3361 tggcggcgga gatgctcgcc gccgacaagg acgtgcgcta ctacgagaac accgaaggcg
     3421 gccacggcgc cggcgccacc aaccgccagc aggcgcacct gtgggcgctg acctacgcct
     3481 tcctgtggaa ggcgctgggc gccgccggcg gagcccccgc cgcgccctga cgcgcgagcc
     3541 gccgcccgcg ggtggcacgg agcggccgtg cgtggcgcga cgggctggcc acgcacgatt
     3601 gcggccatgc ccgcacccgc gaggccgggc gctccgcttg cctggacctg cttcgccgcc
     3661 ccctgcgtcc gtccggaatc gtcccggcga ctcgagcagg agggcctccg ccggccgccc
     3721 tcaagcccgc caccgccgtg ccgatagttc cttcgacgaa gcggcgacgc gccgcggggg
     3781 atccgtcatg gcccgaccca ccgtgctgct gtgcgacgac tcgcgcgcgc tgcgcatgct
     3841 cactgccagc cagctggccg actgcggcta cgagctcgcc ggcgaggccg gtgacggcgc
     3901 cagcgcgatc gcgctctacc gcgcattgcg cccggacgtg gtgctgctcg acctggtcat
     3961 gcccgaggtc gacggccggc aggcgctcga acagatcatg gcgttcgacc cgcaggcacg
     4021 ggtggtcgtg ctcagctcgc tcggcgcgca ggccgacatc gagcaatgcc tgcgcatggg
     4081 cgcgcgcagc tacctgcaga agccgatcga cccgacggtc ctgcgccgcg tgctcgccga
     4141 agcgacggcc tgaggacgac accatggcag ccgccaagtt cttcggccag ttcctgctcg
     4201 agcgcggcgc gatcgacgcc cgccagctgc ttcgcgcgct ggaactgcag cgcgcgtcca
     4261 acccgatgct cggcgagatc gcgcaggccg aaggcctgct caccatcgcc caggcgagca
     4321 tggtcccggc gtactacgga atgggctggc tg
//
LOCUS       DATIQC010000516         1749 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_492654, whole genome shotgun sequence.
ACCESSION   DATIQC010000516 DATIQC010000000
VERSION     DATIQC010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492654"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..1525)
                     /gene="ntrC"
                     /locus_tag="VLM17_11045"
     CDS             complement(95..1525)
                     /gene="ntrC"
                     /locus_tag="VLM17_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010487191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HSR66121.1"
                     /translation="MTEPARIWVVDDDRAVRFVLATALRDAGYAVDAFDSAADVLSAL
                     RTREDAAQPDLLFTDVRMPGDDGLVLLDRLKARHPQLPVVVMSAYTDVASTAGAFRGG
                     AQEFLSKPFDLDDAVALAARVLAARGPRAGTEAVAVEATSAAADGELVGSTPAMQTLF
                     RSIGRLAQAPLSVLITGETGTGKELVARALHRESPRARLPFVALNTAAIPAELLESEL
                     FGHEAGAFTGATKRHVGRFEQADGGTLFLDEIGDMPLPLQTRLLRVLAEGEFFRVGGR
                     ELIRVDVRVVAATHQPLEALVADGRFRADLLHRLDVVRLRLPPLRERRDDVPLLATRF
                     LAGAAQRLGAPAKRFAKAALERLRAHPWPGNVRELENLCWRLAALAPGDTIGVADLDE
                     AFGAVATAHAAAGPDWERALAAWARARLAAGERALHADARARFDQVLLEAALAQAHGH
                     RGEAAALLGLGRNTLTRKLGARTPRR"
     gene            complement(1518..>1749)
                     /locus_tag="VLM17_11050"
     CDS             complement(1518..>1749)
                     /locus_tag="VLM17_11050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HSR66122.1"
                     /translation="IEVMDRGSGMSEAVLSNALVPFYSTKRSGTGLGLALAQQVAREH
                     GGSLAYRSRPGHTVFTLLLPMTQDAATETADD"
BASE COUNT          218 a          640 c          680 g          211 t
ORIGIN      
        1 accttacccg gcgtccgctg gcgggtgaag cgccaccgcc ccgcgccgca cggcgagccg
       61 gccgccgcgc ggtgcgggat gcgggatgcg gtgctcatcg tcgcggcgtg cgcgcgccga
      121 gcttgcgggt gagcgtgttg cggccgaggc cgagcagcgc ggcggcttcg ccgcggtggc
      181 cgtgggcctg cgcgagcgcc gcctccagca acacctggtc gaagcgcgcg cgcgcgtcgg
      241 cgtgcagcgc gcgttcgcca gcggcgaggc gggcccgcgc ccaggcggcg agcgcgcgtt
      301 cccagtcggg acctgccgcc gcgtgcgcgg tggccaccgc gccgaaggcc tcgtcgaggt
      361 cggcgacgcc gatggtgtcg ccgggggcca gcgcggcgag ccgccagcac aggttctcca
      421 gttcgcgcac gttgcccggc cacggatgcg cgcgcaggcg ttcgagcgcg gccttcgcga
      481 agcgcttggc cggcgcgccg aggcgctgcg ccgcgccggc gaggaagcgg gtggccagca
      541 gcggcacgtc gtcgcggcgc tcgcgcagcg gcggcaggcg caggcgcacc acgtccaggc
      601 ggtgcaggag gtcggcgcgg aagcggccgt cggcgaccag cgcctccagc ggctggtggg
      661 tggcggcgac cacccgcacg tcgacgcgga tcaattcgcg gccgccgacg cggaagaact
      721 cgccctcggc cagcacgcgc agcaaccgcg tctgcagcgg caacggcatg tcgccgatct
      781 cgtcgaggaa cagggtgccg ccgtcggcct gttcgaagcg cccgacatgg cgtttcgtcg
      841 cgccggtgaa cgcgccggct tcatgcccga acagttcgct ttccagcagc tcggcgggga
      901 tcgcggcggt gttgagcgcg acgaagggca ggcgcgcgcg cggcgactcg cgatgcagcg
      961 cgcgcgcgac cagttccttg cccgtcccgg tttcgccggt gatcagcacc gacagcggcg
     1021 cctgcgcgag ccggccgatg ctgcggaaca gcgtctgcat cgccggcgtg ctgccgacca
     1081 gctccccgtc ggccgcggcg ctcgtcgcct cgacggcgac ggcctccgtc ccggcgcgcg
     1141 gcccgcgcgc ggcgagcacg cgcgccgcca aggccaccgc gtcgtcgagg tcgaacggct
     1201 tggacaggaa ttcctgcgcg ccgccgcgga atgcgccggc ggtgctggcg acgtcggtgt
     1261 aggcgctcat caccaccacc ggcagctgcg gatgccgcgc cttcagccgg tcgagcagga
     1321 cgaggccatc gtcgccgggc atgcgcacgt cggtgaacag caggtccggc tgcgcggcgt
     1381 cttcgcgcgt gcgcaacgcg gacagcacgt cggcggcgct gtcgaacgcg tcgacggcgt
     1441 agccggcgtc gcgcagggcc gtggcgagca cgaagcggac ggcgcggtcg tcgtcgacga
     1501 cccagatgcg ggccggctca gtcatcggcg gtctccgtcg cggcatcctg cgtcatcggc
     1561 agcagcaggg tgaacaccgt gtgccccggg cgcgagcggt aggcgagcga gccgccgtgc
     1621 tcgcgcgcga cctgctgcgc cagcgccagg cccaggccgg tgccgctgcg cttggtggaa
     1681 tagaagggca cgagcgcgtt cgacagcacg gcctcgctca tgccgctgcc gcgatccatc
     1741 acctcgatg
//
LOCUS       DATIQC010000517         5000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_492673, whole genome shotgun sequence.
ACCESSION   DATIQC010000517 DATIQC010000000
VERSION     DATIQC010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492673"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1629
                     /locus_tag="VLM17_11055"
     CDS             <1..1629
                     /locus_tag="VLM17_11055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0009290 - DNA import into cell involved in
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HSR66123.1"
                     /translation="HLIAISGFHVGLVAGFFALLASLAWRAWPVLARRVPRVQAAGVA
                     CVLGALGYAAVAGFALPTLRTVLMIAVVVGARLFRRARRAVDALALAALALLLVDPLS
                     LLSAGFWLSFAGVAWLLWCLPAAQAHGWGGRLREFLAAQAVATIGLLPFGVALFGQAS
                     LAGPVANLLAIPWWSLVVVPLALGGTALEAVHAGLGAGCWRLAASAFDLAWPLLQHLA
                     QGPLALCWLPEARWFALPFALLGGLWLLLPRGVPGKPLALLLWLPLLWPDRALPATGE
                     AELTVLDVGQGLSVLVRTRGHALLFDMGPAVPDGFDAGERVDVPALHALGVHALDAAI
                     VSHGDNDHAGGFPAVARTFPPRLAYTPDGAPPLPGGRPCIAGTAWDWDGVRFRFLHPP
                     RDFPYLDNESGCVLRIEAHGHAALLMADVGEVVEHRLLREAPADLRADVVVVGHHGSR
                     GSSAPEFVEATGAREAMISAGWGNRFHHPHRGVVERWRQAGARVHVTFEDGADAVRLS
                     ATGVTVAARRDARPRLWDAARRHAQVAGLSYRPK"
     gene            1678..2340
                     /locus_tag="VLM17_11060"
     CDS             1678..2340
                     /locus_tag="VLM17_11060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HSR66124.1"
                     /translation="MLELVKAGGWPMIPLLLLSMAAVAIIVERFWTLRRKAVLPPRLG
                     DEVRAWASRGKLDPAHIESLRQTSPLGALLAAALDVRNRPRDHIRERIEDVGRHLVHR
                     MERFLNTLGTIAAAGPLLGLFGTVVGMIQMFLGILNHGIGDVSQLAGGIGKALVCTAT
                     GMVVAIPALMFHRYFRGRIAGYIVDMEHEAILLLDTLDPRPASARTAPGGHGIVPPVP
                     AD"
     gene            2342..2782
                     /locus_tag="VLM17_11065"
     CDS             2342..2782
                     /locus_tag="VLM17_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HSR66125.1"
                     /translation="MRIRDFRKDDEPEINLIPLIDVVLCLVIFFVITTTFDTRSVLKL
                     ELPRADGQPSPSQVKALSVLVNADGRYFIDDREALRTDVDSLKRTIAEVAGSDRDRGV
                     LLRADARTPHQAVVTALDALGQLGFRHVAIATAPTPAAAGGPAR"
     gene            2779..4536
                     /gene="msbA"
                     /locus_tag="VLM17_11070"
     CDS             2779..4536
                     /gene="msbA"
                     /locus_tag="VLM17_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005319 - lipid transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006869 - lipid transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A export permease/ATP-binding protein
                     MsbA"
                     /protein_id="HSR66126.1"
                     /translation="MSEADSPWRIYRRLIGFARPYRALLACAALAMLVEAAAAGAFTS
                     LMKPVVDETFIARDARVSLLLPLAIVAIFVVRGIAGYGTDIYMAKSGRGVARDLRVRV
                     FGKYLRMPGARFDHEPVGSMLVRLGSDSDQVAQAAIDAMKVMVQQALQVVVMLGVMLW
                     TSWRVTLAMLLLGPVLAWMMDKVGRRYRRLGHRIQESGAQLLQHADQALTGQQEVKVY
                     GAQAVEQERYRQLAEQNYRLALKVESTRSISSAVIQLMGSVGLAMLLFFAGHEALAGR
                     LSAGGFVKIMMSMLAIIPALRQLTNVQSMLQRGVASAERLFGILDAGDEDDAGARPLG
                     RARGLLEFRDVSARYEGQAQPALQHVRFVAKPGTVTAIVGRSGSGKSTLVKLIPRFYE
                     PTSGEILLDGHPLRDYRLADLRRQIALVGQQVMLFDGTIAANVAYGELEGADAGRLER
                     AVVGANAMEFVDRLPDRLQASIGSRGGRLSGGQRQRLAIARAMLKDAPILILDEATAA
                     LDAESERLVQDALDRLLPDRTTLVIAHRLSTIEHADQVLVLDHGRLVEQGTHAELLAR
                     DGLYAHLHRSQFRDQPTGA"
     gene            4544..>5000
                     /gene="lpxK"
                     /locus_tag="VLM17_11075"
     CDS             4544..>5000
                     /gene="lpxK"
                     /locus_tag="VLM17_11075"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005412821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HSR66127.1"
                     /translation="MARTPPWWYDATQAPPLRSRLLAWLYGAAVATRARLYRRRWLRI
                     ERVAAPVLVVGNVVAGGSGKTPLTIAVVERLRAEGWRPGVASRGYGRADAGTPRWVQA
                     GDDPRVAGDEPVLLAMHTGAPVRVDRDRVAAARALVEAGCDVVVCDDGLQ"
BASE COUNT          590 a         1811 c         1847 g          752 t
ORIGIN      
        1 cacctgatcg cgatctccgg cttccacgtc ggcctggtcg ccggcttctt cgcgctgctc
       61 gcctcgctgg cctggcgcgc ctggccagtg ctcgcgcgcc gcgtgccgcg cgtgcaggcc
      121 gccggcgtcg cctgcgttct cggcgcgctc ggctacgccg ccgtcgccgg tttcgcattg
      181 ccgacgctgc gcaccgtgct gatgatcgcg gtggtggtgg gcgcgcgcct gttccgccgc
      241 gcccggcgcg cggtggatgc gctggcgctg gcggcgctcg ccctgctgct cgtcgatccg
      301 ctgtcgctgc tctcggccgg cttctggctc agcttcgccg gggtcgcgtg gctgctgtgg
      361 tgcctgccgg cggcgcaggc gcacggctgg ggcggacgcc tgcgcgagtt cctggcggcg
      421 caggccgtgg cgaccatcgg actgctgccg ttcggcgtgg cgctgttcgg ccaggcctcg
      481 ctggcggggc cggtcgccaa cctgctcgcg atcccgtggt ggagcctcgt ggtcgtcccg
      541 ctcgctctcg gcgggaccgc gctggaggcc gtgcatgcgg ggctcggggc cggatgctgg
      601 cggctggcgg cctcggcctt cgacctcgcc tggccgctgc tccagcacct tgcgcagggt
      661 ccgctggccc tgtgctggct gcccgaagcg cgctggttcg cgctgccgtt cgcgctgctc
      721 ggcggcctgt ggctgctgct gccgcgcggc gtgcccggca agccgctggc gctcctgctc
      781 tggctgccac tcctgtggcc ggatcgcgcg ttgccggcga ccggcgaggc ggaattgacc
      841 gtgctcgacg tggggcaggg gctgtcggtg ctggtgcgca cccgggggca tgcgctgctg
      901 ttcgacatgg ggcccgctgt gcctgacggc ttcgacgccg gcgagcgggt cgacgtgccg
      961 gcgctgcacg cgctgggcgt gcacgcactc gacgccgcca tcgtcagcca tggcgacaac
     1021 gaccacgccg gtggcttccc ggccgtcgcg cggacgttcc cgccgcgcct ggcctacacg
     1081 cccgacggcg cgccgccgct tcccggcggc cggccgtgca tcgccggcac cgcatgggac
     1141 tgggacggcg tgcgcttccg cttcctgcat ccgccgcgcg atttccccta cctcgacaac
     1201 gaatccggct gcgtcctgcg catcgaagcc cacggccacg ccgccctgct gatggcagac
     1261 gtcggcgagg tggtcgagca tcgcctgttg cgcgaagcgc ccgccgacct gcgcgccgac
     1321 gtggtcgtcg tcggccacca cggcagcagg ggctcctccg ctcccgagtt cgtcgaggca
     1381 accggtgcac gcgaggcgat gatctcggcc ggctggggca accgcttcca ccatccgcac
     1441 cgcggggtgg tcgagcgttg gcggcaggcc ggtgcgcgcg tgcacgtcac cttcgaggac
     1501 ggcgccgatg ccgtgcggct gtccgcgacc ggcgtcacgg tggccgcacg acgcgacgca
     1561 cggccgcgct tgtgggacgc ggcgcggcgg cacgcgcagg tcgctgggct atcctatcgg
     1621 cccaaatgac ggtgatcgac ggcgacgccc cggtcgccgc agaccggagg aacgcgcgtg
     1681 ctggaactgg tgaaggctgg cggctggccg atgatcccgc tgctgctgct gtcgatggcg
     1741 gcggtggcga tcatcgtcga gcggttctgg acgttgcgtc gcaaggccgt gctgccgccg
     1801 cgcctgggcg acgaggtgcg ggcgtgggcg tcgcgcggca agctcgaccc cgcgcacatc
     1861 gagtcgctcc gccagacgtc gccgctgggc gcgctgctcg ccgccgccct cgacgtgcgc
     1921 aaccgcccgc gcgaccatat ccgcgagcgc atcgaggacg tcggccgcca cctcgtgcac
     1981 aggatggagc gcttcctcaa cacgctcggc acgatcgccg cggccgggcc gctgctcggc
     2041 ctgttcggca ccgtggtcgg catgatccag atgttcctcg gcatcctcaa ccacggcatc
     2101 ggcgacgtga gccagctcgc cggcggcatc ggcaaggcgc tggtgtgcac cgcgaccggc
     2161 atggtggtgg cgatccccgc gctgatgttc caccgctact tccgcggccg catcgccggt
     2221 tacatcgtcg acatggaaca cgaggcgatc ctgctgctcg acacgctcga cccgcgcccg
     2281 gcgtccgcgc gcaccgcgcc gggcggccac ggcatcgtgc cgccggtgcc ggcggactga
     2341 cgtgcgcatc cgcgacttcc gcaaggacga cgagccggag atcaacctga tcccgctgat
     2401 cgacgtcgtg ctgtgcctgg tgatcttctt cgtgatcacc accaccttcg acacccgctc
     2461 ggtgctcaag ctcgagctgc cgcgcgccga cggccagccg tcgccatcgc aggtcaaggc
     2521 actgagcgtg ctggtgaacg ccgacggccg ttacttcatc gacgaccgcg aagcgttgcg
     2581 caccgacgtc gattcgctca agcgcacgat cgccgaggtc gccggcagcg accgcgaccg
     2641 cggggtgctg ctgcgcgccg acgcgcgcac gccgcaccag gcggtggtga ccgcgctgga
     2701 tgcgctcggc cagctcggtt tccgccacgt cgccatcgcc accgcgccga caccggccgc
     2761 agcgggcggg cccgcgcggt gagcgaagcg gactcgccct ggcggatcta ccggcgcctg
     2821 atcggcttcg cgcggccgta tcgcgcattg ctcgcctgcg ccgcgctggc gatgctggtc
     2881 gaggcggcgg cggccggcgc gttcacctcg ctgatgaaac cggtggtgga cgagaccttc
     2941 atcgcccgcg acgcgcgggt cagcctgctg ctgccgctgg cgatcgtcgc catcttcgtc
     3001 gtgcgcggca tcgccggcta cggcaccgac atctacatgg cgaagtccgg gcgcggcgtc
     3061 gcccgcgacc tgcgcgtgcg ggtgttcggc aagtacctgc gcatgcccgg cgcgcgcttc
     3121 gaccacgagc cggtcggctc gatgctggtg cgcctgggct cggacagcga ccaggtcgcg
     3181 caggccgcga tcgatgcgat gaaggtgatg gtgcagcagg cgctgcaggt cgtcgtcatg
     3241 ctcggggtga tgttgtggac gagctggcgg gtgacgctgg cgatgctgct gctcgggccg
     3301 gtgctggcat ggatgatgga caaggtcggg cgccgctacc gcaggctcgg ccatcgcatc
     3361 caggaaagcg gcgcccagct gctccagcac gccgaccagg cgttgaccgg ccagcaggaa
     3421 gtgaaggtct acggcgccca ggcggtcgag caggagcgct atcgccagct cgccgaacag
     3481 aattaccggc tcgcgctcaa ggtcgagtcc acccgcagca tctcgtcggc ggtgatccag
     3541 ctgatgggct cggtggggct ggcgatgctg ctgttcttcg ccggccacga ggcactggcc
     3601 ggccgcctga gcgcgggtgg cttcgtcaag atcatgatgt cgatgctggc gatcatcccc
     3661 gcgctgcgcc agctcaccaa cgtgcagagc atgctgcagc gtggcgtggc ctcggccgaa
     3721 cggctgttcg gcatcctcga cgccggggac gaggacgacg ccggcgcccg gccgctcggg
     3781 cgcgcgcgcg gcctgctcga attccgcgac gtctccgcgc gctacgaggg ccaggcgcag
     3841 ccggcgctgc agcacgtccg gttcgtggcg aagccgggca cggtcaccgc gatcgtgggt
     3901 cgctcgggca gcggcaagtc gacgctggtg aagctgatcc cgcgcttcta cgagccgacc
     3961 tcgggcgaga tcctgctcga cggccacccg ctgcgcgact accgcctggc cgacctgcgc
     4021 cggcagatcg cgctggtcgg ccagcaggtg atgctgttcg acggcaccat tgccgccaac
     4081 gtcgcctacg gcgaactcga aggcgccgac gccgggcggc tggagcgcgc ggtggtcggc
     4141 gcgaacgcga tggagttcgt cgatcgcctg cccgatcgcc tgcaggcctc gatcggcagc
     4201 cggggcgggc gcctgtccgg cggccagcgc cagcgcctgg cgatcgcgcg cgcgatgctc
     4261 aaggacgcac cgatcctgat cctcgacgag gcgaccgccg cgctcgacgc cgaatccgag
     4321 cgcctggtgc aggacgcgct cgaccgcctg ctgcccgacc gcaccacgct ggtgatcgcg
     4381 caccgcctgt cgaccatcga gcacgccgac caggtcctgg tgctcgacca cggccggctg
     4441 gtggagcagg gcacgcatgc cgagctcctg gcgcgcgatg gactgtacgc gcacctgcac
     4501 cgcagccagt tccgcgacca gccgacgggc gcctgagccg cgcatggcca ggacgccgcc
     4561 ctggtggtac gacgcgaccc aggcgccacc gctgcggtcg cggttgctgg cgtggctgta
     4621 cggagccgcc gtcgccacgc gcgcgcgact gtatcggcgc cgctggctgc gcatcgaacg
     4681 ggtcgccgca ccggtgctgg tggtgggcaa cgtggtcgcc ggcggcagcg ggaagacgcc
     4741 gctgacgatc gcggtcgtcg agcgcctgcg cgcggaaggc tggcggccgg gcgtggcgtc
     4801 gcgggggtat gggcgcgcgg acgcagggac gccgcgctgg gtacaggccg gcgacgatcc
     4861 gcgcgtggcg ggcgacgagc cggtgctgct cgccatgcac accggcgcgc ccgtgcgggt
     4921 cgaccgcgat cgcgtggcgg ctgcgcgcgc cctggtcgag gcgggctgcg acgtggtcgt
     4981 gtgcgacgac ggcctgcagc
//
LOCUS       DATIQC010000518         4192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_633700, whole genome shotgun sequence.
ACCESSION   DATIQC010000518 DATIQC010000000
VERSION     DATIQC010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_633700"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1136
                     /gene="ruvB"
                     /locus_tag="VLM17_11080"
     CDS             105..1136
                     /gene="ruvB"
                     /locus_tag="VLM17_11080"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HSR66128.1"
                     /translation="MDEARIIAAGATREDEALEASIRPKTLDEYLGQAPVREQMQIYI
                     DAAKRRGEALDHVLIFGPPGLGKTTLSHVIANELGVGLRQTSGPVIEKAGDLAALLTN
                     LQPHDVLFVDEIHRLSPAIEEILYPAMEDFQIDIMIGEGPAARSIKLDLPPFTLIGAT
                     TRAGLLTAPLRDRFGIVQRLEFYTPEELARIVRRSARILGIDCAAEGAGEIARRSRGT
                     PRIANRLLRRVRDYAQVKAQGHIDQDVADAAMRMLKVDPEGFDELDRRMLRTIVEAFD
                     GGPVGVESLAAALSEERGTLEDVIEPYLIQQGYLVRTARGRMATPKAYRHLGLQPRRK
                     ESDLFGAAE"
     gene            1165..1596
                     /gene="ybgC"
                     /locus_tag="VLM17_11085"
     CDS             1165..1596
                     /gene="ybgC"
                     /locus_tag="VLM17_11085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003472570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HSR66129.1"
                     /translation="MNRSFIHPVRVYWEDTDAGGVVYHAQYIAFLERARSEWLRALGK
                     EQERLRAEHDLVFAVRAMRVDFRAPARLDDALAVSAGLRECRRASLVFAQSIRRGGEL
                     LLDAEVRVAALGAATFRPRPIPDPLYAELKAFELDPMETNA"
     gene            1593..2378
                     /gene="tolQ"
                     /locus_tag="VLM17_11090"
     CDS             1593..2378
                     /gene="tolQ"
                     /locus_tag="VLM17_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010894366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HSR66130.1"
                     /translation="MIPLLAALQAATAEPLPEDAPARVATAAADAAPVAAHHGIDILQ
                     LVLHASLPVQIVMLLLLCASIASWVIILRKKRVLDRALREADRFEERFWSGSDMAKLY
                     AGATDRNRGVAGLEAIFEGGFREFNRVRQRRGVDARAQLEGAQRAMRATTSRELDGLE
                     HNLEFLANVGSISPYVGLFGTVWGIMVSFQGLADVKEATIATVAPGISEALVATAMGL
                     FAAIPAVWAYNRFATRVERLATRYDAFSEEFSSILQRQAHLED"
     gene            2382..2819
                     /gene="tolR"
                     /locus_tag="VLM17_11095"
     CDS             2382..2819
                     /gene="tolR"
                     /locus_tag="VLM17_11095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017907449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098567 - periplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolR"
                     /protein_id="HSR66131.1"
                     /translation="MAPAASRRQRRRKLKAEINVVPYIDVMLVLLIIFMVTAPLLNLG
                     TDIKLPDSKAKALSTPKQPIVVSVYADGRYALMVERDNREMAAAEITARLRAIHDQNG
                     DATVLVNGDRDASYQKVITAIDLIKAAGFQQVSLISRPQEAAR"
     gene            2820..3758
                     /gene="tolA"
                     /locus_tag="VLM17_11100"
     CDS             2820..3758
                     /gene="tolA"
                     /locus_tag="VLM17_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098567 - periplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HSR66132.1"
                     /translation="MRETRADTTLAVTAALLLHALIFAALLLGLRWQRPMEAGAGEPV
                     SAQLVDANALSAATLRALAEPSPPTPAPTPAAPPPQPLPVPVPEDAQVPRQSQPQQQL
                     PQPDTREQERVDRNAVSPETAPKEQDELHRQAQVDLTDLERQQKEAEQKRALAQRMQE
                     RAQQLADIRRQREEAAKDARLAQQKLQQIRDAQSRNAAEAAAQADAAASAPPGERGTD
                     TGLLAKYRAALQSAITQNWTRPDSVPLGQRCKIVIRQLPGGQVVDAQVDPSCPYDEAG
                     RRSIEAAVLKAQPLPYAGFEPVFQRTLILNFEAQDR"
     gene            3874..>4192
                     /locus_tag="VLM17_11105"
     CDS             3874..>4192
                     /locus_tag="VLM17_11105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012445349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HSR66133.1"
                     /translation="MNRASRLLASLLCFFALLPLAALAQERGLEIDIVGGNASATPIV
                     VVPMAYQGSAAAPQTDVAGIIRADLDRSGQFRTLPERDIVEKPTRGDQINYATWRALK
                     QDYI"
BASE COUNT          669 a         1524 c         1442 g          557 t
ORIGIN      
        1 atccttgacc tccaatttcc cccgctgccg cgcgcccctt ttactaaaag gggctgatcc
       61 accagatggc gggaatgagg gctgatgacg ggtacgatag acccatggac gaagcacgca
      121 tcatcgccgc cggcgccacc cgcgaggacg aggcgctgga agcctcgatc cgcccgaaga
      181 cgctggacga atacctcggc caggcgccgg tgcgcgagca gatgcagatc tacatcgacg
      241 cggccaagcg ccgcggcgag gcgctcgacc acgtgctgat cttcggtccg ccgggcctcg
      301 gcaagaccac gctcagccac gtgatcgcca acgagctcgg cgtcggcctg cggcagacgt
      361 cggggccggt gatcgagaag gccggcgacc tcgccgcgct gctgaccaac ctgcagccgc
      421 acgacgtgct gttcgtcgac gagatccacc gcctgtcccc ggcgatcgag gagatcctct
      481 atccggcgat ggaggatttc cagatcgaca tcatgatcgg cgagggcccc gccgcgcgct
      541 cgatcaagct cgacctgccg ccgttcaccc tgatcggcgc gaccacccgc gccggcctgc
      601 tgaccgcgcc gctgcgcgac cgcttcggca tcgtccagcg cctcgagttc tacacgcccg
      661 aggagctggc caggatcgtg cgccgctccg cgcgcatcct cggcatcgac tgcgcggccg
      721 aaggcgccgg tgagatcgcg cgccgctcgc gcggcacccc gcgcatcgcc aaccgcctgc
      781 tgcggcgcgt gcgcgactac gcgcaggtga aggcgcaggg ccacatcgac caggacgtcg
      841 ccgacgcggc gatgcgcatg ctgaaggtgg acccggaggg gttcgacgag ctcgaccggc
      901 gcatgctgcg cacgatcgtg gaagccttcg atggcggccc ggtcggggtc gaatcgctcg
      961 ccgccgcgct cagcgaggaa cgcggcacgc tcgaggacgt gatcgagccc tacctgatcc
     1021 agcagggcta cctcgtgcgc accgcgcgcg gccgcatggc gacgccgaag gcctaccgcc
     1081 acctcggcct gcagccgcgg cgcaaggaat ccgacctgtt cggcgcggcc gagtagcggc
     1141 cggaacaccc ggaatggcgc cagcatgaat cgctcgttca tccaccccgt gcgcgtttac
     1201 tgggaagata ccgacgcggg cggcgtcgtg taccacgcgc agtacatcgc cttcctcgag
     1261 cgcgcgcgca gcgagtggct gcgggcgctg ggcaaggagc aggagcggtt gcgcgcggag
     1321 catgacctcg tgttcgcggt gcgggcaatg cgggtggatt tccgcgcgcc ggcacggctg
     1381 gacgatgcgc tggcggtgtc ggccgggctg cgcgagtgcc ggcgcgcgag cctggtgttc
     1441 gcgcagtcga tccgccgcgg cggcgagctg ctgctggacg ccgaggtgcg cgtcgcggcg
     1501 ctcggcgccg ccacgttccg cccgcgcccg attcccgacc cgctgtacgc ggaactgaag
     1561 gccttcgaac tggatccgat ggagaccaac gcatgattcc actgctggcc gccctgcagg
     1621 cggcgaccgc cgagccattg ccggaggacg cccccgcgcg cgtcgccacc gcggccgccg
     1681 acgcggcccc cgtcgccgcg caccacggca tcgacatcct tcagctggtg ctgcacgcca
     1741 gcctgccggt gcagatcgtg atgctgctcc tgttgtgcgc gtcgatcgcc tcctgggtga
     1801 tcatcctgcg caagaagcgc gtgctcgacc gcgcgctgcg cgaggccgac cgcttcgagg
     1861 agcgcttctg gtcggggtcg gacatggcca agctctacgc cggcgccacc gaccgcaacc
     1921 gcggcgtggc cgggctggaa gcgatcttcg aaggcggatt ccgcgagttc aaccgggtgc
     1981 gccagcgccg tggagtggat gcgcgcgcgc agctggaagg cgcgcagcgc gcgatgcgcg
     2041 cgaccaccag ccgcgagctc gacgggctcg agcacaacct cgagttcctc gccaacgtcg
     2101 gctcgatcag cccctacgtc ggcctgttcg gcacggtgtg ggggatcatg gtgtcgttcc
     2161 agggcctggc cgacgtcaag gaagcgacga tcgccaccgt cgcgccaggc atttccgagg
     2221 cgctggtcgc caccgcgatg ggcctgttcg cggcgatccc ggcggtgtgg gcgtacaacc
     2281 gcttcgcgac ccgggtcgag cggctggcca cgcgctacga cgcgttctcc gaggagttct
     2341 cctcgatcct gcagcggcag gcgcacctgg aggactgacg catggccccc gccgccagcc
     2401 gccgccagcg caggcgcaag ctcaaggccg agatcaacgt cgtcccgtac atcgacgtga
     2461 tgctcgtcct gctgatcatc ttcatggtca ccgcgccgct gctcaacctc ggcaccgaca
     2521 tcaagctgcc cgattcgaag gccaaggcgc tgagcacgcc gaagcagccg atcgtggtga
     2581 gcgtgtacgc cgacggccgc tatgcgctga tggtggagcg cgacaaccgc gagatggcgg
     2641 ccgccgagat caccgcgcgc ctgcgcgcca tccatgacca gaacggcgac gccaccgtgc
     2701 tggtcaacgg cgacagggac gcgagctacc agaaggtgat caccgcgatc gacctgatca
     2761 aggcggccgg cttccagcag gtcagcctga tcagccggcc gcaggaggcg gcgcgctaga
     2821 tgcgcgaaac ccgcgccgac accacgctgg cggtcaccgc cgcgctgctg ctgcatgcgc
     2881 tgatcttcgc cgcgctgctg ctgggcctgc gctggcagcg gccgatggaa gccggcgccg
     2941 gggagccggt gtcggcgcag ctggtcgacg cgaacgcgct gtccgcggcg accctgcgcg
     3001 ccctcgccga accttcgccg ccgacacctg cccccacccc ggccgcgccg ccgccgcaac
     3061 cgctgcccgt gccggttccc gaggacgcgc aggtgccgag gcaatcgcag ccgcaacagc
     3121 agctgccgca gccggacacg cgcgagcagg agcgcgtcga ccgcaacgcg gtgtcgccgg
     3181 agacggcgcc gaaggaacag gacgagctgc accggcaggc gcaggtcgac ctcaccgacc
     3241 tcgagcggca acagaaggaa gccgagcaga agcgcgcgct cgcgcaacgg atgcaggagc
     3301 gcgcgcagca gctggccgac atccgcaggc agcgcgaaga ggcggcgaag gacgcgcgcc
     3361 tggcgcagca gaaactgcag cagatccgcg atgcgcagtc gcgcaacgcc gccgaggcgg
     3421 ccgcgcaggc ggatgcggcg gcgagcgcgc cgccgggcga gcgcggaacc gacacggggc
     3481 tgctggcgaa ataccgcgcc gcgctgcagt cggcgatcac ccagaactgg acgcgcccgg
     3541 acagcgtgcc gctgggccag cgctgcaaga tcgtgatccg ccagctgccg ggcgggcagg
     3601 tggtcgacgc acaggtggat ccgtcctgcc cctacgacga ggccgggcgc cgttcgatcg
     3661 aagccgcggt gctcaaggcc cagccgctgc cgtatgccgg cttcgagccg gtgttccagc
     3721 gcacgctgat cctcaatttc gaggcccagg accgctgacc gccgcgcgcc gcgccgcagt
     3781 cgacggcacc cgcggtccat cgccgttcat ctttgaggca tccttaacgg cgaagctgtt
     3841 aagagagctt aacgcctccg tctggatccc cgaatgaatc gagcctcgcg cctcctcgcg
     3901 tcgttgctgt gctttttcgc gctgctgccg ctggcggcac tcgcgcagga acgcggcctg
     3961 gagatcgaca tcgtcggcgg caacgcctcc gccaccccga tcgtggtcgt cccgatggcc
     4021 taccagggca gcgcggccgc gccgcagacc gacgtcgccg gcatcatccg cgcggacctc
     4081 gaccgctccg gccagttccg cacgctgccc gagcgcgaca tcgtcgagaa gccgacccgt
     4141 ggcgaccaga tcaactacgc cacctggcgc gcgctcaagc aggactacat cg
//
LOCUS       DATIQC010000519        15011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_33398, whole genome shotgun sequence.
ACCESSION   DATIQC010000519 DATIQC010000000
VERSION     DATIQC010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 15011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15011
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33398"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..114)
                     /locus_tag="VLM17_11110"
     CDS             complement(<1..114)
                     /locus_tag="VLM17_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator"
                     /protein_id="HSR66134.1"
                     /translation="MNIVIVDDQTSARTMLRHILEDISPELQVYDFGEPQRA"
     gene            complement(258..1778)
                     /gene="lysS"
                     /locus_tag="VLM17_11115"
     CDS             complement(258..1778)
                     /gene="lysS"
                     /locus_tag="VLM17_11115"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003486300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HSR66135.1"
                     /translation="MTQQPTTQATDAPVDENHLIAERRAKLAALRAQGIAFPNDFRRA
                     DHAGDLQAQYADAERWTGEALEGEGRRVALAGRLLAKRVMGKAAFAQVQDVSGRIQLF
                     LQASLGDAYEAFKGWDVGDIVAAEGTLMRTRTGELSVKAESLRLLVKSLRPLPDKWHG
                     LADVEQRYRQRYVDLIVNPEAREVFVKRSRIIGAMRRWLDARRFLEVETPMMHYIAGG
                     ATARPFTTHHNALDLDLFLRVAPELYLKRLTVGGFERVYEINRNFRNEGVSTRHNPEF
                     TMLELYEAYATYDEIMDLTEQLIRDVAREVLGTTAVQWEGNAIDLGPRFRRWKLEEAV
                     REKNPGISVADCRDRGALARHCERLRIPVKPGYGWGKLLLEIFEKTVEGGLVQPTFIT
                     HYPVEVSPLARESDSEPGITDRFELFVGGRELANGFSELNDPEDQAARFRAQVEAKDA
                     GDDEAMHYDEDYIRALEVGLPPTGGLGIGIDRLVMLLTDSASIRDVLLFPYMRPAG"
     gene            complement(1897..3025)
                     /gene="prfB"
                     /locus_tag="VLM17_11120"
     CDS             complement(join(1897..2949,2951..3025))
                     /gene="prfB"
                     /locus_tag="VLM17_11120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535374.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HSR66136.1"
                     /translation="MIELNPVRQRIADLTGRLDALRGYLDYDAKVERLEEVNRELESP
                     DVWNDAARAQALGRERSLLDKTVTGIRSLSQGVVGAGELLDLAEAENDEETANAVVDD
                     VERYARGVEQLEFQRMFSGKMDSHSAFVDIQAGAGGTEAQDWAEMLLRMYLRWAESRG
                     WKAELMEVSGGEVAGIKSATFRVEGDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFT
                     SVFVSPEVDDEIDIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHVPSGIVVACQT
                     ERSQHANRDRAMKMLAAKLYEMEMLKRNAERDAVEATKSDIGWGSQIRNYVLDQSRIK
                     DLRTGVERSDTQKVLDGDLDEFVESSLKAGLEAGAKRSDAA"
     gene            complement(3062..3955)
                     /locus_tag="VLM17_11125"
     CDS             complement(3062..3955)
                     /locus_tag="VLM17_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HSR66137.1"
                     /translation="MSSASPYQRYLPRRRWFEVGYWVLFCVVNAVANSATVVLEHERS
                     GDGLAAWQPMVWEASSALVILALAPALVWFTARWPLHWDTWRRRWPLYVLASLAWSLL
                     HVGGMVALRHLAYALEGGSYDFGYWPRELLYEYLKDARAFAGMVGLLHAYRWLLRRLQ
                     GEARLLDAPEEGAPVEAVERPERFLVRKLGREFLVAAADIEWAQAAGNYVNLRVRGHD
                     YPLRSTIAGIEARLDPARFARIHRSYLVNLDRLASIEPLDTGDARVHMDDGAVLPCSR
                     RYRAVLRERAQAGEAQPARAA"
     gene            4111..5325
                     /locus_tag="VLM17_11130"
     CDS             4111..5325
                     /locus_tag="VLM17_11130"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HSR66138.1"
                     /translation="MATATAPLPGTRRHDLDWIRVLAFLLLILYHVGMYYVTWDWHVK
                     SPFAGPALEPLMLASAPWRLSLLFLVSGVATAFLLDRSGPFLGPRSWRLLVPLVFGML
                     VVVPPQSYCELLDSHYPGGYHDGYLAFWGRYLAADHGFCDQDGCLRVPTWNHLWFVAY
                     LWAYTVVLWGARRLLPATLARAGARVGGWLARGANIVVAPALFLAIARIALVGRFEQT
                     HALLDDWYDHAQYLPVFLLGYWIARDGRVWERLRALRWPALACSTAGYAFIVWYFGAF
                     DEAHPPGDLLRMAQRVTWGAFQWSAIAAILGFGRQVDPGESRLLRYLTDAVFPFYILH
                     QTVIVVLAWELRPLALRPPVEGPLLVLATIGACLLGYELVRRVRWLRPLFGLRPQARR
                     IAAASVGEAAAG"
     gene            complement(5332..7044)
                     /gene="recJ"
                     /locus_tag="VLM17_11135"
     CDS             complement(5332..7044)
                     /gene="recJ"
                     /locus_tag="VLM17_11135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011037016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HSR66139.1"
                     /translation="MSVVRTIRRRAPVEPGAWPEHVPPLLRRIHAARGALSAEQAQPR
                     LAQLHPPDALGGLDAATALLADAIARDRHIVVVGDFDCDGATACAVGVRGLRLLGARR
                     ASHAVPNRMVHGYGLSPGLVDDLAALQPELLVTVDHGIACHAGIAAAKARGWQVLVTD
                     HHLPGEVLPPADAIVNPNLRGDGFPSKALAGVGVMFYVLLALRKQLRARAAFAQGEPD
                     LSVLLDLVAVGTIADLVPLDANNRALVGAGLRRLRAGQGCAGLQALIEVTGRDARTLG
                     AGDVGYAIAPRINAAGRLEDMALGIECLTCDEPARARELAQVLHGINAERQGVQQQMV
                     DEAEAELARIALDGALPPVLCLFDPEWHPGVVGLVASRLKERVHRPVIAFAPSEPGST
                     QLRGSARSIPGLHIRDVLAAVDSAQPDLIGRFGGHAMAAGMSLALERLPRFEDAVRSH
                     VGRMLDPGFLHAEILSDGELAAHECDRRHAELLRDGGPWGQGYPEPLFDGVFALRGWR
                     VVGERHLKLELDGWGRRVNAIEFGGWRGEPPPPRLRIAFRLEPDDYRGGDAVQLVVVH
                     REAA"
     gene            complement(7041..7901)
                     /locus_tag="VLM17_11140"
     CDS             complement(7041..7901)
                     /locus_tag="VLM17_11140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HSR66140.1"
                     /translation="MPELLARALGRAERLPDGAPGERAQLLRHFELLPRGWPVAALTR
                     QRDAGDAAGATWLRADPAHVRPDINGARLLGIGEALQPTRADVDALLPALRPLFGDAG
                     FALDAPTPSRWYLRLPREARLPAFAGPDDALGDDLFEHLPDGPEARRWRALLSEAQVV
                     LHNHPRNAERAALGLPALNSLWFWGAGVFPDHVTSPHAHVRSHEVLLDALARAAGIAD
                     AVAEGAGSVLVDYRALASFEPGFLDWIAGAVAGKIPRLSLDFADGARWELSGRQRWRF
                     WRRPAQHLSA"
     gene            complement(7963..8439)
                     /gene="greA"
                     /locus_tag="VLM17_11145"
     CDS             complement(7963..8439)
                     /gene="greA"
                     /locus_tag="VLM17_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009600880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HSR66141.1"
                     /translation="MRAPMTLKGSLRLRAELEELKSVKRPAVIQAIAEARAHGDLKEN
                     AEYHAAREQQGFIEGRIKQLEAELSHAQIIDVAGLNAGAKVVFGAIVDLADTETEEEK
                     TYQIVGDLEADIKQGLIAISSPVARALIGKHEGDTITIDAPAGQREYEIVGVRYEG"
     gene            complement(8436..11678)
                     /gene="carB"
                     /locus_tag="VLM17_11150"
     CDS             complement(8436..11678)
                     /gene="carB"
                     /locus_tag="VLM17_11150"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HSR66142.1"
                     /translation="MPKRTDLKTILIIGAGPIVIGQACEFDYSGAQACKALRDEGFRV
                     VLVNSNPATIMTDPNMADAVYIEPINWQSVEKIIAKEKPDALLPTMGGQTALNCALDL
                     ADHGVLEQHGVELIGASREAIRMAEDRELFRVAMQEIGLECPKAEVARSFEQAVDIQT
                     RVGYPTIIRPSFTLGGTGGGIAYNKEEFEEIARRGLELSPVHEILVEESVLGWKEFEM
                     EVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIG
                     VDTGGSNVQFGINAHDGRVVVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LKNEITGGLTPASFEPSIDYVVTKIPRFAFEKFPAADPRLTTQMKSVGEVMAIGRTFQ
                     ESLQKALRGLETGKIGLDPTGLDLADEEGLARLKREVKEPGPERIFHLADAFRAGMSV
                     EDVHALSFVDPWFLDQIEELVALEAEVASAGLDALDARRLRSLKRKGFSDARLAQLTG
                     TSESAVRVLRRAFGVRPVYKRVDSCAAEFATTTAYMYSTYEDECEADPSDRRKIIVLG
                     GGPNRIGQGIEFDYCCVHAALALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLE
                     DVLEIVEVEKPEGVIVQYGGQTPLKLARALEANGVPIIGTSPESIDLAEDRERFQQLV
                     EKLGLTQPPNRTARNPDEALALAREIGYPLVVRPSYVLGGRAMEVVHSDADLSRYIRD
                     AVKVSNDSPVLLDRFLDNAVEVDIDVIADKSGRVVIGGVMEHIEEAGVHSGDSSCSLP
                     PYSLTPAVQARLREQVVALARALNVIGLMNTQFAVQFDDAGNDTIYLLEVNPRASRTV
                     PFVSKATGVPLAKIAARCMAGRSLEEQGATTEVIPDYFSVKEAIFPFAKFQGVDPILG
                     PEMRSTGEVMGVGRSFGAAFARAEEAANIKAPGGGKAFISVRDPDKQRVVPVAHDLVR
                     RGYTLVATRGTATFLRDQGLACEVINKVMEGRPHVVDLIKNGEIAYIVNTTEGRQAIS
                     DSFSIRREALQQRVTYSTTIAGAKALLHSLDYRDSGPVWSLQELHKELSA"
     gene            complement(11680..12819)
                     /gene="carA"
                     /locus_tag="VLM17_11155"
     CDS             complement(11680..12819)
                     /gene="carA"
                     /locus_tag="VLM17_11155"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HSR66143.1"
                     /translation="MTQPAILVLEDGTVFEGDSVGAPGLAVGEVVFNTAMTGYQEIVT
                     DPSYARQIVTLTYPHIGNTGCNAADDESSRAWAAGLIVRDVPRRPSSWRSEVPLPEWL
                     RQRSVVAISGIDTRKLTRLLRDRGAQNGALMAADAASGKRIDVDAALEAARKFPGLKG
                     MDLAKEVCVRESYRWNAGQLDLDRNAFVPGGGRHHVVAYDFGIKTNILRMLAERGCDL
                     TVVPAQTPASEVFALNPDGVFLSNGPGDPEPCDYAIAATREFLARKIPLYGICLGHQL
                     LGLAIGAKTLKMKFGHHGANHPVIDIDTARVLITSQNHGFAVDESTLPANARVTHRSL
                     FDGSNQGIALSDAPAFSFQGHPEASPGPHDVSYLFDRFIASMEAR"
     gene            complement(13003..13719)
                     /gene="dapB"
                     /locus_tag="VLM17_11160"
     CDS             complement(13003..13719)
                     /gene="dapB"
                     /locus_tag="VLM17_11160"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010343343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HSR66144.1"
                     /translation="MQTPPRFVIHGASGRMGQALLRLCADQPEACRVVAAVSRGVPAQ
                     RVVDGVPWFAAAELGGLPAFDVAVDFSLPQGFDGILGLCRERGAALVSGTTGLEPAQR
                     DALEAAAARIPVLWASNFSLGVAVLAELVERAARALHGWDCDIVEAHHVHKQDAPSGT
                     ALTLGQAAERGGASPRYASLRAGDIIGEHTVQFTGLGERVELVHRATSREIFARGALH
                     AALRLVGRAPGQYRLADLLG"
     gene            13811..14491
                     /locus_tag="VLM17_11165"
     CDS             13811..14491
                     /locus_tag="VLM17_11165"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HSR66145.1"
                     /translation="MLDPGRLADASTTVLREPFPLLVARDQLPAGATQELVRDFPRYG
                     SAGFFPYDPADCGPAMHALVDAVTAPAFADALGALLGIERLGQYPTLVTLCQALNRRH
                     GTIHTDSASKVATALLYLHEEWPDTSGGCLRFLRSIDDIDALVLPEVRPLYGTLAAFR
                     RAGNSFHGHLPYEGERRVVQVAWLTSEAEKLRKTRRGRFSRLVKKLFGGLDRRLGAGR
                     DRNAAHRD"
     gene            14724..>15011
                     /locus_tag="VLM17_11170"
     CDS             14724..>15011
                     /locus_tag="VLM17_11170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HSR66146.1"
                     /translation="MTTTRRQFLQGAAALPLTLSLPLAGAATPLVRHDCASPQGIAML
                     QVLASAVRQMQQQPEASTLGWLWQWYTHFVNGATTKSSEIARLFGSGSSPGG"
BASE COUNT         2022 a         5326 c         5356 g         2307 t
ORIGIN      
        1 cgcccgctgc ggttcgccga agtcgtagac ctgcagctcg gggctgatgt cctcgaggat
       61 gtgccgcagc atggtgcggg cggacgtctg atcgtcgacg atgacgatat tcacgcgctg
      121 gccatcccgg gtcgggcccg cctgcggcgg gcgttgctgg catcgtggcg gccgcggcgg
      181 cggcaggcaa gccctcgtgg cggcccgcac catccgacgg gggatggcct cgcgaccggc
      241 cattaccccc gttatcgtca gccagccggc cgcatgtagg ggaacagcag cacgtcgcgg
      301 atcgaggccg agtcggtgag cagcatcacc aggcggtcaa tcccgatgcc gaggccacca
      361 gtaggaggca aacccacctc cagggcccgg atgtagtcct cgtcgtaatg catggcctcg
      421 tcgtcgccgg cgtccttggc ctcgacctgg gcacggaagc gcgcggcctg gtcctcgggg
      481 tcgttgagct cggagaagcc gttggcgagt tcgcgccccc ccacgaacag ctcgaagcgg
      541 tcggtgatgc ccggctcgct gtcgctttcg cgcgcgagcg gcgagacctc gaccggatag
      601 tgggtgatga aggtgggctg gacgaggccg ccttccaccg tcttctcgaa gatctccagc
      661 aacagcttgc cccaaccgta gccgggcttg accgggatcc gcaggcgttc gcaatggcgc
      721 gcgagcgcac cgcggtcgcg gcagtcggcg acgctgatcc ccgggttctt ctcgcgcacg
      781 gcctcctcca gcttccagcg gcggaagcgc ggcccgaggt cgatcgcgtt gccctcccac
      841 tgcaccgcgg tcgtgccgag cacttcccgg gcgacgtcgc ggatgagctg ctcggtcagg
      901 tccatgatct cgtcgtacgt ggcgtaggcc tcgtacagtt cgagcatggt gaactcgggg
      961 ttgtggcggg tgctgacgcc ttcgttgcgg aagttgcggt tgatctcgta cacccgctcg
     1021 aagccgccga cggtcaggcg cttgaggtag agctccggcg cgacgcgcag gaacaggtcg
     1081 aggtcgagcg cgttgtggtg ggtggtgaac ggtcgcgcgg tcgcgccgcc ggcgatgtag
     1141 tgcatcatcg gcgtctcgac ttcgaggaag cggcgtgcgt ccagccagcg ccgcatcgcg
     1201 ccgatgatgc gcgagcgctt gacgaagacc tcgcgcgcct ccgggttgac gatcaggtcg
     1261 acgtagcgct ggcggtagcg ctgctcgacg tcggccaggc catgccactt gtccggcagc
     1321 ggccgcagcg acttcaccag caggcgcagc gactcggcct tgaccgacag ctcgccggtc
     1381 ctggtgcgca tcagcgtgcc ctcggcggcg acgatgtcgc cgacgtccca gcccttgaag
     1441 gcctcgtagg cgtcgccgag cgacgcctgc aggaacagct ggatgcgccc ggacacgtcc
     1501 tgcacctgcg cgaacgcggc cttgcccatc acccgcttgg cgagcaggcg gccggcgagc
     1561 gcgacgcgcc tgccctcgcc ctccagcgcc tcgccggtcc agcgttcggc gtcggcgtac
     1621 tgcgcctgca ggtccccggc atggtcggcg cggcggaagt cgttcgggaa ggcgatgccc
     1681 tgcgcgcgca gcgcggccag cttggcgcgg cgctcggcga tcaggtggtt ctcgtcgacg
     1741 ggcgcgtcgg tggcttgggt cgttggctgc tgggtcatcg gtccgtttca tccttcgaca
     1801 ggcccaggac gaacggagag ccgttcgccg cggtccgttc gtggcgagcc tgccgaacca
     1861 cgaacgtcgg tgtgctttcc gtatcgcggc gccagcttac gccgcgtcgc tccgtttcgc
     1921 gcccgcttcc aggcccgcct tcaggctcga ctcgacgaac tcgtcgaggt cgccatccag
     1981 caccttctgg gtgtcggaac gctccacgcc cgtgcgcagg tccttgatcc gcgactggtc
     2041 gagcacgtag ttgcggatct ggctgcccca gccgatgtcc gacttcgtcg cctcgaccgc
     2101 gtcgcgctcg gcgttgcgct tgagcatctc catctcgtag agcttggccg ccagcatctt
     2161 catcgcgcgg tcgcggttgg cgtgctggct gcgctcggtc tggcaggcaa ccacgatgcc
     2221 gctcggcacg tgggtgatgc gcaccgccga ttccgtcttg ttgacgtgct ggccgccggc
     2281 gccggaggag cggtagacgt cggtcctgag gtcggccggg ttgatgtcga tgtcgatctc
     2341 gtcgtcgact tccggcgaca cgaacaccga ggtgaagctc gtatgccggc ggttgtcgga
     2401 atcgaacggc gacttgcgca ccaggcggtg cacgccggtc tcggtcttca gccagccgta
     2461 ggcgtagtcg ccctcgacgc ggaacgtcgc cgacttgatc ccggcgacct cgccaccgct
     2521 gacttccatc agctcggcct tccagccccg cgattcggcc cagcgcaggt acatgcgcag
     2581 cagcatctcg gcccagtcct gcgcctcggt gccgccggcg ccggcctgga tgtcgacgaa
     2641 ggccgagtgc gagtccatct tgccggagaa catgcgctgg aattccagct gctcgacgcc
     2701 gcgcgcgtaa cgctcgacgt cgtcgaccac cgcgttcgcg gtttcctcgt cgttctccgc
     2761 ctcggcgagg tcgagcagct cgcccgcgcc gaccacgcct tggctcaggc tgcggatgcc
     2821 ggtgacggtc ttgtcgagca gggagcgctc gcggcccagg gcctgcgccc gcgcggcgtc
     2881 gttccagacg tcggggcttt cgagttcgcg gttgacttct tccagacgct cgaccttggc
     2941 gtcgtagtca aagatacccc ctcagcgcat ccagccgacc ggtgaggtcg gcgatgcgct
     3001 ggcggacggg attgagttcg atcatctcgt tgcaaatcgc ggaaaacggc cgcggattct
     3061 atcaggcggc gcgtgccggc tgggcttcgc cggcctgcgc gcgctcgcgc aggacggcac
     3121 ggtaacggcg gctgcagggc agcaccgcgc catcgtccat gtgcacgcgg gcgtcgccgg
     3181 tgtccagcgg ctcgatcgac gccagccggt cgaggttcac caggtagctg cggtggatgc
     3241 gggcgaaccg cgccgggtcc agccgcgcct cgatcccggc gatggtgctg cgcagcggat
     3301 agtcgtggcc gcgaacgcgc aggttgacgt agttgccggc ggcctgcgcc cattcgatgt
     3361 cggcggccgc caccaggaac tcgcgaccga gcttgcgcac gaggaagcgc tcggggcgtt
     3421 cgaccgcctc caccggcgcg ccctcctccg gcgcgtcgag caggcgcgcc tcgccctgca
     3481 gccggcgaag cagccagcgg taggcatgca gcaggcccac catgccggcg aacgcgcggg
     3541 cgtccttcag gtattcgtac agcagctcgc gcggccagta gccgaagtcg tagctgccgc
     3601 cttccagggc gtaggccagg tggcgcaggg cgaccatgcc gccgacgtgc agcagcgacc
     3661 acgccaggct cgccagcacg tacagcggcc agcgccggcg ccaggtgtcc cagtgcagcg
     3721 gccagcgcgc ggtgaaccag accagcgccg gggcgagcgc gaggatcacc agggcgctgg
     3781 aagcctccca caccatcggc tgccaggcgg ccagtccgtc gccgctgcgc tcgtgctcca
     3841 gcacgacggt ggcgctgttg gccacggcat tcacgacgca gaacagcacc cagtagccga
     3901 cctcgaacca gcggcgccgg ggcaggtacc gctggtacgg ggaggcggag ctcatcgcag
     3961 cattctatcg gcgccggggc gtccggcctg ccgcaaccgt ccccgtgggc ccgcggttcg
     4021 tccccgggtc cgatcggatc gtcccctggc gctggcggcc ctgcgcgaga cggggaggct
     4081 ggacgctccc gccaccgccc gagcccctcc atggccaccg ccaccgcccc cctgcccggc
     4141 acccgtcgcc acgacctcga ctggatccgc gtgctcgcct tcctgctgct gatcctctac
     4201 cacgtgggca tgtactacgt gacgtgggac tggcacgtca aaagcccctt cgccggtccg
     4261 gcgctcgagc cgctgatgct ggccagcgcg ccttggcgcc tgtcgctgct gttcctggtg
     4321 tccggcgtcg cgacggcctt cctgctggac cggtccggcc cgttcctcgg cccgcgcagc
     4381 tggcggctgc tggtcccgct ggtgttcggc atgctggtgg tcgtgccgcc gcagtcctac
     4441 tgcgaactgc tcgattcgca ctacccgggc ggctaccacg acggctacct cgccttctgg
     4501 gggcgctacc tcgccgccga ccatggcttc tgcgaccagg acggctgcct gcgggtgccg
     4561 acctggaacc acctctggtt cgtggcctac ctgtgggcgt acacggtggt gctgtggggc
     4621 gcgcgcaggc tgctgccggc gacgctcgcg cgggctggcg cccgcgtcgg cgggtggctc
     4681 gcgcgcgggg ccaacatcgt ggtcgcgccc gccctgttcc tggcgatcgc gcgcatcgcc
     4741 ctggtcggcc gcttcgagca gacccacgcg ctgctcgacg actggtacga ccacgcgcaa
     4801 tacctgccgg tgttcctgct cggctactgg atcgcccgcg atggccgggt gtgggagcgc
     4861 ctgcgcgcgc tgcgctggcc cgcactggcg tgctccacgg cgggctacgc gttcatcgtc
     4921 tggtatttcg gcgccttcga cgaggcgcat ccgccgggcg acctgctgcg catggcccag
     4981 cgcgtgactt ggggagcctt ccagtggagc gcgatcgccg cgatcctcgg tttcggacgg
     5041 caggtcgacc cgggcgaaag ccgcctgctg cgctacctca ccgatgcggt ctttcccttc
     5101 tacatcctcc accagacggt gatcgtcgta ctggcctggg agctgcgccc gctcgcgttg
     5161 cgaccgccgg tcgagggccc gctgctggtg ctggcgacga tcggtgcctg cctgctcggc
     5221 tacgagctgg tgcggcgggt gcgctggctg cgaccgctgt tcgggctcag gccgcaggcg
     5281 cgccgcatcg cggccgcgtc cgtcggcgag gcggcggcgg gctgaagcgg atcaggcggc
     5341 ttcgcggtgc acgaccacca gctgcaccgc gtcgccgccg cggtagtcgt cgggttcgag
     5401 gcggaaggcg atgcgcaggc gcggcggcgg cggttcgccg cgccatccgc cgaactcgat
     5461 cgcattgacg cgacgtcccc agccgtccag ttccagcttg aggtggcgct cgcccaccac
     5521 ccgccagccg cgcagcgcga acacgccgtc gaacagcggt tcggggtagc cctgccccca
     5581 cgggccgccg tcacgcagca gttcggcgtg gcgacggtcg cattcgtgcg ccgcgagttc
     5641 gccgtcgctg aggatttccg cgtgcaggaa gcctgggtcg agcatccgtc cgacgtgcga
     5701 acgcacggcg tcctcgaagc gcggcagccg ctccagcgcg aggctcatgc ccgccgccat
     5761 cgcgtgcccg ccgaacctgc cgatcaggtc cggctgcgcg ctgtccaccg ccgccagcac
     5821 gtcccggatg tgcaggccgg ggatcgagcg cgccgaaccg cgcagctgcg tgctgcccgg
     5881 ctccgacggc gcgaacgcga tcaccggccg gtggacccgc tccttgagcc tggacgcgac
     5941 caggccgacc acgcccggat gccactcggg atcgaacagg cacagcaccg gcggcagcgc
     6001 gccgtcgagc gcgatgcggg ccagctccgc ttccgcctcg tcgaccatct gctgctgcac
     6061 gccctgccgc tcggcgttga tgccgtgcag gacctgcgcg agttcgcgcg cgcgggccgg
     6121 ttcgtcgcag gtcaggcact cgatgccgag cgccatgtcc tcgagccggc cggcggcatt
     6181 gatgcgcggc gcgatcgcgt agccgacgtc gccggcgccg agcgtgcggg catcgcggcc
     6241 cgtcacctcg atgagcgcct gcaggcccgc gcagccctgc ccggcgcgca gccgccgcag
     6301 gccggccccg accagcgcgc ggttgttggc gtccagcggc acgaggtcgg cgatggtgcc
     6361 gaccgcgacg agatcgagca gcaccgacag gtccggctcg ccctgcgcga aggcggcccg
     6421 tgcgcgcagc tgcttccgaa gcgcgagcag cacgtagaac atcacgccga cgccggccag
     6481 cgccttgctc gggaagccgt cgccgcgcag gttgggattg acgatggcgt cggcgggcgg
     6541 cagcacctcg cccggcaggt ggtggtcggt gaccagtacc tgccagccgc gcgccttcgc
     6601 cgcggcgatg ccggcgtggc aggcgatgcc gtggtcgacg gtgacgagca gttcgggctg
     6661 cagcgcggcg aggtcgtcga cgagccccgg cgacagcccg tagccgtgca ccatgcggtt
     6721 gggcaccgcg tgcgacgcgc gacgcgcgcc gagcaggcgc aggccgcgca cgccgaccgc
     6781 gcaggcggtg gcgccgtcgc agtcgaaatc gccaaccacg acgatgtggc ggtcgcgggc
     6841 gatcgcatcg gcgagcagcg cggtggcggc gtcgagcccg ccgagcgcat ccggcgggtg
     6901 cagctgggcc aggcgcggct gggcctgctc ggccgacagc gcgccgcgcg cggcgtggat
     6961 gcggcgcagc agcggcggca cgtgctcggg ccaggcgccc ggttcgacgg gcgcgcggcg
     7021 gcggatggtg cggacgacgc tcatgccgac agatgctgcg ccggccggcg ccagaaccgc
     7081 cagcgctgcc ggccggaaag ctcccagcgc gcgccgtcgg cgaaatccag cgacaggcgt
     7141 gggatttttc cggcgaccgc tccggcgatc cagtcgagga atcccggctc gaaggaagcg
     7201 agcgcgcggt agtcgaccag cacgctgccc gccccctccg caacggcgtc cgcgatgccc
     7261 gcggcgcgtg cgagcgcatc gagcagcacc tcgtggctgc gcacgtgcgc gtgcggactg
     7321 gtgacgtggt cggggaaaac gcccgcgccc cagaaccaca gcgagttgag cgccggcagc
     7381 cccagcgccg cgcgctcggc gttgcggggg tggttgtgca gcaccacctg cgcttcgctc
     7441 agcagggcgc gccagcgtcg tgcctcggga ccgtcgggca ggtgttcgaa caggtcgtct
     7501 cccagcgcat cgtcggggcc ggcgaacgcg ggcagcctgg cctcgcgcgg caggcgcagg
     7561 taccagcgcg acggcgtcgg tgcatccaag gcgaacccgg catcgccgaa cagcggacgc
     7621 agtgcaggca gcagtgcgtc gacgtcggcc cgggtgggct ggagcgcctc gccgatgccg
     7681 agcaggcgcg cgccgttgat gtccgggcgc acgtgcgcgg gatcggcgcg cagccacgtc
     7741 gcgccggcgg cgtcgccagc gtcgcgctgg cgcgtcagcg ccgcgaccgg ccagccgcgc
     7801 ggcagcagtt cgaagtgccg cagcagctgc gcgcgctcgc ccggcgcgcc gtccggcagg
     7861 cgttcggcgc gccccagcgc ccgcgccagc agctccggca tcggttgcgc ggcaaggcgc
     7921 ccgcgctcgg gcagcagcag cgtcgccgtc gcggcggtca cgtcagcctt cgtagcggac
     7981 gccgacgatc tcgtactcgc gctgccccgc cggcgcgtcg atggtgatcg tgtcgccctc
     8041 gtgcttgccg atcagcgcgc gcgccaccgg cgaggagatc gcgatcaggc cctgcttgat
     8101 gtcggcctcg aggtcgccga cgatctggta ggtcttctct tcctccgtct cggtgtcggc
     8161 aaggtcgacg atcgcgccga acaccacctt cgcgccggcg ttgaggcccg ccacgtcgat
     8221 gatctgcgcg tgagacagct ccgcctcgag ctgcttgatg cggccttcga tgaagccctg
     8281 ctgctcgcgc gcggcgtggt attcggcgtt ctccttgagg tcgccgtgcg cgcgcgcctc
     8341 ggcgatcgcc tggatgaccg cggggcgctt gaccgacttc agttcctcca gctcggcgcg
     8401 caggcggagc gaacccttca gcgtcatcgg cgctctcatg ccgaaagttc cttgtgcagt
     8461 tcctgcagcg accataccgg gccgctgtcg cggtagtcga gcgagtgcag cagcgccttc
     8521 gccccggcga tcgtggtcga ataggtgacg cgctgctgca gcgcctcgcg gcggatcgag
     8581 aacgagtcgg agatggcctg gcgaccctcg gtggtgttga cgatgtaggc gatctcgccg
     8641 ttcttgatca ggtcgacgac gtgcggccgg ccttccatca ccttgttgat cacctcgcag
     8701 gccaggccct ggtcgcgcag gaaggtcgcg gtgccgcgcg tggcgacgag ggtatagccg
     8761 cgacgcacca ggtcgtgcgc caccggcacc acgcgctgct tgtcggggtc gcgcaccgag
     8821 atgaatgcct tgccgccgcc cggcgccttg atgttcgccg cttcctcggc gcgcgcgaag
     8881 gccgcgccga agctgcggcc cacgcccatc acctcgccgg tggagcgcat ctccgggccg
     8941 aggatcgggt cgacgccctg gaacttggcg aacgggaaga tcgcttcctt gaccgagaag
     9001 taatcgggga tgacttccgt cgtggcgccc tgttcttcca gcgaacgccc ggccatgcag
     9061 cgcgcggcga tcttcgccag cggcacgccg gtcgccttcg acacgaaggg cacggtgcgc
     9121 gaggcgcgcg ggttgacctc gagcaggtag atcgtgtcgt tgccggcgtc gtcgaactgc
     9181 acggcgaact gcgtgttcat caggccgatg acattcaacg cgcgcgccag cgccaccacc
     9241 tgctcgcgca ggcgcgcctg caccgccggc gtcagcgagt acggcggcag cgagcacgag
     9301 gaatcgcccg aatgcacgcc ggcttcctcg atgtgctcca tcaccccgcc gatgacgacc
     9361 cgtcccgact tgtcggcgat cacgtcgatg tcgacctcga ccgcgttgtc gaggaagcgg
     9421 tcgagcagca ccggcgagtc gttcgacacc ttgaccgcgt cgcggatgta gcgcgacagg
     9481 tcggcgtccg aatgcacgac ctccatcgcg cggccgccga gcacgtagct cgggcgcacc
     9541 accagcgggt agccgatctc gcgggcgagc gcgagcgcct cgtccggatt gcgcgcggtt
     9601 cggttgggcg gctgggtcag cccgagcttc tcgaccagct gctggaagcg ctcgcggtcc
     9661 tcggcgaggt cgatggactc cggcgaggtg ccgatgatcg gcacgccgtt ggcttccagc
     9721 gcccgcgcga gcttgagcgg cgtctggccg ccgtactgga cgatcacacc ctcgggcttc
     9781 tcgacctcca cgatctcgag cacgtcctcg agcgtgagcg gctcgaagta caggcggtcg
     9841 gaggtgtcgt agtcggtgga cacggtttcc gggttgcagt tgaccatgat ggtctcgaac
     9901 ccgtcctcgc gcagcgccag cgccgcgtgc acgcagcagt agtcgaactc gatgccctgg
     9961 ccgatgcggt tcggcccgcc gccgagcacg atgatcttgc ggcggtcgct cgggtcggcc
    10021 tcgcactcgt cctcgtaggt cgagtacatg taggcggtgg tggtggcgaa ttccgccgcg
    10081 cacgagtcga cgcgcttgta caccgggcgc acgccgaagg cgcggcgcag gacgcgcacc
    10141 gccgactcgc tggtgcccgt caactgcgcg aggcgcgcgt cggagaagcc cttgcgcttg
    10201 agggagcgca ggcggcgggc gtcgagggcg tccaggccgg cggaggcgac ctccgcttcc
    10261 agcgcgacca gttcctcgat ctggtcgagg aaccacgggt cgacgaagga cagcgcgtgc
    10321 acgtcctcca cgctcatgcc ggcgcggaag gcatcggcga ggtggaagat gcgctccggg
    10381 cccggctcct tcacctcgcg cttgaggcgc gccagccctt cttcgtccgc caggtcgagc
    10441 ccggtcggat cgaggccgat cttgccggtc tcgaggccgc gcaatgcctt ctgcagcgac
    10501 tcctggaacg tgcggccgat cgccatcacc tcgcccaccg acttcatctg cgtggtcagg
    10561 cgcggatcgg cggcggggaa cttctcgaag gcgaagcgcg ggatcttggt gacgacgtag
    10621 tcgatgctcg gttcgaacga cgccggggtg aggccgccgg tgatctcgtt cttcagctcg
    10681 tcgagcgtgt agccgaccgc gagcttggcc gcgaccttgg cgatcgggaa gccggtcgcc
    10741 ttcgaggcga gcgccgacga acgcgacacg cgcgggttca tctcgatcac gaccacgcgg
    10801 ccgtcgtgcg cgttgatgcc gaactgaacg ttggagccgc ccgtgtccac gccgatcttg
    10861 cgcagcaccg cgatcgaggc gtcgcgcagg cgctggtatt ccttgtcggt gagcgtctgc
    10921 gccggcgcga cggtgatcga gtcgccggtg tgcacgccca tcggatcgag gttctcgatc
    10981 gagcagacga tgatgcagtt gtccgccgtg tcgcggacga cttccatctc gaattccttc
    11041 cagccgagca cggattcctc gacgaggatc tcgtgcaccg gcgagagctc gaggccgcgc
    11101 ctggcgatct cctcgaactc ctccttgttg taggcgatgc cgccgccggt gccgccgagg
    11161 gtgaagctcg ggcggatgat ggtcgggtag ccgacgcggg tctggatgtc gaccgcctgc
    11221 tcgaacgaac gcgcgacctc cgccttcggg cactccagcc cgatctcctg catcgccacg
    11281 cggaacagct cgcggtcctc ggccatgcgg atcgcctcgc gagaggcgcc gatcagctcg
    11341 accccatgct gctcgagcac gccgtggtcc gcgaggtcga gcgcgcagtt gagcgcggtc
    11401 tgcccgccca tcgtcggcag cagcgcgtcg ggcttctcct tggcgatgat cttctcgacc
    11461 gactgccagt tgatcggctc gatgtagacc gcgtccgcca tgttggggtc ggtcatgatc
    11521 gtcgcgggat tgctgttgac cagcacgacg cggaagcctt cgtcgcgcag cgccttgcac
    11581 gcctgcgcgc cggagtagtc gaactcgcag gcctggccga tgacgatcgg gccggcgccg
    11641 atgatcagga tggtcttgag gtcggtgcgc tttggcatgt cagcgcgcct ccatcgacgc
    11701 aatgaaacga tcgaagagat aactcacgtc gtgcggcccc gggctcgctt ccggatgccc
    11761 ctggaagctg aaggccggcg cgtcggacag cgcgatgccc tggttggagc cgtcgaacag
    11821 cgagcggtgg gtgacgcgtg cgttggccgg cagcgtggac tcgtccaccg cgaagccatg
    11881 gttctggctg gtgatcagca cgcgggcggt gtcgatgtcg atgaccgggt ggttggcgcc
    11941 gtggtggccg aacttcatct tcagcgtctt cgcgccgatc gccaggccga gcagctggtg
    12001 gccgaggcag atgccgtaca gcgggatctt cctggcgagg aactcgcggg tcgcggcgat
    12061 cgcgtagtcg cagggttcgg ggtcgccggg gccattggac aggaagacgc catcggggtt
    12121 gagggcgaac acctcggacg ccggcgtctg cgccggcacg acggtgaggt cgcagccgcg
    12181 ctcggcgagc atgcgcagga tgttggtctt gattccgaag tcgtaggcga cgacgtggtg
    12241 cctgccgccg ccgggcacga aggcgttgcg gtcgaggtcg agctggccgg cattccagcg
    12301 gtacgactcg cgcacgcaga cttccttcgc gaggtccatg cccttgagcc cggggaactt
    12361 gcgcgccgcc tcgagggcgg cgtcgacgtc gatcctcttt ccggaagccg cgtcggccgc
    12421 catcagcgcg ccgttctgcg cgccgcggtc gcgcagcagc cgcgtgagct tgcgggtgtc
    12481 gatgccgctg atcgcgacga cgctgcgctg gcgcagccat tcgggcagcg gcacttcgct
    12541 gcgccagctg gacgggcggc gcggcacgtc gcgcacgatc agcccggcgg cccacgcgcg
    12601 cgaggactcg tcgtcggccg cgttgcagcc ggtgttgccg atgtgggggt acgtcagggt
    12661 cacgatctgc cgcgcatagg acgggtcggt gacgatttcc tggtagccgg tcatggcggt
    12721 gttgaacacc acctcgccga ccgcgaggcc gggcgcgccg acggaatcgc cctcgaacac
    12781 ggtgccgtct tcgaggacga ggattgcggg ctgggtcacg ggcatcgcct tgcggttgcg
    12841 ccgtcgccat gctcgcctgc aggacgcagg ttgcacgaaa gcgcggactg cggttcagga
    12901 ccggtccgtg ctggcgacag ccagtgatgg ggaatcaggg cgagcgggaa ttctaccggc
    12961 gcggcgtgcg cggcgccagc gaacgttcaa gcggacgggc gttcagccaa gcaggtcggc
    13021 gagccggtat tggccgggcg cgcgaccaac cagccgcagc gcggcgtgca gcgcgccgcg
    13081 ggcgaagatc tcgcggctgg tggcgcggtg caccagttcc acccgttcac cgaggccggt
    13141 gaactggacc gtgtgctcgc cgatgatgtc gccggcgcgc agcgaggcgt agcgcgggct
    13201 cgccccgccg cgctcggccg cctggccgag ggtcagcgcg gtgcccgagg gcgcgtcctg
    13261 cttgtgcacg tggtgcgctt ccacgatgtc gcagtcccag ccgtgcaggg cgcgcgcggc
    13321 gcgttcgacc agctcggcga gcacggccac gccgaggctg aagttggacg cccacagcac
    13381 cgggatgcgt gccgcggccg cctccagcgc gtcgcgctgg gcgggttcca gcccggtggt
    13441 gccggagacg agcgcggcgc cgcgctcccg gcatagcccg aggatgccat cgaacccctg
    13501 cggcaggctg aaatcgaccg ccacatcgaa ggccggcagg ccgccgagct cggcggcggc
    13561 gaaccatggc accccgtcca ccacccgttg cgccggaacg ccgcgcgaca ccgccgcgac
    13621 cacgcggcag gcctcgggct ggtcggcgca caggcgcagc agggcctggc ccatgcgccc
    13681 actggcgccg tggatgacga aacggggagg cgtttgcatg cccgcaggct agcgaatgcc
    13741 gcccacgcgc cacaagcacg gcgcgccggg gacccgccta gaatgggccg atccgcctga
    13801 ggacgccggc atgctcgatc caggccgcct cgccgatgcc agcaccacgg tgctgcgcga
    13861 acccttcccg ctgctggtcg cccgcgacca gttgccggcc ggcgcgacgc aggagctcgt
    13921 gcgcgacttc ccgcgctacg gcagcgccgg gttctttccg tacgatccgg ccgactgtgg
    13981 tcccgccatg cacgcgctgg tcgatgcggt cacagcgccg gccttcgccg atgcgctcgg
    14041 cgcgctgctg ggcatcgagc ggctcgggca gtacccgacg ctggtgacgc tgtgccaggc
    14101 gctgaacagg cggcacggca ccatccacac ggactcggca tcgaaggtcg cgaccgcgct
    14161 tctctacctc cacgaggagt ggcccgacac cagcggcggc tgcctgcgct tcctgcgcag
    14221 catcgacgac atcgacgcgc tggtgctgcc cgaggtgcgg ccgctgtacg gcaccctcgc
    14281 cgccttccgc cgcgccggga attccttcca cggccacctc ccctacgaag gcgagcgacg
    14341 cgtcgtccag gtggcatggc tgaccagcga ggccgaaaag ctgcgcaaga cccggcgtgg
    14401 ccgcttctcg cggctcgtga agaagctgtt cgggggactg gaccgccggc tcggcgccgg
    14461 ccgcgaccgc aacgccgcgc accgcgacta gccgcgcgcc gtccgcgctg ctcccgtgac
    14521 cgcttgccgg cgacccgggg gccgccgcgg tcggcgtggc ctgttccggg cgccgcccgc
    14581 gctaaaccct gcatgccgcc gcgtccgcgc gtcacgacgc gccaccgacg caggcgtcgc
    14641 gctcttcccg ccgccggagc ccgcggtggc ggcccagcgg ccgggccggg ccgaccggcg
    14701 ccgcgaccgc cgaggatccc cgcgtgacca ccacccgtcg ccaattcctc cagggcgcgg
    14761 ccgcgctgcc gctgacgctg tcccttcccc ttgccggcgc cgccacgccg ctggtgcgcc
    14821 acgactgcgc cagtccgcag ggcatcgcca tgctccaggt cctcgcctcg gccgtgcggc
    14881 agatgcagca gcagcccgag gcgagcaccc tgggctggct ctggcagtgg tacacccact
    14941 tcgtcaacgg cgcgaccacc aagtcgagcg agatcgcgcg actgttcggc tcgggctcga
    15001 gccccggcgg c
//
LOCUS       DATIQC010000520         3553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_245236, whole genome shotgun sequence.
ACCESSION   DATIQC010000520 DATIQC010000000
VERSION     DATIQC010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245236"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..1056
                     /locus_tag="VLM17_11175"
     CDS             124..1056
                     /locus_tag="VLM17_11175"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HSR66147.1"
                     /translation="MGTERTAPDPDVYRTLVESTRAIPWSIHWDSKRFSYIGPQIEGV
                     LGWSPESWKSVEDWVARIHPEDRERVFGFCVAQSLAGVDHEADYRALREDGGYVWIRD
                     VVHVVRDAAGNVASLVGFMFDITERKRSEEQLAELQRTLERLSYQDGLTGVANRRMFD
                     TVLAREWEAARRTRQPLSLVLFDIDCFKQYNDHYGHLQGDECLRGVAQALLAASTRAQ
                     DFVGRFGGEEFVLVLPGTDAAGAVRVAERCRERILALRIAHARSGTGWVTASAGVATR
                     VAGDGDPSALVEEADRRLYQAKQAGRNRVRGEAA"
     gene            complement(1069..1416)
                     /locus_tag="VLM17_11180"
     CDS             complement(1069..1416)
                     /locus_tag="VLM17_11180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015602258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HSR66148.1"
                     /translation="MKHQGSCHCGKVSFEVEGEIDGGLACNCSICQRKGSLLWFVPRA
                     QMQLRTPEEAAATYTFNKHAIRHRFCPTCGIHPYAEADAPDGRPMAAINLRCIEGIDL
                     TSIPVREYDGRAL"
     gene            1552..2991
                     /locus_tag="VLM17_11185"
     CDS             1552..2991
                     /locus_tag="VLM17_11185"
                     /inference="COORDINATES: protein motif:HMM:NF006596.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HSR66149.1"
                     /translation="MATRSIGLLGAGLALALLAQASAAQTAPPADPTEPAFRALYQEL
                     VETNTTRSSGSCTQAAEAMRKRLVAAGIPEADTKIWAPAGRPGDGALVALLRGRDAAL
                     KPLLLLAHIDVVEAKREDWKRDPLKLVEENGFFYGRGSSDDKAMASVFTDTLVRYRQE
                     GFVPRRAIKLALTCGEETPEIFNSVHWLTKEHPDVLDAAFAINEGAGGELDKDGKPVT
                     LQLQAGEKVYQDFALSISDDGGHSSRPKKYNPIAQMGAALAREAAYNFPIAVNPVVHG
                     YFEAQAKLAQDPKVAADMRAVLRPKVDEAAVSRLWDVNPSWNSMLRTTCVPTETTGGH
                     APNALPQHVTANINCRILPGEAVADVQQALVKVLAEPKISIAPVGELGQSTTPPPLTP
                     AILDPVRAVADELWPGVAIVPTMATGATDGRYLNAAGVPTYGMSGMFTDAEGSHAHGL
                     DERIRVKSLLEGRRFLYELVKRYADAPGG"
     gene            2984..>3553
                     /locus_tag="VLM17_11190"
     CDS             2984..>3553
                     /locus_tag="VLM17_11190"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HSR66150.1"
                     /translation="MAESPVAQDASPALDLPPGEFRRLGGVLLDLAAEWLAGESDAPV
                     LRPLGGADLAALLDQPPPEQGIGEAALLAQLRERVLRHSRRNGHPRQFAHVCASPDPV
                     GALADLLASAINQNVTAWRSAPAAVALERQVLRWLDALVGFDGGGHGLLLGGGSAANL
                     HALGAAVERARQRQPGATRARMVLYTSRET"
BASE COUNT          515 a         1251 c         1312 g          475 t
ORIGIN      
        1 gtgcgcgtcg ccggccggcc gctgccggcc gtgcgcgtcg ccgccggagg cagccggccc
       61 gcgcccgccc gttcgccccg gccgcggtgg atactgcggc cacgccaccg cgacgcagcg
      121 ccaatgggca ccgaacgcac cgctcccgat cccgacgtgt accgcaccct ggtcgaatcc
      181 acccgggcga tcccgtggtc gatccactgg gacagcaagc gcttcagcta catcggcccg
      241 cagatcgagg gggtgctcgg ctggtcgccg gaaagctgga aaagcgtcga ggactgggtg
      301 gcgcgcatcc atccggagga ccgcgagcgg gtattcggct tctgcgtcgc gcagtcgctg
      361 gccggggtcg accacgaggc cgactaccgc gcgctcaggg aggacggtgg ctacgtgtgg
      421 atccgcgacg tggtgcacgt ggtgcgcgat gccgccggca acgtcgcctc gctggtcggc
      481 ttcatgttcg acatcaccga gcgcaagcgc agcgaggagc agttggcgga actgcagcgg
      541 acgctggagc ggctgtccta ccaggacggc ctgaccggtg tcgccaaccg gcgcatgttc
      601 gacaccgtgc tggcgcgcga gtgggaagcc gcgcggcgca cgcgccagcc gctgtcgctg
      661 gtgctgttcg acatcgattg cttcaagcag tacaacgacc actacggcca cctgcagggc
      721 gacgaatgcc tgcgcggcgt ggcgcaggcg ctgctggcgg cctcgacgcg cgcgcaggat
      781 ttcgtcggcc gcttcggcgg cgaggaattc gtgctggtgc tgcccggaac cgatgcggcg
      841 ggggccgtgc gcgtggccga gcgctgccgc gagcgcatcc tcgccctgcg catcgcccac
      901 gcgcgttcgg gcacgggctg ggtgacggcc agtgccggcg tggcgacgcg cgtggcaggc
      961 gacggcgatc cgtccgcgct ggtcgaggag gccgatcgcc gcctctacca ggccaagcag
     1021 gccggccgga accgggtgag gggcgaggcc gcctgagcgc ggccggcgtc agagcgcgcg
     1081 gccgtcgtac tcgcgcaccg ggatggacgt caggtcgatg ccctcgatgc agcgcaggtt
     1141 gatcgccgcc atcggccggc cgtcgggcgc atcggcttcc gcgtacggat ggatgccgca
     1201 ggtcgggcag aagcggtggc ggatggcgtg cttgttgaag gtgtaggtgg ccgccgcctc
     1261 ctcgggcgtg cgcagctgca tctgcgcgcg cggcacgaac cacagcagcg agcccttgcg
     1321 ctggcagatc gaacagttgc aggcgaggcc gccgtcgatc tcgccctcga cctcgaagga
     1381 aaccttgccg cagtggcagc tgccctggtg cttcatgcgt ggatctccgg ggtggaaggc
     1441 gaacgatgcc agtctgcagg atagtgcacg aggtcgtagc gggatgtacc gcacatggcc
     1501 cgcggcggcc gctgtgccat gatcccggcg ataccaccac ggagcaccgg catggcgaca
     1561 cgttcgatcg ggctgttggg cgctgggctg gcactggccc tgctggcgca ggcttccgcc
     1621 gcgcagacgg cgccgccggc cgaccccacc gagccggcat tccgcgcgct ctaccaggaa
     1681 ctggtcgaga ccaacaccac gcggtcctcc ggcagctgca cgcaggccgc cgaggcgatg
     1741 cgcaagcgcc tcgtcgccgc cggcatcccg gaagcggaca cgaagatctg ggcgccggcc
     1801 gggcgccccg gcgacggcgc cctggtcgcg ctgctgcgcg gccgcgacgc cgcgctcaag
     1861 ccgctgctgc tgctcgccca catcgacgtg gtcgaggcga agcgcgagga ctggaaacgc
     1921 gatccgttaa agctggtcga ggagaacggc ttcttctacg ggcgcggctc cagcgacgac
     1981 aaggcgatgg cgtcggtgtt caccgacacc ctggtgcgct accgccagga aggcttcgtg
     2041 ccgcgccgcg cgatcaagct ggcgctgacc tgcggcgagg agacgcccga gatcttcaac
     2101 agcgtgcact ggctgacgaa ggagcatccg gacgtgctcg acgcggcctt cgcgatcaac
     2161 gagggcgccg gcggcgagct ggacaaggac ggcaagcccg tcaccctgca gctgcaggcg
     2221 ggcgagaagg tctaccagga cttcgcgctg tcgatcagtg acgacggcgg ccacagctcg
     2281 cggcccaaga agtacaaccc gatcgcgcag atgggcgcgg cgctggcgcg cgaggcggcg
     2341 tacaacttcc cgatcgcggt gaacccggtg gtgcacggct acttcgaggc gcaggcgaag
     2401 ctggcgcagg acccgaaggt cgccgccgac atgcgcgcgg tgctgcgacc caaggtcgac
     2461 gaagccgccg tctcgcgcct gtgggacgtc aatccctcgt ggaacagcat gctgcgcacc
     2521 acctgcgtgc cgaccgaaac cacgggcggc catgcgccga acgcgctgcc gcagcacgtc
     2581 accgccaaca tcaactgccg catcctgccg ggcgaggcgg tcgccgacgt gcagcaggcg
     2641 ctggtgaagg tgctggccga gccgaagatc tcgatcgcgc ccgtcggcga gctcggccag
     2701 tcgaccacgc cgccgccgct gacgccggcg atcctcgatc cggtgcgcgc cgtcgccgac
     2761 gagttgtggc cgggcgtggc gatcgtgccg accatggcca ccggcgccac cgacggccgc
     2821 tacctcaacg ccgccggcgt gccgacctac ggcatgtcgg gcatgttcac cgacgccgag
     2881 ggctcgcacg cgcacggcct cgacgagcgc atccgggtga agtcgctgct cgaaggccgc
     2941 cgcttcctgt acgaactggt caagcgctac gccgacgcgc ccggtggctg agtcgccggt
     3001 ggcgcaggac gcgtcgccgg cactggacct gccgccgggc gaattccggc ggctgggcgg
     3061 cgtgctgctc gacctggcgg cggaatggct cgccggcgaa tccgacgcgc cggtgctgcg
     3121 cccgctcggc ggcgccgacc tggccgcgct gctagaccag ccgccgccgg agcagggcat
     3181 cggtgaagcg gcgctgctgg cgcagctgcg cgaacgggtg ctgcgccatt cccgtcgcaa
     3241 cggccatccg cgccagttcg cgcacgtgtg cgcctcgccc gatccggtcg gcgcgctcgc
     3301 cgacctgctg gcgtcggcca ttaaccagaa cgtcaccgcc tggcggtcgg cgccggcggc
     3361 ggtggcgctg gaacgccagg tgctgcgctg gctggacgcg ctggtcggct tcgatggcgg
     3421 cggccacggc ctgctgctcg gcggtggatc ggcggccaac ctgcatgcgc tcggcgcggc
     3481 ggtcgagcgc gcgcgccagc ggcagcccgg ggcgacgcgc gcgcggatgg tgctgtacac
     3541 ctcgcgcgag acc
//
LOCUS       DATIQC010000521         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_33675, whole genome shotgun sequence.
ACCESSION   DATIQC010000521 DATIQC010000000
VERSION     DATIQC010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33675"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..128
                     /locus_tag="VLM17_11195"
     CDS             <1..128
                     /locus_tag="VLM17_11195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR66151.1"
                     /translation="GLRAGDWVVAAGGHLLREGEVVAPVDRDNRPIASMPLKATP"
     gene            397..>2246
                     /locus_tag="VLM17_11200"
     CDS             397..>2246
                     /locus_tag="VLM17_11200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR66152.1"
                     /translation="MYAMIVLAIVGAWSYRHLGQSEDPPFTFKAMVVRTLWPGATAEE
                     VARQVTDRVEKALMTTGNYEFIRSYSRPGESQVIFMARDSMPSKDVPELWYQVRKKVG
                     DIRATLPEGTAGPFFNDEFGDTFGNIYALTGDGFDYAVMKDYADRIQLELQRVPDVGK
                     VELVGLQDEKVWIEVDNAKLATLGIPLASVQQALQQQNAVTPAGFFEGRDERIQLRVS
                     GAFDSVGAIRDFPVRAGDRTFRLGDIARVTRGFSDPAAPKMRFMGHDAIGIAVAMKDG
                     GDILKLGTTLEGEFARLQKTLPAGMQLRKVSDQPEAVRESVGEFMRVLVEAVAIVLLV
                     SFFSLGLRTGLVVAVSIPLVLAMTFAGMHYFGIGLHKISLGALVLALGLLVDDAIIAV
                     EMMAIKMEQGFSRLKAASFAWESTAFPMLTGTLVTAAGFLPIATAASSTGEYTRSLFQ
                     VVTIALVVSWIAAVLFIPYLGDRMLPDLHDTQANLSLWQRTRAFLSFPRLRGKAGMGA
                     RDAVVPPPQPSPAGGRGSEHAHDPYPRPFYRRFRALVGWCLARRWLVIGATALAFVAA
                     LALFRFVPQQFFPDSTRPELMVDMELAEGASLRATAAQAQRLEAMLRSRPG"
BASE COUNT          320 a          777 c          787 g          362 t
ORIGIN      
        1 ccggcctgcg cgccggcgac tgggtcgtcg ccgcgggcgg gcacctgttg cgcgagggcg
       61 aagtggtcgc gccggtggac cgcgacaacc gtcccattgc gtcgatgcct ttgaaggcaa
      121 cgccatgaag gtcgtgatga cgtcgccgaa gcggttcccg cgtggcacgg atgtccttcc
      181 cctgcgcgcg gggggtgagg agggccgctc catcggttcg cggcctggcg aacgccaacc
      241 ggcgttgccg cttcgccgga tagggaacgg gagcactcac gacgggctcc cccgcacccc
      301 gaccctcccc cgcatgcggg ggagggacaa tggcgggagg cgctgaccgt gcgcttcaac
      361 ctctccgaat gggcgttgcg caaccgcgcg ctggtcatgt acgcgatgat cgtgctggca
      421 atcgtcggcg cgtggtcgta ccggcacctc ggccagtcgg aagacccgcc gttcaccttc
      481 aaggcgatgg tggtgcgcac gctgtggccg ggcgcgaccg ccgaggaggt cgcacggcag
      541 gtcaccgacc gcgtcgagaa ggcgctgatg accacgggca actacgagtt catccgctcg
      601 tactcgcgtc ctggcgaatc gcaggtcatc ttcatggcgc gcgactcgat gccgtcgaag
      661 gacgtgcccg agctctggta ccaggtgcgc aagaaggtcg gcgacatccg tgcgacgctg
      721 ccggaaggca cggccggccc gttcttcaac gacgagttcg gcgatacctt cggcaacatc
      781 tacgcgctga ccggcgacgg tttcgactac gcggtcatga aggactacgc cgatcgcatc
      841 cagctggagc tgcagcgcgt gcccgacgtc ggcaaggtcg agctggtcgg cctgcaggac
      901 gagaaggtct ggatcgaggt cgacaacgcc aagctcgcga ccctcggcat cccgctcgcc
      961 tccgtgcagc aggcgctgca gcagcagaac gcggtgaccc cggccgggtt cttcgagggc
     1021 cgcgacgagc gcatccagct gcgcgtgtcc ggcgcgttcg actcggtcgg ggcgatccgc
     1081 gacttcccgg tgcgtgccgg cgaccgcacg ttccgcctcg gcgacatcgc ccgcgtcacc
     1141 cgcggcttca gcgatccggc cgcgccgaag atgcgcttca tggggcacga cgcgatcggc
     1201 atcgcggtgg cgatgaagga tggcggcgac atcctcaagc tgggcacgac gctggaaggc
     1261 gagttcgccc gcctgcagaa gacgctgccg gccggcatgc agctgcgcaa ggtcagcgac
     1321 cagccggaag ccgtgcgcga gtcggtcggc gagttcatgc gcgtgctcgt cgaggccgtc
     1381 gcgatcgtgc tgctggtgag cttcttctcg ctcggcctgc gcaccggcct cgtcgtcgcg
     1441 gtcagcatcc cgctggtgct ggcgatgacg ttcgccggca tgcactactt cggcatcggc
     1501 ctgcacaaga tctcgctcgg cgcgctcgtg ctcgcgctcg gcctgctggt cgacgacgcg
     1561 atcatcgcgg tcgagatgat ggccatcaag atggagcagg gattctcgcg gctgaaggcg
     1621 gcgagctttg cgtgggaaag caccgcgttc ccgatgctga ccggcacgct ggtgacggcg
     1681 gcgggtttcc tgccgatcgc gaccgccgca tcgagcaccg gcgagtacac ccgctcgctc
     1741 ttccaggtcg tgaccatcgc gctggtggtg tcgtggatcg cggcggtgct gttcatcccg
     1801 tacctcggcg accgcatgct gccggacctg cacgatacgc aggctaacct gtcgctctgg
     1861 cagcgcacgc gtgcgtttct ctccttcccc cgcctgcggg ggaaggccgg gatgggggca
     1921 cgcgacgccg tcgtgccccc accccaaccc tctcccgcag gcgggagagg gagtgaacac
     1981 gcccacgatc cctacccgcg cccgttctac cgccgcttcc gcgcgctggt cggctggtgc
     2041 ctcgcgcgcc gatggctggt gatcggcgca accgcgctcg cgttcgtcgc cgcgctggcg
     2101 ctgttccgct tcgtgccgca gcagttcttc cccgactcga cccggcccga gctcatggtc
     2161 gacatggagc tggccgaggg cgcctcgctg cgcgcgaccg ccgcgcaggc gcagcggctg
     2221 gaggcgatgc tgaggtcgcg cccggg
//
LOCUS       DATIQC010000522         4395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_139326, whole genome shotgun sequence.
ACCESSION   DATIQC010000522 DATIQC010000000
VERSION     DATIQC010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4395
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139326"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /gene="pyrG"
                     /locus_tag="VLM17_11205"
     CDS             <1..242
                     /gene="pyrG"
                     /locus_tag="VLM17_11205"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003481821.1"
                     /note="CTP synthase; cytidine triphosphate synthetase;
                     catalyzes the ATP-dependent amination of UTP to CTP with
                     either L-glutamine or ammonia as the source of nitrogen;
                     in Escherichia coli this enzyme forms a homotetramer;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CTP synthetase"
                     /protein_id="HSR66153.1"
                     /translation="EDAGLVISAKSMDDLLVEMVELPQARHPWFLACQAHPEFLSTPR
                     DGHPLFIGFIRAAREHKAQAGGAQESGRLLKEARA"
     gene            239..1069
                     /gene="kdsA"
                     /locus_tag="VLM17_11210"
     CDS             239..1069
                     /gene="kdsA"
                     /locus_tag="VLM17_11210"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HSR66154.1"
                     /translation="MNLCGFDVGLDRPFFLIAGPCVIESMQLQLDTAAQLKEITSALG
                     IPFIFKSSFDKANRTSGTSFRGPGVEEGLKVLAEVKRQLGVPVLTDVHEYTPLDEVVS
                     VVDVLQTPAFLCRQTDFIQNVARAGKPVNIKKGQFLSPWEMKHVTDKAKATGNTQIMA
                     CERGVSFGYNNLVSDMRALSVMRDTGCPVVFDATHSVQLPGGAGGKSGGQREFVPVLA
                     RAAIAVGISGLFMETHPDPDKALSDGPNAWPLPKMRALLETLLELDRVTKKNGFLEST
                     "
     gene            1175..2458
                     /gene="eno"
                     /locus_tag="VLM17_11215"
     CDS             1175..2458
                     /gene="eno"
                     /locus_tag="VLM17_11215"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HSR66155.1"
                     /translation="MTTIAKIHAREILDSRGNPTLEAEVTLSDGSFGRAAVPSGASTG
                     TKEAVELRDGDKTRYLGKGVRGAVENVNSAIANALHGFEGDQDALDRRLIDLDGTENK
                     GRLGANALLGVSLANAHAVAASKGMPLWQWLAQGRTPALPVPMMNIINGGAHADNNVD
                     LQEFMVLPVGFDSFSEALRCGTEIFHALKSVLKGRGLSTAVGDEGGFAPDLRSNAEAL
                     DTILEAIGKAGYKAGEDVLLGLDVASSEFFENGKYHLTGEGKRLTSEQFVDFLANWAA
                     QYPIVTIEDGMAEHDWAGWKLLTQRLGDRVQLVGDDLFVTNPRIFKQGIEEGVANAIL
                     IKVNQIGTLSETLEAIAMADAAKYAAIVSHRSGETEDTTIADIAVATTATQIKTGSLC
                     RSDRVAKYNQLLRIEEQLGAGARYAGRDAFVSLKR"
     gene            2478..2810
                     /gene="ftsB"
                     /locus_tag="VLM17_11220"
     CDS             2478..2810
                     /gene="ftsB"
                     /locus_tag="VLM17_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005992416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HSR66156.1"
                     /translation="MRGLRIIVLLLVALLAWLQYRLWAGAGSEREVAALRAQVERQAH
                     DNAGLRQRNDALAAEVEDLKSGEAAVEERARSELGMIKPGETFYRVVEAPQPAPPPAS
                     GDEGGRAP"
     gene            2807..3487
                     /gene="ispD"
                     /locus_tag="VLM17_11225"
     CDS             2807..3487
                     /gene="ispD"
                     /locus_tag="VLM17_11225"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HSR66157.1"
                     /translation="MTWAIVPAAGRGTRFGGDLPKQYIAVAGQPLIAYSLLALLAHPA
                     VEGVMVALAAGDAHWPGWTELAGKPVLTCAGGDERAYSVQAGLAALPASVRADDFVLV
                     HDAARPNLRLEDLDHLLERGRADPVGAVLATPVRDTLKRAGEDGGIDGTEPRERLWRA
                     LTPQLFRRLQLSRALESAGREGVVVTDESMAMERLGHRPLLVEGAEDNFKITTAADLA
                     RFEFTLLR"
     gene            3492..3971
                     /gene="ispF"
                     /locus_tag="VLM17_11230"
     CDS             3492..3971
                     /gene="ispF"
                     /locus_tag="VLM17_11230"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007511174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HSR66158.1"
                     /translation="MDIRIGHGFDVHAFGEGDHLMLGGVRVPHARGVLAHSDGDVVIH
                     ALCDAILGALALGDIGRHFPPSDPRWKGTDSRVFLRHCAALARERGWTLGNADVTVVC
                     ERPKVGPHADAMRALLAQDLDAAPDAVSIKATTTEALGFTGRGEGIAAQAVCLLVRA"
     gene            3968..>4395
                     /gene="truD"
                     /locus_tag="VLM17_11235"
     CDS             3968..>4395
                     /gene="truD"
                     /locus_tag="VLM17_11235"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016851082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HSR66159.1"
                     /translation="MSEALARAHGPAVLAAAIRCTPEDFRVGELDAFSPSGSGEHLLL
                     TVEKRGMNTAFAAQRIARWAGVAETAIGYAGLKDRHAVTRQRFSVWLPKKQAPDIAAL
                     DSDGLRVLGADWHARKLPRGALAGNHFELVLREIEGDRAA"
BASE COUNT          691 a         1567 c         1538 g          599 t
ORIGIN      
        1 tcgaggacgc gggcctggtc atttccgcca agtcgatgga cgaccttctg gtggaaatgg
       61 tcgagctgcc gcaggcgcgg cacccgtggt tccttgcctg ccaggcgcac ccggaattcc
      121 tgtcgacgcc gcgcgacggc cacccgctgt tcatcggctt catccgcgcg gcacgcgagc
      181 acaaggcgca ggcgggcggc gcgcaggaga gcggccggct gctgaaggaa gcgcgcgcat
      241 gaacctgtgc ggcttcgacg tcggcctcga tcggcccttc ttcctcatcg ccggaccctg
      301 cgtcatcgaa tcgatgcagc tgcagctcga taccgcggcg cagctcaagg agatcacttc
      361 cgcgctgggc attcccttca tcttcaagtc gagcttcgac aaggccaacc gcacctcggg
      421 caccagcttc cgcgggccgg gcgtggagga aggcctgaag gtgctggcgg aagtgaagcg
      481 ccagctgggc gtcccggtgc tgaccgacgt gcacgagtac accccgctcg acgaggtcgt
      541 ttcggtcgtc gacgtcctgc agacaccggc gttcctgtgc cggcagaccg acttcatcca
      601 gaacgtggcc cgcgccggca agccggtgaa catcaagaag ggccagttcc tgtcgccgtg
      661 ggagatgaag cacgtcaccg acaaggcgaa ggcgaccggc aacacgcaga tcatggcctg
      721 cgagcgcggc gtcagcttcg gctacaacaa cctcgtcagc gacatgcgcg cgctcagcgt
      781 gatgcgcgac accggctgcc cggtcgtgtt cgacgccacc cacagcgtgc agctgcccgg
      841 cggcgccggc ggcaagtccg gcggccagcg cgaattcgtg ccggtgctgg cgcgcgcggc
      901 gatcgcggtc gggatttccg gcctcttcat ggaaacgcac ccggatccgg acaaggcgct
      961 gagcgacggc cccaacgcct ggccgctgcc gaaaatgcgc gcgctgctgg aaacgctgct
     1021 cgagctggac cgcgtgacca agaagaacgg cttcctcgaa tccacgtaat ccgttcgtgg
     1081 tgagcctgtc gaaccgtggg cggatttcag ccgtccgccc ttcgacgagc tcaggacgaa
     1141 cggctgaaac cctcactcct gtcatcactc gtccatgacc accatcgcca agatccacgc
     1201 ccgcgaaatc ctcgacagcc gcggcaaccc caccctcgaa gcggaggtca ccctcagcga
     1261 cggcagcttc ggccgcgccg cggtgccctc cggcgcctcg accggcacca aggaggcggt
     1321 cgaattgcgc gacggcgaca agacccgcta cctcggcaag ggcgtgcgcg gggcggtgga
     1381 aaacgtcaac agcgcgatcg cgaacgcgtt gcacggcttc gagggcgacc aggacgcgct
     1441 cgaccgccgc ctgatcgacc tcgacggcac cgagaacaag ggccgcctgg gcgccaacgc
     1501 gctgctcggc gtgtcgctgg ccaacgcgca cgcggtcgcg gcgagcaagg gcatgccgct
     1561 gtggcagtgg ctggcgcagg gccgcacgcc ggcgctgccg gtgccgatga tgaacatcat
     1621 caacggcggc gcgcacgccg acaacaacgt cgacctgcag gaattcatgg tgctgccggt
     1681 gggcttcgat tccttctccg aagcgctgcg ctgcggcacc gagatcttcc atgcgctgaa
     1741 gtcggtgctg aagggccgcg gcctgtcgac cgccgtcggc gacgaaggcg gcttcgcccc
     1801 cgacctgcgc agcaacgcgg aggcgctcga caccatcctc gaagcgatcg gcaaggccgg
     1861 ctacaaggcc ggcgaggacg tgctgctcgg cctcgacgtc gcctccagcg agttcttcga
     1921 gaacggcaag taccacctca ccggcgaagg caaacgcctc accagcgagc agttcgtcga
     1981 cttcctcgcc aactgggccg cgcagtatcc gatcgtcacc atcgaggacg gcatggccga
     2041 gcacgactgg gccggctgga aactgctgac gcagcggctc ggcgaccggg tgcagctggt
     2101 cggcgacgac ctgttcgtca ccaacccgcg catcttcaag cagggcatcg aggaaggcgt
     2161 cgccaacgcg atcctgatca aggtcaacca gatcggcacg ctcagcgaga cgctcgaggc
     2221 catcgcgatg gccgacgcgg cgaagtacgc cgcgatcgtc tcgcatcgtt cgggcgagac
     2281 cgaggatacg accatcgccg acatcgccgt ggccaccacg gccacccaga tcaagaccgg
     2341 ttcgctgtgc cgcagcgacc gtgtcgccaa gtacaaccag ctgctgcgca tcgaggagca
     2401 gctgggcgcg ggcgcgcgtt acgccggccg cgacgccttc gtctcgctca agcgctgacc
     2461 ggatcgccga ccctgccatg cgcggcctgc ggatcatcgt gctgctgctg gtcgcgctgc
     2521 tggcgtggct gcagtaccgg ctgtgggccg gcgcgggcag cgaacgcgag gtcgccgcgt
     2581 tgcgcgccca ggtcgagcgc caggcgcacg acaacgcggg tttgcgccag cgcaacgacg
     2641 cgctggcggc cgaggtcgag gacctcaagt ccggcgaggc ggcggtggag gaacgcgcgc
     2701 gcagcgagct cggcatgatc aagccgggcg agaccttcta tcgcgtggtc gaggcgccgc
     2761 agccggcgcc gcccccggcc tccggcgacg aaggcgggcg cgcgccgtga cctgggcgat
     2821 cgtgcccgct gccggccgtg gcacccgttt cggcggcgac ctgcccaagc agtacatcgc
     2881 ggtggccggc cagccgctga tcgcctacag cctgctcgcg ctgctcgcgc atccggcggt
     2941 ggagggggtc atggtcgcgc tggcggccgg cgacgcgcac tggcccggct ggaccgaact
     3001 ggcgggcaag cccgtgctca cctgcgcggg cggcgacgag cgcgcctatt cggtgcaggc
     3061 cggcctggcc gcgctgcccg ccagcgtgcg cgccgacgac ttcgtgctgg tgcacgacgc
     3121 ggcgcggccg aacctgcgcc tggaagacct cgaccacctg ctcgaacggg gccgcgccga
     3181 cccggtcggc gcggtcctcg ccaccccggt gcgcgacacg ctgaagcgcg ccggcgagga
     3241 cggcggcatc gacggcaccg agccgcgcga acggctgtgg cgcgcgctca cgccgcaact
     3301 gttccgccgc ctgcagctca gtcgggcgct ggaatcggcc ggccgcgagg gcgtcgtcgt
     3361 caccgacgaa tcgatggcga tggagcgcct cggccaccgt ccgctgctgg tcgagggcgc
     3421 cgaggacaac ttcaagatca ccaccgccgc ggacctcgcg cggttcgagt tcaccctgct
     3481 gcgataggcg catggacatc cgcatcggcc atggcttcga cgtgcacgcc ttcggcgagg
     3541 gcgaccacct catgctcggc ggcgtgcgcg tgccgcacgc gcgcggcgtg ctcgcgcact
     3601 cggacggcga cgtggtgatc cacgcgctgt gcgacgccat cctcggcgcg ctcgcgctcg
     3661 gcgacatcgg ccggcatttc cccccgtccg atccgcgctg gaagggcacg gacagccgcg
     3721 ttttcctgcg ccactgcgcc gcgctcgcgc gcgagcgggg ctggacgctg ggcaacgccg
     3781 acgtcaccgt cgtctgcgag cggccgaagg tcgggccgca tgccgacgcg atgcgcgcgc
     3841 tgctcgcgca ggacctcgac gccgcgcccg acgcggtgag catcaaggcg acgacgaccg
     3901 aggcgctcgg cttcaccggt cgcggcgagg gcatcgccgc gcaggcggtg tgcctgctcg
     3961 tgcgggcatg agcgaggcgc tcgcgcgggc gcacgggccg gcggtgctgg cggccgcgat
     4021 ccgctgcacg cccgaggatt tccgggtcgg ggaacttgac gccttttccc ccagcggcag
     4081 tggcgagcac ctgctgctga cggtggagaa gcgcggcatg aacaccgcct tcgcggcgca
     4141 gcggattgcg cgctgggccg gcgtcgcgga gaccgccatc ggctacgcgg ggctgaagga
     4201 ccggcatgcg gtgacccgcc agcgcttcag cgtctggctg ccgaagaagc aggcgcccga
     4261 catcgccgcg ctcgactcgg acgggttgcg cgtcctcggc gccgactggc acgcgcgcaa
     4321 actgccgcgc ggcgcgctcg ccggcaacca cttcgagctg gtgctgcgcg agatcgaagg
     4381 cgaccgcgcg gcgat
//
LOCUS       DATIQC010000523         3353 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_493190, whole genome shotgun sequence.
ACCESSION   DATIQC010000523 DATIQC010000000
VERSION     DATIQC010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493190"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2853)
                     /locus_tag="VLM17_11240"
     CDS             complement(<1..2853)
                     /locus_tag="VLM17_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019184880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HSR66160.1"
                     /translation="MRLARRAPAMIRRGGLAFALAVAFAGGYAPAGWAKPAATAVDIP
                     YQQFTLANGLRVVVHEDHKAPIVAVNLWYHVGSKDEPAGRSGFAHLYEHLMFQSSEDH
                     KGEYFTPFEQAGATDQNGTTNTDRTNFFENVPTTALDMALWMESDRMGHLLGGIDQAA
                     LDEQRGVVQNEKRQDENQPYGQLEEVQSHVMYPVGHPYHHTVIGSMNDLDAASLDDVK
                     TWFLTWYGPNNAVLVLAGDIDLATARAKVAKYFGDIPAGPDMAQPKVDVAVLARPGRT
                     VLQDTVPQPLVQRQWNVAQAGTREADVLDLFAQVLGGAANSRLDTRLVHDDKLVDQVS
                     ASNSSSQVSSNFAISAMVKQGVDPAKVEAIIDEELQRLLRDGPTAAELAQAKTMYRAR
                     FIRGIERIGGFGGKADTLAACAIYEGNPGCFRDSLRAIAGATPAMVREVGRKWLGKPS
                     HTFVVMPGKRVPLAEEASAKPAPMQLPRPDPRYTTVASGVDRSRGVPAVTTFPELKFP
                     ALQHATLANGSRLILAERHQIPVVQVSYEFNGGYASDPKGGLGTASFAMGMFDEGAGD
                     LDSLAFKGKVESLGAAMGAGASLDGASVYLSALKENLAPSLQLFSTMLRQPRFDQKDI
                     DRVKAQWIAGIAQEKAQPQTAALRVLPPLLFGGGHPYGVPFTGSGTEQQIGALKRGDL
                     LAYQHAWVRPEHATVIVVGDTTLAEIVPMLDRALGDWKGEGAAQAAVAIPAVARPTRP
                     RVFLIDQPGAVQANIFAGELVPSTKDPGAVKFGMANAVIGGMFSSRLNMNLREDKHWA
                     YGAYTFAPGALGQRPWLAFAPVQIDRTADSLKEMQREIGDYASGRRPASAEEVRKVVA
                     DDIRSQPGAYETGRAVMSTIGGIVRYDRPDDWVMRRNAEVEALTPEQVAAAAKTLDAN
                     ALTWVVVGDLSTIEQPIRALDIGDVTVVDADGKPVPA"
     gene            3022..>3353
                     /locus_tag="VLM17_11245"
     CDS             3022..>3353
                     /locus_tag="VLM17_11245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR66161.1"
                     /translation="MTTRHSLVTGANRGLGLEFTRQLLARGDHVVATARHPGRATALN
                     ALAGEHPGRLNVLPLDVASGRSRNELVHELPLVLGDAPLDLLVNNAGVLHSGERWGHL
                     DEAILEDSL"
BASE COUNT          443 a         1210 c         1176 g          524 t
ORIGIN      
        1 tgccggcacc ggcttgccgt cggcgtccac cacggtcacg tcgccgatgt cgagcgcgcg
       61 gatcggctgc tcgatcgtcg acaggtcgcc gaccaccacc caggtcagcg cgttcgcgtc
      121 gagcgtcttc gcggcggcgg cgacctgctc cggggtcagc gcctcgactt cggcgttgcg
      181 gcgcatgacc cagtcgtcgg gacggtcgta gcggacgatg ccgccgatgg tcgacatcac
      241 cgcccgcccg gtttcgtagg cgccgggctg gctgcggatg tcgtcggcga ccaccttccg
      301 cacctcctcg gcgctcgccg gcctgcggcc gctggcgtag tcgccgatct cgcgctgcat
      361 ctccttcagc gagtcggcgg tcctgtcgat ctgcaccggc gcgaaggcca gccacgggcg
      421 ctggcccagc gcgccgggcg cgaacgtgta ggcaccgtag gcccaatgct tgtcctcgcg
      481 caggttcatg ttcaggcgcg aggagaacat gccgccgatc accgcgttgg ccatgccgaa
      541 cttgaccgcg cccggatcct tggtcgaagg caccagttcg ccggcgaaga tgttcgcttg
      601 caccgcgccc ggctggtcga tcaggaacac gcgtggccgg gtggggcgcg cgacggcggg
      661 gatcgcgacc gcggcctgcg ccgcgccctc gcccttccag tcgcccagcg cgcggtcgag
      721 catgggcacg atctcggcca gggtggtgtc gccgacgacg atcaccgtcg cgtgttccgg
      781 ccgcacccag gcgtgctggt aggcgagcag gtccccgcgc ttgagcgcgc cgatctgctg
      841 ctcggtgccg ctgccggtga acggcacgcc gtacgggtgt ccgccgccga acagcagcgg
      901 cggcagcacg cgcagcgccg cggtctgcgg ctgcgccttt tcctgcgcga tgcctgcgat
      961 ccactgcgcc ttgacccggt cgatgtcctt ctggtcgaag cgcggctggc gcagcatggt
     1021 cgagaacagc tgcagcgacg gcgccaggtt ctccttcagc gccgagaggt agacgctggc
     1081 gccatcgagc gacgcgcccg cgcccatcgc cgcgcccagc gattcgacct tgcccttgaa
     1141 cgccagcgaa tccaggtcgc cggcgccctc gtcgaacatg cccatggcga aggacgcggt
     1201 gcccaggccg cccttcggat cggaggcata gccgccgttg aattcgtagc tcacctgcac
     1261 caccgggatc tgatggcgct cggccaggat caggcggctg ccgttcgcca gggtcgcgtg
     1321 ctgcagggcc gggaatttca gctccgggaa cgtggtcacc gccggcacgc cccggctgcg
     1381 gtccacgccg ctggcgacgg tggtgtatct agggtccggg cggggcagct gcatcggcgc
     1441 cggcttcgcg gacgcctcct cggccagcgg cacgcgcttg cccggcatca ccacgaaggt
     1501 atggctcggc ttcccgagcc acttgcggcc gacctcgcgc accatggccg gcgtggcgcc
     1561 ggcgatggcc ctgagcgaat cgcggaaaca gccgggattg ccttcgtaga tcgcgcaggc
     1621 ggcgagggtg tcggccttgc cgccgaagcc gccgatgcgc tcgatcccgc ggatgaaacg
     1681 cgcgcggtac atcgtcttgg cctgcgccag ctcggcggcg gtcgggccgt ccctgagcag
     1741 ccgctgcagc tcctcgtcga tgatggcttc caccttcgcc gggtcgacgc cctgcttgac
     1801 catcgcgctg atcgcgaaat tcgacgagac ctggctgctg ctgttgctgg ccgacacctg
     1861 gtcgaccagc ttgtcgtcgt gcacgaggcg cgtgtccagg cgcgaattgg ccgcgccgcc
     1921 cagcacctgc gcgaacaggt cgagcacgtc cgcctcgcgc gtgccggcct gcgccacgtt
     1981 ccactgccgc tgcaccagcg gctgcggcac ggtgtcctgc agcacggtgc ggcccgggcg
     2041 cgccagcacc gccacgtcca ccttcggctg ggccatgtcc gggccggccg ggatgtcgcc
     2101 gaagtacttc gcgaccttcg cccgcgcggt cgccaggtcg atgtcgccgg ccagcaccag
     2161 caccgcgttg ttcgggccgt accaggtgag gaaccaggtc ttgacgtcgt ccagcgaggc
     2221 ggcgtcgagg tcgttcatcg agccgatgac ggtgtggtgg tacggatgcc ccaccggata
     2281 catcacgtgc gactgcactt cctcgagctg gccgtagggc tggttctcgt cctgccgctt
     2341 ctcgttctgc acgacgccgc gctgttcgtc gagcgcggcc tggtcgatgc cgccgagcag
     2401 gtggcccatg cggtcggatt ccatccacag cgccatgtcc agcgcggtgg tcggcacgtt
     2461 ctcgaagaag ttggtgcggt cggtgttggt ggtgccgttc tggtcggtgg cgccggcctg
     2521 ctcgaacggc gtgaagtatt cgcccttgtg gtcctcggac gactggaaca tcaggtgttc
     2581 gtagaggtgg gcgaaaccgc tgcgcccggc aggctcgtcc ttgctgccga cgtggtacca
     2641 gaggttgacc gcgacgatcg gcgccttgtg gtcctcgtgc accaccacgc gcaggccgtt
     2701 ggccagggtg aactgctggt acgggatgtc gaccgcggtg gcggcgggct tcgcccagcc
     2761 ggccggcgcg tagcccccgg cgaacgcgac ggcgagggcg aaggcgaggc cgccgcggcg
     2821 gatcatggcg ggggcgcgac gggcgaggcg catgggcatt cctggcagga cacgagcccc
     2881 gcatcctagc gacgccgcgc cgcgcgggca ctaggccaga ggttggcggc gcgccgcggc
     2941 aacggcccgc acgccggcgc catgggtgac cgccaccgtt cctcgaccgc ccacgggccc
     3001 ggcttgcggc aaactgcgcc gatgaccacc cgccacagcc tcgtcaccgg cgccaatcgc
     3061 ggcctcggcc tggaattcac ccgccagctg ctcgcgcgcg gcgaccacgt cgtcgccacc
     3121 gcgcgccatc ccggccgggc gacggcgctc aacgcgctcg ccggcgaaca tcccggccgc
     3181 ctcaacgtgc tgccgctgga cgtcgccagc ggcaggtcgc gcaacgaact cgtgcacgaa
     3241 ctgccgctgg tgctcggcga cgcgccgctc gacctgctgg tcaacaacgc cggcgtgctg
     3301 cattcgggcg agcgctgggg ccacctcgac gaagccatcc tcgaggacag cct
//
LOCUS       DATIQC010000524        16585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_634210, whole genome shotgun sequence.
ACCESSION   DATIQC010000524 DATIQC010000000
VERSION     DATIQC010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 16585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16585
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_634210"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..393)
                     /locus_tag="VLM17_11250"
     CDS             complement(<1..393)
                     /locus_tag="VLM17_11250"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HSR66162.1"
                     /translation="MSAQPSPVPVNVFEHRNDDAWAWAGAIAIAGALRRCLERKPRAR
                     LLLSGGTTPAPVFRALARAPLEWARVDVGLVDERWLRPDDHDSNAWLVRTQLLHDRAA
                     AARFEPLTRSGRNIEQAVADANLLARQPA"
     gene            complement(390..1388)
                     /gene="glk"
                     /locus_tag="VLM17_11255"
     CDS             complement(390..1388)
                     /gene="glk"
                     /locus_tag="VLM17_11255"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HSR66163.1"
                     /translation="MSDGLPLLLADVGGTNARFALADCGAAAPLVQASIRHYAVAEFG
                     SLADAARHYLQATGVRATRAVFSVAGPVLGDEVRMTNHPWVIGIDATRTALGLGLLRV
                     VNDFVAQAMAIRLLRQQDVRMLGAPAWQPLARDEGTCAILGPGTGLGVGALLVREGRT
                     LALATEAGHVGFAPTSDEQCALLQALARRFGHVSNERLVSGEGLVNLHQALAERDGGP
                     DARGVATPADITAGAAAGDARCRRTIALFCEVFGAVAGDTALAFGAWNGVFLSGGVVP
                     HLLDALAQPGFRQHFEAKGRYREALSRVPAAAVVHPQPGLLGAAAMACDIARGVAA"
     gene            1695..5201
                     /gene="smc"
                     /locus_tag="VLM17_11260"
     CDS             1695..5201
                     /gene="smc"
                     /locus_tag="VLM17_11260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006451583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HSR66164.1"
                     /translation="MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAV
                     RWVMGESSASRLRGDSLTDVIFSGSSARKPVSQATVELVFDNSDHAITGEFAAFNEIS
                     VKRTVSRDGQSNYYLNGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDL
                     RVYLEEAAGISKYKERRKETETRIRHTRENLERLNDLREEVGKQLEHLKRQARQAEQY
                     QALQAERKVRDAEWKALEFRGLDARLSGLREKLAQEETRLQQLIAEQREAERRIEEDR
                     ARREDASEALNKAQAEVYQVGGTLARIEQQIAHQREMATRLQRARDEAQSALAELGQH
                     ISGDQGKLDVLRNALAEAEPQLAGLRGDDQARQEALREAEAKLADWQQRWDTHTRASG
                     DAARAADVERTRVEHLDRQTLDADRRREQLHTERAGLDLESLSESLAAIRAQHDTQKA
                     SLDGLAADVEHRKRGVTELQDQQRAAQNEIAEVRKQAQAARGRLASLETLQHAALGQE
                     QGAATTWLKARGLDSAARVGETLKVEAGWENAVESALGQLIEGVLVEAPEALVDALGE
                     LGEGRLTLVAPETDGPVDAAPTSLAAKVQGPTAIRRILAKLHAAETLADARALLPSLG
                     DGESVITRNGERLGAGWVRVLRSGAAKQGALLREKEIQALRGEIDELQRREQQLNETL
                     TRLRDQALAAEQQREDAQRALYLAHRGVSELAGQLQGHQGKLDSARTRIERIDAELAQ
                     LATTLEGAREQARASRTKQEDAVARMAELEQARQALDAERRSLAEARDAARIAARESR
                     DAAHALALTVESQRAQVVALAQALERMGGQRGQLDARLGELASQLSEGDAPVQALEAE
                     RQAALEERVRTEKALAAARTALDGIDAELRGYEQTRHQRDEQALAQREKIAQRKLDQQ
                     ALDIKAGQLTEAIAHAGFVLEDVINTLDDEAEVAAWEKTVTDLDGRLRRLEPVNLAAI
                     QEHAEAAQRKEYLDAQDVDLTTALETLEDAIRKIDKETRGRFKDTFDRVNAGVQELYP
                     RLFGGGHAYLELTGEDLLDTGVAIMARPPGKRVSNISLLSGGEKAMTAVALVFAIFRL
                     NPAPFCLLDEVDAPLDEANVGRFTAMVSEMSEQVQFLFVSHNKATMEAAQQLSGVTMR
                     EPGVSRLVSVDLAEAARLAGAA"
     gene            5224..5937
                     /gene="zipA"
                     /locus_tag="VLM17_11265"
     CDS             5224..5937
                     /gene="zipA"
                     /locus_tag="VLM17_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016903841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HSR66165.1"
                     /translation="MSDVWMLRAGILVAGLLLIAAIYFFGRPRRPGQGRRVEATREPR
                     TEPTLGEQIEAGLAGAHPEDGTQAEMPLERQAAGAELGRRAHEDFDKIVTLYIAARAG
                     NVLRGPDIVVAAEKTGLAYGHMQIFHRLIEGRPERGPVFSVANIMKPGSFDMATIQSL
                     ETPAIAFFLTLPAPVPALDAWEMMQPTAERMAELLDGVLLDESRNALGRQRVQHLRDE
                     LRAYDRQREAAPVTRGTRW"
     gene            5993..6739
                     /locus_tag="VLM17_11270"
     CDS             5993..6739
                     /locus_tag="VLM17_11270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018973305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HSR66166.1"
                     /translation="MKRLDGRIALVTGASSGIGEATAVALAEAGAKVAVVARRRDRLD
                     ALAARLAPFGAEPLVLAADLLDEHAAQQVVHEAERHFGRLDILVNNAGVMYLEPVAEA
                     DLGRWRRMLELNVLSLIASTQAALAGMRARRDGHVVNVSSTAGRIANPNAAAYSATKF
                     GVVAFSEALRREVCADNIRVSVIEPGVVQTELRDHIGHAATQANLNAWADSMRQLQSE
                     DVAEAIVFCVSRPPHVNINELLMRPTDQER"
     gene            6772..8880
                     /gene="ligA"
                     /locus_tag="VLM17_11275"
     CDS             6772..8880
                     /gene="ligA"
                     /locus_tag="VLM17_11275"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HSR66167.1"
                     /translation="MSPATTPAARIADLRRRIEDANHRYYVLDDPDIPDAEYDRLLRE
                     LEALEAAHPDLVDPNSPTARVGAMPSGKFAEVVHAVPMLSLANAFADEEVAEFVARIG
                     RETGDAEPAFSVEPKLDGLAISLRYEDGVFVRGATRGDGTTGEDVTANLRTVRTVPLR
                     LRGRVPRVLEVRGEVYMPKAAFERWNEEARTRGDKPMANPRNGAAGSLRQLDPRVTAQ
                     RPLAFYAYALGEVVLDGSVDAKLPPTHSKTLAWLRELGFPVSSEVDTARGADGLLAYY
                     RRIGDKRNGLPFDIDGVVYKLDRYDQQRAMGFVSRAPRWAIAHKFPAQEEATVVESIE
                     VNVGRTGAVTPWVLMQPVQVGGVTVTRATLHNADQVARLDVRNGDTVIVRRAGDVIPE
                     VVRVIEERRPLDRRGHPLNPPYVLPTECPVCGSAIEREEGEVVARCTGGLFCPAQRVQ
                     ALFHFASRRAMDIEGLGERFIAALVEFDYVRTVADLYGLTVADFVEMKRRADEQAGAV
                     PETVKAGKIATKWAENLVAGIDASRNTTLDRVLYALGIRDVGESTAKTLAKHFGALAP
                     IMAADEELLRQVPDIGPVVAARIAHFFAEPHNREVIAALRANGVHWPEGAPRRASEGP
                     LSGQTVVLTGGLAAMSRDEAGARLEALGAKVSGSVSKKTSFVVAGEAAGSKLAKAQEL
                     GVEVWDEARLLSFLADHESA"
     gene            8877..9866
                     /gene="epmA"
                     /locus_tag="VLM17_11280"
     CDS             8877..9866
                     /gene="epmA"
                     /locus_tag="VLM17_11280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P lysine aminoacylase EpmA"
                     /protein_id="HSR66168.1"
                     /translation="MSGWRPSAGVDALRLRARLNAAIRAFFAGRDVLEVETPVLSRAG
                     NTDPNIASFHLEFSGRTDGAPRTRWLRTSPEFPLKRLLAAGVGDCYELGRVFRDGEAG
                     GRHNPEFTMLEWYRLGFDHHRLLEETAQLVQVALALVGREAGFATTSFRALYRDRLGI
                     DPMCASQEALRAALGDVVIDPDGLTRDDWLDLLMTHRLQPSFPADQLLAVYDYPASQS
                     ALARVRGPGPAQADEPPVAERFELYLGPLELANGYHELRDAREQRARFERDVALRGAR
                     GQPAPPVDEALLAALQHGLPACAGVALGVDRLLMAMLGTPRIADVLAFDFARA"
     gene            9973..10752
                     /locus_tag="VLM17_11285"
     CDS             9973..10752
                     /locus_tag="VLM17_11285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017913558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3011 domain-containing protein"
                     /protein_id="HSR66169.1"
                     /translation="MRALLVSVLVAGGLSGCVMGGPYGYGGDGGGYDPYGGYGGAYGS
                     GAQQVRCESTDGRARHCPMDVSRGVQLVRQLSDSACVRGSSWGVDRGGVWVSNGCRAD
                     FASGGYDGGYGDYGGQGGYGQTVRCESTDGRFRSCPADTRGGVTLLRQLSGSPCIQGQ
                     TWGWDQRGVWVNRGCRADFRAGGGWGGYGQGGYGPGYGTPRTVRCESSDGRPHRCDTP
                     VQRAVLQRQLSSSRCVQGQTWGWDPNGVWVAAGCRADFSVW"
     gene            10787..11848
                     /gene="mtnA"
                     /locus_tag="VLM17_11290"
     CDS             10787..11848
                     /gene="mtnA"
                     /locus_tag="VLM17_11290"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003473801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HSR66170.1"
                     /translation="MTDADIDYARYDRIRPLRWTGVALELLDQRKLPFVVEYLTCRTS
                     DDVADAIHALAVRGAPAIGIAAAWGVVLAERAIEADGASDAMAKLEPALARLNAARPT
                     AVNLAWALARMRAALARAGGDWRAVLEREALAIDSEDLAANRRMGALGAALIPPGSGV
                     LTHCNTGSLATAGFGTALGVIRAGVAQGRIDKVFAGETRPWLQGARLTVWELQQDGIP
                     ATLIADAAASHLMTTGQVQWVVVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVA
                     PSSTVDMATPSGDAIHIEERDPGELHAVGGSRTVAEGIAAWNPVFDVTPHELIDAIVT
                     EKGVVQRPDAAAMRAAFAG"
     gene            12035..14644
                     /gene="gyrA"
                     /locus_tag="VLM17_11295"
     CDS             12035..14644
                     /gene="gyrA"
                     /locus_tag="VLM17_11295"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HSR66171.1"
                     /translation="MAELAKEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFAMNELGAHSNKPYYKSARIVGDVIGKYHPHGDTAVYDTLVRMAQPFSLRYLL
                     VDGQGNFGSIDGDSAAAMRYTEARMSRLSHELMADIDKDTVDFQPNYDEKELEPTVMP
                     TRVPNLLVNGSAGIAVGMATNIPPHNLSEVVDATIALIDNPSIDVDGLMEFIPGPDFP
                     TAGIINGTAGIQLAYRTGRGRVRMRAKAEIEVNEDNGREAIAVTEIPYMVNKARLIEK
                     IAELVKEKKLEGISELRDESDKDGMRIYIEVKRGESAEVVLNNLYQQTQMETVFGVNM
                     VALVDGRPQLLNLKQMLEAFVRHRREVVTRRTIFELRKARQRAHILEGLTVALANIDE
                     MIELIKTSANPNEARDRMLARTWEPGLVGSLLAAAGSEASRPEDLPQGVGLVGGPDLK
                     GRYQLTEAQAQQILEMRLHRLTGLEQEKLTDEYRQLLETIAGLIRILENPDVLMDVIR
                     TELANLREEFGDARRSEIRASEEDLDILDLIAPEDVVVTLSHAGYAKRQPVSTYRAQR
                     RGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSTGRVFWLPVHVLPEAGPNARGRPI
                     VNWIPLEAGEQVQAVLPVREYREDQFVFFATRHGTVKKTPLTEFAFRLARGKIAINLD
                     EGDALVGAQLTDGERDIMLFASNGKAVRFDEGEVRAMGRTATGVRGMKLAQGEDVRSL
                     IVVEGEGDILTASERGYGKRTPVAEYPKKGRGTQGVIALQTSARNGQLVGAIQLSDHH
                     EVLLISDGGTLVRTRAAEIAQVGRNTQGVTLMRLAEDEKLQGIERVDASLEEDAEAAG
                     AGEMGMETPTPQG"
     gene            complement(14737..15273)
                     /locus_tag="VLM17_11300"
     CDS             complement(14737..15273)
                     /locus_tag="VLM17_11300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005994840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HSR66172.1"
                     /translation="MPPGFTDISVLRANARRDVENGAITPSYEADRDVVLELLNQALA
                     TEWVCALRYYRHFHMASGMLADAVKPEFAEHARQELEHAHKLAERIVQLGGEPDLNPD
                     TLTARSHAEYHEGTDLREMVREDLVAERIAIDSYREMINFVGDRDTTTKRILEDILAQ
                     EEEHADEFADLLNGWIGE"
     gene            complement(15312..15818)
                     /locus_tag="VLM17_11305"
     CDS             complement(15312..15818)
                     /locus_tag="VLM17_11305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019338671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HSR66173.1"
                     /translation="MTIQAGERLPETALQRIGEGVQTVDTRSLFDHRKVVIFAVPGAF
                     TPTCSERHLPGYIEHMDEFRRRGVEVACIAVNDPFVMQAWGRSQHSPADLMLLADGNG
                     DFTRALGLEMDASAYGMGKRSRRYALYAEDGLVKKVFVEAPGEFRVSSAEHMLQELPS
                     PSNAGGQP"
     gene            15970..16482
                     /locus_tag="VLM17_11310"
     CDS             15970..16482
                     /locus_tag="VLM17_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011036247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HSR66174.1"
                     /translation="MNFVRYRQWPVQGDQMQNDLRQAFDRFLGGGGLFGEGSADDSSV
                     VTSQWVPRVDVKEEKDRFVLYADLPGIDPDDIDVSMDKGILTIKGERSSESTLETDRF
                     SRVERSYGSFHRRFALPDSADPEGIQAHGRNGVLEIVIPKRPESSPRRIQVGRQEGKR
                     GTIDAPTTQQ"
BASE COUNT         2589 a         5927 c         5936 g         2133 t
ORIGIN      
        1 cgccggctgg cgggcgagca ggttggcatc ggcgaccgcc tgctcgatgt tgcggcccga
       61 gcgcgtcagc ggctcgaagc gcgccgccgc cgcgcggtcg tgcagcaact gcgtgcggac
      121 cagccaggcg ttgctgtcgt ggtcgtccgg gcgcaaccag cgctcgtcga ccaggcccac
      181 gtcgacccgc gcccactcca gcggcgcccg cgccagcgcg cggaacaccg gcgccggcgt
      241 ggtccccccg gacagcaaca ggcgcgcgcg cggcttccgc tcgaggcagc gccgcagcgc
      301 gccggcgatc gcgatcgcgc cggcccaggc ccaggcgtcg tcgttgcggt gctcgaagac
      361 attgaccggc acgggcgagg gttgcgcgct catgcagcca ccccgcgcgc gatgtcgcag
      421 gccatcgccg ccgccccgag caggcccggc tgcggatgca cgacggcggc cgccggcacc
      481 cgcgacagcg cctcgcggta gcggcccttg gcttcgaaat gctggcggaa gcccggctgc
      541 gccagcgcgt ccagcaggtg cggcaccacg ccgccgctga ggaagacgcc gttccaggcg
      601 ccgaacgcga gcgcggtgtc gcccgccacc gcgccgaaca cttcgcagaa gagcgcgatc
      661 gtgcgccggc agcgtgcgtc gccggccgcg gcgccggcgg tgatgtcggc cggcgtggcc
      721 acgcccctgg catcggggcc gccatcgcgt tcggccaggg cctggtgcag gttgaccagg
      781 ccttcgccac tgaccagccg ctcgttggaa acgtgcccga agcgacgcgc cagcgcctgc
      841 agcagcgcac attgttcgtc gctggtgggg gcgaacccga cgtgcccggc ttcggtcgcc
      901 agcgccagcg tgcggccctc gcggaccagc agcgcgccca cgcccaggcc ggtgccgggg
      961 ccgaggatcg cgcaggtgcc ctcgtcgcgc gccagcggct gccacgcggg cgcgcccagc
     1021 atgcgcacgt cctgctgccg cagcaggcgg atcgccatcg cctgggcgac gaaatcgttg
     1081 accacccgca acaagccgag gcccagggcc gtgcgcgtgg cgtcgatgcc gatcacccac
     1141 ggatggttgg tcatccgcac ctcgtcgccc agcaccggcc cggcgacgga aaacaccgcg
     1201 cgcgtcgccc ggacgccggt cgcctgcagg taatggcggg ccgcatcggc gagcgacccg
     1261 aactccgcga ccgcgtagtg gcggatgctg gcctggacca gcggcgcggc ggccccgcag
     1321 tcggccagcg cgaagcgcgc gttggtgccg ccgacgtcgg cgagcaggag cggaaggccg
     1381 tcgctcatgc gcggcgctcg acccggtggc ggcaggacag gatgggcggc atgtcgtgga
     1441 atggcgcagc gcggcgggaa ggcccgcgac ggtagccgcg cacgataaca aatgccggca
     1501 ggggcccgtc cgggccggtg tgggcccgtg gcagcggccg gcccgacggg cgcgccggcg
     1561 cctcgctata ctcgcccgga cgacgcatca gatgcgttcg tgtgtgcaag ccgcatcagt
     1621 gacttgcgcc gcaatgctca tccagtaatt caacgggcgg cgccaccggc gctgccgggg
     1681 gcccgacgac gcgcatgcgc ctgtccacga tcaagctgtc cggtttcaag tccttcgtcg
     1741 atccgaccac gctgcacctg ccgaccaaca tgaccggcat cgtcggtccc aacggctgcg
     1801 gcaagtccaa catcatcgac gccgtgcgct gggtgatggg cgaaagctcc gccagccgcc
     1861 tgcgcggcga ttcgctgacc gacgtgatct tctccggcag ctcggcgcgc aagccggtct
     1921 cgcaggccac ggtcgagctc gtcttcgaca attccgacca cgcgatcacc ggcgagttcg
     1981 ccgcgttcaa cgagatctcg gtcaagcgca ccgtcagccg cgacggccag tcgaactact
     2041 acctcaacgg caccaagtgc cgccgccgcg acatcaccga cctgttcctc ggcacgggcc
     2101 tcggcccgcg cagctactcg atcatcgagc agggcatgat cagccagatc atcgaggccc
     2161 ggcccgagga cctgcgcgtg tacctggagg aggccgccgg catctccaag tacaaggagc
     2221 ggcgcaagga gaccgagacc cgcatccgcc acacccgcga gaacctggaa cgcctcaacg
     2281 acctgcgcga ggaagtcggc aagcagctcg agcacctcaa gcgccaggcc cgccaggccg
     2341 agcagtacca ggcgctgcag gccgagcgca aggtcaggga cgcggagtgg aaggcgctgg
     2401 agttccgcgg actcgacgcg cggctctcgg gcctgcgcga gaagctggcg caggaagaga
     2461 cgcggctgca gcagctgatc gccgagcagc gcgaggcgga acgccggatc gaggaggacc
     2521 gcgcgcgccg ggaggacgcg agcgaagcgc tcaacaaggc gcaggccgag gtctaccagg
     2581 tcggcggcac gctcgcccgc atcgaacagc agatcgccca ccagcgcgag atggcgacgc
     2641 gcctgcagcg cgcgcgcgac gaggcgcaga gcgcgctggc cgagctcggc cagcacatca
     2701 gcggcgacca aggcaagctc gacgtgctgc gcaatgcgct ggccgaggcc gagccgcagc
     2761 tggcaggcct gcgcggcgac gaccaggccc gccaggaagc gctgcgcgag gccgaggcga
     2821 agctcgccga ctggcagcag cgctgggaca cccatacccg cgccagcggc gacgcggcgc
     2881 gcgccgccga cgtcgagcgc acccgcgtcg agcacctcga ccggcagacg ctggacgccg
     2941 accgccgtcg cgagcagctc cacaccgaac gcgccgggct cgacctcgag tcgctgtccg
     3001 aatcgcttgc cgcaatccgc gcgcaacacg acacgcagaa ggcctccctc gacggcctcg
     3061 ccgccgacgt cgaacaccgc aagcgcggcg tcaccgaact gcaggaccag cagcgcgcgg
     3121 cgcagaacga gatcgccgag gtccgcaagc aggcgcaggc cgcgcgcggc cgccttgcat
     3181 cgctggaaac cctgcagcac gccgcgctcg gccaggaaca gggcgctgcg accacgtggt
     3241 tgaaggcgcg cggcctggat tccgcggcgc gcgtgggaga gacgctgaag gtcgaagccg
     3301 gctgggagaa tgcggtcgaa tccgcgctcg gccagttgat cgagggcgtg ctggtcgagg
     3361 cgccggaagc actggtcgac gcgctcggcg agctcggcga aggccgcctc acgctggtgg
     3421 cgccggaaac cgacggcccg gtcgatgccg cgccgacctc gctcgccgcg aaggtgcagg
     3481 gcccgaccgc gatccgccgc atcctcgcca agctgcatgc ggccgagacg ctggccgacg
     3541 cgcgcgcact gctgccgtcg ctcggcgatg gcgaatcggt gatcacccgc aacggggagc
     3601 gcctcggcgc cggctgggtg cgggtgctgc gctcgggcgc ggccaagcag ggcgcgctgc
     3661 tgcgcgagaa ggagatccag gcgctgcgcg gcgagatcga cgaactgcag cggcgcgagc
     3721 agcagctcaa cgaaacgctg acccgcctgc gcgaccaggc gctcgccgcc gagcagcagc
     3781 gcgaggacgc gcagcgcgcg ctgtatctcg cgcatcgcgg cgtgtccgaa ctcgccggcc
     3841 agttgcaggg ccaccagggc aagctcgact ccgcgcgcac ccgcatcgag cgcatcgacg
     3901 ccgagctcgc gcagctggcg acgacgctgg aaggcgcccg cgagcaggcg cgtgcctcgc
     3961 ggacgaagca ggaggacgcc gtcgcccgca tggccgagct ggagcaggcg cggcaggcgc
     4021 tcgacgccga acgccgcagc ctggccgagg cgcgcgacgc ggcgcgcatc gccgcgcgcg
     4081 agtcgcgcga cgccgcgcat gcgctggcgc tcacggtcga atcgcagcgc gcgcaggtgg
     4141 tggcgctggc ccaggcgctg gagcggatgg gcggccagcg cggccagctc gacgcgcggc
     4201 tgggcgagct cgcctcgcag ctgtccgagg gcgatgcgcc ggtgcaggcg ctggaggccg
     4261 aacgccaggc ggcgctggaa gagcgcgtgc gcaccgagaa ggcgctcgcc gccgcgcgca
     4321 ccgcgctcga cggcatcgac gccgaactgc gcggctacga gcagacccgc caccagcgcg
     4381 acgaacaggc gctggcgcag cgcgagaaga tcgcccagcg caagctcgac cagcaggcgc
     4441 tcgacatcaa ggccggccag ctgaccgagg cgatcgcgca cgcgggcttt gtgctcgagg
     4501 acgtgatcaa caccctcgac gacgaggccg aggtggcggc ctgggaaaag accgtgaccg
     4561 acctcgacgg caggctgcgc cggctcgagc cggtcaacct cgccgcgatc caggagcacg
     4621 ccgaggccgc gcagcgcaag gagtacctcg acgcgcagga cgtcgacctc accaccgcac
     4681 tggagacgct cgaggacgcg atccgcaaga tcgacaagga aacccgcggc cgcttcaagg
     4741 acaccttcga ccgcgtcaac gcgggcgtgc aggagctcta cccgcgtctg ttcggcggcg
     4801 gccacgccta cctcgagctc accggcgagg acctgctcga caccggggtc gcgatcatgg
     4861 cgcgcccgcc cggcaagcgc gtgtccaaca tctcgctgct gtccggcggc gagaaggcga
     4921 tgaccgcggt cgcgctggtg ttcgcgatct tccgcctcaa cccggcgccg ttctgcctgc
     4981 tcgacgaggt ggacgcgccg ctggacgagg ccaacgtggg ccgcttcacc gcgatggtca
     5041 gcgagatgag cgagcaggta cagttcctgt tcgtgagcca caacaaggcg acgatggaag
     5101 ccgcgcagca gctctcgggc gtgaccatgc gcgagcccgg cgtcagccgc ctggtgtcgg
     5161 tcgacctcgc cgaggccgcg cgcctcgccg gcgccgcctg acccggtcct gcaggagacg
     5221 acgatgtccg atgtgtggat gctgcgtgcg ggaatcctgg tcgccggcct gctgctgatc
     5281 gccgcgatct atttcttcgg ccggccgcgc aggccggggc agggcaggcg ggtggaggcg
     5341 acgcgcgagc cgcgcaccga gccgacgctc ggcgagcaga tcgaggcggg cctggccggc
     5401 gcgcacccgg aggacggcac gcaggcggag atgccgctcg agcgccaggc cgcgggcgcc
     5461 gaactcggcc gccgcgcgca cgaggatttc gacaagatcg tgacgctgta catcgccgcc
     5521 cgcgccggca acgtgctgcg cgggccggac atcgtggtcg ccgccgagaa gaccggcctg
     5581 gcctacgggc acatgcagat cttccatcgc ctgatcgaag gccgtcccga gcgtggcccg
     5641 gtgttcagcg tggccaacat catgaagccg ggcagcttcg acatggcgac gatccaatcg
     5701 ctggaaacgc cggcgatcgc cttcttcctg acgttgccgg cgccggtgcc cgcgctggat
     5761 gcgtgggaga tgatgcagcc gaccgccgaa cgcatggccg agctgctcga cggcgtcctg
     5821 ctggacgaat cgcgcaacgc gctcggccgc cagcgcgtgc agcacctgcg cgacgagctg
     5881 cgtgcctacg accgccagcg cgaggccgcc cccgtcacgc gcgggacgcg ctggtaggcg
     5941 gcagactggc cgctgcgcca tcgcgcgcgg cgcttcttcc atcgaggtgg gcatgaaacg
     6001 actggacggg cgcatcgcgc tggtcaccgg cgcgtcttcc ggcatcggcg aggcgaccgc
     6061 ggtggcgctg gccgaggccg gcgcgaaggt ggcggtcgtg gcccgccgca gggaccggct
     6121 cgacgccctg gcggcgcgcc tcgcgccgtt cggcgccgaa ccgctggtgc tggccgccga
     6181 cctcctcgac gaacacgccg cgcagcaggt cgtgcacgag gccgagcgtc atttcgggcg
     6241 gctcgacatc ctcgtcaaca acgccggcgt gatgtacctc gagcccgtcg ccgaggccga
     6301 cctcggccgc tggcggcgca tgctcgagct caacgtgctc agcctgatcg cttccaccca
     6361 ggcggcgctg gcgggcatgc gcgcgcgccg cgacggccac gtcgtcaacg tgtcctcgac
     6421 cgccggccga atcgccaacc cgaacgccgc cgcgtactcg gccaccaagt tcggcgtcgt
     6481 cgccttttcc gaggcgctgc gccgcgaggt ctgcgccgac aacatccggg tcagcgtgat
     6541 cgagcccggc gtcgtgcaga ccgaactgcg cgaccacatc ggccacgcgg ccacgcaggc
     6601 caacctcaac gcctgggccg actcgatgcg ccagctgcag tcggaggacg tcgccgaggc
     6661 gatcgtgttc tgcgtcagcc gcccgccgca cgtcaacatc aacgaactcc tgatgcggcc
     6721 gaccgaccag gagcgctgac ggccccgcgc gggccgccta gaatccctgc aatgagtcca
     6781 gcgaccacgc ccgccgcccg catcgccgac ctgcgccgcc gcatcgagga cgccaaccac
     6841 cgctactacg tcctcgacga cccggacatc ccggatgccg agtacgaccg cctgctgcgc
     6901 gagctggagg cgctggaagc ggcgcatccg gacctcgtcg acccgaactc gccgaccgcg
     6961 cgagtcggcg ccatgccgtc cggcaagttc gccgaggtcg tgcatgcggt gccgatgctg
     7021 tcgttggcga acgccttcgc cgacgaggag gtggccgagt tcgtcgcgcg catcggcagg
     7081 gagacggggg acgccgaacc ggcgttctcg gtggaaccga agctcgacgg cctcgcgatc
     7141 agcctgcgct acgaggatgg cgtgttcgtg cgcggtgcga cccgtggcga cggcaccacc
     7201 ggcgaggacg tcaccgccaa ccttcggacc gtgcggaccg tgccgctgcg cctgcgcggc
     7261 agggtgccgc gggtgctcga ggttcgcggc gaggtgtaca tgcccaaggc cgcgttcgag
     7321 cgctggaacg aggaggcccg cacgcgcggc gacaagccga tggccaaccc gcgcaatggc
     7381 gcggccggct cgctgcgcca gctcgacccg cgcgtcaccg cgcagcggcc gctcgcgttc
     7441 tacgcctacg cgctgggcga agtcgtgctc gatggaagcg tcgacgcgaa gctgccgccc
     7501 acccattcga agacgctcgc ctggctgcgc gagctcggct tcccggtgag tagcgaggtc
     7561 gacaccgcgc gcggcgccga cggcctgctc gcctactacc gccgcatcgg cgacaagcgc
     7621 aacgggctgc cgttcgacat cgacggcgtc gtctacaagc tcgaccgcta cgaccagcag
     7681 cgcgcgatgg gtttcgtctc gcgcgcgccg cgctgggcga tcgcgcacaa gtttcccgca
     7741 caggaagaag cgacggtcgt cgagtcgatc gaggtcaacg tcggccgcac cggcgcggtg
     7801 acgccgtggg tgctgatgca gccggtgcag gtcggcggcg tcacggtcac gcgcgccacg
     7861 ctgcacaacg ccgaccaggt cgcgcgcctc gacgtgcgca acggcgacac ggtgatcgtg
     7921 cgccgtgccg gcgacgtgat cccggaggtc gtgcgcgtca tcgaggagcg caggccgctc
     7981 gaccggcgcg gccatccgct gaatccgccc tacgtgctgc cgaccgaatg cccggtgtgc
     8041 ggctcggcga tcgagcgcga ggagggcgag gtcgtggcgc gctgcaccgg cggcctgttc
     8101 tgcccggcgc agcgcgtgca ggcgctgttc cacttcgcct cgcggcgggc gatggacatc
     8161 gagggcctgg gcgagcgctt catcgccgcg ctggtcgagt tcgactacgt gcgcacggtc
     8221 gccgacctct acgggctcac cgtcgccgac ttcgtcgaga tgaagcggcg cgcggacgag
     8281 caggccgggg cggtgccgga gacggtgaag gccgggaaga tcgcgacgaa gtgggcggag
     8341 aacctggtcg ccggcatcga cgccagccgc aacacgacgc tagaccgcgt gctgtacgcg
     8401 ctcggcatcc gcgatgtcgg cgagagcacg gcgaagacgc tggcgaagca cttcggcgcg
     8461 ctcgctccga tcatggccgc cgacgaggaa ctcctgcgcc aggtgccgga catcggtccg
     8521 gtggtcgccg cgcgcatcgc ccacttcttc gccgagccgc acaaccgcga ggtgatcgcg
     8581 gcgctgcgcg ccaatggcgt gcactggccg gaaggcgcgc cgcggcgtgc gagcgaaggc
     8641 ccgttgtccg gccagaccgt ggtgctgacc ggcggcctcg ccgcgatgtc ccgcgacgag
     8701 gccggcgcgc gcctcgaggc gttgggggcg aaggtgtcgg gcagcgtgtc gaagaagact
     8761 tcgttcgtcg tcgccggcga ggcggcgggc agcaagcttg ccaaggcgca ggaactcggc
     8821 gtggaggtct gggacgaggc gcggttgctg tccttcctcg ccgaccacga gagcgcatga
     8881 gcggctggcg gccgtcggcg ggcgtcgacg cactgcgcct gcgtgcgcgg ctgaatgccg
     8941 ccatccgcgc gttcttcgcc ggacgcgacg tcctggaagt ggaaacgccg gtgctgtcgc
     9001 gcgccggcaa caccgatccc aacatcgcct ccttccacct cgagttctcg gggcgcaccg
     9061 acggcgcgcc gcgcacgcgc tggctgcgca cctcgccgga gttcccgctc aagcgcctgc
     9121 tcgccgcggg cgtcggcgac tgctacgaac tcgggcgcgt gttccgcgac ggggaggcag
     9181 gaggcaggca caaccccgaa ttcaccatgc tcgagtggta ccggctcggc ttcgatcacc
     9241 accggctgct ggaggaaacc gcgcagctgg tgcaggtcgc gctggccctg gtcgggcgcg
     9301 aggcaggctt cgcgacgacc agcttccgcg cgctttaccg cgaccggctc ggcatcgatc
     9361 cgatgtgcgc cagccaggag gcgttgcgcg ccgcgctcgg cgacgtggtc atcgatcccg
     9421 acggcctcac ccgggacgac tggctcgacc tgctgatgac ccatcgcctg cagccgtcct
     9481 tccccgcgga ccagctgctc gcggtttacg actatcccgc ctcgcaatcg gcgctcgcgc
     9541 gcgtccgcgg ccccgggccc gcgcaggcgg acgagccgcc ggtggccgag cgcttcgagc
     9601 tctacctcgg gccgctcgaa ctcgccaacg gctaccacga gctgcgcgac gcccgcgagc
     9661 agcgcgcgcg tttcgaacgc gacgtcgcgt tgcggggggc gcgcggccag ccggccccgc
     9721 cggtcgacga ggccttgctc gccgcgctgc agcacgggtt gccggcctgc gcgggcgtgg
     9781 cgctcggcgt cgatcgcctg ctgatggcga tgctcggcac gccgcgcatc gccgacgtgc
     9841 tggcgttcga cttcgcacgc gcctgaccgc gttctgaact ccccgcaccg accgtccggg
     9901 gggcgggcat ttttccgccg ccattcatgc aggccgaccc acagtcgctg caggcgagga
     9961 aggagaactc ccatgcgcgc gctcctggtg tccgttctgg tggccggcgg gctgtccggc
    10021 tgcgtgatgg gagggcctta cggctacggt ggcgacgggg gcggctacga cccctatggc
    10081 ggctacggcg gcgcgtacgg cagcggggcg cagcaggtgc gctgcgagtc caccgacggg
    10141 cgcgcgcgac attgcccgat ggacgtctcg cggggcgtgc agctcgtgcg ccagctctcg
    10201 gactccgcct gcgtgcgcgg cagcagctgg ggcgtcgatc gcggtggcgt gtgggtgagc
    10261 aacggttgtc gcgccgattt cgccagcggt ggctacgacg gcggctacgg cgactacggc
    10321 ggccagggcg gttacggcca gacggtgcgc tgcgaatcca ccgacggccg tttccgcagt
    10381 tgcccggccg acacccgcgg cggcgtcacg ctgctgcgcc agctgtcggg ctcgccctgc
    10441 atccagggcc agacctgggg ctgggaccag cgcggcgtgt gggtgaaccg cggttgccgt
    10501 gccgacttcc gcgcgggcgg cggctggggc ggctacggcc agggcggcta tggcccgggc
    10561 tacggcaccc cccgcaccgt gcgctgcgag tccagcgacg gccgcccgca ccgctgcgac
    10621 acgccggtgc agcgcgcggt cctgcagcgg cagttgtcga gctcgcgctg cgtccagggc
    10681 cagacctggg gctgggatcc caacggcgtg tgggtggcgg cgggctgccg cgccgacttc
    10741 tccgtgtggt gacggccgcg cgcgtcgccc ccgctaaact gcgcggatga ccgacgccga
    10801 catcgactac gcgcgctacg accgcatccg ccccctccgc tggaccggcg tggcgctgga
    10861 gctgctcgac cagcgcaagc tgcccttcgt ggtcgagtac ctcacctgcc gcacgagcga
    10921 cgacgtcgcc gatgccatcc acgcgctcgc ggtgcgcggt gcgccggcga tcggcattgc
    10981 cgccgcctgg ggcgtggtgc tggccgagcg cgcgatcgaa gccgacggcg ccagcgatgc
    11041 gatggcgaag ctcgagcccg cgctcgcccg cctcaacgcc gcccgcccga ccgcggtcaa
    11101 cctcgcctgg gcgctcgcgc gcatgcgcgc cgcactggcg cgtgccggcg gggactggcg
    11161 tgcggtgctg gagcgcgagg cgctggcgat cgacagcgag gacctcgccg ccaaccgccg
    11221 catgggcgcg ctgggcgcgg cgctcatccc gcccggcagc ggcgtgctca cccattgcaa
    11281 caccggctcg ctggcgaccg cgggcttcgg caccgcgctg ggcgtgatcc gcgcgggagt
    11341 cgcgcagggc cggatcgaca aggtattcgc cggcgagacg cggccgtggc tgcagggggc
    11401 gcgcctgacc gtgtgggaac tgcaacagga cggcattccc gcgacgctga tcgccgacgc
    11461 cgcggcctcg cacctgatga cgaccggcca ggtccagtgg gtggtggtgg gtgccgaccg
    11521 catctgcgcc aacggcgaca ccgccaacaa gatcggcacc taccagctcg cgatcgccgc
    11581 gcgccaccat ggggtgaaat tcatggtggt cgccccctcg tcgaccgtcg acatggccac
    11641 gccatccggc gatgccatcc acatcgagga gcgcgatccg ggcgaactgc acgcggtggg
    11701 cggcagccgc accgtggccg aggggatcgc cgcctggaac ccggtgttcg acgtcacccc
    11761 gcacgaactg atcgatgcga tcgtgaccga aaagggcgtc gtccagcgcc cggatgccgc
    11821 ggccatgcgg gcggccttcg cgggctgacg gccgacctgg gcccgggcgg cgaaaacaag
    11881 ccctaaccca ttgtttccac gcgggaatcg ggcgccgaaa aagtccccgc gcgtggtaca
    11941 atttcacgtc ggtaaatccc gcccattcca gctccgcgga cgcctcgtcc gcagccggcc
    12001 tgcggcccgc aattagccag caccaggaag ccagatggcc gaactcgcca aggaaatcat
    12061 cccggtcaat ctcgaggacg agatgcgccg cagctacctc gattacgcca tgagcgtgat
    12121 cgtggggcgc gcgcttccgg atgtccgcga cggcctcaag ccggtgcacc gccgcgtgct
    12181 gttcgcgatg aacgaactcg gcgcgcacag caacaagccg tactacaagt cggcgcgcat
    12241 cgtcggcgac gtgatcggca agtaccaccc gcatggcgac acggcggtgt acgacaccct
    12301 ggtgcgcatg gcgcagccgt tctcgctgcg ctacctgctg gtcgacggac agggcaactt
    12361 cggctcgatc gacggcgact ccgcggcggc gatgcgttac accgaggcgc gcatgtcgcg
    12421 cctgtcgcac gagctgatgg cggacatcga caaggacacc gtcgatttcc aacccaacta
    12481 cgacgagaag gaactcgaac ccacggtcat gccgacgcgg gtgccgaacc tgctcgtcaa
    12541 cgggtccgcc ggcatcgcgg tcggcatggc gaccaacatc ccgccgcaca acctgtccga
    12601 ggtcgtcgac gccaccatcg cgctgatcga caatccgtcg atcgacgtcg atggcctgat
    12661 ggagttcatc ccgggcccgg atttcccgac ggcgggcatc atcaacggca cggccggcat
    12721 ccagctcgcc tatcgcaccg gtcgtggccg cgtgcgcatg cgcgccaagg cggagatcga
    12781 ggtcaacgag gacaacgggc gtgaggcgat cgccgtcaca gaaatcccgt acatggtcaa
    12841 caaggcgcgg ctgatcgaga agatcgccga gctggtcaag gaaaagaagc tcgagggcat
    12901 cagcgagctg cgcgacgagt ccgacaagga cggcatgcgc atctacatcg aggtcaagcg
    12961 cggcgagtcg gccgaggtcg tgctcaacaa cctctaccag cagacgcaga tggagaccgt
    13021 gttcggcgtc aacatggtcg ccctcgtcga cggtcgcccg cagctgctca acctcaagca
    13081 gatgctggaa gccttcgtgc gccaccgccg cgaggtggtg acccgccgca ccatcttcga
    13141 gctgcgcaag gcccgccagc gcgcccatat cctcgaaggc ctgaccgtcg cgctcgccaa
    13201 catcgacgag atgatcgagc tgatcaagac gtcggcgaat cccaacgagg cgcgcgaccg
    13261 catgctcgcg cgcacctggg aaccgggcct ggtcggttcg ctgctcgccg ccgccggcag
    13321 cgaggcctcg cgcccggagg acctgccgca gggcgtgggc ctggtcggcg gccctgatct
    13381 caaaggcaga taccagctga ccgaggcgca ggcgcagcag atcctcgaga tgcgcctgca
    13441 ccgcctgacc ggcctcgagc aggagaagct gaccgacgaa taccgccagc tgctcgagac
    13501 catcgccggg ctgatccgca tcctcgagaa ccccgacgtc ctgatggatg tcatccgcac
    13561 cgaactcgcc aacctcaggg aggagttcgg cgacgcgcgc cgcagcgaga tccgcgccag
    13621 cgaggaagac ctcgacatcc tcgacctgat cgcgccggag gacgtggtgg tgaccctctc
    13681 gcacgcaggc tatgccaagc gccagccggt cagcacgtat cgcgcacaga ggcggggcgg
    13741 ccgcgggcgc tccgcggcgg cgaccaagga agaggacttc atcgaccagc tgtggctggt
    13801 caacacgcac gacacgctgc tcaccttcac cagcaccggt cgggtgttct ggctgccggt
    13861 gcacgtgctg ccggaggccg ggccgaacgc gcgcggccgc ccgatcgtca actggatccc
    13921 gctggaagcc ggcgagcagg tgcaggccgt gctgccggtg cgcgagtacc gcgaggacca
    13981 gttcgtgttc ttcgccaccc gccacggcac ggtcaagaag accccgctca ccgagttcgc
    14041 cttccgcctg gcgcgcggca agatcgcgat caacctcgac gagggcgatg cgctggtcgg
    14101 cgcgcagctc accgatggcg agcgcgacat catgctgttc gccagcaacg gcaaggcggt
    14161 gcgcttcgac gagggcgagg tgcgcgccat gggccgcacc gccaccggcg tgcgcggcat
    14221 gaagctcgcg cagggcgagg acgtgcgcag cctgatcgtg gtggaaggcg agggcgacat
    14281 cctcaccgcc agcgagcgcg gctacggcaa gcgcacgccg gtcgccgagt acccgaagaa
    14341 ggggcgcggc acgcagggcg tgatcgcgct gcagaccagc gcgcgcaacg gccagctggt
    14401 cggcgcgatc cagctcagcg accaccacga ggtgctgctc atctcggacg gcggcacgct
    14461 ggtccgcacg cgcgccgccg agatcgccca ggtcggccgc aacacccagg gcgtgaccct
    14521 gatgcgcctg gccgaggacg agaagctgca gggcatcgag cgcgtcgacg cctcgctgga
    14581 agaggacgcc gaggccgccg gcgccggcga gatgggcatg gagacgccga cgccgcaagg
    14641 ctgatccggt ctcccggcga gcgccgggat gcgcggttcc acgaaaaggg cggccctcgg
    14701 gccgcccttt ctttgcacgc atcgcctccg taccgactac tcgccgatcc agccgttgag
    14761 caggtcggcg aactcgtcgg cgtgttcctc ctcctgcgcg aggatgtcct cgaggatgcg
    14821 cttggtggtg gtgtcgcgat cgccgacgaa gttgatcatc tcgcggtagc tgtcgatggc
    14881 gatgcgctcg gcgaccaggt cctcgcgcac catctcgcgc aggtcggtgc cttcgtggta
    14941 ctcggcgtgc gagcgcgcgg tcagcgtgtc gggattgagg tcgggttcgc cgccgagctg
    15001 gacgatgcgc tcggcgagct tgtgcgcgtg ttcgagctcc tgccgggcgt gctcggcgaa
    15061 ttccggcttc accgcatcgg ccagcatccc cgaggccatg tggaagtggc ggtagtagcg
    15121 cagcgcgcac acccattcgg tggccagcgc ctggttgagc agctccagca cgacgtcgcg
    15181 gtcggcctcg tagctcggcg tgatcgcgcc gttctcgacg tcgcggcgcg cgttggcgcg
    15241 cagcaccgag atgtcggtga agcccggcgg cagcggacgc ggggtcgacg gcgtcgtggg
    15301 cgagggggaa ttcacggttg acctccggcg ttggatgggg acggcagttc ctgcagcatg
    15361 tgctcggccg aggacacccg gaactcgccc ggcgcctcga cgaagacctt cttcaccagg
    15421 ccatcctcgg cgtacagcgc atagcggcgc gatcgcttgc ccatgccgta ggcgctggca
    15481 tccatctcca ggccgagcgc gcgggtgaag tcgccgttgc cgtcggcgag cagcatcagg
    15541 tcggccgggg aatgctggct gcgcccccaa gcctgcatca cgaacgggtc gttgacggcg
    15601 atgcaggcga cttcgacccc gcggcggcgg aactcgtcca tgtgctcgat gtagccgggc
    15661 aggtggcgct ccgaacaggt cggggtgaag gcgccgggca ccgcgaagat gaccaccttg
    15721 cggtggtcga acagcgagcg ggtatcgacg gtctgcacgc cttcgccgat gcgctgcagc
    15781 gcggtctcgg gcaggcgttc gccggcttgg atggtcatcg gcgatgggct ccgggaggtg
    15841 aaagccgagt gtatgcccgc gccgttcgcc gcccggtgaa ggccggccct tgaaatccgc
    15901 gcgcggcgcg ccgacctgca ggaagggcgg cgcgcgggcg ccgcgcccca gacagaggag
    15961 gaaagccgca tgaatttcgt ccgttatcgc cagtggcccg tgcagggcga ccagatgcag
    16021 aacgacctgc gccaggcctt cgaccgcttc ctcggcggcg gtggcctgtt cggcgagggc
    16081 tcggccgacg acagctcggt ggtgaccagc cagtgggtgc cccgggtgga cgtcaaggag
    16141 gagaaggatc gcttcgtgct ttacgcggac ctgcccggga tcgaccccga cgacatcgac
    16201 gtgtcgatgg acaagggcat cctgaccatc aagggcgaac gcagcagcga gagcacgctg
    16261 gaaaccgacc gcttctctcg cgtcgagcgc agctacggca gcttccaccg ccgcttcgcg
    16321 ctgcccgaca gcgccgatcc ggaagggatc caggcgcacg ggcgcaacgg cgtgctcgag
    16381 atcgtcatcc cgaagcggcc cgaatcgtcg ccacggcgca tccaggtcgg ccgccaggaa
    16441 ggcaagcgcg gaaccatcga cgcaccgacc acccagcagt gagcgcggcc tcgcgcgcct
    16501 gcggtagcct tccggcctga ccggccggaa ggccgcccgc gcgcgggctc gcgcagcaca
    16561 gggatacgcg atgcgattca aggac
//
LOCUS       DATIQC010000525         6263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_281501, whole genome shotgun sequence.
ACCESSION   DATIQC010000525 DATIQC010000000
VERSION     DATIQC010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6263
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281501"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..338
                     /gene="rpsO"
                     /locus_tag="VLM17_11315"
     CDS             78..338
                     /gene="rpsO"
                     /locus_tag="VLM17_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004916774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HSR66175.1"
                     /translation="MSIDSGKIIQEYARGTNDTGSPEVQVALLSARIAQLTEHFKTHK
                     QDHHSRRGLLKMVNQRRSLLDYLHRKDAERYKALIEKLGLRR"
     gene            546..2654
                     /gene="pnp"
                     /locus_tag="VLM17_11320"
     CDS             546..2654
                     /gene="pnp"
                     /locus_tag="VLM17_11320"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011259733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HSR66176.1"
                     /translation="MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAV
                     AAKSAREGQDFFPLTVDYQEKFYAGGRIPGGFFKREGRPTEKETLISRLIDRPIRPLF
                     PEDYRNEIQIIATVMSLNPEIDGDVPALIGASAALALAGTPFQGPIGAAKVGYKDGQY
                     ILNPSASELATSDLELVVAGTSNAVLMVESEAKMLSEEVMLGAVMFGHREMQKAINAI
                     NELTAEAGTKPSSWVAPSKHEGLIGAIREAAGAPLAQAFQIRDKLQRRDAIAAIRKDV
                     QVALAGRAEAEGWPMAEFAKEFGELEYRTMRDAVLDTKVRIDGRALDTVRPITSMVGV
                     LPRTHGSSMFTRGETQAIVVTTLGTARDGQIIDAVAGEYKEHFLFHYNFPPYSVGECG
                     RFGAPKRREIGHGRLAKRGVLAVMPTMEEFPYTVRVVSEITESNGSSSMASVCGSSMA
                     LMDAGVPIKAPVAGIAMGLVKEDDRFVVLSDILGDEDHLGDMDFKVAGSADGISALQM
                     DIKIQGITEEIMQVALKQAKAGRLHILGEMQKAISAARPELSEFAPRLLTIKIHPDKI
                     REVIGKGGSVIQAITKETGTQIDIQDDGTITIASVNAAAGQAAKARIEQITSDVEPGR
                     IYQGKVAKLMDFGAFVTISPGKDGLVHVSQISNERVEKVSDVLKEGDIVKVKVLEVDK
                     QGRIRLSMKAVEEGEGLPAA"
     gene            2793..3680
                     /locus_tag="VLM17_11325"
     CDS             2793..3680
                     /locus_tag="VLM17_11325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66177.1"
                     /translation="MRARAWLLILLLPAAPVPAQSIFRANEILDADRPEAWAMDYFAA
                     SSLFTATGATPALAPGEWSLAIDLAQVPRLDGRQQVVGFNGVKREDLNRSPVFGRARA
                     WIGLPAGWVGEIGYTPPLRLHDTQARHFVALALGYRLLERGRLGLSARILGQHGAVEG
                     DITCPARLAGVDDIRLDPYGCRAPSEDVASLNYYGADLTAAWTTGGWQAYANAGVLRT
                     ETQVQVDALTFDQRDRSRLVAHDVLPFVAAGLRHGLGAHFDWGAEVLFVPLRVRRTAT
                     GPSERDDFLGLRLQLRYRP"
     gene            3873..5702
                     /locus_tag="VLM17_11330"
     CDS             3873..5702
                     /locus_tag="VLM17_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012480581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HSR66178.1"
                     /translation="MTPDITGKKYEQPAPQRDFERREVMIPMRDGVKLFTVIMIPKGA
                     HDAPMLFTRTPYNAAKRTMRTPGATRLVDALSQADTVFAQDGYIRVYQDVRGKYGSQG
                     DYVMTRPPRGPLNRTKVDHTTDAWDSIDWLVRHVPESNGRVGMLGSSYEGFTVVMALL
                     DPHPALKVAAPESPMIDGWKGDDWFQNGAYRQVNVDYIVGQTSERGAGGEIAMPTTDD
                     YTSFLRLGSAEGFARYAGLDRFPFWQKVTQHPAYDAFWQAQALDQLLAKLPGIGVPTM
                     WEQGLWDQEDMYGANHSYAVLEPKDGDNTRNFLVIGPWRHSGANYDGSSLGALKFNGD
                     TALQWRRDVLKPFFDQYLKDGAPKADTPPVMVYNSGLQRWDRYARWPQSCDSGCPATS
                     KPLYLAADETLQWQRPADGAAAYVSDPARPVPFVPRPVRMGDRATWTTWLVHDQRFVD
                     GRPDVLSYTTAPLEAPLRLAGVPVANLDASTTGSDSDWVVKLIDVYPDQYPDDPDMAG
                     YQLPVALTIFRGRYREGFDRPQALVPGVAAHYRFDLPNVNHVFLPGHRVMVQVQSTLF
                     PLYDRNPQTFVPNVFLAAPSDYRRATQQVLSSSFIDLPVAPPR"
     gene            complement(5712..>6263)
                     /locus_tag="VLM17_11335"
     CDS             complement(5712..>6263)
                     /locus_tag="VLM17_11335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhN family protein"
                     /protein_id="HSR66179.1"
                     /translation="YLLLAGILFARRTLPLPPGWRLGVDGLQVLGFAMLGALAAYLVA
                     CRLSHGRIFHLRGHHFRLPSLPLALLQVAMAAGNWMLMAGIVYALLPGAVGYPEVLAV
                     LLLGAVAAAAVHMPAGIGVLEAVFAALLDGRLPRPEVLAAVLTYRAFYYLLPLAVALV
                     VYATLETRRQRQGGRRAVRGGGS"
BASE COUNT         1046 a         2220 c         2154 g          843 t
ORIGIN      
        1 acgcggcggg cttggcggtg cgccccgtcc tgtcgacgcc ggcgttcctg ccgaccacgc
       61 atctaccgag aaaccccatg tccatcgaca gcggcaagat catccaggaa tacgcccgtg
      121 gcaccaacga caccggttcg ccggaagtcc aggtcgccct gctctcggcg cgcatcgcgc
      181 agctgaccga gcacttcaag acccacaagc aggaccacca cagccggcgc ggcctgctga
      241 agatggtgaa ccagcgccgc agcctgctcg actacctgca ccgcaaggat gccgagcgtt
      301 acaaggccct gatcgagaag ctcggcctgc gtcgctaagc aagacaccga ccgcggcgca
      361 gcaatgcgcc gcggtttttt tctgctgtca tcccgagctt ggcgagggat ccgcttttcc
      421 ccggcgggga cgagcacaga gcggatcccc cgctgcgttc ggaatgacag cgcatccggc
      481 cttcaccggc caaccgcacg ccgcaagggc ggcgcgcgga acgcatgaga accgaggatt
      541 ccaacgtggc aaaaatcacc aagaccttcc agtacggcaa gcacaccgtg acgctggaga
      601 ccggcgaagt cgcccgtcag gccagcggcg ccgtcatcgt caagatggac gacaccgtac
      661 tgctggtcac cgcggtcgcc gccaagagcg cgcgcgaagg gcaggacttc ttcccgctca
      721 ccgtcgacta ccaggagaag ttctacgccg gcggccgcat ccccggcggc ttcttcaagc
      781 gcgagggccg cccgacggag aaggagacgc tgatctcccg cctgatcgac cgcccgatcc
      841 gcccgctgtt ccccgaggac taccggaacg agatccagat catcgccacg gtgatgtcgc
      901 tgaatccgga gatcgacggc gacgtcccgg ccctgatcgg cgcgtccgcc gcgctggcgc
      961 tggccggcac cccgttccag ggcccgatcg gcgccgccaa ggtcggctac aaggacggcc
     1021 agtacatcct caacccgagc gccagcgaac tcgccaccag cgatctcgag ctcgtcgtcg
     1081 ccggcacctc caacgccgtg ctgatggtcg agtccgaagc gaagatgctg tcggaagagg
     1141 tgatgctcgg cgcggtgatg ttcggccatc gcgagatgca gaaggccatc aacgcgatca
     1201 acgagctgac cgccgaggcc ggcaccaagc cgtcgagctg ggtcgcgccg tcgaagcacg
     1261 agggcctgat cggcgcgatc agggaagccg ccggcgcgcc gctcgcgcag gccttccaga
     1321 tccgcgacaa gctgcagcgc cgcgatgcga tcgccgcgat ccgcaaggac gtccaggtcg
     1381 ccctggccgg ccgcgccgag gccgagggct ggccgatggc cgagttcgcc aaggagttcg
     1441 gcgagctcga gtaccgcacc atgcgcgacg ccgtgctcga caccaaggtc cgcatcgacg
     1501 gccgcgcgct cgacaccgtg cgcccgatca cctcgatggt cggcgtgttg ccgcgcacgc
     1561 acggttcctc gatgttcacc cgcggcgaaa cgcaggcgat cgtggtcacc acgctcggca
     1621 ccgcgcgcga cggccagatc atcgacgccg tcgccggcga gtacaaggaa cacttcctgt
     1681 tccactacaa cttcccgccc tactcggtgg gcgagtgcgg ccgcttcggc gcgcccaagc
     1741 gccgcgagat cggccacggc cgcctcgcca agcgcggcgt gctggccgtg atgccgacga
     1801 tggaggagtt cccgtacacc gtgcgcgtgg tgtccgagat caccgagtcg aacggttcct
     1861 cgtcgatggc gtcggtgtgc ggctcgtcga tggcgctgat ggacgcgggc gtgccgatca
     1921 aggcgccggt cgccggcatc gcgatgggcc tggtgaagga ggacgatcgc ttcgtcgtgc
     1981 tgtcggacat cctgggcgac gaggatcacc tcggcgacat ggacttcaag gtggccggta
     2041 gcgccgacgg catctccgcg ctgcagatgg acatcaagat ccagggcatc accgaggaga
     2101 tcatgcaggt cgcgctgaag caggccaagg ccggccgcct gcacatcctc ggcgaaatgc
     2161 agaaggcgat cagcgcggcg cgcccggagc tgagcgagtt cgccccgcgc ctgctcacca
     2221 tcaagatcca tccggacaag atccgcgagg tgatcggcaa gggtggctcg gtgatccagg
     2281 cgatcaccaa ggaaaccggc acccagatcg acatccagga cgacggcacg atcaccatcg
     2341 cctcggtcaa cgccgccgcc ggccaggccg cgaaggcgcg catcgagcag atcacctccg
     2401 acgtcgagcc gggccgcatc taccagggca aggtcgccaa gctgatggac ttcggcgcgt
     2461 tcgtgaccat ctcccccggc aaggacgggc tggtgcacgt gtcgcagatc tccaacgagc
     2521 gcgtcgagaa ggtcagcgac gtcctcaagg aaggcgacat cgtcaaggtc aaggtgctcg
     2581 aggtcgacaa gcagggccgc atccgcctgt cgatgaaggc ggtcgaggaa ggcgagggcc
     2641 tgccggcggc gtgatcgacg ccagcgggct gcaggaaaaa agcgggcgaa tgcccgcttt
     2701 tttcttggga gcacggttga ccggaggacg ggcattgaac cgtcgggccc ggcaggcgcc
     2761 tccagcctgc ggatcccgcg atggaggtgc ggatgcgcgc cagggcctgg cttctgatcc
     2821 tgctgctgcc ggccgcgccc gtaccggcgc agtcgatctt ccgcgccaac gagatcctcg
     2881 atgcggatcg cccggaagcc tgggcgatgg actacttcgc cgccagcagc ctgttcaccg
     2941 cgaccggcgc gacgccggcg ctggccccgg gcgagtggag cctcgccatc gacctggcgc
     3001 aggtgccgcg gctggacggg cggcagcagg tcgtcggctt caacggggtg aagcgcgagg
     3061 acctcaaccg ctccccggtg ttcggccgcg cgcgcgcctg gatcgggctg ccggccggct
     3121 gggtcgggga aatcggctat acgccgccgc tgcgcctgca cgacacccag gcgcggcatt
     3181 tcgtcgcgct ggccctcggg taccggctgc tcgaacgtgg ccggctgggc ctgtcggcgc
     3241 gcatcctcgg ccagcacggc gcggtggaag gcgacatcac ctgtcccgcg cgcctcgccg
     3301 gcgtcgacga catccgcctc gacccctatg gctgccgggc gccgtcggag gacgtggcgt
     3361 cgctgaacta ttacggcgcc gacctcaccg cggcgtggac caccggtggg tggcaggcct
     3421 acgcgaacgc cggcgtgctg cgcaccgaaa cccaggtgca ggtggacgcg ctcaccttcg
     3481 accagcgcga ccgctcgcgc ctggtcgcgc atgacgtgct gccgttcgtc gccgccggcc
     3541 tgcggcatgg cctcggcgcg catttcgact ggggcgcgga ggtcctgttc gtgccgctgc
     3601 gcgtgcgccg caccgcgacc gggccgagcg aacgcgacga tttcctcggc ttgcgcctgc
     3661 aactgcgcta ccgtccctga gtcgtccgcg acgcgcgggc aggcggcggg cgccggcatg
     3721 actttcgtca ctgctggccc acgcggccct cgcctagcgt cggcggatca acccgggaga
     3781 acggcatggc ggtgatcggc aggcagggac tggcggcgtg ggtgttggct gcgttggtgg
     3841 cgccgggaat cgcgtccggg cagaccgcgc cgatgacgcc ggacatcacc gggaaaaagt
     3901 acgagcagcc cgcgccgcag cgcgacttcg agcggcgcga ggtgatgatc ccgatgcgcg
     3961 acggggtgaa gctgttcacc gtcatcatga tcccgaaggg cgcgcacgac gcgccgatgc
     4021 tgttcacccg cacgccctac aacgcggcca agcggacgat gcgcacgccg ggcgcgacgc
     4081 ggctggtgga tgcgctgtcg caggccgaca ccgtgttcgc gcaggacggc tacatccgcg
     4141 tctaccagga cgtgcgcggc aagtacggct cccagggcga ttacgtgatg acgcgcccgc
     4201 cgcgcgggcc gctcaaccgg acgaaggtcg accacacgac cgacgcgtgg gattcgatcg
     4261 actggctggt caggcacgtg cccgaatcga acggccgggt gggcatgctc ggctcgtcct
     4321 acgagggctt caccgtggtg atggccctgc tcgatccgca ccccgcgctc aaggtcgccg
     4381 cgccggaaag tccgatgatc gacggctgga agggcgacga ctggttccag aacggcgcct
     4441 atcgccaggt caacgtcgac tacatcgtcg gccagaccag cgagcgcggc gcgggcggcg
     4501 aaatcgcgat gccgaccacc gacgactaca cgagcttcct gcggctcggc tcggccgagg
     4561 gcttcgcgcg ctacgccggc ctggaccggt tcccgttctg gcagaaggtc acccagcacc
     4621 ccgcgtacga cgcgttctgg caggcgcagg cgctggacca gctgctggcg aagctgccgg
     4681 ggatcggcgt acccaccatg tgggagcagg gcctgtggga ccaggaggac atgtacggcg
     4741 ccaaccacag ctacgccgtg ctggaaccga aggacggcga caacacgcgc aacttcctcg
     4801 tcatcggccc gtggcggcac agcggcgcca attacgacgg ctcctcgctg ggcgcgctga
     4861 agttcaacgg cgacaccgcg ctgcagtggc ggcgcgacgt gctgaaaccc ttcttcgacc
     4921 agtacctcaa ggacggcgcg ccgaaggcgg acacgccgcc ggtgatggtc tacaactccg
     4981 gcctgcagcg ttgggacagg tacgcgcgct ggccgcagag ctgcgacagc ggctgcccgg
     5041 cgacgtcgaa gccgctctac ctcgccgccg acgaaaccct tcagtggcag cgcccggccg
     5101 acggcgccgc cgcgtacgtg tccgatccgg ccaggcccgt gccgttcgtg ccgcgcccgg
     5161 tgcgcatggg cgaccgcgcg acgtggacga cgtggctggt gcacgaccag cgcttcgtcg
     5221 acggccgccc ggacgtgctc agctacacga ccgcgccgct ggaggcgccg ctgcgcctgg
     5281 ccggcgtgcc ggtcgccaac ctcgacgcct ccaccaccgg cagcgacagc gactgggtgg
     5341 tcaagctcat cgacgtctat cccgaccagt atcccgacga tccggacatg gccggctacc
     5401 agctgccggt ggcgctgacg atcttccgcg gccgctatcg cgagggcttc gaccggccgc
     5461 aggcgctggt gccgggcgtg gccgcgcact accgcttcga cctgccgaac gtgaaccacg
     5521 tcttcctgcc cggccaccgc gtgatggtgc aggtgcagtc gacgctgttc ccgctctacg
     5581 accgcaaccc gcagaccttc gtgccgaacg tcttcctggc cgcgccgagc gactaccgca
     5641 gggcgacgca gcaggtcctg tcgagcagct tcatcgacct gccggtggcg ccgccgcggt
     5701 agcgccgtcc gtcaggagcc gccgccccgc accgcgcggc ggcccccctg ccgttgccgg
     5761 cgcgtttcca gcgtcgcgta cacgaccagc gccaccgcca gcggcagcag gtagtagaag
     5821 gcgcgatagg tgagcaccgc ggcgaggacc tcggggcggg gcaggcgacc gtcgagcagc
     5881 gcggcgaaga ccgcctcgag cacgccgatg ccggccggca tgtgcacggc cgccgcggcg
     5941 accgcgccga gcagcagcac ggcgaggacc tccggatagc cgacggcgcc cggcagcagc
     6001 gcgtacacga tgccggccat cagcatccag ttgccggccg ccatcgccac ctgcagcaac
     6061 gccagcggca gcgagggcag gcggaagtgg tggccgcgca ggtggaagat ccgtccgtgg
     6121 ctgagccggc aggcgacgag gtaggccgcc agcgcgccca gcatcgcgaa accgagcacc
     6181 tgcagtccgt ccacgcccag ccgccagccc ggcggcaggg ggagcgtgcg ccgggcgaac
     6241 aggatgcccg cgagcagcag gta
//
LOCUS       DATIQC010000526         2178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_68752, whole genome shotgun sequence.
ACCESSION   DATIQC010000526 DATIQC010000000
VERSION     DATIQC010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68752"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..961)
                     /locus_tag="VLM17_11340"
     CDS             complement(<1..961)
                     /locus_tag="VLM17_11340"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HSR66180.1"
                     /translation="MKHRIAVLAAGLSLAFAGAAQTPAPTTTATAATPMAVRPIVLKA
                     AHLFDGRTGRMSEPGLVVVQGQKIIGVGADATYPNGARVIDLGDATLLPGFIDAHVHI
                     ADDHDDDWAAGIYNTMLRFPAEQAFHAAHNAKVTLEAGFTTVRVVGAPDFVDVSLRNA
                     INDGLAEGPRMLVAGHAIGSTGGHCDSAPYPTDRVVPATPMEGVCNGPEECRLATRQQ
                     MKFGADVIKICASGGVLSESDPVDVPQLTPDELRAIMSEAHSWGRKVAAHAHGDKAAR
                     LAVEAGVDSIEHGSFLTDATLKLMKARGVYLVPTRTTVVFIEDK"
     gene            1181..1474
                     /locus_tag="VLM17_11345"
     CDS             1181..1474
                     /locus_tag="VLM17_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020830892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GYD domain-containing protein"
                     /protein_id="HSR66181.1"
                     /translation="MATYIALCHFTDQGIRSVKDTTRRAAAVQEAAAKSGTNMTQIYW
                     TLGHYDLVTIIEAADEQAATAFALSIASAGNIRMETLRAFNREEMQGILGRMA"
     gene            1704..>2178
                     /locus_tag="VLM17_11350"
     CDS             1704..>2178
                     /locus_tag="VLM17_11350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66182.1"
                     /translation="MSHDYDPDDNFGQAFGADADIDEEAAIEALVWQLLLLVNPGDED
                     AALQQFAAYQEGMQHDAEAPPLDLLRDAIDWKAGFFVADDDPRALVESLDELAARYGL
                     RIDWDLDPDDDAALDDAEVTALLATAYDRLREHHYTLWTVETGSAHHAGWMTRQRD"
BASE COUNT          311 a          780 c          783 g          304 t
ORIGIN      
        1 ccttgtcctc gatgaacacc accgtggtgc gcgtcggcac caggtacacg ccgcgcgcct
       61 tcatcagctt gagcgtggcg tcggtgagga agctgccgtg ctcgatcgag tccacgcccg
      121 cctccaccgc cagccgcgcg gccttgtcgc cgtgcgcgtg cgcggccacc ttgcggcccc
      181 agctgtgcgc ctcgctcatg atcgcgcgca gttcgtcggg cgtgagctgc ggcacgtcga
      241 ccggatcgga ttcggacagc acgccgccgg acgcgcagat cttgatcacg tcggcgccga
      301 acttcatctg ctggcgggtg gcgaggcggc attcctccgg gccgttgcac acgccttcca
      361 tcggcgtcgc gggcaccacc cggtcggtcg gatacggcgc gctgtcgcaa tggccgccgg
      421 tcgagccgat cgcgtggccg gcgaccagca tgcgcgggcc ttcggccagg ccgtcgttga
      481 tcgcattgcg cagggacacg tcgacgaagt cgggcgcgcc gaccacgcgc accgtggtga
      541 agcccgcctc gagcgtgacc ttggcgttgt gcgcggcgtg gaacgcctgc tcggcgggga
      601 agcgcagcat cgtgttgtag atgccggcgg cccagtcgtc gtcgtggtcg tcggcgatgt
      661 gcacgtgcgc gtcgatgaag cccggcagca gcgtcgcgtc gccgaggtcg atcacccgcg
      721 ccccgttcgg ataggtcgcg tccgcgccga cgccgatgat cttctgcccc tgcacgacga
      781 cgaggcccgg ctcgctcatg cgcccggtgc ggccgtcgaa caggtgcgcg gccttgagca
      841 cgatcggccg cacggccatg ggcgtggcgg cagtcgcggt ggtggtgggc gcgggcgtct
      901 gcgcggcgcc ggcgaaggcg agcgacaggc cggcggccag gacggcgatg cggtgcttca
      961 agcgactctc cccagtcgat gtggacgccc gagtgtacgg ggtcgtgcac gggctgcact
     1021 gtgccggagc gcacgcgcgc gacgcggcgg atgcccgact cccggcacgg cagcgagggc
     1081 cggcatgcgc cggtcccggc gttcgaagga acgccctcgt ccccttcgca ggcggatcgg
     1141 cgcgaagcgc gacgaggccg tcccccaccg gagttccccc atggcgacct acatcgcgct
     1201 ctgccacttc accgaccagg gcattcgcag cgtcaaggac acgaccaggc gcgctgccgc
     1261 cgtccaggag gcggccgcga agtcgggcac gaacatgacg cagatctact ggacgctggg
     1321 ccactacgac ctggtcacga tcatcgaggc ggcggatgaa caggcggcga ccgcgttcgc
     1381 cctctcgatc gcctccgcgg gcaacatccg catggaaacg ttgcgcgcgt tcaaccgcga
     1441 ggagatgcag ggcatcctgg gcaggatggc ctagccgggc actcgcgggc ggtccgcgcc
     1501 acgggtcgcg ccgcggcggc ggccggctgc ggcgcggccg acgacagcgt gcggtgcgag
     1561 ggaatccgtc gccaggattt tcgcggcgtt atgctggtgc gcctgcgagc gcgcagcgat
     1621 ccgttggcga tcgaggcggg ccgcccaccc tgccgtcgcg ccatcgaggc gcgcgccgcc
     1681 aggtccgcgc cggagcatcc gccatgtccc acgactacga ccccgacgac aacttcggcc
     1741 aggcgttcgg ggccgatgcc gacatcgacg aggaggccgc catcgaggcg ctggtctggc
     1801 agttgctgct gctggtcaat cccggcgacg aggacgcggc gctgcagcag ttcgcggcct
     1861 accaggaggg catgcagcac gacgccgagg ctccgcccct cgacctgctg cgcgacgcga
     1921 tcgactggaa ggccggtttc ttcgtcgccg acgacgaccc gcgcgcgctg gtcgagagcc
     1981 tcgacgagct cgccgcgcgc tacggcctgc gcatcgactg ggacctcgat cccgacgatg
     2041 acgcggccct cgacgacgcc gaagtgacgg cgctgctcgc caccgcctac gaccgcctgc
     2101 gcgagcacca ctacacgctg tggacggtcg aaaccggcag cgcgcaccac gcaggctgga
     2161 tgacccggca gcgcgacg
//
LOCUS       DATIQC010000527         3360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_245606, whole genome shotgun sequence.
ACCESSION   DATIQC010000527 DATIQC010000000
VERSION     DATIQC010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245606"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1160
                     /locus_tag="VLM17_11355"
     CDS             <1..1160
                     /locus_tag="VLM17_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HSR66183.1"
                     /translation="VEALRRGRDGNREVDGEELASAACLRLSADAADLRDRDVYVVTV
                     PTPINEHKQPDFGPLVRASQGIGAALKRGDIVVYESTVYPGATEEICVPELERASGLR
                     CNVDFTVGYSPERINPGDRERRLVDIPKVTSGSTPETADFVDALYRSIIRAGTHKASS
                     IKVAEAAKVVENTQRDANIALINEFALIFHRLGIDTTEVLEAAGTKWNFLKFRPGLVG
                     GHCIGVDPYYLIQKAQSTGYYPDILLACRRINDAMGQHVAAEVIRLMIQRGIAVAGAR
                     ILLLGLTFKENCPDLRNTRVVDLAREFRDYGASVDIHDPWAEPAQALHEYGVSLLPEP
                     QPGAYDAIVVAVAHDQFRALGVDGLRRLANGRAVIYDIKGVFPKDAVDARL"
     gene            1197..2819
                     /locus_tag="VLM17_11360"
     CDS             1197..2819
                     /locus_tag="VLM17_11360"
                     /EC_number="1.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HSR66184.1"
                     /translation="MLRYLAYALSLLLALACAAFAWVDPAWGWAAAAFGALALLGTWD
                     LLQTRSTLRRNYPLLAHFRYGLESIGPEIRQYFIERDTEEAPFSRQQRALVYQRAKQV
                     MDVVPFGTEHDVYRGDYEWINHSLLPSDIASHDFRVRVGTLAPQPYDASVFNISAMSF
                     GALSAAAIRALNAGARLGGFYHDTGEGSISPYHREHGGDLVWEIGSGYFGCRDDDGRF
                     SEERFVGNARSPQVKMVEVKLSQGAKPGHGGVLPAAKVSAEIAATRGVLQGRDCVSPA
                     RHSAFSTPVGLLEFVAKLRALSGGKPAGFKLAIGHPWEWFAIAKAMQETGLLPDFIVV
                     DGAEGGTGAAPAEFVDHVGVPMHEGLMLVHNTLVGLGLRDRVRIGAAGKITSAFDIAR
                     TLAIGADWCNAARGFMFALGCIQSQSCHTDRCPTGVATQDPRRWRGLDVADKATRVFR
                     FQQNTLHALRDLLCAAGLDGPEQLGPEHILRRVSPTEVKSLAALYRFLRPGELLGSVP
                     EHAVFRAFWAEARSDSFAPPERLRSARGSKSV"
     gene            complement(2883..3239)
                     /gene="arsC"
                     /locus_tag="VLM17_11365"
     CDS             complement(2883..3239)
                     /gene="arsC"
                     /locus_tag="VLM17_11365"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464934.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0008794 - arsenate reductase
                     (glutaredoxin) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HSR66185.1"
                     /translation="MPSTPSRLYHAPRCSKSRGALELLRERGIEPEIVPYLEQPPSVE
                     ELRALLRLLGLRPRELLRTGEEDYAALGLADPALDDDALLAAMHAHPRLIERPIFVHG
                     GRAVVGRPPERVLELL"
BASE COUNT          493 a         1203 c         1194 g          470 t
ORIGIN      
        1 gcgtcgaggc gctgcggcgc ggccgcgacg gcaaccgcga ggtcgacggc gaggagctgg
       61 ccagcgccgc atgcctgcgg ctgagcgccg atgccgccga cctgcgcgac cgcgacgtct
      121 acgtcgtcac cgtgcccacg cccatcaacg agcacaagca gccggacttc ggccccctgg
      181 tgcgcgccag ccagggaatc ggcgcggcgc tcaagcgcgg cgacatcgtg gtctacgaat
      241 ccaccgtcta ccccggcgca accgaggaga tctgcgtgcc ggaactcgag cgcgcctcgg
      301 gcctgcgctg caacgtcgac ttcaccgtcg gctacagtcc cgagcgcatc aaccccggcg
      361 accgcgagcg ccgcctggtc gacatcccga aggtgacctc gggctcgacg cccgagacgg
      421 cggacttcgt cgacgcgctc taccgcagca tcatccgcgc cggcacccac aaggcctcga
      481 gcatcaaggt cgccgaggcg gcgaaggtgg tcgagaacac ccagcgcgac gccaacatcg
      541 cgctgatcaa cgagttcgcg ctgatcttcc accggctcgg catcgacacc acggaagtgc
      601 tcgaggcggc cggcaccaag tggaacttcc tgaaattccg ccccggcctg gtcggcggcc
      661 actgcatcgg cgtcgatccc tactacctga tccagaaggc gcaatcgacc ggctactacc
      721 cggacatcct gctcgcctgc cggcgcatca acgacgcgat gggccagcac gtcgccgccg
      781 aggtcatcag gctgatgatc cagcgcggca tcgcggtggc cggcgcgcgc atcctgctgc
      841 tcgggctgac cttcaaggag aactgcccgg acctgcgcaa cacgcgcgtg gtcgacctcg
      901 cgcgcgagtt ccgcgactac ggcgccagcg tcgacatcca cgatccctgg gccgaaccgg
      961 cgcaggcgct gcacgaatac ggggtctcgc tgctgccaga accgcagccg ggcgcctacg
     1021 acgcgatcgt ggtggcggtg gcgcacgacc agttccgcgc gctcggcgtc gacgggctgc
     1081 gccggctcgc gaacggccgc gcggtgatct acgacatcaa gggcgtgttc ccgaaggacg
     1141 cggtcgacgc ccggctgtag cgcgctatcc tcggaggaga ccgcggaggg ccttcgatgc
     1201 tgcgctacct cgcctatgcc ctgagcctgc tgctggcgct ggcctgcgcc gcgttcgcgt
     1261 gggtcgatcc ggcctggggc tgggcggccg ccgcgttcgg tgcgctcgcg ctgctcggca
     1321 cgtgggacct gctgcagacg cgcagcacgc tgcgccgcaa ctacccgttg ctggcgcact
     1381 tccgctacgg gctggagtcg atcggcccgg agatccgcca gtacttcatc gagcgcgaca
     1441 ccgaggaggc gccgttctcg cgccagcagc gcgccctggt ctaccagcgc gccaagcagg
     1501 tgatggacgt ggtgccgttc ggcaccgagc acgacgtcta ccgtggcgac tacgagtgga
     1561 tcaaccactc gctgctgccg agcgacatcg cctcgcacga cttccgggtg cgcgtcggca
     1621 cgctggcgcc ccagccctac gacgccagcg tgttcaacat ctcggcgatg agtttcggcg
     1681 cgctgtcggc ggccgcgatc cgtgcgctca acgccggcgc gcgcctgggc ggcttctacc
     1741 acgacaccgg cgagggctcg atctcgccct accaccgcga acacggcggc gacctggtgt
     1801 gggagatcgg ctcgggctac ttcggttgcc gcgacgacga cggacggttc agcgaggagc
     1861 gcttcgtcgg gaacgcgcgc tcgccgcagg tgaagatggt cgaggtgaag ctgtcgcagg
     1921 gcgccaagcc cgggcacggc ggagtgcttc ccgcggcgaa ggtgagcgcc gaaatcgccg
     1981 ccacgcgcgg cgtgctgcag gggcgcgact gcgtctcgcc ggcgcggcac tccgccttct
     2041 ccacgcccgt cggcctgctc gagttcgtgg cgaagctgcg cgcgctgtcg ggcggcaagc
     2101 cggccgggtt caagctggcg atcggccatc cctgggagtg gttcgcgatc gcgaaggcca
     2161 tgcaggaaac cggcctgctg ccggacttca tcgtcgtcga cggcgcggaa ggcggcaccg
     2221 gcgccgcgcc ggccgagttc gtcgaccacg tcggcgtgcc catgcacgag ggcctgatgc
     2281 tggtgcacaa caccctggtc gggctcgggc tgcgcgacag ggtgcggatc ggcgcggcgg
     2341 gcaagatcac cagcgcgttc gacatcgcgc gcacgctggc gatcggcgcg gactggtgca
     2401 atgccgcgcg cggtttcatg ttcgcgctcg gctgcatcca gtcgcagagc tgccataccg
     2461 accgctgccc gaccggcgtc gcgacgcagg acccgcgacg ctggcgcggc ctcgacgtgg
     2521 ccgacaaggc gacccgcgtg ttccgcttcc agcagaacac cctgcatgcg ctgcgcgacc
     2581 tgctgtgcgc cgcgggcctg gatggcccgg agcagctcgg ccccgaacac atcctgcggc
     2641 gcgtctcgcc gaccgaagtg aagtcgctcg cggcgctgta ccgcttcctg cgcccgggcg
     2701 aactgctcgg gagcgtgccg gagcatgcgg tgttccgcgc attctgggcg gaggcgcgca
     2761 gcgacagctt cgcgccgccg gagcggctgc gctcggcaag gggcagcaag tcggtgtagg
     2821 cgggcctgcg ccgtctggcc atcggcctcg atgcgccggc gacggtccgt gcgcggacgt
     2881 cgttacagca gttcgagcac ccgttccggc ggccgtccga ccaccgcgcg cccgccgtgc
     2941 acgaagatcg gccgctcgat caggcgcggg tgcgcgtgca tggcggcgag cagggcatcg
     3001 tcgtcgagcg ccgggtccgc cagcccgagc gccgcgtagt cctcctcgcc ggtgcgcagc
     3061 agctcgcgcg gtcgcagccc gagcaggcgc agcaacgcgc gcaattcctc caccgacggc
     3121 ggctgctcga ggtagggcac gatctccggc tcgatgccgc gctcgcgcag cagttccagc
     3181 gcgccgcgcg acttggagca gcgaggggcg tggtagaggc gggaaggcgt gctgggcatg
     3241 actgctgtcc ggggcgggcc ggggggcgtg tcgccacgcg acggccggaa atgaaaaagc
     3301 ccctgccgga acaggggctt cgcgatctgg tgggcggtgc agggttcgaa cctgcgaccc
//
LOCUS       DATIQC010000528         3837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_422791, whole genome shotgun sequence.
ACCESSION   DATIQC010000528 DATIQC010000000
VERSION     DATIQC010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3837
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422791"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VLM17_11370"
     CDS             <1..588
                     /locus_tag="VLM17_11370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003478832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008241 - peptidyl-dipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M2 family metallopeptidase"
                     /protein_id="HSR66186.1"
                     /translation="QQQSNEALINAQMRMALAKVSFLPFGLMIDRWRWGVFDGSITPE
                     HYNQAWWDLKAKYQGVAPVSPRGEDFFDPGAKYHVAANTPYTRYFLDYVLQFQFYKAL
                     CDASGYKGPLHSCSFYGSRAAGAKYEAMLAKGASQPWQQTLKDFTGSGRMDASALLEY
                     FAPLQEWLQQQNEGQTCGWTPGPPPAAGTASPKAG"
     gene            641..2329
                     /locus_tag="VLM17_11375"
     CDS             641..2329
                     /locus_tag="VLM17_11375"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HSR66187.1"
                     /translation="MFRTLTPALACTLLAACASAPVATSKGDPVVDVPAIHRPDGESA
                     AWWFRDGAAQAAARGAMRGHARNVILFVGDGMSLATVAAARIYEGQRHGQPGEENRLA
                     WEGWPATALSKTYDTDAQTPDSAGTMSAMATGAKTRAGVLSVGQQAARGDCAGGRAAP
                     LLTLWELAASSGMATGVVTTTRVTHATPAATFSHVADRNWESDADLSSQARAQGCIDI
                     ARQEIESPFGHGPDVLLGGGRMEFLPKEQADPEYPDQHGARSDGRDLVAAWRQRHPGG
                     AYAWNAAQLAAAPTDGPLLGLFEPGHMHYEHERPRDRAGEPSLAEMTRAAIARLSRRR
                     DGYVLLVEGGRIDHAHHAGNAFRALDETVALSDAVRVADTMTSAEDTLILVTADHSHT
                     LAFVGYGERGNPILGKVRGTSGEEGAPGQLAHDALGLPYTTLSYANGPGYTGASSDQA
                     QGPKHYPHAGKGYRPSGGRPDLTAVDTADPDYLQESTVPFSGESHGGDDVGIWARGPG
                     SDAVRGSVEQNAIFHVLLQATPRLRAALCAKGGCNHDGVPVTLPDPSAFATPAR"
     gene            complement(2370..2792)
                     /locus_tag="VLM17_11380"
     CDS             complement(2370..2792)
                     /locus_tag="VLM17_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HSR66188.1"
                     /translation="MQAYLWTKTAHLVFVMAWMASVFYLPRILVNLAEAGDAGEVRAR
                     LLLMGRRLYRFGHVMFGFAVLLGLALWLHFGIAGGWLHAKLALVALLLAYYILAGRWL
                     KGADAGRALPSARALRWFNELPLVLLVAIVYLVLAKPF"
     gene            2946..3551
                     /locus_tag="VLM17_11385"
     CDS             2946..3551
                     /locus_tag="VLM17_11385"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011258678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HSR66189.1"
                     /translation="MAAPSSKPYDRAYFDRWYRQRGIGDARRLARKVALAVAVAEHQL
                     ERPIRNVVDIGCGEGVWRAPLLKLRPGLRYLGFDASEYAVARYGARRNLHLARFGEFA
                     TLRPCAPVDLLVCSDVLHYLSTRELDRGLPGLAALCGGIAFIETFTREDDVEGDHHGF
                     QRRTARFYRDRLQAAGFTALGSHCWLSPLRAGSTTALETCA"
     gene            3642..>3837
                     /locus_tag="VLM17_11390"
     CDS             3642..>3837
                     /locus_tag="VLM17_11390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HSR66190.1"
                     /translation="MLYQWHELWRAGMAPFASWAEAGARAFAAPGTWLASWPEAPRIA
                     AGYELLHRLGKDYEKPAFGID"
BASE COUNT          592 a         1457 c         1314 g          474 t
ORIGIN      
        1 cagcagcaga gcaacgaagc cctgatcaac gcgcagatgc ggatggcgct ggccaaggtc
       61 tcgttcctgc cgttcggcct gatgatcgac cgctggcgct ggggcgtgtt cgacggctcg
      121 atcacgccgg agcactacaa ccaggcgtgg tgggacctga aggcgaagta ccagggcgtc
      181 gccccggtgt cgccgcgcgg cgaggacttc ttcgatcccg gcgcgaaata ccacgtcgcc
      241 gccaacacgc cgtacacgcg ctatttcctc gattacgtcc tgcagttcca gttctacaag
      301 gcgttgtgcg acgcgtcggg ctacaagggg ccgctgcact cgtgcagctt ctacggcagc
      361 agggcggcgg gcgcgaagta cgaagcgatg ctcgccaagg gcgccagcca gccatggcag
      421 cagacgctca aggacttcac cggcagcggg cgcatggacg cctcggcgct gctcgaatac
      481 ttcgcgccgc tgcaggagtg gctgcagcag cagaacgaag gccagacctg cggctggacg
      541 cccggtcccc cgcccgcggc gggcaccgcg tcgcccaagg ccggctgacg ccgcaggcgg
      601 cgcggcataa tcggcgcccg ctccgccgcc ggtgccgccg atgttccgca cgctcacgcc
      661 cgccctcgcc tgcaccctgc tcgccgcctg cgcgtcggcg ccggtggcga catcgaaggg
      721 cgatcccgtc gtcgacgtgc cggcgatcca tcgtcccgac ggcgagagcg cggcgtggtg
      781 gttccgcgac ggcgccgcgc aggcggccgc gcgcggcgcg atgcgcgggc atgcgcgcaa
      841 cgtgatcctg ttcgtcggcg acggcatgag cctggccacc gtcgccgcgg cgcgcatcta
      901 cgaaggccag cgccatggcc agcccggcga ggagaaccgc ctcgcctggg aaggctggcc
      961 ggccaccgcg ctcagcaaga cctacgacac cgacgcgcag acgccggatt cggccggaac
     1021 gatgagcgcg atggcgaccg gcgcgaagac ccgggccggc gtgctgtcgg tcggccagca
     1081 ggcggcccgc ggcgattgcg ccggcgggcg cgcggcgccg ctgctgacgt tgtgggaact
     1141 cgccgcctcc agcggcatgg cgaccggcgt cgtcaccacc acgcgggtca cccacgcgac
     1201 gcccgcggcg accttcagcc acgtcgccga ccgcaactgg gagagcgacg cggatctgtc
     1261 gtcgcaggcg cgcgcgcagg gctgcatcga catcgcacgg caggaaatcg agtcgccgtt
     1321 cggccacggg cccgacgtgc tgctgggcgg cggccgcatg gagttcctgc cgaaggaaca
     1381 ggccgatccc gaatatcccg accagcatgg cgcgcgctcc gacgggcgcg acctcgtcgc
     1441 cgcatggcga caacgccatc ctggcggcgc gtatgcctgg aacgccgcgc agctcgccgc
     1501 cgcgccgacg gacgggccct tgctcggcct gttcgagccg ggccacatgc actacgagca
     1561 cgagcgaccg cgcgatcgcg ccggcgagcc ctcgctggcc gaaatgaccc gcgccgcgat
     1621 cgcgcggctg tcgcgccgcc gcgacggcta cgtgctgctg gtcgaaggcg gccgcatcga
     1681 ccacgcccac cacgccggca atgccttccg cgcgctcgac gaaaccgtcg cgctgagcga
     1741 cgcggtgcgc gtcgccgaca cgatgacctc cgccgaggac acgctgatcc tggtcaccgc
     1801 cgaccactcg cacacgctgg ccttcgtcgg ctacggcgag cgcggcaatc cgatcctcgg
     1861 caaggtgcgc ggcaccagcg gcgaggaagg cgcgccgggc cagctcgcgc acgacgcgct
     1921 cggcctgccc tacaccacgc tgtcctatgc caacggcccc ggctacaccg gcgccagcag
     1981 cgaccaggcg cagggaccca agcattaccc gcatgcgggc aagggctaca ggccgtccgg
     2041 cggacgcccc gacctcaccg ctgtggatac cgcggatccg gactacctgc aggaaagcac
     2101 ggtgccgttc tccggcgaat cccacggcgg cgacgacgtc ggcatctggg cgcggggccc
     2161 gggcagcgac gcggtgcgcg gcagcgtcga gcagaacgcg atcttccacg tcctgctgca
     2221 ggccacgccg cgcctgcgcg cggcgctgtg cgcgaagggc ggctgcaacc acgacggcgt
     2281 gccggtgacg ctgcccgatc cgtccgcgtt cgcgacgccg gcccgctgat gcggagggaa
     2341 ctgttgtccg tccgcgcccg catgcgccct cagaacggct tggccagcac caggtagacg
     2401 atcgccacca gcagcaccag cggcaactcg ttgaaccagc gcagcgcgcg cgccgacggc
     2461 aacgcccggc cggcgtcggc ccccttcagc cagcgaccgg cgaggatgta gtacgccagc
     2521 agcagcgcca ccagcgccag cttggcgtgc agccacccgc cggcgatgcc gaagtgcaac
     2581 cacagcgcga gcccgagcag caccgcgaaa ccgaacatga cgtggccgaa gcggtacagc
     2641 cgcctgccca tcagcagcag ccgcgcgcgc acctcgcccg cgtcgcccgc ttccgccagg
     2701 ttgaccagga tgcgcggcag gtagaacacg ctggccatcc aggccatcac gaagacgagg
     2761 tgcgcggtct tggtccagag gtaggcctgc atggaagctt cgaagtcggc aaggaaggga
     2821 cggatcatcg ggcatcgcgc cagcgccgtc agccccgacg tcctgtcccg ggaaccgccc
     2881 agccggcgcg tgctgcccgg agcgcaccgc tgctacgctg cgccctcgcc gaacagcccg
     2941 cccagatggc cgccccttcc tccaagccct acgaccgcgc ctacttcgac cgctggtacc
     3001 gacagcgcgg catcggcgat gcgcgccggc tcgcgcgcaa ggtggcgctc gcggtggccg
     3061 tcgccgagca ccagctcgaa cgcccgatcc ggaacgtggt cgacatcggc tgcggcgaag
     3121 gcgtgtggcg cgcgccgctc ctgaagctcc gccccgggct gcggtacctc ggattcgacg
     3181 ccagcgaata cgcggtcgcg cgctacggcg cgcggcgcaa cctccatctt gcgcgattcg
     3241 gcgagttcgc caccttgcgt ccgtgcgccc cggtcgacct gctggtgtgc agcgacgtgt
     3301 tgcattacct gtccacgcgc gagctcgacc gcggcctgcc cggcctcgcc gcgctgtgcg
     3361 gcgggatcgc cttcatcgaa accttcaccc gcgaggacga cgtcgaaggc gaccaccacg
     3421 gtttccagcg gcgcaccgcc cgcttctacc gcgaccgcct gcaggcagcc ggcttcaccg
     3481 cgctcggctc gcactgctgg ctgtcgccgc tgcgcgcggg cagcaccacg gcgctggaaa
     3541 cctgcgcctg aaactgcgcc acgggtcacg atcgacgccc ccgtcccgtc gggcggacca
     3601 cgctatgctg cgacgcagca cccaccggcc cggggaagtc gatgctgtac cagtggcatg
     3661 aactctggcg cgccggcatg gcgcccttcg ccagctgggc cgaggctggc gcgcgcgcgt
     3721 tcgcggcgcc cggcacctgg ctcgcgagct ggcccgaggc gccgcgcatc gccgccggct
     3781 acgagctgct gcaccggctc ggcaaggact acgagaagcc cgcgttcggc atcgacc
//
LOCUS       DATIQC010000529         2111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_386954, whole genome shotgun sequence.
ACCESSION   DATIQC010000529 DATIQC010000000
VERSION     DATIQC010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386954"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..811
                     /locus_tag="VLM17_11395"
     CDS             <1..811
                     /locus_tag="VLM17_11395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015448596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HSR66191.1"
                     /translation="YLVSLDRVDEARAVMAEMDQTLDDEQLRTMREQMAGEAQQSVRD
                     LRGPRFGLMPVVWVGITLSALQQLVGINVIFYYSSVLWQAVGFDEGDSLKISVISGAI
                     NIGATIVAIACIDRFGRRPLLLVGSAGMSVSLVVLAYLFGTAPLVEVAATSTCAAPCL
                     QPTLAGGSATLALVAANLFVIFFGFSWGPVVWVLLGEMFPNRIRALGLAVAASAQWLA
                     NFAITATFPALAELGLAFAYGLYAAFAALSLWFVLAAVRETRGIELEDMRE"
     gene            889..1917
                     /locus_tag="VLM17_11400"
     CDS             889..1917
                     /locus_tag="VLM17_11400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HSR66192.1"
                     /translation="MRKKTKATSFDIAHLAGVSQATVSRVLRGSPLVNVETRKRVEAL
                     ARQLNYKVDRHASSLRTQRSGTLALLLFEDPTPDESHINPFFLSMLGSITRACARHGQ
                     DLLVSFQQLSNDWHADYENSMKADGLILLGYGDYLAYRSKLDEMVEQGTHFVRWGAVM
                     PGQPGVSIGCDNFHGGQLVGRHLHGVGRRKVAFLGHASSHYPEFEERWRGCAEAMAEL
                     GAPMDAALQVDAETSEEAGHAAAQELLRRGVPFDAVFAASDLIAIGAMRALAGAGRRI
                     PEDVAVVGFDDIPMARFSNPPLTTVVQDTARAGGLLVETLLRQVREEPVDSTMLPASL
                     VVRRSSGA"
BASE COUNT          272 a          771 c          749 g          319 t
ORIGIN      
        1 ctacctggtc tcgctcgacc gcgtcgacga ggcgcgcgcc gtcatggccg agatggacca
       61 gacgctcgac gacgagcagc tgcgcacgat gcgcgagcag atggcgggcg aggcgcagca
      121 gtcggtgcgc gacctgcgcg ggccccggtt cggcctcatg cccgtggtgt gggtgggcat
      181 cacgctgtcc gcgctgcagc agctggtcgg gatcaacgtg atcttctact acagcagcgt
      241 gctgtggcag gccgtcggct tcgacgaggg cgactcgctc aagatctccg tgatctcggg
      301 cgccatcaac atcggcgcca cgatcgtcgc gatcgcctgc atcgaccggt tcgggcgccg
      361 gcccctgctg ctggtcggct cggccggcat gtcggtgtcg ctggtggtgc tggcctacct
      421 gttcggcacc gcgccgctgg tcgaggtggc ggcgacgtcg acctgcgcgg ccccgtgcct
      481 gcagccgacg ctcgccggcg gatcggcgac cctcgcgctg gtggccgcga acctgttcgt
      541 catcttcttc ggcttctcgt ggggccccgt cgtgtgggtg ctgctgggcg agatgttccc
      601 caaccgcatc cgcgcgctcg gcctcgcggt ggcggcatcg gcgcagtggc tggccaactt
      661 cgcgatcacc gcgaccttcc ccgcgctcgc cgagctcggc ctcgccttcg cctacggcct
      721 gtacgccgcc ttcgccgcgc tgtcgctgtg gttcgtgctg gcggcggtgc gcgagacccg
      781 cggcatcgag ctggaggaca tgcgcgaatg aacgcccgcc cgctgggcgg gtgcggcccc
      841 ggagacgagg ggctagactc gggcgccggc cctcgtgcgg gcgcacgcat gcgcaagaag
      901 accaaggcga cctcgttcga catcgcgcac ctcgccggcg tttcgcaggc gaccgtgtcg
      961 cgcgtgctgc gcggcagccc gctggtcaac gtggaaacgc gcaagcgcgt cgaggcgctc
     1021 gcgcgccagc tcaactacaa ggtcgaccgc cacgcgtcga gcctgcgtac gcagcgttcc
     1081 ggcacgctgg cgctgctgct gttcgaggat ccgaccccgg acgagtcgca catcaatccg
     1141 ttcttcctgt cgatgctggg ctcgatcacc cgcgcctgcg cgcgccacgg ccaggacctg
     1201 ctggtgtcgt tccagcagct gtccaacgac tggcatgccg actacgagaa cagcatgaag
     1261 gccgacggcc tgatcctgct cgggtacggc gactacctcg cctaccgcag caagctggac
     1321 gagatggtcg agcagggcac ccacttcgtg cgctggggcg cggtgatgcc cgggcagccg
     1381 ggcgtgtcga tcggctgcga caacttccac ggcggccagc tggtcggccg ccacctgcac
     1441 ggcgtcggcc gccgcaaggt cgccttcctc ggccacgcct ccagccacta cccggaattc
     1501 gaggagcgct ggcgcggctg cgccgaggcg atggccgaac tcggcgcgcc gatggacgcc
     1561 gcgctgcagg tcgacgccga aacctcggag gaggcaggcc acgccgccgc gcaggaactg
     1621 ctgcggcgcg gcgttccctt cgacgccgtg ttcgccgcca gcgacctgat cgcgatcggc
     1681 gcgatgcgcg cgctggccgg agccgggcgc cggattcccg aagacgtcgc cgtggtcggc
     1741 ttcgacgaca tcccgatggc ccgcttcagc aacccgccgc tgaccaccgt ggtgcaggac
     1801 accgcgcgcg cgggcgggtt gctggtggaa acgctgctgc ggcaggtgcg cgaggaaccg
     1861 gtcgacagca ccatgctgcc ggcctcgctg gtggtgcgcc gctcgagcgg cgcctgagcc
     1921 cccttcccgg cgccccgcct cagcggcgcg cgcctgccgt cgcgggctcc agcgcggcgc
     1981 gcagccgcgc gtcggtgacc ggcgcatcca gcaggtagac agcgacgtcg tgcgcgccga
     2041 ccgtggtcga cagcatgccg ttcggcccga cctcggcatc gtcgccgccg agcgccgcgc
     2101 gccagtgccc t
//
LOCUS       DATIQC010000530         2581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_316865, whole genome shotgun sequence.
ACCESSION   DATIQC010000530 DATIQC010000000
VERSION     DATIQC010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316865"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..875)
                     /gene="purD"
                     /locus_tag="VLM17_11405"
     CDS             complement(<1..875)
                     /gene="purD"
                     /locus_tag="VLM17_11405"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017155944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HSR66193.1"
                     /translation="MKILVIGSGGREHALAWKIAQSRRVSEVLVAPGNAGTAGESKCR
                     NVAVAAADIDALLALVQREGVTLTVVGPEGPLVAGVVDRFRAAGHRIFGPTAAAAQLE
                     GSKAFAKDFLARHGIPTAHYAVHTDVDAALAYLRDKGAPIVIKADGLAAGKGVIVAMT
                     LAEAEAAITDMLAGNAFGAAGARVVIEEFLDGEEASFISMVDGTHALPMATSQDHKRV
                     GDGDTGPNTGGMGAYSPAPVVTPEVHARVMREVVGPTVRGMAADGVPFTGFLYAGLMI
                     DASGAPKVIEFNCRFG"
     gene            complement(895..1653)
                     /locus_tag="VLM17_11410"
     CDS             complement(895..1653)
                     /locus_tag="VLM17_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018971402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HSR66194.1"
                     /translation="MRQKIALITGGSRGLGRSTALALAQAGVDVVLTYHSRRAEADAV
                     VAAIEGLGRKAVALQLDVADTAAYPEFVQQLRDGLARTWSSERFDFLVNNAGIGLHAP
                     FMETTEAQFDQLVNVHLKATFFLSQALLPLLEDGGRIVNLSSGLARFSLPGYAAYAAM
                     KGGIEVLTRYMAKELGPRRIAVNVVAPGAIETDFGGGVVRDNPDLNRGIAEQTALGRV
                     GLPDDIGGAIASLLSDDNRWINGQRIEISGGIFL"
     gene            complement(1682..>2581)
                     /gene="purH"
                     /locus_tag="VLM17_11415"
     CDS             complement(1682..>2581)
                     /gene="purH"
                     /locus_tag="VLM17_11415"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019302295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HSR66195.1"
                     /translation="ENPHQHAAFYRDLHPVPGTLATFTQLQGKELSYNNLADADAAWE
                     CVRQFERPACVIVKHANPCGVAEAVDNGAAYELAYATDPTSAFGGIIAFNRALDGATA
                     KRILDRQFVEVLIAPDFDAEALACAKKKANVRVLRIPHGEGRNNFDVKRVGSGLLMQT
                     SDIREVTRDELKVVTRRAPTPEELDDLLFAWRVAKFVKSNAIVYAKDHRTVGVGAGQM
                     SRVYSARIAGIKAVDAGLVVPGSVMASDAFFPFRDGIDAAAEAGIRAVIQPGGSMRDA
                     EVIAAADEHGLAMVFTGVRHFRH"
BASE COUNT          376 a          885 c          910 g          410 t
ORIGIN      
        1 ccgaagcggc agttgaactc gatgactttc ggcgcgccgg atgcatcgat catcagcccg
       61 gcgtagagga agccggtgaa cggcacgccg tcggcggcca tgccgcgcac ggtcggtccg
      121 accacctcgc gcatcacccg cgcgtgcacc tcgggcgtca ccaccggcgc cggcgaatac
      181 gcgcccatgc cgccggtatt cggaccggtg tcgccgtcac cgacgcgctt gtggtcctgc
      241 gaggtggcca tcggcagcgc gtgcgtgccg tcgaccatcg agatgaagct cgcttcctct
      301 ccgtccagga attcctcgat caccacgcgc gcgccggccg cgccgaacgc gttgccggcg
      361 agcatgtcgg tgatcgccgc ttcggcctct gccagcgtca tcgcgacgat cacgcccttg
      421 ccggcggcga ggccgtcggc cttgatcacg atgggcgcac ccttgtcgcg caagtaggcg
      481 agcgccgcgt cgacgtcggt gtgtaccgcg tagtgcgcgg tgggaatgcc gtggcgggcg
      541 aggaaatcct tggcgaaggc cttgctgcct tcgagctgcg ccgcggccgc ggtcgggccg
      601 aagatccggt ggccggcggc gcggaagcgg tcgaccacgc cggccaccag cggcccctcg
      661 ggtccgacca cggtgagcgt cacgccctcg cgttgcacca gcgcgagcag ggcgtcgatg
      721 tcggcggcgg cgacggcgac gttacggcat ttgctctcgc cggccgtgcc tgcgttgccg
      781 ggtgcgacca gcacctcgct cacccggcgc gactgcgcga tcttccacgc gagcgcgtgc
      841 tcgcggccgc cggaaccgat gacgaggatt ttcatgccga ttgccagtgt tgcgtcagag
      901 gaagatgccg cctgatattt cgatgcgctg gccgttgatc cagcggttgt cgtccgaaag
      961 caacgacgcg atggcgccac cgatatcgtc cggcaggccg acgcggccga gcgcggtctg
     1021 ttcggcgatg ccccggttga ggtcggggtt gtcgcggacg acgccaccgc cgaagtcggt
     1081 ctcgatcgcg cccggcgcga cgacgttcac cgcgatgcga cgcggtccaa gttccttggc
     1141 catgtagcgc gtcaacactt cgatgccgcc tttcatcgcg gcgtaggcgg catagccggg
     1201 aagcgagaag cgcgccagcc ccgacgacag gttgacgatg cgcccgccat cctcgagcag
     1261 gggcagcagg gcctggctga ggaagaacgt cgccttcagg tgcacgttga ccagctggtc
     1321 gaactgcgcc tcggtagtct ccatgaaggg cgcatggagg ccgatgccgg cgttgttgac
     1381 caggaaatcg aagcgctcgc ttgaccacgt ccgcgcgagg ccgtcgcgca gctgctgcac
     1441 gaactccgga taagccgccg tgtcggcgac gtcgagctgc agcgcgaccg ccttgcgccc
     1501 gagcccctcg atcgcggcca ccaccgcgtc cgcttcggcg cggcgactgt ggtaggtcag
     1561 cacgacatcc acgccggcct gcgccagggc gagcgcggtg ctgcgcccca ggccgcggct
     1621 gccaccggtg atgagtgcga tcttctggcg catgggcgtg ccctcctgga agacggacag
     1681 cctagtggcg gaagtggcgg acgccggtga acaccatcgc caggccgtgt tcgtcggccg
     1741 cggcgatgac ttcggcatcg cgcatcgaac cgccgggctg gatcaccgcc cggatgccgg
     1801 cctcggcggc ggcgtcgatg ccgtcgcgga acgggaagaa cgcgtcgctc gccatcaccg
     1861 atcccggcac cacgaggccg gcatcgaccg ccttgatgcc ggcgatgcgc gcagaataca
     1921 cccggctcat ctggccggcg ccgacgccga cggtgcggtg gtccttcgcg tacacgatcg
     1981 cgttggactt gacgaacttg gccacgcgcc aggcgaacag caggtcgtcg agttcctccg
     2041 gcgtcggcgc gcgccgggtc accaccttca gctcgtcgcg ggtgacttcg cggatgtcgc
     2101 tggtctgcat cagcagcccc gaacccacgc gcttgacgtc gaagttgttg cggccctcgc
     2161 cgtgcgggat ccgcagtacc cgcacgttgg ccttcttctt cgcgcaggca agcgcctcgg
     2221 cgtcgaagtc cggggcgatc agcacctcga cgaactgacg gtcgaggatg cgcttcgcgg
     2281 tcgcgccgtc gagcgcgcgg ttgaaggcga tgatgccccc gaacgcggag gtcggatcgg
     2341 tggcgtaggc gagttcgtag gcggcgccgt tgtcgacggc ctcggcgacg ccgcacggat
     2401 tggcgtgctt gacgatcacg caggccgggc gctcgaactg gcgcacgcat tcccacgccg
     2461 cgtccgcgtc ggcgaggttg ttgtaggaca gctccttgcc ctgcagctgc gtgaaggtgg
     2521 cgagcgtgcc cggcaccgga tgcaggtcgc ggtagaacgc ggcgtgctgg tgcgggttct
     2581 c
//
LOCUS       DATIQC010000531         1664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_599542, whole genome shotgun sequence.
ACCESSION   DATIQC010000531 DATIQC010000000
VERSION     DATIQC010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_599542"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1664
                     /locus_tag="VLM17_11420"
     CDS             <1..>1664
                     /locus_tag="VLM17_11420"
                     /inference="COORDINATES: protein motif:HMM:NF024583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HSR66196.1"
                     /translation="GKLGGQAQVPGVAGTWKDLTDNVNSMASNLTTQVRNIAEVATAV
                     AKGDLSRKIAVDAKGEILELKNTLNVMVDQLNGFAAEVTRVAREVGTEGKLGGQAQVP
                     GVAGTWKDLTDNVNSMASNLTTQVRGIAKVVTAVATGDLHQKLTVEAKGEIAELADTI
                     NAMTGTLAIFADQVTTVAREVGVEGRLGGQAMVPGTAGIWEDLTANVNQLAANLTTQV
                     RALAEVATAVTQGDLTRSIQVDVRGELSDLKDNINAMIANLRATTESNREQDWLKTNL
                     AKFGGMMQGQRDLITLGHMLLSELAPLVSAQQGLMYMVESGHDGEPGLRQLAGYADSN
                     RSPAARTLRFGEGLVGQCAAQGQLILIHDVPAGTVQIESGLFSAVPRSVIVFPVVFEN
                     HVKAVIELASLTGFTATQRTFLEQLSESIGIVLNTIEATMRTEHLLAQSQQLAAELQS
                     QQKELQQTNEEIALKAALLAEQKAEVEHKNQQIEHARRALEDKAAELALTSRYKSEFL
                     ANMSHELRTPLNSILILGQQLADNPSENLSPRQVEFAKTIHAAGTDL"
BASE COUNT          311 a          597 c          553 g          203 t
ORIGIN      
        1 ggcaagctcg gcggccaggc gcaggtgccc ggcgtcgccg gcacctggaa ggacctcacc
       61 gacaacgtca actcgatggc gtccaacctc accacccagg tgcgcaacat cgcggaggtc
      121 gcgaccgcgg tcgccaaggg cgacctgtcg cgcaagatcg cggtggacgc caagggcgag
      181 atcctcgagc tgaagaacac cctcaacgtg atggtggacc agctcaacgg cttcgcggcg
      241 gaagtgacgc gcgtggcgcg cgaggtcggt accgaaggca agctcggcgg ccaggcgcag
      301 gtgcccggcg tcgccggcac ctggaaggac ctcaccgaca acgtcaactc gatggcgtcc
      361 aacctcacca cccaggtgcg cggcatcgcc aaggtggtga ccgcggtcgc gaccggcgac
      421 ctgcaccaga agctgacggt ggaggcgaag ggcgagatcg ccgagctcgc cgacaccatc
      481 aacgcgatga ccggcacgct cgcgatcttc gccgaccagg tgacgacggt ggcgcgcgaa
      541 gtcggcgtcg agggccgcct cggcggccag gcgatggtgc cgggcaccgc cggcatctgg
      601 gaggacctga ccgcgaacgt gaaccagctc gcggccaacc tgaccacgca ggtgcgcgcg
      661 ctcgccgaag tggcgaccgc ggtcacccag ggcgacctga cgcgctccat ccaggtcgac
      721 gtgcgcggcg agctgtccga cctcaaggac aacatcaacg cgatgatcgc caacctgcgc
      781 gcgaccaccg agtcgaaccg cgagcaggac tggctgaaga ccaacctcgc caagttcggc
      841 ggcatgatgc agggccagcg cgacctgatc acgctcggcc acatgctgct gtccgaactg
      901 gcgccgctgg tgagcgccca gcagggtttg atgtacatgg tcgagtccgg ccacgacggc
      961 gagccgggcc tgcgccagct cgccggctac gccgactcca accgctcgcc ggccgcgcgc
     1021 acgctgcgct tcggcgaggg cctggtcggc cagtgcgccg cgcagggcca gctgatcctg
     1081 atccacgacg tcccggccgg cacggtgcag atcgagtccg gcctgttcag cgccgtcccg
     1141 cgcagcgtga tcgtgttccc ggtggtgttc gagaaccacg tcaaggcggt gatcgaactc
     1201 gcctcgctca ccggcttcac cgcgacccag cgcaccttcc tcgagcagct ctccgagagc
     1261 atcggcatcg tgctgaacac gatcgaggcg accatgcgca ccgagcacct gctcgcgcag
     1321 tcgcagcagc tcgcggcgga gctgcagtcg cagcagaagg agctgcagca gaccaacgag
     1381 gagatcgcgc tcaaggcggc gctgctggcc gagcagaagg cggaggtcga gcacaagaac
     1441 cagcagatcg agcacgcccg ccgcgccctc gaggacaagg cggccgagct cgcgctgacc
     1501 tcgcgctaca agtccgagtt cctcgccaac atgtcgcacg agctgcgcac gccgctcaac
     1561 tcgatcctga tcctgggcca gcagctcgcc gacaacccca gcgagaacct gtcgccgcgc
     1621 caggtcgagt tcgccaagac catccacgcg gccggcaccg acct
//
LOCUS       DATIQC010000532         3683 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_69004, whole genome shotgun sequence.
ACCESSION   DATIQC010000532 DATIQC010000000
VERSION     DATIQC010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69004"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /gene="rpsB"
                     /locus_tag="VLM17_11425"
     CDS             complement(<1..584)
                     /gene="rpsB"
                     /locus_tag="VLM17_11425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011346896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HSR66197.1"
                     /translation="MPQITMRQMLEAGVHFGHQTRYWNPKMGPYIFGARGKIHIINLE
                     KTMPLFSDAMNFLSAIAQKRGMVLFVGTKRSAREAIKEEAERCGMPYMTQRWLGGTLT
                     NFRTVKQSVSRLKELEAGETDGTFQKLVKHEVLSLRRERDKLLASLGGIKEMNRLPDA
                     LFVIDIGHEDIAVQEAKKLGIPVIAVVDTNYDPAL"
     gene            878..1654
                     /gene="map"
                     /locus_tag="VLM17_11430"
     CDS             878..1654
                     /gene="map"
                     /locus_tag="VLM17_11430"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010486307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HSR66198.1"
                     /translation="MPIVPKTPEEIEKMRVAGRLAAEVLQVVAPHVKPGVTTEELDRI
                     CHDHIVNVQQAIPANVGYKGFPATVCASVNNVICHGIPSPAKVLRDGDIVNIDVTVIK
                     DGWHGDTSRMYYAGTPSVMARRLVETTREAMFRGIRAVRPGATLGDIGHAIQEYAEGQ
                     RFSVVREYCGHGIGRVYHEDPQVLHYGRPGEGTVLRPGMTFTIEPMINEGTRHTRLLP
                     DGWTVVTKDRKLSAQWEHTVVVTDTGVEILTRLPGDDNEL"
     gene            1651..>3683
                     /gene="glnD"
                     /locus_tag="VLM17_11435"
     CDS             1651..>3683
                     /gene="glnD"
                     /locus_tag="VLM17_11435"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003467166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HSR66199.1"
                     /translation="MSGHPAAADLPAATDAAWSADARARLAATDAALADRFDRDDDID
                     TLLHARAQAADALIREAWARCIPTGAPLALFAVGGYGRGELFPQSDLDLLVLADVAAQ
                     AAAADALARLFALLWDAGLPAGHAVRSAEECTQAAIADITVLTALQEARPLCADDAAV
                     AALQAAIAPARAWPPREYFVAKREEQRARHARFGDTADNLEPNLKEGPGGLRDVQTLR
                     WMALRVLGARDLQQLVALGQFGADEFATLDRERRALARLRFGLHLVARRREERLRFDH
                     QKALAARLGFADADGALAVEQMMQGFYRSAALVLRINERLLQRFEEELEGEVAPEAVD
                     DAHELRRGYLAARAPQWPDGDAGRVFALFAAWATHPRVRGLHSRTARALAEALPAIPP
                     YDAAPPALRAAFMALLRGPQPVETLARMARLGVLGRWIPAFARVSGRMQFDLFHVYTV
                     DQHTLAVLRNIATFSAGEPDPRFAIAHEVWPRLRKPELLLLAALFHDIAKGRGGDHSE
                     LGAVDARAFCSAHGLGEADTALVAWLVQKHLLMSVTAQKQDIGDPEVIHRFAREVADR
                     ERLDLLYLLTCADIAGTSPKLWNAWKDRLLADLHTATRLALRRGLEHPVAAGERVAET
                     RAAAEARLGGEGMDEAEIARLFAAMPEESFLRGRPDQVAWQAAAMRGLAPGATR"
BASE COUNT          520 a         1300 c         1347 g          516 t
ORIGIN      
        1 agggccgggt cgtagttggt gtcgacgacc gcgatgaccg ggatgccgag cttcttggct
       61 tcctgcaccg cgatgtcctc gtggccgatg tcgatcacga acagcgcgtc gggcaggcgg
      121 ttcatttcct tgatgccgcc cagcgaggcc agcagcttgt cgcgctcgcg gcgcagcgac
      181 aggacttcat gcttgaccag cttctggaag gtgccgtcgg tctcgccggc ctcgagttcc
      241 ttcaggcgcg acaccgactg cttgacggtg cggaagttgg tcagggtgcc gcccagccag
      301 cgctgggtca tgtacggcat gccgcagcgc tcggcttctt ccttgatcgc ctcgcgcgcg
      361 gagcgcttgg tgccgacgaa caggaccatg ccgcgcttct gcgcgatcgc cgagaggaag
      421 ttcatcgcgt cggagaagag cggcatcgtc ttctcgaggt tgatgatgtg gatcttgccg
      481 cgggcgccga agatgtacgg gcccatcttg gggttccagt agcgcgtctg gtggccgaag
      541 tggacgccgg cttccagcat ctggcgcatg gtgatctggg gcattgcggt atttcctcga
      601 aagggaaccg gccgacgaaa atgcggcttg tcacgcccga gggcgcgggt tccggggttg
      661 ggcctccctg tcgtcactgc caccgaaccc gcttgcgcgg gcaccccgga gcaggggttg
      721 ccgacaggtg tggattcgcc ggtgtcgccc ggcgtgggcg gccgggacgg gcgcagggcc
      781 ggtctcggag ccgcgggatt gtaccggccg gggcgggcag gggcaatcgc gtgcccggga
      841 aaagctgaac gggcggccga tgggcgataa tcgccggatg ccgatcgtcc ccaagacccc
      901 cgaggaaatc gagaagatgc gcgtcgccgg ccgcctggcc gccgaggtgc tgcaggtcgt
      961 cgcgccgcac gtgaagccgg gcgtgaccac cgaggaactc gaccgcatct gccacgacca
     1021 catcgtcaac gtccagcagg cgatccccgc caacgtcggc tacaagggtt tcccggcgac
     1081 ggtctgcgcg tcggtcaaca acgtcatctg ccacggcatc ccgagcccgg cgaaggtgct
     1141 gcgcgacggc gacatcgtca acatcgacgt caccgtgatc aaggacggct ggcacggcga
     1201 caccagccgc atgtactacg ccggcacgcc gtcggtgatg gccaggcggc tggtggaaac
     1261 cacccgcgag gcgatgttcc gcggcatccg cgcggtgcgc cccggcgcga ccctcggcga
     1321 catcggccac gcgatccagg aatacgccga gggccagcgc ttctcggtgg tgcgcgagta
     1381 ctgcgggcac ggcatcggcc gggtctacca cgaggacccg caggtgctgc attacggccg
     1441 cccgggcgaa ggcacggtgc tcaggcccgg catgaccttc accatcgagc cgatgatcaa
     1501 cgaaggcacc cgccacaccc gcctgctgcc cgacggctgg acggtggtga ccaaggaccg
     1561 caagctgtcc gcgcagtggg agcacaccgt ggtcgtgacc gacaccggcg tcgagatcct
     1621 cacccgcctt ccgggcgacg acaacgagct gtgagcggac accccgccgc ggccgacctg
     1681 ccggcggcga cggatgccgc ctggtccgcc gatgcccgcg cccggctggc ggccaccgat
     1741 gcggcgctgg cggaccgctt cgaccgcgac gatgacatcg acacgctgct gcatgcgcgc
     1801 gcgcaggccg ccgacgcgct gatccgcgag gcgtgggcgc gctgcatccc cacgggcgcg
     1861 ccgctggcgc tgttcgcggt cggtggctat ggccgcggcg agctgttccc gcaatcggac
     1921 ctcgacctgc tggtgctcgc cgacgtcgcc gcgcaggcgg cggccgccga cgccctggcg
     1981 cggctgttcg cgctgctgtg ggacgccggc cttccggccg gccacgcggt gcgctcggcg
     2041 gaggaatgca cgcaggcggc gatcgccgac atcaccgtgc tcaccgcgct gcaggaagcc
     2101 aggccgctgt gcgcggacga cgcggcggtg gcggcgctgc aggcggcgat cgcgccggcg
     2161 cgggcctggc cgccgcgcga gtacttcgtc gccaagcgcg aggaacagcg cgcgcgccat
     2221 gcgcgcttcg gcgacaccgc cgacaacctc gagcccaacc tcaaggaagg gcccggcggc
     2281 ctgcgcgacg tgcagacgct gcgctggatg gcgctgcgcg tgctcggcgc ccgcgacctg
     2341 cagcagctgg tggcgctcgg ccagttcggc gccgacgaat tcgccacgct cgaccgcgag
     2401 cggcgcgcgc tggcgcgcct gcgcttcggc ctgcacctgg tcgcgcggcg gcgcgaggag
     2461 cggctgcgct tcgaccacca gaaggcactg gccgcgcgcc tggggttcgc cgacgccgat
     2521 ggcgcgctcg ccgtcgaaca gatgatgcag ggcttctacc gcagcgccgc gctggtgctg
     2581 cggatcaacg agcggctgct gcagcgcttc gaggaggagc tggaaggcga ggtcgcgccg
     2641 gaagccgtcg acgacgcgca cgagctgcgc cgcggctacc tcgccgcacg cgcgccgcag
     2701 tggccggacg gcgacgcggg cagggtgttc gcgctgttcg cggcgtgggc cacccacccg
     2761 cgcgtgcgcg gactgcattc gcggacggcg cgcgcgctgg ccgaggcgtt gccggcgatt
     2821 cccccctacg acgcggcgcc gcccgcgctg cgcgcggcgt tcatggcgct gctgcgcggc
     2881 ccgcagccgg tggaaaccct tgcgcggatg gcgcggctcg gggtgctcgg gcgctggatc
     2941 ccggcgttcg cgcgcgtttc cggacgcatg cagttcgacc tgttccacgt ctacaccgtc
     3001 gaccagcaca cgctggccgt gctgcgcaac atcgcgacct tctccgccgg cgaaccggac
     3061 ccgcgcttcg ccatcgcgca cgaggtgtgg ccccgcctgc gcaaacccga gttgctgctg
     3121 ctcgcggcgc tgttccacga catcgccaag ggccgcggcg gcgaccattc cgaactgggc
     3181 gcggtcgacg cccgtgcgtt ctgcagcgcg cacggactcg gagaggccga cacggcgctg
     3241 gtcgcctggc tggtgcagaa gcacctgctg atgtcggtga ccgcgcagaa gcaggacatc
     3301 ggcgatcccg aggtgatcca ccgtttcgcc cgcgaggtcg ccgaccgcga gcgactcgac
     3361 ctgctgtacc tgctgacctg cgccgacatc gccggcacgt cgcccaagct gtggaacgca
     3421 tggaaggacc gcctgctggc cgacctgcat accgcgaccc ggctggcgct gcggcgcggt
     3481 ctcgagcacc cggtcgccgc gggcgaacgc gtggccgaga cgcgcgcggc cgccgaggcg
     3541 cggctcggcg gcgaaggcat ggacgaagcc gaaatcgcgc ggctgttcgc ggcgatgccg
     3601 gaggaaagtt tcctgcgcgg ccggcccgac caggtcgcgt ggcaggcggc cgcgatgcgc
     3661 gggctcgcgc cgggcgcgac ccg
//
LOCUS       DATIQC010000533         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_423172, whole genome shotgun sequence.
ACCESSION   DATIQC010000533 DATIQC010000000
VERSION     DATIQC010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423172"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VLM17_11440"
     CDS             <1..292
                     /locus_tag="VLM17_11440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66200.1"
                     /translation="RRCGEDTVRRRDGFMRAFDAQCMAPGEAYGAMEECGRGLEQRFG
                     FPDPQCPGQSPMDDYARRMGSTLPAPVAEAGPQASKAAGGTGGGSGGQPTAR"
     gene            368..1003
                     /locus_tag="VLM17_11445"
     CDS             368..1003
                     /locus_tag="VLM17_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HSR66201.1"
                     /translation="MKTILVASSKGGVGKSTLATHLAAHAALAGQRTVLVDADPQGSS
                     TRWAQKRAGLESAVLPVDGTQADRGWQRALPAGTQQVIVDAAAGAMAPALAPFLEHAE
                     AVVVPVLPSTIDIEATVPFLDTLARHPRVRRGELRVGLVGNKLKPWTTGSQQALELLR
                     QWPYPLVAQLRDSQAYAVLVGLGKSLFDYHSAQVREHQADWQPLQRWLRRA"
     gene            1125..1601
                     /locus_tag="VLM17_11450"
     CDS             1125..1601
                     /locus_tag="VLM17_11450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011035432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HSR66202.1"
                     /translation="MRELILLRHAHAEAAAPGQADLDRPLSPEGLAEAEAAGRWLAEH
                     GLVPDCVLCSPARRTRETLEAVLGAVGYVDQRLEDAIYEATPGALAALADSHRDVGRL
                     LIVGHNPGIERLAALMHRGQSGDYRGMPPGGIAVLTLPAQAAIEPGVASLTAFWWP"
     gene            1598..>2083
                     /locus_tag="VLM17_11455"
     CDS             1598..>2083
                     /locus_tag="VLM17_11455"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HSR66203.1"
                     /translation="MSARAATVLLLLACGLAAGLARATEIDPGTSHIGFRLTTRWGQT
                     LQGRFPDSGGVVQSLADGRHQVRLRLSTRTVEIIGHPTYTRLARGYGFFDAIAYPEVE
                     FVSDPYAPQLLRDGGPLPGVLSIRDVRRREVFTIEPSGCAAPARDCDVVGSGSIRRGD
                     FG"
BASE COUNT          268 a          792 c          767 g          256 t
ORIGIN      
        1 gcgccgttgc ggcgaggaca ccgtgcgccg ccgcgacggc ttcatgcgcg cgttcgacgc
       61 gcagtgcatg gcgccgggcg aggcctacgg ggcgatggag gaatgcggcc gagggctcga
      121 gcagcgcttc ggcttccccg acccgcaatg cccgggccag agcccgatgg acgactacgc
      181 gcggcgcatg ggcagcaccc tgcccgcgcc cgtcgcggag gcgggtccgc aggcgtcgaa
      241 ggcggccggc ggtacgggcg gcggcagcgg cggccagccc accgcgcgct gacggcgcga
      301 acccgcgccg ggcgcgcgcg tcccggcgaa ccgtgtaggc tcgcgcaagg gcaacgggga
      361 gaccgcgatg aagaccatcc tggtggccag ttccaagggc ggcgtcggca agtccacgct
      421 cgccacccat ctcgccgcgc acgcggcgct cgccggccag cgcacggtgc tcgtcgacgc
      481 cgacccgcag ggctcgtcca cgcgctgggc gcagaagcgc gcggggctgg agagcgcggt
      541 actgccggtc gacggcaccc aggccgaccg cggctggcaa cgcgcattgc cagcgggcac
      601 gcagcaggtg atcgtcgatg ccgccgcggg cgcgatggca cccgcactgg cgcccttcct
      661 cgagcacgcc gaggccgtgg tcgtgccggt gctgccctcg acgatcgaca tcgaagccac
      721 cgtgcccttc ctcgacaccc tggccaggca cccgcgcgtg cgccgcggcg agctgcgcgt
      781 gggcctggtc ggcaacaagc tcaagccgtg gacgaccggc tcgcagcagg cgctggagct
      841 gctgcggcaa tggccctatc cgctggtggc gcagctgcgc gacagccagg cgtacgcggt
      901 gctggtcggg ctgggcaaga gcctgttcga ctaccactcc gcgcaggtgc gcgagcacca
      961 ggccgactgg cagccgttgc agcgctggct gcgcagggcc tgaaccgccg ccggcgggcg
     1021 cggcatccac gcgcgggcgt gcacgccgcg ttcgcgccgc cggctggtag tgatggcgcc
     1081 caccccttgg cttgcgacgc aaccccgacc gctcccggag ccccatgcgc gaactgatcc
     1141 tgctccgcca cgcccacgcc gaagccgccg cgcccggcca ggccgacctc gaccgcccgc
     1201 tctcgccgga aggcctcgcc gaggccgaag ccgcgggccg ctggctggcc gaacacgggc
     1261 tggtgcccga ttgcgtgctg tgttcgccgg cgcgccgcac gcgcgagacg ctggaagcgg
     1321 tgctgggcgc cgtcggctac gtcgaccagc gcctcgagga cgcgatctac gaggccacgc
     1381 cgggcgcgct ggccgcgctc gccgacagcc accgcgacgt cggccggctg ctgatcgtcg
     1441 gacacaatcc gggcatcgaa cgcctcgctg ccctcatgca cagaggccag tcgggcgact
     1501 accgcggcat gccgccgggc ggcatcgcgg tgctgaccct gcccgcgcag gccgcgatcg
     1561 aacccggcgt ggccagcctg accgccttct ggtggccgtg agcgcgcgcg cggccaccgt
     1621 cctgttgctg ctggcgtgcg ggctcgccgc cgggctggcg cgcgcgacgg agatcgaccc
     1681 gggaacctcg cacatcgggt tccgcctgac cacgcgctgg ggccagaccc tgcagggccg
     1741 tttccccgac agcggcgggg tggtccagtc gctcgccgac ggtcgccacc aggtgcgcct
     1801 gcggctgtcg acgcgcacgg tcgagatcat cggccatccg acctacaccc ggctggcgcg
     1861 cggatatggc ttcttcgacg cgatcgccta tccggaagtg gagttcgtat ccgatcccta
     1921 cgcgccgcag ctgctgcgcg acggcggccc gctgccgggc gtgctgtcga tccgcgacgt
     1981 gcgccggcgc gaggtgttca ccatcgagcc gtccggctgc gccgcgccgg cgcgcgactg
     2041 cgacgtggtc ggttccggca gcatccgccg cggcgacttc ggc
//
LOCUS       DATIQC010000534         7578 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_423183, whole genome shotgun sequence.
ACCESSION   DATIQC010000534 DATIQC010000000
VERSION     DATIQC010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7578
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423183"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1473)
                     /locus_tag="VLM17_11460"
     CDS             complement(<1..1473)
                     /locus_tag="VLM17_11460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HSR66204.1"
                     /translation="MADPSTPAHLRDEASTDALPVAPALGASLQAARMPRRSTLVEPR
                     VLFVCALAVLLGIAAALVAQILVRLIALVTNVAFFGRWSLETVSPAGHHLGPWVILVP
                     VAGGLVVGAMARWGSRAIRGHGIPEAMEQVLLNESKIPPRITFLKPVSSAIAIGTGGP
                     FGAEGPIIATGGALGSFLGQLLHVTGQERKVLLAAGAAGGMTAIFGAPVSAVILAIEL
                     LLFELRPRSLIPVAMAAVTAAGMRDVLVGGAPVFPMPAVATPGLAALLCYVLLGAAMG
                     FVSVGVTRLVYGIEDAFEKLPVHWMWWPAIGGLAVGIVGWFAPLTLGVGYTNIEAIVA
                     GKFAVGALAFLCVMKFISWSIALGSGTSGGTLAPLFTVGGALGALAGFALVALAPRLG
                     VDPRIAGLVGMAAIFAGASRALLASVVFAFETTHQPAGLLPLLGGCSAAYLVSALTMR
                     NTIMTEKIARRGVRVPTEYAADYLDQVLVRDSASRNVTALK"
     gene            complement(1561..2472)
                     /gene="cyoE"
                     /locus_tag="VLM17_11465"
     CDS             complement(1561..2472)
                     /gene="cyoE"
                     /locus_tag="VLM17_11465"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003465323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HSR66205.1"
                     /translation="MAASAIRQYWSLTKPRVVALIVFCAVIGMFLAVPGLPPWKPALL
                     GTLGIWLAASSAAAINQLLDTRIDAQMARTSWRPLVAGTLTPRQALAFALVLGALSMG
                     LLWFFVNHLTAALTFASLIGYAIVYTVWLKRATPQNIVIGGIAGAAPPALGWAAVTGE
                     LHHHALLLVLIIFVWTPPHFWALAIFRREDYKRAMVPMLPVTHGVEYTRWQILLYTLL
                     LVVATVLPWATGMSGLFYLGGALVLGLVFLWHAWRLMDPPDEFYAMRVFNYSIVYLMA
                     LFAFLLVDHWLLPWLQPAAAFQLRAAG"
     gene            complement(2482..3633)
                     /locus_tag="VLM17_11470"
     CDS             complement(2482..3633)
                     /locus_tag="VLM17_11470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017356565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HSR66206.1"
                     /translation="MPPALAKPTTYRHFHRLAWLACAFAFCVIVFGAFVRLSNAGLSC
                     PDWPTCYGRAAWPSATHEISNQAATAIRPLDATKAWREQVHRMLAGTLGVLVLGLALL
                     AARRRKYGIAQILLAALFVACSIPLYMHARYVPAAVLAACGEGLLLAAALRWSNADLA
                     RTAVLTLATIVFQALLGMWTVTWLLKPIVVMGHLLGGLLTFSLLTWMAWRATHLPIRL
                     PDGALLRRLLGLGLGLLAVQIALGGWTSSNYAALSCGLDFPKCVGQWWPPHDFREGFV
                     LWRGVGVDYEGGVLDGQARIAIQMAHRMMAGVVFVYLLWLGSKFLRTPGMRGHGVLLA
                     LLVCAQVGLGIANVRLGLPLRVAVLHNAGAALLLFELVGLRARVRPPEA"
     gene            complement(3635..4231)
                     /locus_tag="VLM17_11475"
     CDS             complement(3635..4231)
                     /locus_tag="VLM17_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014506320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66207.1"
                     /translation="MTPTSQDVRRNRGVLLLIVALFLGSMLLAGILRFSGWRPAGTKN
                     FGELLSPPGDLRAATPALVEGGDYRWEPRARLWRILVAPPAGCGDACPRVAGQLDVVW
                     QLMGKDADHVHVLWLCAEDAHCEVPAPLGREPALRRLRADDALRAALPRNDTDAATLQ
                     RGLPVYVIDPNGFVILRYAPGFDPAGLRADLAKLTKLM"
     gene            complement(4228..4959)
                     /locus_tag="VLM17_11480"
     CDS             complement(4228..4959)
                     /locus_tag="VLM17_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HSR66208.1"
                     /translation="MSRRRPLAAGWALALLVAVLFARLGVWQLDRMHRKEAMLAAAQS
                     VLARRVPQPLALAADPAAARDYAWAAGDGRFPDLPAVLLDNQERDGRAGVRAYRVFAP
                     EHAAPLLVELGWLPVPGDRRMPRVPVPAVRHVAGLLAPPPSAGLARPIAQPQPDGSLL
                     LVALDLPLLRGALHLPALSPRVLKLDPALPPAYPRDLDILPNTLPPARHLGYAVQWFG
                     LAFTVLAIALVLTLRKPKSSRRPAP"
     gene            5026..5250
                     /locus_tag="VLM17_11485"
     CDS             5026..5250
                     /locus_tag="VLM17_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin transmembrane helix small protein"
                     /protein_id="HSR66209.1"
                     /translation="MNDSLKTLLIIAFLVVILWNLGAGLYYMLVDKGTTKRTVNALTR
                     RIALSVALILFVALAIYMGWITPHGIGRAA"
     gene            complement(5321..6205)
                     /locus_tag="VLM17_11490"
     CDS             complement(5321..6205)
                     /locus_tag="VLM17_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014035726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HSR66210.1"
                     /translation="MAQAHTDAHDPNVYFVPHGSRWPVFASVALFVTMVGFSGWLNEF
                     GWGRPTFLVGVAALAAILFKWFGDVIHESLRGYYNKQVDTSFRMGMMWFIFSEVMFFA
                     AFFGALFYARQYAMPWLTGEGDGVATNALLYPGFSAGWPSNGPASIGGHFQIVPAWGL
                     PLLNTLILLSSGVTVTIAHHALKAGHRKQLMWFLGATILLGASFLYFQATEYMEAYRE
                     LNLTLGSGIYGSTFFMLTGFHGAHVTLGTIMLAVIWLRCLKGHFTAEDHFAFEAVAWY
                     WHFVDVVWLGLFLFVYVL"
     gene            complement(6234..6821)
                     /locus_tag="VLM17_11495"
     CDS             complement(6234..6821)
                     /locus_tag="VLM17_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016902805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HSR66211.1"
                     /translation="MNAPRQTGIARLVGIALAAFALTFSLVPLYRIACEKVFGVRLEK
                     GPASAAGKERDGMRRWVTVEFDGGVNSRLPWAFKPEQLRMRVHPGQQYEAKYSARNIG
                     DHAIVGNAVPSLAPARASGYFSKTECFCFTAQTLQPGEARDMPVRFIVDPALPADVTT
                     ITLSYTFYKNATLTAQLDAHAGHPAGASAAPLAAP"
     gene            complement(6818..6961)
                     /locus_tag="VLM17_11500"
     CDS             complement(6818..6961)
                     /locus_tag="VLM17_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013533868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66212.1"
                     /translation="MAREPLTPLTPADAAARRRGVLRTVWIMAAIAIAVYVAFLLTGI
                     LPR"
     gene            complement(6969..>7578)
                     /locus_tag="VLM17_11505"
     CDS             complement(6969..>7578)
                     /locus_tag="VLM17_11505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014501708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HSR66213.1"
                     /translation="MWGGSLTFESPMLWAIAFVILFTIGGFSGLMLAIVPADFQYHDT
                     YFVVAHFHYVLVTGALFAIIAAVYYWWPKWTGRMYSMGMANFHFWWTMIFVNLLFFPQ
                     HFLGLAGMPRRIPDYNVVFADWNLVSSIGAFGMFVTPFLMAWILWSSLRSGAPAAARA
                     WEGARGLEWTVPSPAPHHTFSTPPVIRDEDLAHGDFAHQDYD"
BASE COUNT         1281 a         2620 c         2774 g          903 t
ORIGIN      
        1 cttgagcgcg gtgacgttgc gcgaggcgct gtcgcgcacc agcacctggt ccaggtaatc
       61 ggccgcgtac tcggtcggca cgcgcacgcc gcgccgcgcg atcttctcgg tcatgatcgt
      121 gttgcgcatg gtcagcgccg acaccaggta ggcggcgctg cagccgccga gcagcggcag
      181 caggcccgcc ggctggtggg tggtctcgaa ggcgaacacg accgaggcca gcagcgcgcg
      241 cgaggcgccg gcgaagatcg ccgccatgcc gaccaggccg gcgatgcgcg ggtccacgcc
      301 gagccgcggc gccagcgcga ccagggcgaa gcccgccagc gcgccgagcg cgccgccgac
      361 ggtgaacagc ggcgccagcg tcccgcccga ggtgccgctg ccgagcgcga tcgaccagga
      421 gatgaacttc atcacgcaca ggaaggcgag cgcgccgacc gcgaacttcc ccgcgacgat
      481 cgcctcgatg ttggtgtagc cgacgccgag cgtgagcggc gcgaaccagc cgacgatgcc
      541 gaccgcgagg ccgccgatgg ccggccacca catccagtgc accggcagtt tctcgaaggc
      601 gtcctcgatg ccgtagacca gccgggtgac gcccacgctg acgaaaccca tcgcggcgcc
      661 gagcagcacg tagcacagca gcgcggcgag gccgggcgtg gccacggcgg gcatcgggaa
      721 caccggcgcg ccgccgacca gcacatcgcg catcccggcg gcggtgaccg ccgccatcgc
      781 gacgggaatg agcgagcgcg ggcgcagttc gaacagcagc agttcgatcg cgaggatcac
      841 cgccgacacc ggcgcgccga agatcgcagt catgccgccg gccgcgcccg cggcgagcag
      901 caccttgcgc tcctggccgg tgacgtgcag cagctggccg aggaaggagc cgagcgcgcc
      961 gccggtggcg atgatcggac cttcggcacc gaacgggccg ccggtgccga tcgcgatcgc
     1021 cgaggagacc ggcttgagga acgtgatccg cggcgggatc ttcgattcgt tgagcagcac
     1081 ctgctccatc gcctcgggga tgccgtggcc gcggatcgcg cgcgaacccc agcgcgccat
     1141 cgcacccacg accaggccgc cggcgaccgg caccaggatc acccacgggc cgaggtggtg
     1201 gcccgcgggc gacaccgtct ccagcgacca gcggccgaag aaggccacgt tggtgaccag
     1261 cgcgatgagc ctgaccagga tctgcgcgac cagcgccgcg gcgatgccga gcagcaccgc
     1321 cagcgcgcaa acgaacagca cccgcggctc gaccagggtg gagcggcgcg gcatgcgcgc
     1381 ggcctgcagg ctcgcgccga gcgcgggcgc gaccggcagc gcgtcggtgc tggcttcgtc
     1441 acgcaggtgt gcgggcgtgg agggatcggc catcggcatc gctgcagtgc aacaaggagc
     1501 ggtgatgcta cgccgtcgac gcgcggtttt caggtggttg cgacaccttt ccgcaggctg
     1561 tcagcccgcg gcccgcagct ggaacgccgc cgccggctgc agccacggca gcagccagtg
     1621 gtcgaccagc aggaaggcga acagcgccat caggtacacg atcgagtagt tgaacacccg
     1681 catcgcgtag aactcgtcgg gcggatccat caagcgccag gcgtgccaga ggaacaccag
     1741 gccgagcacg agcgcgccgc cgaggtagaa caggccgctc atcccggtgg cccacggcag
     1801 caccgtcgcg acgaccagca gcagcgtgta caggaggatc tgccagcggg tgtattcgac
     1861 gccgtgggtc accggcagca tcggcaccat cgcgcgcttg tagtcctcgc ggcggaagat
     1921 ggcgagcgcc cagaagtgcg gcggcgtcca cacgaagatg atcagcacca gcagcagcgc
     1981 gtggtggtgc agctcgccgg tgaccgcggc ccagccgagc gccggcggcg ccgcgccggc
     2041 aatgccgccg atcacgatgt tctgcggcgt ggcgcgcttg agccacaccg tgtagacgat
     2101 cgcgtagccg atcagcgagg cgaaggtcag cgcggcggtg aggtggttca cgaagaacca
     2161 cagcagcccc atcgacagcg cgccgagcac cagcgcgaag gcgagcgcct gccgcggcgt
     2221 gagcgtgccg gcgaccagcg gccgccagga cgtgcgcgcc atctgcgcat cgatgcgggt
     2281 gtcgagcagc tggttgatcg ccgccgcgct cgaggcggcg agccagatgc cgagcgtgcc
     2341 gagcagcgcc ggcttccacg gcggcaggcc cggcaccgcg aggaacatgc cgatcaccgc
     2401 gcagaacacg atcagcgcga ccacgcgcgg cttggtaagg ctccagtact ggcggatcgc
     2461 gctcgcggcc atcgtgtgcg ctcaggcttc gggcgggcgc acgcgcgcgc gcaggccgac
     2521 cagttcgaac agcagcagcg cggcgcccgc gttgtgcagc accgccacgc gcaggggcag
     2581 gccgagccgg acattggcga tgcccaggcc cacctgcgcg cacaccagca gcgcgagcag
     2641 cacgccgtgc ccgcgcatgc cgggcgtgcg caggaacttc gagcccagcc acagcaggta
     2701 cacgaacacg acccccgcca tcatccggtg ggccatctgg atcgcgatgc gcgcctggcc
     2761 gtcgagcacg ccaccttcat agtcgacgcc gacgccgcgc cagagcacga agccttcgcg
     2821 gaaatcgtgc ggcggccacc attggccgac gcacttgggg aagtcgagtc cgcacgacag
     2881 cgcggcgtag ttgctgctgg tccagccgcc gagcgcgatc tggaccgcga gcaggccgag
     2941 cccgaggccg agcaggcggc gcagcagcgc gccgtcgggc aggcggatcg gcaggtgggt
     3001 cgcgcgccac gccatccagg tgagcagcga gaaggtgagc aggccgccca gcaggtggcc
     3061 catcaccacg atcggcttga gcagccaagt caccgtccac atgccgagca gtgcctggaa
     3121 gacgatggtg gccagggtca gcacggcggt gcgcgcgagg tccgcgttcg accagcgcag
     3181 cgcggcggcc agcagcaggc cctcgccgca ggccgcgagc accgccgccg gcacgtagcg
     3241 cgcgtgcatg tacagcggga tcgagcaggc gacgaacagc gccgcgagca ggatctgcgc
     3301 gatgccgtac ttgcgcctgc gcgcggcgag cagcgccagg cccagcacca gcacgccgag
     3361 cgtgccggcg agcatgcggt gcacctgttc gcgccaggcc ttggtggcgt cgagcgggcg
     3421 gatcgcggtc gcggcctggt tggagatctc gtgggtcgcg ctgggccacg cggctcggcc
     3481 gtagcaggtc ggccagtcgg ggcagctgag gccggcgttg gacaggcgca cgaacgcgcc
     3541 gaacacgatc acgcagaacg cgaacgcgca ggccagccag gcgaggcggt ggaagtgtcg
     3601 atacgtggtc ggcttggcga gtgcgggcgg catgtcacat caacttggtg agcttggcca
     3661 ggtcggcgcg caggcccgcc ggatcgaagc cgggagcgta gcgcagtatg acgaagccgt
     3721 tgggatcgat cacgtacacc ggcaggccac gctgcagcgt cgcggcatcg gtgtcgttgc
     3781 gcggcagcgc ggcgcgcagc gcgtcgtcgg cgcgcaggcg gcgcagcgcg ggctcgcgcc
     3841 cgagcggcgc gggcacctcg caatgcgcgt cctcggcgca cagccacagc acgtgcacgt
     3901 ggtcggcgtc cttgcccatc agctgccaga cgacatcgag ctggccggcc acgcgcggac
     3961 aggcatcgcc gcacccggcg ggcggcgcga cgaggatgcg ccacagccgc gcgcgcggct
     4021 cccagcggta gtcgccgccc tcgaccagcg ccggcgtcgc cgctcgcagg tcgcccggcg
     4081 gcgacagcag ctcgccgaag ttcttcgtcc ccgcgggacg ccagccggag aaccgcagga
     4141 tgccggccag cagcatgctg ccgaggaaca gcgcgacgat cagcagcagc acgccgcggt
     4201 tgcggcgcac gtcctgggac gtgggggtca tggagcgggt ctccgggagg acttcggctt
     4261 gcgcagggtc agcaccagcg cgatcgccag cacggtgaac gcgaggccga accactgcac
     4321 cgcgtagccg aggtggcgcg cgggcggcag cgtgttgggc aggatgtcga ggtcgcgcgg
     4381 ataggcgggc ggcagcgcgg gatcgagctt gagcacgcgc ggcgagagcg cgggcaggtg
     4441 cagcgcaccg cgcagcagcg gcaggtcgag cgcgaccagc agcaggctgc cgtccggctg
     4501 cggctgcgcg atcggccgcg ccagcccggc cgacggcggc ggcgcgagca ggccggcgac
     4561 gtggcgcacg gcgggcaccg gcacgcgcgg catgcgccga tcgccgggga ccggcagcca
     4621 gccgagttcg accagcagcg gcgcggcgtg ctccggcgcg aacacgcggt acgcacgcac
     4681 gcccgcgcgg ccgtcgcgct cctggttgtc cagcagcacc gccggcaggt cggggaagcg
     4741 gccgtcgccc gccgcccatg catagtcgcg cgcggcggcc gggtcggccg cgagcgccag
     4801 cggctgcggc acgcggcgcg cgagcaccga ctgcgcggcg gccagcatcg cttccttgcg
     4861 gtgcatgcgg tccagctgcc agacgcccag gcgcgcgaac agcacggcca ccagcagcgc
     4921 cagcgcccag ccggcggcga gcggtcgcct cctgctcacc ttggcccggt ccgcgggtgc
     4981 gataattcct tcctcgcgcc acgcgcgcgc acgcgggccc gtgccatgaa cgactccctc
     5041 aagaccctgc tgatcatcgc gttcctggtg gtcatcctct ggaacctcgg cgccgggctc
     5101 tactacatgc tggtcgacaa gggtacgacc aagcgcacgg tcaacgccct gacccgtcgc
     5161 atcgcgctct cggtggcact gatcctgttc gtggccctgg ccatctacat gggctggatc
     5221 acgccgcacg gcatcggccg cgccgcctga ccgagtggtg gaccccgaag cagaaaaggc
     5281 cggcgcgatg ccggcctttt cgttgccgcc gccgcgccgc ttacagcacg tagacgaaca
     5341 ggaacaggcc gagccagacc acgtcgacga agtgccagta ccaggccacc gcctcgaagg
     5401 cgaagtggtc ttcggcggtg aagtggccct tcaggcagcg cagccagatc accgccagca
     5461 tgatcgtgcc gagggtgacg tgcgccccgt ggaagccggt gagcatgaag aacgtcgagc
     5521 cgtagatgcc cgacccgagg gtcaggttga gctcgcggta ggcctccatg tactcggtgg
     5581 cctggaagta caggaaggac gcgccgagca ggatggtggc gccgaggaac cacatgagct
     5641 gcttgcggtg gccggccttg agcgcgtggt gcgcgatcgt caccgtcacg cccgaggaca
     5701 gcaggatcag cgtgttgagc agcggcaggc cccacgccgg cacgatctgg aagtggccgc
     5761 cgatcgaggc cgggccgttg ctcggccagc cggccgagaa gcccgggtac agcagcgcgt
     5821 tggtggccac gccgtcgcct tcgccggtca gccacggcat cgcgtactgg cgggcgtaga
     5881 acagcgcgcc gaagaacgcg gcgaagaaca tcacctcgga gaagatgaac cacatcatcc
     5941 ccatgcggaa cgaggtgtcg acctgcttgt tgtagtagcc gcgcagcgat tcgtggatca
     6001 cgtcgccgaa ccatttgaac aggatcgccg ccagcgccgc gacgccgacg aggaaggtcg
     6061 gccggcccca gccgaattcg ttcagccaac cggagaatcc gaccatggtg acgaacagcg
     6121 ccaccgaggc gaacaccggc cagcggctgc cgtgcggcac gaaatagacg ttgggatcgt
     6181 gggcgtcggt atgcgcttgt gccatggcgg gtggttccgg ttcgaaggct ggatcagggc
     6241 gccgcgagcg gcgcggccga cgcgccggcg ggatggccgg cgtgcgcgtc gagctgcgcg
     6301 gtcagggtgg cgttcttgta gaaggtgtag gacagcgtga tcgtggtgac gtcggccggc
     6361 agcgccggat cgacgatgaa gcgcaccggc atgtcgcgcg cttcgcccgg ctgcagggtc
     6421 tgcgcggtga agcagaagca ttcggtcttg ctgaagtagc cggacgcgcg cgccggcgcc
     6481 agcgacggca ccgcgttgcc gacgatcgca tggtcgccga tgttgcgggc cgaatacttc
     6541 gcctcgtact gctgtccggg atgtacgcgc atgcgcagct gctcgggctt gaacgcccac
     6601 ggcagcctgg aattgacgcc accgtcgaac tcgacggtga cccagcgccg catgccgtcg
     6661 cgttccttgc cggcggcgct ggcggggccc ttctccagcc gcacgccgaa caccttctcg
     6721 caggcgatcc ggtacagcgg caccagcgag aaggtgagcg cgaacgcggc cagcgcgatg
     6781 ccgaccagcc tggcgatgcc cgtctggcgc ggcgcgttca cctgggcagg atcccggtga
     6841 gcaggaaggc gacgtacacg gcgatcgcga tcgcggccat gatccacacc gtgcgcagca
     6901 cgccgcgcct gcgcgcggcg gcgtcagccg gggtcagcgg ggtcaggggc tcgcgcgcca
     6961 tcgccggctc agtcgtagtc ctggtgggcg aagtcgccgt gggcgaggtc ctcgtcgcgg
     7021 atcaccggcg gcgtggagaa ggtgtggtgc ggggccggcg agggcaccgt ccactccagg
     7081 ccccgcgcgc cttcccaggc acgcgccgcg gccggcgcgc cgctgcgcag cgagctccac
     7141 aggatccacg ccatcaggaa gggcgtgacg aacatgccga acgcgccgat cgagctgacc
     7201 aggttccagt ccgcgaacac cacgttgtag tccgggatgc ggcgcggcat gccggccagg
     7261 ccgaggaagt gctgcgggaa gaacagcagg ttgacgaaga tcatcgtcca ccagaaatgg
     7321 aagttggcca tccccatgct gtacatgcgg ccggtccact tgggccacca gtagtacacc
     7381 gccgcgatga tcgcgaacag cgcgccggtc acgagcacgt agtggaagtg cgcgaccacg
     7441 aagtaggtgt cgtggtactg gaagtccgcc ggcacgatcg cgagcatcag gccggagaag
     7501 ccgccgatgg tgaacaggat cacgaacgcg atcgcccaca acatcggcga ttcgaacgtc
     7561 agcgagccgc cccacatc
//
LOCUS       DATIQC010000535         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_282163, whole genome shotgun sequence.
ACCESSION   DATIQC010000535 DATIQC010000000
VERSION     DATIQC010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_282163"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VLM17_11510"
     CDS             complement(<1..684)
                     /locus_tag="VLM17_11510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019303869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HSR66214.1"
                     /translation="MTLPDPAGPAARIVRVPDDRAGQRLDNFLLGQLKGAPRSLVYKL
                     VRSGQVRVNGGRVKAERRLEGGDEVRIPPVRLAEPGGQGVPAKGLLEAMEASIVFEDA
                     RLLAINKPSGVASHGGSGISFGAIETLRALRPQESLELVHRLDRDTSGLLVVAKKRSA
                     LSELQALMREDQAVKGMGIAKRYLALLVGRLPDGVLTVDAPLHVGLRQGGERHVQVHA
                     SGKPSRSHFK"
     gene            1110..>1709
                     /locus_tag="VLM17_11515"
     CDS             1110..>1709
                     /locus_tag="VLM17_11515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015471921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HSR66215.1"
                     /translation="MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKG
                     RITRLEPSLEAAFVEYGAERHGFLPLKEISRDYFQAGVDPHKATLRELLREGQEVVVQ
                     VDKEERGNKGAALTTFISLAGRYMVLMPNSPTAGGVSRRIEGDDRAALKEAMDKLAIP
                     DDMGVIIRTAGVGRDAEELQWDLDYLLSVWKAIADAALTK"
BASE COUNT          299 a          606 c          573 g          231 t
ORIGIN      
        1 cttgaagtgg ctgcgcgacg gcttgccgga cgcgtggacc tgcacgtgcc gctcgccgcc
       61 ctggcgcagg ccgacgtgca acggcgcatc gaccgtcagt acgccgtccg gcaggcgccc
      121 gaccagcaac gcgagatagc gcttggcgat gcccatgccc ttgacggcct ggtcctcccg
      181 catcaatgcc tgcagttcgg acagcgccga gcgtttcttg gcgacgacca gcagcccgga
      241 agtgtcgcgg tcgagccggt gcaccagctc cagcgactcc tgtggccgca gcgcgcgcag
      301 ggtctcgatc gccccgaagg aaatgccgct gccgccatgg ctggccacgc cggagggctt
      361 gttgatcgcc agcagccgcg cgtcctcgaa gacgatgctg gcctccatcg cctccagcag
      421 gcctttcgcc ggcacgccct gcccgcccgg ttcggccagc cgcaccggcg ggatgcgcac
      481 ctcgtcaccg ccctccagcc ggcgctcggc cttcacccgg ccgccgttga cgcgcacctg
      541 cccggaacgc accagcttgt agaccagcga acgcggcgcg cccttgagct ggccgagcag
      601 gaagttgtcc aggcgctggc cggcgcggtc atcgggaacc cggacgatgc gggcggccgg
      661 gccggccggg tcgggaaggg tcatccggga gcctgatctg ttacactcgg cgggcgagat
      721 aagggtttga tttcgcaggg agttgccgac caggcgccga gtgcgccggg aaagccgggc
      781 cgaaagccca ccttccgcga tcccgacgca gtgcgcgacc accgcccccg gggcggccat
      841 gttagcggct cgtcggcagg cccggccatc gccggatggc tgacacccat tccgtgcttt
      901 gaacacgacc cgcgtggcag caacgcccga cgtcgccgcc ccggcctagc aaccaaaatc
      961 gaaaagcgct cccgcggtcc gccgtggtgt cgtagcgctg gaacacttga ggccgccccg
     1021 gccgcgcgat gcgcgacgga gcggctcgcg gtatccagag gcaaacgcca tggcgtttcc
     1081 gcgcaggaca gcgcgcgagg aacgcaacaa tgaaacgcat gctgatcaac gccacgcagg
     1141 cagaggaact gcgcgtggcc atcgtcgacg gccagacgct ctacgacatc gacatcgagc
     1201 agccgtcgaa ggaacagaag aagtccaaca tctacaaggg ccgcatcacc cggctcgaac
     1261 cttcgctgga agcggccttc gtcgaatacg gcgccgagcg ccacggcttc ctgccgttga
     1321 aggaaatctc ccgcgactac ttccaggccg gtgtcgaccc gcacaaggcg acgctgcgcg
     1381 aactgctgcg cgaaggccag gaagtggtgg tccaggtcga caaggaggaa cgcggcaaca
     1441 agggcgcggc cctgaccacg ttcatctcgc tggccggccg ctacatggtg ctgatgccga
     1501 attcgccgac cgcgggcggc gtgtcgcgcc gcatcgaggg cgacgatcgc gccgcgctca
     1561 aggaggcgat ggacaagctc gccatccccg acgacatggg ggtgatcatc cgcaccgccg
     1621 gcgtcggccg cgatgccgaa gagctgcagt gggacctcga ctacctgctc agcgtgtgga
     1681 aggcgatcgc ggacgccgcg ctcaccaag
//
LOCUS       DATIQC010000536         4705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_317402, whole genome shotgun sequence.
ACCESSION   DATIQC010000536 DATIQC010000000
VERSION     DATIQC010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317402"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VLM17_11520"
     CDS             complement(<1..504)
                     /locus_tag="VLM17_11520"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399590.1"
                     /note="catalyzing the hydrolysis of
                     4-imidazolone-5-propionate to N-formimidoyl-L-glutamate,
                     the third step in the histidine degradation pathway;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HSR66216.1"
                     /translation="MVVGASLATLDGDGYAAIEDGVLGWRDGRIAFVGPRASLPDAPR
                     ALADRVIEADGWITPGLVDCHTHLVFAGDRAREFELRLQGASYEEIARAGGGILSTVR
                     AVRAADEGELLAQSLPRARALLADGATTLEIKSGYGLDFDNERKLLRVARQVGDALGV
                     TVRTTFLG"
     gene            complement(528..1856)
                     /locus_tag="VLM17_11525"
     CDS             complement(528..1856)
                     /locus_tag="VLM17_11525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015463422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HSR66217.1"
                     /translation="MPTRDTPSLFDRLLSGADWKRRVALWGGGVAVALAAIAFARASD
                     VAQAGFRWLIAQSPWYALVATPATFALLAWSTTRGLETTRGSGIPQVIAALQLPEDWR
                     RRNLSLKVALAKMMLTVSGLLGGASIGREGPTVHVGAALMHAIGRRFGFRDPRQGTLF
                     LLAGGAAGIAAAFNTPLAGVVFAIEELSGTFEHHFSGTLLTAVIVGGVVSLGVLGNYT
                     YFGNVATALPLGRGWLAVLACGLLCGLAGGLFSRLLLIATDARTRWLGPMRARHPVLL
                     AACCGLALAGLGLAFGDGAFGTGYAQARGLLQDHAAVGHEFGAVKFIANLVSYLAGIP
                     GGLFSPALAVGAGFGHNLAPLLPGVAPTAVVLLGMSAYLTGVTQAPLTSAVISMELTD
                     NSELLLPILATVLIARGASSLVCQQPVYKALALRLLPAGAASMGAGESAT"
     gene            1933..3198
                     /locus_tag="VLM17_11530"
     CDS             1933..3198
                     /locus_tag="VLM17_11530"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008434649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HSR66218.1"
                     /translation="MPAGWQRSAIAGATASDWVVPGIPNLHSHAFQRAMAGLAERQTN
                     PADSFWTWRETMYRFAARFDPDALHAVASQLYVEMLEAGYTTVCEFHYLHHAPDGAPY
                     ADPAAMSRALVQAARDAGIRLTLLPVLYMTGGFDGRALGERQRRFGHDVGAYLRLFDA
                     LHREQDATLRVGCAFHSLRAVPPEAMRDVLAALPADAPRHIHVAEQVGEVQDCLALRG
                     ARPVEWLLANAPVDARWTLVHATHLTEAETLAVALSGATVALCPTTEANLGDGLFPLR
                     AYLDCGGAFGIGSDSQISVSPVEELRWLEYGQRLATRHRNIAVQPGSDSVGETLLRGT
                     LGSGANATGFAAGAGAPVADWLALDADAPQFAGVHPADAVDRWIFSGNRNLVRDVFVD
                     GVRVVEAGRHRDRERVAARFGQAMRALLA"
     gene            complement(3208..3726)
                     /locus_tag="VLM17_11535"
     CDS             complement(3208..3726)
                     /locus_tag="VLM17_11535"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HSR66219.1"
                     /translation="MRHASVVYTSMPSPVGVLLLAADAAGLCLVEFPDPRHPVAPQAG
                     WREGDDAVLEETRRQLGEYFAGTRRDFELPLAPRGTPFQHDVWRALATIPYGTTISYA
                     ELAARIGQPAAMRAVGAANGRNPLPIVVPCHRVIGADGSLTGFGGGLPTKRFLLRLEG
                     VLPREDDLFGAA"
     gene            3870..4415
                     /locus_tag="VLM17_11540"
     CDS             3870..4415
                     /locus_tag="VLM17_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007808010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR66220.1"
                     /translation="MRTAPAVLLASFLCAGGASAQDAAAPPQPPAPTDAECAVFAREL
                     SFAQSVAAHDAQAFAEHVAAGAAFDAGGPAPLHGRDAITRAWAPIVAGKDLRLEWYPA
                     RTTVAGAGDLAWSTGPALIEQRAPGAKQRYLLGRFRSVWQREADGGWRVLFDDGAPPR
                     PATEAEAAAFRAARPAGCPRG"
     gene            4516..>4705
                     /locus_tag="VLM17_11545"
     CDS             4516..>4705
                     /locus_tag="VLM17_11545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66221.1"
                     /translation="MTRLLLAGLLAGVAFAASAQSVGTAVQATVQDATQADAANRDVR
                     DHTCLRETGSLVTASQNRR"
BASE COUNT          661 a         1789 c         1680 g          575 t
ORIGIN      
        1 gccgaggaag gtggtgcgca cggtgacacc gagcgcatcg ccgacttggc gcgcgacccg
       61 cagcagcttg cgttcgttgt cgaagtcgag cccgtagccc gacttgattt ccagcgtcgt
      121 ggcgccgtcg gccagcagcg cgcgcgcgcg tggcagcgac tgcgccagca gctcgccttc
      181 gtccgccgcg cgcaccgcgc gcaccgtcga caggatgccg ccgccggcgc gggcgatttc
      241 ctcgtagctc gcgccctgga gccgcagctc gaattcgcgc gcgcggtcgc cggcgaacac
      301 caggtgggta tggcaatcga ccaggcccgg cgtgatccag ccgtcggcct cgatcacgcg
      361 gtcggcgagc gcccgcggcg catccggcag cgacgcgcgc ggaccgacga aggcgatccg
      421 gccgtcccgc catccgagga cgccgtcctc gatcgccgcg tagccgtcgc cgtccagcgt
      481 ggccagcgat gcccccacca ccagcccgtc gaagcgcgtc gcagtgctca cgtcgccgat
      541 tctccagcgc ccatcgacgc cgcgcccgcg ggcagcaggc gcagcgccag cgccttgtac
      601 accggctgct ggcagacgag gctcgatgcg ccgcgcgcga tcagcacggt cgcgaggatc
      661 ggcagcagca gttcgctgtt gtcggtcaac tccatcgaga tcaccgccga ggtgagcggc
      721 gcctgagtca cgccggtcag ataggcactc atgccgagca gcaccaccgc ggtcggcgcc
      781 acgcccggca gcagcggcgc gaggttgtgg ccgaagcccg cgccgaccgc gagcgcgggc
      841 gagaacagcc cgcccgggat accggcgaga taggacacga ggttggcgat gaacttcacc
      901 gcgccgaatt cgtggccgac ggccgcatgg tcctgcagca gcccgcgcgc ctgcgcatag
      961 ccggtgccga atgcgccatc gccgaaggca agcccgagcc cggcgagcgc caggccgcag
     1021 catgcggcca gcagcaccgg atggcgtgcg cgcatggggc ccagccagcg cgtgcgcgcg
     1081 tcggtcgcga tcagcagcaa ccggctgaac aggccgcccg cgagtccaca caggaggccg
     1141 caggcgagca cggccagcca gccgcggccg agtggcaagg cggtcgcgac gttgccgaag
     1201 taggtgtagt tgccgagcac cccgagcgag accacgccgc cgacgatcac cgccgtgagc
     1261 agcgtgccgg aaaaatggtg ctcgaaggtg ccgctcaatt cctcgatcgc gaacaccacg
     1321 cccgccagcg gggtgttgaa cgcagccgcg atgccggccg cgccgccggc caacaggaac
     1381 agcgttccct ggcgagggtc gcggaaaccg aagcgtcggc cgatcgcatg catcagggcc
     1441 gcgccgacgt ggacggtcgg gccttcgcgt ccgatcgacg cgccaccgag caggcccgat
     1501 accgtcagca tcatcttcgc cagcgccacc ttcaacgaga ggttgcgccg gcgccagtcc
     1561 tccggcagct gcagggcggc gatgacctgc gggatgccac tgccgcgcgt ggtctccagc
     1621 ccgcgcgtgg tcgaccaggc gagcagcgcg aacgtcgccg gggtcgccac cagtgcgtac
     1681 cacggcgatt gcgcgatcaa ccagcggaat ccagcctgcg cgacgtcgct ggccctggcg
     1741 aaggcgatcg ccgccagcgc caccgcgacg ccaccgcccc agagcgcgac gcggcgcttc
     1801 cagtccgcac ccgaaagcag gcggtcgaaa agggagggcg tgtcccgcgt cggcatgcgg
     1861 ccattgttgc atgcgacggc cgcgtgcctc gggcagaatg cgccgatgca tgcacacgac
     1921 gccctcgcct ggatgccggc cggctggcag cgcagcgcca tcgcgggggc gaccgcgtcc
     1981 gactgggtcg tgcccggcat ccccaacctg cattcgcacg ccttccagcg cgcgatggcc
     2041 ggcctcgccg aacgccagac caaccccgcg gattcgttct ggacctggcg cgagaccatg
     2101 taccgcttcg ccgcgcgctt cgatcccgat gcgctgcacg ccgtcgccag ccagctctac
     2161 gtcgagatgc tggaggccgg ctacaccacg gtgtgcgagt tccactacct gcaccacgcg
     2221 ccggacggcg cgccgtacgc ggacccggcg gcgatgtcgc gcgcgctcgt ccaggccgcg
     2281 cgcgacgccg gcatccgcct gaccctgctg ccggtgctgt acatgaccgg cggcttcgac
     2341 ggccgcgcgc tgggcgagcg gcagcggcgc ttcggccacg acgtcggcgc gtacctgcgc
     2401 ctgttcgacg cgctgcatcg cgaacaggat gcaacgctgc gggtcggctg cgccttccac
     2461 agcctgcggg cggtgccgcc ggaggcgatg cgcgacgtgc tcgccgccct gccggccgat
     2521 gcgccgcggc acatccacgt cgccgagcag gtgggcgagg tgcaggactg cctcgcgctg
     2581 cgcggcgcgc gcccggtcga gtggctgctc gcgaacgcac cggtcgacgc gcgctggacg
     2641 ctggtgcacg cgacccacct caccgaagcg gaaacgctcg cggtcgcgct cagcggcgcg
     2701 accgtggcgc tctgcccgac caccgaggcc aacctcggcg acggcctgtt cccgctgcgc
     2761 gcctacctcg actgcggcgg cgccttcggc atcggctcgg actcgcagat ctcggtgtcg
     2821 ccggtggagg agctgcgctg gctcgaatac ggccagcgcc tggccacgcg acatcgcaac
     2881 atcgcggtgc agccgggctc ggacagcgtc ggcgagacgc tgctgcgcgg cacgctcggc
     2941 agcggcgcga acgcgaccgg cttcgccgcg ggcgcgggcg cgcccgtcgc cgactggctg
     3001 gcgctcgacg ccgatgcccc gcagttcgcc ggcgtgcacc ccgccgacgc ggtcgaccgc
     3061 tggatcttca gcggcaaccg caacctcgtg cgcgacgtgt tcgtggacgg cgtgcgcgtc
     3121 gtggaggcgg gccgccatcg cgaccgcgag cgcgtcgccg cccgtttcgg ccaggcgatg
     3181 cgcgcgctgc tcgcctgagg cgatgcgcta cgcggccccg aacaggtcgt cctcgcgcgg
     3241 cagcacgcct tccagccgca gcaggaagcg cttggtcggc aatccgcccc cgaagccggt
     3301 gaggctgccg tcggcgccga tcacgcggtg gcagggcacg acgatcggca acggattgcg
     3361 gccattggcg gcgccgacgg cgcgcatcgc cgcgggctgg ccgatgcgcg cggcgagttc
     3421 ggcatagctg atcgtcgtgc cgtaggggat cgtcgccagc gcccgccaga cgtcgtgctg
     3481 gaacggcgtg ccgcgcggcg cgagcggcaa ctcgaaatcg cgacgcgtgc cggcgaagta
     3541 ttcgccgagc tggcgccgcg tttcctccag caccgcgtcg tcgccttcgc gccagcccgc
     3601 ctgcggcgcc accggatggc gcgggtcggg gaattcgacc aggcacaggc cggcggcgtc
     3661 ggcggcaagg agcagcacgc cgaccgggct gggcatcgag gtgtacacga cggaagcgtg
     3721 gcgcatgcgg cagcatcgcc cgaaacgggg ccgcggcgga atgccgcacg ccaaggcccg
     3781 caaacgaacg cgcgcggcga ggggcgacaa tgccgccgcc aggaggacga cgcctccgtc
     3841 ggccctcccc tgaacgaccg gagtcgccca tgcgcacagc tcccgcagtc ctcctggctt
     3901 ccttcctctg cgccggcggc gcttcggcgc aggacgccgc tgcgccgccg cagccgcctg
     3961 caccgaccga tgccgaatgc gcggtgttcg cgcgcgaact cagcttcgcc cagtcggtcg
     4021 ccgcgcacga tgcgcaggcc ttcgccgagc acgtcgcggc cggcgcggcc ttcgatgccg
     4081 gcggtcccgc gccgctgcat ggccgcgatg cgatcacccg ggcgtgggcg ccgatcgtcg
     4141 ccggcaagga cctccgcctc gagtggtatc cggcccgcac caccgtggcc ggcgcgggcg
     4201 acctcgcctg gtcgaccggc ccggcgctga tcgagcagcg cgcgcccggt gcgaagcagc
     4261 gctacctgct cggccggttc cgctcggtct ggcagcgcga ggccgacggc ggctggcggg
     4321 tgctgttcga cgacggcgcg ccgccgcggc ccgccaccga ggccgaggcc gccgcgttcc
     4381 gtgccgcccg tccggccggc tgcccgcgcg gctgaccggc cgccaacacc ggcgcgggga
     4441 ttcagtccgg cgggctcccg caggggtata aaccctccca tggcgcgcgc cgcgcgctgg
     4501 ttccggaggt gtcccatgac ccgcctgctg cttgccggcc tgctggccgg cgtcgcgttc
     4561 gccgcctcgg cccaatccgt cggcaccgcc gtgcaggcca cggtgcagga cgccacccag
     4621 gccgacgccg ccaaccggga cgtgcgcgac cacacctgcc tgcgcgagac cggttcgctg
     4681 gtcaccgctt cgcagaaccg gcgcg
//
LOCUS       DATIQC010000537         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_458269, whole genome shotgun sequence.
ACCESSION   DATIQC010000537 DATIQC010000000
VERSION     DATIQC010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458269"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VLM17_11550"
     CDS             complement(<1..341)
                     /locus_tag="VLM17_11550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019183753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HSR66222.1"
                     /translation="MTRLRMLAVLALVGFALAVWAVLDAGRKPPEPPPPATPQPPFAD
                     YVAGVGITETGRGNVAIGTPVAGIVREVDVRVGDRVSAGDLLFRIDDRDLQAQRRVAL
                     ADAAQAEAAIS"
     gene            complement(338..1051)
                     /locus_tag="VLM17_11555"
     CDS             complement(338..1051)
                     /locus_tag="VLM17_11555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015447228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HSR66223.1"
                     /translation="MSAAPDIAVRCRGLAKRYGSGEGSVEALRGIDLDVRAGEMLMLV
                     GPSGCGKTTLVSIVTGILDADAGSCSVFGEDVTRMDEAARTRFRRETVGFVFQAFNLL
                     PALPAWENVAVPLLLAGVARDEAEAGAREALGAVGLDARADAFPRQVSGGQQQRIAIA
                     RALVHRPRLVVCDEPTSNLDARTGHAMVDLLRDVARTPQRALLVVTHDPRILDDADRV
                     ARMEDGRIVSVDDLPERAA"
     gene            1320..>2328
                     /locus_tag="VLM17_11560"
     CDS             1320..>2328
                     /locus_tag="VLM17_11560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66224.1"
                     /translation="MTRSPSVVLATLLSACIAVLLAGCGASSEGDARAAGNARARMLS
                     PAMIAQGRQTFRYDTFGDEQLWTDRLRMHEVVQRVDPVTALAVGLKVDADALPPGILA
                     TADLTDPATTAALLKLDAVVGIKASVDAGGRITRLGITCALCHSTVDDSIAPGIGHRL
                     DGWPNRDLDPGAIIALSPAVPAAAKTVYNSWGPGKYDPRFNIDGLSTPLVLPPAYGLL
                     KVKNETYTAEGPVSYWNAYVAVTQMGGHGNFSDPRLGIDIVQTPDLVTPKLPALRSYQ
                     LSLRAPAPAAGSFDPLAATRGRAVFAGACMGCHVGATGTDNNGGKLHLPSETGMDAAY
                     AA"
BASE COUNT          327 a          892 c          798 g          311 t
ORIGIN      
        1 tgcgagatcg ccgcctcggc ctgcgccgcg tcggccagcg cgacgcgccg ttgcgcctgc
       61 aggtcccggt cgtcgatccg gaacaacagg tcgcccgccg agacgcgatc ccccacgcgc
      121 acgtccacct cgcgcacgat gcccgccacc ggcgtgccga tcgcgacgtt gccgcgaccg
      181 gtctcggtga tgccgacccc ggcgacgtag tcggcgaaag gaggctgtgg cgtggccggg
      241 ggcggcggct ccggcggctt gcgcccggca tccagcaccg cccataccgc gagcgcgaat
      301 ccgaccagcg ccagcaccgc cagcatgcgc aggcgggtca tgcggcgcgc tccggcaggt
      361 catcgacgga cacgatgcga ccgtcctcca tgcgcgcgac gcggtcggcg tcgtcgagga
      421 tgcgcggatc gtgggtgacg accagcaatg cgcgctgcgg cgtgcgcgcg acatcgcgca
      481 gcaggtcgac catcgcgtgg ccggtgcgcg cgtccaggtt gctggtcggc tcgtcgcaga
      541 ccaccaggcg cggccggtgc accagcgcgc gagcgatcgc gatgcgctgc tgctggccgc
      601 cgctcacctg ccgtggaaac gcgtcggcgc gcgcatccag tccgaccgcc cccagcgcct
      661 cgcgcgcgcc cgcctcggct tcgtcccgtg ccactccggc gaggagcagc ggcaccgcca
      721 cgttctccca ggccggcagc gcaggcagca agttgaaggc ctggaacacg aagccgacgg
      781 tttcgcgacg gaagcgcgtg cgcgccgcct cgtccatgcg ggtgacgtcc tcgccgaaca
      841 cgctgcagct gccggcatcg gcgtcgagga tgccggtgac gatcgacacc agcgtggtct
      901 tgccgcagcc agagggcccg accagcatca gcatttcacc ggcgcggacg tcgaggtcga
      961 tgccgcgcag cgcctcgacg ctgccttccc cgctgccgta acgcttggcg agcccgcggc
     1021 agcgcaccgc gatgtcgggt gcagcggaca tcctcacctc ctgcccgcaa gcgtgcaggc
     1081 ggacggtcga cccgcgcgtg aacacggtgc ctggcaggtc gttcgcacct ccgcccgcgg
     1141 cggccggctg cgctccggcc ccgccatcgc cacgtcacgg atcgcctcga cgcattgcgc
     1201 cgccggtcgc gcggacccgc gcccaccttt acacacccgg tcacgccggt gcgcatcgcg
     1261 cggcgtagcg tccggatccc caccgcggca gggtgccgca tcctgcaagg agacgcgcca
     1321 tgacccgttc cccgtccgtc gtgctggcca cgctgctttc cgcctgcatc gccgtgctgc
     1381 tggcggggtg cggtgcgtcg tcggaaggcg atgcccgcgc cgccggcaac gcccgcgcgc
     1441 ggatgctttc accggccatg atcgcgcagg gacgccagac cttccgctac gacacgttcg
     1501 gcgacgagca gctgtggacc gaccggttgc ggatgcatga agtcgtgcag cgcgtggacc
     1561 cggtgaccgc actcgcggtc ggactgaagg tggatgcgga cgcgctgccg ccgggcatcc
     1621 tcgcgaccgc cgacctcacc gatcccgcga cgaccgcggc gctgctgaaa ctggacgcgg
     1681 tggtcggcat caaggcgagc gtcgatgccg gtggccgcat cacccgtctc ggcatcacct
     1741 gcgcgctgtg ccattccacc gtcgacgact cgatcgcgcc cggcatcggc catcgcctcg
     1801 acggctggcc caaccgtgat ctcgatcccg gcgcgatcat cgcgctgtcg cccgccgtgc
     1861 cggccgccgc gaagaccgtc tacaacagct ggggaccggg caagtacgac ccgcgcttca
     1921 acatcgacgg gctcagcacg ccgctggtgc tgccgcccgc ctacggcctg ctgaaggtga
     1981 agaacgagac ctacaccgcc gaggggccgg tgtcgtactg gaacgcgtat gtcgcggtga
     2041 cccagatggg tgggcacggc aacttctccg atccgcggct gggcatcgac atcgtgcaga
     2101 cgccggacct cgtcacgccg aagctgcccg cgctgcgctc ctaccagctc agcctcaggg
     2161 cgccggcgcc ggccgcgggc agcttcgatc cgctcgccgc cacccgtggg cgcgcggtgt
     2221 tcgccggcgc ctgcatgggc tgccacgtcg gcgcgacggg caccgacaac aacggcggca
     2281 agctgcacct cccgtccgag accggcatgg acgcggccta cgcggcgc
//
LOCUS       DATIQC010000538         5555 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_105591, whole genome shotgun sequence.
ACCESSION   DATIQC010000538 DATIQC010000000
VERSION     DATIQC010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 5555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5555
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105591"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..891)
                     /gene="atpD"
                     /locus_tag="VLM17_11565"
     CDS             complement(<1..891)
                     /gene="atpD"
                     /locus_tag="VLM17_11565"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010117196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HSR66225.1"
                     /translation="MNAQVNPGTTGKIVQIIGAVVDVEFPRDSVPRVYDALKVQGTAT
                     PITLEVQQQLGDGVVRTIALGSTDGLKRNLVAANTGRAISVPVGAGTLGRIMDVLGTP
                     IDEAGPVQASDHWEIHRAAPSYEDQASANELLETGIKVIDLMCPFAKGGKVGLFGGAG
                     VGKTVNMMELINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMN
                     EPPGNRLRVALTGLTMAEYFRDEKDESGKGKDVLFFVDNIYRYTLAGTEVSALLGRMP
                     SAVGYQPTLAEEMGVLQERIT"
     gene            complement(962..1825)
                     /gene="atpG"
                     /locus_tag="VLM17_11570"
     CDS             complement(962..1825)
                     /gene="atpG"
                     /locus_tag="VLM17_11570"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010371995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HSR66226.1"
                     /translation="MAGGREIKTKIKSVQNTRKVTRALEMVSASKIRKAQDRMKASRP
                     YARAMRQVIGHLAQANSEYRHPYLVQREAVKRVGYIIVSSDRGLAGGLNNNLFRKLLG
                     EIRQWHEQGVEVDVVTIGQKASVFFRRIKVNMLASVTHLGDVPHLEQLVGVIKVMLDA
                     YSAGNVDKVFVVYNDFVNTMTQRATFDQLLPLPPSENHVARHDWDYLYEPDAPTVLEH
                     VLTRYVESLVYQAVMENVASEHAARMVAMKAASDNATKLIGTLNLIYNKARQAAITQE
                     ISEIVGGAAAV"
     gene            complement(1897..3447)
                     /gene="atpA"
                     /locus_tag="VLM17_11575"
     CDS             complement(1897..3447)
                     /gene="atpA"
                     /locus_tag="VLM17_11575"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014161761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HSR66227.1"
                     /translation="MATTQLNPSEISELIRTRIEKVGLAAEARNEGTVTAVSDGIVRI
                     FGLADVMQGEMIELPNATYALALNLERDSVGAVVLGDYEHLREGDVAKTTGRILEVPV
                     GPELLGRVVNALGEPIDGKGPVNAATTSPVETIAPGVIWRQSVSQPVQTGYKAIDSMI
                     PIGRGQRELIIGDRQTGKTAVAIDAIINQKNSGIRCIYVAIGQKNSTIANIVRKLEEF
                     GAMAYTTVVAASASESAAMQYIAAYSGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQI
                     SLLLRRPPGREAYPGDVFYLHSRLLERAARVSAEYVEKFTNGAVKGKTGSLTALPIIE
                     TQAGDVSAFVPTNVISITDGQIFLETDLFNAGIRPAVNAGISVSRVGGAAQTKIMKKL
                     SGGIRIALAQYRELAAFAQFASDLDDATRKQLERGQRVTELMKQKQYAPMSVAHQALS
                     IYAVDKGYMDDVPVAKIGAFEAGLHSHFENTSAAAIDKINASGDWNDELEGAFRKGIE
                     EFKATGSW"
     gene            complement(3501..4028)
                     /locus_tag="VLM17_11580"
     CDS             complement(3501..4028)
                     /locus_tag="VLM17_11580"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019304550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HSR66228.1"
                     /translation="MSQTLTLARPYARAAFAVARDENASATWSQALAFAARVSADPQV
                     AALLGDPRLADADAVDLLAPADAGDAFRRFLAMLAGNRRLALLPEIAGLFEELRAEAE
                     RVVKARVTSAEPLPAGELDVLKAALRKRFGREVEVETAVDPALIGGAVIDAGDVVIDG
                     SLKGKLERLQSALAH"
     gene            complement(4044..4517)
                     /locus_tag="VLM17_11585"
     CDS             complement(4044..4517)
                     /locus_tag="VLM17_11585"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012512170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HSR66229.1"
                     /translation="MLPNLTLVIQGFAFFAVAWLVMKFGWPPIIAAIEERQQKIAEGL
                     AAADRSQKDLAQAQDKVNEALREARTKANEIIEQAHQRANQIIDAAKNDAIAEAGRQK
                     ALAEAEIAAAANRAREDLRRQVSTLAVAGAEKLLRREIDPNAHKALLDELASELA"
     gene            complement(4577..4849)
                     /gene="atpE"
                     /locus_tag="VLM17_11590"
     CDS             complement(4577..4849)
                     /gene="atpE"
                     /locus_tag="VLM17_11590"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017461905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HSR66230.1"
                     /translation="MDHATLVAEVLKFTVIAAGLLIGLGALGTAIGFAILGGKFLEGS
                     ARQPELTPMLQTKMFIVAGLLDAVPMIGVAIALLLLFANPLLSKLV"
     gene            complement(4920..>5555)
                     /gene="atpB"
                     /locus_tag="VLM17_11595"
     CDS             complement(4920..>5555)
                     /gene="atpB"
                     /locus_tag="VLM17_11595"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018972488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HSR66231.1"
                     /translation="VDGLVRETFHGRSKLIAPLSITIFCLVFLMNFMDKLPVDYLPWA
                     WMSGHAAAGMDPEHAYLRVVPTADLNTTLGLALAVFLLIQVFGIAHKGVGGFTREIFT
                     APFHAHGTGMKILLAPANLLLRIIEEGVRPLSLSLRLFGNMYAGELIFILIALMTLGS
                     SLAHFSTYAMGAMQFVAGFGWTAFHILVITLQAFIFMMLTIVYLSMAAESQ"
BASE COUNT          806 a         1780 c         1994 g          975 t
ORIGIN      
        1 ggtgatgcgc tcctgcagca cgcccatttc ctcggccagc gtcggctggt agcccaccgc
       61 cgacggcatg cggccgagca gcgcggacac ttcggtaccg gccagggtgt agcggtagat
      121 gttgtcgacg aagaacagca cgtccttgcc cttgccgctc tcgtccttct cgtcgcggaa
      181 gtactcggcc atggtcaggc cggtgagcgc gacgcgcagg cggttgcccg gcggctcgtt
      241 catctggccg tacaccatcg cgaccttgtc gaggacgttg gagtccttca tctcgtggta
      301 gaagtcgttg ccctcgcggg tacgctcgcc cacgccggcg aacaccgaca ggcccgagtg
      361 cgccttggcg atgttgttga tcagttccat catgttgacg gtcttgccga cgccggcgcc
      421 gccgaacagg ccgaccttgc cgcccttggc gaacgggcac atcaggtcga tgaccttgat
      481 gccggtctcg agcagttcgt tcgcggaggc ctggtcctcg taggacggcg cggcacggtg
      541 gatttcccaa tggtcggacg cctgcaccgg gccggcctcg tcgatcggcg tgccgagcac
      601 gtccatgatg cggccgaggg tgccggcgcc gaccggcacc gagatcgcgc ggccggtgtt
      661 ggcggcgacc aggttgcgct tgaggccgtc ggtggaaccg agcgcgatgg tgcgcacgac
      721 gccgtcgccg agctgctgct ggacttccag cgtgatgggg gtcgcggtgc cctggacctt
      781 cagcgcgtcg tacacgcgcg gcacgctgtc gcgcgggaac tcgacgtcga cgaccgcgcc
      841 gatgatctgg acgatcttgc cggtggtgcc gggattgacc tgggcgttca tggattgttc
      901 ctgctctcga atttggatgt tgaaaccgaa ggccgtggcg cgcagcgccg ccgcggaccc
      961 gtcagaccgc cgcggcgccg ccgacgatct cggagatttc ctgggtgatc gccgcctggc
     1021 gggccttgtt gtagatcagg ttgagcgtgc cgatgagctt ggtcgcgttg tccgaggcgg
     1081 ccttcatcgc gaccatgcgc gcggcgtgct cggaggccac gttctccatc accgcctggt
     1141 acaccagcga ctcgacgtat cgggtcagca cgtgttccag cacggtgggc gcgtccggct
     1201 cgtacaggta gtcccagtcg tgccgggcga cgtggttctc cgacggcggc agcggcagca
     1261 gctggtcgaa ggtggcgcgc tgggtcatgg tgttgacgaa gtcgttgtag accacgaaca
     1321 ccttgtcgac gttgccggcg ctgtacgcgt ccagcatcac cttgatcacg ccgaccaact
     1381 gctccaggtg cggcacgtcg cccaggtggg tcaccgaggc gagcatgttg accttgatgc
     1441 ggcggaagaa caccgacgcc ttctggccga tggtgacgac gtcgacctcg acgccctgct
     1501 cgtgccactg gcggatctcg cccagcagct tgcggaacag gttgttgttg aggccgccgg
     1561 ccaggccgcg gtcggaggac acgatgatgt aaccgacccg cttcaccgcc tcgcgctgga
     1621 cgaggtaggg gtggcggtac tccgagttgg cctgggcgag gtggccgatc acctggcgca
     1681 tcgcccgcgc gtacgggcgc gaggccttca tccggtcctg cgccttgcgg atcttggagg
     1741 ccgagaccat ttcgagcgcg cgcgtcacct tgcgggtgtt ctgcacgctc ttgatcttcg
     1801 tcttgatttc gcgtccgcct gccatctttc tcttctcgct gtccgtagga gcgccgtgag
     1861 gcgcgaaggt cgcggcttac gccgctccta caaggatcac caggaaccgg tcgccttgaa
     1921 ttcctcgatg cccttcctga aggcgccctc gagctcgtcg ttccagtcgc cgctggcgtt
     1981 gatcttgtcg atcgccgcgg cggaggtgtt ctcgaagtgc gaatgcaggc ccgcctcgaa
     2041 ggcgccgatc ttcgcgaccg ggacgtcgtc catgtagccc ttgtcgaccg cgtagatcga
     2101 cagcgcctgg tgcgcgaccg acatcggcgc gtactgcttc tgcttcatca actcggtgac
     2161 gcgctggccg cgctcgagct gcttgcgggt cgcgtcgtcg aggtcggacg cgaactgggc
     2221 gaacgcggcg agctcgcggt actgggcgag cgcgatgcgg atgccgcccg acagcttctt
     2281 catgatcttg gtctgcgccg cgccacccac gcgcgacacc gagatgccgg cgttcacggc
     2341 cgggcggatg ccggcgttga acaggtcggt ctcgaggaag atctggccgt cggtgatcga
     2401 gatcacgttg gtcggcacga acgccgagac gtcgcccgcc tgggtctcga tgatcggcag
     2461 cgcggtgagc gagccggtct tgcccttgac ggcgccgttg gtgaacttct cgacgtactc
     2521 ggcggacacg cgcgcggcgc gctcgagcag gcgcgagtgc aggtagaaca cgtcgcccgg
     2581 gtaggcttcg cggcccggcg ggcggcgcag cagcagcgag atctggcggt aggccacggc
     2641 ctgcttggac aggtcgtcgt agatgatcag cgcgtcttcg ccgcggtcgc ggaagtactc
     2701 gcccatcgcg cagccggagt aggcggcgat gtactgcatc gcggccgatt ccgacgccga
     2761 ggcggcgacg acggtggtgt aggccatcgc gccgaattcc tcgagcttgc gcacgatgtt
     2821 ggcgatggtc gagttcttct ggccgatcgc gacgtagatg cagcggatgc cggaattctt
     2881 ctggttgatg atcgcgtcga tcgcgaccgc ggtcttgccg gtctggcggt cgccgatgat
     2941 cagctcgcgc tggccgcggc cgatcgggat catcgagtcg atcgccttgt agccggtctg
     3001 caccggctgc gagaccgact ggcgccagat cacgcccggc gcgatggtct cgaccggcga
     3061 ggtggtggcg gcgttgaccg ggcccttgcc gtcgatcggc tcgcccagcg cgttgaccac
     3121 gcggcccagc agctcggggc cgaccggcac ctcgaggatg cggccggtgg tcttggcgac
     3181 gtcgccctcg cgcaggtgct cgtagtcgcc caggaccacg gcgccgaccg agtcgcgctc
     3241 gaggttgagc gcgagcgcgt aggtcgcgtt cggcagctcg atcatttcgc cctgcatcac
     3301 gtcggcgagg ccgaagatgc gcacgatgcc gtccgacacc gcggtgacgg tgccctcgtt
     3361 gcgcgcctcg gcggcgaggc cgaccttctc gatgcgggtc cggatcagtt cgctgatttc
     3421 ggagggattg agctgcgtgg tagccatgcg ggtggttccc tggttgccgg cgtcgccgcc
     3481 ggcgttgcaa ttggaaagac ttagtgggcg agcgcgctct gcaggcgctc gagcttgccc
     3541 ttgagcgagc cgtcgatgac gacgtcgccg gcgtcgatca ccgcgccgcc gatcagcgcc
     3601 gggtcgaccg cggtctcgac ctcgacctcg cggccgaagc gcttgcgcag cgcggccttg
     3661 agcacgtcga gttcgcccgc cggcagcggc tcggcggagg tcacgcgcgc cttcaccacg
     3721 cgctcggcct cggcgcgcag ttcctcgaac aggccggcga tttccggcag cagcgcgagg
     3781 cggcggttgc cggcgagcat cgccaggaag cgccggaagg cgtcgccggc atcggccggc
     3841 gcgagcaggt cgacggcgtc ggcatccgcc agccgcggat cgccgagcaa cgcggcgacc
     3901 tgcgggtcgg cggacacgcg cgcggcgaac gcgagcgcct gcgaccaggt cgcggaggcg
     3961 ttctcgtcgc gcgccaccgc gaaggcggcg cgggcgtacg ggcgggcgag ggtcagcgtc
     4021 tggctcatcg ggtcagcgcg tccttaggcg agctcggagg cgagctcgtc gagcagcgcc
     4081 ttgtgcgcgt tcggatcgat ctcgcggcgc agcagcttct cggcgccggc gacggccagc
     4141 gtcgagacct ggcggcgcag gtcctcgcgc gcgcggttgg cggcagcggc gatctccgct
     4201 tcggccagcg ccttctggcg gccggcttcg gcgatggcgt cgttcttggc cgcgtcgatg
     4261 atctggttgg cgcgctggtg cgcctgctcg atgatctcgt tggccttggt gcgcgcctcg
     4321 cgcagcgcct cgttgacctt gtcctgcgcc tgcgccaggt ccttctggct gcggtcggcg
     4381 gcggccaggc cttcggcgat cttctgctgg cgttcctcga tcgccgcgat gatcggcggc
     4441 cagccgaact tcatcaccag ccacgcgacc gcgaagaacg cgaagccctg aatgacgagg
     4501 gtgaggttgg gtagcatggc attgctcctg gtgccggcga cgcgcgccgc cggcgtgtgc
     4561 cgttccgcgg tgtgctttag accagcttgg acagcagcgg gttggcgaac agcagcagca
     4621 gcgcgatcgc gacgccgatc atcggcacgg cgtcgagcag gccggcgacg atgaacatct
     4681 tggtctgcag catcggggtc agttccggct ggcgggccga accctcgagg aacttgccac
     4741 cgaggatggc gaagccgatg gcggtgccga gggcgccgag gccgatcagc aggccggcgg
     4801 cgatgacggt gaacttcaga acttcggcga cgagggttgc gtgatccatg gtgttgctcc
     4861 ggttgaatcg aatggctgga acgtgaggga actgcggaag gtgaagcgga tgcggtgcgt
     4921 cattggcttt cggccgccat gctcaggtag acgatggtga gcatcatgaa gatgaaggcc
     4981 tgcagcgtga tgaccaggat gtggaacgcc gtccagccga agccggcgac gaactgcatc
     5041 gcgcccatgg cataggtgct gaagtgcgcc agggacgaac ccagcgtcat cagcgcgatc
     5101 aggatgaaga tcagctcgcc cgcgtacatg ttgccgaaca gtcgcagcga caggctgagc
     5161 gggcgcacgc cttcctcgat gatgcgcagc agcaggttgg ccggcgcgag caggatcttc
     5221 atgccggtgc cgtgcgcgtg gaacggcgcg gtgaagattt cgcgggtgaa gccgccgacg
     5281 cccttgtggg cgatgccgaa cacctggatc agcaggaaca ccgcgagcgc gaggcccagc
     5341 gtggtgttga ggtcggcggt cggcaccacg cgcaggtagg cgtgctccgg atccatgccg
     5401 gcggcggcgt ggccgctcat ccacgcccac ggcaggtagt ccaccggcaa cttgtccatg
     5461 aagttcatca ggaacacgag gcagaagatg gtgatcgaca gcggcgcgat cagcttgctg
     5521 cggccatgga aggtctcgcg caccaggccg tcgac
//
LOCUS       DATIQC010000539         4162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_458550, whole genome shotgun sequence.
ACCESSION   DATIQC010000539 DATIQC010000000
VERSION     DATIQC010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4162
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458550"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1062
                     /locus_tag="VLM17_11600"
     CDS             <1..1062
                     /locus_tag="VLM17_11600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HSR66232.1"
                     /translation="PPRWQADRRDLRVYAFAPDNAALLDALHAWQAVAAARAQPYRRM
                     RVWDAAGGGELAFDADAFGRRELGWIVEHALLVDRLWSRLAAAGVRVLCPARVEGLAQ
                     DERGARVQLDDGTRLEARVAIAADGAQSSLRALAGIDAPCHDYGQRGIVAYVSTARPH
                     EDTAWQRFLPGGPLAFLPCGDGLSSIVWSVPDAEATRLLALDDAGFGAELTRAFDARL
                     GEAAPASVRAAFPLRRQLAQAQLAGRVLLVGDAAHVVHPLAGQGVNLGLRDVAALRDG
                     IAEALRLRADWSAPPRLARWARTRRSENAMAAYTFEGLLRLFANDAPAATLLRGPLLG
                     LAGRVPPLAHLLWRRASGG"
     gene            complement(1141..1746)
                     /locus_tag="VLM17_11605"
     CDS             complement(1141..1746)
                     /locus_tag="VLM17_11605"
                     /inference="COORDINATES: protein motif:HMM:NF024600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66233.1"
                     /translation="MRTTTLTFAIAAAIGLAGPAFAQSTPYTPQTTPPATPPTTSGQT
                     GTDTSQQAMPMQDTTGQATTGQDTSTQAATQSSATMSTQGQTPPASGQQDTQAADMAA
                     GNAAATGNAATTGTTADTTATTGTTADASGSATAASVTSSPGNSIVGDYHIDFDAMDG
                     NHDGNLSRKEAGSNATLMREFRAVDHNRNGKLSKDELKGWM"
     gene            complement(1852..2055)
                     /locus_tag="VLM17_11610"
     CDS             complement(1852..2055)
                     /locus_tag="VLM17_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66234.1"
                     /translation="MTPLDKPLRRELEIEGRAWTLTLDPARLKLVEKGRRKGIELAWR
                     DLVNGDAALASALQASLARLRGD"
     gene            2138..2317
                     /locus_tag="VLM17_11615"
     CDS             2138..2317
                     /locus_tag="VLM17_11615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66235.1"
                     /translation="MASKRERIAPKGDARFVRRDEHGRFKEVDDAGRSLAQDQRQHAK
                     HTAGSGQGDRGDRKR"
     gene            2330..2875
                     /locus_tag="VLM17_11620"
     CDS             2330..2875
                     /locus_tag="VLM17_11620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66236.1"
                     /translation="MTRLGAPRQAFAAPLPEFAATGALLLPLDAAAMQPPSASRVRLG
                     GHWLRRKDEFHVTVLSRALGPQLRALLDEPALQMTLASLDWRVERLHQYDLLNKLKPS
                     AHGAIACYSVIEHVRIPGMAGLYDAIADRIPDFPPCPPPHVTHYVLGDANGIGVPDAA
                     SLQAFRVRGVPEDELVQGLSR"
     gene            3031..>4162
                     /locus_tag="VLM17_11625"
     CDS             3031..>4162
                     /locus_tag="VLM17_11625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014090390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HSR66237.1"
                     /translation="MDSHPVLAGFHPAVAAWFAGTFSGPTEAQEQAWPLIRSGRNTLV
                     AAPTGSGKTLTAFLSAIDALVREGLEAGGLPDATQVVYVSPLKALSNDIHLNLEAPLE
                     GIRAELARLGLPDVAIRTAVRTGDTPQAERAALRRTPPHILVTTPESLYVLLGSESGR
                     AMLASTRTVIVDEIHAMVSSKRGSHLALSLERLEALCGRRLARVGLSATQKPIDEVAR
                     FLVGASAVAADGTADCALVDIGYARQRDLALELTPVPLQTVMSNEHWDLTYARIAELV
                     EQHRTTLVFVNTRRMAERAARHLAEKLGKEHVAAHHGSLAKELRLEAEQKLKHGQLKV
                     LVATASLELGIDIGDVDLVCQLGSPRSIAAFLQRAGRASHQVG"
BASE COUNT          517 a         1501 c         1522 g          622 t
ORIGIN      
        1 ccgccgcggt ggcaggcgga ccggcgcgac ctgcgggtgt acgccttcgc cccggacaat
       61 gccgcgctgc tcgatgcgct gcacgcatgg caggcggtcg ccgccgcgcg tgcgcagccc
      121 taccggcgca tgcgcgtctg ggacgcggcc ggcggtggcg agcttgcgtt cgatgcggat
      181 gcgttcggcc gccgcgaact cggctggatc gtcgaacacg cgctgctggt cgatcgcctg
      241 tggtcccgcc tcgctgccgc cggcgtgcgc gtgctgtgtc ccgcgcgcgt cgaggggctg
      301 gcgcaggacg agcggggcgc gcgcgtgcag ctggacgacg gcacgcggct ggaggcacgg
      361 gtggcgatcg ccgccgacgg cgcgcagtcg agcctgcgcg cgctcgccgg catcgacgcg
      421 ccgtgccacg actacggcca gcgcggcatc gtcgcctacg tgtcgaccgc gcgaccgcac
      481 gaggacaccg cgtggcagcg cttcctgccg ggcggcccgc tcgccttcct gccgtgcggc
      541 gacggcctga gttcgatcgt gtggagcgtg cccgacgcgg aggcgacgcg cctgctggcc
      601 ttggacgacg ccgggttcgg cgccgagctc acgcgcgcgt tcgacgcgcg cctgggcgag
      661 gccgcgcccg cctccgtgcg cgcggccttt ccattgcgcc gccagctcgc gcaggcgcag
      721 ctcgccggcc gcgtgctgct ggtcggcgac gccgcccacg tggtgcaccc gctcgccggg
      781 cagggggtca acctcggcct gcgcgacgtc gccgcgttgc gcgacggcat cgcggaggca
      841 ttgcgcctgc gcgccgactg gagcgcgccg ccacggctcg cgcgctgggc gcgcacccgc
      901 cgcagcgaga acgcgatggc cgcgtacacc ttcgaaggcc tgctgcggct gttcgccaac
      961 gacgcgccgg cggcgacgct cctgcgtggc ccgctgctgg gcctggccgg gcgggtgccg
     1021 ccgctcgcgc acctgctctg gcggcgcgcg tcgggcggat agccccgcgg ttctccagcc
     1081 gcatgcgaaa acgccccgcg aggcgcgggg cgttcgttcc gcgagtgcgg gaccggcgga
     1141 ttacatccag cccttcagtt cgtccttgct cagcttgccg ttgcggttgt ggtcgaccgc
     1201 gcggaattcg cgcatcagcg tggcgttgga gccggcttcc ttgcggctga ggttgccgtc
     1261 gtggttgccg tccatcgcat cgaagtcgat gtggtagtcg cccacgatcg aattgcccgg
     1321 cgaggaggtc accgacgcgg cggtcgcgct gccgctcgcg tccgcggtcg tgccggtcgt
     1381 cgcggtcgtg tcagcggtcg ttccggtcgt cgcggcattg ccggtggccg cggcattgcc
     1441 ggccgccatg tcggccgcct gcgtgtcctg ctggccgctg gcgggcggcg tctggccctg
     1501 ggtcgacatc gtcgcgctcg actgcgtggc ggcctgggtg ctggtgtcct ggccggtggt
     1561 ggcctggccg gtcgtgtcct gcatcggcat cgcctgttgc gacgtgtccg tgcccgtctg
     1621 gccgctggtc gtcggcggcg tggccggagg cgtggtctgc ggcgtgtagg gcgtcgattg
     1681 cgcgaacgcc gggccggcaa ggccgatggc ggccgcaatg gcgaacgtca gggtggtcgt
     1741 gcgcatatcg gaacctcggg aatgggggag atcacgggga acgtatccct gcgccgatca
     1801 agcccgcgta aagcgcgccg ccggcgtttg cccccgttca cgcaggcgcg ctcaatcccc
     1861 gcgcaaccgc gcgagcgagg cctgcagcgc gctggcgagc gcggcgtcgc cgttgaccag
     1921 gtcgcgccag gccagctcga tgcccttgcg gcggcccttt tccaccagct tcaggcgggc
     1981 ggggtcgagc gtcagcgtcc aggcgcggcc ctcgatctcg agttcgcgcc gcagcggttt
     2041 gtcgagtggc gtcatcgcgg tgggttcccg cttcgcgcgg acttcatggc ggcaggccga
     2101 gcatggtcgg caccggccct tgacgacgga gtgaaccatg gccagcaagc gtgagcggat
     2161 cgctccgaag ggcgacgcgc gcttcgtgcg gcgcgacgag cacgggcgct tcaaggaagt
     2221 cgacgacgcc ggccgttcgc tcgcgcagga ccagcgccag cacgcgaagc acacggccgg
     2281 ttcgggacag ggcgaccgcg gcgaccgcaa gcgctgagag cgcgctgcga tgacgcgcct
     2341 tggcgcaccg cggcaggcgt tcgccgcgcc gctgcccgag ttcgccgcca ccggcgcgct
     2401 gctgctgccg ctggacgcgg cggcgatgca accgccctcg gcgtcacgcg tgcgcctcgg
     2461 cggccattgg ctgcggcgca aggacgagtt ccacgtcacc gtgctgagcc gtgcgctcgg
     2521 accgcagttg cgtgcactgc tcgatgagcc ggcgttgcag atgacgctgg cgtcgttgga
     2581 ctggcgcgtt gaacggctgc accagtacga cctgctcaac aaactcaagc cgtccgcgca
     2641 tggtgcgatc gcctgttaca gcgtgatcga gcatgtccgg atcccgggca tggccgggct
     2701 gtacgacgcc atcgccgacc gcatccccga ttttccgccg tgcccgccgc cgcacgtcac
     2761 ccactacgtg ctcggcgacg cgaacgggat tggcgtgccc gacgccgcgt ccctgcaggc
     2821 gttccgcgtg cgcggcgtgc cggaggacga actggtccag gggttgtccc gatagcgaaa
     2881 caggcccggg tcgcagtccc tgcgacgacc gtatgccagc gtgcgcgcat gcacgggcag
     2941 attcgcttcg atttttcgcc gcctcgtact ccggccgagg gggcggcgca tgttcaggtg
     3001 gcaggcgcgc gtggacggga taatcccgcc atggattccc accccgttct cgccggcttc
     3061 catccggccg tcgccgcgtg gttcgcgggc acgttttccg gcccgaccga ggcacaggag
     3121 caggcctggc cgctgatccg gtccgggcgc aacacgctgg tggccgcgcc gaccggttcc
     3181 ggcaagaccc tgaccgcctt cctctccgcg atcgacgcgc tggtgcgcga aggcctcgag
     3241 gcaggcggcc tgccggacgc gacccaggtg gtctacgtct cgccgctgaa ggcgctgtcg
     3301 aacgacatcc acctcaacct cgaggcgccg ctggaaggca tccgcgccga gctcgcgcgc
     3361 ctgggcctgc ccgacgtggc catccgcacc gccgtgcgca ccggtgacac gccgcaggcc
     3421 gagcgcgcgg cgctgcgcag gacgccgccg cacatcctcg tgaccacgcc cgaatcgctg
     3481 tacgtgctgc tcggctcgga atccggccgc gcgatgctgg cgagcacgcg caccgtcatc
     3541 gtcgacgaga tccacgcgat ggtctcgagc aagcgcggca gccaccttgc gctgtcgctc
     3601 gagcggttgg aagcgctgtg cgggcgccgg ctggcgcgcg tgggcctgtc ggccacgcag
     3661 aagcccatcg acgaggtcgc gcgcttcctc gtcggcgcca gcgcggtcgc ggcggatgga
     3721 acggccgatt gcgcactcgt cgacatcggt tacgcccgcc agcgcgacct cgccctcgaa
     3781 ctcacgccgg tcccgctgca gacggtgatg tccaacgagc actgggacct cacctacgcg
     3841 cgcatcgccg aactggtcga acagcaccgc accacgctgg tgttcgtcaa cacgcgccgc
     3901 atggccgagc gcgccgcgcg acacctcgcc gagaagctcg gcaaggagca cgtcgccgcg
     3961 caccacggca gcctcgcgaa ggaacttcgc ctggaggcgg agcagaaact caagcacggc
     4021 cagctgaagg tgctggtggc gacggcatcg ctggaactcg gcatcgacat cggcgacgtc
     4081 gacctcgtgt gccagctggg ctcgccgcgc tcgatcgcgg cattcctgca gcgcgcgggc
     4141 cgcgcgagcc accaggtcgg cg
//
LOCUS       DATIQC010000540         4797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_635359, whole genome shotgun sequence.
ACCESSION   DATIQC010000540 DATIQC010000000
VERSION     DATIQC010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 4797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4797
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_635359"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..503
                     /locus_tag="VLM17_11630"
     CDS             <1..503
                     /locus_tag="VLM17_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017171998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HSR66238.1"
                     /translation="AVRARIAADLAQAAGGEVTVRFGVPAAVEQDSRSIDDLDIAIDD
                     YGPPNASHLRAGADIVEEAPGSSLLKSNCPVTGQPDWASVRIAYRGPRIDRAGLLRYL
                     VSFRDHCEFHEQCVERIFVDVMARCRPQALSVEARYTRRGGLDINPWRATPGSPVPVP
                     ARDLRQ"
     gene            583..939
                     /locus_tag="VLM17_11635"
     CDS             583..939
                     /locus_tag="VLM17_11635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006473550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HSR66239.1"
                     /translation="MSPQNPNDPGNLSLQPSKAAAGKPDFSNVQGQSDTVPGSGPTGS
                     NTADFSDVQGHADTVPASGGTSYTVKPGDTLSHIAQHVYGKASHWHAIFEANRDQIKD
                     PDLIRPGQVLQLPPVD"
     gene            955..1467
                     /locus_tag="VLM17_11640"
     CDS             955..1467
                     /locus_tag="VLM17_11640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66240.1"
                     /translation="MTRTHSSLVAAALIAGVIVAGCKKHEPANETTMPPAASTAPAPA
                     MPPAASTAASPMATTPPPATPLVISSVDLGSAVGADNKVTKAGTSFAKADTIHASVAT
                     DGKSASTVTARWTYQDGQVVHTEDKSVPSGPQVTDFSISKPDGWPAGDYKLEVLVDGN
                     VAQSKNFSVK"
     gene            1816..4047
                     /locus_tag="VLM17_11645"
     CDS             1816..4047
                     /locus_tag="VLM17_11645"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017157024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HSR66241.1"
                     /translation="MSQTPRILYTLTDEAPFLATASLLPIVEAFAGTAGIAVETRDIS
                     LAGRILAQFPDALAPARRVADDLAELGELATTPDANIIKLPNISASVPQLKAAIRELQ
                     AQGYPLPDYPDEPKTDTERDAKARYDRVKGSAVNPVLREGNSDRRAPASVKQYARKHP
                     HRMGKWAADSRTHVAHMDDGDFYASERSATVPQATGARIEFAGRDGGTQVLKSKIALQ
                     AGEVIDAAVLHTAALARFIDAQIEDAAAQGVLFSLHLKATMMKVSDPIMFGVVVRRFY
                     RDVLEKHAVALEQAGFDANNGIGDLYARLPSLPADLRAAIEADIAAEYARRPGLAMVN
                     SDKGITNLHVPSDIIVDASMPAMIRDSGRMWNAKGELQDTKAVIPDRCYAGIYQAVIE
                     DCKAHGAFDPATMGSVPNVGLMAQKAEEYGSHDKTFQLPAAGVVRVVDDAGTVLLEQA
                     VEAGDIFRMCQTKDAPIRDWVKLAVSRARLSGTPAVFWLDPQRAHDAQIIAKVKEYLK
                     DHDTSGLDIRILSPVEAMRFSLERIRRGEDTISVTGNVLRDYLTDLFPIMELGTSAKM
                     LSVVPLMAGGGLFETGAGGSAPKHVQQFLAEDYLRWDSLGEFLALAASLEHLAERHGQ
                     PRARVLADALDAANARILDENRAPARKVGELDNRGTHFYLARYWAQALAAQDADAELK
                     ARFAPLAKALADNEQAILAELVAVQGKAVDIGGYYHPDMAKTAAAMRPSKTFNAALAT
                     LSR"
     gene            complement(4104..4613)
                     /locus_tag="VLM17_11650"
     CDS             complement(4104..4613)
                     /locus_tag="VLM17_11650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66242.1"
                     /translation="MTPRREPGQVEAHERLRLPRWVRWWVYGGGSLCAASGAAWLLLH
                     DFGQREGEFGLESSPFEHPSLVLHGLCGLVLLWVLGLVWFPHVRRGWHKRRHRLVGGL
                     MAGLMLWLAASAAGLYYLGDETLRGWVSVGHWALGLFAVAWLPLHIWHGRRAIRRAHA
                     SQRQHRETQ"
     gene            complement(4610..>4797)
                     /locus_tag="VLM17_11655"
     CDS             complement(4610..>4797)
                     /locus_tag="VLM17_11655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009238040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66243.1"
                     /translation="LGAGSLGLGASATVCAPRALWADALTKVVLADADAAAPLLRRLH
                     AQAVVLDAGGGLRRLAA"
BASE COUNT          778 a         1832 c         1613 g          574 t
ORIGIN      
        1 aggccgtgcg tgcgcgcatc gcggccgatc tcgcgcaggc ggccggcggc gaggtgacgg
       61 tgcgcttcgg ggttccggcc gccgtggaac aggacagcag gtcgatcgac gacctcgaca
      121 tcgcgatcga cgactacggc ccgcccaacg cgtcgcacct gcgcgccggc gcggacatcg
      181 tcgaagaagc gcccggctcg tcgctgctga agtcgaactg ccccgtcacc ggccagcccg
      241 actgggcgag cgtgcgcatc gcctatcgcg gcccgcgcat cgaccgcgcc ggcctgctgc
      301 gctacctcgt gtccttccgc gaccactgcg aattccacga gcagtgcgtc gagcgcatct
      361 tcgtcgacgt gatggcgcgc tgccggccgc aggcgctgtc ggtggaggcg cgctacacgc
      421 ggcgcggcgg cctggacatc aacccgtggc gcgccacgcc cggcagcccg gtcccggtgc
      481 cggcgcgcga cctgcgccag taggggagga agcggccgcg atgccgcctt aacgcgcggc
      541 atgggagcct gcccgggcca tgacccggcc caggaggcca gcatgtcccc ccagaatccg
      601 aacgaccccg gcaacctgtc gctgcagccg agcaaggcgg cggccggcaa gcccgacttt
      661 tccaacgtgc agggccagag cgacaccgtg cccggaagcg ggcccaccgg cagcaacacc
      721 gccgacttct cggacgtgca gggccacgcc gacaccgtgc cggcgagcgg cggaaccagc
      781 tacacggtca agccgggcga cacgctctcg cacatcgccc agcacgtgta cgggaaggcc
      841 agccactggc acgcgatctt cgaagccaac cgcgaccaga tcaaggatcc cgacctgatc
      901 cgccccggcc aggtcctgca actcccgccc gtcgactgag caaggagcaa cgacatgacc
      961 cgtacccatt cgtccctggt cgcagccgcg ctgatcgccg gcgtcatcgt ggccggctgc
     1021 aagaagcacg agcccgccaa cgagaccacc atgccgcccg cggcgagcac cgcgccggcg
     1081 ccggcgatgc cgcccgccgc gtcgaccgcg gccagcccga tggcgacgac ccccccgccg
     1141 gcgacgccgc tggtcatctc cagcgtcgac ctcggcagcg ccgtcggcgc cgacaacaag
     1201 gtcaccaagg ccggcaccag cttcgccaag gccgacacca tccacgcctc ggtcgccacc
     1261 gacggcaagt cggcgtccac cgtcaccgcg cgctggacct accaggacgg ccaggtcgtg
     1321 cacaccgagg acaagtcggt gccgtccggc ccgcaggtca ccgacttcag catcagcaag
     1381 ccggacggct ggccggccgg cgactacaag ctcgaggtgc tggtcgacgg caacgtcgcc
     1441 cagagcaaga acttcagcgt gaagtagcac cccggggtgg cgggcgcacc gcgcccgcca
     1501 ccggtgacgg ccgccgccgg gtcgccgtcg cttcctgcag cgccgcgctg ccgcgccggc
     1561 ggccgctgcg gcctttccgc ccatctcccc gcaccgctcg cgaccacgcg ccgggcccgc
     1621 tgcgcgtgcg cgccccgacg aacgcatccg cgcccgcaac gggaggtcgg ccgccggcgt
     1681 catgtcgcgc gccggtcgcc cgcctttgcc ccggccgcgg cgaaccgcga aaatgcccgt
     1741 ctggccggcc gcgcgccggc catgtcgtcc ctgcgcgggc cacgcccgca ttccctcgcc
     1801 gaagccgaga ccgcaatgtc ccagacgccc cgcatcctct acaccctcac cgacgaggcg
     1861 cccttcctcg ccaccgcctc gctgctgccg atcgtggagg ccttcgccgg caccgccggc
     1921 atcgcggtgg agacccgcga catctcgctc gccgggcgca tcctcgcgca gttccccgat
     1981 gcgctggccc ccgcgcggcg cgtcgccgac gacctcgccg aactcggcga actcgccacc
     2041 acgcccgacg ccaacatcat caagctgccc aacatcagcg cctcggtgcc gcagctgaag
     2101 gcggcgatca gggaattgca ggcgcagggc tacccgctgc cggattaccc cgacgagccg
     2161 aagacggaca ccgagcgcga cgccaaggcg cgctacgaca gggtcaaggg cagcgccgtc
     2221 aacccggtgc tgcgcgaagg caattccgac cgtcgcgcgc cggcctcggt caagcagtac
     2281 gcgcgcaagc acccacaccg gatgggcaag tgggcggccg attccaggac ccacgtcgcg
     2341 cacatggacg acggcgactt ctacgccagc gagcgctcgg cgaccgtgcc acaggcgacc
     2401 ggcgcgcgca tcgaattcgc cggccgcgac ggcggcaccc aggtgctgaa gtcgaagatc
     2461 gcgctgcagg cgggcgaggt gatcgacgcg gcggtgctgc ataccgccgc gctcgcccgt
     2521 ttcatcgacg cgcagatcga ggacgccgcg gcgcagggcg tgctgttctc gctgcacctg
     2581 aaggcgacga tgatgaaggt ctccgacccg atcatgttcg gcgtcgtggt gcgtcgcttc
     2641 taccgcgacg tgctggagaa gcacgccgtc gcgctggaac aggccgggtt cgacgccaac
     2701 aacggcatcg gcgacctcta cgcgcgcctg ccgtcgctgc cggccgacct gcgcgccgcg
     2761 atcgaggcgg acatcgccgc cgagtacgcc aggcgtcctg gcctggcgat ggtgaattcc
     2821 gacaagggga tcaccaacct gcacgtgccg agcgacatca tcgtggatgc gtcgatgccg
     2881 gcgatgatcc gcgacagcgg ccgcatgtgg aacgcgaagg gcgagctgca ggacaccaag
     2941 gccgtcattc ccgaccgctg ctacgccggc atctaccagg cggtgatcga ggactgcaag
     3001 gcgcacggcg cgttcgatcc ggcgaccatg ggcagcgtgc ccaacgtcgg cctgatggcg
     3061 cagaaggccg aggaatacgg ctcgcacgac aagaccttcc agctgcccgc cgcgggcgtc
     3121 gtgagggtgg tcgacgacgc cggcaccgtg ctgctcgagc aggcggtcga ggccggcgac
     3181 atcttccgca tgtgccagac caaggacgcg ccgatccgcg actgggtcaa gctcgccgtc
     3241 agccgagcgc gcctgtccgg cacgccggcg gtgttctggc tcgacccgca gcgcgcgcac
     3301 gacgcgcaga tcatcgccaa ggtgaaggag tacctgaagg accacgacac gagcggcctg
     3361 gatatccgga tcctgtcgcc ggtcgaggcg atgcgtttct cgctcgagcg catccgccgc
     3421 ggcgaggaca cgatctcggt aaccggcaac gtgctgcgcg actacctcac cgacctgttc
     3481 ccgatcatgg agctcggcac cagcgccaag atgctgtcgg tcgtgccgct gatggccggc
     3541 ggcggcctgt tcgagaccgg cgccggcggc agcgcgccca agcacgtgca gcagttcctc
     3601 gccgaggatt acctgcgctg ggattcgctc ggcgaattcc tcgccctcgc cgcctcgctc
     3661 gaacacctcg ccgagcgcca tggccagccg cgcgcccgcg tgctggccga cgcgctcgac
     3721 gcggcgaacg cgcgcatcct cgacgagaac cgcgcgcccg cgcgcaaggt cggcgagctc
     3781 gacaaccgcg gcacgcattt ctacctcgcc cggtactggg cgcaggcgct ggccgcgcag
     3841 gacgccgatg ccgaactgaa agcgcgcttc gccccactgg cgaaggcgct ggccgacaac
     3901 gagcaggcga tcctcgccga gctcgtcgcc gtgcagggca aggcggtcga catcgggggc
     3961 tactaccacc ccgacatggc gaagaccgcg gcggccatgc ggccgagcaa gaccttcaac
     4021 gcggcgctgg cgacgttgtc gcgctgatcc gtcgcggggg aatgcaggaa gggcgcccgc
     4081 gggcgccctt tttttgcctc tttctattgg gtttcgcgat gctggcgctg cgacgcatgc
     4141 gcgcggcgga tcgcgcgccg cccgtgccag atgtgcagcg gcagccatgc caccgcgaac
     4201 aggccgagcg cccagtggcc gacgctgacc cagccgcgaa gcgtttcgtc gccgaggtaa
     4261 tacagtcccg ccgcgctcgc ggcgagccac agcatcaggc ccgccatgag tccgccgacc
     4321 aggcgatggc gacgcttgtg ccagccgcgg cgcacgtgcg ggaaccacac cagccccagc
     4381 acccacagca gcacgagacc gcacaggccg tgcaggacga ggctcgggtg ctcgaagggt
     4441 gaggactcga gcccgaactc gccttcgcgc tggccgaaat catgcagcag cagccacgcc
     4501 gcgccactcg cagcgcacag cgaaccgccg ccgtagaccc accagcgcac ccagcgcggc
     4561 aggcgcaggc gctcgtgggc ttcgacctgg ccgggctcgc ggcgcggcgt catgccgcca
     4621 gcctccgcag gccgccgccg gcgtcgagca ccacggcctg cgcgtgcagc cggcgcaaca
     4681 acggcgccgc ggcgtcggca tcggcgagca cgaccttggt cagcgcgtcc gcccacagcg
     4741 cgcgcggggc gcagaccgtg gccgacgcgc caaggccgag gctgccggcg ccgagcg
//
LOCUS       DATIQC010000541         2171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_494406, whole genome shotgun sequence.
ACCESSION   DATIQC010000541 DATIQC010000000
VERSION     DATIQC010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494406"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1626)
                     /locus_tag="VLM17_11660"
     CDS             complement(<1..1626)
                     /locus_tag="VLM17_11660"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HSR66244.1"
                     /translation="MNIDAPRGRFALPRDADAQQLLAALHAASDDPDLPAPLRALLEQ
                     ACDALHAATIDAESARQRYRALFDSVPDPVMILGTDGVVLDVNQAATAAYQRPREELV
                     GMPADVLHPDLPKEQLAAVIGGLAGGGSHVNELSCRRADGTRFPAEVHSAAFEHRGRP
                     VVLAVARDLSGRAEAELRYRELMEMIDKGIIVRNSDGQITHVNAAAMRILGIADERSL
                     QDDLRDDVWVTFDEHGHEVPRADQPATYALRTSRIVESTVLGFYSRRTRQLKWLSVTC
                     VPQFEAGGSAPVGVLSLFSDVTALKRDSALFDRVQELAHIGGWEWDAARDELHLSDEA
                     VRILGHDSAPATLEQMEACLVENDRRQLKVAIERVLSAGDGGFDLELQGRHEDGHAFW
                     ARFIGELRGSEPLSQRMTGTLQDITERKQAEETLRVQARTDPLTSLLNRDAILGELDA
                     RLTDPALARVAVLYIYLDRFKVVNDVLGHAAGDELLATAARRIVDAVGTEGLIARFGG
                     DEFLVVCSIADDAQTPERVAERILAAFADSFCFG"
     gene            complement(1623..>2171)
                     /locus_tag="VLM17_11665"
     CDS             complement(1623..>2171)
                     /locus_tag="VLM17_11665"
                     /EC_number="4.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017916264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004419 - hydroxymethylglutaryl-CoA lyase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HSR66245.1"
                     /translation="DESIERFHPVMERAAADGVRVRGYVSTVLGCPYQGDVAVADVVR
                     VAQRLHALGCYEVSLGDTIGVGTPGKARAMLRAVADAVPMHALAVHFHDTYGQALANI
                     LACLEEGVAVVDAAVSGTGGCPYAKGASGNVATEDVAYMLQGLGIETGVDLDALVDTG
                     RWLAALLGREGGSKVGRARSAG"
BASE COUNT          287 a          769 c          794 g          321 t
ORIGIN      
        1 tccgaagcag aagctgtcgg cgaacgcggc gaggatgcgt tcggcgacgc gctcgggcgt
       61 ctgcgcgtcg tcggcgatgc tgcagacgac caggaactcg tcgccgccga agcgggcgat
      121 caggccctcg gtgccgaccg cgtcgacgat gcggcgggcg gcggtggcca gcagctcgtc
      181 gccggcggcg tggccgagca cgtcgttgac caccttgaag cggtcgaggt agatgtagag
      241 caccgccacc cgcgcgagcg cggggtcggt gaggcgggca tcgagctcgc ccaggatcgc
      301 gtcgcggttg agcaggctgg tgagcgggtc ggtgcgcgcc tgcacgcgca gggtctcctc
      361 ggcctgcttg cgctcggtga tgtcctgcag ggtgccggtc atgcgctgcg acagcggctc
      421 gctgccgcgc agctcgccga tgaagcgcgc ccagaacgca tgcccgtcct cgtggcggcc
      481 ctgcagttcg aggtcgaagc cgccgtcccc ggcggagagc acccgttcga tcgccacctt
      541 cagctggcgg cggtcgttct cgaccaggca cgcctccatc tgctccagcg tcgccggtgc
      601 cgaatcgtgt cccaggatgc gcaccgcctc gtcgctgagg tgcagctcgt cgcgggcggc
      661 gtcccattcc cagccgccga tgtgggcgag ttcctgcacg cggtcgaaca gggcgctgtc
      721 gcgcttgagc gcggtgacgt cggaaaacaa cgacaacacc cccaccggcg cgctgccgcc
      781 ggcctcgaac tgcgggacgc aggtgaccga aagccatttc agctggcgcg tgcgccggct
      841 gtagaacccc agcaccgtgc tttccacgat gcggctggtg cgcaacgcgt aggtggccgg
      901 ctggtcggcc ctgggcacct cgtggccgtg ctcgtcgaag gtgacccaca cgtcgtcgcg
      961 caggtcgtcc tgcagcgagc gttcgtccgc gatgccgagg atgcgcatgg cggccgcatt
     1021 gacgtgggtg atctggccgt ccgaattgcg gacgatgatc cccttgtcga tcatctccat
     1081 cagttcgcgg tagcgcagct cggcttccgc gcggccgctg aggtcgcgcg cgaccgcgag
     1141 caccaccggg cggccgcgat gctcgaacgc ggccgaatgc acttcggccg ggaagcgggt
     1201 gccgtccgcg cggcgacagc tcagttcgtt gacgtggctg ccaccgccgg cgagcccccc
     1261 gatcaccgcg gcgagttgtt ccttcggcag gtccgggtgg agcacgtccg cgggcatgcc
     1321 caccagttcc tcgcgcgggc gctggtaggc cgcggtcgcg gcctggttga cgtcgaggac
     1381 cacgccgtcc gtgccgagga tcatcaccgg atccggcacg gagtcgaaca gcgcgcggta
     1441 gcgctggcgc gcggattccg cgtcgatggt ggcggcgtgc agcgcgtcgc acgcctgttc
     1501 cagcagggca cgcagcggcg ccggcaggtc cgggtcgtcg ctggccgcgt gcagtgccgc
     1561 gagcagctgt tgcgcgtccg cgtcccgcgg cagcgcgaag cgcccgcgcg gcgcgtcgat
     1621 gttcaccccg cgctcctcgc gcggccgacc ttgctgccgc cctcgcgccc gagcagcgcg
     1681 gcgagccagc ggccggtgtc gaccagcgcg tcgaggtcga cgcccgtctc gatgcccagg
     1741 ccctgcagca tgtaggcgac gtcctcggtg gcgacgttgc cgctggcgcc tttcgcgtac
     1801 gggcagccgc cggtgccgga aaccgcggcg tcgaccaccg ccaccccttc ctccaggcag
     1861 gcgaggatgt tggcgagcgc ctggccgtag gtgtcgtgga aatgcaccgc gagcgcgtgc
     1921 atcggtaccg cgtcggcgac cgcgcgcagc atggcgcgcg ccttgccggg cgtgccgacg
     1981 ccgatggtgt cgccgagcga cacctcgtag cagcccagtg cgtgcaggcg ctgggccacg
     2041 cgcacgacat cagccacggc cacgtcgccc tggtaagggc agccgagcac cgtcgagacg
     2101 tagccgcgca cgcgcacgcc gtcggcggcg gcacgttcca tgaccgggtg gaagcgttcg
     2161 atcgactcgt c
//
LOCUS       DATIQC010000542         2583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_423804, whole genome shotgun sequence.
ACCESSION   DATIQC010000542 DATIQC010000000
VERSION     DATIQC010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423804"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            209..445
                     /locus_tag="VLM17_11670"
     CDS             209..445
                     /locus_tag="VLM17_11670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66246.1"
                     /translation="MKAMHLGVFLASSVVVLAGCASTPETASSAPNEPTLVAKQPTVH
                     DDYQYMARVEEAARIRGIALQWVNPPQKRELPEQ"
     gene            complement(471..1031)
                     /locus_tag="VLM17_11675"
     CDS             complement(471..1031)
                     /locus_tag="VLM17_11675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HSR66247.1"
                     /translation="MARRSPPRQPDDTQEDDAALFRAAIGPVRELPSAPLPPAAPKPR
                     PRPRMAERDEDEARAEFRRTGGIDQLEGGDALAWRRDEIPPRVLQRLRRGLYAAQDEL
                     DLHHADAARAEAMLRDFLRESVQAGCGCVRIVHGKGLHSETGVPVLKNLVDRLLRQRA
                     DVLAYHSAPPAQGGHGAVLVLLRQRR"
     gene            1137..1916
                     /gene="surE"
                     /locus_tag="VLM17_11680"
     CDS             1137..1916
                     /gene="surE"
                     /locus_tag="VLM17_11680"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019305385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HSR66248.1"
                     /translation="MRVLVSNDDGVDAPGIRILAGGLRGAGHEVLVVAPDRDRSGASN
                     SLTLDGPVRVVQSDATTWRVFGTPTDCVHVAITGMLEQEPDMVVSGINNSANLGDDVI
                     YSGTVAAAMEGRFLGLPSIAVSLVTADRVGRHYESAARAAAEIIARLQTDPLPADTIL
                     NVNVPDLPWEQIRGFEVGRLGHRHRAEPCIPQQDPRGRTWWWVGAAGAADDAGPGTDF
                     HAISTGHIAITPLHVDLTRYHALEQVASWVGGLATSLDARA"
     gene            1913..>2583
                     /locus_tag="VLM17_11685"
     CDS             1913..>2583
                     /locus_tag="VLM17_11685"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HSR66249.1"
                     /translation="MTARLRLQPEAIGLGMTSQRVRDRLIERLRSGTPTNAGIADERV
                     LNAIRTVPRHLFVDEALATRAYEDTALPIGHGQTISQPWVVAKMTEALFAGGAQPKKV
                     LEVGTGSGYQGAILAALGLEVYTVERIGELLRTARKRFRTLGLNVRSKHDDGRIGWPE
                     GAPFDAIVVTAAAPALVEALTAQLAPGGTLVAPVGGGTGQSLLRLRKDADGAVTQDNL
                     GAVVFV"
BASE COUNT          370 a          951 c          911 g          351 t
ORIGIN      
        1 tggcctggga ctggcgcgcc gacgcggcac taggcctgcg cttcgagctg ccgccggggg
       61 cctatgccac caccgtcctg ggcgagctgg gcgcggtcac ggaccgctca tcggaaaagc
      121 aatccgggca cggccggccc gaaaccggcg gcgtataaca cgctcgacga cccggattgc
      181 ccgggccgcc atcgcaagga gaggtgacat gaaagccatg catcttggtg tttttcttgc
      241 gtcctccgtc gtcgttctcg cgggatgcgc gagcactccc gaaaccgcgt cctccgcgcc
      301 gaacgagccg accctggtgg ccaagcaacc caccgtccac gacgactacc agtacatggc
      361 gcgggtggag gaagcggccc gcatccgtgg catcgcgctg caatgggtga atccaccgca
      421 gaagcgcgaa ctgcccgagc aatgacctgt aacggcggac gccggcggcg ctagcgacgc
      481 tgccgcagca gcacgagtac cgcgccgtgc ccgccctggg cgggcggcgc ggagtggtag
      541 gccagcacgt ccgcgcgctg gcgcagcagc cggtcgacga ggttcttcag caccggcacg
      601 cccgtttccg aatgcaggcc cttgccgtgc acgatgcgca cgcagccgca gcccgcctgc
      661 accgattccc tgaggaagtc ccgcaacatg gcctccgcgc gcgcggcgtc ggcgtggtgc
      721 aggtcgagtt cgtcctgcgc cgcgtaaagc ccgcggcgta gccgttgcag cacccgcggc
      781 gggatttcgt cgcgccgcca ggcgagcgcg tcgccgccct cgagctggtc gatgccaccg
      841 gtgcggcgga attcggcgcg cgcctcgtcc tcgtcgcgtt cggccatgcg cggacgcgga
      901 cgcggtttcg gcgcggccgg cggcaatggc gccgacggca gttcgcgcac cgggccgatc
      961 gccgcgcgga acagcgccgc gtcgtcctcc tgcgtgtcgt cgggttgccg cggtggcgag
     1021 cgcctggcca tggagccgca gcctagcgtg aatgcgatcg tcgtcgtagt gcgcgcgcgg
     1081 accgaacgcg gccatccgct atcatgggct gcctttccag gaacacgccc cgccgcatgc
     1141 gcgtactcgt gagcaacgac gacggcgtcg acgcccccgg catccggatc ctcgccggcg
     1201 ggctgcgcgg cgccggccac gaggtgctcg tcgtcgcccc cgaccgcgac cggtccggcg
     1261 ccagcaattc gctcacgctg gacggaccgg tgcgcgtcgt gcagtcggac gccacgacgt
     1321 ggcgcgtgtt cggcacgccg accgactgcg tgcacgtcgc catcaccggc atgctcgagc
     1381 aggagcccga catggtggtg tcggggatca acaacagcgc caacctcggc gacgacgtga
     1441 tctattccgg caccgtcgcc gcggcgatgg agggccgctt cctcggcctg ccgtcgatcg
     1501 cggtgtcgct ggtcaccgcc gaccgcgtcg gccgccatta cgagagcgcc gcgcgcgccg
     1561 cggccgaaat catcgcgcgc ctgcagaccg atccgctgcc cgccgacacc atcctcaacg
     1621 tcaacgtgcc cgacctgccg tgggagcaga tccgcggctt cgaggtcggc cgcctcggcc
     1681 atcgccatcg cgccgagccg tgcatcccgc aacaggaccc gcgcgggcgg acctggtggt
     1741 gggtgggcgc ggcgggcgcc gccgacgatg ccggccccgg caccgatttc cacgcgattt
     1801 ccaccggcca catcgcgatc accccgctgc atgtcgacct cacgcgctac cacgcgctgg
     1861 aacaggtggc gagctgggtc ggcgggctgg ccacctcgct ggacgcgcgc gcatgaccgc
     1921 ccgcctgcgc ctgcaacccg aggcgatcgg cctgggcatg acgtcccagc gcgtgcgcga
     1981 ccgcctgatc gagcgcctgc gttcgggcac gccgaccaac gcgggcatcg ccgacgagcg
     2041 cgtcctcaac gcgatccgca cggtgccgcg ccacctgttc gtcgacgagg cgctggccac
     2101 gcgcgcctac gaggacaccg cgctgccgat cggccacggc cagaccatct cccagccgtg
     2161 ggtggttgcg aagatgaccg aagcgctgtt cgcgggaggc gcgcagccga agaaggtgct
     2221 ggaagtcggc accggctccg gctaccaggg cgcgatcctc gccgcgctgg ggctggaggt
     2281 gtataccgtc gagcgcatcg gcgaactgct gcgcaccgcg cgcaagcgct tccgcaccct
     2341 cggtctcaac gtacgcagca agcacgacga tggccgcatc ggctggccgg agggcgcgcc
     2401 gttcgacgcc atcgtggtca ctgcggcggc gccggcgctg gtcgaggcgc tgaccgcgca
     2461 gctggcgccg ggcggcacgc tggtggcgcc ggtcggcggc ggcaccgggc aatcgctgct
     2521 gcggttgcgc aaggatgccg acggcgcggt cacccaggac aacctgggcg cggtggtgtt
     2581 cgt
//
LOCUS       DATIQC010000543         2059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_423824, whole genome shotgun sequence.
ACCESSION   DATIQC010000543 DATIQC010000000
VERSION     DATIQC010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423824"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VLM17_11690"
     CDS             <1..435
                     /locus_tag="VLM17_11690"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007804689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HSR66250.1"
                     /translation="LREAGAGARVIGADTEVVLDDIVFGKPRDAADAVAMLRRLSGRT
                     HEVVSVVVLAGATDEREVVSISQVTFGDLDHATIDAYVASGEPLGKAGAYAIQGAAQA
                     FIAHLAGSHSGVMGLPLFETARLLREAGLPGAPGPALAGAAA"
     gene            432..1922
                     /gene="rng"
                     /locus_tag="VLM17_11695"
     CDS             432..1922
                     /gene="rng"
                     /locus_tag="VLM17_11695"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HSR66251.1"
                     /translation="MTEEILVNVTPRETRVAVVENGMLQELHIERGWRRGVVGNIYKG
                     KVQRVMPGMQAAFVEIGLDRAAFLHANDVLRAAPERLAGEEAPATTAPVPVPPIGELL
                     RDGQDVVVQVVKDPIGSKGARLTTQLSIPSRYLVLLPQSKVIGVSARIEDEAERARLK
                     ALVTELAAPAGGHGYIVRTNAEGQPAEALAEDIAYLSRAWALVEQRARDNPVGTCVYE
                     DLSLPMRAVRDLMRRDVEKVKVDSRETSEKLRVFAAQYMPGLAEKIEHYGGARPIFDL
                     YGVEDEIQRALDKEVPLKSGGYLVIDQTEAMTTVDVNTGSFLGQRNLEETVYRTNLEA
                     AQAVARQLRLRNLGGIIIIDFIDMHDAEHRRQVLRTLEKAMARDHARSTVYDFSPLGL
                     VEMTRKRTVESLERQLCEPCHECGGRGMLKTAETVTYEIFREIVRAVRQFEAARLLVI
                     ASPKVVTRITDEESAAVAELEEFLGKSIRFQADAQYLQEQFDVVLL"
BASE COUNT          317 a          716 c          749 g          277 t
ORIGIN      
        1 ctgcgcgaag ccggcgccgg cgcgcgggtc atcggcgccg acacggaagt ggtgctggac
       61 gacatcgtgt tcggcaagcc gcgcgatgcg gccgatgcgg tggcgatgct gcgccggctg
      121 tccggtcgga cgcacgaggt cgtgtcggtg gtggtgctgg ccggcgcgac ggacgagcgc
      181 gaggtggttt cgatctccca ggtcacgttc ggcgacctcg accacgccac catcgacgcc
      241 tacgtcgcca gcggcgagcc gctgggcaag gccggcgcct acgcgatcca gggcgcggcg
      301 caggcgttca tcgcgcacct ggcgggcagc cattcggggg tgatgggcct gccgctgttc
      361 gagaccgcgc gcctgctgcg cgaggccggc ctgcccggcg cgccgggtcc cgcgctcgcc
      421 ggggcggccg catgaccgag gagatcctgg tcaacgtcac cccgcgcgag acgcgcgtgg
      481 cggtggtcga gaacggcatg ctgcaggagc tgcacatcga acgcggctgg cggcgcgggg
      541 tggtcggcaa catctacaag ggcaaggtgc aacgggtcat gcccggcatg caggccgcct
      601 tcgtcgagat cggcctggac cgcgccgcct tcctgcatgc caacgacgtg ctgcgcgccg
      661 cgcccgagcg cctggccggc gaggaagcgc ccgccacgac cgcgccggtg ccggtgcccc
      721 cgatcggcga actgctgcgc gacggccagg acgtggtcgt gcaggtggtc aaggacccga
      781 tcggcagcaa gggcgcgcgg ctgacgacgc agctcagcat tccctcgcgc tacctcgtgc
      841 tgctgccgca gtcgaaggtg atcggcgtgt ccgcgcgcat cgaggacgag gccgagcgcg
      901 cccggctgaa ggcgctggtc accgagctgg cggcgcccgc cggcggccac ggctacatcg
      961 tgcgcacgaa tgccgaaggc cagcccgcgg aagcgctcgc cgaggacatc gcctacctca
     1021 gccgcgcgtg ggcgctggtg gagcagcgcg cgcgcgacaa cccggtcggc acctgcgtgt
     1081 acgaggacct cagcctgccg atgcgcgcgg tgcgcgacct catgcgccgc gacgtcgaga
     1141 aggtcaaggt cgactcgcgc gaaaccagcg agaagctgcg cgtgttcgca gcgcagtaca
     1201 tgcccggcct cgccgagaag atcgagcatt acggaggcgc gcggccgatc ttcgacctgt
     1261 acggggtcga ggacgagatc cagcgcgcgc tcgacaagga agtgccgctc aagtccggcg
     1321 gctacctcgt catcgaccag accgaggcga tgaccacggt cgacgtcaac accggctcgt
     1381 tcctcggcca gcgcaacctc gaggagacgg tgtaccgcac caacctcgag gccgcgcagg
     1441 cggtggcgcg ccagctgcgc ctgaggaacc tcggcggcat catcatcatc gacttcatcg
     1501 acatgcacga cgccgagcac cgccggcagg tgctgcgcac gctcgagaag gcgatggcgc
     1561 gcgaccacgc gcgcagcacg gtctacgact tctcgccgct cggcctggtc gagatgacgc
     1621 gcaagcgcac ggtcgagtcg ctggaacgcc agctgtgcga gccctgccac gagtgcggcg
     1681 gacgcggcat gctcaagacc gccgagaccg tgacctacga gatcttccgc gagatcgtgc
     1741 gcgcggtgcg ccagttcgag gcggcgcgac tgctggtgat cgcctcgccg aaggtcgtga
     1801 cccgcatcac cgacgaggaa tcggcggcgg tcgcggagct ggaggaattc ctcggcaagt
     1861 cgatccgctt ccaggccgac gcgcagtacc tgcaggagca gttcgatgtc gtgctgctct
     1921 gaccgcgccg tggagcgccg ggcgcgcgga tgaagctgca tccgcacatc cacctcgccc
     1981 atcgcaccgt gcgtcacctc gtcgccggcg cgctcgtgct cgccgcgctg gcgggcgtgg
     2041 tgttgtggca gctgctgcc
//
LOCUS       DATIQC010000544         2302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_600454, whole genome shotgun sequence.
ACCESSION   DATIQC010000544 DATIQC010000000
VERSION     DATIQC010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600454"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VLM17_11700"
     CDS             complement(<1..297)
                     /locus_tag="VLM17_11700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016849880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein"
                     /protein_id="HSR66252.1"
                     /translation="MRLNKHISDTGACSRREADRLIAEGRVTVNGLRARVGAEVGEGD
                     EVLVDGQALRVRTAARGQRRHVYIALNKPVGVTCTTESSVKDNVVDFVGHEQRIF"
     gene            complement(341..628)
                     /locus_tag="VLM17_11705"
     CDS             complement(341..628)
                     /locus_tag="VLM17_11705"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017915076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HSR66253.1"
                     /translation="MPDAPGLSIEHQADRRRFAVDVDGHEAELDYLLEDGVLAIVHTG
                     VPAAIAGRGIAAALVQAAVDHARQAGLRVRPACTYAAAWMERHPEYAGQQA"
     gene            complement(631..1179)
                     /locus_tag="VLM17_11710"
     CDS             complement(631..1179)
                     /locus_tag="VLM17_11710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66254.1"
                     /translation="MGKAVAKKTGTVAAKKSASKAVAKKSAGKPAAKKAGEGMAPKTA
                     GRKSTQAAAPRKTARTSTSPRKPAAGTSPVPSRSSQRRRGGDSSTRRQAGAPPEAREA
                     TRRLLEAKQARERETPPWQQLGQGEGGGHAPHAGFQSDEARTQAYALHNDEMDLPAVQ
                     GHVSDQNRQRQGRRDHRTASRH"
     gene            1172..1456
                     /locus_tag="VLM17_11715"
     CDS             1172..1456
                     /locus_tag="VLM17_11715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66255.1"
                     /translation="MPIAFRATGVFFAAVAADADLPAAAPAARRLAAVSPASRSAPLR
                     EALLLRAAPPVEAAALPPRAAPVRGRVADLLALVLRVAMSGSSFNAEPFR"
     gene            complement(1482..2093)
                     /locus_tag="VLM17_11720"
     CDS             complement(1482..2093)
                     /locus_tag="VLM17_11720"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008433511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HSR66256.1"
                     /translation="MSVTVLLVLATVLVSWLAFERPGLMARLVLWPPAIARSHQYDRL
                     VTHGFVHADLQHLLFNMITLYFFGRLVEAMFLPYLGHLGFLLFYLSALVVAIVPGWLR
                     HRRDPGYRSLGASGAVTAVLFAFILVQPWALIYVFVVPVPAVLYAVLFVGYSLWSGRH
                     GHDNVNHAAHLWGAGYGVLFTLLMEPRVGPAFIERLLHPSLQG"
     gene            complement(2090..>2302)
                     /locus_tag="VLM17_11725"
     CDS             complement(2090..>2302)
                     /locus_tag="VLM17_11725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003483541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HSR66257.1"
                     /translation="IDAHLAGHGPYLLGAQASAADFYLAMLMRWSRNMPKPATAWPHL
                     AALAQRMAARPSFRELYAREGLTEWP"
BASE COUNT          296 a          825 c          845 g          336 t
ORIGIN      
        1 gaagatgcgc tgctcgtggc cgacgaaatc gacgacgttg tccttcaccg acgactcggt
       61 cgtgcaggtc acgccgaccg gcttgttgag cgcgatgtag acgtggcgac gctgccccct
      121 ggccgccgtg cgcacgcgca gcgcctggcc gtcgacgagc acctcgtcgc cctcgcccac
      181 ctcggcgccg acgcgcgcgc gcaggccgtt gacggtgacg cggccttcgg cgatgaggcg
      241 gtcggcttcg cggcgcgagc aggcgccggt gtcgctgatg tgcttgttca ggcgcatggg
      301 gcgcgcattc tacgcgcccc gtgccttggg cgacgcccgc tcaggcctgc tggccggcgt
      361 attccggatg gcgctccatc cacgccgcgg cataggtgca tgccgggcgc acgcgcagcc
      421 cggcctggcg cgcatggtcg accgcggcct gcaccagcgc agcggcgatg ccgcgaccgg
      481 cgatggcggc gggcacgccg gtgtggacga tcgcgagcac gccatcctcg agcaggtagt
      541 cgagctcggc ctcgtggccg tccacgtcga ccgcgaagcg ccggcggtcg gcctggtgtt
      601 cgatggacag gccgggggcg tcgggcatgg tcaatggcgg ctggcggtac ggtggtcgcg
      661 ccggccttgc cgctgccggt tctggtcgct gacgtggccc tgcacggccg gcaggtccat
      721 ctcgtcatta tgcagcgcat aggcctgcgt cctggcctcg tcggactgga agcccgcgtg
      781 cggtgcatgg ccgccgcctt cgccctgccc cagctgctgc cagggcggcg tctcgcgttc
      841 gcgcgcctgc ttggcttcca gcaggcggcg ggtcgcctcg cgcgcttccg gcggagcacc
      901 ggcctgcctg cgggtgctgc tgtcgccgcc gcgcctgcgc tgcgaggagc gcgacggaac
      961 cggcgacgtg cccgcagccg gcttgcgcgg cgaggtggac gtgcgggcgg tcttcctggg
     1021 cgcggccgcc tgcgtggact tgcggcccgc ggttttcggc gccatgccct cgccggcctt
     1081 cttcgcggcg ggcttgccgg cggacttctt cgcgacggcc ttgctggcgg acttcttcgc
     1141 cgcgaccgtg ccggtcttct tcgcgacggc cttgcccatc gcctttcgcg cgacgggcgt
     1201 tttcttcgcc gccgtcgcgg cggacgcgga cttgccggcg gccgcgcccg cggcgcgacg
     1261 gctggccgcg gtttcgcccg catcgcgatc ggcgccgcta cgcgaagcct tgctcctgcg
     1321 cgccgcgcca cccgtggagg cggcggcctt gccgccgcgg gccgcgccgg tgcgcgggcg
     1381 ggtggcggac ttgctggcac tggtcttgcg ggtggccatg agcggctcct cgttcaacgc
     1441 ggagcccttc cgttagcacg ccgcgcatcc acgcggggtg atcacccctg cagcgaagga
     1501 tgcagcaggc gttcgatgaa ggccggcccg acccgtggtt ccatcagcag ggtgaacagc
     1561 acgccgtagc ccgcgcccca caggtgcgcg gcgtggttga cgttgtcgtg gccgtggcgc
     1621 ccggaccaca gcgaatagcc gacgaacagc accgcgtaca gcaccgccgg caccggcacc
     1681 acgaacacgt agatcagcgc ccacggctgc accaggatga acgcgaacag caccgcggtg
     1741 accgcgccgg atgcgccgag gctgcggtag ccggggtcgc gccgatgccg cagccagccg
     1801 ggcacgatcg ccaccaccag cgccgacagg tagaacagca ggaaaccgag gtggccgagg
     1861 tacggcagga acatcgcctc caccagccgg ccgaagaaat acaacgtgat catgttgaac
     1921 agcaggtgct gcaggtccgc gtgcacgaag ccgtgcgtga ccagccggtc gtactggtgc
     1981 gatcgggcga tcgccggcgg ccacagcacc agccgggcca tcaggccggg gcgttcgaag
     2041 gccagccacg acaccagcac cgtggccagc accagcagca cggtcacgct cacggccatt
     2101 cggtcagccc ctcgcgcgcg tagagctcgc ggaagctcgg ccgtgcggcc atgcgctggg
     2161 ccagtgcggc gaggtgcggc cacgcggtgg ccggcttcgg catgttgcgc gaccagcgca
     2221 tcagcatcgc caggtagaag tcggcggcac tggcctgcgc acccagcagg taggggccgt
     2281 gaccggcgag gtgcgcgtcg at
//
LOCUS       DATIQC010000545         1580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_352709, whole genome shotgun sequence.
ACCESSION   DATIQC010000545 DATIQC010000000
VERSION     DATIQC010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352709"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..739)
                     /locus_tag="VLM17_11730"
     CDS             complement(<1..739)
                     /locus_tag="VLM17_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017154683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HSR66258.1"
                     /translation="MASRPFLILETGQPAARLRRYGGFPHWIRVAAGLAADDTVVVNV
                     ERGEPLPDRAGFAGALITGSAAMVTERHAWSERSADWLRDAAHAGLPLFGICYGHQLL
                     AHALGGEVGYHPGGREMGTVELELHERAGEDPLFAGLPEAFPAHATHLQSVLRAPAGA
                     SVLARSVHDACHAFRWGDSAWGVQFHPEFSTAHMRGYVHAKREALAGEGQCARRLARG
                     VSAAPHARRVLRRFVRHAQALRPHHGEE"
     gene            894..>1580
                     /gene="glyQ"
                     /locus_tag="VLM17_11735"
     CDS             894..>1580
                     /gene="glyQ"
                     /locus_tag="VLM17_11735"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014159130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HSR66259.1"
                     /translation="MPAPTATPVTFPGQTFQGLIQTLNAYWAAQGCALVQPLDLEVGA
                     GTFHPATFLRALGPEPWNAAYVQPCRRPTDGRYGENPNRLQRYYQYQVVMKPSPDNIV
                     ELYFDSLKALGIDPLVHDLRLVEDNWDSPTLGAWGLGWEVWLNGMEVTQFTYFQQAGG
                     LECKPVLGEITYGLERLCMYLQNCDNVYDLVWTVGPQGVVTYGDVFLQNEREQSAYNF
                     EHANVTELFHR"
BASE COUNT          233 a          592 c          553 g          202 t
ORIGIN      
        1 actcctctcc gtggtgcggg cgcagcgcct gggcatggcg cacgaagcgg cgcagcaccc
       61 ggcgcgcgtg cggcgcggcg ctgacgccgc gcgccaggcg ccgggcgcac tggccctcgc
      121 cggccagcgc ctcgcgcttg gcatgcacgt agccgcgcat gtgcgcggtg ctgaattcgg
      181 gatggaactg cacgccccac gcgctgtcgc cccagcggaa cgcgtggcag gcatcatgca
      241 ccgagcgcgc gagcacgctc gcgcccgccg gcgcgcgcag cacgctctgc aggtgcgtgg
      301 cgtgggcggg gaacgcctcc ggcaggccgg cgaacagcgg atcctccccg gcgcgttcgt
      361 gcagttcgag ttcgaccgtg cccatctcac gcccgcccgg gtggtagccg acctcgccgc
      421 cgagcgcgtg cgcgagcagc tggtggccgt agcagatgcc gaacagcggc agcccggcgt
      481 gcgcggcgtc gcgcagccag tcggcgctgc gctcgctcca cgcgtggcgc tcggtcacca
      541 tcgcggccga accggtgatc agcgcgccgg cgaagcccgc gcgatccggc agcggctcgc
      601 cgcgctcgac gttgacgacc accgtgtcgt ccgcggccag gccggcggcg acgcggatcc
      661 agtgggggaa gccgccgtag cggcgcaggc gcgccgccgg ctggccggtt tcgaggatga
      721 ggaaggggcg cgaggccatc ggcgggcaca cggagaagac gcgacaggcg cacgcggaac
      781 ggaactgccg gcgccccgcc tgtcgaaagg cgcgcggcac gccgtcgcta tactagcccg
      841 cttttccgcg gccgcgcgca ccgtgcgcgc ggccttacag cgagccacgc cgcatgcccg
      901 cgccgactgc cacgcccgtc acgttcccgg gccagacgtt ccaggggctg atccagacgc
      961 tcaacgccta ctgggcggcg cagggctgcg cgctggtcca gccgctcgac ctcgaggtcg
     1021 gcgccggcac cttccatccc gcgaccttcc tgcgcgcgct cggcccggag ccctggaacg
     1081 ccgcctacgt gcagccctgc cgccgcccca ccgacggccg ctacggcgag aaccccaacc
     1141 gcctgcagcg ctactaccag taccaggtgg tgatgaagcc cagccccgac aacatcgtcg
     1201 agctgtactt cgactcgctg aaggcgctgg gcatcgatcc gctggtgcac gacctgcgtc
     1261 tggtcgagga caactgggac tcgccgacgc tcggcgcctg gggcctgggc tgggaagtct
     1321 ggctgaacgg catggaggtg acccagttca cctacttcca gcaggccggc ggcctcgagt
     1381 gcaagccggt gctcggcgag atcacctacg gcctcgagcg cctctgcatg tacctgcaga
     1441 actgcgacaa cgtctacgac ctggtgtgga cggtcggccc gcagggcgtg gtcacctacg
     1501 gcgacgtgtt cctgcagaac gaacgcgagc agagcgccta caacttcgag cacgccaacg
     1561 tcaccgaact cttccaccgc
//
LOCUS       DATIQC010000546         3026 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_458724, whole genome shotgun sequence.
ACCESSION   DATIQC010000546 DATIQC010000000
VERSION     DATIQC010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 3026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458724"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1242)
                     /gene="metG"
                     /locus_tag="VLM17_11740"
     CDS             complement(<1..1242)
                     /gene="metG"
                     /locus_tag="VLM17_11740"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HSR66260.1"
                     /translation="MPRTAVVTCALPYANGALHLGHLVGYIQGDIWTRARRMAGDTVH
                     FVCADDTHGTPIMLAAEKAGLAPEAYIAGIQAGHERDFADFGVAFDHYDSTNSAHNRA
                     LTEAIYARLDANGHIARRSVAQFYDPAKGMFLPDRYVKGICPNCGTPDQYGDNCEHCG
                     ATYAPTDLKEPRSVLSGVAPELRESEHFFFEVGRFEAFLREWLAGDVAVPGVKAKLQE
                     WLDGEGGLRAWDISRDAPYFGFGIPGHPGKYFYVWLDAPIGYLSSLQVLCERQRLDFD
                     AFLAPGSDAELHHFIGKDIVTFHGLFWPAVLHGAGMRAPTRLHVNGYLTVGGAKMSKS
                     RGTFVMARTYLDAGLPPEALRYYFAAKSSGGVDDVDLNLADFVARVNSDLVGKFANLA
                     SRCAGFIEKRFDGVLATALPEP"
     gene            complement(1359..1808)
                     /locus_tag="VLM17_11745"
     CDS             complement(1359..1808)
                     /locus_tag="VLM17_11745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HSR66261.1"
                     /translation="MRKTRFALLTALLLGALPLAAFAQNTPVGKWKTIDDVTGKPKSI
                     VEVYETTNGTLAARVLQVLQSDKGPHPLCDACKGENHNKPIEGMVIAWGLKHEGGTWD
                     DGKIMDPKNGKVYSAKMTPAEGGAKLDVRGYLGFSFLGRTQTWIREQ"
     gene            1965..>3026
                     /gene="apbC"
                     /locus_tag="VLM17_11750"
     CDS             1965..>3026
                     /gene="apbC"
                     /locus_tag="VLM17_11750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007512921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HSR66262.1"
                     /translation="MDALEPRIAALIDPNTGLPLGQGGARIRLAREQDRVALALGLGY
                     PLSEQGSGVLRTAMAALLAADGLDLASFELTHRIAAHAVQPSLAPLPRVRNVIAIGSG
                     KGGVGKSTTAVNLALALAAAGARVGVLDADVYGPSVPTMLGLSGKPDSPDGKSIVPMR
                     AHGIEAMSIGLMVEQDTPMIWRGPMATSALTQLLGQTLWGGDAGLDYLLVDLPPGTGD
                     IQLTLSQKVPVTGAVIVTTPQDIALIDARKGLKMFEKVGVPILGIVENMAIHICSNCG
                     HAEHIFGAGGGEKMAKDYGIEVLGSLPLDIRIREQADSGKPTVVADPDGPVAAIYRDI
                     ARKVAARIAKQMEDRTSVFP"
BASE COUNT          449 a         1017 c         1096 g          464 t
ORIGIN      
        1 gggttcgggc agcgcggtgg ccagcacgcc gtcgaagcgt ttctcgatga agccggcgca
       61 gcggctggcg aggttggcga acttgccgac caggtcggag ttcacccgcg ccacgaaatc
      121 ggcgaggttg aggtcgacgt cgtcgacgcc gccggaggac ttcgccgcga agtagtagcg
      181 cagcgcttcg ggcggcaggc cggcgtcgag gtaggtgcgc gccatcacga aggtgccgcg
      241 cgacttcgac atcttggcgc cgcccacggt caggtagccg ttgacgtgca gccgcgtcgg
      301 cgcgcgcatg ccggcgccgt gcagcaccgc cggccagaac aggccgtgga aggtgacgat
      361 gtccttgccg atgaaatggt gcagttcggc gtcgctgccg ggcgcgagga acgcgtcgaa
      421 gtcgagccgc tggcgctcgc acagcacctg caggctcgag aggtagccga tcggcgcatc
      481 cagccagaca tagaagtact tgcccgggtg ccccgggatc ccgaagccga agtagggcgc
      541 gtcgcgcgag atgtcccacg cgcgcaggcc gccttcgccg tcgagccatt cctgcagctt
      601 ggccttgacg cccggcacgg cgacgtcgcc cgcgagccat tcgcgcagga acgcctcgaa
      661 ccggccgacc tcgaagaaga agtgctccga ttcgcgcagt tccggcgcca cgccgctgag
      721 caccgagcgc ggttccttca ggtcggtcgg cgcgtaggtc gcgccgcaat gctcgcagtt
      781 gtcgccgtac tggtcgggcg tgccgcagtt cgggcagatg cccttgacgt agcggtcggg
      841 caggaacatg cccttggccg gatcgtagaa ctgcgcgacg ctgcgccgcg cgatgtggcc
      901 gttggcgtcg aggcgggcgt agatcgcctc ggtcagggcg cggttgtgcg cggaattggt
      961 cgaatcgtag tggtcgaagg cgacgccgaa gtcggcgaag tcgcgctcat gcccggcctg
     1021 gatgcccgcg atgtaggcct ccggcgcgag gccggccttc tccgccgcga gcatgatcgg
     1081 cgtgccgtgg gtgtcgtcgg cacagacgaa gtgcaccgtg tcgccggcca tgcgccgtgc
     1141 gcgcgtccag atgtcgccct ggatgtagcc gacgaggtgg ccgagatgca gcgcgccgtt
     1201 cgcgtagggc agggcgcagg tgacgacggc ggtgcggggc atggcggtcg cggaggaagc
     1261 gggccgcgat tatcgcatgc gcgtttcgcg aggaccgtcc ttcgcgctgc aacgaaaacg
     1321 gcccgcgggg cgggccgtct ccggtcgagc gaagcgcgtt actgctcgcg gatccaggtc
     1381 tgggtgcggc ccaggaacga gaagccgagg tagccgcgca cgtcgagctt ggcgccgcct
     1441 tcggccggcg tcatcttcgc cgagtacacc ttgccgttct tcgggtccat gatcttgccg
     1501 tcgtcccagg tgccgccttc gtgcttcagg ccccaggcga tgaccatgcc ctcgatcggc
     1561 ttgttgtggt tctcgccctt gcaggcgtcg cacagcgggt gcggcccctt gtccgactgc
     1621 agcacctgca gcaccctggc ggcgagcgtg ccgttggtgg tctcgtagac ctccacgatc
     1681 gatttcggct tgccggtgac gtcgtcgatc gtcttccact tgcccaccgg cgtgttctgc
     1741 gcgaaagcgg ccagcggcaa cgcacccagc agcagggcgg tcagcagggc gaaacgggtc
     1801 ttgcgcatgg tccctcccga gggattgcac ggcggcgagg cgccgcctcc cgtgccttat
     1861 acctgcatgc ggatgcgtac ggaaagcggg gcgcgaaccc cgttcaggcg gcggcgccgt
     1921 ccaccgcgcc gctacaatgt gctgtttttc ccagcatgcc gccgatggac gccctcgaac
     1981 cacgcatcgc cgccctgatc gacccgaaca ccggattgcc gctgggacag ggcggggcga
     2041 ggatccggct ggcccgcgag caggatcggg tggcgctggc gctcggcctc ggctatccgc
     2101 tgtcggaaca gggctcgggc gtgttgcgca cggcgatggc cgccctgctg gccgcggacg
     2161 gcctcgacct cgccagcttc gagctcaccc accgcatcgc cgcccacgcc gtgcagccga
     2221 gcctcgcgcc gttgccgcgg gtgcgcaacg tgatcgcgat cggatccggc aagggcgggg
     2281 tcgggaagtc gaccaccgcg gtcaacctcg ccctcgcgct ggctgcggcc ggggcgcggg
     2341 tgggcgtgct ggacgccgac gtctacgggc cgagcgtgcc gaccatgctc ggcctgtcgg
     2401 gcaagccgga cagcccggac ggcaagtcga tcgtgccgat gcgggcgcac gggatcgagg
     2461 ccatgtcgat cggcctgatg gtcgagcagg acacgccgat gatctggcgc gggccgatgg
     2521 cgacctcggc gctgacccag ctgctcgggc agaccctctg gggcggcgac gccggcctgg
     2581 actacctcct cgtcgacctg ccgcccggca ccggcgacat ccagctcacc ctgtcgcaga
     2641 aggtgccggt caccggcgcg gtgatcgtca ccaccccgca ggacatcgcg ctcatcgacg
     2701 cgcgcaaggg cttgaagatg ttcgagaagg tcggcgtgcc gatcctgggc atcgtcgaga
     2761 acatggcgat ccacatctgc tcgaactgcg gccatgcgga gcacatcttc ggcgccggcg
     2821 gcggcgagaa gatggcgaag gactacggca tcgaggtgct gggcagcctg ccgctcgaca
     2881 tccgcatccg cgagcaggcg gactcgggca agcccacggt cgtcgcggat ccggacggcc
     2941 ccgtcgcggc gatctaccgc gacatcgcgc ggaaagtggc ggcgcgcatc gcgaagcaga
     3001 tggaggaccg cacgagcgtg tttccc
//
LOCUS       DATIQC010000547         6324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_423949, whole genome shotgun sequence.
ACCESSION   DATIQC010000547 DATIQC010000000
VERSION     DATIQC010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 6324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6324
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423949"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VLM17_11755"
     CDS             complement(<1..265)
                     /locus_tag="VLM17_11755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019398143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2066 domain-containing protein"
                     /protein_id="HSR66263.1"
                     /translation="MRNWMRCVAVAGLWMAMGLAWAQRVEGDRPEAQGPYQAEVTVQS
                     QAEAQRRGGFARALGQVLQRITGDRGAAQRPGVAQELRDAADYV"
     gene            535..1584
                     /gene="purM"
                     /locus_tag="VLM17_11760"
     CDS             535..1584
                     /gene="purM"
                     /locus_tag="VLM17_11760"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005919153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HSR66264.1"
                     /translation="MTTPTPLTYRDAGVDIDAGNEVVERIKPLVRRSFRPEVMGGLGG
                     FGALFDLSGKYKEPVLVSGTDGVGTKLKLAQQLGRHDTIGIDLVAMCVNDVLVQGAEP
                     LFFLDYFATGKLDVDTTVAVVGGIAKGCELSGCALIGGETAEMPDMYPPGEYDLAGFC
                     VAAVEKSKLLDGGKVRAGDVLLGIDSSGPHSNGYSLVRRIYDRAGRPADLDVGGARLV
                     DALMAPTQLYVKPILELLSKHDGAEGGIHAMAHITGGGLTENIIRVIPDGLGLDIEAS
                     AIVLPPVFDWLQREGAVPREEMWRTFNCGVGFVLVLAPGDVAAVSADLQRLGLAHRPI
                     GQVVAASGADRVRIG"
     gene            1603..2268
                     /gene="purN"
                     /locus_tag="VLM17_11765"
     CDS             1603..2268
                     /gene="purN"
                     /locus_tag="VLM17_11765"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011258114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HSR66265.1"
                     /translation="MPGTPFRIAVLASGRGSNLQALLDAIARGALAAQVVGVFSDKAD
                     AAALERARAAGTHAEALDPRDFPNRLAYDAAFFERVDASRPDLIVCAGYMRLISEAAV
                     DAHRGRLVNIHPSLLPAFKGLRTHAQALAAGVPEHGASMHYVTADLDGGPVIAQARVP
                     VLPDDDAETLARRVLAREHPLLVATVALLAAGRVRLAGEAVVFDGAPLAAPLQLGANQ
                     GFA"
     gene            2279..3070
                     /locus_tag="VLM17_11770"
     CDS             2279..3070
                     /locus_tag="VLM17_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HSR66266.1"
                     /translation="MRSLTALALPAFALSAAMLPAAAQVAAPAPAVASQPPGLPETPA
                     AMRVLQPFVASYRVFHAGRELGTATLEVVPLQAPRWRVDLAMQGQGVMRLTGLNAQQS
                     TLFEIDGSAFRPLTQATVRRMFLSRHETVGTYDWATRSARWSGDVKPGRAGPVALQEG
                     DMSGLLIDLAVIRDAAPGRMLHYRFVDDGRTRDHVWRVAPQAETVDIGGISYDALRAD
                     RVEDGGDETILWVAPGVPTPIRILQREDGADSTDLRLVEYKGATS"
     gene            3067..3747
                     /locus_tag="VLM17_11775"
     CDS             3067..3747
                     /locus_tag="VLM17_11775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010344095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HSR66267.1"
                     /translation="MTVSVRAFAVAALAFASLPAFAALKPFSADYTASYMGLQGSARM
                     SLAQAGGNRWTYALDIQAPVAQLSQSTTFDENGGQWRPLSGHDTSSVLIKKNDKQATY
                     DWSSGQASWSGDVKDDRRGPVALHAGDLDAMLINLAIVRDVHDGDKALNYRMVDDGRG
                     KPMSYRVAGNDTVTVAGRQRKATRVEGTDGSRQTLLWVVDDLPVPVRILRRHDGKDEM
                     DLKLRAVR"
     gene            complement(3771..5024)
                     /gene="murA"
                     /locus_tag="VLM17_11780"
     CDS             complement(3771..5024)
                     /gene="murA"
                     /locus_tag="VLM17_11780"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012437778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HSR66268.1"
                     /translation="MQKIVVEGGVPLRGEVRISGAKNAVLPILCAGLLADGPVVIRNV
                     PQLHDVRTTLKVLSELGAGIRADGDAIEIDPRSVHSHVAPYELVKTMRASVLVLGPLL
                     AKHGAAEVSLPGGCAIGSRPVDQHIKGMQALGADVSVDHGFIKATAKRLHGARVVFDM
                     VSVGATENVLMAAVLAEGTSLLENAAMEPEIVDLADCLRAMGARIEGAGTPKITVHGV
                     ERLHGGEHTVVADRIETGTFLVAAAMTGGHVTATHARPDTLDAVLDKLRQAGAEITAE
                     GDRITLDMRRRRPRAIDLTTAPHPAFPTDMQAQFMALGCIAEGAGIINETIFENRFMH
                     VNELLRLGADIRVDGHTAVVRGVEKLSGAPVMATDLRASASLILAGLVAEGETTIDRI
                     YHLDRGYENIEAKLSGLGAKIRRIG"
     gene            complement(5028..5264)
                     /locus_tag="VLM17_11785"
     CDS             complement(5028..5264)
                     /locus_tag="VLM17_11785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HSR66269.1"
                     /translation="MTPDFIRELIEQGLPGARADVQGDDGVHFEATVVSEAFQGKLPL
                     ARHRMVYATLGERMGGEIHALALKTLTPAEAGQG"
     gene            5362..>6324
                     /locus_tag="VLM17_11790"
     CDS             5362..>6324
                     /locus_tag="VLM17_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013534750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HSR66270.1"
                     /translation="MPTEPAKIHVFDYAASGRRVFEIEARALDAVAARIDGAFGAACA
                     LMLACRGRVVCTGMGKSGHVARKIAATLASTGTPAFYVHPGEAGHGDLGMVTDADVVL
                     ALSNSGETDEVLMLLPVLKRQGNALVAMTGRPGSTLAREADVHLDVSVPAEACPLDLA
                     PTASTTAALALGDALAVALLEARGFTADDFARSHPAGALGRRLLLHITDVMHAGEQVP
                     RVRAEATLSEALVEMSRKRLGMTSVVDADGRLLGLFTDGDLRRTLDDARLDLRATPIS
                     AVMTRTPKTIGSDALAVEAAQLMEAHKINALVVVDDQRRVVGALN"
BASE COUNT          873 a         2363 c         2215 g          873 t
ORIGIN      
        1 cgacgtagtc ggcggcgtcg cgcagctcct gcgccacgcc tggccgctgc gcggcgccgc
       61 ggtcgccggt gatccgctgc agcacctggc cgagcgcgcg cgcgaaacca ccccggcgct
      121 gcgcttccgc ctggctctgc acggtgactt cggcctggta gggaccctgc gcctcggggc
      181 ggtctccctc cacgcgctgg gcccacgcca ggcccatcgc catccacagg ccggccaccg
      241 ccacgcatcg catccagttc cgcatcgtcc gtcccgcgtg agccaccgtc ggaagatggt
      301 gccatgcggg cctgcgggcc gcacgtttgg ccagcctcag gcgtgcctca ccccaaccct
      361 ctcccgcaag cgggagaggg cgcagagccg gggcaagcgg tggagcaggc ccacggcatc
      421 acgcaggacg cgatgctttt ccccttctcc cgctcgcggg agaccgaagg cggatgaggg
      481 cgctttcgcc ccgcctgcta aaatcccgcg tctccccgct tcaccggacg ccgcgtgacc
      541 acccccaccc cccttaccta ccgggatgcc ggcgtcgaca tcgacgcggg caacgaagtc
      601 gtcgaacgca tcaagccgct ggtcaggcgc agcttccgtc ccgaagtgat gggtggcctc
      661 ggcggcttcg gcgcgctgtt cgacctgtcc ggcaagtaca aggaacccgt cctggtctcc
      721 ggcaccgacg gcgtcggcac caagctcaag ctcgcccagc agctgggccg ccacgacacc
      781 atcggcatcg acctggtcgc gatgtgcgtc aacgacgtgc tggtgcaggg cgccgagccg
      841 ctgttcttcc tcgactactt cgccaccggc aagctcgacg tcgacaccac ggtcgcggtc
      901 gtcggcggca tcgcgaaggg ctgcgaactc tccggctgcg cgctgatcgg cggcgagacc
      961 gcggagatgc ccgacatgta cccgccgggc gaatacgacc tcgccggctt ctgcgtcgcc
     1021 gcggtggaga agtcgaagct gctcgacggc ggcaaggtgc gcgccggcga cgtgctgctc
     1081 ggcatcgact cgagcggccc gcattcgaac ggttactcgc tggtgcgccg catctacgac
     1141 cgcgccggcc gcccggccga cctcgacgtc ggcggcgcca ggctggtcga cgcgctgatg
     1201 gccccgaccc agctgtacgt gaagccgatc ctcgagctgc tgtcgaagca cgacggcgcg
     1261 gaagggggca tccacgcgat ggcgcacatc accggcggcg gcctgaccga gaacatcatc
     1321 cgcgtgatcc ccgacggcct cggcctcgac atcgaggcct ccgcgatcgt cctgccgccg
     1381 gtgttcgact ggctgcagcg cgagggcgcg gtgccgcgcg aggagatgtg gcgcacgttc
     1441 aactgcggcg tgggcttcgt gctggtgctg gcgccgggcg acgtcgccgc ggtgtcggcg
     1501 gacctgcagc gcctcggcct cgcgcaccgg ccgatcggcc aggtcgtcgc cgcctccggc
     1561 gccgaccgcg tccgcatcgg ctgaccgggt ccccgaacgc cggtgcccgg aaccccgttt
     1621 cgcatcgcgg tcctcgcctc cggccgcggc agcaacctgc aggcgctgct ggacgcgatc
     1681 gcgcgcggcg cactcgcggc gcaggtggtc ggtgtgttct ccgacaaggc cgacgcggcc
     1741 gcgctcgaac gcgcgcgcgc ggccggcacc cacgccgagg cgctggatcc gcgcgacttc
     1801 ccgaaccgcc tcgcctacga cgcggccttc ttcgaacgcg tggacgcgag caggcccgac
     1861 ctgatcgtct gcgccggcta catgcgcctg atcagcgagg cggccgtcga tgcccaccgc
     1921 ggccggctgg tcaacatcca cccctcgctg ctgcccgcgt tcaagggcct gcgcacgcat
     1981 gcgcaggcgc tcgcggccgg cgtgccggag cacggcgcca gcatgcacta cgtcaccgcc
     2041 gacctcgacg gcggcccggt gatcgcgcag gcgcgcgtgc cggtgctgcc ggacgacgac
     2101 gccgagaccc tcgcgcgccg cgtgctcgcc cgcgagcacc cgctgctggt ggcgaccgtg
     2161 gccctgctcg ccgccggccg cgtccggctg gcgggtgaag cggtcgtgtt cgacggcgcg
     2221 ccgctggccg cgccgcttca gctgggagcc aaccagggct tcgcatgatg gcgcgtccat
     2281 gcgcagcctg accgccctcg ccctgcccgc gttcgcgctg tccgccgcca tgctgccggc
     2341 cgcggcgcag gtggccgcgc ccgcgcccgc cgtggcgtcc cagccgcccg ggctgccgga
     2401 aacgccggcc gccatgcgcg tcctgcagcc gttcgtcgcc agctaccggg tcttccacgc
     2461 gggccgcgag ctcggcacgg ccacgctcga ggtggtcccg ctgcaggccc cgcgctggcg
     2521 ggtcgacctc gccatgcagg gccagggggt gatgcggctg accggcctca acgcgcagca
     2581 gagcacgctg ttcgagatcg acggaagcgc attccgtccg ctcacccagg cgaccgtgcg
     2641 ccgcatgttc ctctccaggc acgagaccgt cggcacctac gactgggcca cgcgcagtgc
     2701 gcgctggagc ggcgacgtca agcccggccg cgccggaccg gtcgccctgc aggagggcga
     2761 catgagcggc ctgctgatcg acctcgccgt gatccgcgac gccgcgccgg gccgcatgct
     2821 gcattaccgc ttcgtcgacg acggccgcac ccgcgaccac gtctggcggg tcgccccgca
     2881 ggccgagacc gtcgacatcg gcggcatcag ttacgacgcc ctgcgcgccg accgcgtcga
     2941 ggacggcggt gacgaaacca tcctctgggt cgcacccggc gtgccgaccc cgatccgcat
     3001 cctgcagcgc gaggacggcg ccgacagcac cgacctgcgc ctcgtcgaat acaagggagc
     3061 cacctcatga ccgtgtccgt ccgtgccttc gccgtcgccg ccctggcgtt cgccagcctg
     3121 cccgcgttcg ccgcgctcaa gccgttcagc gccgactaca ccgccagcta catgggcctg
     3181 cagggcagcg cccgcatgag cctcgcccag gccggcggca accgctggac ctatgcgctg
     3241 gacatccagg caccggtcgc gcagctgtcc cagagcacca ccttcgacga gaacgggggc
     3301 cagtggcgcc cgctgtcggg ccacgacacc tcgagcgtac tgatcaagaa gaacgacaag
     3361 caggccacct acgactggtc cagcggccag gccagctgga gcggcgacgt caaggacgac
     3421 cgccgcggcc cggtcgccct gcacgcgggc gacctcgacg cgatgctgat caacctggcg
     3481 atcgtgcgcg acgtgcacga cggcgacaag gcgctcaact accgcatggt cgacgacggc
     3541 cgcggcaagc cgatgagcta ccgcgtcgcc ggcaacgaca ccgtcaccgt ggcgggcagg
     3601 cagcgcaagg ccacgcgggt ggaaggcacc gacggcagcc ggcagacgct gctgtgggtc
     3661 gtcgacgacc tgccggtgcc ggtgcgcatc ctgcgccgcc acgacggcaa ggacgagatg
     3721 gacctgaagc tgcgcgcggt gcgctgatgc ggtgatccaa ccccgccggt tcaaccgatc
     3781 cggcggatct tcgcccccag ccccgacagc ttggcctcga tgttctcgta gccgcggtcg
     3841 aggtggtaga tgcggtcgat ggtggtctcg ccctcggcca ccaggccggc gaggatcagc
     3901 gaggccgatg cgcgcaggtc ggtcgccatc accggcgctc cgctgagctt ctccacgccg
     3961 cgcaccaccg cggtgtggcc gtcgacgcgg atgtcggcac ccaggcgcag cagttcgttg
     4021 acgtgcatga agcggttttc gaagatcgtt tcgttgatga tcccggcgcc ttcggcgatg
     4081 cagcccagcg ccatgaactg ggcctgcatg tcggtcggga acgcgggatg cggcgcggtg
     4141 gtgaggtcga tcgcgcgcgg gcgccggcgg cgcatgtcga gggtgatgcg atcgccttcg
     4201 gcggtgatct ccgcgccggc ctggcgcagc ttgtcgagca cggcgtccag cgtgtcgggg
     4261 cgggcgtgcg tcgcggtgac gtggccgccg gtcatcgccg cggcgaccag gaaggtgccg
     4321 gtctcgatgc ggtcggcgac gaccgtgtgc tcgccgccat gcaggcgctc cacgccgtgg
     4381 acggtgatct tcggggtccc cgcgccctcg atgcgcgcgc ccatcgcccg gaggcagtcg
     4441 gcgaggtcga cgatctccgg ctccatcgcc gcgttctcga gcaagctggt gccttcggcg
     4501 agcaccgcgg ccatcagcac gttttcggtc gcgccgacgc tgaccatgtc gaacacgacg
     4561 cgcgcgccgt gcaggcgctt cgcggtcgcc ttgatgaacc cgtggtcgac gctcacgtcg
     4621 gcgcccagcg cctgcatgcc cttgatgtgc tggtcgaccg gacgcgaacc gatcgcgcag
     4681 cccccgggca gcgagacttc cgccgcgccg tgcttcgcca gcagcgggcc gagcaccagc
     4741 accgaggcgc gcatggtctt gaccagctcg tagggcgcga cgtgcgaatg cacgctgcgc
     4801 ggatcgatct cgatggcgtc gccgtcggcg cggatgccgg cgccgagctc gctgagcacc
     4861 ttgagcgtcg tgcgcacgtc gtgcagctgg gggacgttgc ggatcaccac cggcccgtcg
     4921 gcgagcagcc ccgcgcacag gatcggcagc accgcgttct tggcgccgga gatgcgcacc
     4981 tcgccgcgca gcggcacgcc gccctcgacc acgatcttct gcatggctca gccctgcccg
     5041 gcttcggcgg gcgtcagcgt cttcagcgcg agcgcgtgga tctcgccgcc catgcgctcg
     5101 cccagcgtgg cgtagaccat gcggtggcgg gcgagcggca gcttgccctg gaaggcttcg
     5161 ctgacgacgg tggcctcgaa gtgcacgcca tcgtcgccct gcacgtcggc gcgcgcgccg
     5221 ggcaggccct gctcgatcag ttcgcggatg aaatcgggag tcatgggcac cgggaaaagg
     5281 gcgccggcgc cgggtcgggc cggcggcagc gcggatgcgg gtaaaatgcc gcgtccagtc
     5341 tagcggaaag ccccggccga catgccgacc gagcccgcaa aaatccacgt cttcgactat
     5401 gccgccagcg gccgccgggt gttcgagatc gaggcgcgcg cgctcgacgc ggtggccgcg
     5461 cgcatcgacg gcgcgttcgg cgccgcctgc gcgctgatgc tggcctgccg tggccgcgtg
     5521 gtctgcaccg gcatgggcaa gtccggccac gtcgcgcgca agatcgcggc gacgctggct
     5581 tcgaccggca cgccggcgtt ctacgtgcat ccgggcgaag cgggccacgg cgacctcggc
     5641 atggtcaccg atgccgacgt ggtgctggcg ctgtccaact ccggcgaaac cgacgaagtg
     5701 ctgatgctgc tgccggtgct caagcgccag ggcaacgcgc tggtcgcgat gaccggccgc
     5761 ccgggctcga cgctggcgcg cgaggccgac gtgcacctcg acgtcagcgt gccggccgaa
     5821 gcctgtccgc tggacctcgc gcccaccgcc agcaccaccg ccgcgctcgc gctcggcgac
     5881 gcactcgccg tcgcgctgct ggaagcgcgc gggttcaccg ccgacgactt cgcccgttcg
     5941 catcccgccg gcgcgctcgg ccgccgcctg ctgctgcaca tcaccgacgt gatgcatgcc
     6001 ggcgagcagg tgccgcgcgt gcgcgcggaa gcgacgctga gcgaggcgct ggtcgagatg
     6061 agccgcaagc ggctgggcat gacctcggtg gtcgacgccg acggccgcct gctcgggctc
     6121 ttcaccgacg gcgaccttcg ccgcacgctc gacgacgcgc gcctggacct gcgcgcgacg
     6181 ccgatcagcg cggtgatgac ccggacgccg aagacgatcg gctcggacgc gctggcggtc
     6241 gaagcggcgc agctgatgga agcgcacaag atcaatgcgc tggtcgtggt cgacgaccag
     6301 cggcgcgtgg tcggtgcgct caac
//
LOCUS       DATIQC010000548         2174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_35221, whole genome shotgun sequence.
ACCESSION   DATIQC010000548 DATIQC010000000
VERSION     DATIQC010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35221"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..808
                     /gene="rfbB"
                     /locus_tag="VLM17_11795"
     CDS             <1..808
                     /gene="rfbB"
                     /locus_tag="VLM17_11795"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012479083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HSR66271.1"
                     /translation="AAETHVDRSIDDPAAFVRANVTGTFELLEAARQHLRERPDPAFR
                     FLHVSTDEVYGSLGDTGQFTEATPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNC
                     SNNYGPFQFPEKLIPLVIARALAGEPLPVYGDGRNVRDWLYVGDHCAAIRTVLAQGRI
                     GETYNVGGDAERQNIEVVRTICALLDQRRPRTDGRPRESQVTFVADRPGHDRRYAIDA
                     GKLKRELGWKPAVTFEQGIAHTVDWYLDHQDWVRRVLDGSYRLERIGTAA"
     gene            842..1729
                     /gene="rfbA"
                     /locus_tag="VLM17_11800"
     CDS             842..1729
                     /gene="rfbA"
                     /locus_tag="VLM17_11800"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HSR66272.1"
                     /translation="MSNRKGIILAGGSGTRLYPITQAISKQLLPVYDKPMIYYPLSVL
                     MLAGIRDVLVINTPHEQALFRNLLGDGSRWGMRIGYAVQPSPDGLAQAYLIGEEFVAG
                     QPSCLVLGDNIFYGHGLTDLLRRATARDAGATVFGYWVRDPERYGVAEFDATGKVIGL
                     EEKPARPKSSYAVTGLYFYDGRASTFARGLKPSARGELEITDLNRCYLDEGSLQLEKL
                     GRGFAWLDTGTHESLVEAAGYVETIEKRQGLRVCCPEEIAYFNGWIDADQLRALARPL
                     AKNGYGQYLLSLLEHDHVA"
     gene            1731..>2174
                     /gene="rfbC"
                     /locus_tag="VLM17_11805"
     CDS             1731..>2174
                     /gene="rfbC"
                     /locus_tag="VLM17_11805"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012479085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HSR66273.1"
                     /translation="MKVIETDLPGCVVLEPQVFGDARGFFYESFNRDKLRAAGIDVAF
                     VQGNVSSSTRGVLRGLHYQWPKPQGKLVSVLEGEVWDVAVDIRRGSPTFGRWAAVVLS
                     ADNKRHFLIPPGFAHGFVTLSERALFTYLCTETYDRDADAGIRWND"
BASE COUNT          351 a          794 c          717 g          312 t
ORIGIN      
        1 cgcggccgag acgcacgtgg accgctccat cgacgacccc gccgcgttcg tgcgcgcgaa
       61 tgtcaccggc accttcgagc tcctggaggc ggcgcggcag cacctccgcg agaggccgga
      121 cccggcgttc cgcttcctcc acgtgtccac cgacgaggtc tacggctcgc tcggcgacac
      181 cggccagttc accgaggcca cgccgtacgc gccgaattcg ccctattcgg cgtccaaggc
      241 cgcgtccgac cacctggtgc gcgccttcca ccacacctac gggctgccgg tcctcaccac
      301 caactgctcg aacaactacg ggccgttcca gttcccggaa aagctcatcc cgctggtgat
      361 cgcgcgcgcg ctcgccggcg agccgctgcc ggtgtacggc gacggcagga acgtgcgcga
      421 ctggctctac gtcggcgacc actgcgcggc gatccgcacg gtgctggcgc aaggacgcat
      481 cggcgagacc tacaacgtcg gcggcgacgc ggagcggcag aacatcgagg tggtgcgcac
      541 gatctgcgcg ctgctcgacc agcgccgccc gcgcacggac ggcaggccgc gcgaaagcca
      601 ggtcaccttc gtcgccgacc gcccgggcca cgaccgccgc tatgcgatcg acgcgggcaa
      661 gctcaagcgc gaactcggct ggaagccggc ggtgaccttc gagcagggca tcgcccacac
      721 cgtcgactgg tacctcgacc accaggactg ggtgcgccgc gtgctcgacg gcagctaccg
      781 gctcgagcgc atcggcacgg ccgcctgagg cggtcgtcca cgcaccctcg caaggatcgc
      841 aatgagcaac cgcaagggca tcatcctcgc cggcgggtcc ggcacccggc tgtatccgat
      901 cacccaggcg atcagcaagc agctgctgcc ggtgtacgac aagccgatga tctactaccc
      961 gctcagcgtg ctgatgctgg cgggcatccg cgacgtgctg gtgatcaaca cgccgcacga
     1021 gcaggcgctg ttccgcaacc tgctcggcga cggctcgcgc tggggcatgc gcatcgggta
     1081 cgcggtgcag cccagccccg acggcctcgc gcaggcctac ctgatcggcg aggagttcgt
     1141 cgccggccag ccgagctgcc tggtgctcgg cgacaacatc ttctacggcc acgggctgac
     1201 cgacctgctg cggcgcgcga ccgcgcgcga tgccggcgcc acggtgttcg gctactgggt
     1261 gcgcgacccg gaacgctacg gcgtggccga gttcgacgcc accggcaagg tcatcggcct
     1321 ggaggagaag cccgcccgcc ccaagtccag ctacgcggtc accggccttt acttctacga
     1381 cggccgcgcc agcaccttcg cccgcgggct gaagccgtcg gcgcgcggcg aactcgagat
     1441 caccgacctc aaccgctgct acctcgacga aggctcgctg cagctggaga agctcggccg
     1501 tggcttcgcc tggctcgaca ccggcaccca cgaatcgctg gtcgaggcgg ccggctatgt
     1561 ggagacgatc gagaagcggc aggggctgcg cgtctgctgc cccgaggaga tcgcctactt
     1621 caacggctgg atcgacgccg accagctgcg cgcgctggcc cggccgctgg cgaagaacgg
     1681 gtatggccag tacctgctga gcctgctcga acacgaccac gtcgcctgac atgaaagtga
     1741 tcgaaaccga cctgccgggt tgcgtggtgc tcgagccgca ggtattcggc gacgcacgcg
     1801 gtttcttcta cgagtccttc aaccgggaca agctgcgcgc cgccgggatc gacgtcgcct
     1861 tcgtgcaggg caacgtgtcc tcgtccaccc ggggcgtgct gcgcggcctg cactaccagt
     1921 ggcccaaacc gcagggcaag ctggtcagcg tgctggaagg cgaggtctgg gacgtcgccg
     1981 tcgacatccg tcgcggctcg ccgaccttcg gccgctgggc tgccgtcgtg ctgagtgcgg
     2041 acaacaagcg gcatttcctg atcccgccgg gcttcgcgca cgggttcgtg accctcagcg
     2101 agcgcgcgct gttcacctac ctctgcaccg agacctacga ccgcgacgcg gatgccggca
     2161 ttcgctggaa cgac
//
LOCUS       DATIQC010000549         7219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_529469, whole genome shotgun sequence.
ACCESSION   DATIQC010000549 DATIQC010000000
VERSION     DATIQC010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 7219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7219
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529469"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..517
                     /locus_tag="VLM17_11810"
     CDS             <1..517
                     /locus_tag="VLM17_11810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007964280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF489 family protein"
                     /protein_id="HSR66274.1"
                     /translation="DAGVLATALDSVFQIDAGTTAEVYGGEQALRPGLMLLRDYLRSA
                     QRDDLLPRLALAVLQLERRFSRDPMAQRVHAGIVALGAMADRLGPSHPEVLAALGNLY
                     ASTVSQLRPRVLVQGNPHYLGQAQVVAEVRAVLLAALRSAVLWRQLGGSLWDFVLRRR
                     ALAAAVEAHLR"
     gene            627..3380
                     /gene="acnA"
                     /locus_tag="VLM17_11815"
     CDS             627..3380
                     /gene="acnA"
                     /locus_tag="VLM17_11815"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017159833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HSR66275.1"
                     /translation="MADSFATRARLDVNGKSYTYASLPKLGERFDLAKLPYSMKILLE
                     NLLRHEDGVTVLPAHIEAVAKWDPKAESETEIAFMPARVVLQDFTGVPCVVDLAAMRD
                     AVGKLGGDPKQINPLIPSELVIDHSVQVDVFGRPDALDLNGKIEFERNMERYSFLRWG
                     QKAFRDFKVVPPSTGIVHQVNLENLARVVMERQVDGELMAFPDTVFGTDSHTTMINGI
                     GVLGWGVGGIEAEAAMLGQPSSMLIPQVVGFKLTGKLPEGTTATDLVLTVTQMLRALG
                     VVGKFVEFFGDGLQHLPLADRATIANMAPEYGATCGIFPVDAEAINYLRLSGRSEQQI
                     ALVEAYARAQGLWHTPDSPHASYSAVLELDLGDVRPSLAGPKRPQDRVLLEKVQDNYR
                     TNLQGLTANRQAKNATARMDAEGGDQPQAEHLAAKPKSKIRIQDQDCELGDGSVVIAA
                     ITSCTNTSNPAVMLGAGLLARNAVARGLKSKPWVKPSLGPGSLVVTDYLKKAGVLADL
                     EKLGFYVVGYGCTTCIGNSGPLPEEVSRGIAENDLVVASVLSGNRNFEGRVHPEVKMN
                     YLASPPLVVAYALAGTVDIDLTTEPLGHDAAGNPVFLRDIWPSNKEIGDTIAATVGPE
                     LFAQNYADVFKGDTRWNQIASPEGESFAWDEASTYIKNPPYFDGMTMSVGRIADLHGA
                     RVLGLFGDSITTDHISPAGNIKKDSPAGRYLQARGVQPADFNSYGSRRGNDDVMVRGT
                     FANIRIKNLMFGGEEGGNTLYFRANAQPEKLAIYDAAMKYKADGVPLVVFAGKEYGTG
                     SSRDWAAKGTNLLGVKAVVAESFERIHRSNLVGMGVLPLQFHEGQNAKSLGLDGSEVV
                     DVVGLEDGAAKTATVVARRPDGFERRFEVRVLLLTPKEVEYFRNGGILHYVLRQLASR
                     KAA"
     gene            complement(3469..3915)
                     /locus_tag="VLM17_11820"
     CDS             complement(3469..3915)
                     /locus_tag="VLM17_11820"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HSR66276.1"
                     /translation="MDAMAKGLRIAALMALLLVAACARSTPETRLRATLSELQQAVDA
                     RDAAGVRGVLADDFIGPDGLDKAGAARLAQLMFLRYRSVGAHAGPLDVRVQGAAASVS
                     CDVVLTGGDAGALPEAGQLYAVTTGWRLEGGEWRLASAGWKAAGDR"
     gene            4052..5728
                     /locus_tag="VLM17_11825"
     CDS             4052..5728
                     /locus_tag="VLM17_11825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010365297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HSR66277.1"
                     /translation="MAERPWLAHYPAGMPAEIDADEYPSVAAVFHRSVEKYRDRPAFA
                     NLGKVMSYGELDRLSAQFAAWLLGELGLKRGDRVAIMMPNCLQYPIATFGVLRAGLTV
                     VNVNPMYTSHELHHQLEDSGASVIVVLDNFADTVLEAMPGTALRQVVATGLGDMLGFP
                     KGALVNFVLRHVRKMVPACTIPGAVRFRETLERGARLPPPQVDIDPQDIAFLQYTGGT
                     TGVAKGAMLTHRNLVANMQQAAAWVRNNVRDGEEIIITALPLYHIFALTANGLVFMKF
                     GGLNYMITNPRDMPAFVRELGKVPFTAITGVNTLFNGLLNTPGFDKLDFSRLRLTLGG
                     GMAVQRTVAERWKQVTGCTLVEAYGLTETSPAACINPMDLAEYNGAIGLPIPSTDACL
                     KDEEGRHLPTGEVGELCIKGPQVMKGYWQRPDETAKVVDAEGWLHTGDMARMDERGFF
                     YIVDRKKDMILVSGFNVYPNEVEDVLAGMPGVREVAAIGVPDEKSGEAVKVVIVRKDP
                     SLTAEQVKAYAREYLTGYKRPHYVEFRDELPKTNVGKILRRELRDAPPPR"
     gene            5888..6775
                     /locus_tag="VLM17_11830"
     CDS             5888..6775
                     /locus_tag="VLM17_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HSR66278.1"
                     /translation="MSAVIPLHPADVRQTLRVVEEPSRNVHWCHMHADLVGRPGRACF
                     STRLVEDILGYQQSLGARLRHEARDDDQLPHVVLASDNPGVFNLGGDLELFCRLIRSG
                     DRDGLLDYARKCVLGVHAFHAGLGVGAHTIALVQGDALGGGFEAALGCHTIVAEEGVL
                     MGLPEVLFDLFPGMGAYSFLCKRVPAKLAEKIMLEGNVIPAEELYRLGLVDVLARRGE
                     GAQAVEEVIRASRRIPHARAAMQQVRELAQPVTLDEMMRITGIWVDTALQLGDRSLRT
                     MERLVRAQYRRQDGREAMA"
     gene            complement(6797..>7219)
                     /locus_tag="VLM17_11835"
     CDS             complement(6797..>7219)
                     /locus_tag="VLM17_11835"
                     /inference="COORDINATES: protein motif:HMM:NF013767.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009927 - histidine phosphotransfer kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HSR66279.1"
                     /translation="MSAAEVPGRRGDGGSVLQELAGMQLGERFLHDFVEQCLRDMGRC
                     MSNAQQAASRRDGETLREAAHAMRGVAENLGAGPLVERCRDLMRMSNDALSREGLRLT
                     ADLGPLVELTARRARTEVRELSSRDQRDGGPMPGSDPS"
BASE COUNT         1138 a         2621 c         2422 g         1038 t
ORIGIN      
        1 cgacgccggc gtgctggcca ccgcgctcga cagcgtgttc cagatcgacg ccggcaccac
       61 cgccgaagtc tatggcgggg agcaggcgct gcgccccggg ctgatgctgc tgcgcgacta
      121 cctccgcagc gcgcagcgcg acgacctgct gccacgcctg gcgctcgcgg tgctgcagct
      181 cgaacggcgc ttcagccgcg atccgatggc gcagcgcgtg catgccggca tcgtcgcgct
      241 cggcgcgatg gccgaccgcc tcgggccgtc gcatccggaa gtgctggccg cgctcggcaa
      301 cctctacgca agcacggtca gccagctgcg cccgcgcgtg ctggtgcagg gcaacccgca
      361 ttacctcggg caggcgcagg tcgtcgccga agtgcgcgcg gtgctgctgg cggccctgcg
      421 ctcggcggtg ctgtggcgcc agctcggcgg cagcctgtgg gacttcgtgc tgcgccggcg
      481 cgcgctggcg gcggcggtcg aggcgcacct gcgctagccg cgggaccgtc gctccgggtg
      541 cggcggcagg ccctttccgg cataattgcg ggctgactgc ggtgtgttct gtcccgccct
      601 cccctccctg ccacggagcc tcacgcatgg ccgactcctt cgccacccgc gcccgcctgg
      661 acgtcaacgg caagtcctat acctacgcca gcctgccgaa actcggcgag cgcttcgacc
      721 tggcgaagct gccgtactcg atgaagatcc tgctggagaa cctgctccgg cacgaggacg
      781 gcgtgaccgt gctgccggcg cacatcgagg cggtcgccaa gtgggacccg aaggccgaat
      841 ccgagaccga gatcgccttc atgccggcgc gcgtggtcct gcaggacttc accggcgtgc
      901 cgtgcgtggt cgacctcgcg gcgatgcgcg acgcggtcgg caagctcggc ggcgatccga
      961 agcagatcaa cccgctgatc ccgtcggagc tggtgatcga ccactcggtg caggtggacg
     1021 tgttcggccg cccggatgcg ctggacctca acggcaagat cgagttcgag cgcaacatgg
     1081 agcgctacag cttcctgcgc tggggccaga aggccttccg cgacttcaag gtggtgccgc
     1141 cctcgaccgg catcgtgcac caggtcaacc tcgagaacct cgcccgcgtg gtgatggaac
     1201 gccaggtgga cggcgagctg atggcgttcc cggacaccgt gttcggcacc gactcgcaca
     1261 ccaccatgat caacggcatc ggcgtgctcg gctggggcgt cggcggcatc gaggccgagg
     1321 cggcgatgct cggccagccc tcgtcgatgc tgatcccgca ggtcgtcggc ttcaagctga
     1381 ccggcaagct gccggaaggc accaccgcca ccgacctcgt gctgaccgtg acccagatgc
     1441 tgcgtgcgct cggcgtggtc ggcaagttcg tcgagttctt cggcgacggc ctgcaacacc
     1501 tgccgctggc cgaccgcgcg accatcgcca acatggcgcc cgagtacggc gcgacctgcg
     1561 gcatcttccc ggtcgacgcg gaagccatca attacctgcg cctgtccggc cgcagcgaac
     1621 agcagatcgc gctggtcgag gcctacgcca gggcgcaggg cctgtggcac acgccggatt
     1681 cgccgcacgc cagctactcg gccgtgctcg agctcgacct cggcgacgtg cgcccctcgc
     1741 tcgccggccc caagcgcccg caggaccgcg tgctgctgga gaaggtgcag gacaattacc
     1801 gcaccaacct gcagggcctc accgccaacc gccaggccaa gaacgcgacc gcgcgcatgg
     1861 acgccgaagg cggcgaccag ccgcaggccg agcacctcgc cgccaagccg aagtcgaaga
     1921 tccgcatcca ggaccaggac tgcgagctcg gcgacggctc ggtggtgatc gccgcgatca
     1981 cctcctgcac caacacctcc aacccggcgg tgatgctcgg cgccggcctg ctcgcgcgca
     2041 acgcggtcgc ccgcggcctg aagagcaagc cgtgggtgaa gccctcgctc ggcccgggct
     2101 cgctggtggt caccgattac ctcaagaaag ccggcgtgct cgccgacctc gagaagctcg
     2161 gcttctacgt cgtcggttac ggctgcacga cctgcatcgg caactccggc ccgctgcccg
     2221 aggaagtctc gcgcggcatc gccgagaacg acctcgtggt cgcctcggtg ctgtcgggca
     2281 accgcaactt cgagggccgc gtgcaccccg aagtgaagat gaactacctc gcctcgccgc
     2341 cgctggtggt cgcctacgcg ctcgccggca cggtcgacat cgacctgacc accgagccgc
     2401 tcgggcacga cgccgccggc aacccggtgt tcctgcgcga catctggccg agcaacaagg
     2461 aaatcggcga caccatcgcc gcgaccgtcg gcccggagct gttcgcgcag aactacgccg
     2521 acgtgttcaa gggcgacacg cgctggaacc agatcgcctc gccggaaggc gagtccttcg
     2581 cgtgggacga agcctcgacc tacatcaaga acccgcccta cttcgacggc atgaccatgt
     2641 cggtcggtcg catcgccgac ctccacggcg cgcgcgtgct cggcctgttc ggcgattcca
     2701 tcaccaccga ccacatctcc ccggccggca acatcaagaa ggattcgccg gcgggccgct
     2761 acctgcaggc gcgcggcgtg cagccggccg atttcaacag ctacggctcg cgccgcggca
     2821 acgacgacgt catggtgcgc ggcaccttcg ccaacatccg catcaagaac ctgatgttcg
     2881 gtggcgagga aggcggcaac accctgtact tccgcgccaa tgcgcagccg gagaagctgg
     2941 cgatctacga cgcggcgatg aagtacaagg ccgacggcgt gccgctggtg gtgttcgccg
     3001 gcaaggaata cggcaccggc tcctcgcgcg actgggcggc caagggcacc aacctgctgg
     3061 gcgtcaaggc ggtggtcgcc gagagcttcg agcgcatcca ccgctccaac ctcgtcggca
     3121 tgggcgtgct gccgctgcag ttccacgaag gccagaacgc gaagtcgctc ggcctggacg
     3181 gcagcgaggt ggtcgacgtg gtgggcctcg aggacggcgc ggcgaagacc gcgacggtgg
     3241 tcgcgcgccg cccggacggc ttcgagaggc gtttcgaggt tcgcgtgctg ctgctgacgc
     3301 cgaaggaagt cgagtacttc cgcaacggcg ggatcctgca ctacgtgctg cggcagctcg
     3361 cgtcgaggaa ggcggcgtaa ccgcccggaa ggggcggaag gccggccctc gcgcggtact
     3421 cgcgagggca tcggaacaag gccgcctccg ggcggccttt ttcatgcgct agcggtcgcc
     3481 cgccgccttc cagccggcgc tggccaggcg ccactcgcca ccctcgagtc gccatccggt
     3541 ggtcactgcg tagagctgcc ccgcctcggg cagcgcgccc gcatcgccac cggtgagcac
     3601 cacgtcgcaa ctgacgctgg ccgcggcgcc ctgcacccgg acgtcgaggg ggcccgcatg
     3661 cgcgccaacg ctgcggtagc gcaggaacat gagctgcgcg agccgggccg cgccggcctt
     3721 gtccagcccg tccggtccga tgaagtcgtc ggcgagcacc ccgcgcacgc cggccgcatc
     3781 gcgcgcgtcg accgcctgct gcagttccga cagcgtcgcg cgcaaccggg tttccggggt
     3841 cgaccgcgca caggcggcca ccaggagcag cgccatcagc gccgcgatcc gcagcccttt
     3901 cgccatggcg tccatcgctt ctccgcagcg tgccggcggc ccagtctgca ccgcttccgc
     3961 gccttgcggg cacagggtcg ctatgctcca atccggtgca ccgtacgccg ccgcatgcgt
     4021 gatgcgcggc cgcaacagca caggggacaa catggccgaa cgtccgtggc tcgcgcacta
     4081 tccggccggg atgccggcgg agatcgatgc cgacgagtac ccgtcggtgg ccgccgtgtt
     4141 ccatcgttcg gtggagaaat accgcgaccg gcccgccttc gccaacctcg gcaaggtgat
     4201 gagctacggc gaactcgacc ggctcagcgc gcagttcgcc gcatggctgc tcggcgagct
     4261 ggggctcaag cgcggcgacc gcgtcgcgat catgatgccg aactgcctgc agtacccgat
     4321 cgccaccttc ggcgtgctgc gcgccggcct cacggtcgtc aacgtcaacc cgatgtacac
     4381 ctcgcacgag ctgcaccacc agctcgagga ctcgggcgcc agcgtgatcg tggtgctcga
     4441 caacttcgcc gacacggtgc tcgaggcgat gcccggcacg gcgctgcgcc aggtggtcgc
     4501 caccggcctc ggcgacatgc tcggcttccc gaagggcgcg ctggtcaact tcgtcctgcg
     4561 ccatgtcagg aagatggtgc cggcgtgcac gattcccggc gcggtccgct tccgcgagac
     4621 gctggagcgc ggcgcgcggc tgccgccgcc gcaggtcgac atcgatcccc aggacatcgc
     4681 gttcctgcaa tacaccggcg gaaccacggg cgtggcgaag ggcgcgatgc tcacccaccg
     4741 caacctcgtc gccaacatgc agcaggccgc ggcgtgggtg cgcaacaacg tgcgcgacgg
     4801 cgaagagatc atcatcaccg cgctgcccct gtaccacatc ttcgcgctga cggcgaacgg
     4861 cctggtcttc atgaagttcg gcgggctgaa ctacatgatc accaacccgc gcgacatgcc
     4921 cgccttcgtc agggaactgg gcaaggtgcc gttcaccgcg atcaccgggg tcaacacgct
     4981 gttcaacggc ctcctcaaca cgccgggttt cgacaagctc gacttctcgc gcctgcgcct
     5041 caccctcggc ggcggcatgg cggtgcaacg cacggtcgcc gagcgctgga agcaggtgac
     5101 cggctgcacg ctggtggagg cgtacgggct caccgaaacc tcgccggcgg cctgcatcaa
     5161 ccccatggac ctggccgaat acaacggcgc catcggcctg ccgatcccgt ccaccgatgc
     5221 ctgcctcaag gacgaggagg gtcgccacct gccgaccggc gaagtcggcg agctgtgcat
     5281 caagggcccg caggtgatga aggggtactg gcagcgcccc gacgagaccg ccaaggtggt
     5341 cgacgccgaa ggctggctgc acaccggcga catggcgcgc atggacgaac gcggcttctt
     5401 ctacatcgtc gaccgcaaga aggacatgat cctggtgtcg ggtttcaacg tgtatccgaa
     5461 cgaggtcgag gacgtgctcg ccgggatgcc gggcgtgcgc gaggtcgccg cgatcggcgt
     5521 gcccgacgag aagtccggcg aggcggtgaa ggtcgtcatc gtgcgcaagg atccgtcgct
     5581 caccgccgaa caggtgaagg cgtacgcgcg cgaatacctc accggctaca agcgcccgca
     5641 ctacgtcgaa ttccgcgacg aactgccgaa gaccaacgtc ggcaagatcc tccgtcgcga
     5701 gctgcgcgac gccccgccgc caaggtagcg gccgcggcaa ccacctgccc ttccggacgc
     5761 ccgcaggcga tgtttgcggg cgtcttgcct tgcgggcata gaatccgcgg aagtcgggcg
     5821 cagcgcacac ccttttcagc cgtctgatcc cccgaccggc cggacggcac ccctggaggt
     5881 catcgtcatg tcagccgtca tcccgctcca tcccgccgac gttcgccaaa ccctgcgcgt
     5941 ggtcgaggag ccctcccgca acgtgcactg gtgccacatg cacgccgacc tcgtcggccg
     6001 cccggggcgc gcctgcttct ccacccgcct ggtcgaggac atcctcgggt accagcagtc
     6061 actgggggcg cgcctgcgcc acgaggcgcg cgacgacgac cagctgccgc acgtcgtgct
     6121 cgcttccgac aatcccggcg tgttcaacct cggcggggac ctcgagctgt tctgccgcct
     6181 catccgttcg ggcgaccgcg acggcctgct cgactacgcg cgcaagtgcg tgctcggcgt
     6241 gcatgccttc cacgccggcc tgggtgtcgg cgcgcacacc atcgcgctgg tgcagggcga
     6301 tgcgctcggg ggcgggttcg aggccgcgct gggctgccac accatcgtcg ccgaggaagg
     6361 cgtgctgatg ggcctgccgg aggtgctgtt cgatctcttc cccggcatgg gcgcctattc
     6421 cttcctgtgc aagcgcgtgc ccgccaagct cgccgagaag atcatgctgg aaggcaacgt
     6481 catcccggcc gaggagcttt accggctcgg gctggtcgac gtgctcgccc ggcgcgggga
     6541 aggtgcgcag gcggtggagg aagtgatccg cgccagccgc cgcatcccgc acgcacgcgc
     6601 ggcgatgcag caggtgcgcg agctggccca gccggtcaca ctggacgaga tgatgcgcat
     6661 caccgggatc tgggtcgaca cggcgctgca gctcggcgac aggtcgctgc gcacgatgga
     6721 gcggctggtg cgcgcgcagt acaggcgcca ggacggccgc gaggcgatgg cttgaaggcg
     6781 ccgccggccg ctccgctcag gacgggtccg aaccgggcat ggggccgccg tcgcgctggt
     6841 cgcgcgacga cagttccctg acctcggtac gggcccgccg ggcggtcagc tccaccagcg
     6901 ggcccaggtc ggcggtcaga cgcaagcctt cgcgcgagag cgcatcgttg ctcatccgca
     6961 tcaggtcccg gcagcgctcg accagcgggc cggcgcccag gttctcggcc accccgcgca
     7021 tcgcgtgagc ggcctcgcgc aacgtctcgc catcgcgtcg cgaagccgcc tgctgcgcgt
     7081 tgctcatgca gcgtcccatg tcgcgcaggc actgctcgac gaaatcatgc aggaaccgct
     7141 cgccgagctg catgccggcc agctcctgca acacgctacc cccgtccccg cgtcgcccgg
     7201 ggacctccgc cgcggacat
//
LOCUS       DATIQC010000550         2844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_529940, whole genome shotgun sequence.
ACCESSION   DATIQC010000550 DATIQC010000000
VERSION     DATIQC010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 2844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529940"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..886)
                     /locus_tag="VLM17_11840"
     CDS             complement(<1..886)
                     /locus_tag="VLM17_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019660025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008241 - peptidyl-dipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M2 family metallopeptidase"
                     /protein_id="HSR66280.1"
                     /translation="MTLRPALLALALGAAVLALGACRRTPSPPPATTGAPLQQAPAGE
                     TAEQFVARVNEEFRGLYAELTAAQWISSTYINDDSELVAAKANERWLSALNGWIAQAR
                     RYEGKAMSPQAARSIMLLKLMTSMPAPRDPARLAELARIATRLEGMYGAGTYCREVDG
                     QKQCRQLGDLEDVLRTSRDYDAQLDAWQGWHATATPMRRDYVRFVALVDEGARDMGFA
                     DAGEAWRAAYDMPPAQFAAETDRLWGQVKPLYEQLHCYARTRLDAKYGKDKGEVGGRM
                     LPAHLMGNMWQQDWSNLWD"
     gene            complement(960..1481)
                     /locus_tag="VLM17_11845"
     CDS             complement(960..1481)
                     /locus_tag="VLM17_11845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66281.1"
                     /translation="MVPQAYTDVAPARQVLPLGAIDPEAARALLARYGIALHVLPDGA
                     DIPGSYWGAPEAGLVGASVYARRDTPVHSLLHEAAHLIVLPPERRARVHTDATDSIEE
                     EDAVCVLQSLLGDALPGVGGARVLADMDAWGYTFRLGSARAYVEQDADSAWRWLAARG
                     LVDAARRLRLPPA"
     gene            complement(1528..1785)
                     /gene="minE"
                     /locus_tag="VLM17_11850"
     CDS             complement(1528..1785)
                     /gene="minE"
                     /locus_tag="VLM17_11850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014160045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032955 - regulation of division septum
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HSR66282.1"
                     /translation="MGMFDFLKAKKNTASIAKDRLRIIIAQERSTADGPDYLPLLRRE
                     LLEVIRKYVNVDVEAVKVDVVKDGEHDVLDISVSLPERTSA"
     gene            complement(1789..2598)
                     /gene="minD"
                     /locus_tag="VLM17_11855"
     CDS             complement(1789..2598)
                     /gene="minD"
                     /locus_tag="VLM17_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006424120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0000918 - division septum site selection
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HSR66283.1"
                     /translation="MAEIIVVTSGKGGVGKTTTSASIACGLARRGRKVAVIDFDVGLR
                     NLDLIMGCERRVVYDFVNVIHGEASLKQALIKDKRFDNLHVLAASQTRDKDALTKEGV
                     EKVLKDLADEGFDYIVCDSPAGIEKGAFLAMYFADQAVVVVNPEVSSVRDSDRILGLL
                     ASKTRKAEAGERVKEFLLLTRYSPARVEGGEMLSIGDVEEVLGLKTIGVIPESGDVLN
                     ASNKGEPVILDVESPAGQAYEDAVARLMGEERPMRFTQLEKKGFFSKLFGG"
     gene            complement(2712..>2844)
                     /gene="minC"
                     /locus_tag="VLM17_11860"
     CDS             complement(2712..>2844)
                     /gene="minC"
                     /locus_tag="VLM17_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007973818.1"
                     /note="blocks the formation of polar Z-ring septums;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HSR66284.1"
                     /translation="EFHAELVAIAGHYKVLEDMPADLRGKPVQIWLEAGQLRIAALD"
BASE COUNT          377 a         1010 c         1011 g          446 t
ORIGIN      
        1 tgtcccagag gttgctccag tcctgctgcc acatgttgcc catcaggtgc gccggcagca
       61 tgcgcccgcc gacctcgccc ttgtccttgc cgtacttcgc gtccagccgc gtgcgcgcgt
      121 agcagtggag ctgctcgtac agcggcttga cctggcccca gaggcggtcg gtctcggcgg
      181 cgaactgcgc cggcggcatg tcgtaggccg cgcgccaggc ctcgccggcg tccgcgaagc
      241 ccatgtcccg cgcgccctcg tcgaccagcg cgacgaagcg cacgtagtcc ctgcgcatcg
      301 gcgtcgcggt cgcgtgccag ccctgccagg cgtcgagttg cgcgtcgtag tcgcggctgg
      361 tgcgcagcac gtcctcgagg tcgccgagct ggcggcactg cttctggccg tcgacctcgc
      421 ggcagtaggt gccggcgccg tacatgccct ccagccgggt cgcgatgcgc gcgagctcgg
      481 cgagcctggc cggatcgcgc ggggccggca tcgacgtcat cagcttgagc agcatgatcg
      541 agcgcgccgc ctgcggggac atcgccttgc cttcgtagcg gcgcgcctgc gcgatccagc
      601 cattgagcgc cgacagccag cgctcgttcg ccttcgccgc gaccagctcg ctgtcgtcgt
      661 tgatgtaggt cgaggagatc cactgcgccg cggtcagttc ggcgtagagg ccgcggaatt
      721 cctcgttgac gcgggcgacg aactgctccg cggtctcgcc ggcgggcgcc tgctgcaacg
      781 gcgcgccggt cgtggccggc ggcggcgaag gcgtgcgcct gcaggcgccg agggcgagca
      841 cggcggcgcc gagggcgagc gcgagcaggg cggggcggag ggtcatcggg tgtccttcgc
      901 gccggcgccg gcggggaatc gggcccgcag gctagtgccg ccgcgaccgc cggcgcaagt
      961 caggcgggcg gcaggcgcag gcgccgcgcg gcatccacga gcccgcgcgc ggccagccag
     1021 cgccacgcgg aatccgcgtc ctgttcgaca taggcccgag ccgagccgag ccggaaggtg
     1081 tagccccagg cgtccatgtc ggcgagcacg cgcgcgccgc cgacgccggg cagggcgtcg
     1141 ccgagcagcg actgcagcac gcacaccgcg tcctcctcct cgatcgagtc ggtggcatcg
     1201 gtatgcaccc gcgcgcgccg ctccggcggc agcacgatca ggtgcgcggc ctcgtgcagc
     1261 agcgaatgca ccggcgtgtc gcggcgcgca tacacgctgg cgccgacgag gcctgcctcc
     1321 ggcgcgcccc agtagctgcc ggggatgtcg gcgccgtcgg gcagcacgtg cagggcgatg
     1381 ccgtagcgcg cgagcagggc gcgcgcggcc tccgggtcga tcgcgccgag cggcaggacc
     1441 tgccgggccg gcgccacgtc ggtgtaggcc tgcgggacca tggaagaatc cgccgccgcc
     1501 ggttgctcct gcacgacggg cgccgcgtca ggcggaggtg cgctcgggca gcgacaccga
     1561 gatgtcgagc acgtcgtgct cgccgtcctt gaccacgtcg accttcaccg cctcgacgtc
     1621 gacgttgacg tacttgcgga tgacctccag cagctcgcgg cgcagcagcg gcaggtagtc
     1681 ggggccgtcg gcggtgctgc gctcctgcgc gatgatgatg cgcaggcggt ccttggcgat
     1741 cgacgcggtg ttcttcttgg ctttcaggaa atcgaacatg cccatgcgtc agcccccgaa
     1801 cagcttgctg aagaagccct tcttctccag ctgggtgaag cgcatcggcc gctcctcgcc
     1861 catcaggcgg gcgacggcgt cctcgtaggc ctggccggcc ggggactcga cgtcgaggat
     1921 gaccggctcg cccttgttgg acgcgttgag cacgtcgccc gattcgggga tgacgccgat
     1981 cgtcttgagg ccgagcacct cctcgacgtc gccgatcgac agcatctcgc caccctcgac
     2041 gcgcgccggg ctgtagcggg tcagcagcag gaattccttg acccgctccc cggcctcggc
     2101 cttgcgggtc ttgctggcga gcaggccgag gatgcggtct gagtcgcgca ccgacgacac
     2161 ttccgggttg accaccacca cggcctggtc ggcgaagtac atcgccagga acgcgccctt
     2221 ctcgatgccg gcgggcgagt cgcacacgat gtagtcgaaa ccttcgtcgg cgaggtcctt
     2281 gagcaccttc tccacgcctt ccttggtcag cgcgtccttg tcgcgcgtct gcgaggccgc
     2341 gagcacgtgc aggttgtcga agcgcttgtc cttgatcagc gcctgcttga gcgaggcctc
     2401 gccgtggatg acgttgacga agtcgtacac cacgcggcgc tcgcagccca tgatcaggtc
     2461 gaggttgcgc aggccgacgt cgaagtcgat gaccgcgacc ttcctgccgc ggcgcgccag
     2521 cccgcaggcg atgctggcgc tggtggtggt cttgccgacg ccgcccttgc cggacgtgac
     2581 tacgatgatt tcggccaaag caattctccc gggttcccca ggcgcgcttc gcggcgcgct
     2641 cgttgttgtc gttgcgcgga cggtcgggct tgccgcgcgg cacaagaccg catcctaccg
     2701 tgtcgcgcgc ttcagtcgag cgcggcgatg cgcagctgcc ccgcttccag ccagatctgc
     2761 accggcttgc cgcgcaggtc cgccggcatg tcctccagca ccttgtagtg gccggcgatg
     2821 gcgaccagct cggcatggaa ctcg
//
LOCUS       DATIQC010000551         1510 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_529943, whole genome shotgun sequence.
ACCESSION   DATIQC010000551 DATIQC010000000
VERSION     DATIQC010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529943"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VLM17_11865"
     CDS             <1..525
                     /locus_tag="VLM17_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010342060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HSR66285.1"
                     /translation="RRGAAVRLVAGPVQLATPAGVERIDVRSAEQMREAVLAALPVDA
                     YIGAAAVADWRPRAIAANKMKKTTGVDTLTLELVRTPDILAEVATHAARPRLVVGFAA
                     ETEDVERYARAKLVAKRLDLIAANRVGIAGAGFESDDNQLTVYGDDLVRDLGPAPKTE
                     LADALLDLIAERLS"
     gene            525..983
                     /gene="dut"
                     /locus_tag="VLM17_11870"
     CDS             525..983
                     /gene="dut"
                     /locus_tag="VLM17_11870"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011038933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HSR66286.1"
                     /translation="MHRTLDLKVLDARFGREWPLPDYATPASAALDLRAALDRSLTLA
                     PGDAALVPSGLAIHLADPTLCALVLPRSGLGHKHGIVLGNGTGLIDADYQGPLLISIW
                     NRGTEAFTIAPGDRIAQLLVMPIVRATLRVVDTFEESARGHGGFGHTGVR"
     gene            1004..>1510
                     /locus_tag="VLM17_11875"
     CDS             1004..>1510
                     /locus_tag="VLM17_11875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HSR66287.1"
                     /translation="MSDSKPRLGLPAASLRPVLPIVAAACVLLALWLAWTGFGQWRDA
                     QRSEALRQSRDLAVQGTAQSLRKQTRQLQERLASAPVQAALAQGDFATAANALRTGWS
                     HVEMVELLPPDLDAAYAGLPATGYGRLAVAEAALAAGRPLARIARDNGNRLVLAAPAN
                     VGGRPAAVA"
BASE COUNT          201 a          575 c          545 g          189 t
ORIGIN      
        1 cgccgcggcg ccgcggtgcg gctggtcgcc ggtccggtcc agctggcgac gccggcgggc
       61 gtcgagcgca tcgacgtgcg ctcggccgaa cagatgcgcg aagcggtgct cgccgcgctg
      121 ccggtcgacg cctacatcgg cgcggcggcg gtggccgact ggcggccgcg cgcgatcgcc
      181 gcgaacaaga tgaagaagac caccggcgtc gacacgctca cgctggaact ggtgcgcacg
      241 cccgacatcc tcgccgaagt cgccacgcat gcggcgcgcc cgcgcctggt ggtcggcttc
      301 gccgccgaga ccgaggacgt cgagcgctac gcgcgcgcca aactcgtggc caagcggctc
      361 gatttgatcg ccgccaaccg cgtcggcatc gccggcgccg gtttcgagag cgacgacaac
      421 cagctcaccg tgtacggcga cgacctcgtg cgcgacctcg gtcccgcgcc gaagaccgag
      481 ctcgccgacg ccctgctcga cctcatcgcg gagcgcctgt cctgatgcat cgcaccctcg
      541 acctgaaagt gctggacgcc cgcttcggcc gcgaatggcc gctgcccgac tacgccacgc
      601 ccgccagcgc ggcactcgac ctgcgcgccg cgctcgaccg gtcgctgacc ctggcgccgg
      661 gcgacgccgc gctggtgccc tccggactgg ccatccacct cgccgacccg accctgtgcg
      721 cgctggtgct gccgcgctcg ggcctgggcc acaagcacgg catcgtgctc ggcaacggca
      781 ccggcctgat cgacgccgac taccagggcc cgctgctgat cagcatctgg aaccggggca
      841 ccgaagcctt caccatcgcc cccggggacc gcatcgccca gctgctggtg atgccgatcg
      901 tgcgggcgac gctgcgggtg gtggatactt tcgaggagag cgcgcgcggc cacggtggct
      961 tcggccacac cggcgtgcgt tgaagacatc acggggaatg ccgatgagcg atagcaaacc
     1021 gcgcctgggc ctgcccgccg cctcgctgcg gccggtgctg ccgatcgtcg ccgcagcgtg
     1081 cgtgctgctg gccctgtggc tggcgtggac cggcttcggc cagtggcgcg acgcgcagcg
     1141 cagcgaggcg ttgcggcagt cgcgcgacct cgccgtgcag ggcaccgcac agtcgctgcg
     1201 gaagcagacc cggcagctgc aggagcggct cgcgtcggcg ccggtccagg ccgcgctcgc
     1261 ccagggcgac ttcgccacgg cggcgaacgc cctccgcacc ggctggtcgc acgtggaaat
     1321 ggtcgaactg ctgccgccgg acctcgacgc ggcctacgcg gggttgccgg ccaccggtta
     1381 cggcaggctg gccgtggccg aggccgcgct cgccgcgggc aggccgctcg cgcgcatcgc
     1441 ccgcgacaac ggcaaccggc tggtgctggc ggcgccggcg aacgtcggcg gcaggccggc
     1501 ggcggtcgcc
//
LOCUS       DATIQC010000552         9196 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Lysobacteraceae bacterium isolate SMAG_U15867
            k141_70607, whole genome shotgun sequence.
ACCESSION   DATIQC010000552 DATIQC010000000
VERSION     DATIQC010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37936577
            Sequence Read Archive: SRR9691023
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Lysobacteraceae bacterium (soil metagenome)
  ORGANISM  Lysobacteraceae bacterium
            Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales;
            Lysobacteraceae.
REFERENCE   1  (bases 1 to 9196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/04/2024 08:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,381
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 24
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9196
                     /organism="Lysobacteraceae bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70607"
                     /isolate="SMAG_U15867"
                     /isolation_source="soil"
                     /db_xref="taxon:1926873"
                     /environmental_sample
                     /country="China"
                     /lat_lon="29.91 N 107.24 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2821)
                     /locus_tag="VLM17_11880"
     CDS             complement(<1..2821)
                     /locus_tag="VLM17_11880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005923377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR66288.1"
                     /translation="MSVAELSIKRPVTTIMFFVSLLVIGLIAAVRLPLESFPEVSPPF
                     IFVSLPYAGSTPEEVERTVLRPTEEALATMSGIKRMEAQARSDGAQVFIQFKDWSRDV
                     AIAASEARERLDAIRDELPDDLKRWQVLKFSTTDQPVLRVRLASRHDLTGAYDMIDRE
                     FKRRLERIPGVARVEVSGAPKNEVEIAIQPDRLTAHQIGINDLSTRLQAANFSVSAGE
                     IDDGGRRLRVQPVGEITDLQQLRDLIVARDGTRLGDIAEVRLKPGEMDTGRRLDGERA
                     VGLDIFKERNANLVQVSRDALAEVNAIRSQPRLSDIQIKIIENQGENVTSSLSELAEA
                     GGIGLLLSIVVLYFFLRHWPSTLMVTLAIPICFVMTLGFMYFAGVTLNILSMMGLLLA
                     VGMLVDNAVVVVESIYQERERLPGQPRLASILGTRHVAIALTAGTLCHCIVFVPNLFG
                     ERNFLSIYLSQIAITISVSLLASWLVAVSLIPMLSARLKTPPAVRDERGLIPRLQKRY
                     AELLRWTLEHRGWSVTGIVLIIAISIVPMVLTKKDMFGGDDGGETNIFYQWKGSYTKD
                     QMSAEILRVEQFLDANRKKYHLTQIYSWWSEQGDAGTRITFDSKQASRTRPLIEEIRK
                     ELPKSARADIGIGDQGGGPGGGQPGQNVQVQLVGDSTQVLAALGEDIVPILARRKELR
                     DVRVDAGDQNSELNVRVDRERAAAFGFSAQQVASFVGIALRGAPLREFRRGDNEVPVW
                     VRFAGAEKYRVEDLSSFMVRSPDGRTVPLMAMVNVAVKPSATQIQRTNRQTTLTIKAN
                     LADKVTMPDARKAMEETLKHVAFPDGYSYSFDGGGFQDDQEATQQMFFNLIIALVMIY
                     VVMAAVFESLLFPSAIMSGVLFSVFGVFWLFWITGTEFNIMAFIGILVLMVVVVNNGI
                     VMVEHINNLRRRGLSRTEALVEGSRE"
     gene            complement(2825..6325)
                     /locus_tag="VLM17_11885"
     CDS             complement(2825..6325)
                     /locus_tag="VLM17_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013535052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HSR66289.1"
                     /translation="MSGATREPGARAGFNLVEFSTRRRVTVAMATLTFVLFGLIALRD
                     LKVNLLPDLSYPTLTVRTDYTGAAPAEIETLVTEPVEEAVGVVKNLRKLTSVSRTGQS
                     DVVLQFAWGTDMDQASLEVRDKMEALQLPLEAKAPVLLRFNPSTEPIMRLALTSKAAG
                     SGGTDAVRRLTELRRYADDDLKKKLEPVDGVAAVKVGGGLEDEVQVDIDQQKLAALDI
                     PISTVIDRLKQENVNISGGRLEEGSQRYLVRTVNQFADVDEIRNMLVTTQAAGGGAAQ
                     SAAEQMARVAAATGDASAMAAAASVQNATGGGQGTAAGGMPVRLGDIATVRQGYKERE
                     AIIRLGGKEAVELALYKEGDANTVATADAIQKKLADLKQQIPPDVDVTVIDDQSQFIR
                     HAISDVKLDAVIGGMLAILIIFLFLRDGWSTFVISLSLPVSIVATFFFMGRFGLSLNV
                     MSLGGLALATGLVVDDSIVVLESIAKARERGLGMLDAAIAGTREVSMAVFASTLTTIS
                     VFLPLVFVQGIAGQLFRDQALTVAIAIAISLVVAMTLIPMLSALKGRPPLAFPEEPPH
                     PQWQPARRWQRPFALGKRGAGMGVRGVFFGLAWLVFRLWKGLAAVVGPVMRKASDLAM
                     APYHRAEALYLRLLPGALARPKAVLLAAAAAFGFTLLAVPLLGADLIPQLAQDRFDMT
                     VKLPPGTPLRDTDALVRQLQAAHVGDKGIRALYAVSGTGTRLDANPTESGENIGKLTV
                     VMADGGSKQVEARETEALRASMRDHPGAQVDFGRPQLFSLSTPLEIELQGQDLPTIER
                     AGQRMAAMLRRSSHYADVKSSVEEGFPEIQIRFDEARAGALGLTTRQIADVVVNKVQG
                     NVATRYSFRDRKIDVLVRAQENQRSSIDAIRRLIVNPGSSTPVTLESVADVVATTGPS
                     EIHRADQVRVAIVSANLRGIDLGTAVQEVQQMVDANPLGADVRMHIGGQGEELGDSVR
                     SLLFAFGLAVFLVYLVMASQFESLLHPFVILFTIPLALVGAVLALLLTRSPVSAVVFI
                     GLILLVGLVVKNAIILIDKVNQLREQGVAKRDALVEGARSRLRPIMMTTLCTLFGFLP
                     LALAFGEGAEVRSPMAITVIGGLLVSTLLTLVVIPVVYDLLDRSADARWVERARRARH
                     DAEEVADNIRHESDPLGNEG"
     gene            complement(6322..7467)
                     /locus_tag="VLM17_11890"
     CDS             complement(6322..7467)
                     /locus_tag="VLM17_11890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006452399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HSR66290.1"
                     /translation="MSRPHHSPAPSRWRLLALCAACAIALSACKGGNGDADAKDGGAT
                     AQKADAIPVEVATVARRPIAASYSGTAPLEARAESQVVAKTSGVALQVLAEEGQPVRA
                     GQVLVRLDGARLALQAAQSAAQVRKLEANYNRSLQLSRQQLISANDLDQLKYDLENAR
                     AANRLANLELSYTSVLAPMSGVVASRSIKPGNFVQINTPIFRIVDNSRLEATLNVPER
                     ELETLKPGLPVSLQVDALPGKGFPGKVDRVAPVVDANSGTFRVVCAFEGGGTLQPGQL
                     QPGMFGRIRIDYDQRADAVVIPRVALLDDEEPAVFTVRGGKAVRVPVKLGYVDGEWAE
                     VRSGLKVGDPVVTAGKVALREGSLVQVLNGPADARVAAAKPAAGRKQ"
     gene            7687..8070
                     /locus_tag="VLM17_11895"
     CDS             7687..8070
                     /locus_tag="VLM17_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019399961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HSR66291.1"
                     /translation="MIRTLLFASLTLAAGNVLAQDAAPAPAQAPAAAQAPASATPAAL
                     DGDATRGHTLTYTCQGCHGITGYKNAYPNYHVPRIGGQSPQYLINALTEYKQGKRKHP
                     TMQAQAESFSAQDIADIAAYLSGLK"
     gene            8082..8549
                     /locus_tag="VLM17_11900"
     CDS             8082..8549
                     /locus_tag="VLM17_11900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017355583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HSR66292.1"
                     /translation="MTKISNTKLGLALALLATCATLAACQPAGETPAEHSAADRSEGH
                     TASSAGLPAGRPDFGEKLANTKNADTGQACVGCHGAGGNAPIDPGYPKLGGQYADYIA
                     HSLQLYRDGQRAGTPTTDLMGGQAKKLTDQQIADLAAYFSAQATQLQDLHAAK"
     gene            complement(8673..>9196)
                     /locus_tag="VLM17_11905"
     CDS             complement(8673..>9196)
                     /locus_tag="VLM17_11905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014503466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HSR66293.1"
                     /translation="TAGAGPAAAKPGAWPSPARNDDWGNSTRNRPGAMAGKPGLLDAN
                     GTPRLPPGMAAPGGGLPPGTVTEKIADLDRAGTWLKRPPIDYTPTRFDKFWTPSETLL
                     EEWVRRNIRSVDIPIPGSTKKLHCVVSLLQLGGGCGIDDSNLQDQEAGARKPPDVPFK
                     PELQEDQPSLRKP"
BASE COUNT         1375 a         3264 c         3150 g         1407 t
ORIGIN      
        1 gctcgcggct gccctcgacc agcgcctcgg tacgcgacag cccgcgccgg cgcaggttgt
       61 tgatgtgctc caccatgacg atgccgttgt tcaccaccac gaccatcagc accaggatac
      121 cgatgaaggc catgatgttg aactcggtgc cggtgatcca gaacagccag aacacgccga
      181 acaccgagaa cagcacgccc gacatgatcg ccgacgggaa cagcagcgat tcgaagaccg
      241 ccgccatcac cacgtagatc atcaccagcg cgatgatgag gttgaagaac atctgctggg
      301 tcgcttcctg gtcgtcctgg aagccgccgc cgtcgaagga gtagctgtag ccgtccggga
      361 acgcgacgtg cttgagcgtc tcctccatcg ccttgcgcgc gtccggcatg gtgaccttgt
      421 cggcgaggtt ggccttgatg gtgagggtgg tctggcggtt ggtgcgctgg atctgggtcg
      481 ccgacggctt caccgcgacg ttgaccatcg ccatcagcgg gaccgtgcgc ccgtccggcg
      541 aacgcaccat gaagctcgac aggtcctcca cgcggtactt ttccgccccc gcgaagcgca
      601 cccagaccgg cacctcgttg tcgccgcggc ggaattcccg caagggcgcg ccgcgcagcg
      661 cgatgccgac gaagctcgcc acctgctgcg cgctgaagcc gaacgccgcc gcgcgctccc
      721 ggtcgacccg cacgttgagc tcgctgttct ggtcgccggc gtccacgcgc acgtcgcgca
      781 gttccttgcg ccgcgccagg atcggcacga tgtcctcgcc gagcgcggcc agcacctggg
      841 tggagtcgcc gaccagctgc acctggacgt tctgccccgg ctgccccccg cccgggccgc
      901 cgccctggtc gccgatgccg atgtcggcgc gtgccgactt cgggagctcc ttgcggatct
      961 cctcgatcag cggccgcgtg cggctggcct gcttgctgtc gaaggtgatg cgggtgccgg
     1021 cgtcgccctg ctcgctccac caggaataga tctgggtgag gtggtatttc ttgcggttgg
     1081 cgtcgaggaa ctgctccacg cgcaggatct cggcggacat ctggtccttg gtgtagctgc
     1141 ccttccactg gtagaagatg ttggtttcgc cgccgtcgtc gccgccgaac atgtccttct
     1201 tggtgagcac catcgggacg atgctgatgg cgatgatcag cacgatgccg gtgacgctcc
     1261 agccgcggtg ttcgagcgtc caccgcagca gctcggcgta gcgcttctgc aggcgcggga
     1321 tcaggccgcg ctcgtcgcgc accgccggcg gcgtcttcag tcgcgccgac agcatcggga
     1381 tcaggctgac cgccaccagc cacgaggcca gcagcgacac cgagatggtg atcgcgatct
     1441 gcgagaggta gatgctgagg aaattgcgct cgccgaacag gttcggcacg aaaacgatgc
     1501 agtggcacag cgtgcccgcg gtgagcgcga tggcgacgtg gcgggtgccc aggatcgacg
     1561 ccagccgcgg ctgccccggc aggcgctcgc gctcctggta gatgctctcg accacgacca
     1621 cggcattgtc gaccagcatg ccgaccgcca gcagcaggcc catcatcgac aggatgttga
     1681 gcgtgacgcc ggcgaagtac atgaagccga gcgtcatcac gaagcagatc gggatcgcca
     1741 gcgtcaccat cagggtcgac ggccagtggc gcaggaagaa atacagcacc acgatcgaca
     1801 gcagcaggcc gatgccgccg gcctcggcga gctcggacag cgaactcgtg acgttctcgc
     1861 cctggttctc gatgatcttg atctggatgt ccgacagccg cggctggctg cggatggcgt
     1921 tgacttcggc cagtgcgtcg cgcgagacct gcacgaggtt ggcgttgcgc tccttgaaga
     1981 tgtccaggcc caccgcccgc tcgccgtcga ggcgccggcc ggtgtccatc tcgccgggct
     2041 tgaggcgaac ctcggcgatg tcgcccaggc gggtgccgtc gcgggcgacg atcaggtcgc
     2101 gcagctgctg caggtcggtg atctcgccga ccggctgcac ccgcaggcgc cgcccgccgt
     2161 cgtcgatctc gcccgccgac accgagaagt tcgccgcctg caggcgcgtg ctgaggtcgt
     2221 tgatgccgat ctggtgcgcg gtgaggcggt ctggctggat cgcgatctcc acctcgttct
     2281 tcggcgcgcc ggagacttcc acccgcgcca cgccgggaat gcgctcgagc cgccgcttga
     2341 actcgcggtc gatcatgtcg taggcgccgg tcaggtcgtg cctgctcgcc aggcgcacgc
     2401 gcagcaccgg ctggtcggtg gtggagaact tcagcacctg ccagcgcttg aggtcgtcgg
     2461 gcagttcgtc gcggatcgcg tccaggcgct cgcgcgcctc cgatgcggcg atggcgacgt
     2521 cgcggctcca gtccttgaac tggatgaaca cctgcgcgcc gtccgagcgc gcctgcgcct
     2581 ccatgcgctt gatcccgctc atggtcgcca gcgcttcctc ggtcggccgc aggaccgtgc
     2641 gctcgacctc ctccggcgtc gatcccgcgt acggcagcga gacgaagatg aagggcggcg
     2701 agacctccgg gaaggactcc agcggcaggc gcacggcggc gatcagaccg atcaccagca
     2761 gcgacacgaa gaacatgatc gtcgtgaccg gccgcttgat gctgagttcg gcgacgctca
     2821 tcgatcagcc ctcgttgccc agcggatcgg attcgtggcg gatgttgtcg gccacttcct
     2881 cggcatcgtg ccgcgcccgc cgcgcacgct cgacccagcg cgcgtcggcg ctgcgatcca
     2941 gcaggtcgta gaccaccggg atcacgacca gcgtcagcag cgtcgacacc agcaggccgc
     3001 cgatcaccgt gatcgccatc ggcgagcgca cttccgcgcc ctcgccgaag gccagcgcca
     3061 gcggcaggaa gccgaacagc gtgcacagcg tggtcatcat gatcgggcgc agtcgcgagc
     3121 gggcgccctc gaccagcgcg tcgcgcttgg ccaccccctg ctcgcgcagc tggttgacct
     3181 tgtcgatcag gatgatcgcg ttcttgacca ccaggccgac cagcaggatc aggccgatga
     3241 acaccaccgc cgacaccggc gagcgggtca gcagcaacgc cagcacggcg ccgaccagcg
     3301 ccagcgggat ggtgaacagg atcacgaacg ggtgcagcag cgactcgaac tgggacgcca
     3361 tcaccaggta gacgaggaac accgcgaggc cgaacgcgaa cagcagcgaa cgcacggaat
     3421 cgcccagctc ctcgccctgg ccgccgatgt gcatgcgcac gtcggcgccg agcgggttgg
     3481 cgtcgaccat ctgctgcact tcctgcaccg cggtgccgag gtcgatgccg cggaggttcg
     3541 cggacacgat cgccacccgc acctggtcgg cgcggtggat ctcgctcggg ccggtggtgg
     3601 cgaccacgtc ggccaccgat tccagcgtca ccggcgtgct gctgccggga ttgacgatca
     3661 ggcgccggat cgcgtcgatc gacgaacgct ggttctcctg agcgcgcacc agcacgtcga
     3721 tcttgcggtc gcggaagctg tagcgcgtgg cgacgttgcc ctgcaccttg ttgaccacga
     3781 cgtcggcgat ctgccgcgtg gtcaggccca gggcgccggc gcgcgcctcg tcgaagcgga
     3841 tctggatttc cgggaagccc tcctccaccg acgacttcac gtcggcatag tggctgctcc
     3901 tgcgcaacat cgccgccatg cgctggcccg cgcgttcgat cgtcggcagg tcctggccct
     3961 gcagctcgat ctccagcggc gtcgacaggc tgaacagctg cgggcggccg aagtcgacct
     4021 gcgcccccgg gtggtcgcgc atgctcgccc gcagcgcttc ggtctcgcgc gcctcgacct
     4081 gcttgctgcc gccatcggcc atgaccacgg tgagcttgcc gatgttctcg ccgctctcgg
     4141 tcgggttggc gtccagccgc gtgccggtgc cgctcaccgc gtacaacgcg cggatgccct
     4201 tgtcgccgac gtgcgcggcc tgcagctggc gcaccagcgc atcggtgtcg cgtagcggcg
     4261 tgccgggcgg cagcttgacg gtcatgtcga agcggtcctg cgcgagctgg ggaatgaggt
     4321 cggcgccgag cagcggcacc gccagcagcg tgaacccgaa cgcggccgcc gcggccagca
     4381 gcaccgcctt cggtcgcgcc agcgcgcccg gcagcaggcg caggtagagc gcctcggcgc
     4441 gatggtaggg cgccatcgcg agatcgctgg ccttgcgcat caccggaccg acgacggcgg
     4501 ccagcccctt ccacagccgg aacaccagcc acgcgaggcc gaagaacacg ccgcgcacgc
     4561 ccatgccggc gccgcgcttg cccagcgcga acggacgctg ccagcgcctg gccggctgcc
     4621 actgcggatg cggcggctcc tccgggaacg ccagcggcgg cctgcccttc agcgcactca
     4681 gcatcgggat cagggtcatc gccaccacca gcgaaatggc gatcgcgatg gccacggtca
     4741 gggcctggtc gcggaacagc tggccggcga tgccctgcac gaacaccagc ggcaggaaca
     4801 cggagatcgt ggtcagggtg gaggcgaaca ccgccatgct gacctcgcgg gtgccggcga
     4861 tcgccgcgtc gagcatgccg aggccgcgct cgcgcgcctt ggcgatggat tcgagcacga
     4921 cgatcgaatc gtcgacgacc aggccggtgg cgagcgcgag gccgccgagc gacatcacgt
     4981 tgaggctgag gccgaagcgg cccatgaaga agaacgtcgc cacgatcgag accggcagcg
     5041 acagcgagat cacgaacgtg ctccagccat cgcgcaggaa caggaagatg atcaggatcg
     5101 cgagcatgcc gccgatgacc gcgtcgagct tgacgtcgct gatcgcgtgg cggatgaact
     5161 gcgactggtc gtcgatcacg gtgacgtcga cgtccggcgg gatctgctgc ttgaggtcgg
     5221 cgagcttctt ctggatcgcg tcggcggtgg cgacggtatt cgcgtcgcct tccttgtaca
     5281 gcgcgagttc gaccgcctcc ttgccgccga ggcggatgat ggcctcgcgc tccttgtagc
     5341 cctggcgcac cgtggcgatg tcgcccaggc gcaccggcat gccgcccgcg gcggtgccct
     5401 gcccgccccc ggtagcgttc tgcaccgacg cggcagcggc catcgcgctg gcgtcgcccg
     5461 tggccgcggc cacgcgcgcc atctgctcgg ccgcgctctg cgccgcgccg ccaccggccg
     5521 cctgggtggt gaccagcatg ttgcggatct cgtcgacgtc ggcgaactgg ttgaccgtgc
     5581 gcacgaggta gcgctgcgag ccctcctcca ggcgtccgcc ggagatgttg acgttctcct
     5641 gcttgaggcg gtcgatgacg gtggagatgg ggatgtcgag cgcggccagc ttctgctggt
     5701 cgatgtcgac ctgcacttcg tcctcgaggc cgccgccgac cttcaccgcg gcgacgccgt
     5761 ccaccggctc gagcttcttc ttgaggtcgt cgtcggcgta gcggcgcaac tcggtcaggc
     5821 ggcggacggc gtccgtgccg ccactgccgg ccgccttgct ggtcagggcg agccgcatga
     5881 tcggctcggt gctggggttg aagcgcagca gcaccggggc cttggcttcc agcggcagtt
     5941 gcagcgcctc catcttgtcg cgcacttcca gcgacgcctg gtccatgtcg gtgccccagg
     6001 cgaactgcag cacgacgtcg ctctggccgg tgcgcgagac cgaggtgagc ttgcgcaggt
     6061 tcttgaccac gccgaccgct tcctcgaccg gctcggtcac cagcgtctcg atctccgccg
     6121 gcgcggcacc ggtgtagtcg gtgcgcacgg tgagcgtcgg atagctgagg tcgggcagca
     6181 ggttgacctt gaggtcgcgc agcgcgatca ggccgaacag cacgaaggtg agcgtcgcca
     6241 tcgccaccgt cacgcggcgg cgggtggaga actcgacgag gttgaagcct gcccgcgcgc
     6301 cgggctcgcg cgtggcgccg ctcattgctt gcgaccggcg gccggcttgg cagcggcgac
     6361 gcgggcgtcg gccgggccat tgagcacctg caccaggctg ccctcgcgca gcgcgacctt
     6421 gcccgcggtc accaccggat cgccgacctt caggccggag cgcacttccg cccattcgcc
     6481 gtcgacatag ccgagcttga ccggcacgcg caccgccttg ccgccgcgca ccgtgaagac
     6541 cgccggctcc tcgtcgtcga gcagggcgac gcgcgggatc accacggcat cggcacgctg
     6601 gtcgtagtcg atgcggatgc gcccgaacat gccgggctgg agctggcccg gctgcagcgt
     6661 gccgccgccc tcgaacgcgc agacgacgcg gaacgtgccg ctgttcgcgt ccaccaccgg
     6721 cgcgacgcga tcgaccttgc cggggaaacc cttgcccggc aaggcatcga cctgcagcga
     6781 gaccggaagg ccgggcttga gcgtctccag ttcgcgctcg ggcacgttga gcgtggcctc
     6841 caggcgcgag ttgtcgacga tgcggaagat cggcgtgttg atctgcacga aattaccggg
     6901 cttgatcgag cgcgaggcga ccacgcccga catcggcgcg aggacgctgg tgtaggacag
     6961 ttcgaggttg gccaggcggt tggccgcgcg ggcgttctcg aggtcgtatt tcaactggtc
     7021 gaggtcgttg gcgctgatca gctgctgcct ggacagctgc agcgagcggt tgtagttggc
     7081 ttccagcttg cgcacctgcg ccgcgctctg cgcggcctgc agcgcgaggc gggcgccgtc
     7141 caggcgcacc agcacctgcc ccgccctcac cggttggcct tcctcggcca gcacctgcaa
     7201 cgcgacgccg gaggtcttgg cgacgacctg cgactcggcg cgcgcctcca gcggcgcggt
     7261 gccgctgtag ctggccgcga tcggccgccg cgccaccgtc gcgacttcca ccggaatggc
     7321 gtcggccttc tgcgcggtcg cgccgccgtc cttcgcgtcg gcgtccccgt tgccgccctt
     7381 gcaggccgag agggcgatcg cgcaggccgc gcacagggcg agcaggcgcc agcgggacgg
     7441 cgcgggggag tggtggggac gggacatggt cgggacctgt tgtctaggtg ttgtaggtat
     7501 gtatatcact cagtcggccg ggcggaatcc gccgaaggtc atggtcgcca ggcatcggac
     7561 acgcaaaggg atgcggcgcc tgttgattgg gttgcatgaa cggagcgggc tatactgacg
     7621 agcttgcgcg ccgctgttca gcgcggtgcc cgcgccaccc gacctctgcc cttcgcggac
     7681 ccacccatga tccgaacgct gttgtttgcc tccctgaccc tggctgccgg caacgtgctg
     7741 gcgcaggacg ccgcgccggc tccggcgcag gccccggccg ccgcccaggc gcccgcatcg
     7801 gcgaccccgg ccgccctcga cggcgacgcc acccgcgggc acaccctgac ctacacctgc
     7861 cagggctgcc acggcatcac cggttacaag aacgcgtatc cgaactacca cgtgccgcgg
     7921 atcggcgggc agtcgccgca gtacctgatc aacgcgctga ccgagtacaa gcagggcaag
     7981 cgcaagcatc cgaccatgca ggcgcaggcg gagagcttct cggcgcagga catcgccgac
     8041 atcgccgcct atctgtcggg cctgaagtga gccgccaccc catgacgaag atttccaaca
     8101 cgaagctggg cctcgccctc gcgctgctcg ccacctgcgc caccctcgcc gcctgccagc
     8161 ccgccggcga gacccccgcc gagcattccg ccgccgaccg cagcgaaggc cacaccgcct
     8221 cctccgcggg cctgccggcc ggccgcccgg acttcggcga gaagctcgcc aacaccaaga
     8281 acgccgacac cggccaggcc tgcgtcggct gccacggcgc cggcggcaac gcgccgatcg
     8341 accccggcta cccgaagctc ggtggccagt acgccgacta catcgcccat tcgctgcagc
     8401 tgtaccgcga cggccagcgt gccggcaccc cgaccaccga cctgatgggc ggccaggcga
     8461 agaagctcac cgaccagcag atcgccgacc ttgccgcgta cttcagcgcg caggccacgc
     8521 agttgcagga cctgcacgcg gccaagtaag cgattgccgc cagcgccacc ccggacggcc
     8581 cgcctcgcgg gccgtttgtt ttgcggtggt gctcgcgcgc ccgcggaaag gcccgcggtc
     8641 ctgggcggct cccgctccgc cgccccgggg catcagggct tgcgcagcga cggctggtct
     8701 tcctgcagtt ccggcttgaa cggcacgtcc gggggcttgc gcgccccggc ttcctggtcc
     8761 tgcaggttgg agtcgtcgat gccgcagccg ccgccgagct gcaacagcga caccacgcag
     8821 tgcagtttct tggtcgagcc cgggatcggg atgtcgacgc tgcggatgtt ccgtcgcacc
     8881 cattcctcca gcagcgtctc gctcggcgtc cagaacttgt cgaagcgggt cggcgtgtag
     8941 tcgatcggcg gacgcttgag ccaggtgccc gcgcggtcga ggtcggcgat cttctcggtc
     9001 acggtgcccg gcggcaggcc gccgcccggc gcggccatgc ccggcggcaa gcgtggcgtg
     9061 ccgttggcgt cgagcaaccc cggctttccg gccatggcgc ccgggcggtt gcgggtggaa
     9121 ttgccccagt cgtcgttgcg cgccggtgac ggccaggcac cgggcttcgc cgcagccggc
     9181 cccgcgccgg cggtgg
//
